HHsearch alignment for GI: 254780222 and conserved domain: PRK10755

>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=97.25  E-value=0.00055  Score=46.64  Aligned_cols=78  Identities=22%  Similarity=0.346  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
Q ss_conf             0220244366667877761--89976999982898--3999966984344417665787012345452002477777741
Q gi|254780222|r   73 ALHHLFSEVIDNAMDEVIA--GYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY  148 (686)
Q Consensus        73 GL~~i~~EIldNavDe~~~--g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~y  148 (686)
T Consensus       249 ~D~~lL~~vl~NLi~NAikys~~g~~I~I~l~~~~~~~i~V~D~G~GI~~e~~---------~~iFerFyR~d----~--  313 (355)
T PRK10755        249 GDATLLRLLLRNLVENAHRYSPEGSNITIKLQEDGGAVMAVEDEGPGIDESKC---------GELSKAFVRMD----S--  313 (355)
T ss_pred             ECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCHHHH---------HHHCCCCCCCC----C--
T ss_conf             68999999999999989974899976999999779889999987999897999---------88558861389----9--


Q ss_pred             EEECCCCCHHHHHHHHEEE
Q ss_conf             5631445388987620321
Q gi|254780222|r  149 EISGGLHGVGISVVNALSD  167 (686)
Q Consensus       149 k~sgGlnGvGaklvNalS~  167 (686)
T Consensus       314 -~~gG-sGLGLaIvk~Iv~  330 (355)
T PRK10755        314 -RYGG-IGLGLSIVSRITQ  330 (355)
T ss_pred             -CCCC-CCHHHHHHHHHHH
T ss_conf             -9998-7589999999999