BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] (686 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] gi|254039899|gb|ACT56695.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 686/686 (100%), Positives = 686/686 (100%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM Sbjct: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN Sbjct: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF Sbjct: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR Sbjct: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG Sbjct: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 Query: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD Sbjct: 301 TVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE Sbjct: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ Sbjct: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII Sbjct: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI Sbjct: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN Sbjct: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 Query: 661 KLMGTKADERFKFIQERASFIDDVGT 686 KLMGTKADERFKFIQERASFIDDVGT Sbjct: 661 KLMGTKADERFKFIQERASFIDDVGT 686 >gi|146295090|ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408666|gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 637 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 269/655 (41%), Positives = 405/655 (61%), Gaps = 24/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ Sbjct: 2 ATTKNPNQEYTASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ S Y++SGGL Sbjct: 62 KNIDVIIHRDNSVTVLDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNESVYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V R ++ QK+ RG P+ L+ + + GT++TF PD + Sbjct: 121 HGVGASVVNALSRYLEVEVYRDGKVYYQKYERGKPVCDLKVIGQTQR-TGTKVTFLPDDE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF FDA LL+ + A+L+ ++ ++ ++E P+ E + GG+ +++ Sbjct: 180 IFETI-EFDADVLLQRLRELAFLNKGIRITFTDEREK-----NPKTIELKYDGGIAEFVK 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ ++ E + EK VE AI + ++ I S+ N I T +GGTH G Sbjct: 234 FLNRNKEVLHPEPIYIEGEKNQIL---VEVAIQYTDQFGENIYSFANNIATIDGGTHLVG 290 Query: 334 LRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + A+T+ + +YA+ + + + +D+ ++SV I EP+F GQTKTKL + +A Sbjct: 291 FKAAVTKAVNEYAKKYNFVKGDNQLLGEDIRDGMTAVVSVKIHEPQFEGQTKTKLGNSEA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLP 450 + VEN + + +L +NP + K+++ + ++ R RK RE + RK+A+ LP Sbjct: 351 RWAVENLVSEKLAAFLEENPDVSKKIIDKALLAAKAREEARKARELVIKRKSALDSSNLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N Sbjct: 411 GKLADCSEKDPEKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ L+QALGC + + LRY KVI+M DADVDG+HI +LLLTFFY+ M LIE Sbjct: 471 DKLLPLIQALGCGIGNDLDLKKLRYHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H+++ PPL++IT+G + YA++++ QKIL+E K ++ RFKGLGEM A +L E Sbjct: 531 HIYIAQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAEELWE 585 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 586 TTMDPARRILLRVELEDAVM----AEEIFTILMGEKVEPRREFIEKNAKYVRNLD 636 >gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108] gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108] Length = 637 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 266/652 (40%), Positives = 397/652 (60%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q+ S Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ I Sbjct: 5 QNGSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHGV Sbjct: 65 EVVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L V V R ++ Q++ RG P L+ ++ GT++TF PD +IF Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD +L+ + A+L+ ++ + ++E K + GG+ +++ Sbjct: 183 TI-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPIE-----LKYNGGIAEFVKFLN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + EK +E A+ + + I S+ N I T +GGTH G + Sbjct: 237 RNKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKT 293 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ Sbjct: 294 AVTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWA 353 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453 VEN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKL Sbjct: 354 VENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKL 413 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N ++ Sbjct: 414 ADCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKL 473 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + L+QALG + + LRY K+IIM DADVDG+HI +LLLTFFY+ M LIE H++ Sbjct: 474 LPLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIY 533 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++IT+G + YA++++ QKIL+E K ++ RFKGLGEM A +L ET M Sbjct: 534 IAQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 589 DPARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636 >gi|222528063|ref|YP_002571945.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725] gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725] Length = 650 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 266/651 (40%), Positives = 396/651 (60%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 19 TNSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 78 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHGVG Sbjct: 79 VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 137 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R ++ Q++ RG P L+ ++ GT++TF PD +IF Sbjct: 138 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFET 196 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD +L+ + A+L+ ++ + ++E K + GG+ +++ Sbjct: 197 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVE-----LKYDGGIAEFVKFLNR 250 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + EK +E A+ + + I S+ N I T +GGTH G + A Sbjct: 251 NKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 307 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ V Sbjct: 308 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 367 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 EN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKLA Sbjct: 368 ENLVSERLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 427 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N +++ Sbjct: 428 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 487 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+QALG + + LRY KVIIM DADVDG+HI +LLLTFFY+ M LIE H+++ Sbjct: 488 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 547 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G + YA++++ QKIL+E K ++ RFKGLGEM A +L ET MD Sbjct: 548 AQPPLYKITKGKQVRYAYNDKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 602 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 603 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 649 >gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002] gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 650 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 266/651 (40%), Positives = 396/651 (60%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 19 TNSQQYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 78 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHGVG Sbjct: 79 VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 137 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R ++ Q++ RG P L+ ++ GT++TF PD +IF Sbjct: 138 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFET 196 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD +L+ + A+L+ ++ + ++E K + GG+ +++ Sbjct: 197 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVE-----LKYDGGIAEFVKFLNR 250 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + EK +E AI + + I S+ N I T +GGTH G + A Sbjct: 251 NKEVLHQEPIYIEGEKNDIL---IEIAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 307 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ V Sbjct: 308 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 367 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 EN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKLA Sbjct: 368 ENLVSERLAAFLEENPDISKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 427 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N +++ Sbjct: 428 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 487 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+QALG + + LRY KVIIM DADVDG+HI +LLLTFFY+ M LIE H+++ Sbjct: 488 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 547 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G + YA++++ QK+L+E K ++ RFKGLGEM A +L ET MD Sbjct: 548 AQPPLYKITKGKQVRYAYNDKELQKVLQEMKDA-----QVQRFKGLGEMNAQELWETTMD 602 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 603 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 649 >gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 637 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 266/651 (40%), Positives = 397/651 (60%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 6 TNSQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHGVG Sbjct: 66 VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R ++ Q++ RG P L+ + N+ GT++TF PD +IF Sbjct: 125 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NRTGTKVTFLPDDEIFET 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD +L+ + A+L+ ++ + ++E K + GG+ +++ Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIE-----LKYDGGIAEFVKFLNR 237 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + EK +E A+ + + I S+ N I T +GGTH G + A Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 294 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ V Sbjct: 295 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 EN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKLA Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N +++ Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+QALG + + LRY K+IIM DADVDG+HI +LLLTFFY+ M LIE H+++ Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G + YA++E+ Q+IL+E K ++ RFKGLGEM A +L ET MD Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQRILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 590 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636 >gi|312877900|ref|ZP_07737845.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311795326|gb|EFR11710.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 637 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 267/651 (41%), Positives = 396/651 (60%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 6 TNSQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHGVG Sbjct: 66 VVIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R ++ Q++ RG P L+ + N GT++TF PD +IF Sbjct: 125 ASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NSTGTKVTFLPDDEIFET 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD +L+ + A+L+ ++ + ++E K + GG+ +++ Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIE-----LKYDGGIAEFVKFLNR 237 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + EK +E AI + + I S+ N I T +GGTH G + A Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTA 294 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ V Sbjct: 295 VTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 EN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKLA Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N +++ Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+QALG + + LRY K+IIM DADVDG+HI +LLLTFFY+ M LIE H+++ Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G + YA++E+ Q+IL+E K ++ RFKGLGEM A +L ET MD Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQRILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 590 PARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 636 >gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL] gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL] Length = 637 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 270/651 (41%), Positives = 400/651 (61%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +++ Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 6 NSTQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGFCKNIE 65 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +TV+D+GRGIPV+ HPK KS +E++ T LHAGGKF+ Y++SGGLHGVG Sbjct: 66 VVIHKGNSVTVIDDGRGIPVDIHPKL-GKSGVEVVFTVLHAGGKFNERVYKVSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R I+ Q++ RG P L+ +K GT++TF PD +IF Sbjct: 125 ASVVNALSRYLEVEVYRDGKIYYQRYERGRPTCELKVIG-TTDKTGTKVTFLPDDEIFET 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD +L+ + A+L+ ++ + ++E P+ E + GG+ +++ Sbjct: 184 I-EFDGDVILQRLRELAFLNKGIRIVFLDEREK-----NPKPVELKYDGGIAEFVKFLNR 237 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + EK +E A+ + ++ I S+ N I T +GGTH G + A Sbjct: 238 NKEVLHQEPIYIEGEKNDIL---IEVAMQYTDDFGENIYSFANNIATIDGGTHLIGFKTA 294 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ V Sbjct: 295 VTKAVNEYAKKYNLTKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 EN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGKLA Sbjct: 355 ENLVSEKLAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLA 414 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N +++ Sbjct: 415 DCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLL 474 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+QALG + + LRY KVIIM DADVDG+HI +LLLTFFY+ M LIE H+++ Sbjct: 475 PLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G + YA++E+ QKIL+E K ++ RFKGLGEM A +L ET MD Sbjct: 535 AQPPLYKITKGKQVRYAYNEKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETTMD 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRVEI + ++ LMG + + R +FI++ A ++ ++ Sbjct: 590 PARRILLRVEIEDAVM----AEEIFTILMGDRVEPRREFIEKNAKYVRNLD 636 >gi|302870737|ref|YP_003839373.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47] Length = 638 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 269/653 (41%), Positives = 399/653 (61%), Gaps = 24/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N Y AS I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AGY Sbjct: 5 NPGEKQEYSASEIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVYEIVDNAIDEAMAGYCKN 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TV+D+GRGIPV+ HPK S +E++ T LHAGGKF+ Y++SGGLHG Sbjct: 65 IEVIIHKDNSVTVIDDGRGIPVDIHPKLQK-SGVEVVFTVLHAGGKFNERVYKVSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS L V V R ++ Q++ +G P+ L+ +K GT++TF PD +IF Sbjct: 124 VGASVVNALSCYLEVEVYRDGKVYYQRYEKGKPVCELKVIG-TTDKTGTKVTFLPDDEIF 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD +L+ + A+L+ ++ + ++E P+ E + GG+ +++ Sbjct: 183 ETI-EFDGDVILQRLRELAFLNKGIRIVFLDEREK-----NPKPVELKYDGGIAEFVKFL 236 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ ++ E + EK +E A+ + ++ I S+ N I T +GGTH G + Sbjct: 237 NRNKEVLHQEPIYIEGEKNDIL---IEVAVQYTDDFGENIYSFANNIATIDGGTHLIGFK 293 Query: 336 VALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+T+ + +YA+ K ++ +D+ I+SV I EP+F GQTKTKL + +A+ Sbjct: 294 TAVTKAVNEYAKKYNFIKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARW 353 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGK 452 VEN + + +L +NP + K+++ I ++ R +K RE + RK+A+ LPGK Sbjct: 354 AVENLVSEKLATFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGK 413 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS+ E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV A +KI +N + Sbjct: 414 LADCSEKDPAKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDK 473 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ L+QALG + + LRY KVIIM DADVDG+HI +LLLTFFY+ M LIE H+ Sbjct: 474 LLPLIQALGVGIGNDIDLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHI 533 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++IT+G + YA++E+ QKIL+E K ++ RFKGLGEM A +L ET Sbjct: 534 YIAQPPLYKITKGKQVRYAYNEKELQKILQEMKDA-----QVQRFKGLGEMNAQELWETT 588 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +R LLRVE+ + ++ LMG K + R +FI++ A ++ ++ Sbjct: 589 MDPARRILLRVELEDAVM----AEEIFTILMGDKVEPRREFIEKNAKYVRNLD 637 >gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941] gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941] Length = 644 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 266/657 (40%), Positives = 386/657 (58%), Gaps = 22/657 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + + +YDASSI++LEGLE V+ RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 5 TAAKHSKSDYDASSIQVLEGLEAVKRRPGMYIGSTGPRGLHHLVWEIVDNSIDEALAGYC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D+GRG+PV K+ KS E+I+TTLHAGGKFD TY++SGGL Sbjct: 65 TEISVTVHPDNSVTVSDDGRGMPVGVMEKY-GKSAAEVIMTTLHAGGKFDGQTYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPD 212 HGVG SVVNALS+ L + + R +++Q++ RG P++ LE+ K R GT + FRPD Sbjct: 124 HGVGASVVNALSEWLELEIRRDGHLWTQRYERGFPVTGLERGRKLGKREGTGTTVRFRPD 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF F L + + A+L+ ++ + ++E + + + GG+K + Sbjct: 184 PQIFETV-EFSFDTLSRRFRESAFLNKGLRIRLADERE------EGREVVYRYEGGIKDF 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 + E + + I E++ G VE A+ W + + ++ N I T EGGTH Sbjct: 237 VAHINEAKDPVHKTILYFHREEEA---GDVEVAMQWNSGYQDSVFTFANNINTHEGGTHL 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 SG R ALTR I +YA ++ ++ DD+ ++SV +REP+F GQTKTKL + Sbjct: 294 SGFRAALTRTINEYARQKGLLKEKEENLTGDDIREGLAAVISVKLREPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + + VE+A +L +NP +A ++ I S RL K R+ RK + L Sbjct: 354 TEIKGLVESATNRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYLESSTL 413 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +EL+IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A K+ + Sbjct: 414 PGKLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLS 473 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A+G + E+ RY K++IMTDADVDG+HI +L+LTF Y+ M +LIE Sbjct: 474 NAEIQAMISAIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEA 533 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL++IT + VY + + Q+ L + G +SRFKGLGEM QL Sbjct: 534 GYVYIAQPPLYKITHNRRDVYVYSDAELQETLRRLRADGSA--TVSRFKGLGEMNPQQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET MD RTLL+V I+ S + LMG K + R FI+ A ++ Sbjct: 592 ETTMDPANRTLLQVTID----SAATADELFTALMGDKVEPRKAFIEANAREAKNIDA 644 >gi|52783861|ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580] gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2] gi|52346363|gb|AAU38997.1| GyrB [Bacillus licheniformis ATCC 14580] gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2] Length = 637 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 270/648 (41%), Positives = 390/648 (60%), Gaps = 20/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY I V++ Sbjct: 5 NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGLHGVG SV Sbjct: 65 EKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS EL VTV R I Q+F RG+P + L+ GT F+PDP+IF + Sbjct: 124 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDPEIFTETTE 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ VK +E E+ + + GG+K+Y++ +R Sbjct: 183 YDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YCYEGGIKSYVEHLNRSRE 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +I E + K G TVE A+ + + I S+ N I T EGGTHE+G + LTR Sbjct: 238 VIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTR 294 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ + Sbjct: 295 VINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L++NP A K++E V+ ++ + RK+A+ LPGKLADCS Sbjct: 355 LFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ ++ Sbjct: 415 SKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 474 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M +IEQ ++++ P Sbjct: 475 TALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG + YA++++ ++IL+E ++ K + R+KGLGEM A+QL ET MD Sbjct: 535 PLYKVQQGKRVEYAYNDQQLEEILKELPQNPKPG--LQRYKGLGEMNATQLWETTMDPET 592 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + D ++ LMG K + R FI+E A ++ ++ Sbjct: 593 RTLLQVTLKDAI----DADETFEMLMGDKVEPRRNFIEENARYVKNLD 636 >gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580] gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580] Length = 639 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 270/648 (41%), Positives = 390/648 (60%), Gaps = 20/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY I V++ Sbjct: 7 NNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVAI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGLHGVG SV Sbjct: 67 EKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS EL VTV R I Q+F RG+P + L+ GT F+PDP+IF + Sbjct: 126 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDT-EVTGTTTHFKPDPEIFTETTE 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ VK +E E+ + + GG+K+Y++ +R Sbjct: 185 YDYDTLATRVRELAFLTKGVKITIEDKREGKERKNE-----YCYEGGIKSYVEHLNRSRE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +I E + K G TVE A+ + + I S+ N I T EGGTHE+G + LTR Sbjct: 240 VIHEEPVYIEGSKDGI---TVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTR 296 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ + Sbjct: 297 VINDYARRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDA 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L++NP A K++E V+ ++ + RK+A+ LPGKLADCS Sbjct: 357 LFSEALEKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ ++ Sbjct: 417 SKDPTISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M +IEQ ++++ P Sbjct: 477 TALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG + YA++++ ++IL+E ++ K + R+KGLGEM A+QL ET MD Sbjct: 537 PLYKVQQGKRVEYAYNDQQLEEILKELPQNPKPG--LQRYKGLGEMNATQLWETTMDPET 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + D ++ LMG K + R FI+E A ++ ++ Sbjct: 595 RTLLQVTLKDAI----DADETFEMLMGDKVEPRRNFIEENARYVKNLD 638 >gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV, B subunit [Thermincola sp. JR] gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR] Length = 635 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 263/653 (40%), Positives = 385/653 (58%), Gaps = 24/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q+ + NY AS I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 2 EQNTNHNYGASQIQVLEGLEAVRRRPGMYIGSTSTRGLHHLVYEVVDNSIDEALAGFCDK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TV+DNGRGIPV+ HPK K +E++LT LHAGGKF Y++SGGLHG Sbjct: 62 IEVIIHHDNSITVIDNGRGIPVDIHPKI-GKPAVEVVLTILHAGGKFGGDGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+ L V V R N I+ Q++ RG+P++ L+ N GT+ITF+PD +IF Sbjct: 121 VGVSVVNALSEWLEVEVKRDNHIYHQRYERGLPVTELKIIGD-SNSTGTKITFKPDHEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 D F+ L + + ++L+ + +++ EK F GG+ +++ Sbjct: 180 EDLV-FNFETLSQRLKELSFLNKGLTIILKDERDGNEKT-------FQHEGGIIDFVKHL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N+ ++ E + EK VE A+ + + I S+ N I T EGGTHE+G + Sbjct: 232 NKNKDVLHPEPIYFEGEKDDVM---VEIALQYNDGYTENIFSFVNNIHTHEGGTHEAGFK 288 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + ++ +D+ I+SV +REP+F GQTKTKL + + + Sbjct: 289 TALTRVVNDYARKYNLLKENENNLTGEDIREGLTAIISVKVREPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L ++P A ++ E I + R RK RE RK A+ LPGK Sbjct: 349 GIVDAVVVEGVGTFLEEHPPFAKRITEKAINAARAREAARKARELTRRKNALESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ N++ Sbjct: 409 LADCSLKDPAVCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLANEE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A+G + RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE ++ Sbjct: 469 IRAMITAMGTGISDDFDISKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ + Y + + +K+L + + G + + R+KGLGEM QL ET Sbjct: 529 YIAQPPLYKVKKNKIDNYVYSDHELEKLLNQIGREG---VSLQRYKGLGEMNPEQLWETT 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RT+LRV + + + LMG K + R +FIQ A + ++ Sbjct: 586 MNPETRTILRVNLEDAM----IADEIFTILMGDKVEPRREFIQTHAKEVRNLD 634 >gi|295694693|ref|YP_003587931.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912] gi|295410295|gb|ADG04787.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912] Length = 635 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 271/647 (41%), Positives = 392/647 (60%), Gaps = 24/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD S I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY + I V ++ Sbjct: 8 TYDESQIQVLEGLEAVRKRPGMYIGATSSRGLHHLVWEVVDNSIDEALAGYCDHIVVRVN 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIPV HPK K T+E++LT LHAGGKFD Y++SGGLHGVG+SVV Sbjct: 68 PDNSVTVIDNGRGIPVGTHPKL-GKPTVEVVLTVLHAGGKFDGKGYKVSGGLHGVGVSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V V R+ + + Q++SRG+P++PLE+ ++ GT++TF+PDP+IF D F Sbjct: 127 NALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTGTQVTFKPDPEIFEDVV-F 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + A+L+ + ++ ++EF + GG++++++ ++ + Sbjct: 185 QYDILQGRLRELAFLNAGITIILEDARD-------GRRQEFAYQGGIRSFVEYLNRSKEV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + EK VE A+ + + P + S+ N I T EGGTHESG + ALTR Sbjct: 238 LHQPPVYIAAEKDDVM---VEVALQYNDGYVPSLYSFANNIHTHEGGTHESGFKSALTRV 294 Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + ++ +D+ I+SV I +P+F GQTKTKL + + + VE+A Sbjct: 295 INDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESA 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + F +L +NP A K+++ I + R RK RE RK A+ LPGKL DCS Sbjct: 355 FGERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRRKNALEVSSLPGKLWDCSS 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL++VEGDSAGGSAK R+R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 415 KDASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARMDKILSNNEIRAIIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + RY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ PP Sbjct: 475 AIGTGIEPDFDISRARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI +G YA+ ++ + I+ E K +I R+KGLGEM A QL ET MD R Sbjct: 535 LYRIQKGKVVRYAYSDQERDHIVGELKGDVN---DIQRYKGLGEMDAEQLWETTMDPESR 591 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 TLL+V + + + + LMG + + R +FI+ A F+ ++ Sbjct: 592 TLLQVSMQDAI----EADAIFSVLMGDRVEPRREFIEAHAHFVRNLD 634 >gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanogenic archaeon RC-I] gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanogenic archaeon RC-I] Length = 635 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 272/654 (41%), Positives = 393/654 (60%), Gaps = 23/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +N+ + YDASSI++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AGY Sbjct: 1 MSNEVPAQTYDASSIQVLEGLEAVRKRPSMYIGSTDYRGLHHLVYEVVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I+V+++ NG +TV DNGRGIPVE H K+ K LEI++T LHAGGKFDN TY++SGGL Sbjct: 61 NAIDVTINPNGSVTVTDNGRGIPVEMHEKY-KKPALEIVMTILHAGGKFDNRTYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L V V R +F Q++ +G P+ ++ + ++ GT+ TF+PD Sbjct: 120 HGVGVSVVNALSEYLEVEVKRNGKVFFQRYEKGKPVCEVKIIGET-DQTGTKTTFKPDKS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + AYL+ ++ S G + E+++ GG+ +++ Sbjct: 179 IFETV-EFQFDILANRLRELAYLNKGIRITLSD-------LGAQKSAEYHYEGGINQFIE 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++++++ + + EK T VE ++ + + I ++ N I T EGGTH SG Sbjct: 231 YLNQDKTVLHPKPIYFEREKDTT---KVEISMQYNDGYSEVILAFANNINTHEGGTHLSG 287 Query: 334 LRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + YA + + +D+ I+SV + P+F GQTKTKL + D Sbjct: 288 FRAALTRTVNDYARKNNMLKGDMVLSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDV 347 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + D + YL +NP +A K++E ++ + R RK RE RK+A+ LPG Sbjct: 348 KGIVESLVGDGLNDYLEENPADARKIIEKTVQAFQAREAARKARELTRRKSALEGSTLPG 407 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ A EL+IVEGDSAGGSAKQ RNR QA+LPLRGKILNV A KI + Sbjct: 408 KLADCSEKDASKCELYIVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLNKILESA 467 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ ALG + + RY K+I+MTDADVDGAHI +LLLTFFY+ M ++E Sbjct: 468 EIRALITALGTGVGEDFVLDKARYHKIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGF 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI +G + Y + + + LE G+ + I R+KGLGEM QL T Sbjct: 528 VYIAQPPLYRIKKGKEEKYVYSDRELNEALEAM---GRTNVSIQRYKGLGEMNPEQLWST 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RT+ +V++ + + + LMG K + R +FI + A F+ ++ Sbjct: 585 TMDPATRTMYQVKLEDVI----EADRTFTLLMGDKVEPRREFIVKNAKFVKNLD 634 >gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032] gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus SAFR-032] Length = 642 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 389/654 (59%), Gaps = 20/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 A + ++YD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 AMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCT 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V ++ + +TV DNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGLH Sbjct: 64 DITVQIEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS L VTV R I Q+F RG+P+ LE + + GT F PDP+I Sbjct: 123 GVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ V +E E+ + + GG+K+Y++ Sbjct: 182 FTETIEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNE-----YCYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ ++ E + E+ G TVE A+ + + I S+ N I T EGGTHE+G Sbjct: 237 LNRSKEVVHEEPVYIEGERDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGF 293 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + LTR I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A Sbjct: 294 KTGLTRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + ++ + + +L++NP A K++E V+ ++ + RK+A+ LPG Sbjct: 354 RTITDSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N Sbjct: 414 KLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNN 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE + Sbjct: 474 EVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++ QG + Y ++++ ++L+ + K + R+KGLGEM A+QL ET Sbjct: 534 VYIAQPPLYKVQQGKRVEYVYNDKQLDELLKSLSQTPKPG--LQRYKGLGEMNAAQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + RTLL+V + + D ++ LMG K + R FI+E A ++ ++ Sbjct: 592 TMDPDARTLLQVTLEDAI----DADETFEMLMGDKVEPRRNFIEENAQYVKNLD 641 >gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653] gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653] Length = 654 Score = 664 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 272/669 (40%), Positives = 388/669 (57%), Gaps = 24/669 (3%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 +K K + + + Y AS I+ILEGLE VR RPGMYIG T + LHHL E Sbjct: 5 KKNDKIKLLDKFLEGRTMAKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYE 64 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AGY I V++ + +TV D+GRGIP + HPK K +E+ LT LHAG Sbjct: 65 VVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAG 123 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF+N Y++SGGLHGVG+SVVNALS+ L V V ++ +F Q + RG+P +PLE + Sbjct: 124 GKFNNDAYKVSGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE 183 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT ITF+PD +IF + FD L + + A+L+ + +++ E Sbjct: 184 E-TGTIITFKPDKEIFEEIV-FDYDILAQRLRELAFLNKGINIKLIDERDGKE------- 234 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 E F + GGL +++ N+ ++ E + + VE + + + I S+ Sbjct: 235 EVFNYEGGLIAFVKYLNRNKEVLHEEPIYMEAK---NTDYEVEVCMQYNDSYNENIYSFA 291 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP 377 N I T EGGTH G + ALT+ I YA+ + ++ +D+ I+SV ++ P Sbjct: 292 NNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNLQGEDVREGLTAIVSVKLKNP 351 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKT+L + + + VE + + YL +NP A ++E ++ + R RK RE Sbjct: 352 QFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARIIVEKALQAARAREAARKARE 411 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 RK+A+ LPGKLADCS+ ELFIVEGDSAGGSAK RN QA+LPLRGKI Sbjct: 412 LTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGGSAKAGRNSRFQAILPLRGKI 471 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A +KI +N++I ++ ALG + LRY KVIIMTDADVDG+HI +LLL Sbjct: 472 LNVEKARLDKILSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLLL 531 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ M LIE H+++ PPL++IT+G K YA+ + KIL E G+ I + R Sbjct: 532 TFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEI---GRENIVVQR 588 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM A QL ET MD KRT+L+V + + + LMG K + R +FI++ Sbjct: 589 YKGLGEMNADQLWETTMDPEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEK 644 Query: 677 RASFIDDVG 685 A + ++ Sbjct: 645 YAKTVRNLD 653 >gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3] gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52] gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3] gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52] Length = 638 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 2 EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV DNGRGIPV+ H + + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V R I Q++ RG P + L+ + ++ GT F+PDP+IF Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + ++ + K + + GG+++Y++ Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R ++ E E+ G VE A+ + + I S+ N I T EGGTHESG + Sbjct: 234 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 291 MALTRIINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP A K++E ++ ++ + RK+A+ LPGK Sbjct: 351 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N + Sbjct: 411 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE ++ Sbjct: 471 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E + K I R+KGLGEM QL ET Sbjct: 531 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 588 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + D ++ LMG K + R +FI+E A ++ ++ Sbjct: 589 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 637 >gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426] gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426] Length = 638 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 2 EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV DNGRGIPV+ H + + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V R I Q++ RG P + L+ + ++ GT F+PDP+IF Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + ++ + K + + GG+++Y++ Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R ++ E E+ G VE A+ + + I S+ N I T EGGTHESG + Sbjct: 234 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 291 MALTRIINDYARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP A K++E ++ ++ + RK+A+ LPGK Sbjct: 351 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N + Sbjct: 411 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE ++ Sbjct: 471 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E + K I R+KGLGEM QL ET Sbjct: 531 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 588 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + D ++ LMG K + R +FI+E A ++ ++ Sbjct: 589 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 637 >gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61] gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61] Length = 640 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 266/653 (40%), Positives = 388/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTN 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV DNGRGIPV+ H + + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 64 IDVTIGKDNSITVADNGRGIPVDIH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V R I Q++ RG P + L+ + ++ GT F+PDP+IF Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + ++ + K + + GG+++Y++ Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE------YVYEGGIRSYVRHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R ++ E E+ G VE A+ + + I S+ N I T EGGTHESG + Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 293 MALTRIINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP A K++E ++ ++ + RK+A+ LPGK Sbjct: 353 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N + Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE ++ Sbjct: 473 VRAIITALGTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYI 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E + K I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELP--DQPKPTIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + D ++ LMG K + R +FI+E A ++ ++ Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639 >gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061] gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061] Length = 640 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 265/655 (40%), Positives = 388/655 (59%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + ++YD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 1 MAMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V ++ + +TV DNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGL Sbjct: 61 TDITVQIEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L VTV R I Q+F RG+P+ LE + + GT F PD + Sbjct: 120 HGVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD L + A+L+ V +E E+ + + GG+K+Y++ Sbjct: 179 IFTETIEFDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNE-----YCYEGGIKSYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++ ++ E + EK G TVE A+ + + I S+ N I T EGGTHE+G Sbjct: 234 HLNRSKEVVHEEPVYIEGEKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAG 290 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + LTR I YA + ++ +D+ I+S+ +P+F GQTKTKL + + Sbjct: 291 FKTGLTRVINDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ ++ + + +L++NP A K++E V+ ++ + RK+A+ LP Sbjct: 351 ARTITDSLFSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N Sbjct: 411 GKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE Sbjct: 471 NEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPLF++ QG + Y ++++ ++L+ + K + R+KGLGEM A+QL E Sbjct: 531 YVYIAQPPLFKVQQGKRVEYVYNDKQLDELLKTLPQTPKPG--LQRYKGLGEMNATQLWE 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + RTLL+V + + D ++ LMG K + R FI+E A ++ ++ Sbjct: 589 TTMDPDARTLLQVTLEDAI----DADETFEMLMGDKVEPRRNFIEENAQYVKNLD 639 >gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4] gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter tengcongensis MB4] Length = 654 Score = 663 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 272/669 (40%), Positives = 388/669 (57%), Gaps = 24/669 (3%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 +K K + + + Y AS I+ILEGLE VR RPGMYIG T + LHHL E Sbjct: 5 KKNDKIKLLDKFLEGRTMAKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYE 64 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AGY I V++ + +TV D+GRGIP + HPK K +E+ LT LHAG Sbjct: 65 VVDNSIDEALAGYCKNIVVTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAG 123 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF+N Y++SGGLHGVG+SVVNALS+ L V V ++ +F Q + RG+P +PLE + Sbjct: 124 GKFNNDAYKVSGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE 183 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT ITF+PD +IF + FD L + + A+L+ + +++ E Sbjct: 184 E-TGTIITFKPDKEIFEEIV-FDYDILAQRLRELAFLNKGINIKLIDERDGKE------- 234 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 E F + GGL +++ N+ ++ E + + VE + + + I S+ Sbjct: 235 EVFNYEGGLIAFVKYLNRNKEVLHEEPIYMEAK---NTDYEVEVCMQYNDSYNENIYSFA 291 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP 377 N I T EGGTH G + ALT+ I YA+ + ++ +D+ I+SV ++ P Sbjct: 292 NNIDTKEGGTHLIGFKSALTKVINDYAKKYGMIKDGEKNLQGEDVREGLTAIVSVKLKNP 351 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKT+L + + + VE + + YL +NP A ++E ++ + R RK RE Sbjct: 352 QFEGQTKTRLGNPEMRSIVEGVVTEKLSAYLEENPSVARIIVEKALQAARAREAARKARE 411 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 RK+A+ LPGKLADCS+ ELFIVEGDSAGGSAK RN QA+LPLRGKI Sbjct: 412 LTRRKSALENTALPGKLADCSEKDPSKCELFIVEGDSAGGSAKAGRNSRFQAILPLRGKI 471 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A +KI +N++I ++ ALG + LRY KVIIMTDADVDG+HI +LLL Sbjct: 472 LNVEKARLDKIFSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLLL 531 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ M LIE H+++ PPL++IT+G K YA+ + KIL E G+ I + R Sbjct: 532 TFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEI---GRENIVVQR 588 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM A QL ET MD KRT+L+V + + + LMG K + R +FI++ Sbjct: 589 YKGLGEMNADQLWETTMDPEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEK 644 Query: 677 RASFIDDVG 685 A + ++ Sbjct: 645 YAKTVRNLD 653 >gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY] gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5] gi|121887|sp|P05652|GYRB_BACSU RecName: Full=DNA gyrase subunit B gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis] gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis] gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168] gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195] gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5] Length = 638 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 263/652 (40%), Positives = 391/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY I Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + ++ + +TVVDNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGLHGV Sbjct: 62 NIQIEKDNSITVVDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS EL VTV R I Q + RG+P++ LE + + GT F PDP+IF Sbjct: 121 GASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGET-DHTGTTTHFVPDPEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ V +E E+ +++ GG+K+Y++ Sbjct: 180 ETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ ++ E + EK G TVE A+ + + I S+ N I T EGGTHE+G + Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 292 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 + + ++++NP A K+++ + + R+ +K RK+A+ LPGKL Sbjct: 352 ITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M +IE +++ Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ QG + YA++++ +++L+ + K + R+KGLGEM A+QL ET M Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 590 DPSSRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637 >gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1] gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1] Length = 641 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 381/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + +YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY N I+ Sbjct: 10 SGASSYDASQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCNRID 69 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + + V+DNGRGIPV+ HPK K +E+ LT LHAGGKF Y++SGGLHGVG Sbjct: 70 VIIHDDNSIEVIDNGRGIPVDIHPKM-GKPAVEVALTVLHAGGKFGGEGYKVSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L VTV R I Q + RG+ S L + + GT I F+PDP+IF + Sbjct: 129 LSVVNALSEKLRVTVRRNGKIHEQHYERGVATSELRVVGQSKE-TGTTIYFKPDPQIFDE 187 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L + ++L+ V+ + + E F GG+ +++ Sbjct: 188 L-EYSYDTLSHRLRELSFLNRGVRITLTDKRSGQE-------SVFAHSGGIVDFVKFLNR 239 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ +I +E+ +TEK G H VE A+ + + + SY N I T EGGTHE+G + A Sbjct: 240 NKDVIHNEVIYFQTEKDGVH---VEVALQYNDGYVENLFSYANNINTQEGGTHEAGFKTA 296 Query: 338 LTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +YA + ++ +D+ ++SV +REP+F GQTKTKL + + + Sbjct: 297 LTRVVNEYARRLNQLKDNENNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 +++ + + YL ++P A +++E I R RK RE RKTA+ LPGKLA Sbjct: 357 IDSCVTEGVGTYLEEHPSIAKRIIEKAIGAMRAREAARKARELTRRKTALESTSLPGKLA 416 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV + +K+ +N++I Sbjct: 417 DCSFKDPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKVLSNEEIR 476 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + RY ++ +MTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 477 AIITAMGTGIGEDFDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVYI 536 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ + Y + + + LE K G+ + I R+KGLGEM QL ET MD Sbjct: 537 AQPPLYQVKKNRDVRYFYHDNELNRYLE---KTGRDGVTIQRYKGLGEMNPEQLWETTMD 593 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG + + R FIQ A + ++ Sbjct: 594 PKNRTILQVSLED----AAEAELIFTTLMGDRVEPRRDFIQSHAKDVRNLD 640 >gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 638 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 263/652 (40%), Positives = 390/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY I Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + ++ + +TV+DNGRGIPV H K + +E+I+T LHAGGKFD S Y++SGGLHGV Sbjct: 62 NIQIEKDNSITVIDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS EL VTV R I Q + RG+P+S LE + + GT F PDP+IF Sbjct: 121 GASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGET-DHTGTTTHFVPDPEIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ V +E E+ +++ GG+K+Y++ Sbjct: 180 ETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ ++ E + EK G TVE A+ + + I S+ N I T EGGTHE+G + Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 292 GLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 + + ++++NP A K+++ + + R+ +K RK+A+ LPGKL Sbjct: 352 ITDTLFSAALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M +IE +++ Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ QG + YA++++ + +L+ + K + R+KGLGEM A+QL ET M Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKELEDLLKTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 590 DPSSRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637 >gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 637 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 387/654 (59%), Gaps = 21/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 SA Y A SI+ILEGLE VR RPGMYIG T + LHH EV+DNA+DE +AGY Sbjct: 1 MTATSAQSQYTAQSIQILEGLEAVRKRPGMYIGDTATRGLHHCVYEVVDNAVDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V++ +G ++V DNGRGIPV+ HP + E++LT LHAGGKF+N TY++SGGL Sbjct: 61 SEIKVTIHTDGSVSVSDNGRGIPVDPHPSN-GRPACEVVLTVLHAGGKFNNDTYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R + Q+F +GIP++ LE +K GT + F PD + Sbjct: 120 HGVGVSVVNALSSWLELDICRNGKTWGQRFEKGIPVTDLE-GGYETDKSGTTVHFMPDDE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F A L + A+L +K D+E E F++ GGL ++++ Sbjct: 179 IFEEVC-FSAEILGNRLREMAFLIPGLKITLIDDREEKE-------WTFHYEGGLASFVE 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 ++S + + E+ VE + + + E + N I T EGGTH G Sbjct: 231 YLNRDKSSLFPKPIVVSGERDSIF---VEVGLQYNDGYHERLFSFANLIHTMEGGTHVIG 287 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 LR A+TR I + A + + ++ +DL ++SV + +P+F GQTKTKL + + Sbjct: 288 LRSAITRAINESARRNKVLKDKDANLSGEDLKEGLTCVISVKLGDPQFEGQTKTKLGNSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + V++ + + L ++P +++ ++ + R +K RE+ RKTA+ L LPG Sbjct: 348 VKGIVDSIVYEGLLVALDEDPSVLKPVVDKAVKARQAREAAKKARELVRKTAMTGLNLPG 407 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS I E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A ++I +++ Sbjct: 408 KLADCSGRIPENCEVYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDRILSSK 467 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++QALGC + LRY K+IIMTDADVDGAHI++LLLTFFY+ M +L+E + Sbjct: 468 EIRTIIQALGCGIGEDFDTTKLRYHKIIIMTDADVDGAHISTLLLTFFYRYMKELVEGGY 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++L PPL+R+ G S Y ++ + + K GK KI + R+KGLGEM QL ET Sbjct: 528 IYLAQPPLYRVQIGRHSEYIFSDKDLRTFMNSHKDTGK-KIGVQRYKGLGEMNPEQLWET 586 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + R+E++ L + + LMG K + R +FIQ + + ++ Sbjct: 587 TMDPENRVMKRIEVDDAL----AADEYFSILMGDKVEPRREFIQAHSHEVQNLD 636 >gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51] gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2] gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51] gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2] Length = 644 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 268/651 (41%), Positives = 384/651 (58%), Gaps = 24/651 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++Y+A I +LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + IEV Sbjct: 12 PTNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTIEV 71 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++VVDNGRGIPV+ HPK K +E+ LT LHAGGKF S Y++SGGLHGVG+ Sbjct: 72 TIHKDNSISVVDNGRGIPVDIHPKL-GKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGM 130 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS LHV V + I+ Q+F RG + L +V N+ GT ITF PDP+IF D Sbjct: 131 SVVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFED 190 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + ++L+ +V +E +KE +Y GG+ +++ Sbjct: 191 TV-FLFDTLAHRLRELSFLNKKVSITLIDARE-------DKKEVYYHTGGIYDFVKYINR 242 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E + EK G VE ++ + + + SY N I T EGGTHESG + A Sbjct: 243 SKESLHPEPIYFEAEKDGVQ---VEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAA 299 Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR YA + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 300 LTRVANDYARKNNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSI 359 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + +NP K++E I+ S R RK RE RK+A+ LPGKLA Sbjct: 360 VDSITGEGLSAFFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLA 419 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS A E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I N +I Sbjct: 420 DCSWKEAELCEMYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIR 479 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + E RY K++IMTDADVDGAHI LLLTFF++ M L+E ++++ Sbjct: 480 AMITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYI 539 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLF++ +G Y + E K+ +E G+ ++EI R+KGLGEM A QL ET MD Sbjct: 540 AQPPLFKVKKGKDIHYVYSNEELAKLQDEI---GRDRVEIQRYKGLGEMNAEQLWETTMD 596 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG + R +FIQ+ A ++ ++ Sbjct: 597 PAKRTILQVTMEDAIK----ADELFTILMGDVVEPRREFIQDNAQYVRNLD 643 >gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1] Length = 665 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 263/659 (39%), Positives = 383/659 (58%), Gaps = 23/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D + + +Y A+ I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE + Sbjct: 25 DEESAEVTAVEGDYGANQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEVVDNSIDEAL 84 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY IEV++ + +TV DNGRGIPV+ H K +E++LT LHAGGKF S Y++ Sbjct: 85 AGYCTHIEVTIHKDNSITVTDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGSGYKV 142 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS + V V R I F +G+ PL+ + ++ GT + F Sbjct: 143 SGGLHGVGVSVVNALSTNMEVKVKRDGKIHEITFEKGVTKEPLKVVGQT-DETGTLVHFV 201 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD +IF + +D L + ++L+ + + ++ +E FYF GG+ Sbjct: 202 PDAEIFDETV-YDYDTLRHRLRELSFLNRGITIILTDER-----PEEVRQETFYFEGGIS 255 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++++ N+ +I+ E K T VE A+ + I S+ N I T+EGGT Sbjct: 256 SFVEHLNRNKEVINPEPVYFNGTKDTT---VVEIALQYNTSYSENIYSFVNNINTEEGGT 312 Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G + ALTR +A + +++ +D+ ++S+ +REP+F GQTKTKL Sbjct: 313 HLAGFKSALTRAANDFARRQGIIKNNEDNLVGEDIREGLTCVISIKLREPQFEGQTKTKL 372 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y +NP+ + K++E I S R RK RE RK A+ Sbjct: 373 GNSEVRGIVDSIVSEGLSEYFEENPVISKKIIEKSIMASRAREAARKARELTRRKNALEV 432 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K Sbjct: 433 SSLPGKLADCSVKDPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDK 492 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NN++I ++ A G S++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L Sbjct: 493 ILNNEEIRTMITAFGSGIGSEFDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPL 552 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE H+++ PPL++I +G Y + +E + L+E + G I + R+KGLGEM Sbjct: 553 IENGHVYIAQPPLYQIRKGRSHWYTYSDEELAQKLDEIGRDG---ITVQRYKGLGEMNPE 609 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KRT+L+V + ++ LMG K + R +FI+E A+ + ++ Sbjct: 610 QLWETTMDPEKRTVLQVHL----REAEEADSIFTILMGDKVEPRRRFIEEHANLVRNLD 664 >gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242] gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242] Length = 632 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 260/648 (40%), Positives = 385/648 (59%), Gaps = 21/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SD+YDA+ I++LEGLE VR RP MYIG D + LHHL EV+DN++DE +AG+ I+VS Sbjct: 2 SDDYDATHIQVLEGLEAVRKRPSMYIGSVDTRGLHHLVYEVVDNSIDEALAGFCKNIDVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TVVD+GRGIPV+NHPK+ KS LE++LT LHAGGKFD S Y++SGGLHGVG+S Sbjct: 62 INADGSVTVVDDGRGIPVDNHPKY-KKSALEVVLTVLHAGGKFDKSNYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + V V R ++ Q++ RG P S + + GT+ TF PD +IF Sbjct: 121 VVNALSEWMEVEVKRDGKLYYQRYERGAPTSDVTVIGDAKG-TGTKSTFMPDSQIFETT- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L+ + A+L+ ++ + +E E++ F + GG+ ++++ ++R Sbjct: 179 EFSYGTLITRLRELAFLNKGIRITITDSREE-----ELEQDVFEYEGGIISFVEHLNQSR 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 + + + EK+GT VE A+ + + E S+ N I T EGGTH G + ALT Sbjct: 234 TALHKTPIYFEREKEGTI---VEIAMQYTDSYGEYVYSFANNINTYEGGTHLIGFKTALT 290 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 R Y + K + +D+ I+SV + EP+F GQTKTKL + + + V++ Sbjct: 291 RVANDYIKKNNVVKGDEKLTGEDIREGLAAIISVKLTEPQFEGQTKTKLGNSELKGIVDS 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + Y+ +NP A + + ++ R +K RE RK+A+ LPGKLADCS Sbjct: 351 MVSEGLSEYMEENPKVAVIIFQKALDARRAREAAKKARELTRRKSALEIGTLPGKLADCS 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+++VEGDSAGGSAKQ RNR QA+LP RGKI+NV A K+ N +++ L+ Sbjct: 411 EKDPSVSEVYLVEGDSAGGSAKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLI 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G Y E RY KVIIMTDADVDGAHI +L+LTFF++ M LI+ ++++ P Sbjct: 471 TAMGTGIAEDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQP 530 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI +G Y + + LEE ++ + R+KGLGEM QL ET M+ + Sbjct: 531 PLYRIKKGKAEHYVYSDRELAAKLEEIGENNTY---VQRYKGLGEMNPEQLWETTMNPDT 587 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V ++ + + LMG + R FIQ+ A + ++ Sbjct: 588 RTLLQVTMDD----AAAADEMFSVLMGDEVAPRKAFIQKYAKEVVNLD 631 >gi|310657321|ref|YP_003935042.1| DNA gyrase subunit b [Clostridium sticklandii DSM 519] gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [Clostridium sticklandii] Length = 641 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 261/655 (39%), Positives = 390/655 (59%), Gaps = 21/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I++LEGL+PVR RPGMYIG T + LHHL EV+DNA+DE +AG+ Sbjct: 3 TNENKVNHAYGAEQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEVVDNAIDEALAGHC 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I VS+D + +TV DNGRGIPVE HPK KST+E +LT LHAGGKF Y++SGGL Sbjct: 63 DKIYVSIDPDNGITVKDNGRGIPVEIHPK-TGKSTVETVLTVLHAGGKFGAGGYKVSGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS EL V V I+ Q+F+ G+P + LE + RGT + F PD Sbjct: 122 HGVGVSVVNALSKELIVEVKINGKIYRQEFAYGVPQTELEIVGETTE-RGTCVRFMPDDA 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 +F + + L + A+L+ + +E +K F++ GGL +++ Sbjct: 181 VFEET-QYKYDTLEHRLRELAFLNKGIHITLEDKREDLQKVKE-----FHYTGGLVEFVR 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N+S I ++ + ++ TVE A+ + + + S+ N I T EGG H +G Sbjct: 235 YINKNKSPIHDDVIYFEKKQ---GDYTVEIAMQYTDAYVENVYSFANNINTHEGGMHLTG 291 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA+ + + +++ +D+ ++S+ + +P++ GQTKTKL + Sbjct: 292 FKTALTRVINDYAKKSNFLKSKEDNLMGEDIREGLTAVVSIKLPDPQYEGQTKTKLGNPQ 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 A+ VE D +L +NP A +++ + R +K RE RK+ + LP Sbjct: 352 ARSAVETISGDNITIFLDENPASARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ +E+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV + ++I ++ Sbjct: 412 GKLADCAEKDPVKSEIYLVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILSS 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +++ A GC +++ EE LRY K++IMTDADVDGAHI +L+LTFF++ M LIE+ Sbjct: 472 DEIRNMITAFGCGISNEFDEEKLRYHKIVIMTDADVDGAHIRTLILTFFFRYMRPLIEKG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPLFRI +G + Y + ++ + LEE + + +E+ R+KGLGEM A QL + Sbjct: 532 YVYIAQPPLFRIKKGRREEYVYSDKELNERLEEIGRSNQ--VELQRYKGLGEMNAEQLWD 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLLRV I D + LMG K + R FIQE A ++ ++ Sbjct: 590 TTMNPATRTLLRVTIED----ASMADDIFSMLMGDKVEPRRNFIQENAKYVKNLD 640 >gi|268318257|ref|YP_003291976.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252] gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252] Length = 649 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 280/659 (42%), Positives = 383/659 (58%), Gaps = 22/659 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + NY AS+I+ILEGLE VR RP MYIG + LHHL EV+DNA+DE +AGY + Sbjct: 3 TRPAEASNYVASNIQILEGLEAVRKRPAMYIGDVGIRGLHHLVYEVVDNAIDEAMAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ +G +TV DNGRGIPV+ HP +S LE+++TTLHAGGKFD STY++SGGLH Sbjct: 63 RIAVTINEDGSITVEDNGRGIPVDEHP-TEKRSALEVVMTTLHAGGKFDKSTYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDP 213 GVG+S VNALS +L TV R ++ Q ++ G P SP+E+ +R GT + F PDP Sbjct: 122 GVGVSCVNALSRKLIATVKRDGYVWRQTYAYGKPTSPVERVRPMREDEETGTIVQFWPDP 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F L + + AYL+ V+ +E E EE+YF GGL ++ Sbjct: 182 TIFKTV-EFRFDTLAERLRELAYLNRGVRISIEDRREEDESL---RYEEYYFEGGLVEFV 237 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q E R+ I E+ E VE A+ + + + S+ N I T EGGTH + Sbjct: 238 QYLDETRTPIHDEVIYIAGEADDV---VVEVALRYNDGYAENVLSFVNNINTHEGGTHVA 294 Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR +K YAE + + +D ++SV + EP+F GQTKTKL + Sbjct: 295 GFRTALTRTLKAYAEKNNLLKNFKGELSGEDFREGLTAVISVKVPEPQFEGQTKTKLGNS 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + Q V + + +L +P EA ++L+ VI ++ R+ RK RE V RK A+ L Sbjct: 355 EVQGIVAGIVSEHLSRWLEDHPREARRILDKVILAAQARVAARKARELVQRKNALNGSSL 414 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ ELF+VEGDSAGGSAKQARNR QA+LPLRGKILNV A +KI Sbjct: 415 PGKLADCASRDPSKCELFLVEGDSAGGSAKQARNREFQAILPLRGKILNVEKARLDKILE 474 Query: 510 NQQIMDLVQALGC---RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I ++V ALG T + LRY ++IIMTDADVDGAHI +LLLTFFY+++ L Sbjct: 475 NDEIRNIVTALGTGLATTEEDFDLSKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQLRPL 534 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+R+ G YA +E ++I+EE + I R+KGLGEM Sbjct: 535 VEGGYIYIALPPLYRVKVGKTERYAWSDEELRQIVEELTDGQPQRAVIQRYKGLGEMNPE 594 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V + + LMG + R KFI+ A + + Sbjct: 595 QLWETTMNPETRILQQVTVED----AAAADRIFSILMGDAVEPRRKFIERNARYAT-LD 648 >gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7] gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7] gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3] Length = 640 Score = 656 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 266/655 (40%), Positives = 389/655 (59%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY Sbjct: 1 MAMEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I + ++ + +TV DNGRGIPV K + +E+I+T LHAGGKFD S Y++SGGL Sbjct: 61 TDINIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L VTV R I Q + RG+P++ LE +K GT F PDP+ Sbjct: 120 HGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + A+L+ V +E E+ +++ GG+K+Y++ Sbjct: 179 IFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++ +I E + EK G TVE A+ + + I S+ N I T EGGTHE+G Sbjct: 234 YLNRSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAG 290 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + + Sbjct: 291 FKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 A+ + + +L++NP A K++E + + R+ +K RK+A+ LP Sbjct: 351 ARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N Sbjct: 411 GKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE Sbjct: 471 NEVRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++ QG + YA++++ ++L+E + K + R+KGLGEM A+QL E Sbjct: 531 YVYIAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWE 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 589 TTMDPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 639 >gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42] gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42] Length = 638 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 264/652 (40%), Positives = 388/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY I Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + ++ + +TV DNGRGIPV K + +E+I+T LHAGGKFD S Y++SGGLHGV Sbjct: 62 NIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L