BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] (97 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] gi|254039897|gb|ACT56693.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] Length = 97 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN Sbjct: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60 Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE Sbjct: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97 >gi|327259028|ref|XP_003214340.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Anolis carolinensis] Length = 451 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62 D S+F+N YKSM PS + DIE L ++K + +I Sbjct: 184 DEFSSRFKNLAHQYKSMFPSLEIDIEGQLKKLKGYAEKI 222 >gi|326921112|ref|XP_003206808.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Meleagris gallopavo] Length = 416 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62 D S+F+N + YKSM P+ + DIE L ++K + +I Sbjct: 149 DEFSSRFKNLAQQYKSMFPTLEIDIEGQLKKLKGYAEKI 187 >gi|302407784|ref|XP_003001727.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261359448|gb|EEY21876.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 494 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 36 YYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQ 93 Y+++M +TQ I N+ KS + +L + ++L K K K L ++K K +E+ Sbjct: 97 YFENMRSNTQALINTNIETEKSIKGSVLPVLDRLHKEIKAKSKELTSGVEKTAKEVEK 154 >gi|127514650|ref|YP_001095847.1| hypothetical protein Shew_3722 [Shewanella loihica PV-4] gi|126639945|gb|ABO25588.1| protein of unknown function DUF885 [Shewanella loihica PV-4] Length = 594 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Query: 27 RSQFENEIRYYKSMHPSTQDDI-EYNLSEIKSFENQILAISNKL-EKGQKPKYLH-LKEA 83 ++ +EN +RYY ++ P T D++ + L E+K ++ AI +KL +G +LH L+ Sbjct: 274 KAFYENRVRYYTTL-PMTADEVHQLGLKEVKRIRAEMQAIIDKLGYQGSFADFLHFLRTD 332 Query: 84 IQKIVKTIEQNEKE 97 Q KT EQ KE Sbjct: 333 PQFYAKTPEQLLKE 346 >gi|292657149|ref|YP_003537045.1| hypothetical protein HVO_C0028 [Haloferax volcanii DS2] gi|291373040|gb|ADE05266.1| hypothetical protein HVO_C0028 [Haloferax volcanii DS2] Length = 324 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 12 TLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKL 69 TLL+ + Y+ R N I YY P+ +DD E++++ +K L +SN+ Sbjct: 221 TLLNHLGSFYYKGVWRP-ISNRIGYYTIHGPAEEDDREFHITNLKRARQNFLKLSNQF 277 Searching..................................................done Results from round 2 CONVERGED! >gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] gi|254039897|gb|ACT56693.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62] Length = 97 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 97/97 (100%), Positives = 97/97 (100%) Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN Sbjct: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60 Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE Sbjct: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97 >gi|127514650|ref|YP_001095847.1| hypothetical protein Shew_3722 [Shewanella loihica PV-4] gi|126639945|gb|ABO25588.1| protein of unknown function DUF885 [Shewanella loihica PV-4] Length = 594 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Query: 27 RSQFENEIRYYKSMHPSTQDDI-EYNLSEIKSFENQILAISNKL-EKGQKPKYLH-LKEA 83 ++ +EN +RYY ++ P T D++ + L E+K ++ AI +KL +G +LH L+ Sbjct: 274 KAFYENRVRYYTTL-PMTADEVHQLGLKEVKRIRAEMQAIIDKLGYQGSFADFLHFLRTD 332 Query: 84 IQKIVKTIEQNEKE 97 Q KT EQ KE Sbjct: 333 PQFYAKTPEQLLKE 346 >gi|317471177|ref|ZP_07930548.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901392|gb|EFV23335.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 739 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60 MK+ L + +L+L S YVY + S ENE+ S+H + ++ EI S N Sbjct: 7 MKRILLFIVVLSLGLFSSLYVYSRVLHSNLENEV--ISSLHEVSGQSVKILRKEILSEIN 64 Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVK 89 + ISN++ + + L E+ QK+ + Sbjct: 65 LLDGISNEISEKRLKDPKKLAESFQKVTE 93 >gi|302407784|ref|XP_003001727.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261359448|gb|EEY21876.