HHsearch alignment for GI: 254780222 and conserved domain: COG0187
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1707.18 Aligned_cols=629 Identities=48% Similarity=0.778 Sum_probs=595.5
Q ss_pred CCCCCHHHEEECCCCHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 1236975602311210343269815467775-502202443666678777618997699998289839999669843444
Q gi|254780222|r 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 (686)
Q Consensus 41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~-~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~ 119 (686)
T Consensus 3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd 82 (635)
T COG0187 3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD 82 (635)
T ss_pred CCCCCHHHCEECCCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECCHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 57677767333027477645998553368999965046867631307478638685789999479808998789877654
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf 17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 (686)
Q Consensus 120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~ 199 (686)
T Consensus 83 iH~~-~~~s~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G~~~~~l~~ig~~ 161 (635)
T COG0187 83 IHPK-EKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIGST 161 (635)
T ss_pred CCCC-CCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEEEECCEEEEEEEECCCCCCCCEECCCC
T ss_conf 2777-898711788876125766699952760677750416776165469999998987999987189857774012567
Q ss_pred -CCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf -7788539999984243200122228999998888753057735999516453222455411234315861222100246
Q gi|254780222|r 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 (686)
Q Consensus 200 -~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~ 278 (686)
T Consensus 162 ~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~-----~~-~~~ye~Gl~~yv~~l~~ 234 (635)
T COG0187 162 DTKKTGTKVRFKPDPEIFGE-TEFDYEILKRRLRELAFLNKGVKITLTDERTGEE-----KK-EFHYEGGLKDYVEYLNK 234 (635)
T ss_pred CCCCCCCEEEEECCHHHCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC-----CC-EEECCCHHHHHHHHHHC
T ss_conf 77899528999748686277-6667999999999986067997799972467755-----43-24346079999999725
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 776667752033332148015589998541467774-2788830006557524130467899999987630188332223
Q gi|254780222|r 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i 357 (686)
T Consensus 235 ~k~~l~~~~~~~~~~~~---~~~vEvA~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~l 311 (635)
T COG0187 235 GKTPLHEEIFYFNGEKD---GIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGDL 311 (635)
T ss_pred CCCCCCCCCEECCCCCC---CEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 88645657565136766---637999999806884479986458558998608999999999999999998386653577
Q ss_pred CCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32222364269999776345607644662025232000012101588999774013568899999999996545443344
Q gi|254780222|r 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 (686)
Q Consensus 358 ~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k~ 437 (686)
T Consensus 312 ~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~aa~aR~aarkare 391 (635)
T COG0187 312 TGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAAAKAREAARKARE 391 (635)
T ss_pred CHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77787503389999977998857541033426888999999999999999996929999999999999999999898899
Q ss_pred HHH-HHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHH
Q ss_conf 422-1100245653335677656554037997327676421001011222012211231314454108776322889999
Q gi|254780222|r 438 VNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 (686)
Q Consensus 438 ~~r-k~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l 516 (686)
T Consensus 392 ~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~~kil~N~EI~~i 471 (635)
T COG0187 392 LTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQTI 471 (635)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf 88651134557899757565568824155999804776332442168665577204673112322357655433889999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECCHHH
Q ss_conf 98825665433333465525189997798771468899999999870888633938993099699974897999378999
Q gi|254780222|r 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596 (686)
Q Consensus 517 ~~~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~y~~~e~e 596 (686)
T Consensus 472 i~AlG~g~~~~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~~~k~~~Y~~~d~E 551 (635)
T COG0187 472 ITALGTGIGKDFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVKKGKKTFYAYDDEE 551 (635)
T ss_pred HHHHCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCEEEECCHHH
T ss_conf 99958788987785557647279996588772889999999999974999976948997485589975874267279999
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999987741788607868506778898899886039400079999866410267989999998807981689999997
Q gi|254780222|r 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 (686)
Q Consensus 597 ~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi~~ 676 (686)
T Consensus 552 ~~~~~~~~~~~--~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~d----a~~ad~~f~~LMGd~ve~Rr~fIe~ 625 (635)
T COG0187 552 LEKLLERLGKK--KGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIED----ADEADEIFSTLMGDKVEPRRNFIEE 625 (635)
T ss_pred HHHHHHHHCCC--CCCEEEEECCCCCCCHHHHHHHCCCCCCEEEEEEECCC----HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999863426--88405760165778988987753590412589886222----8999999998707785688999998
Q ss_pred HHHHHHHCCC
Q ss_conf 5246775179
Q gi|254780222|r 677 RASFIDDVGT 686 (686)
Q Consensus 677 ~~~~~~~ld~ 686 (686)
T Consensus 626 na~~~~~~di 635 (635)
T COG0187 626 NALFVENLDI 635 (635)
T ss_pred HHHHHHHCCC
T ss_conf 7533332369