VTV R I Q + RG+P++ LE +K GT F PDP+IF Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ V +E E+ +++ GG+K+Y++ Sbjct: 180 ETIVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ ++ E + EK G TVE A+ + + I S+ N I T EGGTHE+G + Sbjct: 235 RSKEVVHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 292 GLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 + + +L++NP A K++E + + R+ +K RK+A+ LPGKL Sbjct: 352 ITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE +++ Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ QG + YA++++ ++L+E + K + R+KGLGEM A+QL ET M Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 590 DPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637 >gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531] gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531] Length = 685 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 373/652 (57%), Gaps = 23/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +Y A I++LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY + + Sbjct: 52 TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDTV 111 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV DNGRGIPV+ H +E++LT LHAGGKF Y++SGGLHGV Sbjct: 112 GVTIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS E+ V V R IF+ FSRG+ + L + + GTR+ F PDP+IF Sbjct: 170 GVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPDPEIFT 228 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + ++ E F+F GG+++++ Sbjct: 229 VTT-YSFDTLKHRLRELAFLNHGITITLTDER-----GAEVRSETFHFDGGIRSFVSHLN 282 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I+ E K T VE A+ + + I S+ N I T+EGGTH +G ++ Sbjct: 283 RKKETINEEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR +A ++ ++ +D+ ++S+ +REP+F GQTKTKL + + + Sbjct: 340 ALTRAANDFARRLNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRG 399 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + Y +NP K+L+ + S R RK RE RK A+ LPGKL Sbjct: 400 IVDSIVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKL 459 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L++ H++ Sbjct: 520 RTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I + K Y + ++ + K L+E + G + I R+KGLGEM QL ET M Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDDEQAKKLDELGRDG---VTIQRYKGLGEMNPEQLWETTM 636 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT+L+V + + LMG K + R +FI+E A + ++ Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENAKLVRNLD 684 >gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme DSM 15981] gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme DSM 15981] Length = 638 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 378/649 (58%), Gaps = 19/649 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + IEV++ Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIEVTI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+D+GRGIPV K +E++ T LHAGGKF N Y++SGGLHGVG SV Sbjct: 63 NEDNSITVIDDGRGIPVGIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 VNALS+ L V V I+ Q++ RG + PL+ K GT + F PD +IF + Sbjct: 122 VNALSEWLEVQVYLDGNIYQQRYERGKVMYPLKIVGKCEPHEHGTHVRFLPDKEIFEET- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + A+L+ +K D+E K F++ GG++ ++ + + Sbjct: 181 EFDYDTLKIRLRETAFLTKNLKITLRDDREEEVKEKT-----FHYEGGIREFVAYLNKGK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + ++ + ++G + VE ++ + I ++ N I T EGGTH +G + ALT Sbjct: 236 TPLYEQVIYCEGTREGVY---VEVSLQHNDSYTEGIYTFVNNINTPEGGTHLTGFKNALT 292 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + +D+ I+SV I +P+F GQTK KL + +A+ V+ Sbjct: 293 KTFNDYARKNKLLKENEDSLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARTAVD 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N + + ++L QNP A + E ++ + R+ + RK+A+ + LPGKLADC Sbjct: 353 NVVSEQLTYFLEQNPSVAKSICEKSILAQRARAAARKARDLTRRKSALDGVALPGKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I N +I + Sbjct: 413 SDKNPVNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 472 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 473 ITAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQ 532 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + + YA+ +E IL + + G K I R+KGLGEM A QL ET MD Sbjct: 533 PPLYKVEKNKRIWYAYSDEELNSILTDVGRDGNNK--IQRYKGLGEMDAEQLWETTMDPE 590 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV ++ + S + + LMG + + R +FI+ A + ++ Sbjct: 591 RRILLRVTMDDETQS--ELDLTFTTLMGDQVEPRREFIESNAKRVQNLD 637 >gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208] Length = 638 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 265/652 (40%), Positives = 388/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY I Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + ++ + +TV DNGRGIPV K + +E+I+T LHAGGKFD S Y++SGGLHGV Sbjct: 62 NIEIEKDNSITVKDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L VTV R I Q + RG+P++ LE +K GT F PDP+IF Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ V +E E+ +++ GG+K+Y++ Sbjct: 180 ETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNE-----YHYEGGIKSYVEYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ +I E + EK G TVE A+ + + I S+ N I T EGGTHE+G + Sbjct: 235 RSKEVIHEEPIYIEGEKDGI---TVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKT 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 292 GLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 + + +L++NP A K++E + + R+ +K RK+A+ LPGKL Sbjct: 352 ITDTLFSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M ++IE +++ Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ QG + YA++++ ++L+E + K + R+KGLGEM A+QL ET M Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPG--LQRYKGLGEMNATQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 590 DPATRTLLQVNLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637 >gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC BAA-613] gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC BAA-613] Length = 637 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 252/649 (38%), Positives = 386/649 (59%), Gaps = 20/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I+V++ Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIDVTI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+D+GRGIPV+ K +E++ T LHAGGKF N Y++SGGLHGVG SV Sbjct: 63 NEDNSITVMDDGRGIPVDIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+ L V V + I+ Q++ RG PL+ K + GTR+TF PD +IF + Sbjct: 122 VNALSEWLEVQVYKDGNIYQQRYERGKVTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETV 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K D++ +++ F++ GG+K ++ + + Sbjct: 182 -YDYDTLKIRLRETAFLTKNLKIILKDDRD------EKKEKVFHYEGGIKEFVTYLNKGK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I ++ + ++G + VE ++ + I ++ N I T EGGTH +G + ALT Sbjct: 235 TPIYDQVIYCEGTREGVY---VEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ V+ Sbjct: 292 KTFNDYAREKKLLKDSEDNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVD 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N + + ++L QNP A + E ++ + R+ + RK+A+ + LPGKLADC Sbjct: 352 NIVSEQLTYFLEQNPAVAKSMCEKSILAQRARAAARKARDLTRRKSALDGMALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I N +I + Sbjct: 412 SDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 472 ITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + K YA+ ++ IL+E + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKVEKNKKVWYAYSDDELNSILKEIGRDNSNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV +++ + + + LMG + + R +FI+ A + ++ Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKKVKNLD 636 >gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2] gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2] Length = 640 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 265/653 (40%), Positives = 387/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 EQRVEQAYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + +T+ DNGRGIPV+ H + + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 64 IHVTIGEDNSITIADNGRGIPVDVH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V R I QK+ RG P + L+ ++ ++ GT F+PDP+IF Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDPEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + ++ K +++ GG+++Y++ Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YFYEGGIRSYVRHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R ++ E E+ G VE A+ + + I S+ N I T EGGTHESG + Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 293 MALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L+++P A K++E ++ ++ + RK+A+ LPGK Sbjct: 353 TVTDAVFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N + Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE+ ++ Sbjct: 473 VRAIITALGTGIGEDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYI 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E K I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELPAQ--PKPMIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + D ++ LMG K + R +FI+E A ++ ++ Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639 >gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 685 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 371/652 (56%), Gaps = 23/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +Y A I++LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY + + Sbjct: 52 TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDTV 111 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV DNGRGIPV+ H +E++LT LHAGGKF Y++SGGLHGV Sbjct: 112 GVTIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS E+ V V R IF+ FSRG+ + L + + GTR+ F PDP+IF Sbjct: 170 GVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPDPEIFT 228 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + ++ E F+F GG+++++ Sbjct: 229 VTT-YSFDTLKHRLRELAFLNHGITITLTDER-----GTEVRSETFHFDGGIRSFVSHLN 282 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I+ E K VE A+ + + I S+ N I T+EGGTH +G ++ Sbjct: 283 RKKETINEEPIYFNGVKDDI---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR +A + ++ +D+ ++S+ +REP+F GQTKTKL + + + Sbjct: 340 ALTRAANDFARRLNVLKDKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRG 399 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + Y +NP K+L+ + S R RK RE RK A+ LPGKL Sbjct: 400 IVDSIVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKL 459 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L++ H++ Sbjct: 520 RTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I + K Y + ++ + K L+E + G + I R+KGLGEM QL ET M Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDG---VTIQRYKGLGEMNPEQLWETTM 636 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT+L+V + + LMG K + R +FI+E A + ++ Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENAKLVRNLD 684 >gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 633 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 383/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I+ Sbjct: 2 ANEETYGASQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + ++V+D+GRGIP + HP+ KS +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VVIHKDNSVSVIDDGRGIPTDIHPQ-TGKSGVEVALTVLHAGGKFNNDVYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L V V + ++ QK+ RG+P S L+ ++ GT ITF PD +IF Sbjct: 121 LSVVNALSKRLEVIVKQNGKVYEQKYERGVPKSDLKIIGDT-DETGTTITFAPDDEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + + ++L+ V+ +++ E + F++ GG+ +++ Sbjct: 180 L-EYDYDILSQRLRELSFLNKGVRIRLMDERDGKE-------DVFHYEGGIVEFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E +++ VE A+ + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHPEPIYMESKSDT---YEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV + P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKFNIIKDNDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + ++ +NP + +LE + R RK RE RK+A+ LPGKLA Sbjct: 349 VDSVVTEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ A EL++VEGDSAGGSAK R+ QA+LPLRGKILNV A ++I ++ +I Sbjct: 409 DCSEKDASKCELYLVEGDSAGGSAKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIK 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG S + LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I + K YA+ ++ IL+E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKIEKNKKVYYAYSDKELDNILKEI---GRENYNVQRYKGLGEMDAEQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V ++ + + LMG K + R +FI++ A + ++ Sbjct: 586 PEKRTMLKVSLDDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632 >gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942] gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942] Length = 638 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 260/652 (39%), Positives = 387/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YD + I++LEGLE VR RPGMYIG T+ K LHHL E++DN++DE +AGY + I Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + ++ + +TV DNGRGIPV K + +E+I+T LHAGGKFD S Y++SGGLHGV Sbjct: 62 NIEIEKDNSITVRDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L VTV R I Q + RG+P++ +E + + GT F PDP+IF Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ VK +E E+ + + GG+K+Y++ Sbjct: 180 ETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNE-----YCYEGGIKSYVEYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ ++ E + K G TVE A+ + + I S+ N I T EGGTHE+G + Sbjct: 235 RSKEVVHEEPIYIEGTKDGI---TVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKT 291 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I YA + ++ DD+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 292 GLTRVINDYARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEART 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 + + + +L +NP A K+++ + + R+ +K RK+A+ LPGKL Sbjct: 352 ITDALFSEALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ Sbjct: 412 ADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEV 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + E RY KV+IMTDADVDGAHI +LLLTFFY+ M +IE +++ Sbjct: 472 RSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYIY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ QG + YA++++ +++L + K + R+KGLGEM A+QL ET M Sbjct: 532 IAQPPLYKVQQGKRVEYAYNDKQLEEVLSTLPQTPKPG--LQRYKGLGEMNATQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + RTLL+V + + D ++ LMG K + R FI+ A ++ ++ Sbjct: 590 DPDTRTLLQVTLEDAM----DADETFEMLMGDKVEPRRNFIEANARYVKNLD 637 >gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix rhusiopathiae ATCC 19414] Length = 639 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 261/655 (39%), Positives = 378/655 (57%), Gaps = 21/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +N +Y +S I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+A Sbjct: 1 MSNTKVDHSYTSSDIQVLEGLEAVRKRPGMYIGTTASRGLHHLVWEIVDNGIDEALAGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++D + ++V DNGRGIPV H K ST E I T LHAGGKF Y++SGGL Sbjct: 61 TEIIVNVDKDNVISVSDNGRGIPVGIHAK-TGVSTAETIFTVLHAGGKFGGGAYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V + + +F G ++ K+ +K+GT + F+ DP Sbjct: 120 HGVGASVVNALSEWLEVKIYLDGIEYYLRFEEGGKVAVPLKEVGKTDKKGTTVRFKADPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F L + A+L+ +K + ++E E + F + GL+ Y+Q Sbjct: 180 IFTETTEFSHDVLRDRLRQIAFLNKGIKLVFQDEREPEETRHLE----FVYEDGLREYVQ 235 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+S I EI + E++G VE ++ + + P I S+CN I T EGGTHE G Sbjct: 236 YMNANKSPIHEEIVYCEGEEEGIL---VEVSMQYNDGFTPNIYSFCNNINTHEGGTHEDG 292 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 ++ALTR I YA+ K + DD+ I+SV +P++ GQTKTKL + + Sbjct: 293 FKLALTRVINNYAKEHNLLKKDDDGFLGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSE 352 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V + + + +L+++P +A +++ S+ R+ RK RE RK A+ LP Sbjct: 353 VRKIVSSVFGEQLERFLMEHPDDAKIIVDKAAIASKARVAARKARELTRRKGALEVSSLP 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E++IVEGDSAGGSAKQ R+ QA+LPLRGK++NV A KI +N Sbjct: 413 GKLADCSNRNPSECEIYIVEGDSAGGSAKQGRDSKFQAILPLRGKVINVEKARLHKIFDN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G + + LRY K+IIMTDADVDGAHI +LLLTFFY+ + LIE Sbjct: 473 NEIRMMITAFGTGVSDEMDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRFLRPLIENG 532 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL++I++G K YA++EE ++ EF + + R+KGLGEM QL + Sbjct: 533 FVYIAQPPLYKISRGNKIAYAYEEEELDELKVEFGD----RFNVQRYKGLGEMNPEQLWD 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD RTL++V I+ + + LMG + R +FIQ A + D + Sbjct: 589 TTMDPETRTLIQVTIDDAM----EADVIFETLMGDEVAPRREFIQANAEYAD-LD 638 >gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16] gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16] Length = 640 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 265/653 (40%), Positives = 387/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 EQRVKQAYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + +T+ DNGRGIPV+ H + + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 64 IHVTIGEDNSITIADNGRGIPVDVH-EATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V R I QK+ RG P + L+ ++ ++ GT F+PDP+IF Sbjct: 123 VGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDPEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + ++ K +++ GG+++Y++ Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNE------YFYEGGIRSYVRHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R ++ E E+ G VE A+ + + I S+ N I T EGGTHESG + Sbjct: 236 NRTREVLHEEPIYIAGERDGI---AVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFK 292 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 293 MALTRIINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L+++P A K++E ++ ++ + RK+A+ LPGK Sbjct: 353 TVTDAVFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N + Sbjct: 413 LADCSSRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + RY KVIIMTDADVDGAHI +LLLTFFY+ M +LIE+ ++ Sbjct: 473 VRAIITALGTGIGEDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYI 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E K I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIEQGKQVRYAYNDRQLEKILAELPAQ--PKPMIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + D ++ LMG K + R +FI+E A ++ ++ Sbjct: 591 MNPETRTLLQVSLQDAI----DADETFEILMGDKVEPRRQFIEENARYVKNLD 639 >gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT] gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT] Length = 628 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 261/645 (40%), Positives = 383/645 (59%), Gaps = 26/645 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I+++EGLE VR RP MYIG TD LHHL EV+DN++DE +AGY I V + G Sbjct: 6 YDASHIKVMEGLEAVRHRPSMYIGSTDVHGLHHLVYEVVDNSVDEAMAGYCKEISVVIHG 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G ++V D+GRGIPV+ HP++ N+ +EI++T LHAGGKFD+ TY +SGGLHGVG+SVVN Sbjct: 66 DGSVSVKDDGRGIPVDIHPQY-NRPAVEIVMTVLHAGGKFDHDTYHVSGGLHGVGVSVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V V+R+ ++ Q++ RG P+S L++ V GT + F+PDP+IF F Sbjct: 125 ALSEWLEVEVSREGRVYRQRYERGRPVSDLQETG-VSENTGTTVRFKPDPEIFEVT-DFS 182 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ +K + ++ K F++ GG+ +++Q +++ ++ Sbjct: 183 FDVLSSRLRELAFLNRGLKISITDERSGRSKT-------FHYDGGIISFVQYLNKSKEVL 235 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + +VE A+ + + ++ N I T EGGTH SG R ALT+ + Sbjct: 236 HPNPIYFSRVRDDV---SVEVAMQYNTSYNESVFTFANNINTREGGTHLSGFRAALTKTV 292 Query: 343 KKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 + + + + DDL V ++SV + +P+F GQTKT+L + + VE+ + Sbjct: 293 NDFVREKKLLKGDAKLTGDDLREGLVAVVSVRLPDPQFEGQTKTRLGNSAVRGLVESLVS 352 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 + Y NP A ++E E R RK +E RKTA+ LPGKLADC + Sbjct: 353 EGLMEYFELNPQVAEAIVEKATEAMRAREAARKAKEITRRKTALTSSGLPGKLADCVERD 412 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +EL+IVEG+SAGGSAKQ RNR QAVLPLRGKILNV A +K+ N++I +L+ AL Sbjct: 413 PAKSELYIVEGESAGGSAKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITAL 472 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + RY K+IIMTDADVDG+HI +LLLTFFY+ M LIE ++++ PPL+ Sbjct: 473 GTGIGDDFDITKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPPLY 532 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G YA+ +E K+LE+ GK + R+KGLGEM QL ET M+ KRTL Sbjct: 533 QVRKGKSVKYAYSDEELAKLLED------GKAVVQRYKGLGEMNPEQLWETTMNPEKRTL 586 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV + + + + + LMG + + R FI+ A + ++ Sbjct: 587 LRVTLKDAV----EADEIFSVLMGEQVEPRRVFIETHAREVRNLD 627 >gi|226226219|ref|YP_002760325.