Query         gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 686
No_of_seqs    238 out of 3153
Neff          6.9 
Searched_HMMs 23785
Date          Tue May 24 01:28:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780222.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1ei1_A DNA gyrase B, GYRB; ATP 100.0       0       0  897.1  28.5  386   41-438     1-390 (391)
  2 1kij_A DNA gyrase subunit B; t 100.0       0       0  876.2  28.4  384   43-438     2-389 (390)
  3 1s16_A Topoisomerase IV subuni 100.0       0       0  867.5  29.6  385   40-441     1-389 (390)
  4 1pvg_A DNA topoisomerase II; G 100.0       0       0  795.8  18.7  366   41-429     9-412 (418)
  5 1zxm_A TOPO IIA ATPase, DNA to 100.0       0       0  792.2  21.0  357   49-430     6-391 (400)
  6 3cwv_A DNA gyrase, B subunit,  100.0       0       0  733.9  24.4  347   51-426     6-362 (369)
  7 3nuh_B DNA gyrase subunit B; t 100.0       0       0  723.5  17.5  250  432-685     1-419 (420)
  8 2xkj_E Topoisomerase IV; type  100.0       0       0  681.5  20.3  255  419-682     1-256 (767)
  9 3k9f_C DNA topoisomerase 4 sub 100.0       0       0  669.8  19.9  238  439-684    23-265 (268)
 10 3m4i_A DNA gyrase subunit B; G 100.0       0       0  639.1  17.2  230  452-685     8-241 (242)
 11 3l4j_A DNA topoisomerase 2; to 100.0       0       0  606.8  18.7  225  445-677     2-237 (757)
 12 2xcs_B DNA gyrase subunit B, D 100.0       0       0  552.2  14.7  196  445-680     2-197 (692)
 13 3fv5_A DNA topoisomerase 4 sub 100.0       0       0  525.3  15.9  200   54-265     1-201 (201)
 14 3g7e_A DNA gyrase subunit B; i 100.0       0       0  516.1  15.9  195   54-250     1-196 (203)
 15 2q2e_B Type 2 DNA topoisomeras 100.0       0       0  590.5 -42.4  573   44-671     8-611 (621)
 16 3g75_A DNA gyrase subunit B; a 100.0       0       0  455.0  12.9  184   54-266     1-184 (184)
 17 1mu5_A Type II DNA topoisomera  99.7 4.2E-14 1.8E-18  114.6  22.6  309   51-389    10-433 (471)
 18 3h4l_A DNA mismatch repair pro  99.6 6.5E-12 2.7E-16   99.6  22.7  160   71-247    23-194 (367)
 19 1h7s_A PMS1 protein homolog 2;  99.4 3.2E-12 1.3E-16  101.7  12.2  182   45-248    11-205 (365)
 20 3na3_A DNA mismatch repair pro  99.4 4.5E-11 1.9E-15   93.8  17.1  179   49-250     9-200 (348)
 21 2zbk_B Type 2 DNA topoisomeras  99.0 4.7E-10   2E-14   86.8   6.1  163   68-247    26-207 (530)
 22 1b63_A MUTL; DNA mismatch repa  99.0   9E-09 3.8E-13   78.0  11.8  161   71-249    22-195 (333)
 23 2cg9_A ATP-dependent molecular  98.2 4.6E-05 1.9E-09   52.6  12.6  157   78-249    31-211 (677)
 24 2o1u_A Endoplasmin; GRP94, HSP  98.1 3.1E-05 1.3E-09   53.8   9.9  158   78-249    50-234 (666)
 25 2wer_A ATP-dependent molecular  98.1 6.9E-05 2.9E-09   51.3  11.2  159   77-249    30-211 (220)
 26 1uyl_A HSP 86, heat shock prot  98.0 6.2E-05 2.6E-09   51.7  10.2  183   43-249    21-224 (236)
 27 1yc1_A HSP 86, heat shock prot  97.9 0.00013 5.6E-09   49.4  10.4  160   76-249    71-252 (264)
 28 1y4s_A Chaperone protein HTPG;  97.8 0.00051 2.1E-08   45.4  11.3  155   78-248    32-213 (559)
 29 2gqp_A Endoplasmin; GRP94, HSP  97.7  0.0012 5.2E-08   42.7  12.9  160   76-249    35-221 (236)
 30 3peh_A Endoplasmin homolog; st  97.7  0.0005 2.1E-08   45.5  10.8  159   78-250    51-233 (281)
 31 2ioq_A Chaperone protein HTPG;  97.7 0.00036 1.5E-08   46.5   9.4  154   78-247    32-212 (624)
 32 1gkz_A [3-methyl-2-oxobutanoat  97.6 3.7E-05 1.5E-09   53.2   4.0   94   71-169   236-350 (388)
 33 3ied_A Heat shock protein; HSP  97.6 0.00054 2.3E-08   45.2   9.8  129   96-235   120-260 (272)
 34 2btz_A Pyruvate dehydrogenase   97.6 1.7E-05 7.3E-10   55.5   2.2   87   71-169   229-327 (394)
 35 2q8g_A [pyruvate dehydrogenase  97.6 2.9E-05 1.2E-09   53.9   2.9   90   71-170   241-341 (407)
 36 2ior_A Chaperone protein HTPG;  97.5 0.00024   1E-08   47.6   6.4  176   43-247    28-232 (235)
 37 1qy5_A Endoplasmin; GRP94, NEC  97.5 0.00064 2.7E-08   44.7   8.5  160   76-249    31-217 (269)
 38 1th8_A Anti-sigma F factor; SP  97.3 0.00073 3.1E-08   44.3   7.5   91   74-183    40-135 (145)
 39 2e0a_A Pyruvate dehydrogenase   97.3 0.00011 4.5E-09   50.1   2.6   89   71-169   228-327 (394)
 40 3jz3_A Sensor protein QSEC; he  97.3 0.00026 1.1E-08   47.3   4.5   94   76-186   116-216 (222)
 41 1y8o_A [pyruvate dehydrogenase  97.2 8.7E-05 3.7E-09   50.7   1.8   89   71-169   251-351 (419)
 42 3a0y_A Sensor protein; ATP-LID  97.1  0.0012 4.8E-08   43.0   6.8   95   69-184    43-145 (152)
 43 1ysr_A Sensor-type histidine k  97.0 0.00048   2E-08   45.6   4.2   79   70-167    43-124 (150)
 44 1bxd_A ENVZ(290-450), protein   96.9  0.0018 7.6E-08   41.6   5.9   98   69-185    43-148 (161)
 45 3ke6_A Protein RV1364C/MT1410;  96.8  0.0053 2.2E-07   38.4   8.0   29   93-121   119-148 (399)
 46 1id0_A PHOQ histidine kinase;   96.7  0.0019 7.9E-08   41.5   4.8   96   69-185    40-143 (152)
 47 3d36_A Sporulation kinase B; G  96.6 0.00063 2.7E-08   44.8   1.7   95   70-184   120-222 (244)
 48 2c2a_A Sensor histidine kinase  96.5  0.0021 8.9E-08   41.2   3.9   86   70-168   135-224 (258)
 49 3ehg_A Sensor kinase (YOCF pro  96.2  0.0074 3.1E-07   37.4   5.5   45   72-119    39-86  (128)
 50 3a0r_A Sensor protein; four he  95.9   0.023 9.6E-07   34.1   7.0   10  550-559   244-253 (349)
 51 1ixm_A SPO0B, protein (sporula  95.1   0.012   5E-07   36.0   3.1   47   73-120   112-161 (192)
 52 3ehh_A Sensor kinase (YOCF pro  95.1   0.048   2E-06   31.8   6.0   44   73-119   130-176 (218)
 53 1r62_A Nitrogen regulation pro  94.5    0.11 4.8E-06   29.2   6.8   79   69-166    44-134 (160)
 54 1b3q_A Protein (chemotaxis pro  85.4    0.37 1.6E-05   25.7   2.3  120   71-192   104-253 (379)
 55 3hqc_A Tensin-like C1 domain-c  71.0     3.8 0.00016   18.8   3.8   50   64-116    19-72  (157)
 56 3dxe_A Amyloid beta A4 protein  44.0      12 0.00052   15.3   2.6   55   58-115     7-65  (140)
 57 1t6t_1 Putative protein; struc  42.0     1.1 4.7E-05   22.5  -3.0   65  464-559    21-86  (118)
 58 3lmm_A Uncharacterized protein  40.0      15 0.00061   14.8   4.9   18  372-389   331-350 (583)
 59 1mw9_X DNA topoisomerase I; de  36.4      13 0.00056   15.1   1.8   11  592-602   477-487 (592)
 60 1wvh_A Tensin, tensin1; beta s  36.1      17  0.0007   14.4   4.5   50   64-116     7-60  (134)
 61 3dcl_A TM1086; SAD, structural  32.3      15 0.00063   14.7   1.5   21  527-547   207-227 (284)
 62 3lp8_A Phosphoribosylamine-gly  27.3      18 0.00077   14.1   1.2   28  464-492   291-320 (442)
 63 3hag_A Capsid protein; jelly-r  25.8      17 0.00071   14.4   0.8   18  484-502   423-440 (504)
 64 2gai_A DNA topoisomerase I; zi  25.6      23 0.00098   13.4   1.5   28   56-84     71-99  (633)
 65 2fcj_A Small toprim domain pro  25.6      25   0.001   13.2   1.6   24  536-559    51-74  (119)
 66 3jsz_A LGT1, putative uncharac  24.4     8.7 0.00037   16.3  -0.9   62  202-269   133-194 (525)
 67 2jrt_A Uncharacterized protein  24.3     8.7 0.00037   16.3  -0.9   23  589-611    58-80  (95)
 68 2zxr_A Single-stranded DNA spe  22.8      28  0.0012   12.9   2.4   20  657-676   624-645 (666)
 69 1wgu_A APBB2, amyloid beta (A4  21.3      30  0.0012   12.7   2.9   47   63-112    20-70  (136)
 70 2ddz_A 190AA long hypothetical  21.1      18 0.00077   14.1   0.2   21  341-363    94-114 (190)

No 1  
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=897.12  Aligned_cols=386  Identities=38%  Similarity=0.656  Sum_probs=363.1

Q ss_pred             CCCCCHHHEEECCCCHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             1236975602311210343269815467775-502202443666678777618997699998289839999669843444
Q gi|254780222|r   41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE  119 (686)
Q Consensus        41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~-~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~  119 (686)
                      +++|||++||+|+||||||+|||||||||+. +|||||||||||||+||++||||++|+|+|++||+|||+||||||||+
T Consensus         1 ~~~~d~~~i~~L~~lE~Vr~RP~mYiGs~~~~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dgsisV~ddGrGIPv~   80 (391)
T 1ei1_A            1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG   80 (391)
T ss_dssp             CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS
T ss_pred             CCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             99789777846035227762998876468988722068888888432352149986799999279829999799867677


Q ss_pred             CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf             17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r  120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV  199 (686)
Q Consensus       120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~  199 (686)
                      +||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|+.|+|+|++||+..++++++++
T Consensus        81 ~h~~-~~~~~~Elif~~L~tg~nfd~~~~~~sgG~nGvGakl~NalS~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~  159 (391)
T 1ei1_A           81 IHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET  159 (391)
T ss_dssp             BCTT-TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC
T ss_pred             CCCC-CCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEEECCEECCCCEEECCC
T ss_conf             7666-685100899999713677799874331688765427999961555999996998999998099397884050575


Q ss_pred             CCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCC
Q ss_conf             77885399999842432001222289999988887530577359995164532224554112343158612221002467
Q gi|254780222|r  200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN  279 (686)
Q Consensus       200 ~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~  279 (686)
                       +++||+|+|+||+++|+....++.+.|.+|++++|||+|||+|.|++++.       +....|+|++||++|+++++..
T Consensus       160 -~~~gT~I~F~PD~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~i~~~d~~~-------~~~~~~~~~~gl~~~~~~l~~~  231 (391)
T 1ei1_A          160 -EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRD-------GKEDHFHYEGGIKAFVEYLNKN  231 (391)
T ss_dssp             -SCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------CCEEEECCCSHHHHHHHHHHHT
T ss_pred             -CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC-------CCEEEEECCCCHHHHHHHHCCC
T ss_conf             -78975899997978817865566999999999985508997799996047-------8268887076499999986258


Q ss_pred             CCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC--CCCCCC
Q ss_conf             76667752033332148015589998541467774-278883000655752413046789999998763018--833222
Q gi|254780222|r  280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS  356 (686)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~--~kk~~~  356 (686)
                      ..++++.++....+.+.   +.|+||++|++++.+ ++||||+|+|++|||||+||+++|+++|++|+++.+  ++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~---~~veva~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~l~~~i~~~~~k~~~~k~~~~~  308 (391)
T 1ei1_A          232 KTPIHPNIFYFSTEKDG---IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS  308 (391)
T ss_dssp             SCBSSSCCEEEEEEETT---EEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCC
T ss_pred             CCCCCCCCEEEEEEECC---EEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             87679976899976578---289999984488836899986322489997979999999999999998775440123456


Q ss_pred             CCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33222236426999977634560764466202523200001210158899977401356889999999999654544334
Q gi|254780222|r  357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR  436 (686)
Q Consensus       357 i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k  436 (686)
                      ++++||+++|++||+|+|+||+|+||||++|+||++++++++.+++.|..||++||..++.|++++++++++|++|+++|
T Consensus       309 ~~~~~Ik~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~i~~a~ar~~a~kar  388 (391)
T 1ei1_A          309 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR  388 (391)
T ss_dssp             CCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88889970949999998589967782017636974787889999999999999797999999999999999999998877


Q ss_pred             HH
Q ss_conf             44
Q gi|254780222|r  437 EV  438 (686)
Q Consensus       437 ~~  438 (686)
                      ++
T Consensus       389 el  390 (391)
T 1ei1_A          389 EM  390 (391)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             04


No 2  
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=876.23  Aligned_cols=384  Identities=39%  Similarity=0.625  Sum_probs=357.8

Q ss_pred             CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             36975602311210343269815467775502202443666678777618997699998289839999669843444176
Q gi|254780222|r   43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP  122 (686)
Q Consensus        43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~  122 (686)
                      .|++++||+|+||||||+|||||||||+++|||||||||||||+||++||||++|+|+|++||+|||+||||||||++||
T Consensus         2 ~y~~~~i~~L~~le~Vr~RP~mYiGst~~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg~isV~ddGrGIPv~~h~   81 (390)
T 1kij_A            2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP   81 (390)
T ss_dssp             -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET
T ss_pred             CCCHHHCEECCCCHHHHCCCCCEECCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEECCCCC
T ss_conf             62768794514611765399626558998722178876668566674369996699999699859999888726647866


Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCC-C
Q ss_conf             657870123454520024777777415631445388987620321269999418838999972794511311216767-7
Q gi|254780222|r  123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N  201 (686)
Q Consensus       123 k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~-~  201 (686)
                      + +++|+||||||+||||||||+++||+||||||||||||||||++|+|+|+|+++.|+|+|++|++..+++.+..++ .
T Consensus        82 ~-~~~~~~e~i~~~L~tg~nfd~~~~k~sgG~nGvGa~l~NalS~~f~v~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  160 (390)
T 1kij_A           82 E-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRG  160 (390)
T ss_dssp             T-TTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGG
T ss_pred             C-CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEEEEEECCEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf             7-797101999989845676578875302675764427652325203899980433799998488365772021667889


Q ss_pred             CCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCC
Q ss_conf             88539999984243200122228999998888753057735999516453222455411234315861222100246776
Q gi|254780222|r  202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS  281 (686)
Q Consensus       202 k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~  281 (686)
                      ++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++.       .....|++++|+.+|+.++..+..
T Consensus       161 ~~gT~I~F~PD~~iF~~-~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  232 (390)
T 1kij_A          161 KTGTRVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVAGLKLVFQDRQH-------GKEEVFLDKGGVASFAKALAEGED  232 (390)
T ss_dssp             CCEEEEEEEECHHHHTT-CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGG-------TEEEEECCTTHHHHHHHHHTTTSC
T ss_pred             CCEEEEEEEECHHHHCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------CCEEEEECCCCHHHHHHHHCCCCC
T ss_conf             98079999958687456-6333899988889887533884675101678-------802322227626777675304776


Q ss_pred             CCCCCCEEEEEEECCCEEEEEEEEEEECCCC-CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC--CCCCCCCC
Q ss_conf             6677520333321480155899985414677-74278883000655752413046789999998763018--83322233
Q gi|254780222|r  282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII  358 (686)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~veval~~~~~~-~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~--~kk~~~i~  358 (686)
                      ++++.++.......   .+.++++++|++++ ++++||||+|+|++|||||+||+++|+++|++|+++.+  ++++.+++
T Consensus       233 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~i~k~i~~~~~k~~~~k~~~~~i~  309 (390)
T 1kij_A          233 LLYEKPFLIRGTHG---EVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPT  309 (390)
T ss_dssp             BSCSSCEEEEEEET---TEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCEECCCCC---EEEEEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             13442101023332---035788630379876578988635887999746887999999999999987264344456788


Q ss_pred             CCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22223642699997763456076446620252320000121015889997740135688999999999965454433444
Q gi|254780222|r  359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV  438 (686)
Q Consensus       359 ~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k~~  438 (686)
                      ++|||++|++||+|+|+||+|+||||++|+||++++++++.++++|..||++||.+++.|++++++++++|++++++|++
T Consensus       310 ~~dIk~~l~~~Is~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~Ivek~l~~a~aR~~akk~re~  389 (390)
T 1kij_A          310 GDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL  389 (390)
T ss_dssp             TTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88997291999999878997268212851685378889999999999999979799999999999999999999852324


No 3  
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=867.45  Aligned_cols=385  Identities=37%  Similarity=0.621  Sum_probs=351.5

Q ss_pred             CCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             31236975602311210343269815467775502202443666678777618997699998289839999669843444
Q gi|254780222|r   40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE  119 (686)
Q Consensus        40 ~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~  119 (686)
                      ++++|+|++||+|+||||||+|||||||||   ||||||||||||||||+++|||++|+|+|++||+|||+||||||||+
T Consensus         1 m~~~y~~~~i~~L~~lE~Vr~RP~mYiGs~---gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~   77 (390)
T 1s16_A            1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVD   77 (390)
T ss_dssp             ---CCSGGGCEECCTTHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCS
T ss_pred             CCCCCCHHHCEEECCCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEC
T ss_conf             987638645846145237653896678999---85207869987465067429996799999189869999889950004


Q ss_pred             CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf             17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r  120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV  199 (686)
Q Consensus       120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~  199 (686)
                      +||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..+++.++.+
T Consensus        78 ~h~~-~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~  156 (390)
T 1s16_A           78 IHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC  156 (390)
T ss_dssp             BCTT-TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCC-CCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECC
T ss_conf             5656-687713888987603676788774230675762458989624107999986467689996399745672176145


Q ss_pred             C-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC
Q ss_conf             7-788539999984243200122228999998888753057735999516453222455411234315861222100246
Q gi|254780222|r  200 R-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE  278 (686)
Q Consensus       200 ~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~  278 (686)
                      . .++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++.       .....|+|++|+.+|+.+++.
T Consensus       157 ~~~~~gT~ItF~PD~~~F~~-~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~-------~~~~~~~~~~Gi~~y~~~~~~  228 (390)
T 1s16_A          157 GKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVN  228 (390)
T ss_dssp             CTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECCSSCHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEECHHHHCC-CCCCHHHHHHHHHHHEEECCCCEEEEEECCC-------CEEEEEEECCCHHHHHHHHHC
T ss_conf             77899689999948687044-2326999999998752886895578875168-------706777604867677888725


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCC--CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf             7766677520333321480155899985414677--74278883000655752413046789999998763018-83322
Q gi|254780222|r  279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI  355 (686)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~--~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~-~kk~~  355 (686)
                      .....+..++......   +.+.++|+++|+++.  +.++||||+|+|++|||||+||++||+++|++|++.++ ++++.
T Consensus       229 ~~~~~~~~~~~~~~~~---~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk~~  305 (390)
T 1s16_A          229 GLPTLPEKPFIGNFAG---DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV  305 (390)
T ss_dssp             TSCCEEEEEEEEEEEC---SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTC
T ss_pred             CCCCCCCCCEEEEECC---CCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8986556635877606---7725999998614344303444434376689947523079999999999999717444567


