HHsearch alignment for GI: 254780222 and conserved domain: PRK05559
>PRK05559 DNA topoisomerase IV subunit B; Reviewed.
Probab=100.00 E-value=0 Score=1726.42 Aligned_cols=624 Identities=50% Similarity=0.810 Sum_probs=591.7
Q ss_pred CCCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 63123697560231121034326981546777550220244366667877761899769999828983999966984344
Q gi|254780222|r 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 (686)
Q Consensus 39 ~~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv 118 (686)
T Consensus 3 ~~~~~Y~~~~i~~L~glE~Vr~RP~mYIGst~~~Gl~hi~~EIldNavDe~~~g~~~~I~V~i~~dgsIsV~dnGrGIPv 82 (633)
T PRK05559 3 MMTNNYNADSIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKKIEVTLHADGSVSVRDNGRGIPV 82 (633)
T ss_pred CCCCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCEEEEEEEEECHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCC
T ss_conf 20057797778660574676449986656899985628887765511427650789769999978984999989965455
Q ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCC
Q ss_conf 41766578701234545200247777774156314453889876203212699994188389999727945113112167
Q gi|254780222|r 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198 (686)
Q Consensus 119 ~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~ 198 (686)
T Consensus 83 ~~h~~-~~~~~~ElIft~LhaGgkfd~~~ykvSGGlhGvGasvvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~ 161 (633)
T PRK05559 83 GIHPE-EGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSERLEVEVKRDGKVYRQRFERGEPVTPLEVVGG 161 (633)
T ss_pred CCCCC-CCCCCHHHHEEECCCCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEECCCEECCCCCEECC
T ss_conf 17565-79761566100204578889985155078776212670873055899999899999999549909888513045
Q ss_pred CCC--CCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCC
Q ss_conf 677--885399999842432001222289999988887530577359995164532224554112343158612221002
Q gi|254780222|r 199 VRN--KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 (686)
Q Consensus 199 ~~~--k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~ 276 (686)
T Consensus 162 ~~~~~~~GT~ItF~PD~~iF~~-~~~~~d~l~~rl~~~A~l~~gl~I~lnder~~--------~~~F~~e~Gi~dyv~~~ 232 (633)
T PRK05559 162 TKGKRKTGTRVRFWPDPKIFDS-AKFSPERLKERLRSKAFLCPGLEITLNDERTG--------EETFHYENGLKDYLAEL 232 (633)
T ss_pred CCCCCCCCEEEEEEECHHHHCC-CEECHHHHHHHHHHHHHCCCCCEEEEEECCCC--------CEEEECCCCHHHHHHHH
T ss_conf 6787888349999988578377-25428999999999863279977999824677--------34466476199999986
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCC-CEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 4677666775203333214801558999854146777-4278883000655752413046789999998763018-8332
Q gi|254780222|r 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRA 354 (686)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~-~kk~ 354 (686)
T Consensus 233 ~~~~~~i~~~~~~~~------~~~~veval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~k~i~~y~~k~~~~Kkk 306 (633)
T PRK05559 233 NEGKELLPVEPFEGD------EGEAVEWALAWLEGGSENIESYVNLIPTPDGGTHENGFREGLLRALREFAEKRNLLKRG 306 (633)
T ss_pred HCCCCCCCCCEEECC------CCCEEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 179975786428755------79759999994478884476568870579998767889989999999999982745566
Q ss_pred CCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22332222364269999776345607644662025232000012101588999774013568899999999996545443
Q gi|254780222|r 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 (686)
Q Consensus 355 ~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k 434 (686)
T Consensus 307 ~~i~~~dIregL~~~Vsv~i~nP~FesQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~~~~a~~r~~a~k 386 (633)
T PRK05559 307 VKLTAEDVREGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIKAAQARLRARK 386 (633)
T ss_pred CCCCHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65788898465326866310498406733200259657767778888999999997989999999999999999999972
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHH
Q ss_conf 34442211002456533356776565540379973276764210010112220122112313144541087763228899
Q gi|254780222|r 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 (686)
Q Consensus 435 ~k~~~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~ 514 (686)
T Consensus 387 ~~~~~rk~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSAgGsak~gRDr~~qailPLRGKiLNv~~a~~~ki~~N~Ei~ 466 (633)
T PRK05559 387 KKEVRRKKATKKPALPGKLADCTSQDPERTELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEASLDDVLANEEIH 466 (633)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCEECCHHHCCHHHHHHCHHHH
T ss_conf 13201345334678986661302389674469998346777633522154626530026622235317888876268999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC-EEEEECC
Q ss_conf 999882566543333346552518999779877146889999999987088863393899309969997489-7999378
Q gi|254780222|r 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHD 593 (686)
Q Consensus 515 ~l~~~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~-~~~y~~~ 593 (686)
T Consensus 467 ~l~~alG~~~g~~~d~~~LRYgkIiImTDaD~DGsHI~~Llltff~~~~p~Li~~G~vy~~~tPl~kv~~gk~~~~y~~~ 546 (633)
T PRK05559 467 DIIVAIGIGPGDSFDLEDLRYGKIIIMTDADVDGAHIATLLLTFFYRHFPPLVEAGHVYIALPPLYRVDVGKGKTFYALD 546 (633)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEECC
T ss_conf 99998577878768701067671799977999768899999999998769988659589973988999938943698588
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999987741-78860786850677889889988603940007999986641026798999999880798168999
Q gi|254780222|r 594 EEHKQKILEEFKKH-GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 (686)
Q Consensus 594 e~e~~~~~~~~~~~-~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~ 672 (686)
T Consensus 547 e~e~~~~~~~~~~~~~~~k~~i~ryKGLGem~~~ql~et~mdp~~r~l~~v~~~d----~~~~~~~~~~lmg~~~~~Rk~ 622 (633)
T PRK05559 547 EEEKEELLKKLGKGGKKGKVEIQRFKGLGEMNPDQLWETTMDPETRRLLRVTIDD----AAETEELVDMLMGKKAEPRRN 622 (633)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCC----HHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999998641157787036876406779989999872582214699986486----889999999982899579999
Q ss_pred HHHHHHHHHH
Q ss_conf 9997524677
Q gi|254780222|r 673 FIQERASFID 682 (686)
Q Consensus 673 wi~~~~~~~~ 682 (686)
T Consensus 623 ~i~~~a~~~~ 632 (633)
T PRK05559 623 WIEENGDELD 632 (633)
T ss_pred HHHHHHHHCC
T ss_conf 9996034146