RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780221|ref|YP_003064634.1| hypothetical protein
CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>gnl|CDD|162735 TIGR02153, gatD_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
           D.  This peptide is found only in the Archaea. It is
           part of a heterodimer, with GatE (TIGR00134), that acts
           as an amidotransferase on misacylated Glu-tRNA(Gln) to
           produce Gln-tRNA(Gln). The analogous amidotransferase
           found in bacteria is the GatABC system, although GatABC
           homologs in the Archaea appear to act instead on
           Asp-tRNA(Asn).
          Length = 404

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 38  ENLK---IRELQKELYPAIS------TLAHRMDKLHFESDALDPILRRMDGPV 81
           EN+K     ++ + +  A+        +AH  D + + + AL  +   +  PV
Sbjct: 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFETLPVPV 170


>gnl|CDD|151545 pfam11101, DUF2884, Protein of unknown function (DUF2884).  Some
           members in this bacterial family of proteins are
           annotated as YggN which currently has no known function.
          Length = 229

 Score = 25.8 bits (57), Expect = 2.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 68  DALDPILRRMDGPVKHVERRINSKTTTLEQ 97
           + L    +RMDG  + +E  + S++  LE 
Sbjct: 167 NNLTAFEQRMDGLGQQIEEEMESQSQALEA 196


>gnl|CDD|129323 TIGR00219, mreC, rod shape-determining protein MreC.  MreC (murein
           formation C) is involved in the rod shape determination
           in E. coli, and more generally in cell shape
           determination of bacteria whether or not they are
           rod-shaped. Cells defective in MreC are round. Species
           with MreC include many of the Proteobacteria,
           Gram-positives, and spirochetes.
          Length = 283

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 22  DDRITELNTLLAEYKEENLKIREL 45
             +  +L  L    K+EN+++REL
Sbjct: 83  LKKNQQLEILTQNLKQENVRLREL 106


>gnl|CDD|180830 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
           1-phosphotransferase; Provisional.
          Length = 555

 Score = 25.3 bits (56), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 25  ITELNTLLAEYKEE--NLKIRELQKELYPAIS 54
           I ELN+LLAE + E   L     ++ +   +S
Sbjct: 323 IKELNSLLAENESEFKGLDTEAQREYIISKLS 354


>gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional.
          Length = 384

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 49  LYPAISTLAHRMDK-LHFES--DALDPILR 75
           LY AIS L H  D+ ++FE   D+  PI+R
Sbjct: 103 LYAAISALVHPGDEVIYFEPSFDSYAPIVR 132


>gnl|CDD|128870 smart00607, FTP, eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
          
          Length = 151

 Score = 24.8 bits (54), Expect = 4.4
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 4  KTKQLILAVLVTLLGSCADDRITELNTLLAEYKEEN 39
               I +V +T  G C  +RIT    L+    E  
Sbjct: 59 LQYMTIHSVTITNRGDCCGERITGARILIGNSLENG 94


>gnl|CDD|184367 PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.
          Length = 151

 Score = 24.7 bits (54), Expect = 5.7
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)

Query: 1  MRFKTKQLILAVLVTLLGSCA 21
          MR   K ++LA+L   LG CA
Sbjct: 1  MR---KIVLLALLALALGGCA 18


>gnl|CDD|150719 pfam10077, DUF2314, Uncharacterized protein conserved in bacteria
          (DUF2314).  This domain is found in various bacterial
          hypothetical proteins, as well as putative ankyrin
          repeat proteins. The exact function of the domains
          comprising this family has not, as yet, been
          determined.
          Length = 133

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 10/35 (28%), Positives = 12/35 (34%)

Query: 43 RELQKELYPAISTLAHRMDKLHFESDALDPILRRM 77
          REL  E    I  L     K+ F      P +  M
Sbjct: 20 RELSWERRRIIPALDFAAVKVPFTDPDGGPRVEHM 54


>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
           Acetolactate synthase (EC 2.2.1.6) combines two
           molecules of pyruvate to yield 2-acetolactate with the
           release of CO2. This reaction may be involved in either
           valine biosynthesis (biosynthetic) or conversion of
           pyruvate to acetoin and possibly to 2,3-butanediol
           (catabolic). The biosynthetic type, described by
           TIGR00118, is also capable of forming
           acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
           isoleucine biosynthesis. The family described here, part
           of the same larger family of thiamine
           pyrophosphate-dependent enzymes (pfam00205, pfam02776)
           is the catabolic form, generally found associated with
           in species with acetolactate decarboxylase and usually
           found in the same operon. The model may not encompass
           all catabolic acetolactate synthases, but rather one
           particular clade in the larger TPP-dependent enzyme
           family.
          Length = 539

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 22  DDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRMDKLHFESDALDPILRRMDGPV 81
           D  I  ++   A+         EL  ++   +  LA R+       DAL  IL  +    
Sbjct: 286 DATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYELPPDALA-ILEDLKQQR 344

Query: 82  KHVERR 87
           + ++R 
Sbjct: 345 EALDRV 350


>gnl|CDD|116609 pfam07999, RHSP, Retrotransposon hot spot protein.  Members of this
           family are retrotransposon hot spot proteins. They are
           associated with polymorphic subtelomeric regions in
           Trypanosoma.
          Length = 597

 Score = 24.2 bits (52), Expect = 8.3
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 16  LLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRMDKLHFESDALDPILR 75
           +          +LN  L         I +  ++L  A S+L+H +  +     A+ P + 
Sbjct: 484 IFEKFGIAAFVDLNLSLR--------IAKQLRKLKLAGSSLSHIVLGVLAGYLAVGPDVM 535

Query: 76  RMDGPVKH 83
             D P  H
Sbjct: 536 GQDIPTSH 543


>gnl|CDD|162790 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family.  Characterized
           members of this protein family include benzoate-CoA
           ligase, 4-hydroxybenzoate-CoA ligase,
           2-aminobenzoate-CoA ligase, etc. Members are related to
           fatty acid and acetate CoA ligases.
          Length = 508

 Score = 23.6 bits (51), Expect = 9.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 56  LAHRMDKLHFESDALDPILRRMDGPVKHVERRI 88
           L     ++ F S  L P+++   G   H+E R+
Sbjct: 98  LEDSRARVVFVSGELLPVIKAALGKSPHLEHRV 130


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,516,380
Number of extensions: 83934
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 38
Length of query: 97
Length of database: 5,994,473
Length adjustment: 65
Effective length of query: 32
Effective length of database: 4,589,953
Effective search space: 146878496
Effective search space used: 146878496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)