HHsearch alignment for GI: 254780222 and conserved domain: PRK04184

>PRK04184 DNA topoisomerase VI subunit B; Validated.
Probab=99.54  E-value=3.5e-12  Score=102.88  Aligned_cols=315  Identities=20%  Similarity=0.265  Sum_probs=184.7

Q ss_pred             EECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC-C---CEEEEEECCCCCCCCCCCCC
Q ss_conf             2311210343269815467775502202443666678777-61899769999828-9---83999966984344417665
Q gi|254780222|r   50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG-N---GFLTVVDNGRGIPVENHPKF  124 (686)
Q Consensus        50 ~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~-d---g~IsV~ddGrGIPv~~h~k~  124 (686)
T Consensus        12 ~~iS~aEFF~kNk~~lGFd~~~ral~ttvkE~VdNsLDAcEe~gILPdI~v~I~~~~~~~y~v~VeDNGpGI~~~~----   87 (533)
T PRK04184         12 REISVAEFFEKNKHMLGFDSPARALYTTVKELVDNSLDACEEAGILPDIKVEIRRVGEDYYRVIVEDNGPGIPPEQ----   87 (533)
T ss_pred             HCCCHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHH----
T ss_conf             4179999988575641879853179999999973317668860889865999998378569999944889988678----


Q ss_pred             CCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEE-----EEEEECCCEEEEEEEE------CCCEECCC
Q ss_conf             787012345452002477777741563144538898762032126-----9999418838999972------79451131
Q gi|254780222|r  125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL-----HVTVARQNTIFSQKFS------RGIPLSPL  193 (686)
Q Consensus       125 ~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f-----~Vev~r~gk~y~q~f~------~g~~~~~~  193 (686)
T Consensus        88 -----ip~vFGk~L~GSKf~~~--rQsRGqqGiGis~avlysQlTTGkP~~V~S~~~~~~~a~~~~l~iD~~kNep~i~~  160 (533)
T PRK04184         88 -----IPKVFGKLLYGSKFHRL--RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYEFELKIDTEKNEPEILE  160 (533)
T ss_pred             -----HHHHHHHHHCCCCCCHH--HHCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEEC
T ss_conf             -----88999888502532402--11477535247888777631268865999647998526999999675778734533


Q ss_pred             -EECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-------CCCCCCCEEEEEE
Q ss_conf             -12167677885399999842432001222289999988887530577359995164532-------2245541123431
Q gi|254780222|r  194 -EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-------EKYGIPEKEEFYF  265 (686)
Q Consensus       194 -~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~-------~~~~~~~~~~f~~  265 (686)
T Consensus       161 ~~~~~~~~~~hGt~Ve~~ieg~~~~--~---r~~v~eYlr~TaIvnPhA~I~f~~Pdg~~~~f~R~t~~lP~~P~eikPH  235 (533)
T PRK04184        161 REERDNWKRWHGTRVELELEGNWYR--A---KQGIYEYLKRTAIVNPHARITLKDPDGEELVFERATDELPKPPKEIKPH  235 (533)
T ss_pred             CCEECCCCCCCCEEEEEEEEEEHHH--H---HCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             4120477788843999999764154--4---2369999976510378449999889998799840456689898767899


Q ss_pred             CCCCH--HHHHCCCCC----------------------------------------------------------------
Q ss_conf             58612--221002467----------------------------------------------------------------
Q gi|254780222|r  266 PGGLK--TYLQTKLEN----------------------------------------------------------------  279 (686)
Q Consensus       266 ~~Gi~--dyv~~~~~~----------------------------------------------------------------  279 (686)
T Consensus       236 P~Gvelg~L~~ml~~t~~~tl~~FL~~eFsrVg~~~A~ei~~~agl~~~~~p~~l~~~e~~~L~~a~~~~k~~~Ppt~cL  315 (533)
T PRK04184        236 PHGVDLGTLKRMAARTDRSTLSEFLVSEFSRVGEKTAKEILEYAGLDPNKKPKELTWEEAERLVEAMKKMKFMAPPTDCL  315 (533)
T ss_pred             CCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             86265889999998759977899998543556989999999972899999900189999999999998477889998745


Q ss_pred             ------------CCCCCCCCEEEEEEE----CCCEEEEEEEEEEECCC-----CCCEEEEEEECCCC-CCCEEECCHHHH
Q ss_conf             ------------766677520333321----48015589998541467-----77427888300065-575241304678
Q gi|254780222|r  280 ------------RSLISSEIFTGKTEK----KGTHRGTVEWAIAWCEE-----NPEITSYCNTILTD-EGGTHESGLRVA  337 (686)
Q Consensus       280 ------------~~~~~~~~~~~~~~~----~~~~~~~veval~~~~~-----~~~~~SFVN~I~T~-~GGTHv~g~~~a  337 (686)
T Consensus       316 SPIGe~~i~~Gl~k~~~peF~-aavTR~p~vy~G~PF~VEvgiAyGG~~~~~~~~~vlRFANRVPLly~~g~------ca  388 (533)
T PRK04184        316 SPIGEELIEKGLKKILQPEFV-AAVTRKPKVYSGHPFIVEVGIAYGGEIPPSGKPELLRFANRVPLLYDEGA------CV  388 (533)
T ss_pred             CCCCHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCEEECCCC------CH
T ss_conf             767889999999864394168-98545884038987799997310577788897159997056871212664------17


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCC-EEEEEEEEEEHHHCCCCCCCCCC-CHHHCC
Q ss_conf             9999998763018833222332222364-26999977634560764466202-523200
Q gi|254780222|r  338 LTRGIKKYAELTQNKRAISIISDDLMIS-AVGILSVFIREPEFAGQTKTKLV-SLDAQR  394 (686)
Q Consensus       338 i~k~i~~~~~~~~~kk~~~i~~~dIk~~-L~~~Isv~I~nP~FesQTKekL~-s~~~~~  394 (686)
T Consensus       389 itkav~~i-nWr--~Ygl~q~----p~gP~~v~VhvaSt~VPftsesKEaIAd~pEI~~  440 (533)
T PRK04184        389 ITKAVESI-NWK--RYGLSQP----PDAPLVVLVHVASTKVPYTSEGKEAIADVPEIEK  440 (533)
T ss_pred             HHHHHHHC-CHH--HCCCCCC----CCCCEEEEEEEEECCCCCCCCCHHHHCCCHHHHH
T ss_conf             88887747-856--5187899----9987899999620688967743554337789999