Query gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 686 No_of_seqs 238 out of 3153 Neff 6.9 Searched_HMMs 23785 Date Tue May 24 01:28:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780222.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ei1_A DNA gyrase B, GYRB; ATP 100.0 0 0 897.1 28.5 386 41-438 1-390 (391) 2 1kij_A DNA gyrase subunit B; t 100.0 0 0 876.2 28.4 384 43-438 2-389 (390) 3 1s16_A Topoisomerase IV subuni 100.0 0 0 867.5 29.6 385 40-441 1-389 (390) 4 1pvg_A DNA topoisomerase II; G 100.0 0 0 795.8 18.7 366 41-429 9-412 (418) 5 1zxm_A TOPO IIA ATPase, DNA to 100.0 0 0 792.2 21.0 357 49-430 6-391 (400) 6 3cwv_A DNA gyrase, B subunit, 100.0 0 0 733.9 24.4 347 51-426 6-362 (369) 7 3nuh_B DNA gyrase subunit B; t 100.0 0 0 723.5 17.5 250 432-685 1-419 (420) 8 2xkj_E Topoisomerase IV; type 100.0 0 0 681.5 20.3 255 419-682 1-256 (767) 9 3k9f_C DNA topoisomerase 4 sub 100.0 0 0 669.8 19.9 238 439-684 23-265 (268) 10 3m4i_A DNA gyrase subunit B; G 100.0 0 0 639.1 17.2 230 452-685 8-241 (242) 11 3l4j_A DNA topoisomerase 2; to 100.0 0 0 606.8 18.7 225 445-677 2-237 (757) 12 2xcs_B DNA gyrase subunit B, D 100.0 0 0 552.2 14.7 196 445-680 2-197 (692) 13 3fv5_A DNA topoisomerase 4 sub 100.0 0 0 525.3 15.9 200 54-265 1-201 (201) 14 3g7e_A DNA gyrase subunit B; i 100.0 0 0 516.1 15.9 195 54-250 1-196 (203) 15 2q2e_B Type 2 DNA topoisomeras 100.0 0 0 590.5 -42.4 573 44-671 8-611 (621) 16 3g75_A DNA gyrase subunit B; a 100.0 0 0 455.0 12.9 184 54-266 1-184 (184) 17 1mu5_A Type II DNA topoisomera 99.7 4.2E-14 1.8E-18 114.6 22.6 309 51-389 10-433 (471) 18 3h4l_A DNA mismatch repair pro 99.6 6.5E-12 2.7E-16 99.6 22.7 160 71-247 23-194 (367) 19 1h7s_A PMS1 protein homolog 2; 99.4 3.2E-12 1.3E-16 101.7 12.2 182 45-248 11-205 (365) 20 3na3_A DNA mismatch repair pro 99.4 4.5E-11 1.9E-15 93.8 17.1 179 49-250 9-200 (348) 21 2zbk_B Type 2 DNA topoisomeras 99.0 4.7E-10 2E-14 86.8 6.1 163 68-247 26-207 (530) 22 1b63_A MUTL; DNA mismatch repa 99.0 9E-09 3.8E-13 78.0 11.8 161 71-249 22-195 (333) 23 2cg9_A ATP-dependent molecular 98.2 4.6E-05 1.9E-09 52.6 12.6 157 78-249 31-211 (677) 24 2o1u_A Endoplasmin; GRP94, HSP 98.1 3.1E-05 1.3E-09 53.8 9.9 158 78-249 50-234 (666) 25 2wer_A ATP-dependent molecular 98.1 6.9E-05 2.9E-09 51.3 11.2 159 77-249 30-211 (220) 26 1uyl_A HSP 86, heat shock prot 98.0 6.2E-05 2.6E-09 51.7 10.2 183 43-249 21-224 (236) 27 1yc1_A HSP 86, heat shock prot 97.9 0.00013 5.6E-09 49.4 10.4 160 76-249 71-252 (264) 28 1y4s_A Chaperone protein HTPG; 97.8 0.00051 2.1E-08 45.4 11.3 155 78-248 32-213 (559) 29 2gqp_A Endoplasmin; GRP94, HSP 97.7 0.0012 5.2E-08 42.7 12.9 160 76-249 35-221 (236) 30 3peh_A Endoplasmin homolog; st 97.7 0.0005 2.1E-08 45.5 10.8 159 78-250 51-233 (281) 31 2ioq_A Chaperone protein HTPG; 97.7 0.00036 1.5E-08 46.5 9.4 154 78-247 32-212 (624) 32 1gkz_A [3-methyl-2-oxobutanoat 97.6 3.7E-05 1.5E-09 53.2 4.0 94 71-169 236-350 (388) 33 3ied_A Heat shock protein; HSP 97.6 0.00054 2.3E-08 45.2 9.8 129 96-235 120-260 (272) 34 2btz_A Pyruvate dehydrogenase 97.6 1.7E-05 7.3E-10 55.5 2.2 87 71-169 229-327 (394) 35 2q8g_A [pyruvate dehydrogenase 97.6 2.9E-05 1.2E-09 53.9 2.9 90 71-170 241-341 (407) 36 2ior_A Chaperone protein HTPG; 97.5 0.00024 1E-08 47.6 6.4 176 43-247 28-232 (235) 37 1qy5_A Endoplasmin; GRP94, NEC 97.5 0.00064 2.7E-08 44.7 8.5 160 76-249 31-217 (269) 38 1th8_A Anti-sigma F factor; SP 97.3 0.00073 3.1E-08 44.3 7.5 91 74-183 40-135 (145) 39 2e0a_A Pyruvate dehydrogenase 97.3 0.00011 4.5E-09 50.1 2.6 89 71-169 228-327 (394) 40 3jz3_A Sensor protein QSEC; he 97.3 0.00026 1.1E-08 47.3 4.5 94 76-186 116-216 (222) 41 1y8o_A [pyruvate dehydrogenase 97.2 8.7E-05 3.7E-09 50.7 1.8 89 71-169 251-351 (419) 42 3a0y_A Sensor protein; ATP-LID 97.1 0.0012 4.8E-08 43.0 6.8 95 69-184 43-145 (152) 43 1ysr_A Sensor-type histidine k 97.0 0.00048 2E-08 45.6 4.2 79 70-167 43-124 (150) 44 1bxd_A ENVZ(290-450), protein 96.9 0.0018 7.6E-08 41.6 5.9 98 69-185 43-148 (161) 45 3ke6_A Protein RV1364C/MT1410; 96.8 0.0053 2.2E-07 38.4 8.0 29 93-121 119-148 (399) 46 1id0_A PHOQ histidine kinase; 96.7 0.0019 7.9E-08 41.5 4.8 96 69-185 40-143 (152) 47 3d36_A Sporulation kinase B; G 96.6 0.00063 2.7E-08 44.8 1.7 95 70-184 120-222 (244) 48 2c2a_A Sensor histidine kinase 96.5 0.0021 8.9E-08 41.2 3.9 86 70-168 135-224 (258) 49 3ehg_A Sensor kinase (YOCF pro 96.2 0.0074 3.1E-07 37.4 5.5 45 72-119 39-86 (128) 50 3a0r_A Sensor protein; four he 95.9 0.023 9.6E-07 34.1 7.0 10 550-559 244-253 (349) 51 1ixm_A SPO0B, protein (sporula 95.1 0.012 5E-07 36.0 3.1 47 73-120 112-161 (192) 52 3ehh_A Sensor kinase (YOCF pro 95.1 0.048 2E-06 31.8 6.0 44 73-119 130-176 (218) 53 1r62_A Nitrogen regulation pro 94.5 0.11 4.8E-06 29.2 6.8 79 69-166 44-134 (160) 54 1b3q_A Protein (chemotaxis pro 85.4 0.37 1.6E-05 25.7 2.3 120 71-192 104-253 (379) 55 3hqc_A Tensin-like C1 domain-c 71.0 3.8 0.00016 18.8 3.8 50 64-116 19-72 (157) 56 3dxe_A Amyloid beta A4 protein 44.0 12 0.00052 15.3 2.6 55 58-115 7-65 (140) 57 1t6t_1 Putative protein; struc 42.0 1.1 4.7E-05 22.5 -3.0 65 464-559 21-86 (118) 58 3lmm_A Uncharacterized protein 40.0 15 0.00061 14.8 4.9 18 372-389 331-350 (583) 59 1mw9_X DNA topoisomerase I; de 36.4 13 0.00056 15.1 1.8 11 592-602 477-487 (592) 60 1wvh_A Tensin, tensin1; beta s 36.1 17 0.0007 14.4 4.5 50 64-116 7-60 (134) 61 3dcl_A TM1086; SAD, structural 32.3 15 0.00063 14.7 1.5 21 527-547 207-227 (284) 62 3lp8_A Phosphoribosylamine-gly 27.3 18 0.00077 14.1 1.2 28 464-492 291-320 (442) 63 3hag_A Capsid protein; jelly-r 25.8 17 0.00071 14.4 0.8 18 484-502 423-440 (504) 64 2gai_A DNA topoisomerase I; zi 25.6 23 0.00098 13.4 1.5 28 56-84 71-99 (633) 65 2fcj_A Small toprim domain pro 25.6 25 0.001 13.2 1.6 24 536-559 51-74 (119) 66 3jsz_A LGT1, putative uncharac 24.4 8.7 0.00037 16.3 -0.9 62 202-269 133-194 (525) 67 2jrt_A Uncharacterized protein 24.3 8.7 0.00037 16.3 -0.9 23 589-611 58-80 (95) 68 2zxr_A Single-stranded DNA spe 22.8 28 0.0012 12.9 2.4 20 657-676 624-645 (666) 69 1wgu_A APBB2, amyloid beta (A4 21.3 30 0.0012 12.7 2.9 47 63-112 20-70 (136) 70 2ddz_A 190AA long hypothetical 21.1 18 0.00077 14.1 0.2 21 341-363 94-114 (190) No 1 >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=897.12 Aligned_cols=386 Identities=38% Similarity=0.656 Sum_probs=363.1 Q ss_pred CCCCCHHHEEECCCCHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC Q ss_conf 1236975602311210343269815467775-502202443666678777618997699998289839999669843444 Q gi|254780222|r 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 (686) Q Consensus 41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~-~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~ 119 (686) +++|||++||+|+||||||+|||||||||+. +|||||||||||||+||++||||++|+|+|++||+|||+||||||||+ T Consensus 1 ~~~~d~~~i~~L~~lE~Vr~RP~mYiGs~~~~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dgsisV~ddGrGIPv~ 80 (391) T 1ei1_A 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG 80 (391) T ss_dssp CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS T ss_pred CCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCC T ss_conf 99789777846035227762998876468988722068888888432352149986799999279829999799867677 Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC Q ss_conf 17665787012345452002477777741563144538898762032126999941883899997279451131121676 Q gi|254780222|r 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 (686) Q Consensus 120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~ 199 (686) +||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|+.|+|+|++||+..++++++++ T Consensus 81 ~h~~-~~~~~~Elif~~L~tg~nfd~~~~~~sgG~nGvGakl~NalS~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~ 159 (391) T 1ei1_A 81 IHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 159 (391) T ss_dssp BCTT-TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC T ss_pred CCCC-CCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEEECCEECCCCEEECCC T ss_conf 7666-685100899999713677799874331688765427999961555999996998999998099397884050575 Q ss_pred CCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCC Q ss_conf 77885399999842432001222289999988887530577359995164532224554112343158612221002467 Q gi|254780222|r 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 (686) Q Consensus 200 ~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~ 279 (686) +++||+|+|+||+++|+....++.+.|.+|++++|||+|||+|.|++++. +....|+|++||++|+++++.. T Consensus 160 -~~~gT~I~F~PD~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~i~~~d~~~-------~~~~~~~~~~gl~~~~~~l~~~ 231 (391) T 1ei1_A 160 -EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRD-------GKEDHFHYEGGIKAFVEYLNKN 231 (391) T ss_dssp -SCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------CCEEEECCCSHHHHHHHHHHHT T ss_pred -CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC-------CCEEEEECCCCHHHHHHHHCCC T ss_conf -78975899997978817865566999999999985508997799996047-------8268887076499999986258 Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC--CCCCCC Q ss_conf 76667752033332148015589998541467774-278883000655752413046789999998763018--833222 Q gi|254780222|r 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 (686) Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~--~kk~~~ 356 (686) ..++++.++....+.+. +.|+||++|++++.+ ++||||+|+|++|||||+||+++|+++|++|+++.+ ++++.+ T Consensus 232 ~~~~~~~~~~~~~~~~~---~~veva~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~l~~~i~~~~~k~~~~k~~~~~ 308 (391) T 1ei1_A 232 KTPIHPNIFYFSTEKDG---IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 308 (391) T ss_dssp SCBSSSCCEEEEEEETT---EEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCC T ss_pred CCCCCCCCEEEEEEECC---EEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 87679976899976578---289999984488836899986322489997979999999999999998775440123456 Q ss_pred CCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33222236426999977634560764466202523200001210158899977401356889999999999654544334 Q gi|254780222|r 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 (686) Q Consensus 357 i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k 436 (686) ++++||+++|++||+|+|+||+|+||||++|+||++++++++.+++.|..||++||..++.|++++++++++|++|+++| T Consensus 309 ~~~~~Ik~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~i~~a~ar~~a~kar 388 (391) T 1ei1_A 309 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 388 (391) T ss_dssp CCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88889970949999998589967782017636974787889999999999999797999999999999999999998877 Q ss_pred HH Q ss_conf 44 Q gi|254780222|r 437 EV 438 (686) Q Consensus 437 ~~ 438 (686) ++ T Consensus 389 el 390 (391) T 1ei1_A 389 EM 390 (391) T ss_dssp TT T ss_pred CC T ss_conf 04 No 2 >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=876.23 Aligned_cols=384 Identities=39% Similarity=0.625 Sum_probs=357.8 Q ss_pred CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCC Q ss_conf 36975602311210343269815467775502202443666678777618997699998289839999669843444176 Q gi|254780222|r 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 (686) Q Consensus 43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~ 122 (686) .|++++||+|+||||||+|||||||||+++|||||||||||||+||++||||++|+|+|++||+|||+||||||||++|| T Consensus 2 ~y~~~~i~~L~~le~Vr~RP~mYiGst~~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg~isV~ddGrGIPv~~h~ 81 (390) T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP 81 (390) T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET T ss_pred CCCHHHCEECCCCHHHHCCCCCEECCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEECCCCC T ss_conf 62768794514611765399626558998722178876668566674369996699999699859999888726647866 Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCC-C Q ss_conf 657870123454520024777777415631445388987620321269999418838999972794511311216767-7 Q gi|254780222|r 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 (686) Q Consensus 123 k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~-~ 201 (686) + +++|+||||||+||||||||+++||+||||||||||||||||++|+|+|+|+++.|+|+|++|++..+++.+..++ . T Consensus 82 ~-~~~~~~e~i~~~L~tg~nfd~~~~k~sgG~nGvGa~l~NalS~~f~v~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (390) T 1kij_A 82 E-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRG 160 (390) T ss_dssp T-TTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGG T ss_pred C-CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEEEEEECCEEEEEEEECCCCCCCCEECCCCCCC T ss_conf 7-797101999989845676578875302675764427652325203899980433799998488365772021667889 Q ss_pred CCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCC Q ss_conf 88539999984243200122228999998888753057735999516453222455411234315861222100246776 Q gi|254780222|r 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 (686) Q Consensus 202 k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~ 281 (686) ++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++. .....|++++|+.+|+.++..+.. T Consensus 161 ~~gT~I~F~PD~~iF~~-~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 232 (390) T 1kij_A 161 KTGTRVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVAGLKLVFQDRQH-------GKEEVFLDKGGVASFAKALAEGED 232 (390) T ss_dssp CCEEEEEEEECHHHHTT-CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGG-------TEEEEECCTTHHHHHHHHHTTTSC T ss_pred CCEEEEEEEECHHHHCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-------CCEEEEECCCCHHHHHHHHCCCCC T ss_conf 98079999958687456-6333899988889887533884675101678-------802322227626777675304776 Q ss_pred CCCCCCEEEEEEECCCEEEEEEEEEEECCCC-CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC--CCCCCCCC Q ss_conf 6677520333321480155899985414677-74278883000655752413046789999998763018--83322233 Q gi|254780222|r 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 (686) Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~veval~~~~~~-~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~--~kk~~~i~ 358 (686) ++++.++....... .+.++++++|++++ ++++||||+|+|++|||||+||+++|+++|++|+++.+ ++++.+++ T Consensus 233 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~i~k~i~~~~~k~~~~k~~~~~i~ 309 (390) T 1kij_A 233 LLYEKPFLIRGTHG---EVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPT 309 (390) T ss_dssp BSCSSCEEEEEEET---TEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCC T ss_pred CCCCCCCEECCCCC---EEEEEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 13442101023332---035788630379876578988635887999746887999999999999987264344456788 Q ss_pred CCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22223642699997763456076446620252320000121015889997740135688999999999965454433444 Q gi|254780222|r 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 (686) Q Consensus 359 ~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k~~ 438 (686) ++|||++|++||+|+|+||+|+||||++|+||++++++++.++++|..||++||.+++.|++++++++++|++++++|++ T Consensus 310 ~~dIk~~l~~~Is~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~Ivek~l~~a~aR~~akk~re~ 389 (390) T 1kij_A 310 GDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390) T ss_dssp TTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88997291999999878997268212851685378889999999999999979799999999999999999999852324 No 3 >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=867.45 Aligned_cols=385 Identities=37% Similarity=0.621 Sum_probs=351.5 Q ss_pred CCCCCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC Q ss_conf 31236975602311210343269815467775502202443666678777618997699998289839999669843444 Q gi|254780222|r 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 (686) Q Consensus 40 ~~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~ 119 (686) ++++|+|++||+|+||||||+||||||||| ||||||||||||||||+++|||++|+|+|++||+|||+||||||||+ T Consensus 1 m~~~y~~~~i~~L~~lE~Vr~RP~mYiGs~---gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~ 77 (390) T 1s16_A 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVD 77 (390) T ss_dssp ---CCSGGGCEECCTTHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCS T ss_pred CCCCCCHHHCEEECCCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEEC T ss_conf 987638645846145237653896678999---85207869987465067429996799999189869999889950004 Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC Q ss_conf 17665787012345452002477777741563144538898762032126999941883899997279451131121676 Q gi|254780222|r 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 (686) Q Consensus 120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~ 199 (686) +||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..+++.++.+ T Consensus 78 ~h~~-~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~ 156 (390) T 1s16_A 78 IHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 (390) T ss_dssp BCTT-TCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEC T ss_pred CCCC-CCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECC T ss_conf 5656-687713888987603676788774230675762458989624107999986467689996399745672176145 Q ss_pred C-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC Q ss_conf 7-788539999984243200122228999998888753057735999516453222455411234315861222100246 Q gi|254780222|r 200 R-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 (686) Q Consensus 200 ~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~ 278 (686) . .++||+|+|+||+++|++ ..|+.+.|..|++++|||+||+++.+.+++. .....|+|++|+.+|+.+++. T Consensus 157 ~~~~~gT~ItF~PD~~~F~~-~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~-------~~~~~~~~~~Gi~~y~~~~~~ 228 (390) T 1s16_A 157 GKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVN 228 (390) T ss_dssp CTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECCSSCHHHHHHHHHT T ss_pred CCCCCCEEEEEEECHHHHCC-CCCCHHHHHHHHHHHEEECCCCEEEEEECCC-------CEEEEEEECCCHHHHHHHHHC T ss_conf 77899689999948687044-2326999999998752886895578875168-------706777604867677888725 Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCC--CCEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC-CCCCC Q ss_conf 7766677520333321480155899985414677--74278883000655752413046789999998763018-83322 Q gi|254780222|r 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI 355 (686) Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~--~~~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~-~kk~~ 355 (686) .....+..++...... +.+.++|+++|+++. +.++||||+|+|++|||||+||++||+++|++|++.++ ++++. T Consensus 229 ~~~~~~~~~~~~~~~~---~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk~~ 305 (390) T 1s16_A 229 GLPTLPEKPFIGNFAG---DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 (390) T ss_dssp TSCCEEEEEEEEEEEC---SSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTC T ss_pred CCCCCCCCCEEEEECC---CCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 8986556635877606---7725999998614344303444434376689947523079999999999999717444567 Q ss_pred CCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23322223642699997763456076446620252320000121015889997740135688999999999965454433 Q gi|254780222|r 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 (686) Q Consensus 356 ~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~ 435 (686) +++++||+++|++||+|+|+||+|+||||++|+||+++++|++.++++|..||++||..++.|+++++.+|++|++ ++ T Consensus 306 ~i~~~di~~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~~--~~ 383 (390) T 1s16_A 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AA 383 (390) T ss_dssp CCCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--HC T ss_pred CCCHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HH T ss_conf 4785465377699999984799607711173069768888999999999999997979999999999999999999--76 Q ss_pred HHHHHH Q ss_conf 444221 Q gi|254780222|r 436 REVNRK 441 (686) Q Consensus 436 k~~~rk 441 (686) |++.