RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780219|ref|YP_003064632.1| hypothetical protein
CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62]
         (117 letters)



>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 244

 Score = 27.7 bits (61), Expect = 0.31
 Identities = 15/125 (12%), Positives = 40/125 (32%), Gaps = 8/125 (6%)

Query: 1   MHFKIKRFLFPLLALLGSCDDNPK----DPIVQFKQMKY----ESQESKKSLSDALFKTY 52
             +   R         G   +       +P   +   K     + ++S K+  + L   +
Sbjct: 120 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179

Query: 53  PDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKRHPDEIDKINPIKNSANEISKL 112
           P+ +     V+ A + ++ A    + +  EL          + + K          I   
Sbjct: 180 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239

Query: 113 KEDLS 117
           +++++
Sbjct: 240 QKEIN 244


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 6/30 (20%)

Query: 76  MESELKELLSDILLKR------HPDEIDKI 99
           M   LK+ L D  ++R        D IDKI
Sbjct: 670 MPKSLKDFLHDEFVRRSVEEGLGEDFIDKI 699


>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP
          oxidase) {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 204

 Score = 24.0 bits (51), Expect = 3.4
 Identities = 2/13 (15%), Positives = 6/13 (46%)

Query: 20 DDNPKDPIVQFKQ 32
          +  P +P+   + 
Sbjct: 13 EAPPANPMEVLRN 25


>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase
          alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId:
          47881]}
          Length = 62

 Score = 23.9 bits (52), Expect = 3.6
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 26 PIVQFKQMKYESQESKKSLSDALFKTYPDTMDK 58
          P++        + E K++LS  L +   +   +
Sbjct: 1  PMISCDMRYGRTDEQKRALSAGLLRVISEATGE 33


>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 395

 Score = 23.5 bits (49), Expect = 5.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 59 INTVQTALRNLHNAISKM---ESELKELLSDIL 88
          I  +  A RN ++ IS     E  L E +++ L
Sbjct: 2  IKGLTQASRNANDGISIAQTTEGALNE-INNNL 33


>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 187

 Score = 23.3 bits (50), Expect = 5.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 24 KDPIVQFKQMKYESQESK 41
          KDP ++F Q+  ++ E+K
Sbjct: 5  KDPTIEFCQLGLDTFETK 22


>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus
           thuringiensis, strain Kyushuensis [TaxId: 1428]}
          Length = 227

 Score = 23.2 bits (50), Expect = 5.4
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 50  KTYPDTMDKINTVQTALRNLHNAISKMESELKELLSDIL 88
              P++   + T+  ++      IS M  +LK+++ ++L
Sbjct: 67  NGIPNSAI-VKTLNQSVIQQTVEISVMVEQLKKIIQEVL 104


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 23.3 bits (49), Expect = 5.6
 Identities = 6/36 (16%), Positives = 14/36 (38%)

Query: 51  TYPDTMDKINTVQTALRNLHNAISKMESELKELLSD 86
           T  DT  ++      L  +  A +++  +    L+ 
Sbjct: 254 TTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTH 289


>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
          MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
          Length = 129

 Score = 23.3 bits (50), Expect = 5.8
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 26 PIVQFKQMKYESQESKKSLSDALFKTYPDTMD 57
          P+++F      +    KSL DA      D   
Sbjct: 1  PLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFG 32


>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas
          sp., DmpI [TaxId: 306]}
          Length = 59

 Score = 23.1 bits (50), Expect = 7.1
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 26 PIVQFKQMKYESQESKKSLSDALFKTYPDTMDK 58
          PI Q   ++  + E K++L   + +   +++D 
Sbjct: 1  PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDA 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,097
Number of extensions: 16927
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 21
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)