Q ss_pred             CCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23322223642699997763456076446620252320000121015889997740135688999999999965454433
Q gi|254780222|r  356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ  435 (686)
Q Consensus       356 ~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~  435 (686)
                      +++++||+++|++||+|+|+||+|+||||++|+||+++++|++.++++|..||++||..++.|+++++.+|++|++  ++
T Consensus       306 ~i~~~di~~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~~--~~  383 (390)
T 1s16_A          306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AA  383 (390)
T ss_dssp             CCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HC
T ss_pred             CCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf             4785465377699999984799607711173069768888999999999999997979999999999999999999--76


Q ss_pred             HHHHHH
Q ss_conf             444221
Q gi|254780222|r  436 REVNRK  441 (686)
Q Consensus       436 k~~~rk  441 (686)
                      |++.||
T Consensus       384 k~~~Rk  389 (390)
T 1s16_A          384 KKVVRK  389 (390)
T ss_dssp             ------
T ss_pred             HHHHCC
T ss_conf             787537


No 4  
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00  E-value=0  Score=795.79  Aligned_cols=366  Identities=23%  Similarity=0.329  Sum_probs=311.9

Q ss_pred             CCCCCHHHEEECCCCHHHHCCCCEEECCCCCC-----------------------CHHHHHHHHHHHHHHHHHCCC-CCE
Q ss_conf             12369756023112103432698154677755-----------------------022024436666787776189-976
Q gi|254780222|r   41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVIDNAMDEVIAGY-ANL   96 (686)
Q Consensus        41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~-----------------------GL~~i~~EIldNavDe~~~g~-~~~   96 (686)
                      +..|.+++||+|+||||||+|||||||||+..                       |||||||||||||+||++||+ |++
T Consensus         9 ~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~~   88 (418)
T 1pvg_A            9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR   88 (418)
T ss_dssp             ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCCE
T ss_conf             88765651404663108653999712467889832688633554000022434660024656899980247651688877


Q ss_pred             EEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-
Q ss_conf             999982-898399996698434441766578701234545200247777774156314453889876203212699994-
Q gi|254780222|r   97 IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA-  174 (686)
Q Consensus        97 I~V~i~-~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~-  174 (686)
                      |+|+|+ +||+|||+|||||||||+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|||. 
T Consensus        89 I~V~i~~~dgsisV~DnGrGIPv~~h~~-~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~  167 (418)
T 1pvg_A           89 IDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD  167 (418)
T ss_dssp             EEEEEETTTTEEEEEEESSCCCCSBCTT-TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE
T ss_conf             9999967998899996990146104366-786411578877403554457753040787552640227663565317676


Q ss_pred             -CCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCE---EEEECCC
Q ss_conf             -18838999972794511311216767-788539999984243200122228999998888753057735---9995164
Q gi|254780222|r  175 -RQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK---TCWSCDK  249 (686)
Q Consensus       175 -r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~---i~~~~~~  249 (686)
                       |+|+.|.|+|++||+..++++++.++ .++||+|+|+||++||++ ..|+.+++..|++++|+|+++++   +.++++ 
T Consensus       168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~-~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~-  245 (418)
T 1pvg_A          168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK-  245 (418)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE-
T ss_pred             CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-
T ss_conf             1498799999946841134420101356899539999838565066-11116899999999998718750899971687-


Q ss_pred             CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCC-------CCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEEC
Q ss_conf             53222455411234315861222100246776667-------75203333214801558999854146777427888300
Q gi|254780222|r  250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI  322 (686)
Q Consensus       250 ~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I  322 (686)
                               ....++|++|+..|+..+.....+..       .++.....+.   ....||+|++|++..++++||||+|
T Consensus       246 ---------~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~~eva~~~~~~~~~~~SfvN~I  313 (418)
T 1pvg_A          246 ---------SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVAFAVSDISFQQISFVNSI  313 (418)
T ss_dssp             ---------ECCCCSHHHHHHTTTTTC-----------------CCSCEEEE---EETTEEEEEEECSSSCEEEEEETTE
T ss_pred             ---------CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEE---CCCEEEEEEEECCCCEEEEEEECCC
T ss_conf             ---------1466203675464024433330002566666567630687640---3760899998615650588735461


Q ss_pred             CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHH
Q ss_conf             06557524130467899999987630188332223322223642699997763456076446620252320000121015
Q gi|254780222|r  323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD  402 (686)
Q Consensus       323 ~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~  402 (686)
                      +|++|||||+||++||+++|++|++   +++..+++++|||++|++||||+|+||+|+||||++|+|+..++++.+.+.+
T Consensus       314 ~T~~GGTHv~g~~~al~~~i~~~~~---k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~  390 (418)
T 1pvg_A          314 ATTMGGTHVNYITDQIVKKISEILK---KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL  390 (418)
T ss_dssp             ECTTCBHHHHHHHHHHHHHHHHHHC---C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             4799968079999999999998864---3034678999996092999999848984897202762595110578754629


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889997740135688999999999965
Q gi|254780222|r  403 PFDHYLVQNPIEATKLLEWVIERSEER  429 (686)
Q Consensus       403 ~l~~~l~~n~~~a~~I~~~~~~~a~~r  429 (686)
                      +|.+.+.+..     |++++++.++++
T Consensus       391 ~~l~ki~k~~-----i~~~i~~~a~~k  412 (418)
T 1pvg_A          391 EYINKIMKTD-----LATRMFEIADAN  412 (418)
T ss_dssp             HHHHHHTTSH-----HHHHHHHHHHC-
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             9999988779-----999999999866


No 5  
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00  E-value=0  Score=792.19  Aligned_cols=357  Identities=20%  Similarity=0.298  Sum_probs=309.5

Q ss_pred             EEECCCCHHHHCCCCEEECCCC----------------------CCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCC-
Q ss_conf             0231121034326981546777----------------------5502202443666678777618-997699998289-
Q gi|254780222|r   49 IRILEGLEPVRMRPGMYIGGTD----------------------EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN-  104 (686)
Q Consensus        49 i~~L~glE~VrkRP~mYIGst~----------------------~~GL~~i~~EIldNavDe~~~g-~~~~I~V~i~~d-  104 (686)
                      +|+|++|||||+|||||||||+                      .+|||||||||||||+||++|| +|+.|+|+|+.| 
T Consensus         6 y~~l~~lEhVr~RPgMYIGst~~~~~~~~~~~~~~~~~~~~~~~~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~   85 (400)
T 1zxm_A            6 YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN   85 (400)
T ss_dssp             SEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT
T ss_pred             CCCCCHHHHHHCCCCCEECCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCC
T ss_conf             27577577986399970277776765304542766401201226870058998999965548865579847999997799


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEEC--CCEEEEE
Q ss_conf             83999966984344417665787012345452002477777741563144538898762032126999941--8838999
Q gi|254780222|r  105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQ  182 (686)
Q Consensus       105 g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r--~gk~y~q  182 (686)
                      |+|||+||||||||++||+ +++|+||+|||+||||||||+++||+||||||||||||||||++|+|++++  .++.|.|
T Consensus        86 ~sitV~DnGrGIPv~~h~~-~~~~~~e~i~t~Lhaggkfd~~~yk~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q  164 (400)
T 1zxm_A           86 NLISIWNNGKGIPVVEHKV-EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ  164 (400)
T ss_dssp             TEEEEEEESSCCCCSEETT-TTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCCCEEECCC-CCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEE
T ss_conf             9899998996532002156-673210246778413156689862363464452525551103411455663023056775


Q ss_pred             EEECCCEECCCEECCCCCCCCCEEEEEEECHHHEECCCCCCHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             9727945113112167677885399999842432001222289---9999888875305773599951645322245541
Q gi|254780222|r  183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE  259 (686)
Q Consensus       183 ~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~---~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~  259 (686)
                      .|.+||...+++++..+++++||+|+|+||+++|++ ..|+.+   .+.+|++++|+|++++++.+++++..        
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~GT~I~F~PD~~iF~~-~~~~~d~~~~l~~r~~~la~l~~~~~v~~~~~~~~--------  235 (400)
T 1zxm_A          165 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKM-QSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP--------  235 (400)
T ss_dssp             EEETTTTEECCCEEEECCSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC--------
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE-EEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC--------
T ss_conf             102356645544455778999579999857440144-55158999998877898627777418981576565--------


Q ss_pred             EEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCHHHHHH
Q ss_conf             12343158612221002467766677520333321480155899985414677742788830006557524130467899
Q gi|254780222|r  260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT  339 (686)
Q Consensus       260 ~~~f~~~~Gi~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ai~  339 (686)
                            ..|+.+|++.+..+.......++....+..   ...||+|++|++++++++||||+|+|++|||||+||++||+
T Consensus       236 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~eva~~~~~~~~~~iSfvN~I~T~~GGTHv~g~~~al~  306 (400)
T 1zxm_A          236 ------VKGFRSYVDMYLKDKLDETGNSLKVIHEQV---NHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIV  306 (400)
T ss_dssp             ------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEE---ETTEEEEEEECSSSCEEEEEETTEECTTEEHHHHHHHHHHH
T ss_pred             ------CCCCEEEEEEECCCCCCCCCCCEEEEEEEC---CCEEEEEEEECCCCCCCCEEECCEECCCCCCCCCHHHHHHH
T ss_conf             ------667205224204332112476247876506---85299999864766521100034006899776436888899


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998763018833222332222364269999776345607644662025232000012101588999774013568899
Q gi|254780222|r  340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL  419 (686)
Q Consensus       340 k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~  419 (686)
                      ++|++|+++++ +++.+++++|||++|++||||+|+||+|+||||++|+||++++++++.++++|.+++.+.+     |+
T Consensus       307 ~~i~~~~~~~~-k~~~~i~~~Diregl~~visv~i~~PqFegQTK~kL~s~~~~~~~~~~l~~~fi~~~~~~~-----i~  380 (400)
T 1zxm_A          307 TKLVDVVKKKN-KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIGCG-----IV  380 (400)
T ss_dssp             HHHHHHHTTCC-----CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTTC--------
T ss_pred             HHHHHHHHHHC-CCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HH
T ss_conf             87777887625-4668789999974979999998389945782107714863125143136899999988879-----99


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999654
Q gi|254780222|r  420 EWVIERSEERL  430 (686)
Q Consensus       420 ~~~~~~a~~r~  430 (686)
                      ++++..++++.
T Consensus       381 e~l~~~~~~k~  391 (400)
T 1zxm_A          381 ESILNWVKFKA  391 (400)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999758


No 6  
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=100.00  E-value=0  Score=733.92  Aligned_cols=347  Identities=24%  Similarity=0.332  Sum_probs=313.3

Q ss_pred             ECCC--CHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf             3112--10343269815467775502202443666678777618997699998289839999669843444176657870
Q gi|254780222|r   51 ILEG--LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS  128 (686)
Q Consensus        51 ~L~g--lE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~  128 (686)
                      -|+|  |||||||||||||||+++|||||+||||||||||+++|||++|+|+|++||+|||+||||||||++|+      
T Consensus         6 ~~~~~~lE~VrkRPgMYiGst~~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg~IsV~dnGrGIPv~~~~------   79 (369)
T 3cwv_A            6 HLPGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENLV------   79 (369)
T ss_dssp             ---CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCHHHHH------
T ss_pred             CCCCCCCCCHHCCCCCEECCCCCCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCEEEEEE------
T ss_conf             37887301000599874278999865589988865322076448887799999999969999289995220778------


Q ss_pred             EEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC-----CCCC
Q ss_conf             12345452002477777741563144538898762032126999941883899997279451131121676-----7788
Q gi|254780222|r  129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKR  203 (686)
Q Consensus       129 ~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~-----~~k~  203 (686)
                             +||||+||+++.|+++||+||+| +||||||++|+|+|+|+++.|+|+|++|++..+.+.+...     +.++
T Consensus        80 -------~l~~g~~f~~~~~~~~gG~~Gg~-svvNalS~~~~Vev~r~~~~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~  151 (369)
T 3cwv_A           80 -------RVATGAGFLGRPPGDGWGWDSML-VVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER  151 (369)
T ss_dssp             -------HHHTTTTGGGSSCCCSTTTTSSH-HHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSE
T ss_pred             -------EEEECCCCCCCCCCCCCCCCCEE-EEEEEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCCCC
T ss_conf             -------87410233687776653466539-9999982089999997997999988857254788351440352676689


Q ss_pred             CEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCC
Q ss_conf             53999998424320012222899999888875305773599951645322245541123431586122210024677666
Q gi|254780222|r  204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI  283 (686)
Q Consensus       204 GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~  283 (686)
                      ||+|+|+||+++|++ ..|+.+.+..|++++|||++|+++.+.+++.       .+...|++++|+.+|+++++.+..++
T Consensus       152 gT~i~F~pD~~iF~~-~~~~~~~i~~~lr~~a~l~~gl~i~l~~~~~-------~~~~~~~~~~g~~~fv~~l~~~~~~l  223 (369)
T 3cwv_A          152 GVRVHFVPDATIFEV-LAFDRARLSRRCNELAALAPGLRVSFADLQR-------GERTLWHLPGGVAQWAHVLTEARPQL  223 (369)
T ss_dssp             EEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEEECTTHHHHHHHHHHTTSCBS
T ss_pred             CCEEEEECCCCCCCC-EEECHHHHHHHHHHHHHCCCCCCCEEEEECC-------CCEEEEEECCCHHHHHHHHHCCCCCC
T ss_conf             978999666355442-2652788864420044306996000258407-------94468973574788999875146623


Q ss_pred             CCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             7752033332148015589998541467774-278883000655752413046789999998763018833222332222
Q gi|254780222|r  284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL  362 (686)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dI  362 (686)
                      ++.++.+..+..   ...||||++|++++.+ ++||||+|+|++|||||+||++||+++|++|++    +++.+++++||
T Consensus       224 ~~~~~~~~~~~~---~~~vEval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~k----k~k~~i~~~dI  296 (369)
T 3cwv_A          224 HPEPVVFDFTWD---GLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG----ETRGAFPWARV  296 (369)
T ss_dssp             SSSCEEEEEEET---TEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT----CCGGGSCHHHH
T ss_pred             CCCCEEEEEEEE---EEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH----HCCCCCCHHHH
T ss_conf             547789997766---55389999974888623786347874899988688699999999998743----11135878887


Q ss_pred             CCCEEEEEEEEEEH--HHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             36426999977634--56076446620252320000121015889997740135688999999999
Q gi|254780222|r  363 MISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS  426 (686)
Q Consensus       363 k~~L~~~Isv~I~n--P~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a  426 (686)
                      |++|+++|++++++  |+|+||||++|+||+++..|+..+.+.|..||++||..++.|+++++.+.
T Consensus       297 regL~~visV~~~~~nP~FegQTKekL~~~~v~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~  362 (369)
T 3cwv_A          297 AQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE  362 (369)
T ss_dssp             TTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred             HCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf             528789999987898998078474761698799999999999999999979899999999998666


No 7  
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00  E-value=0  Score=723.52  Aligned_cols=250  Identities=44%  Similarity=0.747  Sum_probs=232.6

Q ss_pred             HHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCC
Q ss_conf             4433444-221100245653335677656554037997327676421001011222012211231314454108776322
Q gi|254780222|r  432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN  510 (686)
Q Consensus       432 ~~k~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N  510 (686)
                      ++++|++ +||+++...+|||||+||+++++++|||||||||||+|||+|||||++|||||||||||||++++.++|++|
T Consensus         1 ~~~ar~l~rrk~~l~~~~lpgkl~d~~~~~~~~~~l~~~egdsa~~~~~~~r~~~~~~~~pl~gk~ln~~~~~~~~~~~n   80 (420)
T 3nuh_B            1 SNAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS   80 (420)
T ss_dssp             -----------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCC
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHCC
T ss_conf             93578878410234568998620201148976557999757566777764348666688653886432402788788568


Q ss_pred             HHHHHHHHHHCCCCCCC-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEE
Q ss_conf             88999998825665433-33346552518999779877146889999999987088863393899309969997489799
Q gi|254780222|r  511 QQIMDLVQALGCRTRSQ-YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV  589 (686)
Q Consensus       511 ~Ei~~l~~~lGl~~g~~-~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~  589 (686)
                      +||.+|++||||++|.+ ||+++||||||||||||||||+||+||||||||++||+|+++||||+++||||+|++|++..
T Consensus        81 ~ei~~l~~~lg~~~~~~~~~~~~lry~~i~i~tdad~dg~hi~~ll~~~~~~~~~~l~~~g~~~~~~~p~~~~~~~k~~~  160 (420)
T 3nuh_B           81 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ  160 (420)
T ss_dssp             HHHHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEECCHHHEECCCCEE
T ss_conf             99999999976688977677000554527997357877520588999999986767650780699847246323487107


Q ss_pred             EECCHHHHHHHHHHH-----------------------------------------------------------------
Q ss_conf             937899999999987-----------------------------------------------------------------
Q gi|254780222|r  590 YAHDEEHKQKILEEF-----------------------------------------------------------------  604 (686)
Q Consensus       590 y~~~e~e~~~~~~~~-----------------------------------------------------------------  604 (686)
                      |+|++.|+++|+-+.                                                                 
T Consensus       161 y~~~~~~~~~~li~~g~e~~~L~~~~~g~~isg~eL~~ll~~~~~~~~ll~~l~rr~~~~~l~~l~~~~~l~~~~l~~~~  240 (420)
T 3nuh_B          161 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ  240 (420)
T ss_dssp             EECCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHH
T ss_pred             EEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHH
T ss_conf             88503678899997413574663155553246477888899999999999987542667789999853333244321179


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780222|r  605 --------------------------------------------------------------------------------  604 (686)
Q Consensus       605 --------------------------------------------------------------------------------  604 (686)
                                                                                                      
T Consensus       241 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~e~~~~~~~i~~~~~Gv~~~~~I~~~f~~s~e~~~l~~~~~~~~~~~~~~  320 (420)
T 3nuh_B          241 TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED  320 (420)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999986553037605899853465552215899984473225633988844767899999999875541245


Q ss_pred             ----------------------HHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             ----------------------7417886078685067788988998860394000799998664102679899999988
Q gi|254780222|r  605 ----------------------KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL  662 (686)
Q Consensus       605 ----------------------~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~l  662 (686)
                                            ...++.+.+||||||||||||+|||||||||++|+|+||+++|    +..||++|++|
T Consensus       321 ~~~~~~~~~~~i~s~~ell~~v~~~gkKGlsIQRYKGLGEMNPeQLWETTMDP~~RtLLqV~IeD----a~~AD~iFs~L  396 (420)
T 3nuh_B          321 AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD----AIAADQLFTTL  396 (420)
T ss_dssp             EEEEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHH----HHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEEECHH----HHHHHHHHHHH
T ss_conf             30125764521376899999999960789812345647777988986415281026179985134----88999899872


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             07981689999997524677517
Q gi|254780222|r  663 MGTKADERFKFIQERASFIDDVG  685 (686)
Q Consensus       663 mG~~~~~RK~wi~~~~~~~~~ld  685 (686)
                      ||++|+|||+||++||..|.|||
T Consensus       397 MGD~VEPRR~FIe~NAl~V~NLD  419 (420)
T 3nuh_B          397 MGDAVEPRRAFIEENALKAANID  419 (420)
T ss_dssp             CSCC-------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             69995788999999840323259


No 8  
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00  E-value=0  Score=681.50  Aligned_cols=255  Identities=42%  Similarity=0.701  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECC
Q ss_conf             99999999965454433444221100245653335677656554037997327676421001011222012211231314
Q gi|254780222|r  419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN  498 (686)
Q Consensus       419 ~~~~~~~a~~r~~~~k~k~~~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLN  498 (686)
                      +++++++|++|+++  ++++.||+..+..+|||||+||+++++++|||||||||||+|+|++||||+||||||||||+||
T Consensus         1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~kl~d~~~~~~~~~~l~l~EGdSA~g~~~~~rd~~~~~v~plrGK~lN   78 (767)
T 2xkj_E            1 MEMAISKAGRRLKA--AKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN   78 (767)
T ss_dssp             --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf             95799999999998--8752155556679998644010789966678999777787602001068786788653774031


