Query gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 117
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 17:33:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780219.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a77a1 a.60.7.1 (A:209-316) F 29.0 13 0.00094 16.2 1.9 20 9-29 6-26 (108)
2 d2r7ga1 a.74.1.3 (A:380-578) R 16.4 29 0.0021 14.1 1.6 22 11-32 20-41 (199)
3 d1rxwa1 a.60.7.1 (A:220-324) F 14.8 36 0.0027 13.6 1.8 22 9-31 6-27 (105)
4 d1axna_ a.65.1.1 (A:) Annexin 13.5 40 0.0029 13.3 2.5 15 83-97 112-126 (323)
5 d1hm6a_ a.65.1.1 (A:) Annexin 11.9 44 0.0032 13.0 2.6 33 66-99 119-151 (343)
6 d1i4aa_ a.65.1.1 (A:) Annexin 11.2 47 0.0034 12.9 2.6 18 82-99 97-114 (309)
7 d1etea_ a.26.1.2 (A:) Flt3 lig 10.7 44 0.0032 13.1 1.2 49 42-90 20-78 (134)
8 d1e6yb2 d.58.31.2 (B:2002-2185 10.0 28 0.0021 14.2 -0.0 14 45-58 153-166 (184)
9 d1e6vb2 d.58.31.2 (B:7-189) Be 9.7 30 0.0021 14.1 -0.0 14 45-58 152-165 (183)
10 d2ct5a1 g.37.1.6 (A:8-67) Zinc 9.5 54 0.0039 12.6 1.4 15 84-98 41-55 (60)
No 1
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=28.98 E-value=13 Score=16.16 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.3
Q ss_pred HHHHHHHHHCCCCC-CCCHHHH
Q ss_conf 99999996105478-5166689
Q gi|254780219|r 9 LFPLLALLGSCDDN-PKDPIVQ 29 (117)
Q Consensus 9 lfpllallgscddn-pkdpivq 29 (117)
+.-+.+|+| ||+| |.=|=|.
T Consensus 6 ~IDl~iL~G-~dyn~pGV~GIG 26 (108)
T d1a77a1 6 LIDIAIFMG-TDYNPGGVKGIG 26 (108)
T ss_dssp HHHHHHHHC-CTTSTTCSTTCC
T ss_pred HHHHHHHHC-CCCCCCCCCCCC
T ss_conf 999999958-768877899917
No 2
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.36 E-value=29 Score=14.14 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=16.5
Q ss_pred HHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999961054785166689998
Q gi|254780219|r 11 PLLALLGSCDDNPKDPIVQFKQ 32 (117)
Q Consensus 11 pllallgscddnpkdpivqfkq 32 (117)
-|..++.+|+.||.+-|.+-.+
T Consensus 20 ~L~~~f~~C~~dp~~~i~~rv~ 41 (199)
T d2r7ga1 20 NLISYFNNCTVNPKESILKRVK 41 (199)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998489987999999999
No 3
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.82 E-value=36 Score=13.55 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=15.9
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999996105478516668999
Q gi|254780219|r 9 LFPLLALLGSCDDNPKDPIVQFK 31 (117)
Q Consensus 9 lfpllallgscddnpkdpivqfk 31 (117)
+.-+.+|.| ||-+|.-|=|--|
T Consensus 6 ~iD~~~L~G-sDn~pGV~GIG~k 27 (105)
T d1rxwa1 6 LIDIAILVG-TDYNEGVKGVGVK 27 (105)
T ss_dssp HHHHHHHHC-BTTBCCCTTCCHH
T ss_pred HHHHHHHHC-CCCCCCCCCCCHH
T ss_conf 999999958-8788899993789
No 4
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.49 E-value=40 Score=13.33 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=5.8
Q ss_pred HHHHHHHHHCHHHHH
Q ss_conf 999998643743422
Q gi|254780219|r 83 LLSDILLKRHPDEID 97 (117)
Q Consensus 83 llsdillkrhpdeid 97 (117)
+|-+||+-|.|+|+.
