Query gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 117
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 17:31:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780219.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3f3f_C Nucleoporin NUP85; str 25.2 52 0.0015 14.9 4.9 88 5-95 63-150 (168)
2 >2d2s_A Exocyst complex compon 15.5 69 0.002 14.2 1.4 60 56-115 38-97 (105)
3 >1b43_A Protein (FEN-1); nucle 14.6 63 0.0019 14.4 1.0 28 3-30 8-36 (77)
4 >2waq_C DNA-directed RNA polym 14.6 70 0.0021 14.2 1.2 24 78-101 30-53 (63)
5 >1oao_C CODH, carbon monoxide 12.7 72 0.0021 14.1 0.8 30 74-103 81-116 (142)
6 >1sct_A Hemoglobin II (carbonm 12.4 1.1E+02 0.0031 13.1 6.0 31 30-60 23-53 (150)
7 >2rio_A Serine/threonine-prote 11.4 43 0.0013 15.4 -0.7 51 46-96 55-112 (135)
8 >1hm6_A Annexin 1; phospholipi 11.0 1E+02 0.0031 13.2 1.2 19 82-100 38-56 (175)
9 >1svf_B Protein (fusion glycop 9.1 1.3E+02 0.0038 12.6 1.1 12 39-50 16-27 (38)
10 >1e6y_B Methyl-coenzyme M redu 8.7 83 0.0025 13.7 -0.0 13 46-58 131-143 (160)
No 1
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:219-386)
Probab=25.20 E-value=52 Score=14.90 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999610547851666899984335577777788888874713577778899999999999999999999999
Q gi|254780219|r 5 IKRFLFPLLALLGSCDDNPKDPIVQFKQMKYESQESKKSLSDALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELL 84 (117)
Q Consensus 5 ikrflfpllallgscddnpkdpivqfkqmkyesqeskkslsdalfktypdtmdkintvqtalrnlhnaiskmeselkell 84 (117)
+-+.+-.++.++..+.-..++ +|.|-++=..+-+..|++.-|...|.+-|.+..+---+-.-.++|.+.-..-.|++
T Consensus 63 l~~~~~~ll~~mp~~~~s~~~---~~~~Wk~w~~~~~~~l~~~~f~~~~e~~~~L~~l~~Il~Gd~~~i~~~~~~WyE~~ 139 (168)
T 3f3f_C 63 SFDAVSDSIELLKQYPKDSSS---TFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSRTWYESF 139 (168)
T ss_dssp HHHHHHHHHHHHTTCCSSCHH---HHHHHHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH
T ss_conf 999999999973248763348---99999999999999987510369878999999999998498899998723199999
Q ss_pred HHHHHHHCHHH
Q ss_conf 99986437434
Q gi|254780219|r 85 SDILLKRHPDE 95 (117)
Q Consensus 85 sdillkrhpde 95 (117)
..-+|-.+|+.
T Consensus 140 va~lly~~Pt~ 150 (168)
T 3f3f_C 140 CGFLLYYIPSL 150 (168)
T ss_dssp HHHHHHTCCCG
T ss_pred HHHHHHCCCCC
T ss_conf 87751027775
No 2
>>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} (A:1-105)
Probab=15.54 E-value=69 Score=14.20 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 777788999999999999999999999999998643743422137521135679997764
Q gi|254780219|r 56 MDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKLKED 115 (117)
Q Consensus 56 mdkintvqtalrnlhnaiskmeselkellsdillkrhpdeidkinpiknsaneisklked 115 (117)
.++++..+.-|.++-..+..-+.-+-+|++=-.-.|..+-+.|..-.-++.++|++|+..
T Consensus 38 V~~L~~les~L~~ls~~~~~ee~illnll~LK~~qrr~~I~~KLt~~i~s~~d~~~L~s~ 97 (105)
T 2d2s_A 38 VETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSG 97 (105)
T ss_dssp HHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999987252346752147999999999999999999999998336987889999
No 3
>>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:212-288)
Probab=14.64 E-value=63 Score=14.42 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCCHHHHH
Q ss_conf 27999999999996105478-51666899
Q gi|254780219|r 3 FKIKRFLFPLLALLGSCDDN-PKDPIVQF 30 (117)
Q Consensus 3 fkikrflfpllallgscddn-pkdpivqf 30 (117)
|.+.+..|.-++.|-.|||| |.-|=|--
T Consensus 8 ~g~~~~q~id~~~L~G~d~ni~GV~GiG~ 36 (77)
T 1b43_A 8 LKLTREKLIELAILVGTDYNPGGIKGIGL 36 (77)
T ss_dssp HTCCHHHHHHHHHHHCCTTSTTCSTTCCH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 29789999999997286656565896249
No 4
>>2waq_C DNA-directed RNA polymerase RPO1C subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_C 3hkz_C 2pmz_C (C:1-63)
Probab=14.58 E-value=70 Score=14.18 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHCHHHHHCCCC
Q ss_conf 999999999986437434221375
Q gi|254780219|r 78 SELKELLSDILLKRHPDEIDKINP 101 (117)
Q Consensus 78 selkellsdillkrhpdeidkinp 101 (117)
+.|++++++--.--.-||||||--
T Consensus 30 ~dLr~~i~n~~i~~T~deIDkIid 53 (63)
T 2waq_C 30 EDLKNLISNKEVLVTRDEIDKIFD 53 (63)
T ss_dssp THHHHHHHHHHHTTTCCCSTTHHH
T ss_pred HHHHHHHCCCCEECCHHHHHHHHH
T ss_conf 999987435525428999999999
No 5
>>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (C:588-729)
Probab=12.71 E-value=72 Score=14.11 Aligned_cols=30 Identities=37% Similarity=0.443 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHC-----H-HHHHCCCCCC
Q ss_conf 9999999999999986437-----4-3422137521
Q gi|254780219|r 74 SKMESELKELLSDILLKRH-----P-DEIDKINPIK 103 (117)
Q Consensus 74 skmeselkellsdillkrh-----p-deidkinpik 103 (117)
--|-++|||.+.|.|.+|. | |-+|||..-.