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             45410877632288999998825665433333465525189997798771468899999999870888633938993099
Q gi|254780222|r  499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP  578 (686)
Q Consensus       499 v~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tP  578 (686)
                      |++|+.++|++|+||++|++||||++|+ +|.++||||||||||||||||+||+||||||||+|||+||+.||||+|+||
T Consensus        79 v~~~~~~~~~~N~ei~~l~~~lGl~~~~-~~~~~lrYg~i~imtD~D~DG~hI~~Lll~ff~~~~p~L~~~g~~~~~~tP  157 (767)
T 2xkj_E           79 TWEVSSDEVLASQEVHDIAIAIGVDPGS-DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPP  157 (767)
T ss_dssp             CTTSCTTTGGGSHHHHHHHHHHTCCTTC-CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECCC
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEECC
T ss_conf             3258888887269999999997899798-862127778479997899770379999999999878997547965897276


Q ss_pred             EEEEEECCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHH
Q ss_conf             69997489799937899999999987741788607868506778898899886039400079999866410267989999
Q gi|254780222|r  579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS  658 (686)
Q Consensus       579 l~kv~~g~~~~y~~~e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~  658 (686)
                      ||||++|++++|||+++|+++|+++.+  +..+|+||||||||||+|+|+|||||||++|+|.+|.++++    +.+++.
T Consensus       158 l~k~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~l~~~~~~~~----~~~~~~  231 (767)
T 2xkj_E          158 LFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA----HLTAGL  231 (767)
T ss_dssp             SEEEEETTEEEEESSHHHHHHHHHTCC--SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSH----HHHHHH
T ss_pred             EEEEECCCEEEECCCHHHHHHHHHHHC--CCCCCCCHHCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCH----HHHHHH
T ss_conf             799962986684477699999888723--79763200013201024699999722843468862356530----557999


Q ss_pred             HH-HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99-8807981689999997524677
Q gi|254780222|r  659 IN-KLMGTKADERFKFIQERASFID  682 (686)
Q Consensus       659 f~-~lmG~~~~~RK~wi~~~~~~~~  682 (686)
                      |+ .+||+++++||+||++++++++
T Consensus       232 ~~~~~~~~~~~~Rk~~l~~~~~~~~  256 (767)
T 2xkj_E          232 LDKLLAKKRAADRKQWLEQKGNLAD  256 (767)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHGGGCC
T ss_pred             HHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf             9998658970779999984674121


No 9  
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C*
Probab=100.00  E-value=0  Score=669.80  Aligned_cols=238  Identities=42%  Similarity=0.709  Sum_probs=221.5

Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             22110024565333567765655403799732767642100101122201221123131445410877632288999998
Q gi|254780222|r  439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ  518 (686)
Q Consensus       439 ~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~  518 (686)
                      +||++.+..+|||||+||+++++++|||||||||||+|+|+|||||++||||||||||||||+++.++|++|+||++|++
T Consensus        23 ~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~L~~  102 (268)
T 3k9f_C           23 HMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIY  102 (268)
T ss_dssp             -------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHHHHH
T ss_conf             33101335899852314478996654799977768751300326878789975388637354465989875888889998


Q ss_pred             HHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC----EEEEECCH
Q ss_conf             82566543333346552518999779877146889999999987088863393899309969997489----79993789
Q gi|254780222|r  519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDE  594 (686)
Q Consensus       519 ~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~----~~~y~~~e  594 (686)
                      ||||++|++||+++||||||||||||||||+||+||||||||+|||+||++||||+++||||+|++|+    +.+|++++
T Consensus       103 ~LGl~~g~~~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y~~~~  182 (268)
T 3k9f_C          103 TIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTD  182 (268)
T ss_dssp             HHCSCC--CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECSH
T ss_pred             HHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEEEECC
T ss_conf             74446788787433764548998279988588999999999997499702896689538708999368876326776502


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999877417886078685067788988998860394000799998664102679899999988079816899999
Q gi|254780222|r  595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI  674 (686)
Q Consensus       595 ~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi  674 (686)
                      .+++++.++.    ..+|+||||||||||+|+|+|||||||++|+|++|++++    ...++++|++|||++|++||+||
T Consensus       183 ~~~~~~~~~~----~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d----~~~~~~~~~~l~gk~~d~RK~wi  254 (268)
T 3k9f_C          183 GELEELRKQF----GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWI  254 (268)
T ss_dssp             HHHHHHHHHS----CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSC----SHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             CHHHHHHHHH----CCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCC----HHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             1458999971----888625757877879999999983595246899974474----78799999987599968999999


Q ss_pred             HHHHHH-HHHC
Q ss_conf             975246-7751
Q gi|254780222|r  675 QERASF-IDDV  684 (686)
Q Consensus       675 ~~~~~~-~~~l  684 (686)
                      ++|+.| +|++
T Consensus       255 ~~n~~~~~d~~  265 (268)
T 3k9f_C          255 EDNVKFTLEEA  265 (268)
T ss_dssp             HHHCCCC----
T ss_pred             HHHCCHHHHHH
T ss_conf             98343024443


No 10 
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00  E-value=0  Score=639.11  Aligned_cols=230  Identities=38%  Similarity=0.611  Sum_probs=214.9

Q ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             35677656554037997327676421001011222012211231314454108776322889999988256654333334
Q gi|254780222|r  452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE  531 (686)
Q Consensus       452 KL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~  531 (686)
                      -|+||+++++++|||||||||||+|+|++||||++||||||||||||||+++.++|++|+||++|++||||+++++||++
T Consensus         8 ~l~d~~~~~~~~~~L~l~EGDSA~g~a~~grd~~~~gv~PLrGK~lNv~~~~~~ki~~N~Ei~~l~~~lG~~~~~~~d~~   87 (242)
T 3m4i_A            8 HVDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIG   87 (242)
T ss_dssp             -------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGGCCGG
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             46555678812228999777674012103247786678415895361522438787642689999999667878767700


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC-EEEEECCHHHHHHHHHHHHH---C
Q ss_conf             6552518999779877146889999999987088863393899309969997489-79993789999999998774---1
Q gi|254780222|r  532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKK---H  607 (686)
Q Consensus       532 ~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~-~~~y~~~e~e~~~~~~~~~~---~  607 (686)
                      +|||||||||||||+||+||+||||||||+|||+||++||||+++||||+|+.++ ...++|++.++..|+++..+   .
T Consensus        88 ~LRYgkIiimtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~v~i~~~Pl~~vk~~k~~~~~~~~~~~~~~~~~~~~k~~~~  167 (242)
T 3m4i_A           88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK  167 (242)
T ss_dssp             GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             05646179983788552203778999998547899972976897188458997067338705668899999985663044


Q ss_pred             CCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             788607868506778898899886039400079999866410267989999998807981689999997524677517
Q gi|254780222|r  608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG  685 (686)
Q Consensus       608 ~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi~~~~~~~~~ld  685 (686)
                      ..++|+||||||||||+|+|+|||||||++|+|.+|++++    ++.++++|++|||++|++||+||++||.++.+||
T Consensus       168 ~~k~~~IkyyKGLGe~~~~Elke~~~np~~r~l~~v~~dd----~~~ad~~f~~lmgk~ad~RK~wI~~~a~~v~~lD  241 (242)
T 3m4i_A          168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD  241 (242)
T ss_dssp             CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHH----HHHHHHHHHHHHHC--------------------
T ss_pred             CCCCCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             4666652100020226899999984490304688731686----8999999999818995799999998615054278


No 11 
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00  E-value=0  Score=606.80  Aligned_cols=225  Identities=28%  Similarity=0.416  Sum_probs=203.4

Q ss_pred             CCCCCCCCCCCCC---CCCCCEEEEEEECCCCCCCCHHHCC---CCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             2456533356776---5655403799732767642100101---122201221123131445410877632288999998
Q gi|254780222|r  445 RKLRLPGKLADCS---QNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ  518 (686)
Q Consensus       445 ~~~~lpgKL~Da~---~~~~~~~eL~lvEGDSA~gsAk~gr---dr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~  518 (686)
                      +..++| ||+||+   ++++++|||||||||||+|+|++|+   +|+||||||||||||||++++.++|++|+||++|++
T Consensus         2 ~~~~~p-kl~da~~ag~~~~~~~~L~l~EGdSA~~~~~~g~~~~~rd~~g~~plrGK~lN~~~~~~~~~~~n~ei~~l~~   80 (757)
T 3l4j_A            2 RITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKK   80 (757)
T ss_dssp             CCCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred             CCCCCC-CHHHHHHHCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHHCHHHHHHHH
T ss_conf             867987-6555654079986451799965758522112765321664378853377330014698888861599999999


Q ss_pred             HHCCCCCCCC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCEEEEEE---CCEEEEECC
Q ss_conf             8256654333-3346552518999779877146889999999987088863-3938993099699974---897999378
Q gi|254780222|r  519 ALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQ---GTKSVYAHD  593 (686)
Q Consensus       519 ~lGl~~g~~~-~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~-~g~v~~~~tPl~kv~~---g~~~~y~~~  593 (686)
                      ||||++|+.| |+++|||||||||||||+||+||+||||||||+|||+||+ +||||+|+||||||+.   +++..+||+
T Consensus        81 ~lG~~~~~~~~~~~~lrYg~i~imtD~D~DG~hI~~Ll~~~f~~~~p~L~~~~g~i~~~~tPl~~~~~~~~~~~~~~fy~  160 (757)
T 3l4j_A           81 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYN  160 (757)
T ss_dssp             HTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESS
T ss_pred             HHCCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCEEEEEECCCCCCEEECCC
T ss_conf             97789798878611277685899987888703799999999988688973559989999698299980688750110332


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             99999999987741788607868506778898899886039400079999866410267989999998807981689999
Q gi|254780222|r  594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF  673 (686)
Q Consensus       594 e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~w  673 (686)
                      +.|+++|.++..  ...+|+||||||||||+|+|+|||||||++|++.+++++++     ..+.++..|+|+++++||+|
T Consensus       161 ~~e~~~~~~~~~--~~~~~~i~yyKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-----~~~~~~~~F~k~~~~~RK~w  233 (757)
T 3l4j_A          161 MPDYEKWREEES--HKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-----DKDYIDLAFSKKKADDRKEW  233 (757)
T ss_dssp             HHHHHHHHHHTG--GGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTT-----HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHC--CCCCCCCEEECCCCCCCHHHHHHEECCCCCCEEEEEECCCH-----HHHHHHHHHHCCCCHHHHHH
T ss_conf             549999876516--77643200104767676011244001554336999964615-----78899999721353058999


Q ss_pred             HHHH
Q ss_conf             9975
Q gi|254780222|r  674 IQER  677 (686)
Q Consensus       674 i~~~  677 (686)
                      |+++
T Consensus       234 L~~~  237 (757)
T 3l4j_A          234 LRQY  237 (757)
T ss_dssp             HHHC
T ss_pred             HHCC
T ss_conf             7426


No 12 
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00  E-value=0  Score=552.25  Aligned_cols=196  Identities=47%  Similarity=0.782  Sum_probs=187.3

Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf             24565333567765655403799732767642100101122201221123131445410877632288999998825665
Q gi|254780222|r  445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT  524 (686)
Q Consensus       445 ~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~  524 (686)
                      +.++|||||+||+++++++|||||||||||+|+|++||||++|||||||||+||||+|+.+||++|+||++|++||||++
T Consensus         2 ~~~~~p~KL~d~~t~~~~~ctLiltEGDSA~g~~~~grd~~~~gvfpLrGK~lNv~~~~~~~i~~N~Ei~~i~~ilGl~~   81 (692)
T 2xcs_B            2 DVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI   81 (692)
T ss_dssp             -------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             86789974010178996666899977635501000016878678875378412033698889875799999999978998


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECCHHHHHHHHHHH
Q ss_conf             43333346552518999779877146889999999987088863393899309969997489799937899999999987
Q gi|254780222|r  525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF  604 (686)
Q Consensus       525 g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~y~~~e~e~~~~~~~~  604 (686)
                      |++||+++|||||||||||||+||+||+||||||||+|||+|+++||||+|+||                          
T Consensus        82 ~~~yd~~~lRYg~i~imtDqD~DG~hIkgLlin~f~~~~p~L~~~g~~~~~~tP--------------------------  135 (692)
T 2xcs_B           82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP--------------------------  135 (692)
T ss_dssp             GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCC--------------------------
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECC--------------------------
T ss_conf             997776667768589998799883079999999999868897852956899897--------------------------


Q ss_pred             HHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             7417886078685067788988998860394000799998664102679899999988079816899999975246
Q gi|254780222|r  605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF  680 (686)
Q Consensus       605 ~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi~~~~~~  680 (686)
                                +||||||||++.|+|+|+++|++|.+.+|.+.+    ...+++.|+.|||++++.||+|+.+++..
T Consensus       136 ----------~~~k~~~~~~~~e~~~~~~~~~~r~~~~~~~~~----~~~~~~~f~~~~~~~~~~r~~~~~~~~~~  197 (692)
T 2xcs_B          136 ----------TGYKGLGEMNADQLWETTMNPEHRALLQVKLED----AIEADQTFEMLMGDVVENRRQFIEDNAVY  197 (692)
T ss_dssp             ----------SSCSSGGGSCHHHHHHHHTCTTTCCCEEEECCC----HHHHHHHHHHHHSSCHHHHHHHHHHHCCC
T ss_pred             ----------EEEECCCCCCHHHHHHHCCCCCCEEEEEEEECC----CCCHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf             ----------534416657878999870485653589999467----65278999998375423667665422301


No 13 
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00  E-value=0  Score=525.31  Aligned_cols=200  Identities=42%  Similarity=0.711  Sum_probs=189.3

Q ss_pred             CCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             21034326981546777550220244366667877761899769999828983999966984344417665787012345
Q gi|254780222|r   54 GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII  133 (686)
Q Consensus        54 glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Eli  133 (686)
                      ||||||+||||||||+   |||||||||||||+||+++|+|+.|.|+++.||+|+|+||||||||++||+ +++|+||+|
T Consensus         1 glE~Vr~RPgMYiGs~---gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~sitV~d~GrGIPv~~h~~-~~~~~~e~i   76 (201)
T 3fv5_A            1 GLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELI   76 (201)
T ss_dssp             CCHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTT-CSSBHHHHH
T ss_pred             CCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEECCC-CCCCEEEEE
T ss_conf             9567621897268998---877078688881354875489837999991898099999789646858677-897145999


Q ss_pred             EEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEEC
Q ss_conf             4520024777777415631445388987620321269999418838999972794511311216767-788539999984
Q gi|254780222|r  134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD  212 (686)
Q Consensus       134 f~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD  212 (686)
                      ||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..++++++.++ +++||+|+|+||
T Consensus        77 ~t~l~ag~~fd~~~~k~sgG~~GvG~~~vNalS~~~~v~v~r~g~~~~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD  156 (201)
T 3fv5_A           77 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD  156 (201)
T ss_dssp             HHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEECC
T ss_conf             99970357678876411377576052344765161699994189899999839930676348741467898499999788


Q ss_pred             HHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             24320012222899999888875305773599951645322245541123431
Q gi|254780222|r  213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF  265 (686)
Q Consensus       213 ~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~  265 (686)
                      +++|++ ..|+.+.|.+|++++|||||||+|.|+|++.       ..+++|||
T Consensus       157 ~~iF~~-~~~~~d~l~~rl~~~A~L~~Gl~i~~~Der~-------~~~~~f~y  201 (201)
T 3fv5_A          157 ETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCY  201 (201)
T ss_dssp             GGGSSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECC
T ss_pred             HHHCCC-CEECHHHHHHHHHHHHCCCCCCEEEEEECCC-------CCEEEEEC
T ss_conf             432375-5897999999999996047997899998478-------96888889


No 14 
>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A*
Probab=100.00  E-value=0  Score=516.05  Aligned_cols=195  Identities=43%  Similarity=0.744  Sum_probs=187.4

Q ss_pred             CCHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             21034326981546777-55022024436666787776189976999982898399996698434441766578701234
Q gi|254780222|r   54 GLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI  132 (686)
Q Consensus        54 glE~VrkRP~mYIGst~-~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~El  132 (686)
                      ||||||+|||||||||+ .+|||||||||||||+||+++++|+.|.|+++.||+|||+||||||||++||+ +++|+|||
T Consensus         1 glEhVr~RP~mYiGs~~~~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg~isV~ddG~GIPv~~h~~-~~~~~~el   79 (203)
T 3g7e_A            1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEV   79 (203)
T ss_dssp             CHHHHHHSGGGTTCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSCCTT-TCCCHHHH
T ss_pred             CCHHHHCCCCCEECCCCCCCCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCEEEE
T ss_conf             95567408988881378887274899988883445631599976899996799799998997745644576-69822068


Q ss_pred             EEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEEEC
Q ss_conf             54520024777777415631445388987620321269999418838999972794511311216767788539999984
Q gi|254780222|r  133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD  212 (686)
Q Consensus       133 if~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD  212 (686)
                      |||+||||+|||+++|++|||+||||||||||||++|+|+++|+|+.|+|+|++||+..+++.++++ +++||+|+|+||
T Consensus        80 if~~l~tg~nyd~~~~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~-~~~gT~V~F~PD  158 (203)
T 3g7e_A           80 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPS  158 (203)
T ss_dssp             HHHSTTCCSEECTTCCEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCEEEEEEEC
T ss_conf             9989840477888861311675786728989862189999998999999998499298882352576-899889999979


Q ss_pred             HHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             24320012222899999888875305773599951645
Q gi|254780222|r  213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE  250 (686)
Q Consensus       213 ~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~  250 (686)
                      +++|++...|+.++|.+|++++|||+|||+|.|+|+|.
T Consensus       159 ~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~v~~nder~  196 (203)
T 3g7e_A          159 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD  196 (203)
T ss_dssp             TTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             31026754147999999999981358985899996478


No 15 
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00  E-value=0  Score=590.50  Aligned_cols=573  Identities=12%  Similarity=0.002  Sum_probs=430.6

Q ss_pred             CCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCC----EEEEEECCCCCCC
Q ss_conf             697560231121034326981546777550220244366667877-76189976999982898----3999966984344
Q gi|254780222|r   44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE-VIAGYANLIEVSLDGNG----FLTVVDNGRGIPV  118 (686)
Q Consensus        44 Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe-~~~g~~~~I~V~i~~dg----~IsV~ddGrGIPv  118 (686)
                      |=|+....++..|--.+.+.|.-.||..+||||+++|+||||+|+ +.+|||+.|.|+|+.+|    +|+|.|||||||+
T Consensus         8 ~~~~~~~~~~~~ef~~~~~~~l~~~~~~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~   87 (621)
T 2q2e_B            8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVR   87 (621)
T ss_dssp             ---CCCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCG
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCH
T ss_conf             99852221789999997376745788621789989999971886897639998259999968996469999984899998


Q ss_pred             CCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEE-----EEEEEE--CCCEEEEEEEECCCEEC
Q ss_conf             41766578701234545200247777774156314453889876203212-----699994--18838999972794511
Q gi|254780222|r  119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE-----LHVTVA--RQNTIFSQKFSRGIPLS  191 (686)
Q Consensus       119 ~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~-----f~Vev~--r~gk~y~q~f~~g~~~~  191 (686)
                      |.|+         .+||+||+||||+  .|+.+||+||||+++||++|.+     ++|.+.  ++++.|.+.|..+....
T Consensus        88 d~~~---------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~~~~  156 (621)
T 2q2e_B           88 EQIP---------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTN  156 (621)
T ss_dssp             GGHH---------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSC
T ss_pred             HHHH---------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCC
T ss_conf             9999---------9860846677876--6511799766567688887686428638999961798725999841566556


Q ss_pred             CCEE-CCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCH
Q ss_conf             3112-167677885399999842432001222289999988887530577359995164532224554112343158612
Q gi|254780222|r  192 PLEK-KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK  270 (686)
Q Consensus       192 ~~~~-i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~  270 (686)
                      .... ...+...+++.++++||...|. ...+..+.|.+++++.|+++|++++.+.++...          .+.++..  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~----------~~~~~~~--  223 (621)
T 2q2e_B          157 EPDILVDEVRDWFRPHGTQIELEMRAA-YVKGRRQSIYEYLKATAIVNPHARITLIDPDGN----------EEVFERA--  223 (621)
T ss_dssp             SCCCCCEEECCCSCSSCCCEEEECSCC-CCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC----------CEEEECC--
T ss_pred             CCCEEECCCCCCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----------EEEEECC--
T ss_conf             773110365566444047974022343-012268999999999985087856998648997----------0687345--