|| T Consensus 384 k~~~Rk 389 (390) T 1s16_A 384 KKVVRK 389 (390) T ss_dssp ------ T ss_pred HHHHCC T ss_conf 787537 No 4 >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Probab=100.00 E-value=0 Score=795.79 Aligned_cols=366 Identities=23% Similarity=0.329 Sum_probs=311.9 Q ss_pred CCCCCHHHEEECCCCHHHHCCCCEEECCCCCC-----------------------CHHHHHHHHHHHHHHHHHCCC-CCE Q ss_conf 12369756023112103432698154677755-----------------------022024436666787776189-976 Q gi|254780222|r 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEK-----------------------ALHHLFSEVIDNAMDEVIAGY-ANL 96 (686) Q Consensus 41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~~-----------------------GL~~i~~EIldNavDe~~~g~-~~~ 96 (686) +..|.+++||+|+||||||+|||||||||+.. |||||||||||||+||++||+ |++ T Consensus 9 ~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~~ 88 (418) T 1pvg_A 9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 88 (418) T ss_dssp ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE T ss_pred CCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCCE T ss_conf 88765651404663108653999712467889832688633554000022434660024656899980247651688877 Q ss_pred EEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE- Q ss_conf 999982-898399996698434441766578701234545200247777774156314453889876203212699994- Q gi|254780222|r 97 IEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA- 174 (686) Q Consensus 97 I~V~i~-~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~- 174 (686) |+|+|+ +||+|||+|||||||||+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|||. T Consensus 89 I~V~i~~~dgsisV~DnGrGIPv~~h~~-~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~ 167 (418) T 1pvg_A 89 IDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD 167 (418) T ss_dssp EEEEEETTTTEEEEEEESSCCCCSBCTT-TCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE T ss_conf 9999967998899996990146104366-786411578877403554457753040787552640227663565317676 Q ss_pred -CCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCE---EEEECCC Q ss_conf -18838999972794511311216767-788539999984243200122228999998888753057735---9995164 Q gi|254780222|r 175 -RQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK---TCWSCDK 249 (686) Q Consensus 175 -r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~---i~~~~~~ 249 (686) |+|+.|.|+|++||+..++++++.++ .++||+|+|+||++||++ ..|+.+++..|++++|+|+++++ +.++++ T Consensus 168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~-~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~- 245 (418) T 1pvg_A 168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK- 245 (418) T ss_dssp TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE- T ss_pred CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC- T ss_conf 1498799999946841134420101356899539999838565066-11116899999999998718750899971687- Q ss_pred CCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCCC-------CCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEEC Q ss_conf 53222455411234315861222100246776667-------75203333214801558999854146777427888300 Q gi|254780222|r 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS-------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322 (686) Q Consensus 250 ~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I 322 (686) ....++|++|+..|+..+.....+.. .++.....+. ....||+|++|++..++++||||+| T Consensus 246 ---------~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~---~~~~~eva~~~~~~~~~~~SfvN~I 313 (418) T 1pvg_A 246 ---------SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVAFAVSDISFQQISFVNSI 313 (418) T ss_dssp ---------ECCCCSHHHHHHTTTTTC-----------------CCSCEEEE---EETTEEEEEEECSSSCEEEEEETTE T ss_pred ---------CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEE---CCCEEEEEEEECCCCEEEEEEECCC T ss_conf ---------1466203675464024433330002566666567630687640---3760899998615650588735461 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHH Q ss_conf 06557524130467899999987630188332223322223642699997763456076446620252320000121015 Q gi|254780222|r 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 (686) Q Consensus 323 ~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~ 402 (686) +|++|||||+||++||+++|++|++ +++..+++++|||++|++||||+|+||+|+||||++|+|+..++++.+.+.+ T Consensus 314 ~T~~GGTHv~g~~~al~~~i~~~~~---k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~ 390 (418) T 1pvg_A 314 ATTMGGTHVNYITDQIVKKISEILK---KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 390 (418) T ss_dssp ECTTCBHHHHHHHHHHHHHHHHHHC---C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 4799968079999999999998864---3034678999996092999999848984897202762595110578754629 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889997740135688999999999965 Q gi|254780222|r 403 PFDHYLVQNPIEATKLLEWVIERSEER 429 (686) Q Consensus 403 ~l~~~l~~n~~~a~~I~~~~~~~a~~r 429 (686) +|.+.+.+.. |++++++.++++ T Consensus 391 ~~l~ki~k~~-----i~~~i~~~a~~k 412 (418) T 1pvg_A 391 EYINKIMKTD-----LATRMFEIADAN 412 (418) T ss_dssp HHHHHHTTSH-----HHHHHHHHHHC- T ss_pred HHHHHHHHHH-----HHHHHHHHHHHH T ss_conf 9999988779-----999999999866 No 5 >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Probab=100.00 E-value=0 Score=792.19 Aligned_cols=357 Identities=20% Similarity=0.298 Sum_probs=309.5 Q ss_pred EEECCCCHHHHCCCCEEECCCC----------------------CCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCC- Q ss_conf 0231121034326981546777----------------------5502202443666678777618-997699998289- Q gi|254780222|r 49 IRILEGLEPVRMRPGMYIGGTD----------------------EKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDGN- 104 (686) Q Consensus 49 i~~L~glE~VrkRP~mYIGst~----------------------~~GL~~i~~EIldNavDe~~~g-~~~~I~V~i~~d- 104 (686) +|+|++|||||+|||||||||+ .+|||||||||||||+||++|| +|+.|+|+|+.| T Consensus 6 y~~l~~lEhVr~RPgMYIGst~~~~~~~~~~~~~~~~~~~~~~~~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~ 85 (400) T 1zxm_A 6 YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPEN 85 (400) T ss_dssp SEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT T ss_pred CCCCCHHHHHHCCCCCEECCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCC T ss_conf 27577577986399970277776765304542766401201226870058998999965548865579847999997799 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEEC--CCEEEEE Q ss_conf 83999966984344417665787012345452002477777741563144538898762032126999941--8838999 Q gi|254780222|r 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQ 182 (686) Q Consensus 105 g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r--~gk~y~q 182 (686) |+|||+||||||||++||+ +++|+||+|||+||||||||+++||+||||||||||||||||++|+|++++ .++.|.| T Consensus 86 ~sitV~DnGrGIPv~~h~~-~~~~~~e~i~t~Lhaggkfd~~~yk~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q 164 (400) T 1zxm_A 86 NLISIWNNGKGIPVVEHKV-EKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQ 164 (400) T ss_dssp TEEEEEEESSCCCCSEETT-TTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEE T ss_pred CEEEEEECCCCCCEEECCC-CCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEE T ss_conf 9899998996532002156-673210246778413156689862363464452525551103411455663023056775 Q ss_pred EEECCCEECCCEECCCCCCCCCEEEEEEECHHHEECCCCCCHH---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 9727945113112167677885399999842432001222289---9999888875305773599951645322245541 Q gi|254780222|r 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA---RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 (686) Q Consensus 183 ~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~---~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~ 259 (686) .|.+||...+++++..+++++||+|+|+||+++|++ ..|+.+ .+.+|++++|+|++++++.+++++.. T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~GT~I~F~PD~~iF~~-~~~~~d~~~~l~~r~~~la~l~~~~~v~~~~~~~~-------- 235 (400) T 1zxm_A 165 TWMDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKM-QSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP-------- 235 (400) T ss_dssp EEETTTTEECCCEEEECCSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-------- T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE-EEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------- T ss_conf 102356645544455778999579999857440144-55158999998877898627777418981576565-------- Q ss_pred EEEEEECCCCHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCHHHHHH Q ss_conf 12343158612221002467766677520333321480155899985414677742788830006557524130467899 Q gi|254780222|r 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 (686) Q Consensus 260 ~~~f~~~~Gi~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ai~ 339 (686) ..|+.+|++.+..+.......++....+.. ...||+|++|++++++++||||+|+|++|||||+||++||+ T Consensus 236 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~eva~~~~~~~~~~iSfvN~I~T~~GGTHv~g~~~al~ 306 (400) T 1zxm_A 236 ------VKGFRSYVDMYLKDKLDETGNSLKVIHEQV---NHRWEVCLTMSEKGFQQISFVNSIATSKGGRHVDYVADQIV 306 (400) T ss_dssp ------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEE---ETTEEEEEEECSSSCEEEEEETTEECTTEEHHHHHHHHHHH T ss_pred ------CCCCEEEEEEECCCCCCCCCCCEEEEEEEC---CCEEEEEEEECCCCCCCCEEECCEECCCCCCCCCHHHHHHH T ss_conf ------667205224204332112476247876506---85299999864766521100034006899776436888899 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99998763018833222332222364269999776345607644662025232000012101588999774013568899 Q gi|254780222|r 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 (686) Q Consensus 340 k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~ 419 (686) ++|++|+++++ +++.+++++|||++|++||||+|+||+|+||||++|+||++++++++.++++|.+++.+.+ |+ T Consensus 307 ~~i~~~~~~~~-k~~~~i~~~Diregl~~visv~i~~PqFegQTK~kL~s~~~~~~~~~~l~~~fi~~~~~~~-----i~ 380 (400) T 1zxm_A 307 TKLVDVVKKKN-KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIGCG-----IV 380 (400) T ss_dssp HHHHHHHTTCC-----CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTTC-------- T ss_pred HHHHHHHHHHC-CCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HH T ss_conf 87777887625-4668789999974979999998389945782107714863125143136899999988879-----99 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999654 Q gi|254780222|r 420 EWVIERSEERL 430 (686) Q Consensus 420 ~~~~~~a~~r~ 430 (686) ++++..++++. T Consensus 381 e~l~~~~~~k~ 391 (400) T 1zxm_A 381 ESILNWVKFKA 391 (400) T ss_dssp ----------- T ss_pred HHHHHHHHHHH T ss_conf 99999999758 No 6 >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622} Probab=100.00 E-value=0 Score=733.92 Aligned_cols=347 Identities=24% Similarity=0.332 Sum_probs=313.3 Q ss_pred ECCC--CHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCE Q ss_conf 3112--10343269815467775502202443666678777618997699998289839999669843444176657870 Q gi|254780222|r 51 ILEG--LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 (686) Q Consensus 51 ~L~g--lE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~ 128 (686) -|+| |||||||||||||||+++|||||+||||||||||+++|||++|+|+|++||+|||+||||||||++|+ T Consensus 6 ~~~~~~lE~VrkRPgMYiGst~~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg~IsV~dnGrGIPv~~~~------ 79 (369) T 3cwv_A 6 HLPGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENLV------ 79 (369) T ss_dssp ---CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCHHHHH------ T ss_pred CCCCCCCCCHHCCCCCEECCCCCCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCEEEEEE------ T ss_conf 37887301000599874278999865589988865322076448887799999999969999289995220778------ Q ss_pred EEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC-----CCCC Q ss_conf 12345452002477777741563144538898762032126999941883899997279451131121676-----7788 Q gi|254780222|r 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKR 203 (686) Q Consensus 129 ~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~-----~~k~ 203 (686) +||||+||+++.|+++||+||+| +||||||++|+|+|+|+++.|+|+|++|++..+.+.+... +.++ T Consensus 80 -------~l~~g~~f~~~~~~~~gG~~Gg~-svvNalS~~~~Vev~r~~~~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~ 151 (369) T 3cwv_A 80 -------RVATGAGFLGRPPGDGWGWDSML-VVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER 151 (369) T ss_dssp -------HHHTTTTGGGSSCCCSTTTTSSH-HHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSE T ss_pred -------EEEECCCCCCCCCCCCCCCCCEE-EEEEEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCCCC T ss_conf -------87410233687776653466539-9999982089999997997999988857254788351440352676689 Q ss_pred CEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCC Q ss_conf 53999998424320012222899999888875305773599951645322245541123431586122210024677666 Q gi|254780222|r 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 (686) Q Consensus 204 GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~~~~~ 283 (686) ||+|+|+||+++|++ ..|+.+.+..|++++|||++|+++.+.+++. .+...|++++|+.+|+++++.+..++ T Consensus 152 gT~i~F~pD~~iF~~-~~~~~~~i~~~lr~~a~l~~gl~i~l~~~~~-------~~~~~~~~~~g~~~fv~~l~~~~~~l 223 (369) T 3cwv_A 152 GVRVHFVPDATIFEV-LAFDRARLSRRCNELAALAPGLRVSFADLQR-------GERTLWHLPGGVAQWAHVLTEARPQL 223 (369) T ss_dssp EEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEEECTTHHHHHHHHHHTTSCBS T ss_pred CCEEEEECCCCCCCC-EEECHHHHHHHHHHHHHCCCCCCCEEEEECC-------CCEEEEEECCCHHHHHHHHHCCCCCC T ss_conf 978999666355442-2652788864420044306996000258407-------94468973574788999875146623 Q ss_pred CCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 7752033332148015589998541467774-278883000655752413046789999998763018833222332222 Q gi|254780222|r 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362 (686) Q Consensus 284 ~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~~kk~~~i~~~dI 362 (686) ++.++.+..+.. ...||||++|++++.+ ++||||+|+|++|||||+||++||+++|++|++ +++.+++++|| T Consensus 224 ~~~~~~~~~~~~---~~~vEval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~k----k~k~~i~~~dI 296 (369) T 3cwv_A 224 HPEPVVFDFTWD---GLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG----ETRGAFPWARV 296 (369) T ss_dssp SSSCEEEEEEET---TEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT----CCGGGSCHHHH T ss_pred CCCCEEEEEEEE---EEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH----HCCCCCCHHHH T ss_conf 547789997766---55389999974888623786347874899988688699999999998743----11135878887 Q ss_pred CCCEEEEEEEEEEH--HHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 36426999977634--56076446620252320000121015889997740135688999999999 Q gi|254780222|r 363 MISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 (686) Q Consensus 363 k~~L~~~Isv~I~n--P~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a 426 (686) |++|+++|++++++ |+|+||||++|+||+++..|+..+.+.|..||++||..++.|+++++.+. T Consensus 297 regL~~visV~~~~~nP~FegQTKekL~~~~v~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369) T 3cwv_A 297 AQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369) T ss_dssp TTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC----- T ss_pred HCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC T ss_conf 528789999987898998078474761698799999999999999999979899999999998666 No 7 >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Probab=100.00 E-value=0 Score=723.52 Aligned_cols=250 Identities=44% Similarity=0.747 Sum_probs=232.6 Q ss_pred HHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCC Q ss_conf 4433444-221100245653335677656554037997327676421001011222012211231314454108776322 Q gi|254780222|r 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 (686) Q Consensus 432 ~~k~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N 510 (686) ++++|++ +||+++...+|||||+||+++++++|||||||||||+|||+|||||++|||||||||||||++++.++|++| T Consensus 1 ~~~ar~l~rrk~~l~~~~lpgkl~d~~~~~~~~~~l~~~egdsa~~~~~~~r~~~~~~~~pl~gk~ln~~~~~~~~~~~n 80 (420) T 3nuh_B 1 SNAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 80 (420) T ss_dssp -----------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCC T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHCC T ss_conf 93578878410234568998620201148976557999757566777764348666688653886432402788788568 Q ss_pred HHHHHHHHHHCCCCCCC-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEE Q ss_conf 88999998825665433-33346552518999779877146889999999987088863393899309969997489799 Q gi|254780222|r 511 QQIMDLVQALGCRTRSQ-YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589 (686) Q Consensus 511 ~Ei~~l~~~lGl~~g~~-~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~ 589 (686) +||.+|++||||++|.+ ||+++||||||||||||||||+||+||||||||++||+|+++||||+++||||+|++|++.. T Consensus 81 ~ei~~l~~~lg~~~~~~~~~~~~lry~~i~i~tdad~dg~hi~~ll~~~~~~~~~~l~~~g~~~~~~~p~~~~~~~k~~~ 160 (420) T 3nuh_B 81 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ 160 (420) T ss_dssp HHHHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEECCHHHEECCCCEE T ss_conf 99999999976688977677000554527997357877520588999999986767650780699847246323487107 Q ss_pred EECCHHHHHHHHHHH----------------------------------------------------------------- Q ss_conf 937899999999987----------------------------------------------------------------- Q gi|254780222|r 590 YAHDEEHKQKILEEF----------------------------------------------------------------- 604 (686) Q Consensus 590 y~~~e~e~~~~~~~~----------------------------------------------------------------- 604 (686) |+|++.|+++|+-+. T Consensus 161 y~~~~~~~~~~li~~g~e~~~L~~~~~g~~isg~eL~~ll~~~~~~~~ll~~l~rr~~~~~l~~l~~~~~l~~~~l~~~~ 240 (420) T 3nuh_B 161 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ 240 (420) T ss_dssp EECCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHH T ss_pred EEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHH T ss_conf 88503678899997413574663155553246477888899999999999987542667789999853333244321179 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780222|r 605 -------------------------------------------------------------------------------- 604 (686) Q Consensus 605 -------------------------------------------------------------------------------- 604 (686) T Consensus 241 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~e~~~~~~~i~~~~~Gv~~~~~I~~~f~~s~e~~~l~~~~~~~~~~~~~~ 320 (420) T 3nuh_B 241 TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEED 320 (420) T ss_dssp HHHHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTS T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999986553037605899853465552215899984473225633988844767899999999875541245 Q ss_pred ----------------------HHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH Q ss_conf ----------------------7417886078685067788988998860394000799998664102679899999988 Q gi|254780222|r 605 ----------------------KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 (686) Q Consensus 605 ----------------------~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~l 662 (686) ...++.+.+||||||||||||+|||||||||++|+|+||+++| +..||++|++| T Consensus 321 ~~~~~~~~~~~i~s~~ell~~v~~~gkKGlsIQRYKGLGEMNPeQLWETTMDP~~RtLLqV~IeD----a~~AD~iFs~L 396 (420) T 3nuh_B 321 AFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKD----AIAADQLFTTL 396 (420) T ss_dssp EEEEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHH----HHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEEECHH----HHHHHHHHHHH T ss_conf 30125764521376899999999960789812345647777988986415281026179985134----88999899872 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 07981689999997524677517 Q gi|254780222|r 663 MGTKADERFKFIQERASFIDDVG 685 (686) Q Consensus 663 mG~~~~~RK~wi~~~~~~~~~ld 685 (686) ||++|+|||+||++||..|.||| T Consensus 397 MGD~VEPRR~FIe~NAl~V~NLD 419 (420) T 3nuh_B 397 MGDAVEPRRAFIEENALKAANID 419 (420) T ss_dssp CSCC------------------- T ss_pred CCCCCHHHHHHHHHHHHHHHHCC T ss_conf 69995788999999840323259 No 8 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=100.00 E-value=0 Score=681.50 Aligned_cols=255 Identities=42% Similarity=0.701 Sum_probs=229.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECC Q ss_conf 99999999965454433444221100245653335677656554037997327676421001011222012211231314 Q gi|254780222|r 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 (686) Q Consensus 419 ~~~~~~~a~~r~~~~k~k~~~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLN 498 (686) +++++++|++|+++ ++++.||+..+..