RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>gnl|CDD|182706 PRK10760, PRK10760, murein hydrolase B; Provisional.
          Length = 359

 Score = 29.3 bits (66), Expect = 0.25
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 1  MKKTQLLLPLLTLLSSCS 18
          M++   LLPL  LL++CS
Sbjct: 3  MRRYVALLPLFVLLAACS 20


>gnl|CDD|177284 PHA00452, PHA00452, T3/T7-like RNA polymerase.
          Length = 807

 Score = 27.3 bits (61), Expect = 0.79
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 2   KKTQLLLPLLTLLSSCSDYVYEDAIRSQFENE 33
           K+  + LP  +   SC DY+ ED ++   +  
Sbjct: 576 KRPVMTLPYGSTRFSCRDYILEDLLQPGIDEG 607


>gnl|CDD|182526 PRK10533, PRK10533, putative lipoprotein; Provisional.
          Length = 171

 Score = 25.8 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 1  MKKTQL--LLPLLTLLSSCS--DYVYED 24
          M+ ++L  L+P   LLS+C+     Y+D
Sbjct: 1  MRYSKLALLIPCALLLSACTTVTPAYKD 28


>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
           primarily archaeal type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. It is found
           in a single copy and is homodimeric in prokaryotes, but
           six paralogs (excluded from this family) are found in
           eukarotes, where SMC proteins are heterodimeric. This
           family represents the SMC protein of archaea and a few
           bacteria (Aquifex, Synechocystis, etc); the SMC of other
           bacteria is described by TIGR02168. The N- and
           C-terminal domains of this protein are well conserved,
           but the central hinge region is skewed in composition
           and highly divergent.
          Length = 1164

 Score = 25.4 bits (56), Expect = 3.2
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 27  RSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQK 86
            +     I   ++     +++ E    EIK  E ++  ++  L K ++ +   LKE   +
Sbjct: 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ-ELYDLKEEYDR 480

Query: 87  IVKTIEQNEKE 97
           + K + + ++E
Sbjct: 481 VEKELSKLQRE 491


>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional.
          Length = 372

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 13/51 (25%)

Query: 52  LSEIKSFENQILAISNKLEKGQK-------------PKYLHLKEAIQKIVK 89
           L+EI   EN    I NKL+  +K             P+  HL+E  +++  
Sbjct: 229 LTEIGEEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTV 279


>gnl|CDD|165505 PHA03246, PHA03246, large tegument protein UL36; Provisional.
          Length = 3095

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 26   IRSQFENEIRYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEK 71
            I    E   R +       +  +EY +S +    N I++I++ L+K
Sbjct: 1584 ISDALETLARTHSP--EGARRALEYGVSIVIPSANTIMSIADALQK 1627


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.312    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,472,807
Number of extensions: 79825
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 38
Length of query: 97
Length of database: 5,994,473
Length adjustment: 65
Effective length of query: 32
Effective length of database: 4,589,953
Effective search space: 146878496
Effective search space used: 146878496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.1 bits)