Q ss_pred             HHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCC-CEEEEEEECCCC-CCCEEECCHHHHHHHHHHHHHHH
Q ss_conf             2210024677666775203333214801558999854146777-427888300065-57524130467899999987630
Q gi|254780222|r  271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTD-EGGTHESGLRVALTRGIKKYAEL  348 (686)
Q Consensus       271 dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~-~~~SFVN~I~T~-~GGTHv~g~~~ai~k~i~~~~~~  348 (686)
                        .+.++.       .              ..+|...+++... ++.+|++++.+. .+|+|..+|....++.++.++..
T Consensus       224 --~e~~~~-------~--------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (621)
T 2q2e_B          224 --TDKMPE-------P--------------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKA  280 (621)
T ss_dssp             --CCCCCC-------C--------------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHT
T ss_pred             --CCCCCC-------C--------------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             --545798-------6--------------61124088765289999998536777660168764020049999999976


Q ss_pred             CCC---CCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             188---33222332222364269999776345607644662025232000012101588999774013568899999999
Q gi|254780222|r  349 TQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER  425 (686)
Q Consensus       349 ~~~---kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~  425 (686)
                      .+.   .+...+.+++++.++.+++++.+++|++++|++  +.+...+..+...+...|..|+.+++..++.+.++....
T Consensus       281 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  358 (621)
T 2q2e_B          281 AGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVG  358 (621)
T ss_dssp             TTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
T ss_conf             588855472328999998466115766624896435786--677999999999999999999865977553278999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHH
Q ss_conf             9965454433444-221100245653335677656554037997327676421001011222012211231314454108
Q gi|254780222|r  426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS  504 (686)
Q Consensus       426 a~~r~~~~k~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~  504 (686)
                      .+.+.++.+.+.. .++...+...||++++||.+++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++..
T Consensus       359 ~~~~~~~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~  438 (621)
T 2q2e_B          359 MAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAI  438 (621)
T ss_dssp             EEESSSSCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSB
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHH
T ss_conf             99720543155156665442355554555555126511200445413465676776640101032443153778888730


Q ss_pred             -HHHHCCHHHHHHHHHHCCCCC----CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCE
Q ss_conf             -776322889999988256654----33333465525189997798771468899999-------999870888633938
Q gi|254780222|r  505 -EKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLT-------FFYQEMYDLIEQKHL  572 (686)
Q Consensus       505 -~ki~~N~Ei~~l~~~lGl~~g----~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~-------ff~~~~p~Li~~g~v  572 (686)
                       +.+.-+++|...+..+|.+++    +.++...+||.+++||+|+|.+|.||+.|+.+       +|+|+|+.|++.|++
T Consensus       439 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v  518 (621)
T 2q2e_B          439 ADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVI  518 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             13788999999999999886502132256688888756766554157899999986141256789999985454004358


Q ss_pred             EEECCCEEEEEECCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCH
Q ss_conf             99309969997489799937899999999987741788607868506778898899886039400079999866410267
Q gi|254780222|r  573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL  652 (686)
Q Consensus       573 ~~~~tPl~kv~~g~~~~y~~~e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~  652 (686)
                      |+++||+|++.......+.+.+..  +.++.++ ........++.+|+++|+|+|+|+|||||++|++++|++.+..+..
T Consensus       519 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~  595 (621)
T 2q2e_B          519 KNNGDGTVDVAIKVKNFGTSAYSF--RVHEMLP-CKVSGAKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEE  595 (621)
T ss_dssp             CCSSSCCEEEEEEECC----CCCE--EECCEES-CCC---CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGS
T ss_pred             EECCCCCCCEEEEEHHHHHHHHHH--HHHHHHH-HCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCC
T ss_conf             966688764578623132167659--9998523-1144320001334667887788773338677248999846702252


Q ss_pred             HHHHHHHHHHCCCCHHHHH
Q ss_conf             9899999988079816899
Q gi|254780222|r  653 KDTQDSINKLMGTKADERF  671 (686)
Q Consensus       653 ~~~~~~f~~lmG~~~~~RK  671 (686)
                         ...+..||++.+++|+
T Consensus       596 ---~~~~~~l~~~~v~~~~  611 (621)
T 2q2e_B          596 ---LQKLPQLIVEGIEEEL  611 (621)
T ss_dssp             ---CCCCCBBCC-------
T ss_pred             ---HHHHHHHHHCCCCHHH
T ss_conf             ---4442787748658656


No 16 
>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A*
Probab=100.00  E-value=0  Score=454.99  Aligned_cols=184  Identities=40%  Similarity=0.686  Sum_probs=171.5

Q ss_pred             CCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             21034326981546777550220244366667877761899769999828983999966984344417665787012345
Q gi|254780222|r   54 GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII  133 (686)
Q Consensus        54 glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Eli  133 (686)
                      ||||||||||||||||+.+|||||+|||||||+||+++|+|++|.|++++||+|+|+|||||||||+|++ +++|+||+|
T Consensus         1 glE~Vr~RPgMYiGst~~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~si~V~D~GRGIPvd~h~~-~~~~~~e~i   79 (184)
T 3g75_A            1 GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK-MGRPAVEVI   79 (184)
T ss_dssp             CTTTTTTCHHHHTSCSSHHHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGCEEEEECSSCCCCCBCTT-TSCBHHHHH
T ss_pred             CCHHHHHCCCCEECCCCCCCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC-CCCCHHHEE
T ss_conf             9567720899776669985222331011135665875597754599996899699999357751110245-797513188


Q ss_pred             EEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEEECH
Q ss_conf             45200247777774156314453889876203212699994188389999727945113112167677885399999842
Q gi|254780222|r  134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP  213 (686)
Q Consensus       134 f~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~  213 (686)
                      ||                       +|||||||+||+|+++|+|+.|+|+|++|++..+++++++++ ++||+|+|+||+
T Consensus        80 ~t-----------------------~svvNALS~~l~v~v~rdgk~~~q~f~~G~~~~~l~~~~~~~-~~GT~I~F~PD~  135 (184)
T 3g75_A           80 LT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTD-KTGTVIRFKADG  135 (184)
T ss_dssp             HT-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECS-CCEEEEEEEECT
T ss_pred             EE-----------------------EEEEEECCCEEEEEEEECCEEEEEEECCCEECCCCEECCCCC-CCCCEEEEECCC
T ss_conf             76-----------------------899471688499999989999999967987998733657767-997599998990


Q ss_pred             HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEC
Q ss_conf             43200122228999998888753057735999516453222455411234315
Q gi|254780222|r  214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP  266 (686)
Q Consensus       214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~  266 (686)
                      ++|++...|+.+.|.+|++++|||||||+|.|+|+|..    ....+++|||+
T Consensus       136 ~iF~~~~~~~~~~l~~rl~~~A~Ln~Gl~i~l~d~r~~----~~~~~~~f~ye  184 (184)
T 3g75_A          136 EIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDE----ENVREDSYHYE  184 (184)
T ss_dssp             TTSCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSST----TEEEEEEECCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC----CCCCCEEEECC
T ss_conf             31356652589999999999731689879999972689----88651777539


No 17 
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.69  E-value=4.2e-14  Score=114.61  Aligned_cols=309  Identities=18%  Similarity=0.262  Sum_probs=183.1

Q ss_pred             ECCCCHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC--CC----EEEEEECCCCCCCCCCC
Q ss_conf             31121034326981546-7775502202443666678777-61899769999828--98----39999669843444176
Q gi|254780222|r   51 ILEGLEPVRMRPGMYIG-GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG--NG----FLTVVDNGRGIPVENHP  122 (686)
Q Consensus        51 ~L~glE~VrkRP~mYIG-st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~--dg----~IsV~ddGrGIPv~~h~  122 (686)
                      .++-.|-..+-..| .| ++..+.|+..+.|+|+||+|.. .+|....|.|+|..  ++    .|+|.|||.|||-+.. 
T Consensus        10 ~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i-   87 (471)
T 1mu5_A           10 SLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV-   87 (471)
T ss_dssp             -CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH-
T ss_pred             HCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH-
T ss_conf             45999998863564-2778702169999999999999978855998716999997368886899999962899999999-


Q ss_pred             CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEE-----EEEEEEECC--CEEEEEEEE----CCCEEC
Q ss_conf             657870123454520024777777415631445388987620321-----269999418--838999972----794511
Q gi|254780222|r  123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD-----ELHVTVARQ--NTIFSQKFS----RGIPLS  191 (686)
Q Consensus       123 k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~-----~f~Vev~r~--gk~y~q~f~----~g~~~~  191 (686)
                              +.+|+.+++|++|...   -++|..|+|++.+..+|.     .+.|++...  ...|.....    .|.+..
T Consensus        88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i  156 (471)
T 1mu5_A           88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII  156 (471)
T ss_dssp             --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE
T ss_pred             --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
T ss_conf             --------9986502625676650---36896213489999999973794699999448997379987322135677656


Q ss_pred             C-CEECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------CCCCCCEEEE
Q ss_conf             3-1121676778853999998424320012222899999888875305773599951645322-------2455411234
Q gi|254780222|r  192 P-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------KYGIPEKEEF  263 (686)
Q Consensus       192 ~-~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~-------~~~~~~~~~f  263 (686)
                      . ...+......+||.|++..+.....     ....+...++..|..||-+++.|.+......       .......+..
T Consensus       157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~-----~~~~i~eyl~rtAi~nPha~i~~~~p~~e~~~~~r~~~~lP~~p~eik  231 (471)
T 1mu5_A          157 VERGSVENTRGFHGTSVAISIPGDWPK-----AKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVK  231 (471)
T ss_dssp             EEEEEEECCTTCCEEEEEEEEECCHHH-----HHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCCCCCCC
T ss_pred             CCCEEEECCCCCCCEEEEEEECCHHHH-----HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCC
T ss_conf             787066057666771699850301777-----777899999887640887189998699974896241123789733126


Q ss_pred             EECCCC------------------HHHHHCCCC------------------C---------------------CCCCCC-
Q ss_conf             315861------------------222100246------------------7---------------------766677-
Q gi|254780222|r  264 YFPGGL------------------KTYLQTKLE------------------N---------------------RSLISS-  285 (686)
Q Consensus       264 ~~~~Gi------------------~dyv~~~~~------------------~---------------------~~~~~~-  285 (686)
                      .++.|+                  .+|+.....                  +                     +....+ 
T Consensus       232 PHP~gv~l~~l~~ml~~~~~~~~l~~FL~~~Fs~V~~~~a~~i~~~~g~~~~~~p~~l~~~e~~~l~~a~~~~~~~~~P~  311 (471)
T 1mu5_A          232 PHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPS  311 (471)
T ss_dssp             CCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             88002006779999985546662678888754776989999999974999777714499999999999998530467898


Q ss_pred             -CCEE--------------------EEEEEC----CCEEEEEEEEEEECCC-----CCCEEEEEEECCCCCCCEEECCHH
Q ss_conf             -5203--------------------333214----8015589998541467-----774278883000655752413046
Q gi|254780222|r  286 -EIFT--------------------GKTEKK----GTHRGTVEWAIAWCEE-----NPEITSYCNTILTDEGGTHESGLR  335 (686)
Q Consensus       286 -~~~~--------------------~~~~~~----~~~~~~veval~~~~~-----~~~~~SFVN~I~T~~GGTHv~g~~  335 (686)
                       +..+                    ......    .-+...||++++|..+     ..++.=|+|-||-.-     +.=.
T Consensus       312 t~~LsPige~~i~~gl~~~~~~~f~~~~tR~p~~~~g~pf~vE~~ia~gg~~~~~~~~~v~RfaNrvPLl~-----~~~~  386 (471)
T 1mu5_A          312 ADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIY-----DEKS  386 (471)
T ss_dssp             STTCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECS-----CGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCC-----CCCC
T ss_conf             64425077899986677505610588733587523799758998542267678889833898436787565-----4554


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCC
Q ss_conf             789999998763018833222332222364269999776345607644662025
Q gi|254780222|r  336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS  389 (686)
Q Consensus       336 ~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s  389 (686)
                      .+|++++... ..+  ..+++-..    .-+.++|++-.++--|.|-.||.+..
T Consensus       387 c~~t~~~~~i-~w~--~Ygl~~~~----~p~~v~vhv~St~vpfts~~Ke~ia~  433 (471)
T 1mu5_A          387 DVIWKVVEEL-DWK--RYGIESDQ----YQMVVMVHLCSTKIPYKSAGKESIAE  433 (471)
T ss_dssp             SHHHHHHHHS-CGG--GGTCCSSC----BCEEEEEEEEESSCCBSSTTCCCBCC
T ss_pred             HHHEEHHHHC-CHH--HCCCCCCC----CCEEEEEEECCCCCCCCCCCHHHHCC
T ss_conf             1100012206-715--31879999----97799998455678978752455407


No 18 
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.56  E-value=6.5e-12  Score=99.60  Aligned_cols=160  Identities=21%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCC
Q ss_conf             55022024436666787776189976999982898--39999669843444176657870123454520024--777777
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG--GKFDNS  146 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag--gnfdd~  146 (686)
                      ...+...+.|+|+||+|   || |++|.|.++..|  +|.|.|||.||+.+      .+   ++++..-+||  .+|+|-
T Consensus        23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~------d~---~~~~~r~~TSK~~~~~dl   89 (367)
T 3h4l_A           23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPS------NY---EFLALKHYTSKIAKFQDV   89 (367)
T ss_dssp             CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGG------GT---TTTTCCEEC---------
T ss_pred             ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH------HH---HHHHHHCCCCCCCCCCCC
T ss_conf             46889999999977764---89-5989999987984699999899988978------99---876542058755532233


Q ss_pred             CEEEECCCCCHHHHHHHHEEEEEEEEEE-CCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE------ECHHH-EEC
Q ss_conf             4156314453889876203212699994-188389999727945113112167677885399999------84243-200
Q gi|254780222|r  147 TYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR------PDPKI-FGD  218 (686)
Q Consensus       147 ~yk~sgGlnGvGaklvNalS~~f~Vev~-r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~------PD~~i-Fg~  218 (686)
                      ..--|.|..|.+++...+.|. +++.+. .+...+...|..+-.....   ..+....||+|+..      |-..+ |..
T Consensus        90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GTtV~V~dLF~n~PvRrk~~~k  165 (367)
T 3h4l_A           90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSK---TTTSRNKGTTVLVSQLFHNLPVRQKEFSK  165 (367)
T ss_dssp             CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEE---EEECCSSEEEEEEESTTTTCHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHC
T ss_conf             112466644078998875256-47998505876334999833752223---54345666634632030587677887650


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             12222899999888875305773599951
Q gi|254780222|r  219 KAGFDAARLLKMTQSKAYLSGRVKTCWSC  247 (686)
Q Consensus       219 ~~~~d~~~l~~rl~~~A~L~~gl~i~~~~  247 (686)
                      ...-....+...++..|..+|++.+.+..
T Consensus       166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~  194 (367)
T 3h4l_A          166 TFKRQFTKCLTVIQGYAIINAAIKFSVWN  194 (367)
T ss_dssp             THHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             10267777788986443247970699986


No 19 
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.41  E-value=3.2e-12  Score=101.69  Aligned_cols=182  Identities=22%  Similarity=0.318  Sum_probs=125.1

Q ss_pred             CHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCC
Q ss_conf             975602311210343269815467775502202443666678777618997699998289--839999669843444176
Q gi|254780222|r   45 DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN--GFLTVVDNGRGIPVENHP  122 (686)
Q Consensus        45 ~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d--g~IsV~ddGrGIPv~~h~  122 (686)
                      .+.+|+.|..--.-+.+-|-+|=+     +..++.|+|+||+|   || |++|.|.++..  ++|+|.|||.|||-+   
T Consensus        11 ~~~~I~~L~~~~~~~i~s~~vi~~-----~~svvkELieNSiD---A~-At~I~I~v~~~g~~~I~V~DnG~Gi~~~---   78 (365)
T 1h7s_A           11 PAKAIKPIDRKSVHQICSGQVVLS-----LSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEE---   78 (365)
T ss_dssp             ------------------CEEECC-----HHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEECSCCCCGG---
T ss_pred             CCCCCEECCHHHHHHHCCCCEECC-----HHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH---
T ss_conf             987776199899988289773468-----88999999977872---89-8889999987984389999899875989---


Q ss_pred             CCCCCEEEEEEEEEEECCC--CCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-CCC-EEEEEEEECCCEECCCEECCC
Q ss_conf             6578701234545200247--777774156314453889876203212699994-188-389999727945113112167
Q gi|254780222|r  123 KFPNKSTLEIILTTLHAGG--KFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQN-TIFSQKFSRGIPLSPLEKKEK  198 (686)
Q Consensus       123 k~~~~~~~Elif~~L~agg--nfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~-r~g-k~y~q~f~~g~~~~~~~~i~~  198 (686)
                         .+   ++++..-+|+.  +++|-....|.|.+|.+++...+.|. +++.+. .++ ..|+..+.++.....   .+.
T Consensus        79 ---dl---~~~~~~~~tsk~~~~~d~~~~~t~GfRGeaL~si~~~s~-~~i~S~~~~~~~~~~~~~~~~~~~~~---~~~  148 (365)
T 1h7s_A           79 ---NF---EGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHNGKIIQ---KTP  148 (365)
T ss_dssp             ---GS---GGGGC----------CCTTCSEEESSSSSHHHHHHHHSE-EEEEEECTTCSSCEEEEECTTSCEEE---EEE
T ss_pred             ---HH---HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEECCCCCHHEEEEEECCCCCCC---CCC
T ss_conf             ---98---645420236776623365334557742278888886245-15888438974334999824665322---356


Q ss_pred             CCCCCCEEEEEEE----CH---HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6778853999998----42---43200122228999998888753057735999516
Q gi|254780222|r  199 VRNKRGTRITFRP----DP---KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD  248 (686)
Q Consensus       199 ~~~k~GT~ItF~P----D~---~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~  248 (686)
                      +....||+|+..=    -+   +.|..........+...++..|..+|++.+.+.+.
T Consensus       149 ~~~~~GTtV~v~~lF~n~PvRrk~~~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~  205 (365)
T 1h7s_A          149 YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQ  205 (365)
T ss_dssp             CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             446787589996133577224332135205899999998765522279647999973


No 20 
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.39  E-value=4.5e-11  Score=93.80  Aligned_cols=179  Identities=18%  Similarity=0.289  Sum_probs=120.6

Q ss_pred             EEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCC
Q ss_conf             023112103432698154677755022024436666787776189976999982898--399996698434441766578
Q gi|254780222|r   49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPN  126 (686)
Q Consensus        49 i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~  126 (686)
                      |+.|..--.=+.+-|-.     ...+..++.|+|+||+|   | .|++|.|.++..|  .|.|.|||.|||-+      .
T Consensus         9 I~~L~~~~~~~i~s~~v-----i~~~~s~vkELieNsiD---A-~At~I~i~i~~~g~~~I~V~DnG~Gi~~~------d   73 (348)
T 3na3_A            9 IRRLDETVVNRIAAGEV-----IQRPANAIKEMIENCLD---A-KSTSIQVIVKEGGLKLIQIQDNGTGIRKE------D   73 (348)
T ss_dssp             CCCCCHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHH---T-TCSEEEEEEEGGGTSEEEEEECSCCCCGG------G
T ss_pred             CEECCHHHHHHCCCCCE-----ECCHHHHHHHHHHHHHC---C-CCCEEEEEEECCCEEEEEEEECCCCCCHH------H
T ss_conf             66589899977189776-----55889999999865544---8-99889999998987899999899888989------9


Q ss_pred             CEEEEEEEEEEECCCCC---CCCCEEEECCCCCHHHHHHHHEEEEEEEEEEC--CCEEEEEEEECCCEECCCEECCCCCC
Q ss_conf             70123454520024777---77741563144538898762032126999941--88389999727945113112167677
Q gi|254780222|r  127 KSTLEIILTTLHAGGKF---DNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN  201 (686)
Q Consensus       127 ~~~~Elif~~L~aggnf---dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r--~gk~y~q~f~~g~~~~~~~~i~~~~~  201 (686)
                      +   .++ +.-|+-||.   +|-...-|.|..|.+++....+|. +++.+..  +...|...|.+|........   +..
T Consensus        74 l---~~~-~~~~~tSK~~~~~dl~~~~t~GfRGeAL~sI~~~s~-~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~---~~~  145 (348)
T 3na3_A           74 L---DIV-CERFTTSKLQSFEDLASISTYGFRGEALASISHVAH-VTITTKTADGKCAYRASYSDGKLKAPPKP---CAG  145 (348)
T ss_dssp             G---GTT-TSTTCCSSCCCC---------CCTTCHHHHHHHSSE-EEEEEECTTCSSEEEEEEETTEESSCCEE---ECC
T ss_pred             H---HHH-HHCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCC-EEEEEECCCCCCCCEEEEECCCCEEECCC---CCC
T ss_conf             9---999-752457677875542210266632899999985177-49996125676461799806862340442---346


