HHsearch alignment for GI: 254780218 and conserved domain: pfam02223
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=100.00 E-value=0 Score=347.37 Aligned_cols=186 Identities=41% Similarity=0.651 Sum_probs=169.5
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 86788879799999999999977981999877889844100110012444541013456777889999977635655423
Q gi|254780218|r 9 FEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRPALM 88 (225)
Q Consensus 9 iEGiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p~L~ 88 (225)
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~~~g~~v~~~~ep~~~~~g~~ir~~l~~~--~~~~~~~~~llf~adR~~~~~~~i~~~l~ 78 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLKEQGIKVVLTREPGGTPIGEKIRELLLRN--EELSPLTEALLFAADRIEHLEEKIKPALK 78 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9799998999999999999998799089974999983799999998501--25899999999999999999999999997
Q ss_pred CCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHCCHH
Q ss_conf 45258723542431000100344424577654442038898411566520348776443211111000000002112889
Q gi|254780218|r 89 EGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFERKDVM 168 (225)
Q Consensus 89 ~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~~ 168 (225)
T Consensus 79 ~g~~VI~DRy~~S~~ayq~~~~~~~~~~i~~l~~~-~~~~~PDlti~Ldv~pe~~~~Ri~~R~~------~~~~e~e~~~ 151 (186)
T pfam02223 79 QGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPD-VPGPKPDLTFLLDVDPEVALKRLRRRGE------LDEFEFEQLD 151 (186)
T ss_pred CCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH-CCCCCCCEEEEEECCHHHHHHHHHHCCC------CCHHHHCCHH
T ss_conf 69989960731348998762047789999999872-0678999899983899999999986687------5627651799
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf 999999999999997899499981897889999999
Q gi|254780218|r 169 IHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVATNI 204 (225)
Q Consensus 169 ~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~~I 204 (225)
T Consensus 152 ~~~kv~~~Y~~l~~~-~~~~~~IDa~~~i~ev~~~I 186 (186)
T pfam02223 152 FLRKVRERYLELAKD-DERILIIDASNSIEEVHEEI 186 (186)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHC
T ss_conf 999999999999769-99789987999999997049