HHsearch alignment for GI: 254780222 and conserved domain: TIGR00585
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=98.36 E-value=5.1e-06 Score=60.64 Aligned_cols=189 Identities=20% Similarity=0.300 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEE
Q ss_conf 5022024436666787776189976999982898--39999669843444176657870123454520024777777415
Q gi|254780222|r 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 (686)
Q Consensus 72 ~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk 149 (686)
T Consensus 21 ~~p~~vVKELvENSLD---AG-At~I~v~~~~gG~~~I~V~DNG~Gi~~~------d~----~~~~~~haTSKI~~~~DL 86 (367)
T TIGR00585 21 ERPASVVKELVENSLD---AG-ATKIEVEIEEGGLKLIEVSDNGSGIDKE------DL----ELACERHATSKIQSFEDL 86 (367)
T ss_pred HHHHHHHHHHHHHHHC---CC-CCEEEEEEEECCEEEEEEEECCCCCCHH------HH----HHHHCCCCCCCCCCHHHH
T ss_conf 3279999998873121---48-8589999962653589999778567777------79----986123577632247899
Q ss_pred ---EECCCCCHHHHHHHHEEEEEEEEE------------ECCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEE-----
Q ss_conf ---631445388987620321269999------------418838999972794511311216767788539999-----
Q gi|254780222|r 150 ---ISGGLHGVGISVVNALSDELHVTV------------ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF----- 209 (686)
Q Consensus 150 ---~sgGlnGvGaklvNalS~~f~Vev------------~r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF----- 209 (686)
T Consensus 87 ~~i~TlGFRGEAL~Si~~vs-~~~i~t~~~~~~~W~yQ~~~~~~~~~~~~~~G~~~~--~~~~p~~~~~GT~V~V~~LF~ 163 (367)
T TIGR00585 87 ERIRTLGFRGEALASISSVS-RLTITTKTSGPTAWFYQGAADGLALQVLYAEGKNII--EEIKPAPRPVGTTVEVRDLFY 163 (367)
T ss_pred HHHHCCCCHHHHHHHHHHHH-CCEEEEEECCCCCCEECCCCCCEEEEEEECCCCEEE--ECCCCCCCCCCCEEEEECCCC
T ss_conf 98640483468999998643-334787425898612212356404676620687342--002566889897899730315
Q ss_pred -EECHHH-E-ECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEE--CCCCHHH-HHCCCCC
Q ss_conf -984243-2-0012222899999888875305773599951645322245541123431--5861222-1002467
Q gi|254780222|r 210 -RPDPKI-F-GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF--PGGLKTY-LQTKLEN 279 (686)
Q Consensus 210 -~PD~~i-F-g~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~--~~Gi~dy-v~~~~~~ 279 (686)
T Consensus 164 N~P~R~k~~s~k~~~~e~~~~~~~l~~~~l~~~~v~f~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~v~g~ 237 (367)
T TIGR00585 164 NLPVRRKEFSLKSPKKELRKILDLLERYALIHPDVSFSLTSDESF--QTNGKKVLSLSTKPNQSLKERRIRSVFGT 237 (367)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCEEEEEECCEE--CCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 852026877557806889999999864401337935899971166--47741003352488730789999988744