Q ss_pred             CCCEEEEE------EECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             88539999------98424320012222899999888875305773599951645
Q gi|254780222|r  202 KRGTRITF------RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE  250 (686)
Q Consensus       202 k~GT~ItF------~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~  250 (686)
                      ..||+|+.      .|=...|-.........+...++..|..+|.+.+.+..+..
T Consensus       146 ~~GTtV~V~nLF~n~PvRrk~lk~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk  200 (348)
T 3na3_A          146 NQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGE  200 (348)
T ss_dssp             CSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTC
T ss_pred             CCCCEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCE
T ss_conf             7765798700226752555312581899999999999986259996499999999


No 21 
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.00  E-value=4.7e-10  Score=86.79  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=94.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf             7775502202443666678777-61899769999828---98---39999669843444176657870123454520024
Q gi|254780222|r   68 GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG---NG---FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG  140 (686)
Q Consensus        68 st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~---dg---~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag  140 (686)
                      ++..++||+.+.|+|+||+|.. ..+++..|.|+|+.   ++   +|+|.|||.|||-+-         .+.+|+..+++
T Consensus        26 ~~~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~---------l~~~f~~f~~s   96 (530)
T 2zbk_B           26 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE---------VPNAFGRVLYS   96 (530)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGG---------SHHHHTSCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHH---------HHHHHHHHCCC
T ss_conf             854656999999999999988872589883599999834899578999996289899999---------99986420347


Q ss_pred             CCCCCCCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCC--EEEEEEEEC----CCEECC-CEECCCCCCCCCEEEE
Q ss_conf             77777741563144538898762032-----12699994188--389999727----945113-1121676778853999
Q gi|254780222|r  141 GKFDNSTYEISGGLHGVGISVVNALS-----DELHVTVARQN--TIFSQKFSR----GIPLSP-LEKKEKVRNKRGTRIT  208 (686)
Q Consensus       141 gnfdd~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~g--k~y~q~f~~----g~~~~~-~~~i~~~~~k~GT~It  208 (686)
                      ++.....+   .|..|+|.+.+..||     ....|++...+  ..|...+..    +.+... ...+........+.++
T Consensus        97 ~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (530)
T 2zbk_B           97 SKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVA  173 (530)
T ss_dssp             CCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEE
T ss_pred             CCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEEEE
T ss_conf             76453244---786544589999999980597599999458996489983344356676534578665035677731466


Q ss_pred             EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             998424320012222899999888875305773599951
Q gi|254780222|r  209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC  247 (686)
Q Consensus       209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~  247 (686)
                      -......+     .....+...++..+..++.+.+.+..
T Consensus       174 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (530)
T 2zbk_B          174 ISIPGDWP-----KAKSRIYEYIKRTYIITPYAEFIFKD  207 (530)
T ss_dssp             EEEECCHH-----HHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             EECCCHHH-----HHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             50000555-----55555899999876328886389973


No 22 
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.97  E-value=9e-09  Score=78.01  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=105.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC---
Q ss_conf             5502202443666678777618997699998289--83999966984344417665787012345452002477777---
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN--GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---  145 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d--g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd---  145 (686)
                      ...+...+.|+|.||+|-    .|++|.|.++..  ..|.|.|||.||+.+      ++   .++ +.-|+-||...   
T Consensus        22 I~~~~~~vkELveNSiDA----~At~I~I~v~~~g~~~I~V~DnG~GI~~~------dl---~~~-~~r~~TSK~~~~~d   87 (333)
T 1b63_A           22 VERPASVVKELVENSLDA----GATRIDIDIERGGAKLIRIRDNGCGIKKD------EL---ALA-LARHATSKIASLDD   87 (333)
T ss_dssp             CSSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGG------GH---HHH-HSTTCCSSCCSHHH
T ss_pred             ECCHHHHHHHHHHHHCCC----CCCEEEEEEECCCEEEEEEEECCCCCCHH------HH---HHH-HHHHCCCCCCCHHH
T ss_conf             547899999998630278----98989999987976599999899676876------88---887-66410577899788


Q ss_pred             CCEEEECCCCCHHHHHHHHEEEEEEEEEECC--CEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE----ECH--HHEE
Q ss_conf             7415631445388987620321269999418--8389999727945113112167677885399999----842--4320
Q gi|254780222|r  146 STYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR----PDP--KIFG  217 (686)
Q Consensus       146 ~~yk~sgGlnGvGaklvNalS~~f~Vev~r~--gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~----PD~--~iFg  217 (686)
                      -.--.|-|-.|-..+.....|. ++|.+...  ..-|...+..+....+   ...+....||+|+-.    .-+  ..|-
T Consensus        88 l~~~~t~GFRGEAL~Si~~vs~-l~I~sr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~GTtV~V~~LF~n~PvRrk~l  163 (333)
T 1b63_A           88 LEAIISLGFRGEALASISSVSR-LTLTSRTAEQQEAWQAYAEGRDMNVT---VKPAAHPVGTTLEVLDLFYNTPARRKFL  163 (333)
T ss_dssp             HHTCCSSCCSSCHHHHHHTTSE-EEEEEECTTCSSEEEEEEETTTTEEE---EEEECCCSEEEEEEESTTTTCHHHHHTC
T ss_pred             HHHHHHCCCCHHHHHHHHHHCC-CEEEEECCCCCCEEEEEEECCCCCCC---EEECCCCCCCEEEECHHHCCCHHHHHHC
T ss_conf             5566522755079999998508-54433428988449999954776444---0253689996899604327385777525


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             01222289999988887530577359995164
Q gi|254780222|r  218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       218 ~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      ....-....+.+.+...|..+|.+.+.+..+.
T Consensus       164 ~~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~~  195 (333)
T 1b63_A          164 RTEKTEFNHIDEIIRRIALARFDVTINLSHNG  195 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             88488899999999873326884799999788


No 23 
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.19  E-value=4.6e-05  Score=52.56  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHH--HHC-----CC-------CCEEEEEECC-CCEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEE-ECC
Q ss_conf             44366667877--761-----89-------9769999828-9839999669843444-176657870123454520-024
Q gi|254780222|r   78 FSEVIDNAMDE--VIA-----GY-------ANLIEVSLDG-NGFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTL-HAG  140 (686)
Q Consensus        78 ~~EIldNavDe--~~~-----g~-------~~~I~V~i~~-dg~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L-~ag  140 (686)
                      +.|+|.||+|-  +++     ++       -=.|.|+.|+ +++++|.|||-|+--+ ++ +         -+|+. ++|
T Consensus        31 lRELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~D~GiGMt~~e~~-~---------~lgtIa~Sg  100 (677)
T 2cg9_A           31 LRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI-N---------NLGTIAKSG  100 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH-G---------GGSSSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH-H---------HHHHHHHHH
T ss_conf             998886299999999988536912116788606999975888989999518888999999-9---------877771142


Q ss_pred             CC-C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEE-CCCCCCCCCEEEEEEECH
Q ss_conf             77-7----7774156314453889876203212699994188-389999727945113112-167677885399999842
Q gi|254780222|r  141 GK-F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEK-KEKVRNKRGTRITFRPDP  213 (686)
Q Consensus       141 gn-f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~-i~~~~~k~GT~ItF~PD~  213 (686)
                      +. |    ......--.|+-|||.-.+=..+.+.+|.+...+ ..+...|..+-. ..... .......+||+|+..|..
T Consensus       101 t~~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~GT~I~L~lk~  179 (677)
T 2cg9_A          101 TKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGS-FTVTLDEVNERIGRGTILRLFLKD  179 (677)
T ss_dssp             THHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSE-EEEEECCSSCCCSSEEEEEEEECT
T ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEECCCCCCCEEEEECCCC-EEEEEECCCCCCCCCEEEEEEECC
T ss_conf             5999998545786012304761014678861637999706888872799963897-079840345567772489999378


Q ss_pred             HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             432001222289999988887530577359995164
Q gi|254780222|r  214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      +-   .--++...|...++..+-..+ ..|.+.+.+
T Consensus       180 ~~---~e~~~~~~l~~ii~kys~fi~-~PI~l~~~~  211 (677)
T 2cg9_A          180 DQ---LEYLEEKRIKEVIKRHSEFVA-YPIQLVVTK  211 (677)
T ss_dssp             TG---GGGGCHHHHHHHHHHHSTTCS-SCEEECCCC
T ss_pred             CH---HHHHHHHHHHHHHHHHCCCCC-CCEEEEECC
T ss_conf             77---877508899999998435777-666984135


No 24 
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.09  E-value=3.1e-05  Score=53.77  Aligned_cols=158  Identities=20%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHH--HHC-----C-------CCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC
Q ss_conf             44366667877--761-----8-------997699998289-839999669843444-1766578701234545200247
Q gi|254780222|r   78 FSEVIDNAMDE--VIA-----G-------YANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        78 ~~EIldNavDe--~~~-----g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg  141 (686)
                      +.|+|.||+|-  +++     +       +--.|.|++|++ ++++|.|||-|+--+ ++         +-+=|.-++|+
T Consensus        50 lRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~DnGIGMt~~El~---------~~LgtIa~Sgt  120 (666)
T 2o1u_A           50 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELV---------KNLGTIAKSGT  120 (666)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH---------HHTTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHHHHHH
T ss_conf             998987499999999998635820027888846999865989989999538888999999---------87232301328


Q ss_pred             C-----C-----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE
Q ss_conf             7-----7-----777415631445388987620321269999418-8389999727945113112167677885399999
Q gi|254780222|r  142 K-----F-----DNSTYEISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR  210 (686)
Q Consensus       142 n-----f-----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~  210 (686)
                      .     +     +...-.--.|.-|||.=.|=..|.+.+|.+... ...|..++. |-..............+||+|+-.
T Consensus       121 ~~fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~W~s~-g~~~~~~~~~~~~~~~~GT~I~L~  199 (666)
T 2o1u_A          121 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESD-SNEFSVIADPRGNTLGRGTTITLV  199 (666)
T ss_dssp             -------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEES-SSCCEEEECTTCCSSSSEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEC-CCCCEEECCCCCCCCCCCEEEEEE
T ss_conf             9999998742101231033340577451134278679999985488775058935-898357456655666897389997


Q ss_pred             ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             842432001222289999988887530577359995164
Q gi|254780222|r  211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      +..+-   .--++...|...++..+-..| ..|.+.+++
T Consensus       200 lk~~~---~e~l~~~~i~~li~kYs~fi~-~PI~l~~~~  234 (666)
T 2o1u_A          200 LKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK  234 (666)
T ss_dssp             ECTTT---TTSSSTTHHHHHHHHHSTTCC-SCEEEEECC
T ss_pred             ECCCH---HHHCCHHHHHHHHHHHCCCCC-CCEEEECCC
T ss_conf             05501---434119999999997413677-776983044


No 25 
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A
Probab=98.05  E-value=6.9e-05  Score=51.34  Aligned_cols=159  Identities=18%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHH--H------------CCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC
Q ss_conf             2443666678777--6------------18997699998289-8399996698434441766578701234545200247
Q gi|254780222|r   77 LFSEVIDNAMDEV--I------------AGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        77 i~~EIldNavDe~--~------------~g~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg  141 (686)
                      .+.|+|.||+|--  +            .++--.|.|+.|++ ..++|.|||-|+--+.-.+         -|+..-.||
T Consensus        30 flRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~~---------~L~ti~~S~  100 (220)
T 2wer_A           30 FLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN---------NLGTIAKSG  100 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH---------HTTTSCCTT
T ss_pred             EHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCEEEEECCCCEECHHHHHH---------HHHHHHCCC
T ss_conf             18788867999999999986459501125788458998538887799961873113899876---------544340334


Q ss_pred             -C-C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCE-ECCCEECCCCCCCCCEEEEEEECH
Q ss_conf             -7-7----7774156314453889876203212699994188-389999727945-113112167677885399999842
Q gi|254780222|r  142 -K-F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDP  213 (686)
Q Consensus       142 -n-f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~-~~~~~~i~~~~~k~GT~ItF~PD~  213 (686)
                       + |    ..+...---|+-|||.=.+=..+.+.+|.+...+ ..|..+|...-. .... ........+||+|+..+..
T Consensus       101 t~~~~~~~~~~~~~~~IGqFGIGfyS~FmVad~V~V~Tr~~~~~~~~W~~~~dg~~~i~~-~~~~~~~~~GT~I~L~lk~  179 (220)
T 2wer_A          101 TKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL-DEVNERIGRGTILRLFLKD  179 (220)
T ss_dssp             HHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE-CSSSCCCSSEEEEEEEECT
T ss_pred             CHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEECCCCCEEEEE-ECCCCCCCCCEEEEEEECC
T ss_conf             377775301365413035310047788863176999983599863057851799769998-1147767987799999684


Q ss_pred             HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             432001222289999988887530577359995164
Q gi|254780222|r  214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      +-- +  -++...|...++..+-.. ...|.+.+++
T Consensus       180 d~~-e--~l~~~~l~~likkys~fi-~~PI~l~~~~  211 (220)
T 2wer_A          180 DQL-E--YLEEKRIKEVIKRHSEFV-AYPIQLVVTK  211 (220)
T ss_dssp             TCG-G--GGCHHHHHHHHHHHCTTC-CSCEEECCCC
T ss_pred             CHH-H--HCCHHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf             488-7--659889999999987486-8576993357


No 26 
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=98.00  E-value=6.2e-05  Score=51.65  Aligned_cols=183  Identities=17%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH--HC------------CCCCEEEEEECCC-CEE
Q ss_conf             36975602311210343269815467775502202443666678777--61------------8997699998289-839
Q gi|254780222|r   43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV--IA------------GYANLIEVSLDGN-GFL  107 (686)
Q Consensus        43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~--~~------------g~~~~I~V~i~~d-g~I  107 (686)
                      .++++-    .+|=+++... -|   ++.   .-.+.|+|.||+|--  ++            ++--.|.|.++.+ ..+
T Consensus        21 ~Fqae~----~~ll~ll~~s-LY---S~k---eiFLRELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl   89 (236)
T 1uyl_A           21 AFQAEI----AQLMSLIINT-FY---SNK---EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTL   89 (236)
T ss_dssp             ECCHHH----HHHHHHHHHS-CC---SCT---THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEE
T ss_pred             EEEHHH----HHHHHHHHHC-CC---CCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf             640448----7799998533-68---997---211999986799999999999745940015677737999986988789


Q ss_pred             EEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC-----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEE
Q ss_conf             999669843444176657870123454520024777-----7774156314453889876203212699994188-3899
Q gi|254780222|r  108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFS  181 (686)
Q Consensus       108 sV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnf-----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~  181 (686)
                      +|.|||-|+--+.-.++        +=+..++|..-     ++....--.|+-|||.-.+=..+.+.+|.+...+ ..|.
T Consensus        90 ~I~DnGiGMt~~el~~~--------LgtIa~Sgt~~f~~~~~~~~d~~~IGqFGVGFyS~FmVad~V~V~Tk~~~~~~~~  161 (236)
T 1uyl_A           90 TIVDTGIGMTKADLINN--------LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYA  161 (236)
T ss_dssp             EEEECSCCCCHHHHHTG--------GGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEE
T ss_pred             EEEECCCCCCHHHHHHH--------HHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCEEEEEECCCCCCCCE
T ss_conf             99968977578999987--------2234303619999875501561222111521354023467689997469876430


Q ss_pred             EEEECCCEECCCEECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99727945113112167677885399999842432001222289999988887530577359995164
Q gi|254780222|r  182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       182 q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      ..|..+ ..-...........+||+|+-.+..+- .+  -.+...|...++..+...+ ..|.+++++
T Consensus       162 w~s~g~-g~~~i~~~~~~~~~~GT~I~L~lk~d~-~e--fl~~~~i~~iikkys~fi~-~PI~l~~~~  224 (236)
T 1uyl_A          162 WESSAG-GSFTVRTDTGEPMGRGTKVILHLKEDQ-TE--YLEERRIKEIVKKHSQFIG-YPITLFVEK  224 (236)
T ss_dssp             EEECST-TEEEEEECCSSCCSSEEEEEEEECGGG-GG--GGSHHHHHHHHHHHCTTCS-SCEEECCC-
T ss_pred             EEECCC-CCEEEEEECCCCCCCCCEEEEEECCCH-HH--HHCHHHHHHHHHHHHHCCC-CCEEEECCC
T ss_conf             781378-873798504555676617999847776-88--7198999999999864668-686995067


No 27 
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.90  E-value=0.00013  Score=49.40  Aligned_cols=160  Identities=19%  Similarity=0.269  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHH--HH-----C-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf             0244366667877--76-----1-------8997699998289-839999669843444176657870123454520024
Q gi|254780222|r   76 HLFSEVIDNAMDE--VI-----A-------GYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG  140 (686)
Q Consensus        76 ~i~~EIldNavDe--~~-----~-------g~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag  140 (686)
                      -.+.|+|.||+|-  ++     .       ++.-.|.|..+.+ ++++|.|||-|+--+.-.+         -+|+.-.|
T Consensus        71 IFLRELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~~---------~lgtIa~S  141 (264)
T 1yc1_A           71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN---------NLGTIAKS  141 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH---------HHHSCTTS
T ss_pred             EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH---------HCCCHHCC
T ss_conf             008888857999999999986539522467987369998768888899996898777999997---------61650014


Q ss_pred             CC--C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEEEEECH
Q ss_conf             77--7----7774156314453889876203212699994188-389999727945113112167677885399999842
Q gi|254780222|r  141 GK--F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP  213 (686)
Q Consensus       141 gn--f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~  213 (686)
                      |.  |    .+....--.|+-|||.-.|=..+.+.+|.+...+ ..+...|..+-.- ........+..+||+|+-.+..
T Consensus       142 g~~~f~~~~~~~~d~~~IGqFGVGFyS~FMVAdkV~V~Trs~~~~~~~w~s~~~g~~-~~~~~~~~~~~~GT~I~L~Lk~  220 (264)
T 1yc1_A          142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTDTGEPMGRGTKVILHLKE  220 (264)
T ss_dssp             CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEECCSSCCSSEEEEEEEECG
T ss_pred             CCHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCE-EEEECCCCCCCCCCEEEEEECC
T ss_conf             638889875402564400001522122023477579997589986443786406872-7996777889999489999688


Q ss_pred             HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             432001222289999988887530577359995164
Q gi|254780222|r  214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      +- .+  -++.+.|...++..+-..+ ..|.+.+++
T Consensus       221 d~-~E--fle~~rl~~lIkkYS~fI~-~PI~l~~e~  252 (264)
T 1yc1_A          221 DQ-TE--YLEERRIKEIVKKHSQFIG-YPITLFVEK  252 (264)
T ss_dssp             GG-GG--GGSHHHHHHHHHHHTTTCS-SCEEECCCC
T ss_pred             CH-HH--HCCHHHHHHHHHHHHHCCC-CCEEEEECC
T ss_conf             72-78--6699899999998763668-686996067


No 28 
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.75  E-value=0.00051  Score=45.40  Aligned_cols=155  Identities=21%  Similarity=0.195  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHH--HC------------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC
Q ss_conf             443666678777--61------------8997699998289-839999669843444-1766578701234545200247
Q gi|254780222|r   78 FSEVIDNAMDEV--IA------------GYANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        78 ~~EIldNavDe~--~~------------g~~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg  141 (686)
                      +.|+|.||+|-.  ++            +.--.|.|+++++ ++++|.|||-|+--+ ++         +-.-|...+|+
T Consensus        32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~---------~~lgtIa~Sgt  102 (559)
T 1y4s_A           32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI---------DHLGTIAKSGT  102 (559)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHH---------HHHSCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHEEHHH
T ss_conf             888887299999999998614931007898827999973889989999628889999999---------85113253518


