HHsearch alignment for GI: 254780222 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=96.71 E-value=0.016 Score=36.64 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCEEEEEEC--CCC-EEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
Q ss_conf 2202443666678777618-9976999982--898-399996698434-4417665787012345452002477777741
Q gi|254780222|r 74 LHHLFSEVIDNAMDEVIAG-YANLIEVSLD--GNG-FLTVVDNGRGIP-VENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 (686)
Q Consensus 74 L~~i~~EIldNavDe~~~g-~~~~I~V~i~--~dg-~IsV~ddGrGIP-v~~h~k~~~~~~~Elif~~L~aggnfdd~~y 148 (686)
T Consensus 40 i~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~~~~------~~~P--~~t~-------~~--- 101 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIEDVEE------ARQP--LFTT-------KP--- 101 (146)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCHHH------CCCC--CCCC-------CC---
T ss_conf 9999999999999860367999279999998099999999973789473766------4388--7766-------87---
Q ss_pred EEECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEE
Q ss_conf 5631445388987620321269999418-8389999
Q gi|254780222|r 149 EISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQK 183 (686)
Q Consensus 149 k~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~ 183 (686)
T Consensus 102 --~~~~~GlGl~li~~LmDeVei~s~~g~GTtV~m~ 135 (146)
T PRK03660 102 --ELERSGMGFTFMESFMDEVEVESEPGKGTTIRMK 135 (146)
T ss_pred --CCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE
T ss_conf --6675640589999838869999559997899999