+|||||+||+++++++|||||||||||+|+|++||||+||||||||||+|| T Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~kl~d~~~~~~~~~~l~l~EGdSA~g~~~~~rd~~~~~v~plrGK~lN 78 (767) T 2xkj_E 1 MEMAISKAGRRLKA--AKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN 78 (767) T ss_dssp --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC T ss_pred CHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHH T ss_conf 95799999999998--8752155556679998644010789966678999777787602001068786788653774031 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 45410877632288999998825665433333465525189997798771468899999999870888633938993099 Q gi|254780222|r 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 (686) Q Consensus 499 v~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tP 578 (686) |++|+.++|++|+||++|++||||++|+ +|.++||||||||||||||||+||+||||||||+|||+||+.||||+|+|| T Consensus 79 v~~~~~~~~~~N~ei~~l~~~lGl~~~~-~~~~~lrYg~i~imtD~D~DG~hI~~Lll~ff~~~~p~L~~~g~~~~~~tP 157 (767) T 2xkj_E 79 TWEVSSDEVLASQEVHDIAIAIGVDPGS-DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMPP 157 (767) T ss_dssp CTTSCTTTGGGSHHHHHHHHHHTCCTTC-CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECCC T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEECC T ss_conf 3258888887269999999997899798-862127778479997899770379999999999878997547965897276 Q ss_pred EEEEEECCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHH Q ss_conf 69997489799937899999999987741788607868506778898899886039400079999866410267989999 Q gi|254780222|r 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 (686) Q Consensus 579 l~kv~~g~~~~y~~~e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~ 658 (686) ||||++|++++|||+++|+++|+++.+ +..+|+||||||||||+|+|+|||||||++|+|.+|.++++ +.+++. T Consensus 158 l~k~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~l~~~~~~~~----~~~~~~ 231 (767) T 2xkj_E 158 LFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDA----HLTAGL 231 (767) T ss_dssp SEEEEETTEEEEESSHHHHHHHHHTCC--SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSH----HHHHHH T ss_pred EEEEECCCEEEECCCHHHHHHHHHHHC--CCCCCCCHHCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCH----HHHHHH T ss_conf 799962986684477699999888723--79763200013201024699999722843468862356530----557999 Q ss_pred HH-HHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99-8807981689999997524677 Q gi|254780222|r 659 IN-KLMGTKADERFKFIQERASFID 682 (686) Q Consensus 659 f~-~lmG~~~~~RK~wi~~~~~~~~ 682 (686) |+ .+||+++++||+||++++++++ T Consensus 232 ~~~~~~~~~~~~Rk~~l~~~~~~~~ 256 (767) T 2xkj_E 232 LDKLLAKKRAADRKQWLEQKGNLAD 256 (767) T ss_dssp HHHHHCGGGHHHHHHHHHHHGGGCC T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCC T ss_conf 9998658970779999984674121 No 9 >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* Probab=100.00 E-value=0 Score=669.80 Aligned_cols=238 Identities=42% Similarity=0.709 Sum_probs=221.5 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH Q ss_conf 22110024565333567765655403799732767642100101122201221123131445410877632288999998 Q gi|254780222|r 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 (686) Q Consensus 439 ~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~ 518 (686) +||++.+..+|||||+||+++++++|||||||||||+|+|+|||||++||||||||||||||+++.++|++|+||++|++ T Consensus 23 ~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~L~~ 102 (268) T 3k9f_C 23 HMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIY 102 (268) T ss_dssp -------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHHHH T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHHHHH T ss_conf 33101335899852314478996654799977768751300326878789975388637354465989875888889998 Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC----EEEEECCH Q ss_conf 82566543333346552518999779877146889999999987088863393899309969997489----79993789 Q gi|254780222|r 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDE 594 (686) Q Consensus 519 ~lGl~~g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~----~~~y~~~e 594 (686) ||||++|++||+++||||||||||||||||+||+||||||||+|||+||++||||+++||||+|++|+ +.+|++++ T Consensus 103 ~LGl~~g~~~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y~~~~ 182 (268) T 3k9f_C 103 TIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTD 182 (268) T ss_dssp HHCSCC--CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEECSH T ss_pred HHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEEEECC T ss_conf 74446788787433764548998279988588999999999997499702896689538708999368876326776502 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999999877417886078685067788988998860394000799998664102679899999988079816899999 Q gi|254780222|r 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 (686) Q Consensus 595 ~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi 674 (686) .+++++.++. ..+|+||||||||||+|+|+|||||||++|+|++|++++ ...++++|++|||++|++||+|| T Consensus 183 ~~~~~~~~~~----~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d----~~~~~~~~~~l~gk~~d~RK~wi 254 (268) T 3k9f_C 183 GELEELRKQF----GKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWI 254 (268) T ss_dssp HHHHHHHHHS----CTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSC----SHHHHHHHHHHHSSCCHHHHHHH T ss_pred CHHHHHHHHH----CCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCC----HHHHHHHHHHHCCCCCHHHHHHH T ss_conf 1458999971----888625757877879999999983595246899974474----78799999987599968999999 Q ss_pred HHHHHH-HHHC Q ss_conf 975246-7751 Q gi|254780222|r 675 QERASF-IDDV 684 (686) Q Consensus 675 ~~~~~~-~~~l 684 (686) ++|+.| +|++ T Consensus 255 ~~n~~~~~d~~ 265 (268) T 3k9f_C 255 EDNVKFTLEEA 265 (268) T ss_dssp HHHCCCC---- T ss_pred HHHCCHHHHHH T ss_conf 98343024443 No 10 >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Probab=100.00 E-value=0 Score=639.11 Aligned_cols=230 Identities=38% Similarity=0.611 Sum_probs=214.9 Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 35677656554037997327676421001011222012211231314454108776322889999988256654333334 Q gi|254780222|r 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 (686) Q Consensus 452 KL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~ 531 (686) -|+||+++++++|||||||||||+|+|++||||++||||||||||||||+++.++|++|+||++|++||||+++++||++ T Consensus 8 ~l~d~~~~~~~~~~L~l~EGDSA~g~a~~grd~~~~gv~PLrGK~lNv~~~~~~ki~~N~Ei~~l~~~lG~~~~~~~d~~ 87 (242) T 3m4i_A 8 HVDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIG 87 (242) T ss_dssp -------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGGCCGG T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 46555678812228999777674012103247786678415895361522438787642689999999667878767700 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC-EEEEECCHHHHHHHHHHHHH---C Q ss_conf 6552518999779877146889999999987088863393899309969997489-79993789999999998774---1 Q gi|254780222|r 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKK---H 607 (686) Q Consensus 532 ~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~-~~~y~~~e~e~~~~~~~~~~---~ 607 (686) +|||||||||||||+||+||+||||||||+|||+||++||||+++||||+|+.++ ...++|++.++..|+++..+ . T Consensus 88 ~LRYgkIiimtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~v~i~~~Pl~~vk~~k~~~~~~~~~~~~~~~~~~~~k~~~~ 167 (242) T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242) T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHCCC T ss_conf 05646179983788552203778999998547899972976897188458997067338705668899999985663044 Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 788607868506778898899886039400079999866410267989999998807981689999997524677517 Q gi|254780222|r 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 (686) Q Consensus 608 ~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi~~~~~~~~~ld 685 (686) ..++|+||||||||||+|+|+|||||||++|+|.+|++++ ++.++++|++|||++|++||+||++||.++.+|| T Consensus 168 ~~k~~~IkyyKGLGe~~~~Elke~~~np~~r~l~~v~~dd----~~~ad~~f~~lmgk~ad~RK~wI~~~a~~v~~lD 241 (242) T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 241 (242) T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHH----HHHHHHHHHHHHHC-------------------- T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC T ss_conf 4666652100020226899999984490304688731686----8999999999818995799999998615054278 No 11 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=100.00 E-value=0 Score=606.80 Aligned_cols=225 Identities=28% Similarity=0.416 Sum_probs=203.4 Q ss_pred CCCCCCCCCCCCC---CCCCCEEEEEEECCCCCCCCHHHCC---CCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHH Q ss_conf 2456533356776---5655403799732767642100101---122201221123131445410877632288999998 Q gi|254780222|r 445 RKLRLPGKLADCS---QNIAHGTELFIVEGDSAGGSAKQAR---NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 (686) Q Consensus 445 ~~~~lpgKL~Da~---~~~~~~~eL~lvEGDSA~gsAk~gr---dr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~ 518 (686) +..++| ||+||+ ++++++|||||||||||+|+|++|+ +|+||||||||||||||++++.++|++|+||++|++ T Consensus 2 ~~~~~p-kl~da~~ag~~~~~~~~L~l~EGdSA~~~~~~g~~~~~rd~~g~~plrGK~lN~~~~~~~~~~~n~ei~~l~~ 80 (757) T 3l4j_A 2 RITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKK 80 (757) T ss_dssp CCCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH T ss_pred CCCCCC-CHHHHHHHCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCHHHHHHCHHHHHHHH T ss_conf 867987-6555654079986451799965758522112765321664378853377330014698888861599999999 Q ss_pred HHCCCCCCCC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCEEEEEE---CCEEEEECC Q ss_conf 8256654333-3346552518999779877146889999999987088863-3938993099699974---897999378 Q gi|254780222|r 519 ALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQ---GTKSVYAHD 593 (686) Q Consensus 519 ~lGl~~g~~~-~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~-~g~v~~~~tPl~kv~~---g~~~~y~~~ 593 (686) ||||++|+.| |+++|||||||||||||+||+||+||||||||+|||+||+ +||||+|+||||||+. +++..+||+ T Consensus 81 ~lG~~~~~~~~~~~~lrYg~i~imtD~D~DG~hI~~Ll~~~f~~~~p~L~~~~g~i~~~~tPl~~~~~~~~~~~~~~fy~ 160 (757) T 3l4j_A 81 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYN 160 (757) T ss_dssp HTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESS T ss_pred HHCCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCEEEEEECCCCCCEEECCC T ss_conf 97789798878611277685899987888703799999999988688973559989999698299980688750110332 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 99999999987741788607868506778898899886039400079999866410267989999998807981689999 Q gi|254780222|r 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 (686) Q Consensus 594 e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~w 673 (686) +.|+++|.++.. ...+|+||||||||||+|+|+|||||||++|++.+++++++ ..+.++..|+|+++++||+| T Consensus 161 ~~e~~~~~~~~~--~~~~~~i~yyKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-----~~~~~~~~F~k~~~~~RK~w 233 (757) T 3l4j_A 161 MPDYEKWREEES--HKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-----DKDYIDLAFSKKKADDRKEW 233 (757) T ss_dssp HHHHHHHHHHTG--GGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTT-----HHHHHHHHHCTTCHHHHHHH T ss_pred HHHHHHHHHHHC--CCCCCCCEEECCCCCCCHHHHHHEECCCCCCEEEEEECCCH-----HHHHHHHHHHCCCCHHHHHH T ss_conf 549999876516--77643200104767676011244001554336999964615-----78899999721353058999 Q ss_pred HHHH Q ss_conf 9975 Q gi|254780222|r 674 IQER 677 (686) Q Consensus 674 i~~~ 677 (686) |+++ T Consensus 234 L~~~ 237 (757) T 3l4j_A 234 LRQY 237 (757) T ss_dssp HHHC T ss_pred HHCC T ss_conf 7426 No 12 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Probab=100.00 E-value=0 Score=552.25 Aligned_cols=196 Identities=47% Similarity=0.782 Sum_probs=187.3 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCC Q ss_conf 24565333567765655403799732767642100101122201221123131445410877632288999998825665 Q gi|254780222|r 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 (686) Q Consensus 445 ~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~ 524 (686) +.++|||||+||+++++++|||||||||||+|+|++||||++|||||||||+||||+|+.+||++|+||++|++||||++ T Consensus 2 ~~~~~p~KL~d~~t~~~~~ctLiltEGDSA~g~~~~grd~~~~gvfpLrGK~lNv~~~~~~~i~~N~Ei~~i~~ilGl~~ 81 (692) T 2xcs_B 2 DVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI 81 (692) T ss_dssp -------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 86789974010178996666899977635501000016878678875378412033698889875799999999978998 Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCEEEEECCHHHHHHHHHHH Q ss_conf 43333346552518999779877146889999999987088863393899309969997489799937899999999987 Q gi|254780222|r 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 (686) Q Consensus 525 g~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~ff~~~~p~Li~~g~v~~~~tPl~kv~~g~~~~y~~~e~e~~~~~~~~ 604 (686) |++||+++|||||||||||||+||+||+||||||||+|||+|+++||||+|+|| T Consensus 82 ~~~yd~~~lRYg~i~imtDqD~DG~hIkgLlin~f~~~~p~L~~~g~~~~~~tP-------------------------- 135 (692) T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP-------------------------- 135 (692) T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCC-------------------------- T ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECC-------------------------- T ss_conf 997776667768589998799883079999999999868897852956899897-------------------------- Q ss_pred HHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 7417886078685067788988998860394000799998664102679899999988079816899999975246 Q gi|254780222|r 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 (686) Q Consensus 605 ~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~~~~~~~f~~lmG~~~~~RK~wi~~~~~~ 680 (686) +||||||||++.|+|+|+++|++|.+.+|.+.+ ...+++.|+.|||++++.||+|+.+++.. T Consensus 136 ----------~~~k~~~~~~~~e~~~~~~~~~~r~~~~~~~~~----~~~~~~~f~~~~~~~~~~r~~~~~~~~~~ 197 (692) T 2xcs_B 136 ----------TGYKGLGEMNADQLWETTMNPEHRALLQVKLED----AIEADQTFEMLMGDVVENRRQFIEDNAVY 197 (692) T ss_dssp ----------SSCSSGGGSCHHHHHHHHTCTTTCCCEEEECCC----HHHHHHHHHHHHSSCHHHHHHHHHHHCCC T ss_pred ----------EEEECCCCCCHHHHHHHCCCCCCEEEEEEEECC----CCCHHHHHHHHHCCCCHHHHHHHHHCCCH T ss_conf ----------534416657878999870485653589999467----65278999998375423667665422301 No 13 >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Probab=100.00 E-value=0 Score=525.31 Aligned_cols=200 Identities=42% Similarity=0.711 Sum_probs=189.3 Q ss_pred CCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 21034326981546777550220244366667877761899769999828983999966984344417665787012345 Q gi|254780222|r 54 GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 (686) Q Consensus 54 glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Eli 133 (686) ||||||+||||||||+ |||||||||||||+||+++|+|+.|.|+++.||+|+|+||||||||++||+ +++|+||+| T Consensus 1 glE~Vr~RPgMYiGs~---gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~sitV~d~GrGIPv~~h~~-~~~~~~e~i 76 (201) T 3fv5_A 1 GLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELI 76 (201) T ss_dssp CCHHHHHCGGGTSCTT---STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTT-CSSBHHHHH T ss_pred CCHHHHCCCCCEECCC---CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEECCC-CCCCEEEEE T ss_conf 9567621897268998---877078688881354875489837999991898099999789646858677-897145999 Q ss_pred EEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCC-CCCCEEEEEEEC Q ss_conf 4520024777777415631445388987620321269999418838999972794511311216767-788539999984 Q gi|254780222|r 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 (686) Q Consensus 134 f~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~-~k~GT~ItF~PD 212 (686) ||+||||||||+++|++||||||||||||||||++|+|+++|+|++|+|+|++||+..++++++.++ +++||+|+|+|| T Consensus 77 ~t~l~ag~~fd~~~~k~sgG~~GvG~~~vNalS~~~~v~v~r~g~~~~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD 156 (201) T 3fv5_A 77 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 156 (201) T ss_dssp HHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEECC T ss_conf 99970357678876411377576052344765161699994189899999839930676348741467898499999788 Q ss_pred HHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEE Q ss_conf 24320012222899999888875305773599951645322245541123431 Q gi|254780222|r 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 (686) Q Consensus 213 ~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~ 265 (686) +++|++ ..|+.+.|.+|++++|||||||+|.|+|++. ..+++||| T Consensus 157 ~~iF~~-~~~~~d~l~~rl~~~A~L~~Gl~i~~~Der~-------~~~~~f~y 201 (201) T 3fv5_A 157 ETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCY 201 (201) T ss_dssp GGGSSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------TEEEEECC T ss_pred HHHCCC-CEECHHHHHHHHHHHHCCCCCCEEEEEECCC-------CCEEEEEC T ss_conf 432375-5897999999999996047997899998478-------96888889 No 14 >3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A* Probab=100.00 E-value=0 Score=516.05 Aligned_cols=195 Identities=43% Similarity=0.744 Sum_probs=187.4 Q ss_pred CCHHHHCCCCEEECCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 21034326981546777-55022024436666787776189976999982898399996698434441766578701234 Q gi|254780222|r 54 GLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132 (686) Q Consensus 54 glE~VrkRP~mYIGst~-~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~El 132 (686) ||||||+|||||||||+ .+|||||||||||||+||+++++|+.|.|+++.||+|||+||||||||++||+ +++|+||| T Consensus 1 glEhVr~RP~mYiGs~~~~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg~isV~ddG~GIPv~~h~~-~~~~~~el 79 (203) T 3g7e_A 1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEV 79 (203) T ss_dssp CHHHHHHSGGGTTCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSCCTT-TCCCHHHH T ss_pred CCHHHHCCCCCEECCCCCCCCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCC-CCCCEEEE T ss_conf 95567408988881378887274899988883445631599976899996799799998997745644576-69822068 Q ss_pred EEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEEEC Q ss_conf 54520024777777415631445388987620321269999418838999972794511311216767788539999984 Q gi|254780222|r 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 (686) Q Consensus 133 if~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD 212 (686) |||+||||+|||+++|++|||+||||||||||||++|+|+++|+|+.|+|+|++||+..+++.++++ +++||+|+|+|| T Consensus 80 if~~l~tg~nyd~~~~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~-~~~gT~V~F~PD 158 (203) T 3g7e_A 80 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPS 158 (203) T ss_dssp HHHSTTCCSEECTTCCEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEEC T ss_pred EEEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCEEEEEEEC T ss_conf 9989840477888861311675786728989862189999998999999998499298882352576-899889999979 Q ss_pred HHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 24320012222899999888875305773599951645 Q gi|254780222|r 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 (686) Q Consensus 213 ~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~ 250 (686) +++|++...|+.++|.+|++++|||+|||+|.|+|+|. T Consensus 159 ~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~v~~nder~ 196 (203) T 3g7e_A 159 LETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 196 (203) T ss_dssp TTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCC T ss_conf 31026754147999999999981358985899996478 No 15 >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=590.50 Aligned_cols=573 Identities=12% Similarity=0.002 Sum_probs=430.6 Q ss_pred CCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCC----EEEEEECCCCCCC Q ss_conf 697560231121034326981546777550220244366667877-76189976999982898----3999966984344 Q gi|254780222|r 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE-VIAGYANLIEVSLDGNG----FLTVVDNGRGIPV 118 (686) Q Consensus 44 Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe-~~~g~~~~I~V~i~~dg----~IsV~ddGrGIPv 118 (686) |=|+....++..|--.+.+.|.-.||..+||||+++|+||||+|+ +.+|||+.|.|+|+.+| +|+|.|||||||+ T Consensus 8 ~~~~~~~~~~~~ef~~~~~~~l~~~~~~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~~ 87 (621) T 2q2e_B 8 ELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVR 87 (621) T ss_dssp ---CCCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCG T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCH T ss_conf 99852221789999997376745788621789989999971886897639998259999968996469999984899998 Q ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEE-----EEEEEE--CCCEEEEEEEECCCEEC Q ss_conf 41766578701234545200247777774156314453889876203212-----699994--18838999972794511 Q gi|254780222|r 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE-----LHVTVA--RQNTIFSQKFSRGIPLS 191 (686) Q Consensus 119 ~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~-----f~Vev~--r~gk~y~q~f~~g~~~~ 191 (686) |.