Q ss_pred             C-C------CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC----EEEEEEEECCCEECCCEECCCCCCCCCEEEEEE
Q ss_conf             7-7------7774156314453889876203212699994188----389999727945113112167677885399999
Q gi|254780222|r  142 K-F------DNSTYEISGGLHGVGISVVNALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR  210 (686)
Q Consensus       142 n-f------dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g----k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~  210 (686)
                      + |      +.....--.|.-|||.-.+=..+.+.+|.+...|    ..|.-+...+ ..-.+...  ....+||+|+..
T Consensus       103 ~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa~~V~V~tr~~~~~~~~~~~w~~~g~-~~~~~~~~--~~~~~GT~I~L~  179 (559)
T 1y4s_A          103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-GEYTVADI--TKEDRGTEITLH  179 (559)
T ss_dssp             CCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS-SEEEEEEE--CCCSCEEEEEEE
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC-CCEEECCC--CCCCCCEEEEEE
T ss_conf             999998453125544545532100124554466799997227877774379997798-62584467--777787478740


Q ss_pred             ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             84243200122228999998888753057735999516
Q gi|254780222|r  211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD  248 (686)
Q Consensus       211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~  248 (686)
                      +-.+- .  --.+.+.|...++..+-..+ ..|.+.++
T Consensus       180 lk~~~-~--efl~~~~l~~li~kys~fi~-~PI~l~~~  213 (559)
T 1y4s_A          180 LREGE-D--EFLDDWRVRSIISKYSDHIA-LPVEIEKR  213 (559)
T ss_dssp             ECTTC-G--GGSCHHHHHHHHHHHHTTCS-SCEEEEEE
T ss_pred             ECCCH-H--HHHHHHHHHHHHHHHCCCCC-CCEEEEEC
T ss_conf             05546-7--66317899999986040446-66375440


No 29 
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A*
Probab=97.72  E-value=0.0012  Score=42.74  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC
Q ss_conf             02443666678777--6-----18-------997699998289-839999669843444176657870123454520024
Q gi|254780222|r   76 HLFSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG  140 (686)
Q Consensus        76 ~i~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag  140 (686)
                      -.+.|+|.||+|-.  +     .+       +--.|.|..+++ ..++|.|||-|+--+.-         .--|++.-.|
T Consensus        35 vfLRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el---------~~~lgtIa~S  105 (236)
T 2gqp_A           35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL---------VKNLGTIAKS  105 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH---------HHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHH---------HHHHHHHHHC
T ss_conf             2099998789999999999966494100467771699976588888999845522159999---------8876766621


Q ss_pred             C-C-CC---------CCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEE
Q ss_conf             7-7-77---------774156314453889876203212699994188-3899997279451131121676778853999
Q gi|254780222|r  141 G-K-FD---------NSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT  208 (686)
Q Consensus       141 g-n-fd---------d~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~It  208 (686)
                      | . |-         +....---|+-|||.-.+=..+.+.+|.+...+ ..|..+ ++|...............+||+|+
T Consensus       106 gt~~f~~~~~~~~~~~~~~~~lIGqFGVGFyS~FmVAd~V~V~sr~~~~~~~~W~-s~g~~~~~i~~~~~~~~~~GT~I~  184 (236)
T 2gqp_A          106 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWE-SDSNEFSVIADPRGNTLGRGTTIT  184 (236)
T ss_dssp             ------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEE-ESSSCEEEEECTTCSCSSSEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECEEEEEEECCCCCCCEEE-ECCCCCEEEECCCCCCCCCCEEEE
T ss_conf             4288887655320034531113532572305767330559999821678774599-458871797313577789984999


Q ss_pred             EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99842432001222289999988887530577359995164
Q gi|254780222|r  209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      ..+-.+-   .--++...|...++..+-.. ...|.+.+++
T Consensus       185 L~lk~~~---~e~l~~~~l~~li~kys~fi-~~PI~l~~~k  221 (236)
T 2gqp_A          185 LVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK  221 (236)
T ss_dssp             EEECGGG---GGGGCHHHHHHHHHHHHTTC-SSCEEEEEEC
T ss_pred             EEECCCC---HHHCCHHHHHHHHHHHHHCC-CCCEEECCCC
T ss_conf             9988877---45579999999999986187-8797976444


No 30 
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.71  E-value=0.0005  Score=45.47  Aligned_cols=159  Identities=19%  Similarity=0.234  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-CCC
Q ss_conf             443666678777--6-----18-------997699998289-8399996698434441766578701234545200-247
Q gi|254780222|r   78 FSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH-AGG  141 (686)
Q Consensus        78 ~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~-agg  141 (686)
                      +.|+|.||+|-.  +     .+       ..-.|.|.+|++ +.++|.|||-|+--+--.+         -+|+.- +|.
T Consensus        51 LRELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~~~~l~I~DnGIGMt~~el~~---------~LgtIa~Sgt  121 (281)
T 3peh_A           51 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN---------NLGTIAKSGT  121 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH---------HHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHH---------HHHHHCCCCH
T ss_conf             7778867999999999997369211178876269988739999899997981567899997---------7533134343


Q ss_pred             -CCC-----CCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECC-CCCCCCCEEEEEEECH
Q ss_conf             -777-----774156314453889876203212699994188-38999972794511311216-7677885399999842
Q gi|254780222|r  142 -KFD-----NSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDP  213 (686)
Q Consensus       142 -nfd-----d~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~-~~~~k~GT~ItF~PD~  213 (686)
                       .|.     .+...--.|+-|||.-.+=..|.+.+|.+...+ ..|...|+.+- .-...... .....+||+|+..+..
T Consensus       122 ~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAdkV~V~Tk~~~~~~~~w~s~~~g-~yti~~~~~~~~~~rGT~I~L~Lk~  200 (281)
T 3peh_A          122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADA-KFTIYKDPRGATLKRGTRISLHLKE  200 (281)
T ss_dssp             HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTS-CEEEEECTTCSTTSSEEEEEEEECG
T ss_pred             HHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCC-CCEEEECCCCCCCCCCEEEEEEECC
T ss_conf             888876441255233443203122677640677999954799762089997899-8678643556556776389998566


Q ss_pred             HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             4320012222899999888875305773599951645
Q gi|254780222|r  214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE  250 (686)
Q Consensus       214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~  250 (686)
                      +- .+  -.+...|...++..+-.. ...|.+++++.
T Consensus       201 d~-~e--fl~~~~l~~likkys~fi-~~PI~l~~e~~  233 (281)
T 3peh_A          201 DA-TN--LLNDKKLMDLISKYSQFI-QFPIYLLHENV  233 (281)
T ss_dssp             GG-GG--GGSHHHHHHHHHHHTTTC-CSCEEEEEEEE
T ss_pred             HH-HH--HHCHHHHHHHHHHHCCCC-CCCEEEEEECC
T ss_conf             06-76--619999999999841476-76769701125


No 31 
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=97.66  E-value=0.00036  Score=46.46  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHH--HC-----CC-------CCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC
Q ss_conf             443666678777--61-----89-------97699998289-839999669843444-1766578701234545200247
Q gi|254780222|r   78 FSEVIDNAMDEV--IA-----GY-------ANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        78 ~~EIldNavDe~--~~-----g~-------~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg  141 (686)
                      +.|+|.||+|-.  ++     ++       -=.|.|+++++ ++++|.|||=|+--+ +|         +-+=|.-++|+
T Consensus        32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~i~DnGiGMt~~el~---------~~LgtIa~Sgt  102 (624)
T 2ioq_A           32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI---------DHLGTIAKSGT  102 (624)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH---------HHHHHHCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHHHHHH
T ss_conf             999987299999999998715913107888846999975988989999538888999999---------87667602417


Q ss_pred             C-C----C-CCCEEE-ECCCCCHHHHHHHHEEEEEEEEEECCC----EEEEEEEECCCEECCCEECCCCCCCCCEEEEEE
Q ss_conf             7-7----7-774156-314453889876203212699994188----389999727945113112167677885399999
Q gi|254780222|r  142 K-F----D-NSTYEI-SGGLHGVGISVVNALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR  210 (686)
Q Consensus       142 n-f----d-d~~yk~-sgGlnGvGaklvNalS~~f~Vev~r~g----k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~  210 (686)
                      + |    . +..... -.|.-|||.=.|=..+.+.+|.+...+    ..|..+. +|...-.....  ....+||+|+-.
T Consensus       103 ~~f~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~srs~~~~~~~~~~w~~-~g~~~~~i~~~--~~~~~GT~I~L~  179 (624)
T 2ioq_A          103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWES-AGEGEYTVADI--TKEDRGTEITLH  179 (624)
T ss_dssp             ------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEE-CSSSCCEEEEE--CCSSSEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEE-CCCCCEEECCC--CCCCCCCEEEEE
T ss_conf             999998664102443435423212000133378799997226887764179995-79871364467--767875069973


Q ss_pred             ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             8424320012222899999888875305773599951
Q gi|254780222|r  211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC  247 (686)
Q Consensus       211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~  247 (686)
                      |..+ ..  --++.+.|...++..+-.. ...|.+..
T Consensus       180 lk~d-~~--e~l~~~~i~~li~kYs~fi-~~PI~l~~  212 (624)
T 2ioq_A          180 LREG-ED--EFLDDWRVRSIISKYSDHI-ALPVEIEK  212 (624)
T ss_dssp             ECTT-CG--GGGCHHHHHHHHHHHHTTC-SSCEEEEE
T ss_pred             ECCC-HH--HHHHHHHHHHHHHHCCCCC-CCCEEEEE
T ss_conf             1650-67--6642999999898526577-87748764


No 32 
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.63  E-value=3.7e-05  Score=53.23  Aligned_cols=94  Identities=18%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCC------CCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC
Q ss_conf             55022024436666787776189------97699998289-8--399996698434441766578701234545200247
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGY------ANLIEVSLDGN-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~------~~~I~V~i~~d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg  141 (686)
                      +.-|.+++.|+|.||++-...++      ...|.|++..+ .  .|+|.|+|.|||-+.-+   .++-  --||.--++.
T Consensus       236 p~~L~~il~NLL~NAikat~e~~~~~~~~~p~I~v~i~~~~~~v~I~I~D~G~GIp~e~l~---~IF~--~fyTT~~~~~  310 (388)
T 1gkz_A          236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLD---RVMD--YHFTTAEAST  310 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTT---TTTS--TTCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHH---HHCC--CCCCCCCCCC
T ss_conf             8999999999999999997716755577788479999715886999998699987999998---7627--5524676555


Q ss_pred             ------------CCCCCCEEEECCCCCHHHHHHHHEEEEE
Q ss_conf             ------------7777741563144538898762032126
Q gi|254780222|r  142 ------------KFDNSTYEISGGLHGVGISVVNALSDEL  169 (686)
Q Consensus       142 ------------nfdd~~yk~sgGlnGvGaklvNalS~~f  169 (686)
                                  .+.+....-.-+=.|+|..++..+.+.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~isr~~ae~~  350 (388)
T 1gkz_A          311 QDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL  350 (388)
T ss_dssp             ---------------------CCSCSSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHC
T ss_conf             5543333212111135566789888704499999999986


No 33 
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7}
Probab=97.62  E-value=0.00054  Score=45.24  Aligned_cols=129  Identities=18%  Similarity=0.257  Sum_probs=72.7

Q ss_pred             EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC------CCCCEEEECCCCCHHHHHHHHEEEE
Q ss_conf             699998289-839999669843444176657870123454520024777------7774156314453889876203212
Q gi|254780222|r   96 LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF------DNSTYEISGGLHGVGISVVNALSDE  168 (686)
Q Consensus        96 ~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnf------dd~~yk~sgGlnGvGaklvNalS~~  168 (686)
                      .|+|++|++ +.++|.|||-|+--+--.++        +-|.-++|.+-      ++....--.|.-|||.-.+=..+.+
T Consensus       120 ~I~I~~Dk~~~tltI~DnGIGMt~~el~~~--------LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGVGFySaFmVAdk  191 (272)
T 3ied_A          120 IIKIKPDKEKKTLTITDNGIGMDKSELINN--------LGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNR  191 (272)
T ss_dssp             CEEEEEETTTTEEEEEECSCCCCHHHHHHH--------TTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEE
T ss_pred             EEEEEECCCCCEEEEEECCEEECHHHHHHH--------HCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCE
T ss_conf             499887587898999943323428999877--------355564653999986421444322012357541788876068


Q ss_pred             EEEEEECCCEEEEEEEEC-C-CEECCCEECC---CCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHH
Q ss_conf             699994188389999727-9-4511311216---76778853999998424320012222899999888875
Q gi|254780222|r  169 LHVTVARQNTIFSQKFSR-G-IPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA  235 (686)
Q Consensus       169 f~Vev~r~gk~y~q~f~~-g-~~~~~~~~i~---~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A  235 (686)
                      .+|.+..+...|..+... | ....+.++..   .....+||+|+..+-.+- .+  -.+...|...++..+
T Consensus       192 V~V~Tk~~~~~~~W~S~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~Lked~-~e--fl~~~~lk~lIkkYs  260 (272)
T 3ied_A          192 VEVYTKKEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEEC-DE--YLEDYKLKELIKKYS  260 (272)
T ss_dssp             EEEEEESSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGG-GG--GGSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCH-HH--HCCHHHHHHHHHHHH
T ss_conf             9999757884168875599856886443345555677999708999989770-67--659889999999886


No 34 
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.62  E-value=1.7e-05  Score=55.47  Aligned_cols=87  Identities=20%  Similarity=0.331  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCC-----CEEEEEECCC---CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf             550220244366667877761899-----7699998289---83999966984344417665787012345452002477
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGYA-----NLIEVSLDGN---GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK  142 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~~-----~~I~V~i~~d---g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn  142 (686)
                      +.-|++++.++|.||++-...++.     ..|.|++..+   -.|+|.|+|.|||-+.         .+-||...++..+
T Consensus       229 p~~L~qIl~NLl~NAikat~e~~~~~~~~~~I~V~i~~~~~~v~I~V~D~G~GI~~e~---------l~~IF~~fytt~~  299 (394)
T 2btz_A          229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRK---------IERLFSYMYSTAP  299 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH---------HHHHTCTTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCHHH---------HHHHCCCCCCCCC
T ss_conf             9999999999999999987620356888870799998579789999988999989899---------9987387621678


Q ss_pred             CCCCCEEEECC----CCCHHHHHHHHEEEEE
Q ss_conf             77774156314----4538898762032126
Q gi|254780222|r  143 FDNSTYEISGG----LHGVGISVVNALSDEL  169 (686)
Q Consensus       143 fdd~~yk~sgG----lnGvGaklvNalS~~f  169 (686)
                      -...   -+||    -.|+|.+++..+-+.+
T Consensus       300 ~~~~---~~~~~~~~G~GLGL~isk~~~~~h  327 (394)
T 2btz_A          300 TPQP---GTGGTPLAGFGYGLPISRLYAKYF  327 (394)
T ss_dssp             -----------------CCHHHHHHHHHHHT
T ss_pred             CCCC---CCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             7777---778888898150199999999986


No 35 
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.58  E-value=2.9e-05  Score=53.92  Aligned_cols=90  Identities=18%  Similarity=0.268  Sum_probs=59.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEECCC---CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf             55022024436666787776189-----97699998289---83999966984344417665787012345452002477
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGY-----ANLIEVSLDGN---GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK  142 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~-----~~~I~V~i~~d---g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn  142 (686)
                      +.-|++++.|+|.||+.-.+.++     ...|.|++..+   =.|+|.|+|.|||-+.-         +-||..+++..+
T Consensus       241 p~~L~~il~nLLkNA~ratve~~~~~~~~p~I~V~i~~~~~~v~I~IsD~G~GI~~e~l---------~~IF~~fytT~~  311 (407)
T 2q8g_A          241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI---------DRLFNYMYSTAP  311 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH---------GGGGCTTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHHCCCCCCCC
T ss_conf             99999999999999999988337668998738999984784799999989989798999---------877155432778


Q ss_pred             C---CCCCEEEECCCCCHHHHHHHHEEEEEE
Q ss_conf             7---777415631445388987620321269
Q gi|254780222|r  143 F---DNSTYEISGGLHGVGISVVNALSDELH  170 (686)
Q Consensus       143 f---dd~~yk~sgGlnGvGaklvNalS~~f~  170 (686)
                      .   +.+.-.-.+| -|+|..++-.+.+.|-
T Consensus       312 ~~~~d~~~~~~~~G-~GlGL~isr~~ae~~g  341 (407)
T 2q8g_A          312 RPRVETSRAVPLAG-FGYGLPISRLYAQYFQ  341 (407)
T ss_dssp             CCCSSCCSCCCSSC-TTCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCC-CCHHHHHHHHHHHHCC
T ss_conf             66655556689897-1154999999999879


No 36 
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.46  E-value=0.00024  Score=47.60  Aligned_cols=176  Identities=19%  Similarity=0.253  Sum_probs=96.0

Q ss_pred             CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEE
Q ss_conf             36975602311210343269815467775502202443666678777--6-----18-------997699998289-839
Q gi|254780222|r   43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFL  107 (686)
Q Consensus        43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~I  107 (686)
                      .++++-    .+|=.++.+. +|   ++.   .-.+-|+|.||+|-.  +     ..       .--.|.|++|++ .++
T Consensus        28 ~Fqae~----~~ll~ll~~s-LY---s~~---~ifLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l   96 (235)
T 2ior_A           28 GFQSEV----KQLLHLMIHS-LY---SNK---EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTL   96 (235)
T ss_dssp             ECCHHH----HHHHHHHHHH-TG---GGT---THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEE
T ss_pred             EHHHHH----HHHHHHHHCC-CC---CCC---CEEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCEE
T ss_conf             520208----7899986064-78---998---645310876599999999998715950105887743688864899889


Q ss_pred             EEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC--C-----CCC-CEEEECCCCCHHHHHHHHEEEEEEEEEECCC--
Q ss_conf             99966984344417665787012345452002477--7-----777-4156314453889876203212699994188--
Q gi|254780222|r  108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK--F-----DNS-TYEISGGLHGVGISVVNALSDELHVTVARQN--  177 (686)
Q Consensus       108 sV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn--f-----dd~-~yk~sgGlnGvGaklvNalS~~f~Vev~r~g--  177 (686)
                      +|.|||-|+.-+.-.+         -|++.-.|+.  |     .+. ...---|+-|||.-.+=..+.+.+|.+.+.+  
T Consensus        97 ~I~DnGiGMt~~el~~---------~l~tia~S~~~~f~~~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Trs~~~~  167 (235)
T 2ior_A           97 TISDNGVGMTRDEVID---------HLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEK  167 (235)
T ss_dssp             EEEECSSCCCHHHHHH---------HHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSC
T ss_pred             EEEECCCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf             9997773324788666---------6502202323889875331133441100234500255533067699984466867


Q ss_pred             --EEEEEEEECCCEECCCEECCCCCCCCCEEEEEEE--CHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             --3899997279451131121676778853999998--424320012222899999888875305773599951
Q gi|254780222|r  178 --TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP--DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC  247 (686)
Q Consensus       178 --k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~P--D~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~  247 (686)
                        ..|...+... ..-..  ....+..+||+|+..+  |..-|     .+.+.|...++..+-.. ...|.+++
T Consensus       168 ~~~~~~w~~~g~-~~~~i--~~~~~~~~GT~I~L~Lked~~ef-----l~~~~lk~iIkkys~fi-~~PI~l~~  232 (235)
T 2ior_A          168 PENGVFWESAGE-GEYTV--ADITKEDRGTEITLHLREGEDEF-----LDDWRVRSIISKYSDHI-ALPVEIEK  232 (235)
T ss_dssp             GGGEEEEEECSS-SEEEE--EEECCCSCEEEEEEEECTTCGGG-----GCHHHHHHHHHHHTTSC-CSCEEEC-
T ss_pred             CCCCEEEEECCC-CEEEE--CCCCCCCCCCEEEEEECCCHHHH-----HCHHHHHHHHHHHHHCC-CCCEEECC
T ss_conf             661135774588-60550--67888999888999989731766-----49879999999887475-81739654


No 37 
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.46  E-value=0.00064  Score=44.69  Aligned_cols=160  Identities=22%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHH--HC-----C-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-C
Q ss_conf             02443666678777--61-----8-------997699998289-8399996698434441766578701234545200-2
Q gi|254780222|r   76 HLFSEVIDNAMDEV--IA-----G-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH-A  139 (686)
Q Consensus        76 ~i~~EIldNavDe~--~~-----g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~-a  139 (686)
                      -.+.|+|.||+|-.  ++     +       +--.|.|..|++ ..++|.|||-|+--+.         +.--|+..- +
T Consensus        31 iflRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~e---------l~~~LgtIa~S  101 (269)
T 1qy5_A           31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE---------LVKNLGTIAKS  101 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH---------HHHHHHSCCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHH---------HHHHHHHHHCC
T ss_conf             218889876999999999985549522368888358841268874899982763335999---------99887766310


