RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>gnl|CDD|36569 KOG1355, KOG1355, KOG1355, Adenylosuccinate synthase [Nucleotide
           transport and metabolism].
          Length = 455

 Score = 27.7 bits (61), Expect = 0.79
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 24  DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQI 62
           D    +F+     YKS  P+ + DIE  L+  K +  ++
Sbjct: 189 DEFSERFKVLAEQYKSRFPTLEIDIEGELARYKGYAEKL 227


>gnl|CDD|147635 pfam05565, Sipho_Gp157, Siphovirus Gp157.  This family contains
          both viral and bacterial proteins which are related to
          the Gp157 protein of the Streptococcus thermophilus SFi
          bacteriophages. It is thought that bacteria possessing
          the gene coding for this protein have an increased
          resistance to the bacteriophage.
          Length = 162

 Score = 27.2 bits (61), Expect = 0.93
 Identities = 15/67 (22%), Positives = 34/67 (50%)

Query: 24 DAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEA 83
          ++I  +FE+++     +  + + DIE   +EIK    +  +I NK+++ +      ++  
Sbjct: 32 ESIEEEFEDKVENIAKVIKNLEADIEAIKAEIKRLAERKKSIENKVKRLKDYLEEAMEAT 91

Query: 84 IQKIVKT 90
            K +KT
Sbjct: 92 GIKKIKT 98


>gnl|CDD|48079 cd01979, Pchlide_reductase_N, Pchlide_reductase_N: N protein of the
           NB protein complex of Protochlorophyllide
           (Pchlide)_reductase. Pchlide reductase catalyzes the
           reductive formation of chlorophyllide (chlide) from
           protochlorophyllide (pchlide) during biosynthesis of
           chlorophylls and bacteriochlorophylls. This group
           contains both the light-independent Pchlide reductase
           (DPOR) and light-dependent Pchlide reductase (LPOR).
           Angiosperms contain only LPOR, cyanobacteria, algae and
           gymnosperms contain both DPOR and LPOR, primitive
           anoxygenic photosynthetic bacteria contain only DPOR. NB
           is structurally similar to the FeMo protein of
           nitrogenase, forming an N2B2 heterotetramer. N and B are
           homologous to the FeMo alpha and beta subunits
           respectively. Also in common with nitrogenase in vitro
           DPOR activity requires ATP hydrolysis and dithoionite or
           ferredoxin as electron donor. The NB protein complex may
           serve as a catalytic site for Pchlide reduction similar
           to MoFe for nitrogen reduction..
          Length = 396

 Score = 26.0 bits (57), Expect = 2.6
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 9/79 (11%)

Query: 1   MKKTQLLLPLLTLLSSCSDYVYEDAI----RSQFENEIRYYKSMHPST-QDDIEYNLSEI 55
           M    L +PL   L+ C   V E       +     E+     M     + D    L  I
Sbjct: 282 MGDNLLEIPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIVEKPDNYRQLDRI 341

Query: 56  KSFENQI----LAISNKLE 70
           +     +    L ++N LE
Sbjct: 342 RELRPDLVVTGLGLANPLE 360


>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
           protein 1 (sister chromatid cohesion complex Cohesin,
           subunit SMC1) [Cell cycle control, cell division,
           chromosome partitioning].
          Length = 1141

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 1   MKKTQLLLPLLTLLSSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFEN 60
            KK +LL  L  +     +    ++     E  ++Y K      +  +E N  E++  E+
Sbjct: 659 EKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTES 718

Query: 61  QILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
           +I            P+   +K  +Q     +++ E+ 
Sbjct: 719 EIDEF--------GPEISEIKRKLQNREGEMKELEER 747


>gnl|CDD|38442 KOG3232, KOG3232, KOG3232, Vacuolar assembly/sorting protein DID2
          [Intracellular trafficking, secretion, and vesicular
          transport].
          Length = 203

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 46 DDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQK 86
          D +E +L ++K    Q+   + K EK +K +   LK+AIQK
Sbjct: 5  DKLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQK 45


>gnl|CDD|39264 KOG4061, KOG4061, KOG4061, DMQ mono-oxygenase/Ubiquinone
           biosynthesis protein COQ7/CLK-1/CAT5 [General function
           prediction only].
          Length = 217

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 16  SCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKP 75
           +C++ V E  I   + +++R      P    ++   +++ +  E +      + +  + P
Sbjct: 136 ACTEAV-ETVIGGHYNDQLRELAEDDPEEHKELLSTITKFRDEELEHHDTGVEHDAEKAP 194

Query: 76  KYLHLKEAIQKIVKT 90
            Y  L E IQ   K 
Sbjct: 195 AYAALTEIIQTGCKV 209


>gnl|CDD|36021 KOG0803, KOG0803, KOG0803, Predicted E3 ubiquitin ligase
            [Posttranslational modification, protein turnover,
            chaperones].
          Length = 1312

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 15   SSCSDYVYEDAIRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKG 72
            S      Y D   S F N + Y   +      D+      I     Q      KL++G
Sbjct: 1153 SYELLKAYCDVWDSFFSNAVNYLMLLQEFEVRDV------IIGCRIQERKQERKLKEG 1204


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.312    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0755    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,074,085
Number of extensions: 47224
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 27
Length of query: 97
Length of database: 6,263,737
Length adjustment: 65
Effective length of query: 32
Effective length of database: 4,859,152
Effective search space: 155492864
Effective search space used: 155492864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)