|+ .+||+||+||||+ .|+.+||+||||+++||++|.+ ++|.+. ++++.|.+.|..+.... T Consensus 88 d~~~---------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~~~~ 156 (621) T 2q2e_B 88 EQIP---------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTN 156 (621) T ss_dssp GGHH---------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSC T ss_pred HHHH---------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCC T ss_conf 9999---------9860846677876--6511799766567688887686428638999961798725999841566556 Q ss_pred CCEE-CCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCH Q ss_conf 3112-167677885399999842432001222289999988887530577359995164532224554112343158612 Q gi|254780222|r 192 PLEK-KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 (686) Q Consensus 192 ~~~~-i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~ 270 (686) .... ...+...+++.++++||...|. ...+..+.|.+++++.|+++|++++.+.++... .+.++.. T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~----------~~~~~~~-- 223 (621) T 2q2e_B 157 EPDILVDEVRDWFRPHGTQIELEMRAA-YVKGRRQSIYEYLKATAIVNPHARITLIDPDGN----------EEVFERA-- 223 (621) T ss_dssp SCCCCCEEECCCSCSSCCCEEEECSCC-CCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC----------CEEEECC-- T ss_pred CCCEEECCCCCCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----------EEEEECC-- T ss_conf 773110365566444047974022343-012268999999999985087856998648997----------0687345-- Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCC-CEEEEEEECCCC-CCCEEECCHHHHHHHHHHHHHHH Q ss_conf 2210024677666775203333214801558999854146777-427888300065-57524130467899999987630 Q gi|254780222|r 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTD-EGGTHESGLRVALTRGIKKYAEL 348 (686) Q Consensus 271 dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~-~~~SFVN~I~T~-~GGTHv~g~~~ai~k~i~~~~~~ 348 (686) .+.++. . ..+|...+++... ++.+|++++.+. .+|+|..+|....++.++.++.. T Consensus 224 --~e~~~~-------~--------------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (621) T 2q2e_B 224 --TDKMPE-------P--------------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKA 280 (621) T ss_dssp --CCCCCC-------C--------------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHT T ss_pred --CCCCCC-------C--------------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHH T ss_conf --545798-------6--------------61124088765289999998536777660168764020049999999976 Q ss_pred CCC---CCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 188---33222332222364269999776345607644662025232000012101588999774013568899999999 Q gi|254780222|r 349 TQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 (686) Q Consensus 349 ~~~---kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~ 425 (686) .+. .+...+.+++++.++.+++++.+++|++++|++ +.+...+..+...+...|..|+.+++..++.+.++.... T Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621) T 2q2e_B 281 AGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVG 358 (621) T ss_dssp TTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH T ss_conf 588855472328999998466115766624896435786--677999999999999999999865977553278999999 Q ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCEEEEEECCEECCHHHHHH Q ss_conf 9965454433444-221100245653335677656554037997327676421001011222012211231314454108 Q gi|254780222|r 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 (686) Q Consensus 426 a~~r~~~~k~k~~-~rk~~~~~~~lpgKL~Da~~~~~~~~eL~lvEGDSA~gsAk~grdr~~qgi~PLRGKiLNv~~as~ 504 (686) .+.+.++.+.+.. .++...+...||++++||.+++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++.. T Consensus 359 ~~~~~~~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~ 438 (621) T 2q2e_B 359 MAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAI 438 (621) T ss_dssp EEESSSSCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSB T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHH T ss_conf 99720543155156665442355554555555126511200445413465676776640101032443153778888730 Q ss_pred -HHHHCCHHHHHHHHHHCCCCC----CCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH-------HHHHHHHHHHHCCCE Q ss_conf -776322889999988256654----33333465525189997798771468899999-------999870888633938 Q gi|254780222|r 505 -EKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLT-------FFYQEMYDLIEQKHL 572 (686) Q Consensus 505 -~ki~~N~Ei~~l~~~lGl~~g----~~~~~~~LRYgkIiImTDaD~DGsHI~~Lll~-------ff~~~~p~Li~~g~v 572 (686) +.+.-+++|...+..+|.+++ +.++...+||.+++||+|+|.+|.||+.|+.+ +|+|+|+.|++.|++ T Consensus 439 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v 518 (621) T 2q2e_B 439 ADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVI 518 (621) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 13788999999999999886502132256688888756766554157899999986141256789999985454004358 Q ss_pred EEECCCEEEEEECCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCH Q ss_conf 99309969997489799937899999999987741788607868506778898899886039400079999866410267 Q gi|254780222|r 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 (686) Q Consensus 573 ~~~~tPl~kv~~g~~~~y~~~e~e~~~~~~~~~~~~~~k~~i~ryKGLGe~~~~e~~et~~~p~~r~l~~v~~~~~~~~~ 652 (686) |+++||+|++.......+.+.+.. +.++.++ ........++.+|+++|+|+|+|+|||||++|++++|++.+..+.. T Consensus 519 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~ 595 (621) T 2q2e_B 519 KNNGDGTVDVAIKVKNFGTSAYSF--RVHEMLP-CKVSGAKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEE 595 (621) T ss_dssp CCSSSCCEEEEEEECC----CCCE--EECCEES-CCC---CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGS T ss_pred EECCCCCCCEEEEEHHHHHHHHHH--HHHHHHH-HCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCC T ss_conf 966688764578623132167659--9998523-1144320001334667887788773338677248999846702252 Q ss_pred HHHHHHHHHHCCCCHHHHH Q ss_conf 9899999988079816899 Q gi|254780222|r 653 KDTQDSINKLMGTKADERF 671 (686) Q Consensus 653 ~~~~~~f~~lmG~~~~~RK 671 (686) ...+..||++.+++|+ T Consensus 596 ---~~~~~~l~~~~v~~~~ 611 (621) T 2q2e_B 596 ---LQKLPQLIVEGIEEEL 611 (621) T ss_dssp ---CCCCCBBCC------- T ss_pred ---HHHHHHHHHCCCCHHH T ss_conf ---4442787748658656 No 16 >3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A* Probab=100.00 E-value=0 Score=454.99 Aligned_cols=184 Identities=40% Similarity=0.686 Sum_probs=171.5 Q ss_pred CCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 21034326981546777550220244366667877761899769999828983999966984344417665787012345 Q gi|254780222|r 54 GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 (686) Q Consensus 54 glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Eli 133 (686) ||||||||||||||||+.+|||||+|||||||+||+++|+|++|.|++++||+|+|+|||||||||+|++ +++|+||+| T Consensus 1 glE~Vr~RPgMYiGst~~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~si~V~D~GRGIPvd~h~~-~~~~~~e~i 79 (184) T 3g75_A 1 GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK-MGRPAVEVI 79 (184) T ss_dssp CTTTTTTCHHHHTSCSSHHHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGCEEEEECSSCCCCCBCTT-TSCBHHHHH T ss_pred CCHHHHHCCCCEECCCCCCCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC-CCCCHHHEE T ss_conf 9567720899776669985222331011135665875597754599996899699999357751110245-797513188 Q ss_pred EEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEEECH Q ss_conf 45200247777774156314453889876203212699994188389999727945113112167677885399999842 Q gi|254780222|r 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 (686) Q Consensus 134 f~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~ 213 (686) || +|||||||+||+|+++|+|+.|+|+|++|++..+++++++++ ++||+|+|+||+ T Consensus 80 ~t-----------------------~svvNALS~~l~v~v~rdgk~~~q~f~~G~~~~~l~~~~~~~-~~GT~I~F~PD~ 135 (184) T 3g75_A 80 LT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTD-KTGTVIRFKADG 135 (184) T ss_dssp HT-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEECS-CCEEEEEEEECT T ss_pred EE-----------------------EEEEEECCCEEEEEEEECCEEEEEEECCCEECCCCEECCCCC-CCCCEEEEECCC T ss_conf 76-----------------------899471688499999989999999967987998733657767-997599998990 Q ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEC Q ss_conf 43200122228999998888753057735999516453222455411234315 Q gi|254780222|r 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 (686) Q Consensus 214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~ 266 (686) ++|++...|+.+.|.+|++++|||||||+|.|+|+|.. ....+++|||+ T Consensus 136 ~iF~~~~~~~~~~l~~rl~~~A~Ln~Gl~i~l~d~r~~----~~~~~~~f~ye 184 (184) T 3g75_A 136 EIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDE----ENVREDSYHYE 184 (184) T ss_dssp TTSCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSST----TEEEEEEECCC T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCC----CCCCCEEEECC T ss_conf 31356652589999999999731689879999972689----88651777539 No 17 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Probab=99.69 E-value=4.2e-14 Score=114.61 Aligned_cols=309 Identities=18% Similarity=0.262 Sum_probs=183.1 Q ss_pred ECCCCHHHHCCCCEEEC-CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC--CC----EEEEEECCCCCCCCCCC Q ss_conf 31121034326981546-7775502202443666678777-61899769999828--98----39999669843444176 Q gi|254780222|r 51 ILEGLEPVRMRPGMYIG-GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG--NG----FLTVVDNGRGIPVENHP 122 (686) Q Consensus 51 ~L~glE~VrkRP~mYIG-st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~--dg----~IsV~ddGrGIPv~~h~ 122 (686) .++-.|-..+-..| .| ++..+.|+..+.|+|+||+|.. .+|....|.|+|.. ++ .|+|.|||.|||-+.. T Consensus 10 ~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i- 87 (471) T 1mu5_A 10 SLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV- 87 (471) T ss_dssp -CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH- T ss_pred HCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH- T ss_conf 45999998863564-2778702169999999999999978855998716999997368886899999962899999999- Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEE-----EEEEEEECC--CEEEEEEEE----CCCEEC Q ss_conf 657870123454520024777777415631445388987620321-----269999418--838999972----794511 Q gi|254780222|r 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD-----ELHVTVARQ--NTIFSQKFS----RGIPLS 191 (686) Q Consensus 123 k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~-----~f~Vev~r~--gk~y~q~f~----~g~~~~ 191 (686) +.+|+.+++|++|... -++|..|+|++.+..+|. .+.|++... ...|..... .|.+.. T Consensus 88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i 156 (471) T 1mu5_A 88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII 156 (471) T ss_dssp --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE T ss_pred --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC T ss_conf --------9986502625676650---36896213489999999973794699999448997379987322135677656 Q ss_pred C-CEECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-------CCCCCCEEEE Q ss_conf 3-1121676778853999998424320012222899999888875305773599951645322-------2455411234 Q gi|254780222|r 192 P-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------KYGIPEKEEF 263 (686) Q Consensus 192 ~-~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~-------~~~~~~~~~f 263 (686) . ...+......+||.|++..+..... ....+...++..|..||-+++.|.+...... .......+.. T Consensus 157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~-----~~~~i~eyl~rtAi~nPha~i~~~~p~~e~~~~~r~~~~lP~~p~eik 231 (471) T 1mu5_A 157 VERGSVENTRGFHGTSVAISIPGDWPK-----AKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQEVK 231 (471) T ss_dssp EEEEEEECCTTCCEEEEEEEEECCHHH-----HHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCCCCCCC T ss_pred CCCEEEECCCCCCCEEEEEEECCHHHH-----HHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCC T ss_conf 787066057666771699850301777-----777899999887640887189998699974896241123789733126 Q ss_pred EECCCC------------------HHHHHCCCC------------------C---------------------CCCCCC- Q ss_conf 315861------------------222100246------------------7---------------------766677- Q gi|254780222|r 264 YFPGGL------------------KTYLQTKLE------------------N---------------------RSLISS- 285 (686) Q Consensus 264 ~~~~Gi------------------~dyv~~~~~------------------~---------------------~~~~~~- 285 (686) .++.|+ .+|+..... + +....+ T Consensus 232 PHP~gv~l~~l~~ml~~~~~~~~l~~FL~~~Fs~V~~~~a~~i~~~~g~~~~~~p~~l~~~e~~~l~~a~~~~~~~~~P~ 311 (471) T 1mu5_A 232 PHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPS 311 (471) T ss_dssp CCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCC T ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 88002006779999985546662678888754776989999999974999777714499999999999998530467898 Q ss_pred -CCEE--------------------EEEEEC----CCEEEEEEEEEEECCC-----CCCEEEEEEECCCCCCCEEECCHH Q ss_conf -5203--------------------333214----8015589998541467-----774278883000655752413046 Q gi|254780222|r 286 -EIFT--------------------GKTEKK----GTHRGTVEWAIAWCEE-----NPEITSYCNTILTDEGGTHESGLR 335 (686) Q Consensus 286 -~~~~--------------------~~~~~~----~~~~~~veval~~~~~-----~~~~~SFVN~I~T~~GGTHv~g~~ 335 (686) +..+ ...... .-+...||++++|..+ ..++.=|+|-||-.- +.=. T Consensus 312 t~~LsPige~~i~~gl~~~~~~~f~~~~tR~p~~~~g~pf~vE~~ia~gg~~~~~~~~~v~RfaNrvPLl~-----~~~~ 386 (471) T 1mu5_A 312 ADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIY-----DEKS 386 (471) T ss_dssp STTCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECS-----CGGG T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCC-----CCCC T ss_conf 64425077899986677505610588733587523799758998542267678889833898436787565-----4554 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCC Q ss_conf 789999998763018833222332222364269999776345607644662025 Q gi|254780222|r 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 (686) Q Consensus 336 ~ai~k~i~~~~~~~~~kk~~~i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s 389 (686) .+|++++... ..+ ..+++-.. .-+.++|++-.++--|.|-.||.+.. T Consensus 387 c~~t~~~~~i-~w~--~Ygl~~~~----~p~~v~vhv~St~vpfts~~Ke~ia~ 433 (471) T 1mu5_A 387 DVIWKVVEEL-DWK--RYGIESDQ----YQMVVMVHLCSTKIPYKSAGKESIAE 433 (471) T ss_dssp SHHHHHHHHS-CGG--GGTCCSSC----BCEEEEEEEEESSCCBSSTTCCCBCC T ss_pred HHHEEHHHHC-CHH--HCCCCCCC----CCEEEEEEECCCCCCCCCCCHHHHCC T ss_conf 1100012206-715--31879999----97799998455678978752455407 No 18 >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Probab=99.56 E-value=6.5e-12 Score=99.60 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=112.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCCCCC Q ss_conf 55022024436666787776189976999982898--39999669843444176657870123454520024--777777 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG--GKFDNS 146 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag--gnfdd~ 146 (686) ...+...+.|+|+||+| || |++|.|.++..| +|.|.|||.||+.+ .+ ++++..-+|| .+|+|- T Consensus 23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~------d~---~~~~~r~~TSK~~~~~dl 89 (367) T 3h4l_A 23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPS------NY---EFLALKHYTSKIAKFQDV 89 (367) T ss_dssp CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGG------GT---TTTTCCEEC--------- T ss_pred ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH------HH---HHHHHHCCCCCCCCCCCC T ss_conf 46889999999977764---89-5989999987984699999899988978------99---876542058755532233 Q ss_pred CEEEECCCCCHHHHHHHHEEEEEEEEEE-CCCEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE------ECHHH-EEC Q ss_conf 4156314453889876203212699994-188389999727945113112167677885399999------84243-200 Q gi|254780222|r 147 TYEISGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR------PDPKI-FGD 218 (686) Q Consensus 147 ~yk~sgGlnGvGaklvNalS~~f~Vev~-r~gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~------PD~~i-Fg~ 218 (686) ..--|.|..|.+++...+.|. +++.+. .+...+...|..+-..... ..+....||+|+.. |-..+ |.. T Consensus 90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~---~~~~~~~GTtV~V~dLF~n~PvRrk~~~k 165 (367) T 3h4l_A 90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSK---TTTSRNKGTTVLVSQLFHNLPVRQKEFSK 165 (367) T ss_dssp CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEE---EEECCSSEEEEEEESTTTTCHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHC T ss_conf 112466644078998875256-47998505876334999833752223---54345666634632030587677887650 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 12222899999888875305773599951 Q gi|254780222|r 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686) Q Consensus 219 ~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686) ...-....+...++..|..+|++.+.+.. T Consensus 166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~ 194 (367) T 3h4l_A 166 TFKRQFTKCLTVIQGYAIINAAIKFSVWN 194 (367) T ss_dssp THHHHHHHHHHHHHHHHHHCTTCEEEEEE T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 10267777788986443247970699986 No 19 >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Probab=99.41 E-value=3.2e-12 Score=101.69 Aligned_cols=182 Identities=22% Similarity=0.318 Sum_probs=125.1 Q ss_pred CHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCC Q ss_conf 975602311210343269815467775502202443666678777618997699998289--839999669843444176 Q gi|254780222|r 45 DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN--GFLTVVDNGRGIPVENHP 122 (686) Q Consensus 45 ~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d--g~IsV~ddGrGIPv~~h~ 122 (686) .+.+|+.|..--.-+.+-|-+|=+ +..++.|+|+||+| || |++|.|.++.. ++|+|.|||.|||-+ T Consensus 11 ~~~~I~~L~~~~~~~i~s~~vi~~-----~~svvkELieNSiD---A~-At~I~I~v~~~g~~~I~V~DnG~Gi~~~--- 78 (365) T 1h7s_A 11 PAKAIKPIDRKSVHQICSGQVVLS-----LSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEE--- 78 (365) T ss_dssp ------------------CEEECC-----HHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEECSCCCCGG--- T ss_pred CCCCCEECCHHHHHHHCCCCEECC-----HHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHH--- T ss_conf 987776199899988289773468-----88999999977872---89-8889999987984389999899875989--- Q ss_pred CCCCCEEEEEEEEEEECCC--CCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEE-CCC-EEEEEEEECCCEECCCEECCC Q ss_conf 6578701234545200247--777774156314453889876203212699994-188-389999727945113112167 Q gi|254780222|r 123 KFPNKSTLEIILTTLHAGG--KFDNSTYEISGGLHGVGISVVNALSDELHVTVA-RQN-TIFSQKFSRGIPLSPLEKKEK 198 (686) Q Consensus 123 k~~~~~~~Elif~~L~agg--nfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~-r~g-k~y~q~f~~g~~~~~~~~i~~ 198 (686) .+ ++++..-+|+. +++|-....|.|.+|.+++...+.|. +++.+. .++ ..|+..+.++..... .+. T Consensus 79 ---dl---~~~~~~~~tsk~~~~~d~~~~~t~GfRGeaL~si~~~s~-~~i~S~~~~~~~~~~~~~~~~~~~~~---~~~ 148 (365) T 1h7s_A 79 ---NF---EGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHNGKIIQ---KTP 148 (365) T ss_dssp ---GS---GGGGC----------CCTTCSEEESSSSSHHHHHHHHSE-EEEEEECTTCSSCEEEEECTTSCEEE---EEE T ss_pred ---HH---HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEECCCCCHHEEEEEECCCCCCC---CCC T ss_conf ---98---645420236776623365334557742278888886245-15888438974334999824665322---356 Q ss_pred CCCCCCEEEEEEE----CH---HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 6778853999998----42---43200122228999998888753057735999516 Q gi|254780222|r 199 VRNKRGTRITFRP----DP---KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 (686) Q Consensus 199 ~~~k~GT~ItF~P----D~---~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~ 248 (686) +....||+|+..= -+ +.|..........+...++..|..+|++.+.+.+. T Consensus 149 ~~~~~GTtV~v~~lF~n~PvRrk~~~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~ 205 (365) T 1h7s_A 149 YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQ 205 (365) T ss_dssp CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEE T ss_pred CCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 446787589996133577224332135205899999998765522279647999973 No 20 >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Probab=99.39 E-value=4.5e-11 Score=93.80 Aligned_cols=179 Identities=18% Similarity=0.289 Sum_probs=120.6 Q ss_pred EEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCC Q ss_conf 023112103432698154677755022024436666787776189976999982898--399996698434441766578 Q gi|254780222|r 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPKFPN 126 (686) Q Consensus 49 i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg--~IsV~ddGrGIPv~~h~k~~~ 126 (686) |+.