Q ss_pred             CCC-C---------CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEE
Q ss_conf             477-7---------7774156314453889876203212699994188-3899997279451131121676778853999
Q gi|254780222|r  140 GGK-F---------DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT  208 (686)
Q Consensus       140 ggn-f---------dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~It  208 (686)
                      |.. |         ++....---|+-|||.-.+=..+.+..|.+...+ ..|...+ +|-..............+||+|+
T Consensus       102 gt~~f~~~~~~~~~~~~~~~~~iGqFGvGfyS~FmVAd~V~V~sr~~~~~~~~W~s-~g~~~~~~~~~~~~~~~rGT~I~  180 (269)
T 1qy5_A          102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWES-DSNEFSVIADPRGNTLGRGTTIT  180 (269)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEE-CSSCEEEEECTTCSCSSSEEEEE
T ss_pred             CHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCEEEE-CCCCCEEEECCCCCCCCCCEEEE
T ss_conf             17999986342123443102235325742178898624899997148887767995-79971786156677668864999


Q ss_pred             EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99842432001222289999988887530577359995164
Q gi|254780222|r  209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK  249 (686)
Q Consensus       209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~  249 (686)
                      ..+..+-   .--.+...|...++..+-.. ...|.+.+++
T Consensus       181 L~Lk~d~---~efl~~~~l~~ii~kys~fi-~~PI~l~~~k  217 (269)
T 1qy5_A          181 LVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK  217 (269)
T ss_dssp             EEECGGG---GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC
T ss_pred             EEECCCH---HHHCCHHHHHHHHHHHHHCC-CCCEEEEEEE
T ss_conf             9987714---55369999999999885176-8687994451


No 38 
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.33  E-value=0.00073  Score=44.34  Aligned_cols=91  Identities=24%  Similarity=0.321  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEE
Q ss_conf             2202443666678777618-99769999828-98--39999669843444176657870123454520024777777415
Q gi|254780222|r   74 LHHLFSEVIDNAMDEVIAG-YANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE  149 (686)
Q Consensus        74 L~~i~~EIldNavDe~~~g-~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk  149 (686)
                      +--++.|++.||+..+..+ +...|.|++.. ++  .|+|+|||+|||-...     ..  +-.++            .+
T Consensus        40 i~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~~~~~-----~~--~~~~~------------~~  100 (145)
T 1th8_A           40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEE-----AR--QPLFT------------TK  100 (145)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSCHHH-----HT--CCC----------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHH-----CC--CCCCC------------CC
T ss_conf             9999999999998843489999089999999378999999964789585775-----37--87754------------46


Q ss_pred             EECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEE
Q ss_conf             631445388987620321269999418-8389999
Q gi|254780222|r  150 ISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQK  183 (686)
Q Consensus       150 ~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~  183 (686)
                      -..+..|+|..++..+...+.++...+ |.....+
T Consensus       101 ~~~~~~GlGL~ii~~l~d~i~i~s~~~~Gt~v~l~  135 (145)
T 1th8_A          101 PELERSGMGFTIMENFMDEVIVESEVNKGTTVYLK  135 (145)
T ss_dssp             ---CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE
T ss_conf             79995736899999969999999839996999999


No 39 
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.26  E-value=0.00011  Score=50.05  Aligned_cols=89  Identities=22%  Similarity=0.326  Sum_probs=57.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEECC--C-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf             55022024436666787776189-----9769999828--9-83999966984344417665787012345452002477
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGY-----ANLIEVSLDG--N-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK  142 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~-----~~~I~V~i~~--d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn  142 (686)
                      +.=|++++.|+|.||++-...++     ...|.|++..  + -.|+|.|+|.|||-+.-         +-||.-.++..+
T Consensus       228 p~~L~~il~NLl~NAikat~e~~~~~~~~~~I~v~v~~~~~~v~I~VsD~G~GI~~e~l---------~~IF~~fytt~~  298 (394)
T 2e0a_A          228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRII---------DRLFSYTYSTAP  298 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGH---------HHHTSTTCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCC
T ss_conf             99999999999999999998638778988728999962799799999966999898999---------876165520787


Q ss_pred             C---CCCCEEEECCCCCHHHHHHHHEEEEE
Q ss_conf             7---77741563144538898762032126
Q gi|254780222|r  143 F---DNSTYEISGGLHGVGISVVNALSDEL  169 (686)
Q Consensus       143 f---dd~~yk~sgGlnGvGaklvNalS~~f  169 (686)
                      .   |.+.-+-.|| -|+|.+++..+-+.+
T Consensus       299 ~~~~~~s~~~~~~G-tGlGL~isr~i~~~h  327 (394)
T 2e0a_A          299 TPVMDNSRNAPLAG-FGYGLPISRLYAKYF  327 (394)
T ss_dssp             CC------CCCSSC-SSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCC-CCHHHHHHHHHHHHC
T ss_conf             56566555689896-137699999999987


No 40 
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.25  E-value=0.00026  Score=47.35  Aligned_cols=94  Identities=21%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHC--CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECC
Q ss_conf             0244366667877761--89976999982898399996698434441766578701234545200247777774156314
Q gi|254780222|r   76 HLFSEVIDNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG  153 (686)
Q Consensus        76 ~i~~EIldNavDe~~~--g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgG  153 (686)
                      ..+..|+.|-++||+.  .....|.|++..+ .+.|.|||.|||-+..         +-||-....+.+      +.+.|
T Consensus       116 ~~l~~vl~NLl~NAikys~~~~~I~i~~~~~-~~~v~D~G~GI~~e~~---------~~iFe~F~r~~~------~~~~G  179 (222)
T 3jz3_A          116 LLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD-NFIVRDNGPGVTPEAL---------ARIGERFYRPPG------QTATG  179 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTCEEEEEECSS-EEEEECSCC---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-EEEECCCCCCCCHHHH---------HHHCCCCCCCCC------CCCCC
T ss_conf             9999999999999998689996799999742-4998358999899999---------986179741899------99995


Q ss_pred             CCCHHHHHHHHEEEEEEEEE----E-CCCEEEEEEEEC
Q ss_conf             45388987620321269999----4-188389999727
Q gi|254780222|r  154 LHGVGISVVNALSDELHVTV----A-RQNTIFSQKFSR  186 (686)
Q Consensus       154 lnGvGaklvNalS~~f~Vev----~-r~gk~y~q~f~~  186 (686)
                       .|+|.++|.-+-+..--++    . ..|..++.+|-.
T Consensus       180 -~GLGL~Ivk~iv~~hgG~I~v~s~~~~Gt~f~i~F~E  216 (222)
T 3jz3_A          180 -SGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE  216 (222)
T ss_dssp             ---CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC
T ss_pred             -CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf             -2678999999999839989999779898799999773


No 41 
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.22  E-value=8.7e-05  Score=50.66  Aligned_cols=89  Identities=15%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCC------CCEEEEEECC--C-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC
Q ss_conf             55022024436666787776189------9769999828--9-8399996698434441766578701234545200247
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAGY------ANLIEVSLDG--N-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG  141 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g~------~~~I~V~i~~--d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg  141 (686)
                      +.-|++++.|+|.||+.-...++      .-.|.|++..  + =.|.|.|+|.|||-+.-         +.||.-+++..
T Consensus       251 p~~L~qIL~NLL~NAikat~e~~~~~~~~~P~I~V~i~~~~~~v~I~IsD~G~GI~~e~~---------~~IF~~fytt~  321 (419)
T 1y8o_A          251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI---------DRLFNYMYSTA  321 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH---------GGGGCTTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCC
T ss_conf             999999999999989998886523467888707999985696899999879999898999---------87707576268


Q ss_pred             CC---CCCCEEEECCCCCHHHHHHHHEEEEE
Q ss_conf             77---77741563144538898762032126
Q gi|254780222|r  142 KF---DNSTYEISGGLHGVGISVVNALSDEL  169 (686)
Q Consensus       142 nf---dd~~yk~sgGlnGvGaklvNalS~~f  169 (686)
                      ..   +.+.-.--+| -|+|..+|-.+-+.+
T Consensus       322 ~~~~~~~~~~~~~~G-~GlGL~isk~~ae~~  351 (419)
T 1y8o_A          322 PRPSLEPTRAAPLAG-FGYGLPISRLYARYF  351 (419)
T ss_dssp             -----------CC---CTTHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCC-CCHHHHHHHHHHHHC
T ss_conf             877655556689896-414199999999986


No 42 
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.14  E-value=0.0012  Score=42.96  Aligned_cols=95  Identities=16%  Similarity=0.331  Sum_probs=58.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             775502202443666678777618997699998289-8--3999966984344417665787012345452002477777
Q gi|254780222|r   69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN  145 (686)
Q Consensus        69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd  145 (686)
                      .+..-|.+++.-+|+||++-.-  ....|.|+...+ +  .|+|+|+|.|||-+..+   .+      |--..++ +   
T Consensus        43 ~D~~~l~qvl~NLi~NAi~~~~--~~~~I~i~~~~~~~~v~i~V~D~G~Gi~~e~~~---~i------Fe~F~t~-k---  107 (152)
T 3a0y_A           43 ADRTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE---KI------FSPFFTT-K---  107 (152)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTT---GG------GSTTCCC-C---
T ss_pred             ECHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH---HC------CCCCEEC-C---
T ss_conf             8799999999999999999814--997799999965988999997089998999998---71------6995188-9---


Q ss_pred             CCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCCEEEEEEE
Q ss_conf             741563144538898762032-----126999941883899997
Q gi|254780222|r  146 STYEISGGLHGVGISVVNALS-----DELHVTVARQNTIFSQKF  184 (686)
Q Consensus       146 ~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~gk~y~q~f  184 (686)
                           ++| .|+|.++|.-+-     -...++...+|..|+.++
T Consensus       108 -----~~G-tGLGL~i~k~iv~~~hgg~i~~~~~~~Gt~f~i~l  145 (152)
T 3a0y_A          108 -----TQG-TGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEI  145 (152)
T ss_dssp             -------C-CCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEE
T ss_pred             -----CCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf             -----895-06799999999999589999999669947999995


No 43 
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.05  E-value=0.00048  Score=45.58  Aligned_cols=79  Identities=23%  Similarity=0.453  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             7550220244366667877761899769999828-98--39999669843444176657870123454520024777777
Q gi|254780222|r   70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS  146 (686)
Q Consensus        70 ~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~  146 (686)
                      +..-|.+++.-+|+||+..   +....|.|.... ++  .|+|.|||.|||-+..         +-||-....+.+   .
T Consensus        43 d~~~l~~vl~NLl~NAiky---~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~~~~---------~~iF~~F~r~~~---~  107 (150)
T 1ysr_A           43 LPAGLRLAVDNAIANAVKH---GGATLVQLSAVSSRAGVEIAIDDNGSGVPEGER---------QVVFERFSRGST---A  107 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TCCSEEEEEEEEETTEEEEEEEESSSCCCGGGH---------HHHHTSCC--------
T ss_pred             CHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCC---C
T ss_conf             9999999999999999974---899789999998099999999984879798999---------985576341799---9


Q ss_pred             CEEEECCCCCHHHHHHHHEEE
Q ss_conf             415631445388987620321
Q gi|254780222|r  147 TYEISGGLHGVGISVVNALSD  167 (686)
Q Consensus       147 ~yk~sgGlnGvGaklvNalS~  167 (686)
                        + .+| .|+|.++|..+-+
T Consensus       108 --~-~~G-~GLGL~i~k~i~~  124 (150)
T 1ysr_A          108 --S-HSG-SGLGLALVAQQAQ  124 (150)
T ss_dssp             ----------CCCHHHHHHHH
T ss_pred             --C-CCC-CCHHHHHHHHHHH
T ss_conf             --9-896-0779999999999


No 44 
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.88  E-value=0.0018  Score=41.61  Aligned_cols=98  Identities=18%  Similarity=0.315  Sum_probs=57.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             77550220244366667877761899769999828-98--3999966984344417665787012345452002477777
Q gi|254780222|r   69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN  145 (686)
Q Consensus        69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd  145 (686)
                      .+..-|..++.-+|+||+.-.    ...|.|++.. ++  .|+|.|||.|||-+..         +-||--...+.+   
T Consensus        43 ~d~~~l~~vl~NLi~NAik~~----~~~I~i~~~~~~~~~~i~V~D~G~GI~~e~~---------~~iF~~F~r~~~---  106 (161)
T 1bxd_A           43 MHPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR---------KHLFQPFVRGDS---  106 (161)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGG---------GCSSCCCCCCSC---
T ss_pred             ECHHHHHHHHHHHHHHHHHHC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------HHHHCCCEECCC---
T ss_conf             889999999999999999747----9859999999669899999986755599999---------886588358878---


Q ss_pred             CCEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEEE
Q ss_conf             7415631445388987620321----26999941-8838999972
Q gi|254780222|r  146 STYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKFS  185 (686)
Q Consensus       146 ~~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f~  185 (686)
                       + +.++| .|+|.++|..+-+    .+.|+... .|..++..|-
T Consensus       107 -~-~~~~G-~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP  148 (161)
T 1bxd_A          107 -A-RTISG-TGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLP  148 (161)
T ss_dssp             -C-CCCCC-CSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEEC
T ss_pred             -C-CCCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf             -8-86888-660799999999987998999973999189999998


No 45 
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.84  E-value=0.0053  Score=38.44  Aligned_cols=29  Identities=24%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             CCCEEEEEEC-CCCEEEEEECCCCCCCCCC
Q ss_conf             9976999982-8983999966984344417
Q gi|254780222|r   93 YANLIEVSLD-GNGFLTVVDNGRGIPVENH  121 (686)
Q Consensus        93 ~~~~I~V~i~-~dg~IsV~ddGrGIPv~~h  121 (686)
                      +++-.-+.+| .+|.++++|-|.--|.=+.
T Consensus       119 f~t~~~~~id~~~~~l~~~~AGhp~~ll~~  148 (399)
T 3ke6_A          119 SATMCVGSLDFTSGEFQYCTAGHPPPLLVT  148 (399)
T ss_dssp             TCEEEEEEEETTTCEEEEEEESSCCCEEEC
T ss_pred             CCCCEEEEEECCCCEEEEECCCCCCCEEEC
T ss_conf             412559999899997998057699825886


No 46 
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=96.69  E-value=0.0019  Score=41.52  Aligned_cols=96  Identities=20%  Similarity=0.392  Sum_probs=55.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             7755022024436666787776189976999982--89-83999966984344417665787012345452002477777
Q gi|254780222|r   69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD--GN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN  145 (686)
Q Consensus        69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~--~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd  145 (686)
                      .+..-|.+++.-+|+||+.-.    ...|.|.+.  .+ -.|+|.|||.|||-+..+   .      ||-....+.+-  
T Consensus        40 ~d~~~l~~vl~NLl~NAiky~----~~~i~I~~~~~~~~~~i~V~D~G~Gi~~~~~~---~------iF~~F~r~~~~--  104 (152)
T 1id0_A           40 GEQNDFVEVMGNVLDNACKYC----LEFVEISARQTDEHLYIVVEDDGPGIPLSKRE---V------IFDRGQRVDTL--  104 (152)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHC----SSEEEEEEEECSSCEEEEEEESSSCCCGGGTT---G------GGSCCCCTTCC--
T ss_pred             ECHHHHHHHHHHHHHHHHHHC----CCCEEEEEEEECCEEEEEEEECCCCCCHHHHH---H------HCCCCCCCCCC--
T ss_conf             889999999999999999977----99889999997999999999889998989999---8------72897048999--


Q ss_pred             CCEEEECCCCCHHHHHHHHEEEEEE----EEEEC-CCEEEEEEEE
Q ss_conf             7415631445388987620321269----99941-8838999972
Q gi|254780222|r  146 STYEISGGLHGVGISVVNALSDELH----VTVAR-QNTIFSQKFS  185 (686)
Q Consensus       146 ~~yk~sgGlnGvGaklvNalS~~f~----Vev~r-~gk~y~q~f~  185 (686)
                           ..| .|+|.++|..+-+...    ++... .|..++.+|-
T Consensus       105 -----~~G-~GLGL~i~k~iv~~h~G~I~~~s~~~~G~~f~i~lP  143 (152)
T 1id0_A          105 -----RPG-QGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFG  143 (152)
T ss_dssp             -----CTT-CCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEEC
T ss_pred             -----CCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEC
T ss_conf             -----897-147999999999985998999975998579999987


No 47 
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.56  E-value=0.00063  Score=44.75  Aligned_cols=95  Identities=18%  Similarity=0.334  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             7550220244366667877761899769999828-98--39999669843444176657870123454520024777777
Q gi|254780222|r   70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS  146 (686)
Q Consensus        70 ~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~  146 (686)
                      +..-|.+++.-+|+||++-.-  ....|.|.+.. ++  .|+|.|+|.|||-+..+   .      ||--..++.+    
T Consensus       120 d~~~l~qvl~NLl~NAik~~~--~~~~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~---~------iFepF~~tk~----  184 (244)
T 3d36_A          120 EREKFRQCLLNVMKNAIEAMP--NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLE---R------LGEPYFTTKG----  184 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCT--TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHH---H------TTSTTCCSSG----
T ss_pred             CHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHH---H------HCCCCCCCCC----
T ss_conf             799999999999999998676--897689999960888999999868898989999---8------6699865899----


Q ss_pred             CEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEE
Q ss_conf             415631445388987620321----26999941-883899997
Q gi|254780222|r  147 TYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKF  184 (686)
Q Consensus       147 ~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f  184 (686)
                          ++| .|+|.++|.-+-+    ...|+... .|..|..+|
T Consensus       185 ----~~G-tGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~l  222 (244)
T 3d36_A          185 ----VKG-TGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYL  222 (244)
T ss_dssp             ----GGC-CSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEE
T ss_pred             ----CCC-CCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE
T ss_conf             ----996-47689999999998899799996699966999998


No 48 
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.48  E-value=0.0021  Score=41.16  Aligned_cols=86  Identities=20%  Similarity=0.355  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             75502202443666678777618-99769999828-98--3999966984344417665787012345452002477777
Q gi|254780222|r   70 DEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN  145 (686)
Q Consensus        70 ~~~GL~~i~~EIldNavDe~~~g-~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd  145 (686)
                      |..-|..++.-+|+||+.-...| ....|.|.... ++  .|+|.|+|.|||-+..         +-||.....+.+-..
T Consensus       135 D~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D~G~GI~~e~~---------~~iF~~F~r~~~~~~  205 (258)
T 2c2a_A          135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK---------DRIFEQFYRVDSSLT  205 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT---------TGGGSTTCCCC----
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCCCCC
T ss_conf             79999999999999999855358982489999960599899999982898898999---------987459882888888


Q ss_pred             CCEEEECCCCCHHHHHHHHEEEE
Q ss_conf             74156314453889876203212
Q gi|254780222|r  146 STYEISGGLHGVGISVVNALSDE  168 (686)
Q Consensus       146 ~~yk~sgGlnGvGaklvNalS~~  168 (686)
                         +-.+| .|+|.++|.-+-+.
T Consensus       206 ---~~~~G-~GLGL~i~k~iv~~  224 (258)
T 2c2a_A          206 ---YEVPG-TGLGLAITKEIVEL  224 (258)
T ss_dssp             ---------CCCTHHHHHHHHHH
T ss_pred             ---CCCCC-CCHHHHHHHHHHHH
T ss_conf             ---99994-04899999999998


No 49 
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.21  E-value=0.0074  Score=37.42  Aligned_cols=45  Identities=22%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-C--EEEEEECCCCCCCC
Q ss_conf             502202443666678777618997699998289-8--39999669843444
Q gi|254780222|r   72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN-G--FLTVVDNGRGIPVE  119 (686)
Q Consensus        72 ~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d-g--~IsV~ddGrGIPv~  119 (686)
                      ..|+.++.|.+.||+-.+   .+++|.|.+..+ +  .|+|.|||.|+|-+
T Consensus        39 ~~l~~ii~E~ltNa~kHa---~a~~v~v~l~~~~~~~~l~V~DnG~g~~~~   86 (128)
T 3ehg_A           39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEE   86 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCCC
T ss_conf             999999999999999847---996799999987999999999799454345


