HHsearch alignment for GI: 254780222 and conserved domain: PRK04184
>PRK04184 DNA topoisomerase VI subunit B; Validated.
Probab=99.54 E-value=3.5e-12 Score=102.88 Aligned_cols=315 Identities=20% Similarity=0.265 Sum_probs=184.7
Q ss_pred EECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC-C---CEEEEEECCCCCCCCCCCCC
Q ss_conf 2311210343269815467775502202443666678777-61899769999828-9---83999966984344417665
Q gi|254780222|r 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG-N---GFLTVVDNGRGIPVENHPKF 124 (686)
Q Consensus 50 ~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~-d---g~IsV~ddGrGIPv~~h~k~ 124 (686)
T Consensus 12 ~~iS~aEFF~kNk~~lGFd~~~ral~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~~---- 87 (533)
T PRK04184 12 REISVAEFFEKNKHMLGFDSPARALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPEQ---- 87 (533)
T ss_pred HCCCHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHH----
T ss_conf 4179999988575641879853179999999973317668860889865999998378569999944889988678----
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEE-----EEEEECCCEEEEEEEE------CCCEECCC
Q ss_conf 787012345452002477777741563144538898762032126-----9999418838999972------79451131
Q gi|254780222|r 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL-----HVTVARQNTIFSQKFS------RGIPLSPL 193 (686)
Q Consensus 125 ~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f-----~Vev~r~gk~y~q~f~------~g~~~~~~ 193 (686)
T Consensus 88 -----ip~vFGk~L~GSKf~~~--rQsRGqqGiGis~avlysQlTTGkP~~V~S~~~~~~~a~~~~l~iD~~kNep~i~~ 160 (533)
T PRK04184 88 -----IPKVFGKLLYGSKFHRL--RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYEFELKIDTEKNEPEILE 160 (533)
T ss_pred -----HHHHHHHHHCCCCCCHH--HHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEEC
T ss_conf -----88999888502532402--11477535247888777631268865999647998526999999675778734533
Q ss_pred -EECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-------CCCCCCCEEEEEE
Q ss_conf -12167677885399999842432001222289999988887530577359995164532-------2245541123431
Q gi|254780222|r 194 -EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------EKYGIPEKEEFYF 265 (686)
Q Consensus 194 -~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~-------~~~~~~~~~~f~~ 265 (686)
T Consensus 161 ~~~~~~~~~~hGt~Ve~~ieg~~~~--~---r~~v~eYlr~TaIvnPhA~I~f~~Pdg~~~~f~R~t~~lP~~P~eikPH 235 (533)
T PRK04184 161 REERDNWKRWHGTRVELELEGNWYR--A---KQGIYEYLKRTAIVNPHARITLKDPDGEELVFERATDELPKPPKEIKPH 235 (533)
T ss_pred CCEECCCCCCCCEEEEEEEEEEHHH--H---HCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 4120477788843999999764154--4---2369999976510378449999889998799840456689898767899
Q ss_pred CCCCH--HHHHCCCCC----------------------------------------------------------------
Q ss_conf 58612--221002467----------------------------------------------------------------
Q gi|254780222|r 266 PGGLK--TYLQTKLEN---------------------------------------------------------------- 279 (686)
Q Consensus 266 ~~Gi~--dyv~~~~~~---------------------------------------------------------------- 279 (686)
T Consensus 236 P~Gvelg~L~~ml~~t~~~tl~~FL~~eFsrVg~~~A~ei~~~agl~~~~~p~~l~~~e~~~L~~a~~~~k~~~Ppt~cL 315 (533)
T PRK04184 236 PHGVDLGTLKRMAARTDRSTLSEFLVSEFSRVGEKTAKEILEYAGLDPNKKPKELTWEEAERLVEAMKKMKFMAPPTDCL 315 (533)
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86265889999998759977899998543556989999999972899999900189999999999998477889998745
Q ss_pred ------------CCCCCCCCEEEEEEE----CCCEEEEEEEEEEECCC-----CCCEEEEEEECCCC-CCCEEECCHHHH
Q ss_conf ------------766677520333321----48015589998541467-----77427888300065-575241304678
Q gi|254780222|r 280 ------------RSLISSEIFTGKTEK----KGTHRGTVEWAIAWCEE-----NPEITSYCNTILTD-EGGTHESGLRVA 337 (686)
Q Consensus 280 ------------~~~~~~~~~~~~~~~----~~~~~~~veval~~~~~-----~~~~~SFVN~I~T~-~GGTHv~g~~~a 337 (686)
T Consensus 316 SPIGe~~i~~Gl~k~~~peF~-aavTR~p~vy~G~PF~VEvgiAyGG~~~~~~~~~vlRFANRVPLly~~g~------ca 388 (533)
T PRK04184 316 SPIGEELIEKGLKKILQPEFV-AAVTRKPKVYSGHPFIVEVGIAYGGEIPPSGKPELLRFANRVPLLYDEGA------CV 388 (533)
T ss_pred CCCCHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEECCCC------CH
T ss_conf 767889999999864394168-98545884038987799997310577788897159997056871212664------17
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCC-EEEEEEEEEEHHHCCCCCCCCCC-CHHHCC
Q ss_conf 9999998763018833222332222364-26999977634560764466202-523200
Q gi|254780222|r 338 LTRGIKKYAELTQNKRAISIISDDLMIS-AVGILSVFIREPEFAGQTKTKLV-SLDAQR 394 (686)
Q Consensus 338 i~k~i~~~~~~~~~kk~~~i~~~dIk~~-L~~~Isv~I~nP~FesQTKekL~-s~~~~~ 394 (686)
T Consensus 389 itkav~~i-nWr--~Ygl~q~----p~gP~~v~VhvaSt~VPftsesKEaIAd~pEI~~ 440 (533)
T PRK04184 389 ITKAVESI-NWK--RYGLSQP----PDAPLVVLVHVASTKVPYTSEGKEAIADVPEIEK 440 (533)
T ss_pred HHHHHHHC-CHH--HCCCCCC----CCCCEEEEEEEEECCCCCCCCCHHHHCCCHHHHH
T ss_conf 88887747-856--5187899----9987899999620688967743554337789999