Query gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 97 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 17:36:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780220.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3f6n_A Virion-associated prot 21.5 66 0.002 14.7 4.1 47 45-92 8-54 (129) 2 >3fn2_A Putative sensor histid 21.0 29 0.00085 16.8 0.4 12 54-65 46-57 (59) 3 >1ycd_A Hypothetical 27.3 kDa 16.3 73 0.0022 14.5 1.6 23 73-95 36-58 (58) 4 >3bg2_A DGTP triphosphohydrola 15.3 93 0.0027 13.9 3.4 63 22-91 8-79 (144) 5 >3ftb_A Histidinol-phosphate a 13.1 1.1E+02 0.0032 13.5 3.3 33 56-88 2-34 (50) 6 >3faj_A ORF131, putative uncha 11.9 1.2E+02 0.0035 13.3 2.4 19 78-96 69-87 (151) 7 >2wq1_A General control protei 10.6 1.3E+02 0.0038 13.1 1.8 22 45-66 6-27 (33) 8 >1n81_A Plasmodium falciparum 9.9 1.1E+02 0.0033 13.4 1.0 15 14-28 23-37 (92) 9 >2hfh_A Genesis, HFH-2; HNF-3 9.5 1.4E+02 0.0042 12.8 1.7 52 10-61 13-64 (109) 10 >1ywm_A C protein alpha-antige 8.6 1.6E+02 0.0046 12.6 1.5 21 39-59 39-59 (62) No 1 >>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus} (A:) Probab=21.48 E-value=66 Score=14.74 Aligned_cols=47 Identities=30% Similarity=0.329 Sum_probs=34.4 Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 011321699987345668885455524788600229999999999986 Q gi|254780220|r 45 QDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIE 92 (97) Q Consensus 45 qddieynlseiksfenqilaisnklekgqkpkylhlkeaiqkivktie 92 (97) |..|+--+++|++.+..|-+|+.|+.-+. |.--.|..+-.||++.|- T Consensus 8 ~~eI~el~~~ik~l~~~i~~Il~Kl~s~~-~t~~~lEsiAAKIIkDis 54 (129) T 3f6n_A 8 QKEVSEILSDQKSMKADIKAILELLGSQN-PIKESLETVAAKIVNDLT 54 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999997427997-203468999999999999 No 2 >>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940} (A:48-106) Probab=21.02 E-value=29 Score=16.83 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHH Q ss_conf 987345668885 Q gi|254780220|r 54 EIKSFENQILAI 65 (97) Q Consensus 54 eiksfenqilai 65 (97) .-||||||||.- T Consensus 46 D~K~Fee~IlE~ 57 (59) T 3fn2_A 46 DEKXFEEEILEK 57 (59) T ss_dssp EHHHHHHHHC-- T ss_pred CHHHHHHHHHHH T ss_conf 288899998760 No 3 >>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} (A:44-101) Probab=16.31 E-value=73 Score=14.48 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 88600229999999999986420 Q gi|254780220|r 73 QKPKYLHLKEAIQKIVKTIEQNE 95 (97) Q Consensus 73 qkpkylhlkeaiqkivktieqne 95 (97) .--+|+.+.||++-++.-|.+|. T Consensus 36 d~s~~lgl~eai~yv~dhIk~nG 58 (58) T 1ycd_A 36 EISHELDISEGLKSVVDHIKANG 58 (58) T ss_dssp SSGGGCCCHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHHCCC T ss_conf 53106549999999999850127 No 4 >>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:120-179,A:361-444) Probab=15.31 E-value=93 Score=13.90 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHH--HHHHHCCCCCHHHHHHCHHHHHHHH--HHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHH Q ss_conf 7799988766568--8887418874011321699987345--6688854555247-----8860022999999999998 Q gi|254780220|r 22 YEDAIRSQFENEI--RYYKSMHPSTQDDIEYNLSEIKSFE--NQILAISNKLEKG-----QKPKYLHLKEAIQKIVKTI 91 (97) Q Consensus 22 yedairsqfenei--ryyksmhpstqddieynlseiksfe--nqilaisnklekg-----qkpkylhlkeaiqkivkti 91 (97) =|+||+.-|.+.. .+-+.+.+..+ ..+..|| -|-+-|-.+||++ +.|.-..+..+.++|+.++ T Consensus 8 GE~ai~~~f~~~~~~~~~~~~~~~~~-------~d~~~FeGNAQ~~Rilt~l~~~~~~gl~~~~v~~~e~~g~~ii~~L 79 (144) T 3bg2_A 8 GEKAIGEFFKNGYGKRYKDSLTAKEY-------QDLIKFEGNANGFKVLSQSKPGAQGGLNSREVIEKEIAGYEILSTL 79 (144) T ss_dssp HHHHHHHHHHTSGGGGGGGGSCHHHH-------HHHHTCCHHHHHHHHHHCCBTTBTTTTTSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH-------HHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 29999999984168411333227777-------7654134524466888630247678748899999999999999999 No 5 >>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} (A:41-76,A:246-259) Probab=13.06 E-value=1.1e+02 Score=13.53 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 734566888545552478860022999999999 Q gi|254780220|r 56 KSFENQILAISNKLEKGQKPKYLHLKEAIQKIV 88 (97) Q Consensus 56 ksfenqilaisnklekgqkpkylhlkeaiqkiv 88 (97) |||-|.