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27] gi|226089410|dbj|BAH37855.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27] Length = 658 Score = 653 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 259/663 (39%), Positives = 393/663 (59%), Gaps = 16/663 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 +S A Q + Y A SI +L+GLE VR RPGMYIG T + LHHL EV+DN++DE + Sbjct: 3 NSNAPEAQEDENEYGAHSITVLKGLEAVRKRPGMYIGSTSARGLHHLVYEVVDNSIDEAL 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A +EV++ + ++V D+GRGIPV+ HP +E+ +T LHAGGKFD +TY++ Sbjct: 63 AGFAKRVEVTIHADDSISVEDDGRGIPVDVHP-IEKLPGVELAMTVLHAGGKFDKNTYKV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITF 209 SGGLHGVG+SVVNALSD L V + R F+RG+ + L+ V + GT++ F Sbjct: 122 SGGLHGVGVSVVNALSDVLKVWIKRDGKEHFMDFARGVTTTKLKTLRNVPAKETGTKVWF 181 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF + ++ A L + A+L+ ++ ++ K G P +E F+ GGL Sbjct: 182 KPDATIFQETTRYEWATLANRLRELAFLNKGIQITLRDERPDEMKDGQPREEVFFARGGL 241 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 + ++ N+ + ++ TE+ +E A+ + + + S+ N I T EGG Sbjct: 242 REFVVFLTGNKKPLHQDVVYLDTERDDI---GIEMALQYNDSYADNVFSFVNNINTHEGG 298 Query: 329 THESGLRVALTRGIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 TH +G + ALT I KY E + + I + DD+ +LSV +REP+F GQTK Sbjct: 299 THLTGFKSALTSVINKYIERSSNLNKKDKEIRLSGDDVREGLTAVLSVKVREPQFEGQTK 358 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + +A+ V + + + YL ++P A +++ I S R RK R+ +K A Sbjct: 359 TKLGNSEAEGAVRSVMNELLSQYLEEHPKTANAIIDKAISASRAREAARKARDLTRKKNA 418 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADCS + EL++VEGDSAGGSAKQ RNR+ QA+LPLRGKI+NV A Sbjct: 419 LDVAALPGKLADCSLSDPALCELYLVEGDSAGGSAKQGRNRNFQAILPLRGKIINVEKAR 478 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +K+ +N++I ++ A+G + ++ RY+K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 479 FDKVLSNEEIRTIITAIGTGIKDEFDLGKTRYQKIIIMTDADVDGAHIRTLLLTFFFRQM 538 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGE 622 +LI+ ++++ PPL+R+ +G + YA+ E+ + E G+G I + R+KGLGE Sbjct: 539 RELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKERDSFSERLGGPEGRGNIMVQRYKGLGE 598 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M +QL +T MD RT+LRV + + + LMG + R +FI+ A F+ Sbjct: 599 MNPAQLWKTTMDPETRTMLRVTMEDAV----LADQTFQTLMGDDVEPRRQFIESNARFVS 654 Query: 683 DVG 685 ++ Sbjct: 655 NLD 657 >gi|83588881|ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073] gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073] Length = 634 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 255/651 (39%), Positives = 377/651 (57%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YDAS I+ILEGLE VR RPGMYIG T + LH L E++DN++DE +AG+ + IE Sbjct: 3 QVRNEYDASQIQILEGLEAVRRRPGMYIGNTGVRGLHQLVFELVDNSIDEALAGFCDRIE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ NG LTV DNGRGIPV+ H K +E+ LT LHAGGKF + Y+++GGLHGVG Sbjct: 63 VTIHENGSLTVADNGRGIPVDIHEK-TGLPAVEVALTILHAGGKFGGNGYKVAGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L + V R I+ Q++ RG +S L+ K + GT +TF PD +IF D Sbjct: 122 LSVVNALSEWLEIKVKRNGKIYHQEYRRGQKVSELKVIGKTKG-TGTSVTFYPDGEIFED 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + + Q ++L+ VK + ++ +E +Y GGL +++ + Sbjct: 181 LV-FQDEIIGRRLQELSFLNRGVKIVFRDERNESETT-------YYHTGGLIDFVRHLNK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++++ ++ EK E AI + + I SY N I T EGG+HE G + A Sbjct: 233 NKTVLFNKPLYFSGEKDDVQ---AEIAIQYNDGYNELILSYANNIHTVEGGSHEIGFKTA 289 Query: 338 LTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 LTRVINDYARRFNLLKDAEANLSGEDIREGLTAVISVKVLEPQFEGQTKTKLGNTEVRGI 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + + YL +NP ++++ + R+ + RK A+ LPGKLA Sbjct: 350 VDSLVAENLSAYLEENPTIGRRIVDKALNAFRAREAARKARELTRRKNALEITSLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI NN++I Sbjct: 410 DCTHKDPAMAELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIR 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + RY K I+M DADVDG+HI +LLLTFFY+ M LI + ++++ Sbjct: 470 TIITALGTGIGDDFNINKARYHKTILMADADVDGSHIRTLLLTFFYRYMRPLITEGYIYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ +G Y +++ +K L+E + + EI R+KGLGEM QL ET M+ Sbjct: 530 AQPPLYKVYRGKVERYLYNDAELEKFLKEHEGE---RWEIQRYKGLGEMNPEQLWETTMN 586 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + N LMG + + R +FIQ+ A + ++ Sbjct: 587 PESRTLLQVNLEDAM----EADAIFNILMGDRVEPRREFIQQHAHEVRNLD 633 >gi|323705855|ref|ZP_08117427.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534851|gb|EGB24630.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 633 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 383/648 (59%), Gaps = 24/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y AS I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I+V + Sbjct: 5 ETYGASQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNIDVII 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V+D+GRGIP + HP+ KS +E+ LT LHAGGKF+N Y++SGGLHGVG+SV Sbjct: 65 HKDNSVSVIDDGRGIPTDIHPQ-TGKSGVEVALTVLHAGGKFNNDVYKVSGGLHGVGLSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V + ++ QK+ RG+P + L + ++ GT ITF PD +IF Sbjct: 124 VNALSKNLEVIVKQNGKVYQQKYERGVPKTDLTVIGET-DETGTTITFSPDGEIFETL-E 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + ++L+ VK +++ E + F++ GG+ +++ N+ Sbjct: 182 YDYDVLSQRLRELSFLNKGVKIRLVDERDGKE-------DVFHYEGGIVEFVKYLNRNKE 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E +++ VE A+ + + I S+ N I T EGGTH G + ALT+ Sbjct: 235 VLHPEPIYMESKSDT---YEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKTALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+SV + P+F GQTKTKL + + + V++ Sbjct: 292 VINDYARKFNIIKENDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDS 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + ++ +NP + +LE + R RK RE RK+A+ LPGKLADCS Sbjct: 352 VVTEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCS 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + A EL++VEGDSAGGSAK R+ QA+LPLRGKILNV A ++I ++ +I ++ Sbjct: 412 EKDASKCELYLVEGDSAGGSAKMGRDSKYQAILPLRGKILNVEKARLDRILSSDEIKAMI 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S + LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ P Sbjct: 472 TALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++I + K YA+ ++ IL+E G+ + R+KGLGEM A QL +T MD K Sbjct: 532 PLYKIEKNKKVYYAYSDKELDNILKEI---GRENYNVQRYKGLGEMDAEQLWDTTMDPEK 588 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V ++ + + LMG K + R +FI++ A + ++ Sbjct: 589 RTMLKVSLDDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632 >gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646] gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646] Length = 637 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 261/646 (40%), Positives = 386/646 (59%), Gaps = 20/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD + I +LEGLE VR+RPGMYIG TD + LHHL EV+DN++DE +AG+ I V+++ Sbjct: 7 YDETKIEVLEGLEHVRLRPGMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCKNILVTINK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV D+GRGIPV+ HPK K LE+ LT LHAGGKF Y++SGGLHGVG+SVVN Sbjct: 67 DGSITVDDDGRGIPVKIHPKV-GKPALEVALTMLHAGGKFGTGGYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V V R + Q++ RG P++ ++K + + GT+ITF PD +IF D F+ Sbjct: 126 ALSKWLEVEVKRDGFKYFQRYERGKPVTEVKKIGEASD-TGTKITFMPDDQIFEDT-SFN 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + + +A+L+ +K + +++ F++ GG+ ++++ N+ ++ Sbjct: 184 YDILAQRLREQAFLNRGLKIEIKDLR-------TGKEQVFHYEGGIVSFVKYLNRNKDVL 236 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + + VE A+ + + + S+ N I T EGGTH G + ALTR I Sbjct: 237 HEDPIYMRAASQ-EGEWEVEVALQYNDSYAENVLSFANNINTQEGGTHLVGFKSALTRSI 295 Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA + ++ DD+ ++SV + P+F GQTKTKL + + + VE+ + Sbjct: 296 NDYARKMNLLKEQDPNLSGDDVREGLTAVISVKLVNPQFEGQTKTKLGNSEMRGIVESVV 355 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 D + +L +NP A ++E I + R RK RE V RK A+ + LPGKLADC + Sbjct: 356 GDAMNRFLEENPSVARVIVEKAISAARAREAARKARELVRRKNALDRTSLPGKLADCREK 415 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 EL++VEGDSAGGSAKQ R+ QA+LPLRGKILNV A +KI N++I ++ A Sbjct: 416 DPRLCELYLVEGDSAGGSAKQGRDPRFQAILPLRGKILNVEKARLDKILGNEEIRAMITA 475 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + E LRY K+I+M DADVDGAHI +LLLTF Y+ M LIE +++ PPL Sbjct: 476 LGTGIGDDFDIEKLRYHKIILMADADVDGAHIRTLLLTFLYRYMRPLIEAGMVYIAQPPL 535 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++++G + YA+ +E + ILE K + K E+ RFKGLGEM A QL +T M+ RT Sbjct: 536 YQVSKGKEVYYAYSDEELKAILERLGKD-RDKAEVKRFKGLGEMNADQLWDTTMNPKTRT 594 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V + + + + LMG K + R +FI E A+ + ++ Sbjct: 595 ILKVNLEDAI----EADEIFTILMGEKVEPRRQFIFEHAAEVRNLD 636 >gi|167461556|ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381377|ref|ZP_08055380.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154953|gb|EFX47224.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 636 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 268/648 (41%), Positives = 384/648 (59%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YD S I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ I+V++ Sbjct: 6 NTYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEVVDNSIDEALAGFCTKIDVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV+DNGRGIPV HPK K TLE++LT LHAGGKF Y++SGGLHGVG+SV Sbjct: 66 HEDNSITVIDNGRGIPVGEHPKL-KKPTLEVVLTVLHAGGKFGGEGYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L TV R I+ Q+F RG+P ++ GT ITF+PD +IF + Sbjct: 125 VNALSESLVATVKRDGHIYQQEFKRGVPQYGVKVIGDTDEY-GTVITFKPDAEIFTETTV 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ ++ ++ + + GG+ ++++ +NR Sbjct: 184 YDYEVLQSRIRELAFLNKELEINLKDER-------TGASHSYKYEGGIISFVEYLNQNRE 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ + K VE AI + + I S+ N I T EGGTHESG + ALTR Sbjct: 237 PLNQPPIYVEGNKDNIQ---VEIAIQYNDNFNENIYSFANNIHTHEGGTHESGFKSALTR 293 Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA T + + DD+ I+SV I +P+F GQTKTKL + + + VE+ Sbjct: 294 VINDYARKTNVLKDSNSNLSGDDVREGIAAIISVKIPDPQFEGQTKTKLGNSEVRGIVES 353 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 L + +L +NP A +++E ++ + R RK RE RK+A+ LPGKLADCS Sbjct: 354 LLAEKLQEFLEENPSTAKRIMEKSMQAARAREAARKARELTRRKSALEVSSLPGKLADCS 413 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 414 SKDAAISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNMEIRAII 473 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY K+IIMTDADVDGAHI +LLLTFF++ M LIE ++++ P Sbjct: 474 TALGTGISEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQP 533 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + YA++++ + +I++EF + K+ + R+KGLGEM A QL ET MD Sbjct: 534 PLYKLEKNKTVRYAYNDKQRAEIMKEFGE--GSKVNVQRYKGLGEMNAGQLWETTMDPES 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + + LMG + R FI E A ++ ++ Sbjct: 592 RTLLQVNIEDAIK----ADAIFDMLMGDNVEPRRNFIHEHAKYVTNLD 635 >gi|167038684|ref|YP_001661669.1| DNA gyrase subunit B [Thermoanaerobacter sp. X514] gi|300913756|ref|ZP_07131073.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561] gi|307723227|ref|YP_003902978.1| DNA gyrase subunit B [Thermoanaerobacter sp. X513] gi|166852924|gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514] gi|300890441|gb|EFK85586.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561] gi|307580288|gb|ADN53687.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X513] Length = 633 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK K +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V ++ IF Q + RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L+ + +++ E E F + GG+ ++++ Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIRLIDERDGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG ++ LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ + +IL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI++ A + ++ Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKHAKTVRNLD 632 >gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis] Length = 641 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 257/651 (39%), Positives = 372/651 (57%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + IE Sbjct: 10 NGESTYDASQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCDTIE 69 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + + V DNGRGIPV+ HPK K +E+ LT LHAGGKF Y++SGGLHGVG Sbjct: 70 VIIHEDNSIEVSDNGRGIPVDIHPKM-GKPAVEVALTVLHAGGKFGGEGYKVSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L VTV R + Q + RG+ ++ L+ GT I F+PD IF + Sbjct: 129 LSVVNALSEKLKVTVRRNGKVHEQYYERGVTMTDLKVVGNA-ESTGTTIYFKPDGLIFEE 187 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L + ++L+ VK + ++ F GG+ +++ Sbjct: 188 L-EYSYETLSHRLRELSFLNRGVKITLKDLR-------TGQESIFAHEGGIIDFVKFLNR 239 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337 N+ LI + + EK+G H VE A+ + + E Y N I T EGGTHESG + A Sbjct: 240 NKDLIHPHVIYFQNEKEGVH---VEMALQYNDGYSETLFSYANNINTQEGGTHESGFKTA 296 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I Y + ++ +D+ ++SV +REP+F GQTKTKL + + + Sbjct: 297 LTRVINDYGRRINQIKENDSNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 ++ + + YL +NP K++E + R RK RE RK+A+ LPGKLA Sbjct: 357 TDSCVTEGLSTYLEENPSVGKKVIEKALSAMRAREAARKARELTRRKSALESTSLPGKLA 416 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV + +KI +N++I Sbjct: 417 DCSFKDPSMCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIR 476 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + RY +V +MTDADVDG+HI +LLLTFF++ M LIE ++++ Sbjct: 477 ALITALGTGIGEDFDLSKARYHRVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVYI 536 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ +G Y + + + L+ K+G+ + I R+KGLGEM QL +T MD Sbjct: 537 AQPPLYQVKKGRDVRYYYHDNELNQYLD---KNGRDGVTIQRYKGLGEMNPEQLWDTTMD 593 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG + + R +FIQ A + ++ Sbjct: 594 PEHRTILQVSMED----AAEAESIFTTLMGDRVEPRREFIQSHAKDVRNLD 640 >gi|225181142|ref|ZP_03734588.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1] gi|225168111|gb|EEG76916.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1] Length = 650 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 383/660 (58%), Gaps = 17/660 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 N + +YD S I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE + Sbjct: 2 AEEKNNNPLNNGHYDESHIQVLEGLEAVRRRPGMYIGSTGARGLHHLVFEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ + I ++++ + +TV D+GRGIPV P+ + +E++LT LHAGGKF Y++ Sbjct: 62 AGHCDDIVITIEKDNIITVSDDGRGIPVGIQPQ-TGRPAVEVVLTVLHAGGKFGGEGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS+ L V V R I F+RG + L K + GT+I F+ Sbjct: 121 SGGLHGVGVSVVNALSEWLEVEVHRDGKIHQMSFARGAIVKELTVTGKTKK-TGTQIRFK 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269 PD ++F F L K + A+L+ ++ + ++ E+ ++ KE F + GG+ Sbjct: 180 PDAEVFETV-EFSYETLSKRLRELAFLNKGIRITVADERTELTDETNEKVKETFKYDGGI 238 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGG 328 K++++ +N+ + + + EK+ + VE A+ + + + I S+ N I T EGG Sbjct: 239 KSFVEFLNKNKEPLHKKAIYLEQEKEDCCQ--VEIALQYHDGYNDLILSFANNIHTHEGG 296 Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE+G + ALTR I YA + ++ +D+ ++SV + EP+F GQTKTK Sbjct: 297 THEAGFKSALTRLINDYARKNNLLKENESNVSGEDIREGLTAVISVKLLEPQFEGQTKTK 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIR 445 L + + + V++ L + YL +NP A +L+E V R+ + RK+A+ Sbjct: 357 LGNSEMRGIVDSFLYEELGAYLGENPQMAKRLVEKSVSAARAREAARKARELARRKSALE 416 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC+ EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A + Sbjct: 417 VTSLPGKLADCASRDPAMCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKIINVEKARLD 476 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 KI N++I ++ ALG + + RY K+IIMTDADVDG+HI +LLLTFFY+ M Sbjct: 477 KILANEEIRTIITALGTGISTDFDLAKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQP 536 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LI+ ++++ PPL+ + + K Y + E+ ++L+E + G + R+KGLGEM Sbjct: 537 LIQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGN---SLQRYKGLGEMNP 593 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD KRT+L+V + + D LMG K + R FI+ A+ + ++ Sbjct: 594 EQLWSTTMDPEKRTILQVTMEDAIR----ADDMFTVLMGDKVEPRRVFIESHANQVRNLD 649 >gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 637 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 250/649 (38%), Positives = 383/649 (59%), Gaps = 20/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + IEV++ Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDSIEVTI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TVVD+GRGIPV K +E++ T LHAGGKF N Y++SGGLHGVG SV Sbjct: 63 NEDNSITVVDDGRGIPVGIQKKA-GLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS+ L V V + I+ Q++ RG PL+ K ++ GT++TF PD +IF + Sbjct: 122 VNALSEWLEVQVYKDGDIYQQRYERGKVTYPLKIVGKCSPDQHGTKVTFLPDKEIFEETI 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ ++ D++ +++ F++ GG+K ++ + + Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRITLKDDRD------EKKEKTFHYEGGIKEFVTYLNKGK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + ++ + K+G + VE ++ + I ++ N I T EGGTH +G + ALT Sbjct: 235 TPLYDQVIYCEGSKEGVY---VEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + +D+ I+S+ + EP+F GQTK KL + +A+ V+ Sbjct: 292 KTFNDYARKNKLLKDNEDSLSGEDIREGLTAIISIKVEEPQFEGQTKQKLGNSEARSAVD 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N + + ++L QNP A + E ++ + R+ + RK+A+ + LPGKLADC Sbjct: 352 NIVSEQLTYFLEQNPAIAKAMCEKSIMAQRARAAARKARDLTRRKSALDGMALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I N +I + Sbjct: 412 SDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + K YA+ ++ IL + + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKVEKSKKVWYAYSDDELNSILTDIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV +++ + + + LMG + + R +FI+ A + ++ Sbjct: 590 RRVLLRVTLDE--ETTSEIDLTFTTLMGDQVEPRREFIEANAKRVQNLD 636 >gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 645 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 24/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A+ I+ILEGLE VR RP MYIG T + LHHL EV+DNA+DE +AGY + + V + Sbjct: 17 KEYTANDIQILEGLEAVRRRPSMYIGDTGIRGLHHLVYEVVDNAIDEAMAGYCDQVSVIV 76 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V DNGRGIPV+ HPK NK E++LT LHAGGKFDN Y++SGGLHGVG+SV Sbjct: 77 YPDGSVSVEDNGRGIPVDTHPKV-NKPAAEVVLTILHAGGKFDNKAYQVSGGLHGVGVSV 135 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R + Q++SRG+P L K ++ GT++ F PD IF +K Sbjct: 136 VNALSTWLELIIWRDGMEWHQRYSRGVPQCELTPVGKA-DRTGTKVHFLPDDTIFEEK-D 193 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + A+L +K + + F + GG+ ++++ +++ Sbjct: 194 FSFDVLSSRLREIAFLVPGLKIDLKDLR-------NNKSVAFKYDGGVISFVEYLNRDKN 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E K EK VE A+ + + + ++ N I T EGGTH G R ALTR Sbjct: 247 PLFKEPIYIKGEKDDVL---VEVALQYNDSFQERVFAFANLIHTVEGGTHVVGFRTALTR 303 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + + A + + ++ DDL I+SV ++EP+F GQTKTKL + D + V++ Sbjct: 304 AVNEMARRQKLLKDKDANLSGDDLKEGLTAIISVKLKEPQFEGQTKTKLGNSDVRGIVDS 363 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + D +L + P ++E I+ + R +K RE V RK+A L LPGKLADCS Sbjct: 364 IVYDGLMAFLEEKPDCLRPIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCS 423 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 EL+IVEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A +K+ +N +I ++ Sbjct: 424 SKDPEECELYIVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTII 483 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 QALGC + LRY +VIIMTDADVDGAHI +LLL FFY+ M +IE HL++ P Sbjct: 484 QALGCGIGEDFDVNKLRYHRVIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQP 543 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+ G Y + ++ + + ++ KI + R+KGLGEM QL +T MD N+ Sbjct: 544 PLYRVQAGKSEYYCYSDKELRNMADKL---ANKKISVQRYKGLGEMNPEQLWKTTMDPNE 600 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L