HHsearch results for GI: 254780222 and protein with PDBid: 1h7s_A

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.41  E-value=3.2e-12  Score=101.69  Aligned_cols=182  Identities=22%  Similarity=0.318  Sum_probs=125.1

Q ss_pred             CHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCC
Q ss_conf             975602311210343269815467775502202443666678777618997699998289--839999669843444176
Q gi|254780222|r   45 DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN--GFLTVVDNGRGIPVENHP  122 (686)
Q Consensus        45 ~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d--g~IsV~ddGrGIPv~~h~  122 (686)
                      .+.+|+.|..--.-+.+-|-+|=+     +..++.|+|+||+|   || |++|.|.++..  ++|+|.|||.|||-+   
T Consensus        11 ~~~~I~~L~~~~~~~i~s~~vi~~-----~~svvkELieNSiD---A~-At~I~I~v~~~g~~~I~V~DnG~Gi~~~---   78 (365)
T 1h7s_A           11 PAKAIKPIDRKSVHQICSGQVVLS-----LSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEE---   78 (365)
T ss_dssp             ------------------CEEECC-----HHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEECSCCCCGG---
T ss_pred             CCCCCEECCHHHHHHHCCCCEECC-----HHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH---
T ss_conf             987776199899988289773468-----88999999977872---89-8889999987984389999899875989---


Q ss_pred             CCCCCEEEEEEEEEEECCC--CCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-CCC-EEEEEEEECCCEECCCEECCC
Q ss_conf             6578701234545200247--777774156314453889876203212699994-188-389999727945113112167
Q gi|254780222|r  123 KFPNKSTLEIILTTLHAGG--KFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQN-TIFSQKFSRGIPLSPLEKKEK  198 (686)
Q Consensus       123 k~~~~~~~Elif~~L~agg--nfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~-r~g-k~y~q~f~~g~~~~~~~~i~~  198 (686)
                         .+   ++++..-+|+.  +++|-....|.|.+|.+++...+.|. +++.+. .++ ..|+..+.++.....   .+.
T Consensus        79 ---dl---~~~~~~~~tsk~~~~~d~~~~~t~GfRGeaL~si~~~s~-~~i~S~~~~~~~~~~~~~~~~~~~~~---~~~  148 (365)
T 1h7s_A           79 ---NF---EGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHNGKIIQ---KTP  148 (365)
T ss_dssp             ---GS---GGGGC----------CCTTCSEEESSSSSHHHHHHHHSE-EEEEEECTTCSSCEEEEECTTSCEEE---EEE
T ss_pred             ---HH---HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEECCCCCHHEEEEEECCCCCCC---CCC
T ss_conf             ---98---645420236776623365334557742278888886245-15888438974334999824665322---356


Q ss_pred             CCCCCCEEEEEEE----CH---HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6778853999998----42---43200122228999998888753057735999516
Q gi|254780222|r  199 VRNKRGTRITFRP----DP---KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD  248 (686)
Q Consensus       199 ~~~k~GT~ItF~P----D~---~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~  248 (686)
                      +....||+|+..=    -+   +.|..........+...++..|..+|++.+.+.+.
T Consensus       149 ~~~~~GTtV~v~~lF~n~PvRrk~~~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~  205 (365)
T 1h7s_A          149 YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQ  205 (365)
T ss_dssp             CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             446787589996133577224332135205899999998765522279647999973