|..--.=+.+-|-. ...+..++.|+|+||+| | .|++|.|.++..| .|.|.|||.|||-+ . T Consensus 9 I~~L~~~~~~~i~s~~v-----i~~~~s~vkELieNsiD---A-~At~I~i~i~~~g~~~I~V~DnG~Gi~~~------d 73 (348) T 3na3_A 9 IRRLDETVVNRIAAGEV-----IQRPANAIKEMIENCLD---A-KSTSIQVIVKEGGLKLIQIQDNGTGIRKE------D 73 (348) T ss_dssp CCCCCHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHH---T-TCSEEEEEEEGGGTSEEEEEECSCCCCGG------G T ss_pred CEECCHHHHHHCCCCCE-----ECCHHHHHHHHHHHHHC---C-CCCEEEEEEECCCEEEEEEEECCCCCCHH------H T ss_conf 66589899977189776-----55889999999865544---8-99889999998987899999899888989------9 Q ss_pred CEEEEEEEEEEECCCCC---CCCCEEEECCCCCHHHHHHHHEEEEEEEEEEC--CCEEEEEEEECCCEECCCEECCCCCC Q ss_conf 70123454520024777---77741563144538898762032126999941--88389999727945113112167677 Q gi|254780222|r 127 KSTLEIILTTLHAGGKF---DNSTYEISGGLHGVGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRN 201 (686) Q Consensus 127 ~~~~Elif~~L~aggnf---dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r--~gk~y~q~f~~g~~~~~~~~i~~~~~ 201 (686) + .++ +.-|+-||. +|-...-|.|..|.+++....+|. +++.+.. +...|...|.+|........ +.. T Consensus 74 l---~~~-~~~~~tSK~~~~~dl~~~~t~GfRGeAL~sI~~~s~-~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~---~~~ 145 (348) T 3na3_A 74 L---DIV-CERFTTSKLQSFEDLASISTYGFRGEALASISHVAH-VTITTKTADGKCAYRASYSDGKLKAPPKP---CAG 145 (348) T ss_dssp G---GTT-TSTTCCSSCCCC---------CCTTCHHHHHHHSSE-EEEEEECTTCSSEEEEEEETTEESSCCEE---ECC T ss_pred H---HHH-HHCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCC-EEEEEECCCCCCCCEEEEECCCCEEECCC---CCC T ss_conf 9---999-752457677875542210266632899999985177-49996125676461799806862340442---346 Q ss_pred CCCEEEEE------EECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 88539999------98424320012222899999888875305773599951645 Q gi|254780222|r 202 KRGTRITF------RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 (686) Q Consensus 202 k~GT~ItF------~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~ 250 (686) ..||+|+. .|=...|-.........+...++..|..+|.+.+.+..+.. T Consensus 146 ~~GTtV~V~nLF~n~PvRrk~lk~~~~e~~~i~~~i~~~AL~~p~I~F~l~~~gk 200 (348) T 3na3_A 146 NQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGE 200 (348) T ss_dssp CSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTC T ss_pred CCCCEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCE T ss_conf 7765798700226752555312581899999999999986259996499999999 No 21 >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Probab=99.00 E-value=4.7e-10 Score=86.79 Aligned_cols=163 Identities=20% Similarity=0.291 Sum_probs=94.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEECC---CC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC Q ss_conf 7775502202443666678777-61899769999828---98---39999669843444176657870123454520024 Q gi|254780222|r 68 GTDEKALHHLFSEVIDNAMDEV-IAGYANLIEVSLDG---NG---FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 (686) Q Consensus 68 st~~~GL~~i~~EIldNavDe~-~~g~~~~I~V~i~~---dg---~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag 140 (686) ++..++||+.+.|+|+||+|.. ..+++..|.|+|+. ++ +|+|.|||.|||-+- .+.+|+..+++ T Consensus 26 ~~~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e~---------l~~~f~~f~~s 96 (530) T 2zbk_B 26 PNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE---------VPNAFGRVLYS 96 (530) T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGG---------SHHHHTSCCCS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHH---------HHHHHHHHCCC T ss_conf 854656999999999999988872589883599999834899578999996289899999---------99986420347 Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCC--EEEEEEEEC----CCEECC-CEECCCCCCCCCEEEE Q ss_conf 77777741563144538898762032-----12699994188--389999727----945113-1121676778853999 Q gi|254780222|r 141 GKFDNSTYEISGGLHGVGISVVNALS-----DELHVTVARQN--TIFSQKFSR----GIPLSP-LEKKEKVRNKRGTRIT 208 (686) Q Consensus 141 gnfdd~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~g--k~y~q~f~~----g~~~~~-~~~i~~~~~k~GT~It 208 (686) ++.....+ .|..|+|.+.+..|| ....|++...+ ..|...+.. +.+... ...+........+.++ T Consensus 97 ~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (530) T 2zbk_B 97 SKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVA 173 (530) T ss_dssp CCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEE T ss_pred CCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEEEE T ss_conf 76453244---786544589999999980597599999458996489983344356676534578665035677731466 Q ss_pred EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 998424320012222899999888875305773599951 Q gi|254780222|r 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686) Q Consensus 209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686) -......+ .....+...++..+..++.+.+.+.. T Consensus 174 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (530) T 2zbk_B 174 ISIPGDWP-----KAKSRIYEYIKRTYIITPYAEFIFKD 207 (530) T ss_dssp EEEECCHH-----HHHHHHHHHHHHHHHHCTTCCEEEEC T ss_pred EECCCHHH-----HHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 50000555-----55555899999876328886389973 No 22 >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Probab=98.97 E-value=9e-09 Score=78.01 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=105.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC--- Q ss_conf 5502202443666678777618997699998289--83999966984344417665787012345452002477777--- Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN--GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN--- 145 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d--g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd--- 145 (686) ...+...+.|+|.||+|- .|++|.|.++.. ..|.|.|||.||+.+ ++ .++ +.-|+-||... T Consensus 22 I~~~~~~vkELveNSiDA----~At~I~I~v~~~g~~~I~V~DnG~GI~~~------dl---~~~-~~r~~TSK~~~~~d 87 (333) T 1b63_A 22 VERPASVVKELVENSLDA----GATRIDIDIERGGAKLIRIRDNGCGIKKD------EL---ALA-LARHATSKIASLDD 87 (333) T ss_dssp CSSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGG------GH---HHH-HSTTCCSSCCSHHH T ss_pred ECCHHHHHHHHHHHHCCC----CCCEEEEEEECCCEEEEEEEECCCCCCHH------HH---HHH-HHHHCCCCCCCHHH T ss_conf 547899999998630278----98989999987976599999899676876------88---887-66410577899788 Q ss_pred CCEEEECCCCCHHHHHHHHEEEEEEEEEECC--CEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE----ECH--HHEE Q ss_conf 7415631445388987620321269999418--8389999727945113112167677885399999----842--4320 Q gi|254780222|r 146 STYEISGGLHGVGISVVNALSDELHVTVARQ--NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR----PDP--KIFG 217 (686) Q Consensus 146 ~~yk~sgGlnGvGaklvNalS~~f~Vev~r~--gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~----PD~--~iFg 217 (686) -.--.|-|-.|-..+.....|. ++|.+... ..-|...+..+....+ ...+....||+|+-. .-+ ..|- T Consensus 88 l~~~~t~GFRGEAL~Si~~vs~-l~I~sr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~GTtV~V~~LF~n~PvRrk~l 163 (333) T 1b63_A 88 LEAIISLGFRGEALASISSVSR-LTLTSRTAEQQEAWQAYAEGRDMNVT---VKPAAHPVGTTLEVLDLFYNTPARRKFL 163 (333) T ss_dssp HHTCCSSCCSSCHHHHHHTTSE-EEEEEECTTCSSEEEEEEETTTTEEE---EEEECCCSEEEEEEESTTTTCHHHHHTC T ss_pred HHHHHHCCCCHHHHHHHHHHCC-CEEEEECCCCCCEEEEEEECCCCCCC---EEECCCCCCCEEEECHHHCCCHHHHHHC T ss_conf 5566522755079999998508-54433428988449999954776444---0253689996899604327385777525 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 01222289999988887530577359995164 Q gi|254780222|r 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 218 ~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) ....-....+.+.+...|..+|.+.+.+..+. T Consensus 164 ~~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~~ 195 (333) T 1b63_A 164 RTEKTEFNHIDEIIRRIALARFDVTINLSHNG 195 (333) T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 88488899999999873326884799999788 No 23 >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Probab=98.19 E-value=4.6e-05 Score=52.56 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=91.9 Q ss_pred HHHHHHHHHHH--HHC-----CC-------CCEEEEEECC-CCEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEE-ECC Q ss_conf 44366667877--761-----89-------9769999828-9839999669843444-176657870123454520-024 Q gi|254780222|r 78 FSEVIDNAMDE--VIA-----GY-------ANLIEVSLDG-NGFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTL-HAG 140 (686) Q Consensus 78 ~~EIldNavDe--~~~-----g~-------~~~I~V~i~~-dg~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L-~ag 140 (686) +.|+|.||+|- +++ ++ -=.|.|+.|+ +++++|.|||-|+--+ ++ + -+|+. ++| T Consensus 31 lRELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~D~GiGMt~~e~~-~---------~lgtIa~Sg 100 (677) T 2cg9_A 31 LRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI-N---------NLGTIAKSG 100 (677) T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH-G---------GGSSSSSCT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH-H---------HHHHHHHHH T ss_conf 998886299999999988536912116788606999975888989999518888999999-9---------877771142 Q ss_pred CC-C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEE-CCCCCCCCCEEEEEEECH Q ss_conf 77-7----7774156314453889876203212699994188-389999727945113112-167677885399999842 Q gi|254780222|r 141 GK-F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEK-KEKVRNKRGTRITFRPDP 213 (686) Q Consensus 141 gn-f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~-i~~~~~k~GT~ItF~PD~ 213 (686) +. | ......--.|+-|||.-.+=..+.+.+|.+...+ ..+...|..+-. ..... .......+||+|+..|.. T Consensus 101 t~~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~GT~I~L~lk~ 179 (677) T 2cg9_A 101 TKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGS-FTVTLDEVNERIGRGTILRLFLKD 179 (677) T ss_dssp THHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSE-EEEEECCSSCCCSSEEEEEEEECT T ss_pred HHHHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEECCCCCCCEEEEECCCC-EEEEEECCCCCCCCCEEEEEEECC T ss_conf 5999998545786012304761014678861637999706888872799963897-079840345567772489999378 Q ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 432001222289999988887530577359995164 Q gi|254780222|r 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) +- .--++...|...++..+-..+ ..|.+.+.+ T Consensus 180 ~~---~e~~~~~~l~~ii~kys~fi~-~PI~l~~~~ 211 (677) T 2cg9_A 180 DQ---LEYLEEKRIKEVIKRHSEFVA-YPIQLVVTK 211 (677) T ss_dssp TG---GGGGCHHHHHHHHHHHSTTCS-SCEEECCCC T ss_pred CH---HHHHHHHHHHHHHHHHCCCCC-CCEEEEECC T ss_conf 77---877508899999998435777-666984135 No 24 >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Probab=98.09 E-value=3.1e-05 Score=53.77 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=93.2 Q ss_pred HHHHHHHHHHH--HHC-----C-------CCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC Q ss_conf 44366667877--761-----8-------997699998289-839999669843444-1766578701234545200247 Q gi|254780222|r 78 FSEVIDNAMDE--VIA-----G-------YANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 78 ~~EIldNavDe--~~~-----g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg 141 (686) +.|+|.||+|- +++ + +--.|.|++|++ ++++|.|||-|+--+ ++ +-+=|.-++|+ T Consensus 50 lRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~DnGIGMt~~El~---------~~LgtIa~Sgt 120 (666) T 2o1u_A 50 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELV---------KNLGTIAKSGT 120 (666) T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH---------HHTTC------ T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHHHHHH T ss_conf 998987499999999998635820027888846999865989989999538888999999---------87232301328 Q ss_pred C-----C-----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEEEECCCEECCCEECCCCCCCCCEEEEEE Q ss_conf 7-----7-----777415631445388987620321269999418-8389999727945113112167677885399999 Q gi|254780222|r 142 K-----F-----DNSTYEISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 (686) Q Consensus 142 n-----f-----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~ 210 (686) . + +...-.--.|.-|||.=.|=..|.+.+|.+... ...|..++. |-..............+||+|+-. T Consensus 121 ~~fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~W~s~-g~~~~~~~~~~~~~~~~GT~I~L~ 199 (666) T 2o1u_A 121 SEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESD-SNEFSVIADPRGNTLGRGTTITLV 199 (666) T ss_dssp -------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEES-SSCCEEEECTTCCSSSSEEEEEEE T ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEC-CCCCEEECCCCCCCCCCCEEEEEE T ss_conf 9999998742101231033340577451134278679999985488775058935-898357456655666897389997 Q ss_pred ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 842432001222289999988887530577359995164 Q gi|254780222|r 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) +..+- .--++...|...++..+-..| ..|.+.+++ T Consensus 200 lk~~~---~e~l~~~~i~~li~kYs~fi~-~PI~l~~~~ 234 (666) T 2o1u_A 200 LKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK 234 (666) T ss_dssp ECTTT---TTSSSTTHHHHHHHHHSTTCC-SCEEEEECC T ss_pred ECCCH---HHHCCHHHHHHHHHHHCCCCC-CCEEEECCC T ss_conf 05501---434119999999997413677-776983044 No 25 >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A Probab=98.05 E-value=6.9e-05 Score=51.34 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHH--H------------CCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC Q ss_conf 2443666678777--6------------18997699998289-8399996698434441766578701234545200247 Q gi|254780222|r 77 LFSEVIDNAMDEV--I------------AGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 77 i~~EIldNavDe~--~------------~g~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg 141 (686) .+.|+|.||+|-- + .++--.|.|+.|++ ..++|.|||-|+--+.-.+ -|+..-.|| T Consensus 30 flRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~~---------~L~ti~~S~ 100 (220) T 2wer_A 30 FLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELIN---------NLGTIAKSG 100 (220) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHH---------HTTTSCCTT T ss_pred EHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCEEEEECCCCEECHHHHHH---------HHHHHHCCC T ss_conf 18788867999999999986459501125788458998538887799961873113899876---------544340334 Q ss_pred -C-C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCE-ECCCEECCCCCCCCCEEEEEEECH Q ss_conf -7-7----7774156314453889876203212699994188-389999727945-113112167677885399999842 Q gi|254780222|r 142 -K-F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDP 213 (686) Q Consensus 142 -n-f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~-~~~~~~i~~~~~k~GT~ItF~PD~ 213 (686) + | ..+...---|+-|||.=.+=..+.+.+|.+...+ ..|..+|...-. .... ........+||+|+..+.. T Consensus 101 t~~~~~~~~~~~~~~~IGqFGIGfyS~FmVad~V~V~Tr~~~~~~~~W~~~~dg~~~i~~-~~~~~~~~~GT~I~L~lk~ 179 (220) T 2wer_A 101 TKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL-DEVNERIGRGTILRLFLKD 179 (220) T ss_dssp HHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE-CSSSCCCSSEEEEEEEECT T ss_pred CHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEECCCCCEEEEE-ECCCCCCCCCEEEEEEECC T ss_conf 377775301365413035310047788863176999983599863057851799769998-1147767987799999684 Q ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 432001222289999988887530577359995164 Q gi|254780222|r 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) +-- + -++...|...++..+-.. ...|.+.+++ T Consensus 180 d~~-e--~l~~~~l~~likkys~fi-~~PI~l~~~~ 211 (220) T 2wer_A 180 DQL-E--YLEEKRIKEVIKRHSEFV-AYPIQLVVTK 211 (220) T ss_dssp TCG-G--GGCHHHHHHHHHHHCTTC-CSCEEECCCC T ss_pred CHH-H--HCCHHHHHHHHHHHHHCC-CCCEEEEECC T ss_conf 488-7--659889999999987486-8576993357 No 26 >1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ... Probab=98.00 E-value=6.2e-05 Score=51.65 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=102.0 Q ss_pred CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH--HC------------CCCCEEEEEECCC-CEE Q ss_conf 36975602311210343269815467775502202443666678777--61------------8997699998289-839 Q gi|254780222|r 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV--IA------------GYANLIEVSLDGN-GFL 107 (686) Q Consensus 43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~--~~------------g~~~~I~V~i~~d-g~I 107 (686) .++++- .+|=+++... -| ++. .-.+.|+|.||+|-- ++ ++--.|.|.++.+ ..+ T Consensus 21 ~Fqae~----~~ll~ll~~s-LY---S~k---eiFLRELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl 89 (236) T 1uyl_A 21 AFQAEI----AQLMSLIINT-FY---SNK---EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTL 89 (236) T ss_dssp ECCHHH----HHHHHHHHHS-CC---SCT---THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEE T ss_pred EEEHHH----HHHHHHHHHC-CC---CCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE T ss_conf 640448----7799998533-68---997---211999986799999999999745940015677737999986988789 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC-----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEE Q ss_conf 999669843444176657870123454520024777-----7774156314453889876203212699994188-3899 Q gi|254780222|r 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFS 181 (686) Q Consensus 108 sV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnf-----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~ 181 (686) +|.|||-|+--+.-.++ +=+..++|..- ++....--.|+-|||.-.+=..+.+.+|.+...+ ..|. T Consensus 90 ~I~DnGiGMt~~el~~~--------LgtIa~Sgt~~f~~~~~~~~d~~~IGqFGVGFyS~FmVad~V~V~Tk~~~~~~~~ 161 (236) T 1uyl_A 90 TIVDTGIGMTKADLINN--------LGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYA 161 (236) T ss_dssp EEEECSCCCCHHHHHTG--------GGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEE T ss_pred EEEECCCCCCHHHHHHH--------HHHHHHCCCHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCEEEEEECCCCCCCCE T ss_conf 99968977578999987--------2234303619999875501561222111521354023467689997469876430 Q ss_pred EEEECCCEECCCEECCCCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99727945113112167677885399999842432001222289999988887530577359995164 Q gi|254780222|r 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 182 q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) ..|..+ ..-...........+||+|+-.+..+- .+ -.+...|...++..+...+ ..|.+++++ T Consensus 162 w~s~g~-g~~~i~~~~~~~~~~GT~I~L~lk~d~-~e--fl~~~~i~~iikkys~fi~-~PI~l~~~~ 224 (236) T 1uyl_A 162 WESSAG-GSFTVRTDTGEPMGRGTKVILHLKEDQ-TE--YLEERRIKEIVKKHSQFIG-YPITLFVEK 224 (236) T ss_dssp EEECST-TEEEEEECCSSCCSSEEEEEEEECGGG-GG--GGSHHHHHHHHHHHCTTCS-SCEEECCC- T ss_pred EEECCC-CCEEEEEECCCCCCCCCEEEEEECCCH-HH--HHCHHHHHHHHHHHHHCCC-CCEEEECCC T ss_conf 781378-873798504555676617999847776-88--7198999999999864668-686995067 No 27 >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Probab=97.90 E-value=0.00013 Score=49.40 Aligned_cols=160 Identities=19% Similarity=0.269 Sum_probs=93.1 Q ss_pred HHHHHHHHHHHHH--HH-----C-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC Q ss_conf 0244366667877--76-----1-------8997699998289-839999669843444176657870123454520024 Q gi|254780222|r 76 HLFSEVIDNAMDE--VI-----A-------GYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 (686) Q Consensus 76 ~i~~EIldNavDe--~~-----~-------g~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag 140 (686) -.+.|+|.||+|- ++ . ++.-.|.|..+.+ ++++|.|||-|+--+.-.+ -+|+.-.| T Consensus 71 IFLRELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~~---------~lgtIa~S 141 (264) T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN---------NLGTIAKS 141 (264) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH---------HHHSCTTS T ss_pred EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH---------HCCCHHCC T ss_conf 008888857999999999986539522467987369998768888899996898777999997---------61650014 Q ss_pred CC--C----CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEEEEECH Q ss_conf 77--7----7774156314453889876203212699994188-389999727945113112167677885399999842 Q gi|254780222|r 141 GK--F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 (686) Q Consensus 141 gn--f----dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~PD~ 213 (686) |. | .