RV++ L + LMG K + R +FI+ A+ + ++ Sbjct: 601 RILKRVDVEDAL----AADEYFTILMGDKVEPRREFIESHANEVRNLD 644 >gi|289577274|ref|YP_003475901.1| DNA gyrase subunit beta [Thermoanaerobacter italicus Ab9] gi|289526987|gb|ADD01339.1| DNA gyrase, B subunit [Thermoanaerobacter italicus Ab9] Length = 633 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK K +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V ++ IF Q + RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTELEIIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L+ + +++ E E F + GG+ ++++ Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIRLIDERDGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG ++ LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ ++ +IL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDKELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI+ A + ++ Sbjct: 586 PEKRTILKVTLEDAI----AADEIFTILMGDKVEPRREFIERYAKTVRNLD 632 >gi|20090442|ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina acetivorans C2A] gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina acetivorans C2A] Length = 634 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 252/645 (39%), Positives = 370/645 (57%), Gaps = 21/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ ++V+++ Sbjct: 7 YDASRIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTRVDVTINP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV+DNGRGIP++ HP KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN Sbjct: 67 DGSVTVLDNGRGIPIDPHP-VHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L+V V R + Q++ RG P + +++ GT+ TF+PD +IF F Sbjct: 126 ALSEWLNVEVERDGKKYFQRYIRGKPEAEVQETG-TSEITGTKTTFKPDARIFETT-DFQ 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ + + + E F + GG+ +++ + + + Sbjct: 184 YDILSNRLRELAFLNRGLTINLKDLRSP-----EGQAETFIYSGGIVEFVEYLNKKKQPL 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + ++ VE A+ + + S+ N I T EGGTH G + ALTR Sbjct: 239 HEKPIYFERQRDD---MVVEIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295 Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 Y + + K + DD+ I+SV + EP+F GQTKT+L + + + V++ + Sbjct: 296 NDYIKANKLSKEDAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLVT 355 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 D Y +NP A +LE + + R +K RE RK+A+ LPGKLADCS+ Sbjct: 356 DGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEKD 415 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E++IVEG+SAGGSAKQ R+R QA+LPLRGKILNV + KI N +++ L+ AL Sbjct: 416 PSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITAL 475 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + E RY KVI+MTDADVDGAHI +LLLT F++ M LI+ ++++ PPL+ Sbjct: 476 GTGVSEDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPPLY 535 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 RI +G Y H + + +E + G I R+KGLGEM QL ET M+ RTL Sbjct: 536 RIKKGKSEYYIHSDRELEVKKKELGEKGLA---IQRYKGLGEMNPEQLWETTMNPESRTL 592 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V + L + LMG + + R FI+ A + D+ Sbjct: 593 LQVTLEDALR----ADEIFRVLMGDEVEPRRNFIETHAKEVVDLD 633 >gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] Length = 690 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 255/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D + + +Y A+ I+ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE + Sbjct: 51 DMDSADVTAVDGDYGANQIQILEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEAL 110 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY + I+V+++ + +TVVDNGRGIPV+ H K +E++LT LHAGGKF Y++ Sbjct: 111 AGYCDHIDVTIEKDNSITVVDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGEGYKV 168 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS + V V R I S +F +G+ +PL + GT++ F Sbjct: 169 SGGLHGVGVSVVNALSTSMDVEVKRDGKIHSIRFEQGVTAAPLTVIGETEK-TGTKVHFV 227 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF + L + A+L+ + + +E +++ GG++ Sbjct: 228 PDPEIFTVT-QYSFDTLKHRLRELAFLNQGITIRLVDKRG------EGREESYFYEGGIR 280 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++++ + +I K T VE A+ + + I S+ N I T+EGGT Sbjct: 281 SFVEHLNRKKEVIHPTPIYFNGIKDDT---VVEIAMQYNDSYMENIYSFVNNINTEEGGT 337 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G ++ALTR +A + ++ +D+ ++S+ I EP+F GQTKTKL Sbjct: 338 HLAGFKIALTRAANDFARKQGILKDKDGNLSGEDVREGLTCVISLKIHEPQFEGQTKTKL 397 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y +NP K++E I S R RK RE RK A+ Sbjct: 398 GNSEVRGIVDSIVTEGLTEYFEENPAITKKVIEKAIMASRAREAARKARELTRRKNALEV 457 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K Sbjct: 458 SSLPGKLADCSIKDPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDK 517 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N +I ++ A G + RY K+IIMTDADVDG+HI +LLLTFFY+ M L Sbjct: 518 IFANAEIRTMITAFGTGISDDFDIAKRRYGKIIIMTDADVDGSHIRTLLLTFFYRYMKPL 577 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE+ H+++ PPL++I +G K Y + ++ + L E G+ + R+KGLGEM Sbjct: 578 IERGHVYIAQPPLYQIRKGKKHWYTYSDDELAQKLNEV---GRDNATVQRYKGLGEMNPE 634 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD RT+L+V + ++ + LMG K + R +FI+E A + ++ Sbjct: 635 QLWETTMDPEGRTMLQVRMED----AEEADELFTILMGDKVEPRRQFIEEHAKHVRNLD 689 >gi|307265429|ref|ZP_07546985.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919543|gb|EFN49761.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 633 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK K +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V + I+ Q + RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L + + A+L+ + ++ E E F + GG+ ++++ Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERHGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + + LRY K++IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ + KIL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDKILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI++ A + ++ Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632 >gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680] Length = 636 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 268/655 (40%), Positives = 384/655 (58%), Gaps = 24/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY Sbjct: 1 MNINGSKNEYTALDIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVFEIVDNSIDEAVAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V + + +TV DNGRGIPV+ HPK LE+ILTTLH+G KF S Y ISGGL Sbjct: 61 DEIKVIILDDSTVTVTDNGRGIPVDMHPKM-GIPALEVILTTLHSGAKFGGSGYTISGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L V VAR ++ Q++ RG P++PL + GT+ITF PDP+ Sbjct: 120 HGVGLSVVNALSRWLEVEVARDGQLYHQRYERGKPVTPLAVTGACQ-TTGTKITFSPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F A + + + +YL+ + + E+Y GG++ +++ Sbjct: 179 IFEEIC-FSAEIIGQRLRELSYLNQGTRIVLCDKR-------TGRDVEYYHTGGIRDFVK 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333 +NR +S E + K+GT VE AI + E SY N I T EGGTHE G Sbjct: 231 YLSKNREPLSPEPIYFRIGKEGT---VVEVAIQYNTGYTETLLSYANNIHTQEGGTHELG 287 Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + LTR + +YA+ + +++ +D+ ++SV +++P+F GQTKTKL + Sbjct: 288 FKNGLTRVVNEYAKKQGMLKENEGNLLGEDIREGMTAVISVLVQDPQFEGQTKTKLGNAF 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLP 450 + VE A+ D + +NP A K++E I R RK RE+ R+ + LP Sbjct: 348 IRSLVEGAVSDFVGAFFDENPSLAKKIVEKAIAARRAREAARKARELTRRKNLLDSTSLP 407 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A +K+ +N Sbjct: 408 GKLADCSEKDPALSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKVLSN 467 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L+ A+G + RY ++IIMTDADVDG+HI LLLTFFY+ M LIE Sbjct: 468 EEIRALITAIGTGIGEDFDINKARYHRLIIMTDADVDGSHIRVLLLTFFYRYMRPLIEAG 527 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+ + +G + Y +++ Q+ LE+ G K + R+KGLGEM QL E Sbjct: 528 YVYVAQPPLYELKRGKEVHYIYNDRELQRFLEQ---QGNKKYGVKRYKGLGEMNPEQLWE 584 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V I + + LMG K + R +FIQE A + ++ Sbjct: 585 TTMNPENRTLLQVRIEDAI----AADVIFSSLMGEKVEPRREFIQENARLVTNLD 635 >gi|163760282|ref|ZP_02167365.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43] gi|162282681|gb|EDQ32969.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43] Length = 697 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 443/699 (63%), Positives = 544/699 (77%), Gaps = 20/699 (2%) Query: 3 DDSIDLFSTL-------------PPQSQGSSEKLKKSGEIPDSPAFANQSAS---DNYDA 46 DDS DLFS++ P + S++ + P +P A + A D YDA Sbjct: 2 DDSNDLFSSMGTQAASAEPKTEIPAAAAPQSKQPEAKAAKPQAPKPAAKGAPASGDAYDA 61 Query: 47 SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106 S+I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+AN IEV LD G+ Sbjct: 62 SAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHANFIEVELDAEGY 121 Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166 LTV DNGRGIPVENHPKFP KSTLE+I+T LHAGGKFD+ YE SGGLHGVG+SVVNALS Sbjct: 122 LTVSDNGRGIPVENHPKFPGKSTLEVIMTVLHAGGKFDSKVYETSGGLHGVGVSVVNALS 181 Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226 D+L V +AR ++ Q+FSRGIP LE+ +V N+RGT+I F PD IFG A FD R Sbjct: 182 DDLLVEIARNRCLYRQRFSRGIPQGGLEEAGEVHNRRGTKIRFHPDADIFGAAARFDPGR 241 Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286 L +M +SKAYL G V+ WSCD + E P+K F+FPGGLK YL+ L ++ E Sbjct: 242 LYRMARSKAYLFGGVEIRWSCDPSLVEGTETPDKAVFHFPGGLKDYLEASLGKEHRVTRE 301 Query: 287 IFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346 IF GKTE+ G H G++EWA+ W + I+SYCNTI T EGGTHE+GLR+ALT+G+K YA Sbjct: 302 IFAGKTERPGGH-GSMEWAVTWYGGDAAISSYCNTIPTPEGGTHEAGLRIALTKGLKAYA 360 Query: 347 ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 ELT NKRA +I +DD+MIS++G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDH Sbjct: 361 ELTGNKRASAITTDDVMISSIGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDH 420 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 +L +P EA KLLEWVI+R+EER+RRRK++EVNRKTA+RKLRLPGKLADCSQ + G EL Sbjct: 421 FLADSPAEADKLLEWVIDRAEERVRRRKEKEVNRKTAVRKLRLPGKLADCSQTTSEGAEL 480 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 FIVEGDSAGGSAKQARNRSNQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC TRS Sbjct: 481 FIVEGDSAGGSAKQARNRSNQAILPLRGKILNVASAGREKLGANQQIGDLVQALGCGTRS 540 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 +YREEDLRY+++IIMTDADVDGAHIASLL+TFFYQEM +LI Q HL+L PPL++I+QG Sbjct: 541 KYREEDLRYDRIIIMTDADVDGAHIASLLITFFYQEMPELIRQGHLYLAVPPLYKISQGG 600 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 KS+YA D+ H+ ++LE + G+GK+EI+RFKGLGEML +QLKET MD KRTLL+V + Sbjct: 601 KSLYARDDAHRVELLET-EFTGRGKVEINRFKGLGEMLPAQLKETTMDPAKRTLLKVAV- 658 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ + T+++++ LMGTKAD RF+FIQE A+F D++ Sbjct: 659 -DITDPESTREAVDNLMGTKADARFRFIQEHAAFADNLD 696 >gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125] gi|4033396|sp|O50627|GYRB_BACHD RecName: Full=DNA gyrase subunit B gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.] gi|5672652|dbj|BAA82690.1| 78%-identity [Bacillus halodurans] gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125] Length = 637 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 267/648 (41%), Positives = 384/648 (59%), Gaps = 21/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + I V + Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V R+ + QKF RG+P + LE ++ GT+I F+PD IF + Sbjct: 125 VNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIG-TTDRTGTKIHFKPDGDIFTETTV 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + A+L+ ++ + +E + +EF++ GG+ ++++ R Sbjct: 184 FEYDTLASRLRELAFLNKGLRIKITDMRE------EEKSDEFHYEGGIASFVEHLNRTRE 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + EK+G + VE A+ + + I S+ N I T EGGTHESG + LTR Sbjct: 238 TLHETPIHIEGEKQGVY---VEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+SV I +P+F GQTKTKL + +A+ ++ Sbjct: 295 VINDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + F +L+++P A KL++ + S R +K RE RK+A+ LPGKLADCS Sbjct: 355 LFTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I ++ Sbjct: 415 SRDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAII 474 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + E RY K+IIMTDADVDGAHI +L+LTFFY+ M LIE ++++ P Sbjct: 475 TALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG YA+ + Q+IL + K K I R+KGLGEM SQL ET MD + Sbjct: 535 PLYKVQQGKDIQYAYGDAELQEILSQLP--DKAKPGIQRYKGLGEMNPSQLWETTMDPGQ 592 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG + + R FIQE A ++ ++ Sbjct: 593 RTVLQVTLEDAMK----ADEIFEILMGDRVEPRRDFIQENARYVKNLD 636 >gi|297543507|ref|YP_003675809.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841282|gb|ADH59798.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 633 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 382/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK K +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V ++ IF Q + RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L+ + +++ E E F + GG+ ++++ Sbjct: 180 TV-FNYDVLAQRLRELAFLNKGINIKLIDERDGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVIEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG ++ LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ ++ +IL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDKELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI+ A + ++ Sbjct: 586 PEKRTILKVTLEDAI----AADEIFTILMGDKVEPRREFIERYAKTVRNLD 632 >gi|167036441|ref|YP_001664019.1| DNA gyrase subunit B [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751447|ref|ZP_05492325.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320114866|ref|YP_004185025.1| DNA topoisomerase IV subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855275|gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749666|gb|EEU62692.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319927957|gb|ADV78642.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 633 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 262/651 (40%), Positives = 381/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVRK-PAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V + I+ Q++ RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQRYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L + + A+L+ + +++ E E F + GG+ ++++ Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERDGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG ++ LRY KV+IMTDADVDG+HI +LLLTFFY+ M LIE ++++ Sbjct: 469 AMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ + +IL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDRILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI++ A + ++ Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKHAKTVRNLD 632 >gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE] gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE] Length = 635 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 269/654 (41%), Positives = 391/654 (59%), Gaps = 23/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +N+ + YDASSI++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AGY Sbjct: 1 MSNEIPAQAYDASSIQVLEGLEAVRKRPSMYIGSTDYRGLHHLVYEVVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV+++ +G +TV D+GRGIPVE H K+ + LEI++T LHAGGKFDN TY++SGGL Sbjct: 61 HNIEVTINKDGSVTVSDDGRGIPVEMHEKY-KRPALEIVMTMLHAGGKFDNLTYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L V V R ++ Q++ RG P + + T F+PDP Sbjct: 120 HGVGVSVVNALSEWLRVEVRRNEKLWVQEYVRGKPKDEVHEIGTAIGTG-TTTIFKPDPT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L+ + A+L+ VK + + F++ GG+ ++Q Sbjct: 179 IFETT-EFKYEILVNRLRELAFLNKGVKITLMDARSGV-------SDTFHYEGGIVQFVQ 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 E ++ ++ ++ + +K T VE A+ + + EI ++ N I T EGGTH SG Sbjct: 231 YLNEGKTPVNEKVIYFEKQKDTT---DVEIAMQYNDGYSEIVLAFANNIHTTEGGTHLSG 287 Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR YA+ + + +D+ I+SV + P+F GQTKTKL + D Sbjct: 288 FRSALTRSFNDYAKKNSLLKGDMQFSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDV 347 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 Q V + + + D +L +NP EA K+++ ++ + R RK RE RK+ + LPG Sbjct: 348 QGIVNSLVGEGLDDFLEENPSEARKIIDKAVQAFQAREAARKARELTRRKSVLENTTLPG 407 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ EL++VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +++ ++ Sbjct: 408 KLADCSERDPSKCELYLVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLDRVLTSE 467 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ A+G + + RY K+I+MTDADVDGAHI +LLLTFF++ M LIE + Sbjct: 468 EIRALITAMGTSVGEDFVIDKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGY 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLFR +G + YA++EE ILEE ++G + ++R+KGLGEM QL T Sbjct: 528 VYIAQPPLFRAKKGKEERYAYNEEALAGILEEMGRNG---VAVNRYKGLGEMNPEQLWST 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RT+L+V + + + + LMG K + R FI + A F+ ++ Sbjct: 585 TMDPQTRTVLQVTMEDAV----EADRTFTLLMGDKVEPRRDFIVQNAKFVRNLD 634 >gi|326390355|ref|ZP_08211914.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993632|gb|EGD52065.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW 200] Length = 633 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 264/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y AS I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AKDETYTASQIQILEGLEAVRKRPGMYIGSTGSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRGIP + HPK K +E+ LT LHAGGKF+N Y++SGGLHGVG Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKV-GKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L V V + I+ Q + RG+P + LE + T ITF+PD +IF + Sbjct: 121 VSVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEE 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L + + A+L+ + ++ E E F + GG+ ++++ Sbjct: 180 TV-FDYDVLAQRLRELAFLNKGINIKLIDERHGKE-------EVFNYEGGIISFVKYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + + VE + + + I S+ N I T EGGTH G + A Sbjct: 232 NKEVLHEEPIYMEAK---NSDYEVEVCMQYNDSYNENIFSFANNIDTREGGTHLVGFKAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ I YA ++ +D+ I+SV ++ P+F GQTKTKL + + + Sbjct: 289 LTKVINDYARKYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VEN + + +L +NP A ++E + + R RK RE RK+A+ LPGKLA Sbjct: 349 VENVVTEKLSAFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ ELF+VEGDSAGGSAK RN QA+LPLRGKILNV A +KI +N++I Sbjct: 409 DCSEKDPSKCELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + + LRY K++IMTDADVDG+HI +LLLTFFY+ M LIE ++F+ Sbjct: 469 AMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVFI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT+G K YA+ + KIL E G+ + R+KGLGEM A QL +T MD Sbjct: 529 AQPPLYKITKGKKVYYAYSDRELDKILNEI---GRENYTVQRYKGLGEMNADQLWDTTMD 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V + + + LMG K + R +FI++ A + ++ Sbjct: 586 PEKRTMLKVTLEDAI----AADEIFTILMGDKVEPRREFIEKYAKTVRNLD 632 >gi|153010978|ref|YP_001372192.1| DNA topoisomerase IV subunit B [Ochrobactrum anthropi ATCC 49188] gi|151562866|gb|ABS16363.1| DNA topoisomerase IV, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 704 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 433/706 (61%), Positives = 534/706 (75%), Gaps = 27/706 (3%) Query: 3 DDSIDLFS----------------------TLPPQSQGSSEKLKKSGEIPDSPAFANQSA 40 DDS DLFS + P +Q + + + A SA Sbjct: 2 DDSNDLFSRVVNNARAREREQEQGRQGEKPSEKPVAQPMAAPSLSVPKPVTAKAPPASSA 61 Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SD+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEVS Sbjct: 62 SDDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVS 121 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 D +GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+S Sbjct: 122 FDADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 181 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD L V VAR ++ Q+FSRGIP LE+ +V N+RGTR+ F PDP IFG A Sbjct: 182 VVNALSDMLEVEVARNRRLYRQRFSRGIPQGGLEELGEVHNRRGTRVRFHPDPDIFGKTA 241 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L Sbjct: 242 QFDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGK 301 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ EIF GKTEK+G H G VEWA++W + + SYCNTI T +GGTHE+GLR+ALT Sbjct: 302 EHQVTREIFAGKTEKQGGH-GAVEWAVSWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALT 360 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 RG+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA Sbjct: 361 RGLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 420 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 421 IRDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQN 480 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQA Sbjct: 481 AAAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQISDLVQA 540 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG TR YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM DLI HL+L PPL Sbjct: 541 LGSGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGHLYLAVPPL 600 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FR++QG K YA DE HK ++L G+GK+EI RFKGLGEM A QLKET MD KRT Sbjct: 601 FRLSQGGKVAYARDEAHKDELLRTVF-TGRGKVEIGRFKGLGEMRAEQLKETTMDPKKRT 659 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV+++++ +T++++++LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 LLRVQVDEEYID--ETRNTVDELMGTKPEARFRFIQDRAAFVEELD 703 >gi|294102629|ref|YP_003554487.