HHsearch alignment for GI: 254780222 and conserved domain: PRK10755
>PRK10755 sensor protein BasS/PmrB; Provisional.
Probab=97.25 E-value=0.00055 Score=46.64 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
Q ss_conf 0220244366667877761--89976999982898--3999966984344417665787012345452002477777741
Q gi|254780222|r 73 ALHHLFSEVIDNAMDEVIA--GYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 (686)
Q Consensus 73 GL~~i~~EIldNavDe~~~--g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~y 148 (686)
T Consensus 249 ~D~~lL~~vl~NLi~NAikys~~g~~I~I~l~~~~~~~i~V~D~G~GI~~e~~---------~~iFerFyR~d----~-- 313 (355)
T PRK10755 249 GDATLLRLLLRNLVENAHRYSPEGSNITIKLQEDGGAVMAVEDEGPGIDESKC---------GELSKAFVRMD----S-- 313 (355)
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCCCCHHHH---------HHHCCCCCCCC----C--
T ss_conf 68999999999999989974899976999999779889999987999897999---------88558861389----9--
Q ss_pred EEECCCCCHHHHHHHHEEE
Q ss_conf 5631445388987620321
Q gi|254780222|r 149 EISGGLHGVGISVVNALSD 167 (686)
Q Consensus 149 k~sgGlnGvGaklvNalS~ 167 (686)
T Consensus 314 -~~gG-sGLGLaIvk~Iv~ 330 (355)
T PRK10755 314 -RYGG-IGLGLSIVSRITQ 330 (355)
T ss_pred -CCCC-CCHHHHHHHHHHH
T ss_conf -9998-7589999999999