BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
(97 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039897|gb|ACT56693.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN
Sbjct: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE
Sbjct: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
>gi|327259028|ref|XP_003214340.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Anolis
carolinensis]
Length = 451
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62
D S+F+N YKSM PS + DIE L ++K + +I
Sbjct: 184 DEFSSRFKNLAHQYKSMFPSLEIDIEGQLKKLKGYAEKI 222
>gi|326921112|ref|XP_003206808.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Meleagris
gallopavo]
Length = 416
Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62
D S+F+N + YKSM P+ + DIE L ++K + +I
Sbjct: 149 DEFSSRFKNLAQQYKSMFPTLEIDIEGQLKKLKGYAEKI 187
>gi|302407784|ref|XP_003001727.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261359448|gb|EEY21876.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 494
Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 36 YYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQ 93
Y+++M +TQ I N+ KS + +L + ++L K K K L ++K K +E+
Sbjct: 97 YFENMRSNTQALINTNIETEKSIKGSVLPVLDRLHKEIKAKSKELTSGVEKTAKEVEK 154
>gi|127514650|ref|YP_001095847.1| hypothetical protein Shew_3722 [Shewanella loihica PV-4]
gi|126639945|gb|ABO25588.1| protein of unknown function DUF885 [Shewanella loihica PV-4]
Length = 594
Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 27 RSQFENEIRYYKSMHPSTQDDI-EYNLSEIKSFENQILAISNKL-EKGQKPKYLH-LKEA 83
++ +EN +RYY ++ P T D++ + L E+K ++ AI +KL +G +LH L+
Sbjct: 274 KAFYENRVRYYTTL-PMTADEVHQLGLKEVKRIRAEMQAIIDKLGYQGSFADFLHFLRTD 332
Query: 84 IQKIVKTIEQNEKE 97
Q KT EQ KE
Sbjct: 333 PQFYAKTPEQLLKE 346
>gi|292657149|ref|YP_003537045.1| hypothetical protein HVO_C0028 [Haloferax volcanii DS2]
gi|291373040|gb|ADE05266.1| hypothetical protein HVO_C0028 [Haloferax volcanii DS2]
Length = 324
Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 12 TLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKL 69
TLL+ + Y+ R N I YY P+ +DD E++++ +K L +SN+
Sbjct: 221 TLLNHLGSFYYKGVWRP-ISNRIGYYTIHGPAEEDDREFHITNLKRARQNFLKLSNQF 277
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780220|ref|YP_003064633.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039897|gb|ACT56693.1| hypothetical protein CLIBASIA_00525 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN
Sbjct: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE
Sbjct: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
>gi|127514650|ref|YP_001095847.1| hypothetical protein Shew_3722 [Shewanella loihica PV-4]
gi|126639945|gb|ABO25588.1| protein of unknown function DUF885 [Shewanella loihica PV-4]
Length = 594
Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 27 RSQFENEIRYYKSMHPSTQDDI-EYNLSEIKSFENQILAISNKL-EKGQKPKYLH-LKEA 83
++ +EN +RYY ++ P T D++ + L E+K ++ AI +KL +G +LH L+
Sbjct: 274 KAFYENRVRYYTTL-PMTADEVHQLGLKEVKRIRAEMQAIIDKLGYQGSFADFLHFLRTD 332
Query: 84 IQKIVKTIEQNEKE 97
Q KT EQ KE
Sbjct: 333 PQFYAKTPEQLLKE 346
>gi|317471177|ref|ZP_07930548.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
gi|316901392|gb|EFV23335.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
Length = 739
Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
MK+ L + +L+L S YVY + S ENE+ S+H + ++ EI S N
Sbjct: 7 MKRILLFIVVLSLGLFSSLYVYSRVLHSNLENEV--ISSLHEVSGQSVKILRKEILSEIN 64
Query: 61 QILAISNKLEKGQKPKYLHLKEAIQKIVK 89
+ ISN++ + + L E+ QK+ +
Sbjct: 65 LLDGISNEISEKRLKDPKKLAESFQKVTE 93
>gi|302407784|ref|XP_003001727.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261359448|gb|EEY21876.1| PH domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 494
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 36 YYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQ 93
Y+++M +TQ I N+ KS + +L + ++L K K K L ++K K +E+
Sbjct: 97 YFENMRSNTQALINTNIETEKSIKGSVLPVLDRLHKEIKAKSKELTSGVEKTAKEVEK 154
