RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780220|ref|YP_003064633.1| hypothetical protein
CLIBASIA_00525 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics,
           unknown function, PSI-2, protein structure initiative;
           1.44A {Methylobacillus flagellatus KT} (A:)
          Length = 286

 Score = 29.1 bits (63), Expect = 0.19
 Identities = 5/39 (12%), Positives = 13/39 (33%)

Query: 59  ENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
            N+ L+ +  L  G +  Y         ++  + +    
Sbjct: 245 GNKKLSNARLLASGYQLIYPDYVSGYGALLAAMREGHHH 283


>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain,
           SUA5 domain, structural genomics, NPPSFA; HET: AMP;
           1.80A {Sulfolobus tokodaii} (A:226-352)
          Length = 127

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 7/55 (12%), Positives = 16/55 (29%)

Query: 35  RYYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVK 89
             + S     + +++  +           AI N+  K      +     + K V 
Sbjct: 72  NLFDSFRELDKLNVDLGIXIGFPERGIGFAIXNRARKASGFSIIKAISDVYKYVN 126


>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease,
          anaerobic parasitic protozoan, structural genomics,
          decode, UW, SBRI; 2.49A {Entamoeba histolytica}
          (A:141-292)
          Length = 152

 Score = 23.6 bits (51), Expect = 9.2
 Identities = 9/46 (19%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 52 LSEIKSFENQILAISNKLEKGQKPKYLHLKEAIQKIVKTIEQNEKE 97
          L +IK  E    +I    +  + P+Y+ + + I+++++ +E+ +  
Sbjct: 43 LLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLE-VEKEQHL 87


>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} (A:)
          Length = 107

 Score = 23.3 bits (50), Expect = 10.0
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 36 YYKSMHPSTQDDIEYNLSEIKSFENQILAISNKLEKGQK 74
          Y++ + P T   ++     I + E Q++    KL+  +K
Sbjct: 25 YFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEK 63


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.312    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 665,290
Number of extensions: 25513
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 14
Length of query: 97
Length of database: 4,956,049
Length adjustment: 57
Effective length of query: 40
Effective length of database: 3,029,164
Effective search space: 121166560
Effective search space used: 121166560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)