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261] gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261] Length = 634 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 380/651 (58%), Gaps = 22/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +++ Y A I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE IAGY + I Sbjct: 2 TTSAKQYTAKDIQVLEGLQAVRKRPGMYIGDTGPRGLHHLVYEVVDNSIDEAIAGYCDKI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIP E HP + E++LT LHAGGKFDN Y++SGGLHGV Sbjct: 62 SVVIYEDESVSVADNGRGIPTEPHP-SSGRPASEVVLTILHAGGKFDNQAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +T+ R +Q+F RG+P++ L + + K GT + F PD IF Sbjct: 121 GVSVVNALSEWLEITIQRNGLSRTQRFERGVPVTDLSE-GEPSTKTGTYVRFHPDTTIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F A L + A+L+ + + + EF++ GG+KT+++ Sbjct: 180 EVR-FSADILSGRLREMAFLNPGLAITLEDHRS-------GKCVEFHYEGGIKTFIEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + ++ + E EK G +VE I + + I ++ N I T EGGTH +G R Sbjct: 232 KGKTPLFPEPIVIAGEKDG---ASVEIGIQYNDGYLERIFAFANMIHTIEGGTHVAGFRT 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + + A + ++ ++ +DL +LS+ + P+F GQTKTKL + + + Sbjct: 289 ALTRAVNEVARRAKILREKDENLSGEDLKEGLTCVLSIKLSNPQFEGQTKTKLGNSEIKG 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 ++ + + YL ++ ++E I + R +K RE+ RKTA+ + LPGKLA Sbjct: 349 ITDSVVYEGLLAYLDEHQEVLKPVVEKAIRARQARDAAKKARELVRKTAMTGMNLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS H E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ +N +I Sbjct: 409 DCSSRDPHVCEVYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNVEKARFDKVLSNNEIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++QALGC + LRY K+IIMTDADVDGAHI++LLLTFFY+ M DLI++ HL+L Sbjct: 469 TIIQALGCGIGEDFDHSKLRYNKIIIMTDADVDGAHISTLLLTFFYRYMQDLIDKGHLYL 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ +G Y + E+ + I++ + + R+KGLGEM QL ET MD Sbjct: 529 AQPPLYRVQRGKNVTYCYSEKELRDIVDSTPDSRRA--SVQRYKGLGEMNPDQLWETTMD 586 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L R+E+ + + + LMG K + R FI A + ++ Sbjct: 587 PQNRVLKRIEVEDAM----LADEYFSILMGDKVEPRRDFIAAHAHEVRNLD 633 >gi|315122338|ref|YP_004062827.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495740|gb|ADR52339.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 681 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 572/680 (84%), Positives = 632/680 (92%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62 DDSIDLFSTLPPQ++ SS+K + S ++ + N + SDNYDASSIRILEGLEPVRMRP Sbjct: 2 DDSIDLFSTLPPQNKESSKKFEDSDKLDSTNIHKNHTVSDNYDASSIRILEGLEPVRMRP 61 Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 GMYIGGTDEKALHHLFSEVIDNAMDEVIAG+A+LIEVSLD NGFLTVVDNGRGIPV+NHP Sbjct: 62 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGHADLIEVSLDNNGFLTVVDNGRGIPVDNHP 121 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 KFP+KSTLEII+T LHAGGKFD+STYEISGGLHGVGISVVNALSDEL VTV RQNT+FSQ Sbjct: 122 KFPDKSTLEIIMTKLHAGGKFDSSTYEISGGLHGVGISVVNALSDELEVTVMRQNTVFSQ 181 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 +FSRGIPL PLEK KVRNKRGT I FRPDPKIFG+ A F+A+RL+K+T+SKAYLSGRVK Sbjct: 182 RFSRGIPLGPLEKIGKVRNKRGTSIKFRPDPKIFGENASFNASRLVKITKSKAYLSGRVK 241 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 T WSCDK+IAEKY IPEK EFYFPGGLKTYLQT+L+NRSLISSEIFTGKTE+KG++ G++ Sbjct: 242 TYWSCDKQIAEKYNIPEKTEFYFPGGLKTYLQTRLKNRSLISSEIFTGKTERKGSNPGSI 301 Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362 EWAIAWCEE+PEITSYCNTILTDEGG+HESGLRVALTRGI+KYAELTQNKRA I SDD+ Sbjct: 302 EWAIAWCEEDPEITSYCNTILTDEGGSHESGLRVALTRGIRKYAELTQNKRAALITSDDI 361 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 MISAVGILSVFI EPEFAGQTKTKLVS DAQR VENALRDPFDHYLV+NP+E TKLLEWV Sbjct: 362 MISAVGILSVFIPEPEFAGQTKTKLVSFDAQRIVENALRDPFDHYLVKNPVETTKLLEWV 421 Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 IERSEERLRRRKQ+EVNRKTA+RKLRLPGKLADCSQN+A GTELFIVEGDSAGGSAKQAR Sbjct: 422 IERSEERLRRRKQKEVNRKTAMRKLRLPGKLADCSQNMAKGTELFIVEGDSAGGSAKQAR 481 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 NR+NQA+LPLRGKILNVASAG EKIR +QQI DL+QALGCRTRSQYREEDLRYEKVIIMT Sbjct: 482 NRNNQAILPLRGKILNVASAGLEKIRTSQQISDLIQALGCRTRSQYREEDLRYEKVIIMT 541 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDGAHIASLLLTFFYQEMY LIEQKHLFL+SPPLFRITQG++S+YA DEEHKQ+IL+ Sbjct: 542 DADVDGAHIASLLLTFFYQEMYGLIEQKHLFLVSPPLFRITQGSRSIYARDEEHKQEILK 601 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 +F++ G+GKIEI+RFKGLGEMLASQLKETAMDA KRTLLRVE+ D S + T+DSI+KL Sbjct: 602 DFREKGRGKIEINRFKGLGEMLASQLKETAMDATKRTLLRVELCSDQESFEKTKDSIHKL 661 Query: 663 MGTKADERFKFIQERASFID 682 MGTKADERFKFIQERA+F+D Sbjct: 662 MGTKADERFKFIQERATFVD 681 >gi|295402119|ref|ZP_06812078.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1] gi|294975802|gb|EFG51421.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1] Length = 640 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 263/653 (40%), Positives = 386/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 EQKVEHTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+++ +G +TV DNGRGIPV+ K + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 64 INVTIEKDGSITVTDNGRGIPVDIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+EL V V R I QK+ RG+P + L+ + ++ GT + F+PDP+IF Sbjct: 123 VGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLQVVGET-DRTGTTVHFKPDPEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + K + + GG+++Y++ Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE------YCYEGGIQSYVKHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 R ++ E E+ G + VE A + + S+ N I T EGGTHESG + Sbjct: 236 NRTREVLHEEPIYIIGERDGIY---VEIAFQYNDSYSSNIYSFVNNIHTHEGGTHESGFK 292 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 293 MALTRIINDYARKQQIFKDNDPNLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP A K++E ++ ++ + RK+A+ LPGK Sbjct: 353 TVTDAVFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N + Sbjct: 413 LADCSSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M + IE+ ++ Sbjct: 473 VRAIITALGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYV 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I Q + YA+++ +KIL E ++ K I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIEQDKQVRYAYNDRQLEKILAELPEN--PKPTIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + + ++ LMG K + R +FI+E A ++ ++ Sbjct: 591 MNPETRTLLQVSLQDAI----EADETFEILMGDKVEPRRQFIEENARYVKNLD 639 >gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896] Length = 638 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 385/653 (58%), Gaps = 19/653 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + Y A I++LEGLEPVR RPGMYIG T K LHHL EV+DNA+DE +AG+ Sbjct: 2 SETENKNVQYGADQIQVLEGLEPVRKRPGMYIGSTGAKGLHHLVYEVVDNAIDEALAGFC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V+++ + V+D+GRGIP E HPK KST+E +LT LHAGGKF Y++SGGL Sbjct: 62 KTIYVAIEEGNAIRVIDDGRGIPTEVHPK-TGKSTVETVLTVLHAGGKFGTGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS VTV R I+ Q+FS+GI + L++ V + GT + F+PD + Sbjct: 121 HGVGVSVVNALSTFFRVTVKRGGKIYVQEFSKGISETELQEVG-VTEETGTMVEFQPDAE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + L + A+L+ + + E+ F + GGLK ++ Sbjct: 180 IFDEL-EYRYETLEYRLRELAFLNKGISIVLEDKRAGQEQKKE-----FSYLGGLKEFVV 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ + ++ + K +E AI + + I S+ N I T EGG H G Sbjct: 234 FLNKNKTPLHKDVIHFE---KQIDEYYLEIAIQYTDAYIENIYSFANNINTIEGGMHLIG 290 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 + ALTR I Y + + + S+ +D+ I+S+ + EP++ GQTKTKL + + Sbjct: 291 FKTALTRTINDYLKKSNKNKEESLSGEDVREGLTAIISIKLPEPQYEGQTKTKLGNPQVR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452 V++ L + F YL +NP A ++E + R ++ R++ R+ + LPGK Sbjct: 351 SVVDSFLAEYFGAYLEENPQVAKIIIEKAMNARSAREAAKRARDLTRRKGVLDSTSLPGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS+ +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV + ++I +++ Sbjct: 411 LADCSERDPALSEIYIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILTSEE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +++ A GC ++ E LRY K++IMTDADVDGAHI +LLLTF ++ M LIE ++ Sbjct: 471 IKNMITAFGCSIGEEFDESKLRYHKIVIMTDADVDGAHIRTLLLTFMFRYMKPLIENGYV 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPLF+I +G K VYA++E+ IL+EF + K I R+KGLGEM QL ET Sbjct: 531 YIAQPPLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPG--IQRYKGLGEMNPEQLWETT 588 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ + RTLLRV + D+ + LMG K + R +FI A ++ ++ Sbjct: 589 MNPDTRTLLRVTVED----FSGADDTFSMLMGDKVEPRREFIHNNAQYVKNLD 637 >gi|239833957|ref|ZP_04682285.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301] gi|239822020|gb|EEQ93589.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301] Length = 732 Score = 648 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 432/705 (61%), Positives = 536/705 (76%), Gaps = 26/705 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP---------------------AFANQSAS 41 DDS DLFS + ++ ++ + E P +P A SA Sbjct: 31 DDSNDLFSRVVNNARAREQEQGRQSEKPVAPQPVAQPVAAPSLSVPKPVTAKAPPASSAG 90 Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEVS Sbjct: 91 DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVSF 150 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D +GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 151 DADGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 210 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q+FSRGIP LE +V N+RGTR+ F PDP IFG A Sbjct: 211 VNALSDVLEVEVARNRRLYRQRFSRGIPQGGLEDVGEVHNRRGTRVRFHPDPDIFGKTAQ 270 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L Sbjct: 271 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 330 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E+F GKTEK+G H G VEWA++W + + SYCNTI T +GGTHE+GLR+ALTR Sbjct: 331 HQVTREVFAGKTEKQGGH-GAVEWAVSWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 389 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+ Sbjct: 390 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 449 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 450 RDPFDHWLTASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 509 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DL+QAL Sbjct: 510 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLIQAL 569 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM DLI HL+L PPLF Sbjct: 570 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPDLIRNGHLYLAVPPLF 629 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R++QG K YA DE HK ++L G+GK+EI RFKGLGEM A QLKET MD KRTL Sbjct: 630 RLSQGGKVAYARDEAHKDELLRTMF-TGRGKVEIGRFKGLGEMRAEQLKETTMDPKKRTL 688 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV+++++ +T++++++LMGTK + RF+FIQ+RA+F++++ Sbjct: 689 LRVQVDEEYVD--ETRNTVDELMGTKPEARFRFIQDRAAFVEELD 731 >gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia ATCC 43541] gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia ATCC 43541] Length = 685 Score = 648 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 371/652 (56%), Gaps = 23/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +Y A I++LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY + + Sbjct: 52 TAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDNV 111 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV + + +TV DNGRGIPV+ H +E++LT LHAGGKF Y++SGGLHGV Sbjct: 112 EVVIHKDNSITVTDNGRGIPVDMHE--SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGV 169 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS + V V R I+ F+RG+ ++ L + + GTR+ F PDP+IF Sbjct: 170 GVSVVNALSSSMEVEVRRDGKIYEISFTRGVTVNKLHEIG-ISETTGTRVHFVPDPEIFT 228 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + ++ E+ F+F GG+++++ Sbjct: 229 VTT-YSFETLKHRLRELAFLNHGITITLVDERGEEERRET-----FHFEGGIRSFVSHLN 282 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I+ E K T VE A+ + + I S+ N I T+EGGTH +G ++ Sbjct: 283 RKKETINEEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKI 339 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR +A + ++ +D+ ++S+ +REP+F GQTKTKL + + + Sbjct: 340 ALTRAANDFARRLSVLKDKDGNLSGEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRG 399 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + Y +NP K+LE + S R RK RE RK A+ LPGKL Sbjct: 400 IVDSIVTEGLTEYFEENPAITKKVLEKGLMASRAREAARKARELTRRKNALEVSSLPGKL 459 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 460 ADCSVKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEI 519 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L++ H++ Sbjct: 520 RTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVY 579 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I + K Y + +E + K L+E + G + I R+KGLGEM QL ET M Sbjct: 580 IAQPPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDG---VTIQRYKGLGEMNPEQLWETTM 636 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT+L+V + + LMG K + R +FI+E A + ++ Sbjct: 637 NPEGRTMLQV----GAEDAEAADELFTILMGDKVEPRRQFIEENARLVRNLD 684 >gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174] gi|149831923|gb|EDM87009.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174] Length = 641 Score = 648 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 262/648 (40%), Positives = 382/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ I+V+++ Sbjct: 7 EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIQVTIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 67 PDNSITVVDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R+ + Q++ RG + PL++ + GT++TF PD +IF + Sbjct: 126 NALSEWLEVTICREGKKYQQRYERGHTMYPLKEIGVCDPEETGTKVTFLPDKEIFEETI- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L+ ++ +E EK F++ GG++ ++ ++ Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLKDTREDQEKEKA-----FHYEGGIREFVTYLNRSKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E+ + EK G VE A+ + + N I T EGGTH G R ALT+ Sbjct: 240 ALYPEVIYCEGEKDGVM---VEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTK 296 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ DD+ I+SV I EP+F GQTK KL + +A+ V+ Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDF 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 357 VVSKQLEIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L P Sbjct: 477 TAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+D+ ILE+ + K I R+KGLGEM A QL ET MD K Sbjct: 537 PLYKVEKNKKVWYAYDDAELNSILEQIGRDNNNK--IQRYKGLGEMDAEQLWETTMDPEK 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ ++ + + LMG K + R +FI+E A F++++ Sbjct: 595 RILLRVTMDE--SATSEIDLTFTTLMGDKVEPRREFIEENARFVENLD 640 >gi|295135619|ref|YP_003586295.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87] gi|294983634|gb|ADF54099.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87] Length = 646 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 262/661 (39%), Positives = 397/661 (60%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y A SI+ LEG+E VRMRP MYIG T + LHHL EV+DN++DE +AG+ Sbjct: 1 MSEEAKEKKYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V ++ + +TV DNGRGIP++ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DAIKVDINEDNSITVEDNGRGIPIDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L TV R I+ Q++ G P+ P++ + GT +TF+PDP Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGQIWEQEYEIGKPMYPVKPVGET-ELSGTIVTFKPDPS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L K + A+L+ ++ + +E EK EEF+ GLK +++ Sbjct: 179 IFQQTLEYSYETLAKRMRELAFLNKGIRIVLTDKREKDEKG-EFLSEEFHSEEGLKEFIR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 R I +++ + + EK G VE A+ + + E Y N I T EGGTH SG Sbjct: 238 FLDGTREPIIADVISMEGEKNGIP---VEVALVYNDTFNENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + + DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTTTLKKYADASGLLEKVKFEVTGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + ++YL +NP +A +++ VI ++ R +K RE+ RKTA+ LP Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTAMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A S ++ +N Sbjct: 415 GKLSDCSEQDPKKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMSHRVFDN 474 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY K++IM DADVDG+HI +L+LTFF++ M + Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIETLILTFFFRYMKE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIEQ H+++ +PPL+ + +G+K YA +E+ + +I +E+ G I+I R+KGLGEM A Sbjct: 535 LIEQGHIYIATPPLYLVKKGSKKRYAWNEKERDEIADEYS----GGIQIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD +R L +V I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMDPERRKLRQVTID----NSGEADRIFSMLMGDEVPPRREFIEKNAKYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 640 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 265/648 (40%), Positives = 387/648 (59%), Gaps = 21/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + I V++ Sbjct: 9 QSYDESQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEAMAGYCDTITVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 69 EEDNSITVEDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L V V + Q F RG+P + L+ + +K GT I F+PD +IF + Sbjct: 128 VNALSTKLEVEVHLDGKVHYQMFERGVPSADLKVIGET-DKTGTIIKFKPDNEIFTETTE 186 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ ++ S + +K +++ GG+ ++++ + Sbjct: 187 YDYDTLANRLRELAFLNRGLRILISDKRNDGKKAE------YFYEGGISSFVEHLNRTKE 240 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I ++EK G +VE A+ + + + S+ N I T EGGTHESG + ALTR Sbjct: 241 PIHEPPVFIESEKDGI---SVEIAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTR 297 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++I DD+ I+SV I +P+F GQTKTKL + +A+ ++ Sbjct: 298 VINDYARKNSLFKETDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDS 357 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + Y+ +NP A K++E I S R +K RE RK+A+ LPGKLADCS Sbjct: 358 LFSEHMAKYMAENPNVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCS 417 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV + +KI +N ++ ++ Sbjct: 418 SKDATISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAII 477 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ ++++ P Sbjct: 478 TALGTGIGGDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGYVYIAQP 537 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLF+I QG YA++E+ ++I++E + K + R+KGLGEM +QL ET MD + Sbjct: 538 PLFKIQQGKTVQYAYNEKEMERIIKELAETPKPG--LQRYKGLGEMNPTQLWETTMDPST 595 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT L+V + + ++ LMG K + R +FIQ A ++ ++ Sbjct: 596 RTTLQVTLEDAMV----ADETFETLMGDKVEPRREFIQANAQYVKNLD 639 >gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9] gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9] Length = 636 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 261/648 (40%), Positives = 378/648 (58%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YD S I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG+ I+V + Sbjct: 6 NTYDESQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEVVDNSIDEALAGFCTHIDVIV 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TVVDNGRGIPV + K KST+E+++T LHAGGKF Y++SGGLHGVG+SV Sbjct: 66 HEDNSITVVDNGRGIPVGENTKL-KKSTVEVVMTVLHAGGKFGGEGYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ + VTV R ++ Q++ RG P ++ GT + F+PDP+IF + Sbjct: 125 VNALSEHVTVTVKRDGHVYQQEYRRGAPQYDIKVIGDSEE-TGTIVQFKPDPEIFTETTV 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + A+L+ + + ++ + + + GG+ +++ NR Sbjct: 184 YEYEILQSRIRELAFLNKGISISLTDER-------TGQSNIYKYDGGIIEFVKYLNRNRE 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + + EK VE A+ + + + S+ N I T EGGTHESG + ALTR Sbjct: 237 ALHETPIYVEGEKDHIQ---VEVALQYNDSYSDNIYSFANNINTHEGGTHESGFKSALTR 293 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA T ++ DD+ I+SV I EP+F GQTKTKL + + + VE+ Sbjct: 294 IINDYARRTNSIKDNDSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVES 353 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + +L +NP + +++E ++ S R RK RE RK+A+ LPGKLADCS Sbjct: 354 FFAEKLQEFLDENPSVSKRIVEKGLQASRAREAARKARELTRRKSALEVSSLPGKLADCS 413 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I N +I ++ Sbjct: 414 SKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAII 473 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M +I+ +++ P Sbjct: 474 TALGTGIGDDFDIAKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQP 533 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLF++ + YA E+ + +I+ EF + K+ + R+KGLGEM A+QL ET MD Sbjct: 534 PLFKVERNKVVRYAQSEKERDQIIAEFGE--GVKVNVQRYKGLGEMNATQLWETTMDPES 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V I + + + LMG + R FI + A ++ ++ Sbjct: 592 RTMLQVTIEDAM----EADVVFDTLMGDNVEPRRDFIHQYAKYVKNLD 635 >gi|282855958|ref|ZP_06265249.