HHsearch alignment for GI: 254780218 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=95.95 E-value=0.021 Score=34.61 Aligned_cols=36 Identities=31% Similarity=0.255 Sum_probs=28.1
Q ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCC
Q ss_conf 9986-78887979999999999997798199987-788
Q gi|254780218|r 7 ISFE-GIEGAGKTTHISLLKRFLQRKNYDVHVTR-EPG 42 (225)
Q Consensus 7 I~iE-GiDGsGKsTq~~~L~~~L~~~g~~v~~~~-eP~ 42 (225)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq 41 (231)
T pfam07015 4 ITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADEN 41 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99961799865999999999999968995999968998