HHsearch alignment for GI: 254780222 and conserved domain: PRK03660

>PRK03660 anti-sigma F factor; Provisional.
Probab=96.71  E-value=0.016  Score=36.64  Aligned_cols=90  Identities=23%  Similarity=0.337  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCCEEEEEEC--CCC-EEEEEECCCCCC-CCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
Q ss_conf             2202443666678777618-9976999982--898-399996698434-4417665787012345452002477777741
Q gi|254780222|r   74 LHHLFSEVIDNAMDEVIAG-YANLIEVSLD--GNG-FLTVVDNGRGIP-VENHPKFPNKSTLEIILTTLHAGGKFDNSTY  148 (686)
Q Consensus        74 L~~i~~EIldNavDe~~~g-~~~~I~V~i~--~dg-~IsV~ddGrGIP-v~~h~k~~~~~~~Elif~~L~aggnfdd~~y  148 (686)
T Consensus        40 i~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid~~~~------~~~P--~~t~-------~~---  101 (146)
T PRK03660         40 IKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIEDVEE------ARQP--LFTT-------KP---  101 (146)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCHHH------CCCC--CCCC-------CC---
T ss_conf             9999999999999860367999279999998099999999973789473766------4388--7766-------87---


Q ss_pred             EEECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEE
Q ss_conf             5631445388987620321269999418-8389999
Q gi|254780222|r  149 EISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQK  183 (686)
Q Consensus       149 k~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~  183 (686)
T Consensus       102 --~~~~~GlGl~li~~LmDeVei~s~~g~GTtV~m~  135 (146)
T PRK03660        102 --ELERSGMGFTFMESFMDEVEVESEPGKGTTIRMK  135 (146)
T ss_pred             --CCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE
T ss_conf             --6675640589999838869999559997899999