BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780218|ref|YP_003064631.1| thymidylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(225 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780218|ref|YP_003064631.1| thymidylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 225
Score = 465 bits (1196), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVD 60
MNSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVD
Sbjct: 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPGGTPAAEAARHVLLSCGVD 60
Query: 61 EFGAEAEAIVFAAARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSL 120
EFGAEAEAIVFAAARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSL
Sbjct: 61 EFGAEAEAIVFAAARLDHVENVIRPALMEGKILLCDRFLDSSYAYQGERDSSQHLFLDSL 120
Query: 121 QEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDI 180
QEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDI
Sbjct: 121 QEISVQEVMPDCTIILDLPVDIGLKRVQNRYSLRESACLDYFERKDVMIHEKRRQIFLDI 180
Query: 181 ARNQPDRCHIVDSAHSFQSVATNILNIVWELVQKRVSPLSSKKDI 225
ARNQPDRCHIVDSAHSFQSVATNILNIVWELVQKRVSPLSSKKDI
Sbjct: 181 ARNQPDRCHIVDSAHSFQSVATNILNIVWELVQKRVSPLSSKKDI 225
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 24.6 bits (52), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 4 GLFISFEGIEGAGKTT 19
GLF + GI G GK+T
Sbjct: 650 GLFTAITGISGGGKST 665
>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 426
Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 1 MNSGLFISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREP 41
M SG+ I I G T L R+L+ KNY++ V P
Sbjct: 135 MQSGVTI-LHTIGGDDTNTTACDLLRYLKEKNYNITVVGLP 174
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 24.3 bits (51), Expect = 2.1, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 6 FISFEGIEGAGKTTHISLLK 25
FI G+ G+GK+T ++L+K
Sbjct: 503 FIHIRGVGGSGKSTLMNLIK 522
>gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 89
Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 137 DLPVDIGLKRVQNRYSLRESACLDYFERKDV 167
D+ IGL R+ SLR S+ L Y ERKDV
Sbjct: 49 DVNSKIGLGRL---ISLR-SSLLKYLERKDV 75
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 23.9 bits (50), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 7 ISFEGIEGAGKTTHISLLKRF 27
I+ G GAGKT+ SL+ RF
Sbjct: 319 IALVGDSGAGKTSIFSLILRF 339
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 468
Score = 23.5 bits (49), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 6 FISFEGIEGAGKTTHISLLKRFLQRKNYDVHVTREPG 42
FI+ G G K++ ++L+ L++ YDV + G
Sbjct: 115 FIAVTGTNG--KSSTVALISHVLRKNGYDVQLGGNIG 149
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 2 NSGLFISFEGIEGAGKTT 19
N GL + F G G GKT+
Sbjct: 364 NKGLILCFVGPPGVGKTS 381
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 9 FEGIEGAGKTTHISLLKRFL 28
F G+ G GKTT + + RFL
Sbjct: 223 FFGLSGTGKTTLSASVDRFL 242
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 23.1 bits (48), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 SGLFISFEGIEGAGKTTHISLLKRF 27
SG + G G+GK+T I+LL R
Sbjct: 378 SGKMTALVGPSGSGKSTIINLLMRM 402
>gi|254780292|ref|YP_003064705.1| 50S ribosomal protein L13 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 155
Score = 22.7 bits (47), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 170 HEKRRQIFLDIARNQP 185
HE ++ +F+DIA+ P
Sbjct: 134 HEAQKPVFMDIAKMNP 149
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,152
Number of Sequences: 1233
Number of extensions: 5557
Number of successful extensions: 29
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 14
length of query: 225
length of database: 328,796
effective HSP length: 71
effective length of query: 154
effective length of database: 241,253
effective search space: 37152962
effective search space used: 37152962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)