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 494 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 36 YYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQ 93 Y+++M +TQ I N+ KS + +L + ++L K K K L ++K K +E+ Sbjct: 97 YFENMRSNTQALINTNIETEKSIKGSVLPVLDRLHKEIKAKSKELTSGVEKTAKEVEK 154 >gi|149195582|ref|ZP_01872639.1| hypothetical protein LNTAR_16858 [Lentisphaera araneosa HTCC2155] gi|149141044|gb|EDM29440.1| hypothetical protein LNTAR_16858 [Lentisphaera araneosa HTCC2155] Length = 963 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%) Query: 9 PLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDD---IEYNLSEIKSFENQILAI 65 PLL ++CSDY Y+ A S E RYY + +++ +E++LSEI E ++ + Sbjct: 692 PLLKTTNTCSDYQYK-AWTSYDEKNQRYYIWSVQNNKNETYNLEFDLSEIDVTEGALVTV 750 Query: 66 S--NKLEKGQKPKYLHL 80 + + G+ + LHL Sbjct: 751 ETVSPIRHGEMTQLLHL 767 >gi|327259028|ref|XP_003214340.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Anolis carolinensis] Length = 451 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62 D S+F+N YKSM PS + DIE L ++K + +I Sbjct: 184 DEFSSRFKNLAHQYKSMFPSLEIDIEGQLKKLKGYAEKI 222 >gi|297744153|emb|CBI37123.3| unnamed protein product [Vitis vinifera] Length = 2295 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 23 EDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKE 82 ED I+ Q E + + ++ +Y L EI FE +I +NKL+K Q P+ L LKE Sbjct: 212 EDVIQEQESCE----REASKAKKEQAKY-LKEITQFEKKISDKNNKLDKNQ-PELLKLKE 265 Query: 83 AIQKIVKTIEQNEKE 97 + +I I+ + KE Sbjct: 266 EMSRINSKIKSSRKE 280 >gi|194214159|ref|XP_001499981.2| PREDICTED: similar to Myosin-XVIIIb [Equus caballus] Length = 2568 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIK-SFENQILAISNKLEK--GQKPKYLHL 80 + +R +FE EI K MH ++D E L +I+ S + ++ + +LE+ +K LH Sbjct: 1715 EQLRQRFELEIERMKQMHQKDREDQEEELEDIRQSCQKRLRQLEMQLEQEYEEKQMVLHE 1774 Query: 81 KEAIQKIVKTI 91 K+ ++ ++ T+ Sbjct: 1775 KQDLEGLIGTL 1785 >gi|225438119|ref|XP_002273034.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1308 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Query: 23 EDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKE 82 ED I+ Q E + + ++ +Y L EI FE +I +NKL+K Q P+ L LKE Sbjct: 259 EDVIQEQESCE----REASKAKKEQAKY-LKEITQFEKKISDKNNKLDKNQ-PELLKLKE 312 Query: 83 AIQKIVKTIEQNEKE 97 + +I I+ + KE Sbjct: 313 EMSRINSKIKSSRKE 327 >gi|49475128|ref|YP_033169.1| anti-repressor protein [Bartonella henselae str. Houston-1] gi|49237933|emb|CAF27136.1| Anti-repressor protein [Bartonella henselae str. Houston-1] Length = 184 Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 11 LTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN-QILAISNKL 69 +TL+ + ++ +++ E+ + + D I+ + E K EN + +S L Sbjct: 1 MTLIKISEQAIGQEIVQTVNARELHAFLEIKARFNDWIKNRIKECKFLENINFITLSKNL 60 Query: 70 EKGQKPKYLHLKEAIQKIVKTIEQNEK 96 E G K K H+ + K + IE+N+K Sbjct: 61 ENGGKVKEYHITLDMAKHLSMIERNDK 87 >gi|147808025|emb|CAN64287.1| hypothetical protein VITISV_015634 [Vitis vinifera] Length = 451 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 52 LSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97 L EI FE +I +NKL+K Q P+ L LKE + +I I+ + KE Sbjct: 69 LKEITQFEKKISDKNNKLDKNQ-PELLKLKEEMSRINSKIKSSRKE 113 >gi|126653214|ref|ZP_01725335.1| lipoprotein, putative [Bacillus sp. B14905] gi|126590045|gb|EAZ84172.1| lipoprotein, putative [Bacillus sp. B14905] Length = 956 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Query: 46 DDIEYNLSEIKSFENQILAISNKLE------KGQKPKYLHLKEAIQKIVKTIEQNEK 96 +D +YN+S+IKSFE +I A+ +K + KG Y LK A+ + + NEK Sbjct: 244 NDNKYNVSDIKSFEEKIKALESKYQALSEPAKGNVSNYAVLKRALADVDLINKLNEK 300 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.312 0.129 0.343 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,514,775,750 Number of Sequences: 13984884 Number of extensions: 50097262 Number of successful extensions: 168321 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 91 Number of HSP's that attempted gapping in prelim test: 168282 Number of HSP's gapped (non-prelim): 127 length of query: 97 length of database: 4,792,584,752 effective HSP length: 66 effective length of query: 31 effective length of database: 3,869,582,408 effective search space: 119957054648 effective search space used: 119957054648 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 75 (33.5 bits)