HHsearch results for GI: 254780222 and protein with PDBid: 1mu5_A
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.69 E-value=4.2e-14 Score=114.61 Aligned_cols=309 Identities=18% Similarity=0.262 Sum_probs=183.1
Q ss_pred ECCCCHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC--CC----EEEEEECCCCCCCCCCC
Q ss_conf 31121034326981546-7775502202443666678777-61899769999828--98----39999669843444176
Q gi|254780222|r 51 ILEGLEPVRMRPGMYIG-GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG--NG----FLTVVDNGRGIPVENHP 122 (686)
Q Consensus 51 ~L~glE~VrkRP~mYIG-st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~--dg----~IsV~ddGrGIPv~~h~ 122 (686)
.++-.|-..+-..| .| ++..+.|+..+.|+|+||+|.. .+|....|.|+|.. ++ .|+|.|||.|||-+..
T Consensus 10 ~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i- 87 (471)
T 1mu5_A 10 SLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV- 87 (471)
T ss_dssp -CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH-
T ss_pred HCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH-
T ss_conf 45999998863564-2778702169999999999999978855998716999997368886899999962899999999-
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEE-----EEEEEEECC--CEEEEEEEE----CCCEEC
Q ss_conf 657870123454520024777777415631445388987620321-----269999418--838999972----794511
Q gi|254780222|r 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD-----ELHVTVARQ--NTIFSQKFS----RGIPLS 191 (686)
Q Consensus 123 k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~-----~f~Vev~r~--gk~y~q~f~----~g~~~~ 191 (686)
+.+|+.+++|++|... -++|..|+|++.+..+|. .+.|++... ...|..... .|.+..
T Consensus 88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i 156 (471)
T 1mu5_A 88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII 156 (471)
T ss_dssp --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE
T ss_pred --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
T ss_conf --------9986502625676650---36896213489999999973794699999448997379987322135677656
Q ss_pred C-CEECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------CCCCCCEEEE
Q ss_conf 3-1121676778853999998424320012222899999888875305773599951645322-------2455411234
Q gi|254780222|r 192 P-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------KYGIPEKEEF 263 (686)
Q Consensus 192 ~-~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~-------~~~~~~~~~f 263 (686)
. ...+......+||.|++..+..... ....+...++..|..||-+++.|.+...... .......+..
T Consensus 157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~-----~~~~i~eyl~rtAi~nPha~i~~~~p~~e~~~~~r~~~~lP~~p~eik 231 (471)
T 1mu5_A 157 VERGSVENTRGFHGTSVAISIPGDWPK-----AKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVK 231 (471)
T ss_dssp EEEEEEECCTTCCEEEEEEEEECCHHH-----HHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCCCCCCC
T ss_pred CCCEEEECCCCCCCEEEEEEECCHHHH-----HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCC
T ss_conf 787066057666771699850301777-----777899999887640887189998699974896241123789733126
Q ss_pred EECCCC------------------HHHHHCCCC------------------C---------------------CCCCCC-
Q ss_conf 315861------------------222100246------------------7---------------------766677-
Q gi|254780222|r 264 YFPGGL------------------KTYLQTKLE------------------N---------------------RSLISS- 285 (686)
Q Consensus 264 ~~~~Gi------------------~dyv~~~~~------------------~---------------------~~~~~~- 285 (686)
.++.|+ .+|+..... + +....+
T Consensus 232 PHP~gv~l~~l~~ml~~~~~~~~l~~FL~~~Fs~V~~~~a~~i~~~~g~~~~~~p~~l~~~e~~~l~~a~~~~~~~~~P~ 311 (471)
T 1mu5_A 232 PHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPS 311 (471)
T ss_dssp CCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88002006779999985546662678888754776989999999974999777714499999999999998530467898
Q ss_pred -CCEE--------------------EEEEEC----CCEEEEEEEEEEECCC-----CCCEEEEEEECCCCCCCEEECCHH
Q ss_conf -5203--------------------333214----8015589998541467-----774278883000655752413046
Q gi|254780222|r 286 -EIFT--------------------GKTEKK----GTHRGTVEWAIAWCEE-----NPEITSYCNTILTDEGGTHESGLR 335 (686)
Q Consensus 286 -~~~~--------------------~~~~~~----~~~~~~veval~~~~~-----~~~~~SFVN~I~T~~GGTHv~g~~ 335 (686)
+..+ ...... .-+...||++++|..+ ..++.=|+|-||-.- +.=.
T Consensus 312 t~~LsPige~~i~~gl~~~~~~~f~~~~tR~p~~~~g~pf~vE~~ia~gg~~~~~~~~~v~RfaNrvPLl~-----~~~~ 386 (471)
T 1mu5_A 312 ADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIY-----DEKS 386 (471)
T ss_dssp STTCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECS-----CGGG
T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCC-----CCCC
T ss_conf 64425077899986677505610588733587523799758998542267678889833898436787565-----4554
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCC
Q ss_conf 789999998763018833222332222364269999776345607644662025
Q gi|254780222|r 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 (686)
Q Consensus 336 ~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s 389 (686)
.+|++++... ..+ ..+++-.. .-+.++|++-.++--|.|-.||.+..
T Consensus 387 c~~t~~~~~i-~w~--~Ygl~~~~----~p~~v~vhv~St~vpfts~~Ke~ia~ 433 (471)
T 1mu5_A 387 DVIWKVVEEL-DWK--RYGIESDQ----YQMVVMVHLCSTKIPYKSAGKESIAE 433 (471)
T ss_dssp SHHHHHHHHS-CGG--GGTCCSSC----BCEEEEEEEEESSCCBSSTTCCCBCC
T ss_pred HHHEEHHHHC-CHH--HCCCCCCC----CCEEEEEEECCCCCCCCCCCHHHHCC
T ss_conf 1100012206-715--31879999----97799998455678978752455407