T Consensus 81 VWMPk~LKe~~~~~l~~~~~~~~ip~d~~dkIA~E~ 116 (142)
T 1oao_C 81 VWMPKSLKDFLHDEFVRRSVEEGLGEDFIDKIADET 116 (142)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTTSCTTHHHHSBCTT
T ss_pred EECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 878199988877888777887428777776516754
No 6
>>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} (A:)
Probab=12.36 E-value=1.1e+02 Score=13.13 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 9984335577777788888874713577778
Q gi|254780219|r 30 FKQMKYESQESKKSLSDALFKTYPDTMDKIN 60 (117)
Q Consensus 30 fkqmkyesqeskkslsdalfktypdtmdkin 60 (117)
+..++-..++--..+-..||+.||++.+.-+
T Consensus 23 W~~v~~~~~~~g~~~f~~lF~~~P~~k~~F~ 53 (150)
T 1sct_A 23 WGVLSADIEATGLMLMSNLFTLRPDTKTYFT 53 (150)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHCGGGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999825898999999999998900978871
No 7
>>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3fbv_A* (A:300-434)
Probab=11.43 E-value=43 Score=15.42 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=34.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCHHHH
Q ss_conf 888874713577778899999999999999999999999999-------864374342
Q gi|254780219|r 46 DALFKTYPDTMDKINTVQTALRNLHNAISKMESELKELLSDI-------LLKRHPDEI 96 (117)
Q Consensus 46 dalfktypdtmdkintvqtalrnlhnaiskmeselkellsdi-------llkrhpdei 96 (117)
+.|-|...-.-+++--.--|+||..+-+..|..++++.++++ ...|.|+-+
T Consensus 55 ~~l~k~R~Y~~~sv~DLLR~IRNk~~Hy~elp~~~k~~lG~~pdgf~~YF~~rFP~Ll 112 (135)
T 2rio_A 55 DNLERYRKYHSSKLMDLLRALRNKYHHFMDLPEDIAELMGPVPDGFYDYFTKRFPNLL 112 (135)
T ss_dssp C-----CCCCSSCHHHHHHHHHHHHHTGGGSCHHHHHHTCSTTHHHHHHHHHHCTTHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCHH
T ss_conf 8653003778665999999998655435435899998618995479999998688236
No 8
>>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} (A:1-16,A:114-272)
Probab=10.96 E-value=1e+02 Score=13.16 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCHHHHHCCC
Q ss_conf 9999998643743422137
Q gi|254780219|r 82 ELLSDILLKRHPDEIDKIN 100 (117)
Q Consensus 82 ellsdillkrhpdeidkin 100 (117)
|||-++|+.|.-.||..|+
T Consensus 38 ~~l~e~l~~rtn~ei~~i~ 56 (175)
T 1hm6_A 38 DTLNEILASRTNREIREIN 56 (175)
T ss_dssp HHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
T ss_conf 9999999818999999999
No 9
>>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} (B:)
Probab=9.08 E-value=1.3e+02 Score=12.64 Aligned_cols=12 Identities=58% Similarity=0.570 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 777778888887
Q gi|254780219|r 39 ESKKSLSDALFK 50 (117)
Q Consensus 39 eskkslsdalfk 50 (117)
.-.|||||||-.
T Consensus 16 avnkslsdalqh 27 (38)
T 1svf_B 16 AVNKSLSDALQH 27 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 998879999999
No 10
>>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI enzyme; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} (B:24-183)
Probab=8.74 E-value=83 Score=13.73 Aligned_cols=13 Identities=46% Similarity=0.882 Sum_probs=8.5
Q ss_pred HHHHHHCCHHHHH
Q ss_conf 8888747135777
Q gi|254780219|r 46 DALFKTYPDTMDK 58 (117)
Q Consensus 46 dalfktypdtmdk 58 (117)
.|.+-+||.|||-
T Consensus 131 aAv~G~YPQt~D~ 143 (160)
T 1e6y_B 131 SAVWGSYPQTMDL 143 (160)
T ss_dssp HHHHTTTTTSSSC
T ss_pred HHHHCCCCCCCCC
T ss_conf 9987369887787
Done!