HHsearch results for GI: 254780222 and protein with PDBid: 2zbk_B
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.00 E-value=4.7e-10 Score=86.79 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf 7775502202443666678777-61899769999828---98---39999669843444176657870123454520024
Q gi|254780222|r 68 GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG---NG---FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 (686)
Q Consensus 68 st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~---dg---~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag 140 (686)
++..++||+.+.|+|+||+|.. ..+++..|.|+|+. ++ +|+|.|||.|||-+- .+.+|+..+++
T Consensus 26 ~~~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~---------l~~~f~~f~~s 96 (530)
T 2zbk_B 26 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE---------VPNAFGRVLYS 96 (530)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGG---------SHHHHTSCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHH---------HHHHHHHHCCC
T ss_conf 854656999999999999988872589883599999834899578999996289899999---------99986420347
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCC--EEEEEEEEC----CCEECC-CEECCCCCCCCCEEEE
Q ss_conf 77777741563144538898762032-----12699994188--389999727----945113-1121676778853999
Q gi|254780222|r 141 GKFDNSTYEISGGLHGVGISVVNALS-----DELHVTVARQN--TIFSQKFSR----GIPLSP-LEKKEKVRNKRGTRIT 208 (686)
Q Consensus 141 gnfdd~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~g--k~y~q~f~~----g~~~~~-~~~i~~~~~k~GT~It 208 (686)
++.....+ .|..|+|.+.+..|| ....|++...+ ..|...+.. +.+... ...+........+.++
T Consensus 97 ~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (530)
T 2zbk_B 97 SKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVA 173 (530)
T ss_dssp CCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEE
T ss_pred CCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEEEE
T ss_conf 76453244---786544589999999980597599999458996489983344356676534578665035677731466
Q ss_pred EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 998424320012222899999888875305773599951
Q gi|254780222|r 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686)
Q Consensus 209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686)
-......+ .....+...++..+..++.+.+.+..
T Consensus 174 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (530)
T 2zbk_B 174 ISIPGDWP-----KAKSRIYEYIKRTYIITPYAEFIFKD 207 (530)
T ss_dssp EEEECCHH-----HHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred EECCCHHH-----HHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 50000555-----55555899999876328886389973