HHsearch alignment for GI: 254780222 and conserved domain: pfam00204
>pfam00204 DNA_gyraseB DNA gyrase B. This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to PF01119.
Probab=100.00 E-value=5.4e-43 Score=314.36 Aligned_cols=171 Identities=35% Similarity=0.536 Sum_probs=159.0
Q ss_pred CCHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHH
Q ss_conf 61222100246776667752033332148015589998541467774-27888300065575241304678999999876
Q gi|254780222|r 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346 (686)
Q Consensus 268 Gi~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~ 346 (686)
T Consensus 1 Gi~~fv~~l~~~k~~l~~~~~~~~~~~~~~~~~~VevA~q~~~~~~e~~~sfvN~I~T~~GGTH~~gf~~altr~i~~~~ 80 (173)
T pfam00204 1 GLKDYVKELNKDKTPLHPEVIYFEGEEAFDDRIEVEVALQWNDSYSENIVSFVNNIPTPDGGTHVDGFRAALTRALNEYA 80 (173)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98999999856999788988489856527899389999995288875388768886999999789999999999999999
Q ss_pred HHCC-CCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3018-833222332222364269999776345607644662025232000012101588999774013568899999999
Q gi|254780222|r 347 ELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 (686)
Q Consensus 347 ~~~~-~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~ 425 (686)
T Consensus 81 ~k~~~~k~~~~i~~~diregl~~visvki~~P~FegQTK~kL~~~ev~~~v~~~v~~~l~~~l~~np~~a~~Ii~k~~~~ 160 (173)
T pfam00204 81 KKKGLLKKKDKITGDDIREGLTAVVSVKIPNPQFEGQTKEKLGNSEVRSAVESVVSEKFAKFLEKNPEIAKKILEKALAA 160 (173)
T ss_pred HHHCCCCCCCCCCHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 98087645676689999706289999950699635730264279889999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9965454433444
Q gi|254780222|r 426 SEERLRRRKQREV 438 (686)
Q Consensus 426 a~~r~~~~k~k~~ 438 (686)
T Consensus 161 ~~aR~aakkare~ 173 (173)
T pfam00204 161 AKARLAARKAREL 173 (173)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999985379