HHsearch alignment for GI: 254780218 and conserved domain: pfam08303
>pfam08303 tRNA_lig_kinase tRNA ligase kinase domain. This domain is found in fungal tRNA ligases and has kinase activity. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns.
Probab=95.93 E-value=0.073 Score=31.37 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--
Q ss_conf 788879799999999999977981999877889844100110012444541013456777889999977635655423--
Q gi|254780218|r 11 GIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVDEFGAEAEAIVFAAARLDHVENVIRPALM-- 88 (225)
Q Consensus 11 GiDGsGKsTq~~~L~~~L~~~g~~v~~~~eP~~t~~ge~ir~~l~~~~~~~~~~~~~~lLfaadr~~~~~~~I~p~L~-- 88 (225)
T Consensus 6 AtIGCGKTTv~~aL~~LFg~WgH--vQ----NDn---------I~-~k~~~--~k-----f~-------~~-~l~~L~~~ 54 (169)
T pfam08303 6 ATIGCGKTTVSLTLNNLFPEWGH--VQ----NDN---------IT-GKGDK--SK-----LM-------KA-ALELLAKD 54 (169)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCC--CC----CCC---------CC-CCCCH--HH-----HH-------HH-HHHHHHHC
T ss_conf 26885599999999997788776--41----787---------76-77751--48-----99-------99-99998615
Q ss_pred CCCEEEECCCCCCCEEHHCCCCCCCHHHHHHHHHHHCC-CC-CCCEEE----EEEEC-----HHHHHHHHHHHHHHHHCC
Q ss_conf 45258723542431000100344424577654442038-89-841156----65203-----487764432111110000
Q gi|254780218|r 89 EGKILLCDRFLDSSYAYQGERDSSQHLFLDSLQEISVQ-EV-MPDCTI----ILDLP-----VDIGLKRVQNRYSLRESA 157 (225)
Q Consensus 89 ~g~iVI~DRy~~S~lAYQ~~~~~~~~~~i~~l~~~~~~-~~-~PDl~i----~Ldv~-----~e~a~~Ri~~R~~~~~~~ 157 (225)
T Consensus 55 ~~~vViaDRNNh~~--------reRkql~~~v~~~~~~~l~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQtI 126 (169)
T pfam08303 55 GSSVVIADRNNHQS--------RERKQLFTWIDQLKDNYLPYDTNLKVIALSFVDEDDLEEVREITRDRVLKRGDNHQSI 126 (169)
T ss_pred CCCEEEEECCCCHH--------HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99679983776459--------9999999999987311267888738999980169986999999999998548775354
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 000021128899999999999999978994999818978899999
Q gi|254780218|r 158 CLDYFERKDVMIHEKRRQIFLDIARNQPDRCHIVDSAHSFQSVAT 202 (225)
Q Consensus 158 ~~d~~E~~~~~~~~kv~~~y~~la~~~~~~~~~IDa~~~~eei~~ 202 (225)
T Consensus 127 ---k~~s~~~~~v~~IM~gFi~r-------fqp~~~~~~PD~~FD 161 (169)
T pfam08303 127 ---KVESMGEKKVMGIMNGFIKR-------FQPVNPAKSPDNMFD 161 (169)
T ss_pred ---ECCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCC
T ss_conf ---35888778999999999983-------378998889641458