HHsearch results for GI: 254780222 and protein with PDBid: 1s16_A
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=0 Score=867.45 Aligned_cols=385 Identities=37% Similarity=0.621 Sum_probs=351.5
Q ss_pred CCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 31236975602311210343269815467775502202443666678777618997699998289839999669843444
Q gi|254780222|r 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 (686)
Q Consensus 40 ~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~ 119 (686)
++++|+|++||+|+||||||+||||||||| ||||||||||||||||+++|||++|+|+|++||+|||+||||||||+
T Consensus 1 m~~~y~~~~i~~L~~lE~Vr~RP~mYiGs~---gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~ 77 (390)
T 1s16_A 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVD 77 (390)
T ss_dssp ---CCSGGGCEECCTTHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCS
T ss_pred CCCCCCHHHCEEECCCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEC
T ss_conf 987638645846145237653896678999---85207869987465067429996799999189869999889950004
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf 17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 (686)
Q Consensus 120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~ 199 (686)
+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..+++.++.+
T Consensus 78 ~h~~-~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~ 156 (390)
T 1s16_A 78 IHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 (390)
T ss_dssp BCTT-TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCC-CCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECC
T ss_conf 5656-687713888987603676788774230675762458989624107999986467689996399745672176145
Q ss_pred C-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf 7-788539999984243200122228999998888753057735999516453222455411234315861222100246
Q gi|254780222|r 200 R-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 (686)
Q Consensus 200 ~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~ 278 (686)
. .++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++. .....|+|++|+.+|+.+++.
T Consensus 157 ~~~~~gT~ItF~PD~~~F~~-~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~-------~~~~~~~~~~Gi~~y~~~~~~ 228 (390)
T 1s16_A 157 GKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVN 228 (390)
T ss_dssp CTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECCSSCHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECHHHHCC-CCCCHHHHHHHHHHHEEECCCCEEEEEECCC-------CEEEEEEECCCHHHHHHHHHC
T ss_conf 77899689999948687044-2326999999998752886895578875168-------706777604867677888725
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCC--CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 7766677520333321480155899985414677--74278883000655752413046789999998763018-83322
Q gi|254780222|r 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI 355 (686)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~--~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~-~kk~~ 355 (686)
.....+..++...... +.+.++|+++|+++. +.++||||+|+|++|||||+||++||+++|++|++.++ ++++.
T Consensus 229 ~~~~~~~~~~~~~~~~---~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk~~ 305 (390)
T 1s16_A 229 GLPTLPEKPFIGNFAG---DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 (390)
T ss_dssp TSCCEEEEEEEEEEEC---SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTC
T ss_pred CCCCCCCCCEEEEECC---CCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8986556635877606---7725999998614344303444434376689947523079999999999999717444567
Q ss_pred CCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23322223642699997763456076446620252320000121015889997740135688999999999965454433
Q gi|254780222|r 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 (686)
Q Consensus 356 ~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~ 435 (686)
+++++||+++|++||+|+|+||+|+||||++|+||+++++|++.++++|..||++||..++.|+++++.+|++|++ ++
T Consensus 306 ~i~~~di~~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~~--~~ 383 (390)
T 1s16_A 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AA 383 (390)
T ss_dssp CCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HC
T ss_pred CCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 4785465377699999984799607711173069768888999999999999997979999999999999999999--76
Q ss_pred HHHHHH
Q ss_conf 444221
Q gi|254780222|r 436 REVNRK 441 (686)
Q Consensus 436 k~~~rk 441 (686)
|++.||
T Consensus 384 k~~~Rk 389 (390)
T 1s16_A 384 KKVVRK 389 (390)
T ss_dssp ------
T ss_pred HHHHCC
T ss_conf 787537