HHsearch results for GI: 254780222 and protein with PDBid: 3na3_A
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.39 E-value=4.5e-11 Score=93.80 Aligned_cols=179 Identities=18% Similarity=0.289 Sum_probs=120.6
Q ss_pred EEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCC
Q ss_conf 023112103432698154677755022024436666787776189976999982898--399996698434441766578
Q gi|254780222|r 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPN 126 (686)
Q Consensus 49 i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~ 126 (686)
|+.|..--.=+.+-|-. ...+..++.|+|+||+| | .|++|.|.++..| .|.|.|||.|||-+ .
T Consensus 9 I~~L~~~~~~~i~s~~v-----i~~~~s~vkELieNsiD---A-~At~I~i~i~~~g~~~I~V~DnG~Gi~~~------d 73 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEV-----IQRPANAIKEMIENCLD---A-KSTSIQVIVKEGGLKLIQIQDNGTGIRKE------D 73 (348)
T ss_dssp CCCCCHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHH---T-TCSEEEEEEEGGGTSEEEEEECSCCCCGG------G
T ss_pred CEECCHHHHHHCCCCCE-----ECCHHHHHHHHHHHHHC---C-CCCEEEEEEECCCEEEEEEEECCCCCCHH------H
T ss_conf 66589899977189776-----55889999999865544---8-99889999998987899999899888989------9
Q ss_pred CEEEEEEEEEEECCCCC---CCCCEEEECCCCCHHHHHHHHEEEEEEEEEEC--CCEEEEEEEECCCEECCCEECCCCCC
Q ss_conf 70123454520024777---77741563144538898762032126999941--88389999727945113112167677
Q gi|254780222|r 127 KSTLEIILTTLHAGGKF---DNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN 201 (686)
Q Consensus 127 ~~~~Elif~~L~aggnf---dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r--~gk~y~q~f~~g~~~~~~~~i~~~~~ 201 (686)
+ .++ +.-|+-||. +|-...-|.|..|.+++....+|. +++.+.. +...|...|.+|........ +..
T Consensus 74 l---~~~-~~~~~tSK~~~~~dl~~~~t~GfRGeAL~sI~~~s~-~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (348)
T 3na3_A 74 L---DIV-CERFTTSKLQSFEDLASISTYGFRGEALASISHVAH-VTITTKTADGKCAYRASYSDGKLKAPPKP---CAG 145 (348)
T ss_dssp G---GTT-TSTTCCSSCCCC---------CCTTCHHHHHHHSSE-EEEEEECTTCSSEEEEEEETTEESSCCEE---ECC
T ss_pred H---HHH-HHCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCC-EEEEEECCCCCCCCEEEEECCCCEEECCC---CCC
T ss_conf 9---999-752457677875542210266632899999985177-49996125676461799806862340442---346
Q ss_pred CCCEEEEE------EECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 88539999------98424320012222899999888875305773599951645
Q gi|254780222|r 202 KRGTRITF------RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 (686)
Q Consensus 202 k~GT~ItF------~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~ 250 (686)
..||+|+. .|=...|-.........+...++..|..+|.+.+.+..+..
T Consensus 146 ~~GTtV~V~nLF~n~PvRrk~lk~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk 200 (348)
T 3na3_A 146 NQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGE 200 (348)
T ss_dssp CSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTC
T ss_pred CCCCEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCE
T ss_conf 7765798700226752555312581899999999999986259996499999999