T Consensus 112 ~Lieil~~rs~~e~~ 126 (323)
T d1axna_ 112 ALIEILTTRTSRQMK 126 (323)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHCCCHHHHH
T ss_conf 752354518979999
No 5
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Probab=11.91 E-value=44 Score=13.05 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCC
Q ss_conf 9999999999999999999999864374342213
Q gi|254780219|r 66 LRNLHNAISKMESELKELLSDILLKRHPDEIDKI 99 (117)
Q Consensus 66 lrnlhnaiskmeselkellsdillkrhpdeidki 99 (117)
-+.+|.|++..-.. .++|-+||..|.++|+..|
T Consensus 119 A~~l~~A~kG~gt~-e~~LieIl~trs~~ei~~I 151 (343)
T d1hm6a_ 119 ADELRAAMKGLGTD-EDTLNEILASRTNREIREI 151 (343)
T ss_dssp HHHHHHHHSSSCCC-HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHCCCCH-HHHHHHHEEECCHHHHHHH
T ss_conf 99999997379963-6757422010788999999
No 6
>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.18 E-value=47 Score=12.91 Aligned_cols=18 Identities=44% Similarity=0.708 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCHHHHHCC
Q ss_conf 999999864374342213
Q gi|254780219|r 82 ELLSDILLKRHPDEIDKI 99 (117)
Q Consensus 82 ellsdillkrhpdeidki 99 (117)
+.|-+||.-|.|+|+..|
T Consensus 97 ~~LieIl~trs~~e~~~i 114 (309)
T d1i4aa_ 97 GCLIEILASRTPEEIRRI 114 (309)
T ss_dssp HHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHEECCHHHHHHH
T ss_conf 775112100788999999
No 7
>d1etea_ a.26.1.2 (A:) Flt3 ligand {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.70 E-value=44 Score=13.06 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q ss_conf 77888888747135777---7889999999999999999-------9999999999864
Q gi|254780219|r 42 KSLSDALFKTYPDTMDK---INTVQTALRNLHNAISKME-------SELKELLSDILLK 90 (117)
Q Consensus 42 kslsdalfktypdtmdk---intvqtalrnlhnaiskme-------selkellsdillk 90 (117)
..|||-|...||-||.. -..+-.|+-.|+-|---|+ |+++.||.++.-.
T Consensus 20 ~~LsdyLL~DYPVtv~sNLq~D~~C~alW~L~laqr~~~rl~~VAGs~m~~LLe~v~te 78 (134)
T d1etea_ 20 RELSDYLLQDYPVTVASNLQDDELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTE 78 (134)
T ss_dssp HHHHTTSBTTCEEEEESCBCCCTTTHHHHHHHHHHHHHHHHHTTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76228887538824445478077899999999999999999987436789999998626
No 8
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=9.99 E-value=28 Score=14.18 Aligned_cols=14 Identities=43% Similarity=0.821 Sum_probs=9.3
Q ss_pred HHHHHHHCCHHHHH
Q ss_conf 88888747135777
Q gi|254780219|r 45 SDALFKTYPDTMDK 58 (117)
Q Consensus 45 sdalfktypdtmdk 58 (117)
..|.+-+||.|||-
T Consensus 153 kaAv~G~YPqt~D~ 166 (184)
T d1e6yb2 153 KSAVWGSYPQTMDL 166 (184)
T ss_dssp HHHHHTTTTTSSSC
T ss_pred HHHHHCCCCCCCCC
T ss_conf 89997469887787
No 9
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=9.69 E-value=30 Score=14.08 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=9.2
Q ss_pred HHHHHHHCCHHHHH
Q ss_conf 88888747135777
Q gi|254780219|r 45 SDALFKTYPDTMDK 58 (117)
Q Consensus 45 sdalfktypdtmdk 58 (117)
..|.+-+||.|||-
T Consensus 152 kaAv~G~YPqt~D~ 165 (183)
T d1e6vb2 152 KAAVFGRYPQTIDY 165 (183)
T ss_dssp HHHHHTTTTTSSSC
T ss_pred HHHHHCCCCCCCCC
T ss_conf 89997469887787
No 10
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=54 Score=12.56 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=10.1
Q ss_pred HHHHHHHHCHHHHHC
Q ss_conf 999986437434221
Q gi|254780219|r 84 LSDILLKRHPDEIDK 98 (117)
Q Consensus 84 lsdillkrhpdeidk 98 (117)
|+.-|-+|||+|.-+
T Consensus 41 l~~HL~~rHp~ef~~ 55 (60)
T d2ct5a1 41 LSYHLEKNHPEEFCE 55 (60)
T ss_dssp HHHHHHHSCHHHHHH
T ss_pred HHHHHHHCCHHHHHH
T ss_conf 999988509799998
Done!