HHsearch results for GI: 254780222 and protein with PDBid: 1pvg_A
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=0 Score=795.79 Aligned_cols=366 Identities=23% Similarity=0.329 Sum_probs=311.9
Q ss_pred CCCCCHHHEEECCCCHHHHCCCCEEECCCCCC-----------------------CHHHHHHHHHHHHHHHHHCCC-CCE
Q ss_conf 12369756023112103432698154677755-----------------------022024436666787776189-976
Q gi|254780222|r 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVIDNAMDEVIAGY-ANL 96 (686)
Q Consensus 41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~-----------------------GL~~i~~EIldNavDe~~~g~-~~~ 96 (686)
+..|.+++||+|+||||||+|||||||||+.. |||||||||||||+||++||+ |++
T Consensus 9 ~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~~ 88 (418)
T 1pvg_A 9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 88 (418)
T ss_dssp ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCCE
T ss_conf 88765651404663108653999712467889832688633554000022434660024656899980247651688877
Q ss_pred EEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-
Q ss_conf 999982-898399996698434441766578701234545200247777774156314453889876203212699994-
Q gi|254780222|r 97 IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA- 174 (686)
Q Consensus 97 I~V~i~-~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~- 174 (686)
|+|+|+ +||+|||+|||||||||+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|||.
T Consensus 89 I~V~i~~~dgsisV~DnGrGIPv~~h~~-~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~ 167 (418)
T 1pvg_A 89 IDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD 167 (418)
T ss_dssp EEEEEETTTTEEEEEEESSCCCCSBCTT-TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE
T ss_conf 9999967998899996990146104366-786411578877403554457753040787552640227663565317676
Q ss_pred -CCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCE---EEEECCC
Q ss_conf -18838999972794511311216767-788539999984243200122228999998888753057735---9995164
Q gi|254780222|r 175 -RQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK---TCWSCDK 249 (686)
Q Consensus 175 -r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~---i~~~~~~ 249 (686)
|+|+.|.|+|++||+..++++++.++ .++||+|+|+||++||++ ..|+.+++..|++++|+|+++++ +.++++
T Consensus 168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~-~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~- 245 (418)
T 1pvg_A 168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK- 245 (418)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE-
T ss_pred CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-
T ss_conf 1498799999946841134420101356899539999838565066-11116899999999998718750899971687-
Q ss_pred CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCC-------CCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEEC
Q ss_conf 53222455411234315861222100246776667-------75203333214801558999854146777427888300
Q gi|254780222|r 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322 (686)
Q Consensus 250 ~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I 322 (686)
....++|++|+..|+..+.....+.. .++.....+. ....||+|++|++..++++||||+|
T Consensus 246 ---------~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~~eva~~~~~~~~~~~SfvN~I 313 (418)
T 1pvg_A 246 ---------SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVAFAVSDISFQQISFVNSI 313 (418)
T ss_dssp ---------ECCCCSHHHHHHTTTTTC-----------------CCSCEEEE---EETTEEEEEEECSSSCEEEEEETTE
T ss_pred ---------CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEE---CCCEEEEEEEECCCCEEEEEEECCC
T ss_conf ---------1466203675464024433330002566666567630687640---3760899998615650588735461
Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHH
Q ss_conf 06557524130467899999987630188332223322223642699997763456076446620252320000121015
Q gi|254780222|r 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 (686)
Q Consensus 323 ~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~ 402 (686)
+|++|||||+||++||+++|++|++ +++..+++++|||++|++||||+|+||+|+||||++|+|+..++++.+.+.+
T Consensus 314 ~T~~GGTHv~g~~~al~~~i~~~~~---k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~ 390 (418)
T 1pvg_A 314 ATTMGGTHVNYITDQIVKKISEILK---KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 390 (418)
T ss_dssp ECTTCBHHHHHHHHHHHHHHHHHHC---C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 4799968079999999999998864---3034678999996092999999848984897202762595110578754629
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889997740135688999999999965
Q gi|254780222|r 403 PFDHYLVQNPIEATKLLEWVIERSEER 429 (686)
Q Consensus 403 ~l~~~l~~n~~~a~~I~~~~~~~a~~r 429 (686)
+|.+.+.+.. |++++++.++++
T Consensus 391 ~~l~ki~k~~-----i~~~i~~~a~~k 412 (418)
T 1pvg_A 391 EYINKIMKTD-----LATRMFEIADAN 412 (418)
T ss_dssp HHHHHHTTSH-----HHHHHHHHHHC-
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 9999988779-----999999999866