+....--.|+-|||.-.|=..+.+.+|.+...+ ..+...|..+-.- ........+..+||+|+-.+.. T Consensus 142 g~~~f~~~~~~~~d~~~IGqFGVGFyS~FMVAdkV~V~Trs~~~~~~~w~s~~~g~~-~~~~~~~~~~~~GT~I~L~Lk~ 220 (264) T 1yc1_A 142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTDTGEPMGRGTKVILHLKE 220 (264) T ss_dssp CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEECCSSCCSSEEEEEEEECG T ss_pred CCHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECCCE-EEEECCCCCCCCCCEEEEEECC T ss_conf 638889875402564400001522122023477579997589986443786406872-7996777889999489999688 Q ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 432001222289999988887530577359995164 Q gi|254780222|r 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) +- .+ -++.+.|...++..+-..+ ..|.+.+++ T Consensus 221 d~-~E--fle~~rl~~lIkkYS~fI~-~PI~l~~e~ 252 (264) T 1yc1_A 221 DQ-TE--YLEERRIKEIVKKHSQFIG-YPITLFVEK 252 (264) T ss_dssp GG-GG--GGSHHHHHHHHHHHTTTCS-SCEEECCCC T ss_pred CH-HH--HCCHHHHHHHHHHHHHCCC-CCEEEEECC T ss_conf 72-78--6699899999998763668-686996067 No 28 >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Probab=97.75 E-value=0.00051 Score=45.40 Aligned_cols=155 Identities=21% Similarity=0.195 Sum_probs=90.2 Q ss_pred HHHHHHHHHHHH--HC------------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC Q ss_conf 443666678777--61------------8997699998289-839999669843444-1766578701234545200247 Q gi|254780222|r 78 FSEVIDNAMDEV--IA------------GYANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 78 ~~EIldNavDe~--~~------------g~~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg 141 (686) +.|+|.||+|-. ++ +.--.|.|+++++ ++++|.|||-|+--+ ++ +-.-|...+|+ T Consensus 32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~---------~~lgtIa~Sgt 102 (559) T 1y4s_A 32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI---------DHLGTIAKSGT 102 (559) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHHH---------HHHSCCSCCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHEEHHH T ss_conf 888887299999999998614931007898827999973889989999628889999999---------85113253518 Q ss_pred C-C------CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC----EEEEEEEECCCEECCCEECCCCCCCCCEEEEEE Q ss_conf 7-7------7774156314453889876203212699994188----389999727945113112167677885399999 Q gi|254780222|r 142 K-F------DNSTYEISGGLHGVGISVVNALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 (686) Q Consensus 142 n-f------dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g----k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~ 210 (686) + | +.....--.|.-|||.-.+=..+.+.+|.+...| ..|.-+...+ ..-.+... ....+||+|+.. T Consensus 103 ~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa~~V~V~tr~~~~~~~~~~~w~~~g~-~~~~~~~~--~~~~~GT~I~L~ 179 (559) T 1y4s_A 103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE-GEYTVADI--TKEDRGTEITLH 179 (559) T ss_dssp CCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSS-SEEEEEEE--CCCSCEEEEEEE T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC-CCEEECCC--CCCCCCEEEEEE T ss_conf 999998453125544545532100124554466799997227877774379997798-62584467--777787478740 Q ss_pred ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 84243200122228999998888753057735999516 Q gi|254780222|r 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 (686) Q Consensus 211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~ 248 (686) +-.+- . --.+.+.|...++..+-..+ ..|.+.++ T Consensus 180 lk~~~-~--efl~~~~l~~li~kys~fi~-~PI~l~~~ 213 (559) T 1y4s_A 180 LREGE-D--EFLDDWRVRSIISKYSDHIA-LPVEIEKR 213 (559) T ss_dssp ECTTC-G--GGSCHHHHHHHHHHHHTTCS-SCEEEEEE T ss_pred ECCCH-H--HHHHHHHHHHHHHHHCCCCC-CCEEEEEC T ss_conf 05546-7--66317899999986040446-66375440 No 29 >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A* Probab=97.72 E-value=0.0012 Score=42.74 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=89.0 Q ss_pred HHHHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECC Q ss_conf 02443666678777--6-----18-------997699998289-839999669843444176657870123454520024 Q gi|254780222|r 76 HLFSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 (686) Q Consensus 76 ~i~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~ag 140 (686) -.+.|+|.||+|-. + .+ +--.|.|..+++ ..++|.|||-|+--+.- .--|++.-.| T Consensus 35 vfLRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el---------~~~lgtIa~S 105 (236) T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL---------VKNLGTIAKS 105 (236) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH---------HHHHHCC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHH---------HHHHHHHHHC T ss_conf 2099998789999999999966494100467771699976588888999845522159999---------8876766621 Q ss_pred C-C-CC---------CCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEE Q ss_conf 7-7-77---------774156314453889876203212699994188-3899997279451131121676778853999 Q gi|254780222|r 141 G-K-FD---------NSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 (686) Q Consensus 141 g-n-fd---------d~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~It 208 (686) | . |- +....---|+-|||.-.+=..+.+.+|.+...+ ..|..+ ++|...............+||+|+ T Consensus 106 gt~~f~~~~~~~~~~~~~~~~lIGqFGVGFyS~FmVAd~V~V~sr~~~~~~~~W~-s~g~~~~~i~~~~~~~~~~GT~I~ 184 (236) T 2gqp_A 106 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWE-SDSNEFSVIADPRGNTLGRGTTIT 184 (236) T ss_dssp ------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEE-ESSSCEEEEECTTCSCSSSEEEEE T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECEEEEEEECCCCCCCEEE-ECCCCCEEEECCCCCCCCCCEEEE T ss_conf 4288887655320034531113532572305767330559999821678774599-458871797313577789984999 Q ss_pred EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99842432001222289999988887530577359995164 Q gi|254780222|r 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) ..+-.+- .--++...|...++..+-.. ...|.+.+++ T Consensus 185 L~lk~~~---~e~l~~~~l~~li~kys~fi-~~PI~l~~~k 221 (236) T 2gqp_A 185 LVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 221 (236) T ss_dssp EEECGGG---GGGGCHHHHHHHHHHHHTTC-SSCEEEEEEC T ss_pred EEECCCC---HHHCCHHHHHHHHHHHHHCC-CCCEEECCCC T ss_conf 9988877---45579999999999986187-8797976444 No 30 >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Probab=97.71 E-value=0.0005 Score=45.47 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=91.7 Q ss_pred HHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-CCC Q ss_conf 443666678777--6-----18-------997699998289-8399996698434441766578701234545200-247 Q gi|254780222|r 78 FSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH-AGG 141 (686) Q Consensus 78 ~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~-agg 141 (686) +.|+|.||+|-. + .+ ..-.|.|.+|++ +.++|.|||-|+--+--.+ -+|+.- +|. T Consensus 51 LRELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~~~~l~I~DnGIGMt~~el~~---------~LgtIa~Sgt 121 (281) T 3peh_A 51 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLIN---------NLGTIAKSGT 121 (281) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH---------HHHHHHHSCH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHH---------HHHHHCCCCH T ss_conf 7778867999999999997369211178876269988739999899997981567899997---------7533134343 Q ss_pred -CCC-----CCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECC-CCCCCCCEEEEEEECH Q ss_conf -777-----774156314453889876203212699994188-38999972794511311216-7677885399999842 Q gi|254780222|r 142 -KFD-----NSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDP 213 (686) Q Consensus 142 -nfd-----d~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~-~~~~k~GT~ItF~PD~ 213 (686) .|. .+...--.|+-|||.-.+=..|.+.+|.+...+ ..|...|+.+- .-...... .....+||+|+..+.. T Consensus 122 ~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAdkV~V~Tk~~~~~~~~w~s~~~g-~yti~~~~~~~~~~rGT~I~L~Lk~ 200 (281) T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADA-KFTIYKDPRGATLKRGTRISLHLKE 200 (281) T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTS-CEEEEECTTCSTTSSEEEEEEEECG T ss_pred HHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCC-CCEEEECCCCCCCCCCEEEEEEECC T ss_conf 888876441255233443203122677640677999954799762089997899-8678643556556776389998566 Q ss_pred HHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 4320012222899999888875305773599951645 Q gi|254780222|r 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 (686) Q Consensus 214 ~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~ 250 (686) +- .+ -.+...|...++..+-.. ...|.+++++. T Consensus 201 d~-~e--fl~~~~l~~likkys~fi-~~PI~l~~e~~ 233 (281) T 3peh_A 201 DA-TN--LLNDKKLMDLISKYSQFI-QFPIYLLHENV 233 (281) T ss_dssp GG-GG--GGSHHHHHHHHHHHTTTC-CSCEEEEEEEE T ss_pred HH-HH--HHCHHHHHHHHHHHCCCC-CCCEEEEEECC T ss_conf 06-76--619999999999841476-76769701125 No 31 >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Probab=97.66 E-value=0.00036 Score=46.46 Aligned_cols=154 Identities=21% Similarity=0.203 Sum_probs=90.5 Q ss_pred HHHHHHHHHHHH--HC-----CC-------CCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEEEECCC Q ss_conf 443666678777--61-----89-------97699998289-839999669843444-1766578701234545200247 Q gi|254780222|r 78 FSEVIDNAMDEV--IA-----GY-------ANLIEVSLDGN-GFLTVVDNGRGIPVE-NHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 78 ~~EIldNavDe~--~~-----g~-------~~~I~V~i~~d-g~IsV~ddGrGIPv~-~h~k~~~~~~~Elif~~L~agg 141 (686) +.|+|.||+|-. ++ ++ -=.|.|+++++ ++++|.|||=|+--+ +| +-+=|.-++|+ T Consensus 32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~i~DnGiGMt~~el~---------~~LgtIa~Sgt 102 (624) T 2ioq_A 32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVI---------DHLGTIAKSGT 102 (624) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH---------HHHHHHCC--- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH---------HHHHHHHHHHH T ss_conf 999987299999999998715913107888846999975988989999538888999999---------87667602417 Q ss_pred C-C----C-CCCEEE-ECCCCCHHHHHHHHEEEEEEEEEECCC----EEEEEEEECCCEECCCEECCCCCCCCCEEEEEE Q ss_conf 7-7----7-774156-314453889876203212699994188----389999727945113112167677885399999 Q gi|254780222|r 142 K-F----D-NSTYEI-SGGLHGVGISVVNALSDELHVTVARQN----TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 (686) Q Consensus 142 n-f----d-d~~yk~-sgGlnGvGaklvNalS~~f~Vev~r~g----k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~ 210 (686) + | . +..... -.|.-|||.=.|=..+.+.+|.+...+ ..|..+. +|...-..... ....+||+|+-. T Consensus 103 ~~f~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~srs~~~~~~~~~~w~~-~g~~~~~i~~~--~~~~~GT~I~L~ 179 (624) T 2ioq_A 103 KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWES-AGEGEYTVADI--TKEDRGTEITLH 179 (624) T ss_dssp ------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEE-CSSSCCEEEEE--CCSSSEEEEEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEE-CCCCCEEECCC--CCCCCCCEEEEE T ss_conf 999998664102443435423212000133378799997226887764179995-79871364467--767875069973 Q ss_pred ECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 8424320012222899999888875305773599951 Q gi|254780222|r 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686) Q Consensus 211 PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686) |..+ .. --++.+.|...++..+-.. ...|.+.. T Consensus 180 lk~d-~~--e~l~~~~i~~li~kYs~fi-~~PI~l~~ 212 (624) T 2ioq_A 180 LREG-ED--EFLDDWRVRSIISKYSDHI-ALPVEIEK 212 (624) T ss_dssp ECTT-CG--GGGCHHHHHHHHHHHHTTC-SSCEEEEE T ss_pred ECCC-HH--HHHHHHHHHHHHHHCCCCC-CCCEEEEE T ss_conf 1650-67--6642999999898526577-87748764 No 32 >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Probab=97.63 E-value=3.7e-05 Score=53.23 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=53.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC------CCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC Q ss_conf 55022024436666787776189------97699998289-8--399996698434441766578701234545200247 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGY------ANLIEVSLDGN-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~------~~~I~V~i~~d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg 141 (686) +.-|.+++.|+|.||++-...++ ...|.|++..+ . .|+|.|+|.|||-+.-+ .++- --||.--++. T Consensus 236 p~~L~~il~NLL~NAikat~e~~~~~~~~~p~I~v~i~~~~~~v~I~I~D~G~GIp~e~l~---~IF~--~fyTT~~~~~ 310 (388) T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLD---RVMD--YHFTTAEAST 310 (388) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTT---TTTS--TTCCCC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCHHHHH---HHCC--CCCCCCCCCC T ss_conf 8999999999999999997716755577788479999715886999998699987999998---7627--5524676555 Q ss_pred ------------CCCCCCEEEECCCCCHHHHHHHHEEEEE Q ss_conf ------------7777741563144538898762032126 Q gi|254780222|r 142 ------------KFDNSTYEISGGLHGVGISVVNALSDEL 169 (686) Q Consensus 142 ------------nfdd~~yk~sgGlnGvGaklvNalS~~f 169 (686) .+.+....-.-+=.|+|..++..+.+.| T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~isr~~ae~~ 350 (388) T 1gkz_A 311 QDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL 350 (388) T ss_dssp ---------------------CCSCSSCHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHC T ss_conf 5543333212111135566789888704499999999986 No 33 >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7} Probab=97.62 E-value=0.00054 Score=45.24 Aligned_cols=129 Identities=18% Similarity=0.257 Sum_probs=72.7 Q ss_pred EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC------CCCCEEEECCCCCHHHHHHHHEEEE Q ss_conf 699998289-839999669843444176657870123454520024777------7774156314453889876203212 Q gi|254780222|r 96 LIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF------DNSTYEISGGLHGVGISVVNALSDE 168 (686) Q Consensus 96 ~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnf------dd~~yk~sgGlnGvGaklvNalS~~ 168 (686) .|+|++|++ +.++|.|||-|+--+--.++ +-|.-++|.+- ++....--.|.-|||.-.+=..+.+ T Consensus 120 ~I~I~~Dk~~~tltI~DnGIGMt~~el~~~--------LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGVGFySaFmVAdk 191 (272) T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELINN--------LGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNR 191 (272) T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHHH--------TTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEE T ss_pred EEEEEECCCCCEEEEEECCEEECHHHHHHH--------HCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCE T ss_conf 499887587898999943323428999877--------355564653999986421444322012357541788876068 Q ss_pred EEEEEECCCEEEEEEEEC-C-CEECCCEECC---CCCCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHH Q ss_conf 699994188389999727-9-4511311216---76778853999998424320012222899999888875 Q gi|254780222|r 169 LHVTVARQNTIFSQKFSR-G-IPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235 (686) Q Consensus 169 f~Vev~r~gk~y~q~f~~-g-~~~~~~~~i~---~~~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A 235 (686) .+|.+..+...|..+... | ....+.++.. .....+||+|+..+-.+- .+ -.+...|...++..+ T Consensus 192 V~V~Tk~~~~~~~W~S~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~Lked~-~e--fl~~~~lk~lIkkYs 260 (272) T 3ied_A 192 VEVYTKKEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEEC-DE--YLEDYKLKELIKKYS 260 (272) T ss_dssp EEEEEESSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGG-GG--GGSHHHHHHHHHHHC T ss_pred EEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCH-HH--HCCHHHHHHHHHHHH T ss_conf 9999757884168875599856886443345555677999708999989770-67--659889999999886 No 34 >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Probab=97.62 E-value=1.7e-05 Score=55.47 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=57.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCC-----CEEEEEECCC---CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC Q ss_conf 550220244366667877761899-----7699998289---83999966984344417665787012345452002477 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGYA-----NLIEVSLDGN---GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~~-----~~I~V~i~~d---g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn 142 (686) +.-|++++.++|.||++-...++. ..|.|++..+ -.|+|.|+|.|||-+. .+-||...++..+ T Consensus 229 p~~L~qIl~NLl~NAikat~e~~~~~~~~~~I~V~i~~~~~~v~I~V~D~G~GI~~e~---------l~~IF~~fytt~~ 299 (394) T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRK---------IERLFSYMYSTAP 299 (394) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH---------HHHHTCTTTTCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCHHH---------HHHHCCCCCCCCC T ss_conf 9999999999999999987620356888870799998579789999988999989899---------9987387621678 Q ss_pred CCCCCEEEECC----CCCHHHHHHHHEEEEE Q ss_conf 77774156314----4538898762032126 Q gi|254780222|r 143 FDNSTYEISGG----LHGVGISVVNALSDEL 169 (686) Q Consensus 143 fdd~~yk~sgG----lnGvGaklvNalS~~f 169 (686) -... -+|| -.|+|.+++..+-+.+ T Consensus 300 ~~~~---~~~~~~~~G~GLGL~isk~~~~~h 327 (394) T 2btz_A 300 TPQP---GTGGTPLAGFGYGLPISRLYAKYF 327 (394) T ss_dssp -----------------CCHHHHHHHHHHHT T ss_pred CCCC---CCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 7777---778888898150199999999986 No 35 >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Probab=97.58 E-value=2.9e-05 Score=53.92 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=59.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEECCC---CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC Q ss_conf 55022024436666787776189-----97699998289---83999966984344417665787012345452002477 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGY-----ANLIEVSLDGN---GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~-----~~~I~V~i~~d---g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn 142 (686) +.-|++++.|+|.||+.-.+.++ ...|.|++..+ =.|+|.|+|.|||-+.- +-||..+++..+ T Consensus 241 p~~L~~il~nLLkNA~ratve~~~~~~~~p~I~V~i~~~~~~v~I~IsD~G~GI~~e~l---------~~IF~~fytT~~ 311 (407) T 2q8g_A 241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI---------DRLFNYMYSTAP 311 (407) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH---------GGGGCTTTTCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHHCCCCCCCC T ss_conf 99999999999999999988337668998738999984784799999989989798999---------877155432778 Q ss_pred C---CCCCEEEECCCCCHHHHHHHHEEEEEE Q ss_conf 7---777415631445388987620321269 Q gi|254780222|r 143 F---DNSTYEISGGLHGVGISVVNALSDELH 170 (686) Q Consensus 143 f---dd~~yk~sgGlnGvGaklvNalS~~f~ 170 (686) . +.+.-.-.+| -|+|..++-.+.+.|- T Consensus 312 ~~~~d~~~~~~~~G-~GlGL~isr~~ae~~g 341 (407) T 2q8g_A 312 RPRVETSRAVPLAG-FGYGLPISRLYAQYFQ 341 (407) T ss_dssp CCCSSCCSCCCSSC-TTCHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHHCC T ss_conf 66655556689897-1154999999999879 No 36 >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Probab=97.46 E-value=0.00024 Score=47.60 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=96.0 Q ss_pred CCCHHHEEECCCCHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHH--H-----CC-------CCCEEEEEECCC-CEE Q ss_conf 36975602311210343269815467775502202443666678777--6-----18-------997699998289-839 Q gi|254780222|r 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV--I-----AG-------YANLIEVSLDGN-GFL 107 (686) Q Consensus 43 ~Y~~~~i~~L~glE~VrkRP~mYIGst~~~GL~~i~~EIldNavDe~--~-----~g-------~~~~I~V~i~~d-g~I 107 (686) .++++- .+|=.++.+. +| ++. .-.+-|+|.||+|-. + .. .--.|.|++|++ .++ T Consensus 28 ~Fqae~----~~ll~ll~~s-LY---s~~---~ifLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l 96 (235) T 2ior_A 28 GFQSEV----KQLLHLMIHS-LY---SNK---EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTL 96 (235) T ss_dssp ECCHHH----HHHHHHHHHH-TG---GGT---THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEE T ss_pred EHHHHH----HHHHHHHHCC-CC---CCC---CEEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCEE T ss_conf 520208----7899986064-78---998---645310876599999999998715950105887743688864899889 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC--C-----CCC-CEEEECCCCCHHHHHHHHEEEEEEEEEECCC-- Q ss_conf 99966984344417665787012345452002477--7-----777-4156314453889876203212699994188-- Q gi|254780222|r 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK--F-----DNS-TYEISGGLHGVGISVVNALSDELHVTVARQN-- 177 (686) Q Consensus 108 sV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn--f-----dd~-~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-- 177 (686) +|.