PSIBLAST alignment of GI: 254780222 and protein with PDB id: 1pvg
>gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
>gi|34810357|pdb|1PVG|B Chain B, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418
Score = 189 bits (480), Expect = 1e-45, Method: Composition-based stats.
Identities = 84/413 (20%), Positives = 152/413 (36%), Gaps = 41/413 (9%)
Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE---------------------- 71
+ SASD Y + + LE + RP YIG +
Sbjct: 7 STEPVSASDKY-----QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCXIEKNVTI 61
Query: 72 -KALHHLFSEVIDNAMDEVIAGYA-NLIEVSLD-GNGFLTVVDNGRGIPVENHPKFPNKS 128
L +F E++ NA D + + I+V++ + V ++G+GIP+E H K N
Sbjct: 62 VPGLFKIFDEILVNAADNKVRDPSXKRIDVNIHAEEHTIEVKNDGKGIPIEIHNK-ENIY 120
Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN--TIFSQKFSR 186
E I L +D+ +++GG +G G + N S E + A N + QK+
Sbjct: 121 IPEXIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWEN 180
Query: 187 GIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245
+ K + T++TF+PD FG K + + +
Sbjct: 181 NXSICHPPKITSYKKGPSYTKVTFKPDLTRFGXKELDNDILGVXRRRVYDINGSVRDINV 240
Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305
+ + K + + L+ Q S+I T E+ E A
Sbjct: 241 YLNGKSL-KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER---INNRWEVA 296
Query: 306 IAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365
A + + + S+ N+I T GGTH + + +KK +E+ + K+ S+ S + +
Sbjct: 297 FAVSDISFQQISFVNSIATTXGGTHVNYITDQ---IVKKISEILKKKKKKSVKSFQIKNN 353
Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418
++ I P F QTK +L + + + + + + +
Sbjct: 354 XFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIXKTDLATRXF 406