HHsearch results for GI: 254780222 and protein with PDBid: 3h4l_A
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.5e-12 Score=99.60 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCC
Q ss_conf 55022024436666787776189976999982898--39999669843444176657870123454520024--777777
Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG--GKFDNS 146 (686)
Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag--gnfdd~ 146 (686)
...+...+.|+|+||+| || |++|.|.++..| +|.|.|||.||+.+ .+ ++++..-+|| .+|+|-
T Consensus 23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~------d~---~~~~~r~~TSK~~~~~dl 89 (367)
T 3h4l_A 23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPS------NY---EFLALKHYTSKIAKFQDV 89 (367)
T ss_dssp CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGG------GT---TTTTCCEEC---------
T ss_pred ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH------HH---HHHHHHCCCCCCCCCCCC
T ss_conf 46889999999977764---89-5989999987984699999899988978------99---876542058755532233
Q ss_pred CEEEECCCCCHHHHHHHHEEEEEEEEEE-CCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE------ECHHH-EEC
Q ss_conf 4156314453889876203212699994-188389999727945113112167677885399999------84243-200
Q gi|254780222|r 147 TYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR------PDPKI-FGD 218 (686)
Q Consensus 147 ~yk~sgGlnGvGaklvNalS~~f~Vev~-r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~------PD~~i-Fg~ 218 (686)
..--|.|..|.+++...+.|. +++.+. .+...+...|..+-..... ..+....||+|+.. |-..+ |..
T Consensus 90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GTtV~V~dLF~n~PvRrk~~~k 165 (367)
T 3h4l_A 90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSK---TTTSRNKGTTVLVSQLFHNLPVRQKEFSK 165 (367)
T ss_dssp CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEE---EEECCSSEEEEEEESTTTTCHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHC
T ss_conf 112466644078998875256-47998505876334999833752223---54345666634632030587677887650
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 12222899999888875305773599951
Q gi|254780222|r 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686)
Q Consensus 219 ~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686)
...-....+...++..|..+|++.+.+..
T Consensus 166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~ 194 (367)
T 3h4l_A 166 TFKRQFTKCLTVIQGYAIINAAIKFSVWN 194 (367)
T ss_dssp THHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 10267777788986443247970699986