HHsearch alignment for GI: 254780222 and conserved domain: COG3850

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=96.94  E-value=0.002  Score=42.79  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=17.8

Q ss_pred             EEEEEEECCCCCCCCHHHC-------CCCCCEEEEEECCEECCHHH
Q ss_conf             0379973276764210010-------11222012211231314454
Q gi|254780222|r  463 GTELFIVEGDSAGGSAKQA-------RNRSNQAVLPLRGKILNVAS  501 (686)
Q Consensus       463 ~~eL~lvEGDSA~gsAk~g-------rdr~~qgi~PLRGKiLNv~~  501 (686)
T Consensus       298 ~~~~di~~~d--~~~~~~~~~~~~l~~~g~~Lg~l~~-~~~l~~~d  340 (574)
T COG3850         298 AEQWDISEGD--QPSGLKWPQEDPLTQQGHLLGTLPW-QRSLPEDD  340 (574)
T ss_pred             CCCCCEECCC--CCCCCCHHHHCCHHHHHHHHEEEEC-CCCCCCCH
T ss_conf             4674342488--8766301343306553046614103-68999813