|||-|+.-+.-.+ -|++.-.|+. | .+. ...---|+-|||.-.+=..+.+.+|.+.+.+ T Consensus 97 ~I~DnGiGMt~~el~~---------~l~tia~S~~~~f~~~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Trs~~~~ 167 (235) T 2ior_A 97 TISDNGVGMTRDEVID---------HLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEK 167 (235) T ss_dssp EEEECSSCCCHHHHHH---------HHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSC T ss_pred EEEECCCCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC T ss_conf 9997773324788666---------6502202323889875331133441100234500255533067699984466867 Q ss_pred --EEEEEEEECCCEECCCEECCCCCCCCCEEEEEEE--CHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf --3899997279451131121676778853999998--424320012222899999888875305773599951 Q gi|254780222|r 178 --TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP--DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 (686) Q Consensus 178 --k~y~q~f~~g~~~~~~~~i~~~~~k~GT~ItF~P--D~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~ 247 (686) ..|...+... ..-.. ....+..+||+|+..+ |..-| .+.+.|...++..+-.. ...|.+++ T Consensus 168 ~~~~~~w~~~g~-~~~~i--~~~~~~~~GT~I~L~Lked~~ef-----l~~~~lk~iIkkys~fi-~~PI~l~~ 232 (235) T 2ior_A 168 PENGVFWESAGE-GEYTV--ADITKEDRGTEITLHLREGEDEF-----LDDWRVRSIISKYSDHI-ALPVEIEK 232 (235) T ss_dssp GGGEEEEEECSS-SEEEE--EEECCCSCEEEEEEEECTTCGGG-----GCHHHHHHHHHHHTTSC-CSCEEEC- T ss_pred CCCCEEEEECCC-CEEEE--CCCCCCCCCCEEEEEECCCHHHH-----HCHHHHHHHHHHHHHCC-CCCEEECC T ss_conf 661135774588-60550--67888999888999989731766-----49879999999887475-81739654 No 37 >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Probab=97.46 E-value=0.00064 Score=44.69 Aligned_cols=160 Identities=22% Similarity=0.240 Sum_probs=89.7 Q ss_pred HHHHHHHHHHHHHH--HC-----C-------CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-C Q ss_conf 02443666678777--61-----8-------997699998289-8399996698434441766578701234545200-2 Q gi|254780222|r 76 HLFSEVIDNAMDEV--IA-----G-------YANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH-A 139 (686) Q Consensus 76 ~i~~EIldNavDe~--~~-----g-------~~~~I~V~i~~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~-a 139 (686) -.+.|+|.||+|-. ++ + +--.|.|..|++ ..++|.|||-|+--+. +.--|+..- + T Consensus 31 iflRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~e---------l~~~LgtIa~S 101 (269) T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE---------LVKNLGTIAKS 101 (269) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH---------HHHHHHSCCSH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHH---------HHHHHHHHHCC T ss_conf 218889876999999999985549522368888358841268874899982763335999---------99887766310 Q ss_pred CCC-C---------CCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCC-EEEEEEEECCCEECCCEECCCCCCCCCEEEE Q ss_conf 477-7---------7774156314453889876203212699994188-3899997279451131121676778853999 Q gi|254780222|r 140 GGK-F---------DNSTYEISGGLHGVGISVVNALSDELHVTVARQN-TIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 (686) Q Consensus 140 ggn-f---------dd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~g-k~y~q~f~~g~~~~~~~~i~~~~~k~GT~It 208 (686) |.. | ++....---|+-|||.-.+=..+.+..|.+...+ ..|...+ +|-..............+||+|+ T Consensus 102 gt~~f~~~~~~~~~~~~~~~~~iGqFGvGfyS~FmVAd~V~V~sr~~~~~~~~W~s-~g~~~~~~~~~~~~~~~rGT~I~ 180 (269) T 1qy5_A 102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWES-DSNEFSVIADPRGNTLGRGTTIT 180 (269) T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEE-CSSCEEEEECTTCSCSSSEEEEE T ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCEEEE-CCCCCEEEECCCCCCCCCCEEEE T ss_conf 17999986342123443102235325742178898624899997148887767995-79971786156677668864999 Q ss_pred EEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99842432001222289999988887530577359995164 Q gi|254780222|r 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 (686) Q Consensus 209 F~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~ 249 (686) ..+..+- .--.+...|...++..+-.. ...|.+.+++ T Consensus 181 L~Lk~d~---~efl~~~~l~~ii~kys~fi-~~PI~l~~~k 217 (269) T 1qy5_A 181 LVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 217 (269) T ss_dssp EEECGGG---GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC T ss_pred EEECCCH---HHHCCHHHHHHHHHHHHHCC-CCCEEEEEEE T ss_conf 9987714---55369999999999885176-8687994451 No 38 >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Probab=97.33 E-value=0.00073 Score=44.34 Aligned_cols=91 Identities=24% Similarity=0.321 Sum_probs=58.9 Q ss_pred HHHHHHHHHHHHHHHHHCC-CCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEE Q ss_conf 2202443666678777618-99769999828-98--39999669843444176657870123454520024777777415 Q gi|254780222|r 74 LHHLFSEVIDNAMDEVIAG-YANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 (686) Q Consensus 74 L~~i~~EIldNavDe~~~g-~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk 149 (686) +--++.|++.||+..+..+ +...|.|++.. ++ .|+|+|||+|||-... .. +-.++ .+ T Consensus 40 i~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~~~~~-----~~--~~~~~------------~~ 100 (145) T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEE-----AR--QPLFT------------TK 100 (145) T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSCHHH-----HT--CCC---------------- T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHH-----CC--CCCCC------------CC T ss_conf 9999999999998843489999089999999378999999964789585775-----37--87754------------46 Q ss_pred EECCCCCHHHHHHHHEEEEEEEEEECC-CEEEEEE Q ss_conf 631445388987620321269999418-8389999 Q gi|254780222|r 150 ISGGLHGVGISVVNALSDELHVTVARQ-NTIFSQK 183 (686) Q Consensus 150 ~sgGlnGvGaklvNalS~~f~Vev~r~-gk~y~q~ 183 (686) -..+..|+|..++..+...+.++...+ |.....+ T Consensus 101 ~~~~~~GlGL~ii~~l~d~i~i~s~~~~Gt~v~l~ 135 (145) T 1th8_A 101 PELERSGMGFTIMENFMDEVIVESEVNKGTTVYLK 135 (145) T ss_dssp ---CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEE T ss_pred CCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE T ss_conf 79995736899999969999999839996999999 No 39 >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Probab=97.26 E-value=0.00011 Score=50.05 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=57.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-----CCEEEEEECC--C-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCC Q ss_conf 55022024436666787776189-----9769999828--9-83999966984344417665787012345452002477 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGY-----ANLIEVSLDG--N-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~-----~~~I~V~i~~--d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggn 142 (686) +.=|++++.|+|.||++-...++ ...|.|++.. + -.|+|.|+|.|||-+.- +-||.-.++..+ T Consensus 228 p~~L~~il~NLl~NAikat~e~~~~~~~~~~I~v~v~~~~~~v~I~VsD~G~GI~~e~l---------~~IF~~fytt~~ 298 (394) T 2e0a_A 228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRII---------DRLFSYTYSTAP 298 (394) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGH---------HHHTSTTCCSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCC T ss_conf 99999999999999999998638778988728999962799799999966999898999---------876165520787 Q ss_pred C---CCCCEEEECCCCCHHHHHHHHEEEEE Q ss_conf 7---77741563144538898762032126 Q gi|254780222|r 143 F---DNSTYEISGGLHGVGISVVNALSDEL 169 (686) Q Consensus 143 f---dd~~yk~sgGlnGvGaklvNalS~~f 169 (686) . |.+.-+-.|| -|+|.+++..+-+.+ T Consensus 299 ~~~~~~s~~~~~~G-tGlGL~isr~i~~~h 327 (394) T 2e0a_A 299 TPVMDNSRNAPLAG-FGYGLPISRLYAKYF 327 (394) T ss_dssp CC------CCCSSC-SSCHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCC-CCHHHHHHHHHHHHC T ss_conf 56566555689896-137699999999987 No 40 >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Probab=97.25 E-value=0.00026 Score=47.35 Aligned_cols=94 Identities=21% Similarity=0.324 Sum_probs=54.1 Q ss_pred HHHHHHHHHHHHHHHC--CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECC Q ss_conf 0244366667877761--89976999982898399996698434441766578701234545200247777774156314 Q gi|254780222|r 76 HLFSEVIDNAMDEVIA--GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 (686) Q Consensus 76 ~i~~EIldNavDe~~~--g~~~~I~V~i~~dg~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgG 153 (686) ..+..|+.|-++||+. .....|.|++..+ .+.|.|||.|||-+.. +-||-....+.+ +.+.| T Consensus 116 ~~l~~vl~NLl~NAikys~~~~~I~i~~~~~-~~~v~D~G~GI~~e~~---------~~iFe~F~r~~~------~~~~G 179 (222) T 3jz3_A 116 LLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD-NFIVRDNGPGVTPEAL---------ARIGERFYRPPG------QTATG 179 (222) T ss_dssp HHHHHHHHHHHHHHHHTCCTTCEEEEEECSS-EEEEECSCC--------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-EEEECCCCCCCCHHHH---------HHHCCCCCCCCC------CCCCC T ss_conf 9999999999999998689996799999742-4998358999899999---------986179741899------99995 Q ss_pred CCCHHHHHHHHEEEEEEEEE----E-CCCEEEEEEEEC Q ss_conf 45388987620321269999----4-188389999727 Q gi|254780222|r 154 LHGVGISVVNALSDELHVTV----A-RQNTIFSQKFSR 186 (686) Q Consensus 154 lnGvGaklvNalS~~f~Vev----~-r~gk~y~q~f~~ 186 (686) .|+|.++|.-+-+..--++ . ..|..++.+|-. T Consensus 180 -~GLGL~Ivk~iv~~hgG~I~v~s~~~~Gt~f~i~F~E 216 (222) T 3jz3_A 180 -SGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE 216 (222) T ss_dssp ---CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC T ss_pred -CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC T ss_conf -2678999999999839989999779898799999773 No 41 >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Probab=97.22 E-value=8.7e-05 Score=50.66 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=51.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC------CCEEEEEECC--C-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC Q ss_conf 55022024436666787776189------9769999828--9-8399996698434441766578701234545200247 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAGY------ANLIEVSLDG--N-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g~------~~~I~V~i~~--d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~agg 141 (686) +.-|++++.|+|.||+.-...++ .-.|.|++.. + =.|.|.|+|.|||-+.- +.||.-+++.. T Consensus 251 p~~L~qIL~NLL~NAikat~e~~~~~~~~~P~I~V~i~~~~~~v~I~IsD~G~GI~~e~~---------~~IF~~fytt~ 321 (419) T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI---------DRLFNYMYSTA 321 (419) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH---------GGGGCTTTC-- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCC T ss_conf 999999999999989998886523467888707999985696899999879999898999---------87707576268 Q ss_pred CC---CCCCEEEECCCCCHHHHHHHHEEEEE Q ss_conf 77---77741563144538898762032126 Q gi|254780222|r 142 KF---DNSTYEISGGLHGVGISVVNALSDEL 169 (686) Q Consensus 142 nf---dd~~yk~sgGlnGvGaklvNalS~~f 169 (686) .. +.+.-.--+| -|+|..+|-.+-+.+ T Consensus 322 ~~~~~~~~~~~~~~G-~GlGL~isk~~ae~~ 351 (419) T 1y8o_A 322 PRPSLEPTRAAPLAG-FGYGLPISRLYARYF 351 (419) T ss_dssp -----------CC---CTTHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCC-CCHHHHHHHHHHHHC T ss_conf 877655556689896-414199999999986 No 42 >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Probab=97.14 E-value=0.0012 Score=42.96 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=58.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC Q ss_conf 775502202443666678777618997699998289-8--3999966984344417665787012345452002477777 Q gi|254780222|r 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 (686) Q Consensus 69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd 145 (686) .+..-|.+++.-+|+||++-.- ....|.|+...+ + .|+|+|+|.|||-+..+ .+ |--..++ + T Consensus 43 ~D~~~l~qvl~NLi~NAi~~~~--~~~~I~i~~~~~~~~v~i~V~D~G~Gi~~e~~~---~i------Fe~F~t~-k--- 107 (152) T 3a0y_A 43 ADRTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE---KI------FSPFFTT-K--- 107 (152) T ss_dssp ECHHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTT---GG------GSTTCCC-C--- T ss_pred ECHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH---HC------CCCCEEC-C--- T ss_conf 8799999999999999999814--997799999965988999997089998999998---71------6995188-9--- Q ss_pred CCEEEECCCCCHHHHHHHHEE-----EEEEEEEECCCEEEEEEE Q ss_conf 741563144538898762032-----126999941883899997 Q gi|254780222|r 146 STYEISGGLHGVGISVVNALS-----DELHVTVARQNTIFSQKF 184 (686) Q Consensus 146 ~~yk~sgGlnGvGaklvNalS-----~~f~Vev~r~gk~y~q~f 184 (686) ++| .|+|.++|.-+- -...++...+|..|+.++ T Consensus 108 -----~~G-tGLGL~i~k~iv~~~hgg~i~~~~~~~Gt~f~i~l 145 (152) T 3a0y_A 108 -----TQG-TGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEI 145 (152) T ss_dssp -------C-CCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEE T ss_pred -----CCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE T ss_conf -----895-06799999999999589999999669947999995 No 43 >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Probab=97.05 E-value=0.00048 Score=45.58 Aligned_cols=79 Identities=23% Similarity=0.453 Sum_probs=50.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC Q ss_conf 7550220244366667877761899769999828-98--39999669843444176657870123454520024777777 Q gi|254780222|r 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 (686) Q Consensus 70 ~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~ 146 (686) +..-|.+++.-+|+||+.. +....|.|.... ++ .|+|.|||.|||-+.. +-||-....+.+ . T Consensus 43 d~~~l~~vl~NLl~NAiky---~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~~~~---------~~iF~~F~r~~~---~ 107 (150) T 1ysr_A 43 LPAGLRLAVDNAIANAVKH---GGATLVQLSAVSSRAGVEIAIDDNGSGVPEGER---------QVVFERFSRGST---A 107 (150) T ss_dssp CHHHHHHHHHHHHHHHHHT---TCCSEEEEEEEEETTEEEEEEEESSSCCCGGGH---------HHHHTSCC-------- T ss_pred CHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCC---C T ss_conf 9999999999999999974---899789999998099999999984879798999---------985576341799---9 Q ss_pred CEEEECCCCCHHHHHHHHEEE Q ss_conf 415631445388987620321 Q gi|254780222|r 147 TYEISGGLHGVGISVVNALSD 167 (686) Q Consensus 147 ~yk~sgGlnGvGaklvNalS~ 167 (686) + .+| .|+|.++|..+-+ T Consensus 108 --~-~~G-~GLGL~i~k~i~~ 124 (150) T 1ysr_A 108 --S-HSG-SGLGLALVAQQAQ 124 (150) T ss_dssp ----------CCCHHHHHHHH T ss_pred --C-CCC-CCHHHHHHHHHHH T ss_conf --9-896-0779999999999 No 44 >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Probab=96.88 E-value=0.0018 Score=41.61 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=57.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC Q ss_conf 77550220244366667877761899769999828-98--3999966984344417665787012345452002477777 Q gi|254780222|r 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 (686) Q Consensus 69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd 145 (686) .+..-|..++.-+|+||+.-. ...|.|++.. ++ .|+|.|||.|||-+.. +-||--...+.+ T Consensus 43 ~d~~~l~~vl~NLi~NAik~~----~~~I~i~~~~~~~~~~i~V~D~G~GI~~e~~---------~~iF~~F~r~~~--- 106 (161) T 1bxd_A 43 MHPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR---------KHLFQPFVRGDS--- 106 (161) T ss_dssp ECHHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGG---------GCSSCCCCCCSC--- T ss_pred ECHHHHHHHHHHHHHHHHHHC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHH---------HHHHCCCEECCC--- T ss_conf 889999999999999999747----9859999999669899999986755599999---------886588358878--- Q ss_pred CCEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEEE Q ss_conf 7415631445388987620321----26999941-8838999972 Q gi|254780222|r 146 STYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKFS 185 (686) Q Consensus 146 ~~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f~ 185 (686) + +.++| .|+|.++|..+-+ .+.|+... .|..++..|- T Consensus 107 -~-~~~~G-~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP 148 (161) T 1bxd_A 107 -A-RTISG-TGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLP 148 (161) T ss_dssp -C-CCCCC-CSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEEC T ss_pred -C-CCCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEE T ss_conf -8-86888-660799999999987998999973999189999998 No 45 >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Probab=96.84 E-value=0.0053 Score=38.44 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=20.5 Q ss_pred CCCEEEEEEC-CCCEEEEEECCCCCCCCCC Q ss_conf 9976999982-8983999966984344417 Q gi|254780222|r 93 YANLIEVSLD-GNGFLTVVDNGRGIPVENH 121 (686) Q Consensus 93 ~~~~I~V~i~-~dg~IsV~ddGrGIPv~~h 121 (686) +++-.-+.+| .+|.++++|-|.--|.=+. T Consensus 119 f~t~~~~~id~~~~~l~~~~AGhp~~ll~~ 148 (399) T 3ke6_A 119 SATMCVGSLDFTSGEFQYCTAGHPPPLLVT 148 (399) T ss_dssp TCEEEEEEEETTTCEEEEEEESSCCCEEEC T ss_pred CCCCEEEEEECCCCEEEEECCCCCCCEEEC T ss_conf 412559999899997998057699825886 No 46 >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Probab=96.69 E-value=0.0019 Score=41.52 Aligned_cols=96 Identities=20% Similarity=0.392 Sum_probs=55.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC Q ss_conf 7755022024436666787776189976999982--89-83999966984344417665787012345452002477777 Q gi|254780222|r 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD--GN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 (686) Q Consensus 69 t~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~--~d-g~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd 145 (686) .+..-|.+++.-+|+||+.-. ...|.|.+. .+ -.|+|.|||.|||-+..+ . ||-....+.+- T Consensus 40 ~d~~~l~~vl~NLl~NAiky~----~~~i~I~~~~~~~~~~i~V~D~G~Gi~~~~~~---~------iF~~F~r~~~~-- 104 (152) T 1id0_A 40 GEQNDFVEVMGNVLDNACKYC----LEFVEISARQTDEHLYIVVEDDGPGIPLSKRE---V------IFDRGQRVDTL-- 104 (152) T ss_dssp SCHHHHHHHHHHHHHHHHHHC----SSEEEEEEEECSSCEEEEEEESSSCCCGGGTT---G------GGSCCCCTTCC-- T ss_pred ECHHHHHHHHHHHHHHHHHHC----CCCEEEEEEEECCEEEEEEEECCCCCCHHHHH---H------HCCCCCCCCCC-- T ss_conf 889999999999999999977----99889999997999999999889998989999---8------72897048999-- Q ss_pred CCEEEECCCCCHHHHHHHHEEEEEE----EEEEC-CCEEEEEEEE Q ss_conf 7415631445388987620321269----99941-8838999972 Q gi|254780222|r 146 STYEISGGLHGVGISVVNALSDELH----VTVAR-QNTIFSQKFS 185 (686) Q Consensus 146 ~~yk~sgGlnGvGaklvNalS~~f~----Vev~r-~gk~y~q~f~ 185 (686) ..| .|+|.++|..+-+... ++... .|..++.+|- T Consensus 105 -----~~G-~GLGL~i~k~iv~~h~G~I~~~s~~~~G~~f~i~lP 143 (152) T 1id0_A 105 -----RPG-QGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFG 143 (152) T ss_dssp -----CTT-CCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEEC T ss_pred -----CCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEC T ss_conf -----897-147999999999985998999975998579999987 No 47 >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Probab=96.56 E-value=0.00063 Score=44.75 Aligned_cols=95 Identities=18% Similarity=0.334 Sum_probs=54.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCC Q ss_conf 7550220244366667877761899769999828-98--39999669843444176657870123454520024777777 Q gi|254780222|r 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 (686) Q Consensus 70 ~~~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd~ 146 (686) +..-|.+++.-+|+||++-.- ....|.|.+.. ++ .|+|.|+|.|||-+..+ . ||--..++.+ T Consensus 120 d~~~l~qvl~NLl~NAik~~~--~~~~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~---~------iFepF~~tk~---- 184 (244) T 3d36_A 120 EREKFRQCLLNVMKNAIEAMP--NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLE---R------LGEPYFTTKG---- 184 (244) T ss_dssp CHHHHHHHHHHHHHHHHHTCT--TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHH---H------TTSTTCCSSG---- T ss_pred CHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEECCEEEEEEEECCCCCCHHHHH---H------HCCCCCCCCC---- T ss_conf 799999999999999998676--897689999960888999999868898989999---8------6699865899---- Q ss_pred CEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEE Q ss_conf 415631445388987620321----26999941-883899997 Q gi|254780222|r 147 TYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKF 184 (686) Q Consensus 147 ~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f 184 (686) ++| .|+|.++|.-+-+ ...|+... .|..|..+| T Consensus 185 ----~~G-tGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~l 222 (244) T 3d36_A 185 ----VKG-TGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYL 222 (244) T ss_dssp ----GGC-CSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEE T ss_pred ----CCC-CCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE T ss_conf ----996-47689999999998899799996699966999998 No 48 >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Probab=96.48 E-value=0.0021 Score=41.16 Aligned_cols=86 Identities=20% Similarity=0.355 Sum_probs=54.