HHsearch results for GI: 254780222 and protein with PDBid: 1s16_A

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=867.45  Aligned_cols=385  Identities=37%  Similarity=0.621  Sum_probs=351.5

Q ss_pred             CCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             31236975602311210343269815467775502202443666678777618997699998289839999669843444
Q gi|254780222|r   40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE  119 (686)
Q Consensus        40 ~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~  119 (686)
                      ++++|+|++||+|+||||||+|||||||||   ||||||||||||||||+++|||++|+|+|++||+|||+||||||||+
T Consensus         1 m~~~y~~~~i~~L~~lE~Vr~RP~mYiGs~---gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~   77 (390)
T 1s16_A            1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVD   77 (390)
T ss_dssp             ---CCSGGGCEECCTTHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCS
T ss_pred             CCCCCCHHHCEEECCCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEC
T ss_conf             987638645846145237653896678999---85207869987465067429996799999189869999889950004


Q ss_pred             CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf             17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r  120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV  199 (686)
Q Consensus       120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~  199 (686)
                      +||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..+++.++.+
T Consensus        78 ~h~~-~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~  156 (390)
T 1s16_A           78 IHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC  156 (390)
T ss_dssp             BCTT-TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCC-CCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECC
T ss_conf             5656-687713888987603676788774230675762458989624107999986467689996399745672176145


Q ss_pred             C-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf             7-788539999984243200122228999998888753057735999516453222455411234315861222100246
Q gi|254780222|r  200 R-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE  278 (686)
Q Consensus       200 ~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~  278 (686)
                      . .++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++.       .....|+|++|+.+|+.+++.
T Consensus       157 ~~~~~gT~ItF~PD~~~F~~-~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~-------~~~~~~~~~~Gi~~y~~~~~~  228 (390)
T 1s16_A          157 GKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVN  228 (390)
T ss_dssp             CTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECCSSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEECHHHHCC-CCCCHHHHHHHHHHHEEECCCCEEEEEECCC-------CEEEEEEECCCHHHHHHHHHC
T ss_conf             77899689999948687044-2326999999998752886895578875168-------706777604867677888725


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCC--CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf             7766677520333321480155899985414677--74278883000655752413046789999998763018-83322
Q gi|254780222|r  279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI  355 (686)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~--~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~-~kk~~  355 (686)
                      .....+..++......   +.+.++|+++|+++.  +.++||||+|+|++|||||+||++||+++|++|++.++ ++++.
T Consensus       229 ~~~~~~~~~~~~~~~~---~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk~~  305 (390)
T 1s16_A          229 GLPTLPEKPFIGNFAG---DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV  305 (390)
T ss_dssp             TSCCEEEEEEEEEEEC---SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTC
T ss_pred             CCCCCCCCCEEEEECC---CCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8986556635877606---7725999998614344303444434376689947523079999999999999717444567


Q ss_pred             CCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23322223642699997763456076446620252320000121015889997740135688999999999965454433
Q gi|254780222|r  356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ  435 (686)
Q Consensus       356 ~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~  435 (686)
                      +++++||+++|++||+|+|+||+|+||||++|+||+++++|++.++++|..||++||..++.|+++++.+|++|++  ++
T Consensus       306 ~i~~~di~~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~~--~~  383 (390)
T 1s16_A          306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AA  383 (390)
T ss_dssp             CCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HC
T ss_pred             CCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf             4785465377699999984799607711173069768888999999999999997979999999999999999999--76


Q ss_pred             HHHHHH
Q ss_conf             444221
Q gi|254780222|r  436 REVNRK  441 (686)
Q Consensus       436 k~~~rk  441 (686)
                      |++.||
T Consensus       384 k~~~Rk  389 (390)
T 1s16_A          384 KKVVRK  389 (390)
T ss_dssp             ------
T ss_pred             HHHHCC
T ss_conf             787537