>gi|149195582|ref|ZP_01872639.1| hypothetical protein LNTAR_16858 [Lentisphaera araneosa HTCC2155]
gi|149141044|gb|EDM29440.1| hypothetical protein LNTAR_16858 [Lentisphaera araneosa HTCC2155]
Length = 963
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 9 PLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDD---IEYNLSEIKSFENQILAI 65
PLL ++CSDY Y+ A S E RYY + +++ +E++LSEI E ++ +
Sbjct: 692 PLLKTTNTCSDYQYK-AWTSYDEKNQRYYIWSVQNNKNETYNLEFDLSEIDVTEGALVTV 750
Query: 66 S--NKLEKGQKPKYLHL 80
+ + G+ + LHL
Sbjct: 751 ETVSPIRHGEMTQLLHL 767
>gi|327259028|ref|XP_003214340.1| PREDICTED: adenylosuccinate synthetase isozyme 1-like [Anolis
carolinensis]
Length = 451
Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62
D S+F+N YKSM PS + DIE L ++K + +I
Sbjct: 184 DEFSSRFKNLAHQYKSMFPSLEIDIEGQLKKLKGYAEKI 222
>gi|297744153|emb|CBI37123.3| unnamed protein product [Vitis vinifera]
Length = 2295
Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 23 EDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKE 82
ED I+ Q E + + ++ +Y L EI FE +I +NKL+K Q P+ L LKE
Sbjct: 212 EDVIQEQESCE----REASKAKKEQAKY-LKEITQFEKKISDKNNKLDKNQ-PELLKLKE 265
Query: 83 AIQKIVKTIEQNEKE 97
+ +I I+ + KE
Sbjct: 266 EMSRINSKIKSSRKE 280
>gi|194214159|ref|XP_001499981.2| PREDICTED: similar to Myosin-XVIIIb [Equus caballus]
Length = 2568
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIK-SFENQILAISNKLEK--GQKPKYLHL 80
+ +R +FE EI K MH ++D E L +I+ S + ++ + +LE+ +K LH
Sbjct: 1715 EQLRQRFELEIERMKQMHQKDREDQEEELEDIRQSCQKRLRQLEMQLEQEYEEKQMVLHE 1774
Query: 81 KEAIQKIVKTI 91
K+ ++ ++ T+
Sbjct: 1775 KQDLEGLIGTL 1785
>gi|225438119|ref|XP_002273034.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1308
Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 23 EDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKE 82
ED I+ Q E + + ++ +Y L EI FE +I +NKL+K Q P+ L LKE
Sbjct: 259 EDVIQEQESCE----REASKAKKEQAKY-LKEITQFEKKISDKNNKLDKNQ-PELLKLKE 312
Query: 83 AIQKIVKTIEQNEKE 97
+ +I I+ + KE
Sbjct: 313 EMSRINSKIKSSRKE 327
>gi|49475128|ref|YP_033169.1| anti-repressor protein [Bartonella henselae str. Houston-1]
gi|49237933|emb|CAF27136.1| Anti-repressor protein [Bartonella henselae str. Houston-1]
Length = 184
Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 11 LTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN-QILAISNKL 69
+TL+ + ++ +++ E+ + + D I+ + E K EN + +S L
Sbjct: 1 MTLIKISEQAIGQEIVQTVNARELHAFLEIKARFNDWIKNRIKECKFLENINFITLSKNL 60
Query: 70 EKGQKPKYLHLKEAIQKIVKTIEQNEK 96
E G K K H+ + K + IE+N+K
Sbjct: 61 ENGGKVKEYHITLDMAKHLSMIERNDK 87
>gi|147808025|emb|CAN64287.1| hypothetical protein VITISV_015634 [Vitis vinifera]
Length = 451
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 52 LSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
L EI FE +I +NKL+K Q P+ L LKE + +I I+ + KE
Sbjct: 69 LKEITQFEKKISDKNNKLDKNQ-PELLKLKEEMSRINSKIKSSRKE 113
>gi|126653214|ref|ZP_01725335.1| lipoprotein, putative [Bacillus sp. B14905]
gi|126590045|gb|EAZ84172.1| lipoprotein, putative [Bacillus sp. B14905]
Length = 956
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 46 DDIEYNLSEIKSFENQILAISNKLE------KGQKPKYLHLKEAIQKIVKTIEQNEK 96
+D +YN+S+IKSFE +I A+ +K + KG Y LK A+ + + NEK
Sbjct: 244 NDNKYNVSDIKSFEEKIKALESKYQALSEPAKGNVSNYAVLKRALADVDLINKLNEK 300
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.312 0.129 0.343
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,514,775,750
Number of Sequences: 13984884
Number of extensions: 50097262
Number of successful extensions: 168321
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 168282
Number of HSP's gapped (non-prelim): 127
length of query: 97
length of database: 4,792,584,752
effective HSP length: 66
effective length of query: 31
effective length of database: 3,869,582,408
effective search space: 119957054648
effective search space used: 119957054648
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)