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECC-CC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC Q ss_conf 75502202443666678777618-99769999828-98--3999966984344417665787012345452002477777 Q gi|254780222|r 70 DEKALHHLFSEVIDNAMDEVIAG-YANLIEVSLDG-NG--FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 (686) Q Consensus 70 ~~~GL~~i~~EIldNavDe~~~g-~~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~L~aggnfdd 145 (686) |..-|..++.-+|+||+.-...| ....|.|.... ++ .|+|.|+|.|||-+.. +-||.....+.+-.. T Consensus 135 D~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D~G~GI~~e~~---------~~iF~~F~r~~~~~~ 205 (258) T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK---------DRIFEQFYRVDSSLT 205 (258) T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT---------TGGGSTTCCCC---- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH---------HHHCCCCCCCCCCCC T ss_conf 79999999999999999855358982489999960599899999982898898999---------987459882888888 Q ss_pred CCEEEECCCCCHHHHHHHHEEEE Q ss_conf 74156314453889876203212 Q gi|254780222|r 146 STYEISGGLHGVGISVVNALSDE 168 (686) Q Consensus 146 ~~yk~sgGlnGvGaklvNalS~~ 168 (686) +-.+| .|+|.++|.-+-+. T Consensus 206 ---~~~~G-~GLGL~i~k~iv~~ 224 (258) T 2c2a_A 206 ---YEVPG-TGLGLAITKEIVEL 224 (258) T ss_dssp ---------CCCTHHHHHHHHHH T ss_pred ---CCCCC-CCHHHHHHHHHHHH T ss_conf ---99994-04899999999998 No 49 >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Probab=96.21 E-value=0.0074 Score=37.42 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=35.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-C--EEEEEECCCCCCCC Q ss_conf 502202443666678777618997699998289-8--39999669843444 Q gi|254780222|r 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN-G--FLTVVDNGRGIPVE 119 (686) Q Consensus 72 ~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d-g--~IsV~ddGrGIPv~ 119 (686) ..|+.++.|.+.||+-.+ .+++|.|.+..+ + .|+|.|||.|+|-+ T Consensus 39 ~~l~~ii~E~ltNa~kHa---~a~~v~v~l~~~~~~~~l~V~DnG~g~~~~ 86 (128) T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEE 86 (128) T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCS T ss_pred HHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCCC T ss_conf 999999999999999847---996799999987999999999799454345 No 50 >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} Probab=95.95 E-value=0.023 Score=34.05 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=3.7 Q ss_pred HHHHHHHHHH Q ss_conf 6889999999 Q gi|254780222|r 550 HIASLLLTFF 559 (686) Q Consensus 550 HI~~Lll~ff 559 (686) .++-.+.|++ T Consensus 244 ~l~qvl~NLl 253 (349) T 3a0r_A 244 RIKQVLINLV 253 (349) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 51 >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Probab=95.14 E-value=0.012 Score=36.01 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=31.4 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---CEEEEEECCCCCCCCC Q ss_conf 02202443666678777618997699998289---8399996698434441 Q gi|254780222|r 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN---GFLTVVDNGRGIPVEN 120 (686) Q Consensus 73 GL~~i~~EIldNavDe~~~g~~~~I~V~i~~d---g~IsV~ddGrGIPv~~ 120 (686) -|..++..++.||++..- .....|.|.+..+ -.|+|.|+|+|||-+. T Consensus 112 ~l~~il~nli~NAi~~~~-~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~ 161 (192) T 1ixm_A 112 KLMRKLFHLFDQAVSRES-ENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192) T ss_dssp HHHHHHHHHHHHHBCTTS-CCEEEEEEECCCSSSSCEEEEEEESCBSCGGG T ss_pred HHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCEEEEEEEECCCCCCHHH T ss_conf 999999999999887427-89866999999679999999997688568899 No 52 >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Probab=95.05 E-value=0.048 Score=31.84 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=29.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--C-CEEEEEECCCCCCCC Q ss_conf 0220244366667877761899769999828--9-839999669843444 Q gi|254780222|r 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDG--N-GFLTVVDNGRGIPVE 119 (686) Q Consensus 73 GL~~i~~EIldNavDe~~~g~~~~I~V~i~~--d-g~IsV~ddGrGIPv~ 119 (686) .|..++.|+|.||+..+ ++..|.|.+.. + -.++|.|||.|+|.+ T Consensus 130 ~l~~il~ell~Na~kh~---~~~~v~i~~~~~~~~~~i~v~Dng~g~~~~ 176 (218) T 3ehh_A 130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEE 176 (218) T ss_dssp HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC-- T ss_pred HHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCEEEEECCCCCCCCCCC T ss_conf 99999999997112114---550589874143203432214798766777 No 53 >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3 Probab=94.46 E-value=0.11 Score=29.24 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=47.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC-------EEEEEECC--C-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEE Q ss_conf 775502202443666678777618997-------69999828--9-8--3999966984344417665787012345452 Q gi|254780222|r 69 TDEKALHHLFSEVIDNAMDEVIAGYAN-------LIEVSLDG--N-G--FLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 (686) Q Consensus 69 t~~~GL~~i~~EIldNavDe~~~g~~~-------~I~V~i~~--d-g--~IsV~ddGrGIPv~~h~k~~~~~~~Elif~~ 136 (686) .+..-|.++|.-+|.||++....+... ...+.+.. + . .|+|.|||.|||-+.. +.++.| T Consensus 44 ~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~---~~iF~p------ 114 (160) T 1r62_A 44 HDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQ---DTLFYP------ 114 (160) T ss_dssp ECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------- T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCHHHH---HHHCCC------ T ss_conf 88999999999999999985036896168864102303430235684689997878897798999---972787------ Q ss_pred EECCCCCCCCCEEEECCCCCHHHHHHHHEE Q ss_conf 002477777741563144538898762032 Q gi|254780222|r 137 LHAGGKFDNSTYEISGGLHGVGISVVNALS 166 (686) Q Consensus 137 L~aggnfdd~~yk~sgGlnGvGaklvNalS 166 (686) ..+ +| .+| .|+|.++|.-+- T Consensus 115 f~t-~k--------~~G-~GLGL~i~~~iv 134 (160) T 1r62_A 115 MVS-GR--------EGG-TGLGLSIARNLI 134 (160) T ss_dssp -------------------CHHHHHHHHHH T ss_pred CEE-CC--------CCC-CCCCHHHHHHHH T ss_conf 220-48--------899-866199999999 No 54 >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* Probab=85.42 E-value=0.37 Score=25.73 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=59.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC--------C--CCEEEEEECC-CC--EEEEEECCCCCCCCCC------------CCCC Q ss_conf 5502202443666678777618--------9--9769999828-98--3999966984344417------------6657 Q gi|254780222|r 71 EKALHHLFSEVIDNAMDEVIAG--------Y--ANLIEVSLDG-NG--FLTVVDNGRGIPVENH------------PKFP 125 (686) Q Consensus 71 ~~GL~~i~~EIldNavDe~~~g--------~--~~~I~V~i~~-dg--~IsV~ddGrGIPv~~h------------~k~~ 125 (686) ...|...+-.++.||+|....+ . ...|.+.... .+ .+++.|||+||+.... +... T Consensus 104 ~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~~~~~~~~~~~~~~~~~~~ 183 (379) T 1b3q_A 104 VEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAA 183 (379) T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC T ss_conf 99999999999877776434786289886403555303799974987999994068776643441258984022232345 Q ss_pred CCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEE----EEEEEEEC-CCEEEEEEEECCCEECC Q ss_conf 870123454520024777777415631445388987620321----26999941-88389999727945113 Q gi|254780222|r 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD----ELHVTVAR-QNTIFSQKFSRGIPLSP 192 (686) Q Consensus 126 ~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~----~f~Vev~r-~gk~y~q~f~~g~~~~~ 192 (686) +. .++-++-.+...+.-........+| .|+|.++|.-+-+ ...|++.- .|..|+.++=-.....+ T Consensus 184 ~~-~~~~i~~~~f~~~~s~~~~~~~~~G-~GLGL~ivk~ive~hgG~I~V~S~~G~GTtF~i~lP~~~~~~~ 253 (379) T 1b3q_A 184 TL-SDQEILNFLFVPGFSTKEKVSEVSG-RGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAIIC 253 (379) T ss_dssp TS-CTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEEEE T ss_pred CC-CHHHHHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEEEHHHHH T ss_conf 54-6789977653246443432013799-9614999999999838879999618988899999964133023 No 55 >3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, structural genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A Probab=70.99 E-value=3.8 Score=18.81 Aligned_cols=50 Identities=16% Similarity=0.424 Sum_probs=29.0 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCEEEEEECCCCC Q ss_conf 154677755022024436666787776189----97699998289839999669843 Q gi|254780222|r 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGY----ANLIEVSLDGNGFLTVVDNGRGI 116 (686) Q Consensus 64 mYIGst~~~GL~~i~~EIldNavDe~~~g~----~~~I~V~i~~dg~IsV~ddGrGI 116 (686) +|+||++.+.+-- .|++-.|+...++.. ...+.+.|..+| |+|.|+.++- T Consensus 19 ~YLGSv~V~~~~G--~~vi~~Ai~~l~~~~~~~k~~~V~L~VS~~G-Ikv~D~~~~~ 72 (157) T 3hqc_A 19 LYLTSVETESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQRKL 72 (157) T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEETTE T ss_pred EEEEEEEECCCCC--HHHHHHHHHHHHHHCCCCCCCEEEEEEECCE-EEEEECCCCC T ss_conf 9873799179998--8999999999997288999948999996382-9999789885 No 56 >3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A Probab=43.99 E-value=12 Score=15.30 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=24.0 Q ss_pred HHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEECCCC Q ss_conf 43269815467775502202443666678777618----99769999828983999966984 Q gi|254780222|r 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDNGRG 115 (686) Q Consensus 58 VrkRP~mYIGst~~~GL~~i~~EIldNavDe~~~g----~~~~I~V~i~~dg~IsV~ddGrG 115 (686) +..=+..|+|++...+..- .+++..|++..+.. ....+.++|..+ .|.|.|...+ T Consensus 7 ~~~f~v~YLG~~~v~~~~G--~~~v~~ai~~l~~~~~~~~~~~V~l~Vs~~-gv~v~d~~t~ 65 (140) T 3dxe_A 7 VQKFQVYYLGNVPVAKPVG--VDVINGALESVLSSSSREQWTPSHVSVAPA-TLTILHQQTE 65 (140) T ss_dssp ---CEEEEEEEEEESCSCC--HHHHHHHHHHHHHTCCGGGCEEEEEEECSS-EEEEEETTTC T ss_pred CEEEEEEEEEEEEECCCCC--HHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCC T ss_conf 3599999989999388788--699999999998635678985599999389-8999967997 No 57 >1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1 Probab=41.99 E-value=1.1 Score=22.47 Aligned_cols=65 Identities=26% Similarity=0.414 Sum_probs=35.8 Q ss_pred EEEEEECCCCC-CCCHHHCCCCCCEEEEEECCEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 37997327676-42100101122201221123131445410877632288999998825665433333465525189997 Q gi|254780222|r 464 TELFIVEGDSA-GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 (686) Q Consensus 464 ~eL~lvEGDSA-~gsAk~grdr~~qgi~PLRGKiLNv~~as~~ki~~N~Ei~~l~~~lGl~~g~~~~~~~LRYgkIiImT 542 (686) -.+|||||--= ..+-..| +.++.++-|.-+. +.+..| ..++.+||||+ T Consensus 21 ~~viiVEG~~D~~aL~~~G----i~n~va~~Gt~~~------------~~~~~l---------------~~~~~~Vil~~ 69 (118) T 1t6t_1 21 EAVILVEGKNDKKALSKFS----IKNVIDLSGKRYA------------DVVDML---------------EGKWEKVILLF 69 (118) T ss_dssp TSEEEESSHHHHHHHHTTT----CCCEEECTTSCHH------------HHHHHH---------------TTTCSEEEECC T ss_pred CCEEEECCHHHHHHHHHCC----CCHHHHCCCCCHH------------HHHHHH---------------HHCCCEEEEEE T ss_conf 9789973899999999816----5232301686559------------999999---------------86489389986 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 79877146889999999 Q gi|254780222|r 543 DADVDGAHIASLLLTFF 559 (686) Q Consensus 543 DaD~DGsHI~~Lll~ff 559 (686) |.|.-|.-..-=+...| T Consensus 70 D~D~aG~~~~~k~~~~L 86 (118) T 1t6t_1 70 DLDTHGERINQKMKELL 86 (118) T ss_dssp CSSHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 78888999999999999 No 58 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=39.98 E-value=15 Score=14.82 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=10.1 Q ss_pred EEEEHHH--CCCCCCCCCCC Q ss_conf 7763456--07644662025 Q gi|254780222|r 372 VFIREPE--FAGQTKTKLVS 389 (686) Q Consensus 372 v~I~nP~--FesQTKekL~s 389 (686) +-|.||- +.|.|-+.|.. T Consensus 331 lei~nPG~l~~git~e~l~~ 350 (583) T 3lmm_A 331 LIVRSPGGFPAAITSENVLS 350 (583) T ss_dssp EEEEEESCCCTTCCTTSSTT T ss_pred EEEECCCCCCCCCCHHHHCC T ss_conf 99967987878758887258 No 59 >1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A* Probab=36.36 E-value=13 Score=15.06 Aligned_cols=11 Identities=36% Similarity=0.253 Sum_probs=6.0 Q ss_pred CCHHHHHHHHH Q ss_conf 78999999999 Q gi|254780222|r 592 HDEEHKQKILE 602 (686) Q Consensus 592 ~~e~e~~~~~~ 602 (686) |||..+-+.++ T Consensus 477 yTeatLi~~Me 487 (592) T 1mw9_X 477 FSEASLVKELE 487 (592) T ss_dssp CCHHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 99899999998 No 60 >1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A Probab=36.06 E-value=17 Score=14.41 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=27.8 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCEEEEEECCCCC Q ss_conf 154677755022024436666787776189----97699998289839999669843 Q gi|254780222|r 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGY----ANLIEVSLDGNGFLTVVDNGRGI 116 (686) Q Consensus 64 mYIGst~~~GL~~i~~EIldNavDe~~~g~----~~~I~V~i~~dg~IsV~ddGrGI 116 (686) +|+||++.+.+-- .+++..|++..++.. ...+.++|..+ .|.|.|+-++- T Consensus 7 ~YLGs~~V~~~~G--~~~i~~Av~~l~~~~~~~k~~~V~l~Vs~~-GIki~d~~~~~ 60 (134) T 1wvh_A 7 LFINSVEMESLTG--PQAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKL 60 (134) T ss_dssp EEEEEEEEETCCH--HHHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCS T ss_pred EEEEEEEECCCCC--HHHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEECCCCC T ss_conf 9862599379889--899999999999618899984999999269-68999468884 No 61 >3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A Probab=32.30 E-value=15 Score=14.72 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.0 Q ss_pred CCCCCCCCCCCEEEEECCCCC Q ss_conf 333346552518999779877 Q gi|254780222|r 527 QYREEDLRYEKVIIMTDADVD 547 (686) Q Consensus 527 ~~~~~~LRYgkIiImTDaD~D 547 (686) +|.+++||.|-++-..|+|.- T Consensus 207 e~gld~LR~GD~VaI~d~D~~ 227 (284) T 3dcl_A 207 DLGVADLKLGDIVAIQDHDNS 227 (284) T ss_dssp GGTSSCCBTTBEEEEEEEECS T ss_pred HHCCCCCCCCCEEEEECCCCC T ss_conf 928773021579999416776 No 62 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=27.32 E-value=18 Score=14.14 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=15.6 Q ss_pred EEEEEECCCCCCCCHHHCC--CCCCEEEEEE Q ss_conf 3799732767642100101--1222012211 Q gi|254780222|r 464 TELFIVEGDSAGGSAKQAR--NRSNQAVLPL 492 (686) Q Consensus 464 ~eL~lvEGDSA~gsAk~gr--dr~~qgi~PL 492 (686) +.|+||+ |-.+=.=-..| |++.|.++|| T Consensus 291 ~glmlt~-~gp~viE~N~RfGDPE~q~ll~~ 320 (442) T 3lp8_A 291 AGIIIKK-NEPKLLEYNVRFGDPETQSILPR 320 (442) T ss_dssp EEEEEET-TEEEEEEEESSCCTTHHHHHGGG T ss_pred EEEEEEC-CCCEEEEEEEEECCCCCEEEECC T ss_conf 4799968-97169987422079855045303 No 63 >3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A 2ztn_A Probab=25.79 E-value=17 Score=14.38 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=12.5 Q ss_pred CCCEEEEEECCEECCHHHH Q ss_conf 2220122112313144541 Q gi|254780222|r 484 RSNQAVLPLRGKILNVASA 502 (686) Q Consensus 484 r~~qgi~PLRGKiLNv~~a 502 (686) ...+.+||||||+- +|.+ T Consensus 423 ~~~~~~lp~~gk~s-~w~~ 440 (504) T 3hag_A 423 SKTFFVLPLRGKLS-FWEA 440 (504) T ss_dssp TEEEECEEBSSCCE-EEES T ss_pred CCEEEEEECCCCCC-HHHC T ss_conf 82699843378642-4115 No 64 >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* Probab=25.64 E-value=23 Score=13.40 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=15.4 Q ss_pred HHHHCCCCEEECCC-CCCCHHHHHHHHHHH Q ss_conf 03432698154677-755022024436666 Q gi|254780222|r 56 EPVRMRPGMYIGGT-DEKALHHLFSEVIDN 84 (686) Q Consensus 56 E~VrkRP~mYIGst-~~~GL~~i~~EIldN 84 (686) ....++.+.||... |.+| --|+|||+.- T Consensus 71 k~l~k~~~iiiAtD~DREG-E~I~~~i~~~ 99 (633) T 2gai_A 71 KDLAKKGELLIASDMDREG-EAIAWHIARV 99 (633) T ss_dssp HHHHHHSCEEECCCSSHHH-HHHHHHHHHH T ss_pred HHHHCCCCEEECCCCCCCH-HHHHHHHHHH T ss_conf 9985599799958998346-5999999998 No 65 >2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A* Probab=25.63 E-value=25 Score=13.24 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.2 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 518999779877146889999999 Q gi|254780222|r 536 EKVIIMTDADVDGAHIASLLLTFF 559 (686) Q Consensus 536 gkIiImTDaD~DGsHI~~Lll~ff 559 (686) -+|+|++|.|.-|--++.-|...| T Consensus 51 ~~Iil~~D~D~aG~k~~~~l~~~L 74 (119) T 2fcj_A 51 YDVYLLADADEAGEKLRRQFRRMF 74 (119) T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC T ss_pred CEEEEECCCCHHHHHHHHHHHHHC T ss_conf 869997389779999999999867 No 66 >3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* Probab=24.36 E-value=8.7 Score=16.33 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=38.7 Q ss_pred CCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCC Q ss_conf 88539999984243200122228999998888753057735999516453222455411234315861 Q gi|254780222|r 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 (686) Q Consensus 202 k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi 269 (686) +..++|-|.-|+..| |. .....|+.++|-.||+-++.+...............+.|+-+++| T Consensus 133 ~~~~~IWFSn~P~~f-Mp-----~e~q~~L~e~reqNp~~~i~LVYsStlLn~~a~~ql~~faken~I 194 (525) T 3jsz_A 133 NVQTSIWFSIKPELF-MP-----SKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNI 194 (525) T ss_dssp SEEEEECCCSSTTCS-SC-----HHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTE T ss_pred CCEEEEEEECCHHHH-CC-----HHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCC T ss_conf 855999973786674-26-----778999999997589983999961132388999999999875693 No 67 >2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Probab=24.35 E-value=8.7 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=12.6 Q ss_pred EEECCHHHHHHHHHHHHHCCCCC Q ss_conf 99378999999999877417886 Q gi|254780222|r 589 VYAHDEEHKQKILEEFKKHGKGK 611 (686) Q Consensus 589 ~y~~~e~e~~~~~~~~~~~~~~k 611 (686) .|..|++|+..|...+..+|... T Consensus 58 rY~LS~EEf~~W~~av~~hG~~g 80 (95) T 2jrt_A 58 RYSLSEEEFALWRSAVAAHGEKA 80 (95) T ss_dssp HTTCCHHHHHHHHHHTTTCCTTS T ss_pred HHCCCHHHHHHHHHHHHHHHHHH T ss_conf 96888999999999999975889 No 68 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=22.78 E-value=28 Score=12.88 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=9.8 Q ss_pred HHHHHHCCCCH--HHHHHHHHH Q ss_conf 99998807981--689999997 Q gi|254780222|r 657 DSINKLMGTKA--DERFKFIQE 676 (686) Q Consensus 657 ~~f~~lmG~~~--~~RK~wi~~ 676 (686) ..|..|+|.+. +.|+.|..+ T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~ 645 (666) T 2zxr_A 624 ARLKALVHRRLLFAYERRHPGL 645 (666) T ss_dssp HHHHHHHHHHHHHHHHTTCHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHH T ss_conf 9999987636546666303202 No 69 >1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B Probab=21.29 E-value=30 Score=12.68 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=19.5 Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCEEEEEEC Q ss_conf 815467775502202443666678777618----99769999828983999966 Q gi|254780222|r 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAG----YANLIEVSLDGNGFLTVVDN 112 (686) Q Consensus 63 ~mYIGst~~~GL~~i~~EIldNavDe~~~g----~~~~I~V~i~~dg~IsV~dd 112 (686) ..|+|++....+- - .+++.+|++..+.. ....+.+.|..+ .|.|.++ T Consensus 20 vkYLGs~~v~~~~-g-~~~v~~ai~~l~~~~~~~~~~~v~l~Vs~~-gv~i~~~ 70 (136) T 1wgu_A 20 VQYLGMLPVDRPV-G-MDTLNSAIENLMTSSSKEDWPSVNMNVADA-TVTVISE 70 (136) T ss_dssp EEEEEEEECSCSS-C-SHHHHHHHHHHHHSSCTTTSCEEEEEEETT-EEEEECS T ss_pred EEEEEEEECCCCC-C-HHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEEC T ss_conf 9998889908878-8-579999999999647688981799999857-3899751 No 70 >2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} SCOP: d.104.1.4 Probab=21.12 E-value=18 Score=14.12 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=9.3 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 99987630188332223322223 Q gi|254780222|r 341 GIKKYAELTQNKRAISIISDDLM 363 (686) Q Consensus 341 ~i~~~~~~~~~kk~~~i~~~dIk 363 (686) .++++.... ..++.-.++|+- T Consensus 94 i~~e~L~~~--g~~~~r~GDDLy 114 (190) T 2ddz_A 94 RLVELLWNY--GIEASRRGDDIY 114 (190) T ss_dssp HHHHHHHTT--TCCEEEETTEEE T ss_pred HHHHHHHHC--CCCEEECCCEEE T ss_conf 999999975--986176278578 Done!