No 50 
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.95  E-value=0.023  Score=34.05  Aligned_cols=10  Identities=20%  Similarity=0.521  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q ss_conf             6889999999
Q gi|254780222|r  550 HIASLLLTFF  559 (686)
Q Consensus       550 HI~~Lll~ff  559 (686)
                      .++-.+.|++
T Consensus       244 ~l~qvl~NLl  253 (349)
T 3a0r_A          244 RIKQVLINLV  253 (349)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 51 
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=95.14  E-value=0.012  Score=36.01  Aligned_cols=47  Identities=13%  Similarity=0.007  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---CEEEEEECCCCCCCCC
Q ss_conf             02202443666678777618997699998289---8399996698434441
Q gi|254780222|r   73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN---GFLTVVDNGRGIPVEN  120 (686)
Q Consensus        73 GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d---g~IsV~ddGrGIPv~~  120 (686)
                      -|..++..++.||++..- .....|.|.+..+   -.|+|.|+|+|||-+.
T Consensus       112 ~l~~il~nli~NAi~~~~-~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~  161 (192)
T 1ixm_A          112 KLMRKLFHLFDQAVSRES-ENHLTVSLQTDHPDRQLILYLDFHGAFADPSA  161 (192)
T ss_dssp             HHHHHHHHHHHHHBCTTS-CCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCEEEEEEEECCCCCCHHH
T ss_conf             999999999999887427-89866999999679999999997688568899


No 52 
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.05  E-value=0.048  Score=31.84  Aligned_cols=44  Identities=23%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--C-CEEEEEECCCCCCCC
Q ss_conf             0220244366667877761899769999828--9-839999669843444
Q gi|254780222|r   73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDG--N-GFLTVVDNGRGIPVE  119 (686)
Q Consensus        73 GL~~i~~EIldNavDe~~~g~~~~I~V~i~~--d-g~IsV~ddGrGIPv~  119 (686)
                      .|..++.|+|.||+..+   ++..|.|.+..  + -.++|.|||.|+|.+
T Consensus       130 ~l~~il~ell~Na~kh~---~~~~v~i~~~~~~~~~~i~v~Dng~g~~~~  176 (218)
T 3ehh_A          130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEE  176 (218)
T ss_dssp             HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC--
T ss_pred             HHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf             99999999997112114---550589874143203432214798766777


No 53 
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=94.46  E-value=0.11  Score=29.24  Aligned_cols=79  Identities=24%  Similarity=0.431  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCC-------EEEEEECC--C-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             775502202443666678777618997-------69999828--9-8--3999966984344417665787012345452
Q gi|254780222|r   69 TDEKALHHLFSEVIDNAMDEVIAGYAN-------LIEVSLDG--N-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTT  136 (686)
Q Consensus        69 t~~~GL~~i~~EIldNavDe~~~g~~~-------~I~V~i~~--d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~  136 (686)
                      .+..-|.++|.-+|.||++....+...       ...+.+..  + .  .|+|.|||.|||-+..   +.++.|      
T Consensus        44 ~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~---~~iF~p------  114 (160)
T 1r62_A           44 HDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQ---DTLFYP------  114 (160)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------------
T ss_pred             ECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCHHHH---HHHCCC------
T ss_conf             88999999999999999985036896168864102303430235684689997878897798999---972787------


Q ss_pred             EECCCCCCCCCEEEECCCCCHHHHHHHHEE
Q ss_conf             002477777741563144538898762032
Q gi|254780222|r  137 LHAGGKFDNSTYEISGGLHGVGISVVNALS  166 (686)
Q Consensus       137 L~aggnfdd~~yk~sgGlnGvGaklvNalS  166 (686)
                      ..+ +|        .+| .|+|.++|.-+-
T Consensus       115 f~t-~k--------~~G-~GLGL~i~~~iv  134 (160)
T 1r62_A          115 MVS-GR--------EGG-TGLGLSIARNLI  134 (160)
T ss_dssp             -------------------CHHHHHHHHHH
T ss_pred             CEE-CC--------CCC-CCCCHHHHHHHH
T ss_conf             220-48--------899-866199999999


No 54 
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=85.42  E-value=0.37  Score=25.73  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=59.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCC--------C--CCEEEEEECC-CC--EEEEEECCCCCCCCCC------------CCCC
Q ss_conf             5502202443666678777618--------9--9769999828-98--3999966984344417------------6657
Q gi|254780222|r   71 EKALHHLFSEVIDNAMDEVIAG--------Y--ANLIEVSLDG-NG--FLTVVDNGRGIPVENH------------PKFP  125 (686)
Q Consensus        71 ~~GL~~i~~EIldNavDe~~~g--------~--~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h------------~k~~  125 (686)
                      ...|...+-.++.||+|....+        .  ...|.+.... .+  .+++.|||+||+....            +...
T Consensus       104 ~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~~~~~~~~~~~~~~~~~~~  183 (379)
T 1b3q_A          104 VEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAA  183 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf             99999999999877776434786289886403555303799974987999994068776643441258984022232345


Q ss_pred             CCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEEECCCEECC
Q ss_conf             870123454520024777777415631445388987620321----26999941-88389999727945113
Q gi|254780222|r  126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKFSRGIPLSP  192 (686)
Q Consensus       126 ~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f~~g~~~~~  192 (686)
                      +. .++-++-.+...+.-........+| .|+|.++|.-+-+    ...|++.- .|..|+.++=-.....+
T Consensus       184 ~~-~~~~i~~~~f~~~~s~~~~~~~~~G-~GLGL~ivk~ive~hgG~I~V~S~~G~GTtF~i~lP~~~~~~~  253 (379)
T 1b3q_A          184 TL-SDQEILNFLFVPGFSTKEKVSEVSG-RGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAIIC  253 (379)
T ss_dssp             TS-CTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEEEE
T ss_pred             CC-CHHHHHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEEHHHHH
T ss_conf             54-6789977653246443432013799-9614999999999838879999618988899999964133023


No 55 
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, structural genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Probab=70.99  E-value=3.8  Score=18.81  Aligned_cols=50  Identities=16%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCEEEEEECCCCC
Q ss_conf             154677755022024436666787776189----97699998289839999669843
Q gi|254780222|r   64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGY----ANLIEVSLDGNGFLTVVDNGRGI  116 (686)
Q Consensus        64 mYIGst~~~GL~~i~~EIldNavDe~~~g~----~~~I~V~i~~dg~IsV~ddGrGI  116 (686)
                      +|+||++.+.+--  .|++-.|+...++..    ...+.+.|..+| |+|.|+.++-
T Consensus        19 ~YLGSv~V~~~~G--~~vi~~Ai~~l~~~~~~~k~~~V~L~VS~~G-Ikv~D~~~~~   72 (157)
T 3hqc_A           19 LYLTSVETESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQRKL   72 (157)
T ss_dssp             EEEEEEECTTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEETTE
T ss_pred             EEEEEEEECCCCC--HHHHHHHHHHHHHHCCCCCCCEEEEEEECCE-EEEEECCCCC
T ss_conf             9873799179998--8999999999997288999948999996382-9999789885


No 56 
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Probab=43.99  E-value=12  Score=15.30  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEECCCC
Q ss_conf             43269815467775502202443666678777618----99769999828983999966984
Q gi|254780222|r   58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDNGRG  115 (686)
Q Consensus        58 VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g----~~~~I~V~i~~dg~IsV~ddGrG  115 (686)
                      +..=+..|+|++...+..-  .+++..|++..+..    ....+.++|..+ .|.|.|...+
T Consensus         7 ~~~f~v~YLG~~~v~~~~G--~~~v~~ai~~l~~~~~~~~~~~V~l~Vs~~-gv~v~d~~t~   65 (140)
T 3dxe_A            7 VQKFQVYYLGNVPVAKPVG--VDVINGALESVLSSSSREQWTPSHVSVAPA-TLTILHQQTE   65 (140)
T ss_dssp             ---CEEEEEEEEEESCSCC--HHHHHHHHHHHHHTCCGGGCEEEEEEECSS-EEEEEETTTC
T ss_pred             CEEEEEEEEEEEEECCCCC--HHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCC
T ss_conf             3599999989999388788--699999999998635678985599999389-8999967997


No 57 
>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1
Probab=41.99  E-value=1.1  Score=22.47  Aligned_cols=65  Identities=26%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             EEEEEECCCCC-CCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             37997327676-42100101122201221123131445410877632288999998825665433333465525189997
Q gi|254780222|r  464 TELFIVEGDSA-GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT  542 (686)
Q Consensus       464 ~eL~lvEGDSA-~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~~LRYgkIiImT  542 (686)
                      -.+|||||--= ..+-..|    +.++.++-|.-+.            +.+..|               ..++.+||||+
T Consensus        21 ~~viiVEG~~D~~aL~~~G----i~n~va~~Gt~~~------------~~~~~l---------------~~~~~~Vil~~   69 (118)
T 1t6t_1           21 EAVILVEGKNDKKALSKFS----IKNVIDLSGKRYA------------DVVDML---------------EGKWEKVILLF   69 (118)
T ss_dssp             TSEEEESSHHHHHHHHTTT----CCCEEECTTSCHH------------HHHHHH---------------TTTCSEEEECC
T ss_pred             CCEEEECCHHHHHHHHHCC----CCHHHHCCCCCHH------------HHHHHH---------------HHCCCEEEEEE
T ss_conf             9789973899999999816----5232301686559------------999999---------------86489389986


Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             79877146889999999
Q gi|254780222|r  543 DADVDGAHIASLLLTFF  559 (686)
Q Consensus       543 DaD~DGsHI~~Lll~ff  559 (686)
                      |.|.-|.-..-=+...|
T Consensus        70 D~D~aG~~~~~k~~~~L   86 (118)
T 1t6t_1           70 DLDTHGERINQKMKELL   86 (118)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             78888999999999999


No 58 
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=39.98  E-value=15  Score=14.82  Aligned_cols=18  Identities=28%  Similarity=0.444  Sum_probs=10.1

Q ss_pred             EEEEHHH--CCCCCCCCCCC
Q ss_conf             7763456--07644662025
Q gi|254780222|r  372 VFIREPE--FAGQTKTKLVS  389 (686)
Q Consensus       372 v~I~nP~--FesQTKekL~s  389 (686)
                      +-|.||-  +.|.|-+.|..
T Consensus       331 lei~nPG~l~~git~e~l~~  350 (583)
T 3lmm_A          331 LIVRSPGGFPAAITSENVLS  350 (583)
T ss_dssp             EEEEEESCCCTTCCTTSSTT
T ss_pred             EEEECCCCCCCCCCHHHHCC
T ss_conf             99967987878758887258


No 59 
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=36.36  E-value=13  Score=15.06  Aligned_cols=11  Identities=36%  Similarity=0.253  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHH
Q ss_conf             78999999999
Q gi|254780222|r  592 HDEEHKQKILE  602 (686)
Q Consensus       592 ~~e~e~~~~~~  602 (686)
                      |||..+-+.++
T Consensus       477 yTeatLi~~Me  487 (592)
T 1mw9_X          477 FSEASLVKELE  487 (592)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             99899999998


No 60 
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=36.06  E-value=17  Score=14.41  Aligned_cols=50  Identities=20%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCEEEEEECCCCC
Q ss_conf             154677755022024436666787776189----97699998289839999669843
Q gi|254780222|r   64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGY----ANLIEVSLDGNGFLTVVDNGRGI  116 (686)
Q Consensus        64 mYIGst~~~GL~~i~~EIldNavDe~~~g~----~~~I~V~i~~dg~IsV~ddGrGI  116 (686)
                      +|+||++.+.+--  .+++..|++..++..    ...+.++|..+ .|.|.|+-++-
T Consensus         7 ~YLGs~~V~~~~G--~~~i~~Av~~l~~~~~~~k~~~V~l~Vs~~-GIki~d~~~~~   60 (134)
T 1wvh_A            7 LFINSVEMESLTG--PQAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKL   60 (134)
T ss_dssp             EEEEEEEEETCCH--HHHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCS
T ss_pred             EEEEEEEECCCCC--HHHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEECCCCC
T ss_conf             9862599379889--899999999999618899984999999269-68999468884


No 61 
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=32.30  E-value=15  Score=14.72  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.0

Q ss_pred             CCCCCCCCCCCEEEEECCCCC
Q ss_conf             333346552518999779877
Q gi|254780222|r  527 QYREEDLRYEKVIIMTDADVD  547 (686)
Q Consensus       527 ~~~~~~LRYgkIiImTDaD~D  547 (686)
                      +|.+++||.|-++-..|+|.-
T Consensus       207 e~gld~LR~GD~VaI~d~D~~  227 (284)
T 3dcl_A          207 DLGVADLKLGDIVAIQDHDNS  227 (284)
T ss_dssp             GGTSSCCBTTBEEEEEEEECS
T ss_pred             HHCCCCCCCCCEEEEECCCCC
T ss_conf             928773021579999416776


No 62 
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=27.32  E-value=18  Score=14.14  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=15.6

Q ss_pred             EEEEEECCCCCCCCHHHCC--CCCCEEEEEE
Q ss_conf             3799732767642100101--1222012211
Q gi|254780222|r  464 TELFIVEGDSAGGSAKQAR--NRSNQAVLPL  492 (686)
Q Consensus       464 ~eL~lvEGDSA~gsAk~gr--dr~~qgi~PL  492 (686)
                      +.|+||+ |-.+=.=-..|  |++.|.++||
T Consensus       291 ~glmlt~-~gp~viE~N~RfGDPE~q~ll~~  320 (442)
T 3lp8_A          291 AGIIIKK-NEPKLLEYNVRFGDPETQSILPR  320 (442)
T ss_dssp             EEEEEET-TEEEEEEEESSCCTTHHHHHGGG
T ss_pred             EEEEEEC-CCCEEEEEEEEECCCCCEEEECC
T ss_conf             4799968-97169987422079855045303


No 63 
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A 2ztn_A
Probab=25.79  E-value=17  Score=14.38  Aligned_cols=18  Identities=44%  Similarity=0.534  Sum_probs=12.5

Q ss_pred             CCCEEEEEECCEECCHHHH
Q ss_conf             2220122112313144541
Q gi|254780222|r  484 RSNQAVLPLRGKILNVASA  502 (686)
Q Consensus       484 r~~qgi~PLRGKiLNv~~a  502 (686)
                      ...+.+||||||+- +|.+
T Consensus       423 ~~~~~~lp~~gk~s-~w~~  440 (504)
T 3hag_A          423 SKTFFVLPLRGKLS-FWEA  440 (504)
T ss_dssp             TEEEECEEBSSCCE-EEES
T ss_pred             CCEEEEEECCCCCC-HHHC
T ss_conf             82699843378642-4115


No 64 
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=25.64  E-value=23  Score=13.40  Aligned_cols=28  Identities=7%  Similarity=0.146  Sum_probs=15.4

Q ss_pred             HHHHCCCCEEECCC-CCCCHHHHHHHHHHH
Q ss_conf             03432698154677-755022024436666
Q gi|254780222|r   56 EPVRMRPGMYIGGT-DEKALHHLFSEVIDN   84 (686)
Q Consensus        56 E~VrkRP~mYIGst-~~~GL~~i~~EIldN   84 (686)
                      ....++.+.||... |.+| --|+|||+.-
T Consensus        71 k~l~k~~~iiiAtD~DREG-E~I~~~i~~~   99 (633)
T 2gai_A           71 KDLAKKGELLIASDMDREG-EAIAWHIARV   99 (633)
T ss_dssp             HHHHHHSCEEECCCSSHHH-HHHHHHHHHH
T ss_pred             HHHHCCCCEEECCCCCCCH-HHHHHHHHHH
T ss_conf             9985599799958998346-5999999998


No 65 
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=25.63  E-value=25  Score=13.24  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             518999779877146889999999
Q gi|254780222|r  536 EKVIIMTDADVDGAHIASLLLTFF  559 (686)
Q Consensus       536 gkIiImTDaD~DGsHI~~Lll~ff  559 (686)
                      -+|+|++|.|.-|--++.-|...|
T Consensus        51 ~~Iil~~D~D~aG~k~~~~l~~~L   74 (119)
T 2fcj_A           51 YDVYLLADADEAGEKLRRQFRRMF   74 (119)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             869997389779999999999867


No 66 
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=24.36  E-value=8.7  Score=16.33  Aligned_cols=62  Identities=11%  Similarity=0.075  Sum_probs=38.7

Q ss_pred             CCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             88539999984243200122228999998888753057735999516453222455411234315861
Q gi|254780222|r  202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL  269 (686)
Q Consensus       202 k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi  269 (686)
                      +..++|-|.-|+..| |.     .....|+.++|-.||+-++.+...............+.|+-+++|
T Consensus       133 ~~~~~IWFSn~P~~f-Mp-----~e~q~~L~e~reqNp~~~i~LVYsStlLn~~a~~ql~~faken~I  194 (525)
T 3jsz_A          133 NVQTSIWFSIKPELF-MP-----SKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNI  194 (525)
T ss_dssp             SEEEEECCCSSTTCS-SC-----HHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTE
T ss_pred             CCEEEEEEECCHHHH-CC-----HHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCC
T ss_conf             855999973786674-26-----778999999997589983999961132388999999999875693


No 67 
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=24.35  E-value=8.7  Score=16.34  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=12.6

Q ss_pred             EEECCHHHHHHHHHHHHHCCCCC
Q ss_conf             99378999999999877417886
Q gi|254780222|r  589 VYAHDEEHKQKILEEFKKHGKGK  611 (686)
Q Consensus       589 ~y~~~e~e~~~~~~~~~~~~~~k  611 (686)
                      .|..|++|+..|...+..+|...
T Consensus        58 rY~LS~EEf~~W~~av~~hG~~g   80 (95)
T 2jrt_A           58 RYSLSEEEFALWRSAVAAHGEKA   80 (95)
T ss_dssp             HTTCCHHHHHHHHHHTTTCCTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             96888999999999999975889


No 68 
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=22.78  E-value=28  Score=12.88  Aligned_cols=20  Identities=5%  Similarity=-0.021  Sum_probs=9.8

Q ss_pred             HHHHHHCCCCH--HHHHHHHHH
Q ss_conf             99998807981--689999997
Q gi|254780222|r  657 DSINKLMGTKA--DERFKFIQE  676 (686)
Q Consensus       657 ~~f~~lmG~~~--~~RK~wi~~  676 (686)
                      ..|..|+|.+.  +.|+.|..+
T Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~  645 (666)
T 2zxr_A          624 ARLKALVHRRLLFAYERRHPGL  645 (666)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9999987636546666303202


No 69 
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=21.29  E-value=30  Score=12.68  Aligned_cols=47  Identities=11%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEC
Q ss_conf             815467775502202443666678777618----99769999828983999966
Q gi|254780222|r   63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDN  112 (686)
Q Consensus        63 ~mYIGst~~~GL~~i~~EIldNavDe~~~g----~~~~I~V~i~~dg~IsV~dd  112 (686)
                      ..|+|++....+- - .+++.+|++..+..    ....+.+.|..+ .|.|.++
T Consensus        20 vkYLGs~~v~~~~-g-~~~v~~ai~~l~~~~~~~~~~~v~l~Vs~~-gv~i~~~   70 (136)
T 1wgu_A           20 VQYLGMLPVDRPV-G-MDTLNSAIENLMTSSSKEDWPSVNMNVADA-TVTVISE   70 (136)
T ss_dssp             EEEEEEEECSCSS-C-SHHHHHHHHHHHHSSCTTTSCEEEEEEETT-EEEEECS
T ss_pred             EEEEEEEECCCCC-C-HHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEEC
T ss_conf             9998889908878-8-579999999999647688981799999857-3899751


No 70 
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} SCOP: d.104.1.4
Probab=21.12  E-value=18  Score=14.12  Aligned_cols=21  Identities=14%  Similarity=-0.054  Sum_probs=9.3

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99987630188332223322223
Q gi|254780222|r  341 GIKKYAELTQNKRAISIISDDLM  363 (686)
Q Consensus       341 ~i~~~~~~~~~kk~~~i~~~dIk  363 (686)
                      .++++....  ..++.-.++|+-
T Consensus        94 i~~e~L~~~--g~~~~r~GDDLy  114 (190)
T 2ddz_A           94 RLVELLWNY--GIEASRRGDDIY  114 (190)
T ss_dssp             HHHHHHHTT--TCCEEEETTEEE
T ss_pred             HHHHHHHHC--CCCEEECCCEEE
T ss_conf             999999975--986176278578


Done!