BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780221|ref|YP_003064634.1| hypothetical protein
CLIBASIA_00530 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780221|ref|YP_003064634.1| hypothetical protein CLIBASIA_00530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 97

 Score =  197 bits (501), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MRFKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRM 60
          MRFKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRM
Sbjct: 1  MRFKTKQLILAVLVTLLGSCADDRITELNTLLAEYKEENLKIRELQKELYPAISTLAHRM 60

Query: 61 DKLHFESDALDPILRRMDGPVKHVERRINSKTTTLEQ 97
          DKLHFESDALDPILRRMDGPVKHVERRINSKTTTLEQ
Sbjct: 61 DKLHFESDALDPILRRMDGPVKHVERRINSKTTTLEQ 97


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 23.9 bits (50), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 42  IRELQKELYPAISTLAHRMDKLHFESDALDPILRRMDGPVKHVERRINSKTTTLE 96
           + E QK L  ++   AH  D +H  ++A + ++ R D   K++    NS    LE
Sbjct: 656 LSESQKSLDNSLK--AHATDVVHKITNAENQLVNRFDESSKNIICSYNSSNNKLE 708


>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score = 22.3 bits (46), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 68  DALDPILRRMDGPVKHVERRINSKTTTLE 96
           D +DP  R+      +++ RIN K TTL+
Sbjct: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLK 254


>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 458

 Score = 22.3 bits (46), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 45  LQKELYPAISTLAHRMDKLHFESDALDPILRRM 77
           L +E +   S+L H + K H   DAL  ++R +
Sbjct: 253 LSEEHFVDSSSLRHVIKKKHLVRDALASVIRSI 285


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 170

 Score = 21.9 bits (45), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)

Query: 71 DPILRRMDGPVKHVERRINSKTTTL 95
          DPILRR+  P++    +INS    L
Sbjct: 11 DPILRRVSRPIE----KINSDIMNL 31


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 20.8 bits (42), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 4   KTKQLILAVLVTLLGSCADDRITELNTLLAEYKE 37
           +T+ ++   L  L G   DD   ELN+L  E KE
Sbjct: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486


>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 20.8 bits (42), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 25 ITELNTLLAEYKEENLKIRELQKELYPAIS 54
          +T +  ++ E  EEN+++    K  YP I+
Sbjct: 4  MTYVQYVVVENDEENMRLDRWFKNHYPHIN 33


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,739
Number of Sequences: 1233
Number of extensions: 1700
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 97
length of database: 328,796
effective HSP length: 61
effective length of query: 36
effective length of database: 253,583
effective search space:  9128988
effective search space used:  9128988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)