|-.--..|+|-..-+|-.||..|..-. T Consensus 2 KSFtnNidEaIknl~kYPD~~YR~Lkk~I~eYl 34 (50) T 3ftb_A 2 KSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYL 34 (50) T ss_dssp HHHHTTHHHHHHGGGSCCCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999987603699976999999999986 No 6 >>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural protein, DNA-binding protein; 1.70A {Acidianus two-tailed virus} (A:) Probab=11.88 E-value=1.2e+02 Score=13.32 Aligned_cols=19 Identities=47% Similarity=0.466 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 2299999999999864203 Q gi|254780220|r 78 LHLKEAIQKIVKTIEQNEK 96 (97) Q Consensus 78 lhlkeaiqkivktieqnek 96 (97) -.+|++|.+|+|+|..-++ T Consensus 69 E~akeaIHeiiK~IreA~k 87 (151) T 3faj_A 69 ERTKEAIHAIVKMISDAMK 87 (151) T ss_dssp HHHHHHHHHHHHHHHHHHG T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 7899999999999999743 No 7 >>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A 1zik_A ... (A:) Probab=10.62 E-value=1.3e+02 Score=13.07 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=17.3 Q ss_pred HHHHHHCHHHHHHHHHHHHHHH Q ss_conf 0113216999873456688854 Q gi|254780220|r 45 QDDIEYNLSEIKSFENQILAIS 66 (97) Q Consensus 45 qddieynlseiksfenqilais 66 (97) .|.||-+||.|-..||.|-.+. T Consensus 6 edkiee~lskiyh~eneiar~k 27 (33) T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNT 27 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998689999999 No 8 >>1n81_A Plasmodium falciparum gamete antigen 27/25; gametocyte, helical, helix-turn-helix, PXXP, unknown function; 2.10A {Plasmodium falciparum 3D7} (A:1-92) Probab=9.89 E-value=1.1e+02 Score=13.42 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 842355787799988 Q gi|254780220|r 14 LSSCSDYVYEDAIRS 28 (97) Q Consensus 14 lsscsdyvyedairs 28 (97) ...||||+|--..-| T Consensus 23 fhacsdyiyllmtls 37 (92) T 1n81_A 23 FHACSDYIYLLMTLS 37 (92) T ss_dssp HHHHHHHHHHHHHTT T ss_pred EHHHHHHHHHHHHCC T ss_conf 224888999998626 No 9 >>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} (A:) Probab=9.55 E-value=1.4e+02 Score=12.84 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=39.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHH Q ss_conf 9999842355787799988766568888741887401132169998734566 Q gi|254780220|r 10 LLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQ 61 (97) Q Consensus 10 lltllsscsdyvyedairsqfeneiryyksmhpstqddieynlseiksfenq 61 (97) -+.+++|-..-.---.|-..++....||+.-.+.-|.-|-.|||--+.|+.. T Consensus 13 ~~AI~~sp~~~ltL~eIY~~i~~~fp~fr~~~~gWkNSIRHnLSlnk~F~kv 64 (109) T 2hfh_A 13 TMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKI 64 (109) T ss_dssp HHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCC T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHCC T ss_conf 9999859888713999999999868635678886156601451073786537 No 10 >>1ywm_A C protein alpha-antigen; beta sandwich, fibronectin fold, antiparallel three-helix bundle, surface active protein; 1.86A {Streptococcus agalactiae A909} PDB: 2o0i_1 (A:124-185) Probab=8.56 E-value=1.6e+02 Score=12.60 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=14.2 Q ss_pred HCCCCCHHHHHHCHHHHHHHH Q ss_conf 418874011321699987345 Q gi|254780220|r 39 SMHPSTQDDIEYNLSEIKSFE 59 (97) Q Consensus 39 smhpstqddieynlseiksfe 59 (97) .-.|.||+||.-...|....| T Consensus 39 DNNPKTQ~DIdnKI~EVnelE 59 (62) T 1ywm_A 39 DNNPKTQTDIDSKIVEVNELE 59 (62) T ss_dssp HHSCCCHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHH T ss_conf 479752123432334046466 Done!