HHsearch results for GI: 254780222 and protein with PDBid: 1pvg_A

>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00  E-value=0  Score=795.79  Aligned_cols=366  Identities=23%  Similarity=0.329  Sum_probs=311.9

Q ss_pred             CCCCCHHHEEECCCCHHHHCCCCEEECCCCCC-----------------------CHHHHHHHHHHHHHHHHHCCC-CCE
Q ss_conf             12369756023112103432698154677755-----------------------022024436666787776189-976
Q gi|254780222|r   41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVIDNAMDEVIAGY-ANL   96 (686)
Q Consensus        41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~-----------------------GL~~i~~EIldNavDe~~~g~-~~~   96 (686)
                      +..|.+++||+|+||||||+|||||||||+..                       |||||||||||||+||++||+ |++
T Consensus         9 ~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~~   88 (418)
T 1pvg_A            9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR   88 (418)
T ss_dssp             ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCCE
T ss_conf             88765651404663108653999712467889832688633554000022434660024656899980247651688877


Q ss_pred             EEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-
Q ss_conf             999982-898399996698434441766578701234545200247777774156314453889876203212699994-
Q gi|254780222|r   97 IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-  174 (686)
Q Consensus        97 I~V~i~-~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~-  174 (686)
                      |+|+|+ +||+|||+|||||||||+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|||. 
T Consensus        89 I~V~i~~~dgsisV~DnGrGIPv~~h~~-~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~  167 (418)
T 1pvg_A           89 IDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD  167 (418)
T ss_dssp             EEEEEETTTTEEEEEEESSCCCCSBCTT-TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE
T ss_conf             9999967998899996990146104366-786411578877403554457753040787552640227663565317676


Q ss_pred             -CCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCE---EEEECCC
Q ss_conf             -18838999972794511311216767-788539999984243200122228999998888753057735---9995164
Q gi|254780222|r  175 -RQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK---TCWSCDK  249 (686)
Q Consensus       175 -r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~---i~~~~~~  249 (686)
                       |+|+.|.|+|++||+..++++++.++ .++||+|+|+||++||++ ..|+.+++..|++++|+|+++++   +.++++ 
T Consensus       168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~-~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~-  245 (418)
T 1pvg_A          168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK-  245 (418)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE-
T ss_pred             CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-
T ss_conf             1498799999946841134420101356899539999838565066-11116899999999998718750899971687-


Q ss_pred             CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCC-------CCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEEC
Q ss_conf             53222455411234315861222100246776667-------75203333214801558999854146777427888300
Q gi|254780222|r  250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI  322 (686)
Q Consensus       250 ~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I  322 (686)
                               ....++|++|+..|+..+.....+..       .++.....+.   ....||+|++|++..++++||||+|
T Consensus       246 ---------~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~~eva~~~~~~~~~~~SfvN~I  313 (418)
T 1pvg_A          246 ---------SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVAFAVSDISFQQISFVNSI  313 (418)
T ss_dssp             ---------ECCCCSHHHHHHTTTTTC-----------------CCSCEEEE---EETTEEEEEEECSSSCEEEEEETTE
T ss_pred             ---------CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEE---CCCEEEEEEEECCCCEEEEEEECCC
T ss_conf             ---------1466203675464024433330002566666567630687640---3760899998615650588735461


Q ss_pred             CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHH
Q ss_conf             06557524130467899999987630188332223322223642699997763456076446620252320000121015
Q gi|254780222|r  323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD  402 (686)
Q Consensus       323 ~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~  402 (686)
                      +|++|||||+||++||+++|++|++   +++..+++++|||++|++||||+|+||+|+||||++|+|+..++++.+.+.+
T Consensus       314 ~T~~GGTHv~g~~~al~~~i~~~~~---k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~  390 (418)
T 1pvg_A          314 ATTMGGTHVNYITDQIVKKISEILK---KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL  390 (418)
T ss_dssp             ECTTCBHHHHHHHHHHHHHHHHHHC---C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             4799968079999999999998864---3034678999996092999999848984897202762595110578754629


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889997740135688999999999965
Q gi|254780222|r  403 PFDHYLVQNPIEATKLLEWVIERSEER  429 (686)
Q Consensus       403 ~l~~~l~~n~~~a~~I~~~~~~~a~~r  429 (686)
                      +|.+.+.+..     |++++++.++++
T Consensus       391 ~~l~ki~k~~-----i~~~i~~~a~~k  412 (418)
T 1pvg_A          391 EYINKIMKTD-----LATRMFEIADAN  412 (418)
T ss_dssp             HHHHHHTTSH-----HHHHHHHHHHC-
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             9999988779-----999999999866