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455] gi|282586177|gb|EFB91454.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455] Length = 632 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 267/648 (41%), Positives = 384/648 (59%), Gaps = 21/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGL+PVR RPGMYIG T + LHH EV+DN++DE + G+ + I V+ Sbjct: 2 STQYTAEDIQILEGLDPVRKRPGMYIGDTTTRGLHHCVYEVVDNSVDEALGGFCSEITVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V DNGRGIPV+ HP + LE++LT LHAGGKFDN Y+ISGGLHGVG+S Sbjct: 62 LHADQSVSVSDNGRGIPVDPHPSN-GRPALEVVLTVLHAGGKFDNHNYKISGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VTV R + ++F RG P+S L RGT +TFRPD +IF + Sbjct: 121 VVNALSEWLEVTVYRDGREWHERFERGTPVSGLTGGTPTAK-RGTTVTFRPDAEIFDEV- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A L + A+L +K + + + +++ GG+ ++ + + Sbjct: 179 AFSAETLGNRFREMAFLIPGLKFIFVDE-------AEGKTWTYHYEGGVSEFVAYINKGK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + EK G VE + +E + S+ N I T EGGTH +GLR ALT Sbjct: 232 QTLTPRPIVIRGEKDGV---AVEAGFQYTDEYIERLYSFANLINTIEGGTHVAGLRSALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 RGI + A ++ ++ DDL +LSV + P+F GQTKTKL + + + V+ Sbjct: 289 RGINEGARRAGVLKEKDENLSGDDLREGLTCVLSVKLGNPQFEGQTKTKLGNGNVKGIVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + L D L ++P ++E I+ + R +K RE+ RK+A+ L LPGKLADCS Sbjct: 349 SLLYDGILQALEEDPSVIKPIIEKAIKARQAREAAKKARELVRKSALSGLSLPGKLADCS 408 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ +++I ++ Sbjct: 409 SRTAENCEVYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARMDKMLGSKEIRVII 468 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 QALGC + LRY K+IIMTDADVDGAHI++LLLTFF++ M +LIE+ H++ P Sbjct: 469 QALGCGIGEDFDIGKLRYNKIIIMTDADVDGAHISTLLLTFFFRHMRELIEKGHVYQAVP 528 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+ G K Y + ++ +K ++ GK K + R+KGLGEM QL ET MD Sbjct: 529 PLYRVQVGKKVDYLYSDKELRKFMDGLAADGK-KAAVQRYKGLGEMNPGQLWETTMDPAT 587 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L ++E++ L + + LMG + + R +FI++ A + ++ Sbjct: 588 RLLKQIELDD----LAGADEYFDILMGDRVEPRRQFIEQHAHEVHNLD 631 >gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5] Length = 641 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 260/648 (40%), Positives = 377/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ I V ++ Sbjct: 7 EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIHVDIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 67 PDNSITVTDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R+ + Q++ RG + PL+ GT++ F PD +IF + Sbjct: 126 NALSEWLEVTIYREGKEYKQRYERGKTMYPLKVVGDCDPGLSGTKVYFLPDKEIFEETV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L+ ++ +E E+ + F++ GG++ ++ ++ Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLEDKREGQEREKV-----FHYEGGIREFVSYLNRSKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + EK G +VE A+ + + N I T EGGTH +G R A+T Sbjct: 240 ALYPEIIYCEGEKDGV---SVEVALQHNDSYTENTYGFVNNINTPEGGTHITGFRNAITN 296 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ DD+ I+SV I P+F GQTK KL + +A+ V++ Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDS 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 357 VVSKQLEIFLEQNPAVAKATVEKSVLAQRAREAARKARDLTRRKSALDSMSLPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV A +KI N++I ++ Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDKIYGNKEIKAMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L P Sbjct: 477 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+D++ IL E + G K I R+KGLGEM A QL ET MD K Sbjct: 537 PLYKVEKNKKVWYAYDDDELNNILTEIGRDGNNK--IQRYKGLGEMDAEQLWETTMDPEK 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ + + + LMG K + R +FI+E A F+ ++ Sbjct: 595 RILLRVTMDEA--ATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLD 640 >gi|295108649|emb|CBL22602.1| DNA gyrase subunit B [Ruminococcus obeum A2-162] Length = 641 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 260/648 (40%), Positives = 381/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ I+V+++ Sbjct: 7 EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFCTEIQVTIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 67 PDNSITVVDNGRGIPVGVNHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 NALS+ L V++ + + Q++ RG + PL+ K GT +TF PD +IF + Sbjct: 126 NALSEWLEVSIYHEGKEYKQRYERGHTMYPLKVVGDCEEGKTGTTVTFLPDKEIFEETV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L+ ++ ++E ++K F++ GG++ ++ ++ Sbjct: 185 YDYDILKQRLREMAFLTKGLRIVLKDEREDSKKEKT-----FHYEGGIREFVTYLNRSKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E+ + EK G VE A+ + + N I T EGGTH G R ALT+ Sbjct: 240 SLYPEVIYCEGEKDGV---AVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTK 296 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ DD+ I+SV I EP+F GQTK KL + +A+ V+ Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDF 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 357 VVSRQLEIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMALPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK ARNR+ QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 417 DKDPKNCEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L P Sbjct: 477 TAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+D+ ILE+ + K I R+KGLGEM A QL ET MD K Sbjct: 537 PLYKVEKNKKVWYAYDDAELNSILEQIGRDNNNK--IQRYKGLGEMDAEQLWETTMDPEK 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ ++ + + LMG K + R +FI+E A F++++ Sbjct: 595 RILLRVTMDE--SATSEIDLTFTTLMGDKVEPRREFIEENARFVENLD 640 >gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219] gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219] Length = 634 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 261/647 (40%), Positives = 390/647 (60%), Gaps = 21/647 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D YDA+ I++LEGLE VR RP MYIG D + LHHL EV+DN++DE +AGY I+VS+ Sbjct: 5 DVYDATHIQVLEGLEAVRKRPSMYIGSIDGRGLHHLVYEVVDNSIDEALAGYCTSIDVSI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D+GRGIP + H K+ KS LE+++T LHAGGKFD S+Y++SGGLHGVG+SV Sbjct: 65 NRDGSVTVRDDGRGIPTDIHSKY-KKSALEVVMTILHAGGKFDKSSYKVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ V V R IF Q++ RG PL + +K GT +TF+PD IF Sbjct: 124 VNALSEWNDVEVHRNGKIFYQRYVRGKPLDDVIEKGDT-ESTGTSMTFKPDTDIFETV-D 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L+ + A+L+ +K + + P +E F + GG+ ++++ ++R+ Sbjct: 182 FNFETLVTRLRELAFLNRGIKIVITDKRSD-----EPLQEVFEYDGGIVSFVEYLNKSRN 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 ++ + + EK+ T VE A+ + + E S+ N I T EGGTH +G + ALTR Sbjct: 237 VLHEQPIYFEREKEDT---RVEIAMQYTDSYGEYVYSFANNINTHEGGTHLAGFKSALTR 293 Query: 341 GIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 YA+ + I + DD+ GI+SV + +P+F GQTKTKL + + + V++ Sbjct: 294 VANDYAKSNNLAKGDIKLSGDDIREGLAGIISVKLMDPQFEGQTKTKLGNSELKGIVDSM 353 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + ++ +NP A+ +L+ ++ R +K RE RK+A+ LPGKLADCS+ Sbjct: 354 VSEGLSEFMEENPKIASAILQKAMDARRAREAAKKARELTRRKSALEVSTLPGKLADCSE 413 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +E+++VEGDSAGGSAK R+R QA+LP RGKILNV + +I N +I+ L+ Sbjct: 414 KDPSVSEIYLVEGDSAGGSAKMGRDRRFQAILPFRGKILNVEKSRLARILKNNEILSLIT 473 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G +Y RY KV+IMTDADVDGAHI +L+LTFF++ M LI+ ++++ PP Sbjct: 474 AMGTGIGDEYDLTKARYHKVVIMTDADVDGAHIRTLMLTFFFRYMTPLIDAGYVYIAQPP 533 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+ I +G +A+ E K +I+EE + G + I R+KGLGEM QL ET M+ R Sbjct: 534 LYSIKKGKNQRFAYTEREKDRIIEEIGEKG---VSIQRYKGLGEMNPDQLWETTMNPQTR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V + + + + LMG + R KFIQE A + ++ Sbjct: 591 TILQVTMEDAV----AADEMFSVLMGDEVAPRRKFIQEHAKDVINLD 633 >gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70] gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70] Length = 640 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 263/653 (40%), Positives = 386/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YDAS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 4 EQKIEHTYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGYCTE 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+++ + + + DNGRGIPV+ K + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 64 INVTIEKDNIIAITDNGRGIPVDIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+EL V V R I QK+ RG+P + LE + ++ GT + F+PDP+IF Sbjct: 123 VGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLEVIGET-DRTGTTVRFKPDPEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K + K +++ GG+K+Y++ Sbjct: 182 TETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE------YHYEGGIKSYVKHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 R ++ E E+ G + VE A+ + + S+ N I T EGGTHESG + Sbjct: 236 NRTREVLHEEPIYIIGERDGIY---VEIALQYNDSYSSNIYSFVNNIHTHEGGTHESGFK 292 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA Q + ++ +D+ I+S+ P+F GQTKTKL + DA+ Sbjct: 293 TALTRIINDYARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP A K++E ++ ++ + RK+A+ LPGK Sbjct: 353 AVTDAIFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N + Sbjct: 413 LADCSSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M + IE+ ++ Sbjct: 473 VRAIITALGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYV 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG + YA+++ +KIL E ++ K I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIEQGKQVKYAYNDRQLEKILAELPEN--PKPTIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V + + + ++ LMG K + R +FI+E A ++ ++ Sbjct: 591 MNPETRTLLQVSLQDAI----EADETFEILMGDKVEPRRQFIEENARYVKNLD 639 >gi|167770843|ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM 17241] gi|167666883|gb|EDS11013.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM 17241] Length = 662 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 256/650 (39%), Positives = 371/650 (57%), Gaps = 19/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ IEV Sbjct: 26 EQEYDGSQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNSIDEALAGHCTKIEVD 85 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + V DNGRGIPV PK + ++ T LHAGGKF S Y++SGGLHGVG S Sbjct: 86 LLPGNIVKVSDNGRGIPVGIQPKL-GIPAVTVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 144 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V V + + Q+F RG+ + PL+ +GT + F+ D IF + Sbjct: 145 VVNALSEWLEVEVCDGSARYYQRFERGVAVEPLKNTGPTEE-KGTSVAFKADAAIFEETT 203 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D LL+ + +A+L+ V + P +E ++ GG++++++ +++ Sbjct: 204 EYDYDTLLRRLREQAFLNAGVYIVLRDQR-----GTEPVEEHLHYEGGIRSFVEHIHKSK 258 Query: 281 --SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337 I EI T E A+ + + + I S+ N I T +GGTHESG + A Sbjct: 259 GVEPIHDEIIYLAARDGDN---TAEVAMQYNDSYTDLILSFANNIHTTDGGTHESGFKTA 315 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LTR + YA + K +D++ I+SV + + +F GQTK +L + + V Sbjct: 316 LTRTMNDYAHKYKLLKDDEKFSGEDVLEGLTAIVSVKLTDAQFEGQTKARLGNTQMRAMV 375 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLAD 455 + + + Y +NP A ++E I S R R+ R+V R K+A+ LPGKLAD Sbjct: 376 SSLVYEKLTTYYEENPAVAKAIIEKSINASRAREAARRARDVARRKSALETASLPGKLAD 435 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CSQ GTE++IVEGDSAGGSAK R+R QA+LPL GK+LNV A +K+ N ++M Sbjct: 436 CSQRGRDGTEIYIVEGDSAGGSAKMGRDRRFQAILPLWGKMLNVEKARLDKVYGNDKLMP 495 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG ++ E LRY KVIIM DADVDG+HI +LLLTFF++ M LIE H+ + Sbjct: 496 VITALGTGIGDEFDIEKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEHGHVCIA 555 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLF++++G + YA +E + + + E G GK ++ R+KGLGEM QL ET MD Sbjct: 556 QPPLFKVSRGKQVRYAFSDEERDQYIRELCPDGSGKADVQRYKGLGEMDPEQLWETTMDP 615 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+LRVE+ + + LMG K R FI++ A ++ ++ Sbjct: 616 RNRTMLRVEMADAIR----ADEIFTVLMGDKVAPRKDFIEQNAKYVQNLD 661 >gi|237736253|ref|ZP_04566734.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817] gi|229421601|gb|EEO36648.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817] Length = 635 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 372/649 (57%), Gaps = 20/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY IEVS Sbjct: 2 SNNYQAEDITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCTHIEVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + VVDNGRGIPV+ HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+S Sbjct: 62 ILPDNVIEVVDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS V V + ++ QK++RGIP +++ GT + F+ D +IF Sbjct: 121 VVNALSLWTEVEVRKNGKVWYQKYNRGIPEEAVKEIGITEEH-GTTVRFKADHEIFETLV 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + AYL+ + + ++ K E F F GG+ +L+ E+ Sbjct: 180 -YDYNTLKNRLKELAYLNKGLVITLTDSRKEPFKK-----EIFEFEGGIADFLREITEDT 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339 + E E VE A + ++ I S+ N I T EGGTH G R ALT Sbjct: 234 EKLIKEPIYMTGEVDNI---GVEIAFLYTVNQSEIIYSFVNNINTHEGGTHVQGFRTALT 290 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I + + + D+ I+SV + +P+F GQTKTKL + + V Sbjct: 291 RIINDVGKAQGLLKDKDGKLQGTDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKLADC 456 + L NP + ++E ++ + R ++ RE+ RK+A+ LPGKLADC Sbjct: 351 TVVGGQLKMILEDNPNDTKVIIEKILNSKKAREAAQRARELVLRKSALEVGSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAKQ R+R +QA+LPLRGKILNV AG K N ++ + Sbjct: 411 SSKNPEECEIYIVEGDSAGGSAKQGRDRYHQAILPLRGKILNVEKAGLHKALENNEVRAM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+I+MTDADVDGAHI +LLLTF Y+ M +LI ++F+ Sbjct: 471 ITAFGTGIGDNFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVFIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I+ G + YA+ + ++I E F+ K K + R+KGLGEM QL ET MD Sbjct: 531 PPLYKISYGKQIKYAYSDRELKEITEAFEGEDK-KYTLQRYKGLGEMNPEQLWETTMDPQ 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ + +KLMG K D R +FI+E A ++ ++ Sbjct: 590 NRTLLKVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAEYVKNLD 634 >gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1] gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1] Length = 640 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 261/646 (40%), Positives = 379/646 (58%), Gaps = 21/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+ I V ++ Sbjct: 11 YDESQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGFCTEINVIVEE 70 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV+DNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 71 DNSITVIDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 129 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+EL V V R I QK+ RG+P S L+ + ++ GT I F+PDP+IF + +D Sbjct: 130 ALSEELEVYVHRDGNIHYQKYKRGVPCSDLQVVGET-DRTGTTIHFKPDPEIFTETTEYD 188 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ ++ + + E+Y+ GG+ +Y++ + + Sbjct: 189 YDTLAHRLRELAFLNKGIRITLEDRRG------ENRRNEYYYEGGISSYVKHLNRTKETL 242 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E + EK G VE A+ + + I S+ N I T EGGTHE G + ALTR I Sbjct: 243 HEEPIYIEGEKDGIQ---VEIALQYNDGYTSNIYSFANNIHTHEGGTHELGFKTALTRII 299 Query: 343 KKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 Y + ++ +D+ I+SV P+F GQTKTKL + DA+ E+ Sbjct: 300 NDYGRKNNMFKDQDANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATESIF 359 Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + F+ +L++NP A K++E ++ +R + RK A+ LPGKLADCS Sbjct: 360 AEQFEKFLLENPSVAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCSSR 419 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV + +KI +N ++ ++ A Sbjct: 420 DPAICELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAIITA 479 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + RY K+IIMTDADVDGAHI +LLLTFFY+ M ++IEQ ++++ PPL Sbjct: 480 LGTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQPPL 539 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 ++I QG + YA+ + ++IL + K I R+KGLGEM QL ET M+ RT Sbjct: 540 YKIQQGKRIEYAYSDRQLEEILTRLPEQ--PKPVIQRYKGLGEMNPEQLWETTMNPETRT 597 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + + + ++ LMG K + R +FI+E A ++ ++ Sbjct: 598 LLKVSLQDAM----EADETFEILMGDKVEPRRQFIEENAKYVKNLD 639 >gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4] gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4] Length = 646 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 258/656 (39%), Positives = 392/656 (59%), Gaps = 21/656 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 S +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 7 TNEQHSEQQSYDESQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEAMAGH 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I+V+++ + +TV DNGRGIPV H K + +E+I+T LHAGGKF Y++SGG Sbjct: 67 CDTIQVTIEEDNSITVEDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGG 125 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS +L V V R+N ++ Q++ RG+P + L + RGT I F+PDP Sbjct: 126 LHGVGASVVNALSTKLEVEVHRENQVYYQEYHRGVPAADLAVIGETEK-RGTIIRFKPDP 184 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + ++ L + A+L+ + + +E + +++ GG+ +++ Sbjct: 185 EIFTETTEYEYDILATRLRELAFLNKGLTITITDKRE------ENKSSTYFYEGGIASFV 238 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++ ++ E + EK G VE A+ + + I S+ N I T EGGTHES Sbjct: 239 EHLNRSKEVLHDEPIHIEAEKDG---LNVEVAVQYNDGYVSNIYSFANNISTHEGGTHES 295 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + LTR I YA + ++ +D+ I+SV I +P+F GQTKTKL + Sbjct: 296 GFKTGLTRVINDYARKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNS 355 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 +A+ ++ + F +++++P K++E + S R +K RE RK+A+ L Sbjct: 356 EARTVTDSLFSEAFSRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSL 415 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS A +E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI Sbjct: 416 PGKLADCSSKDATISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILA 475 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ ALG + E RY K+IIMTDADVDGAHI +L+LTFFY+ M LIE+ Sbjct: 476 NNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEK 535 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++TQG YA++++ +I+ ++ + + K+ I R+KGLGEM +QL Sbjct: 536 GYIYIAQPPLYKVTQGRDLQYAYNDKELDQIMSQYTE--RNKVGIQRYKGLGEMNPTQLW 593 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD RT+L+V + + + LMG + + R FI E A ++ ++ Sbjct: 594 ETTMDPEYRTVLQVTLEDAMK----ADEIFEILMGDRVEPRRDFIHENAQYVKNLD 645 >gi|227821835|ref|YP_002825805.1| DNA topoisomerase IV subunit B [Sinorhizobium fredii NGR234] gi|227340834|gb|ACP25052.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234] Length = 685 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 445/687 (64%), Positives = 541/687 (78%), Gaps = 8/687 (1%) Query: 3 DDSIDLFSTLP--PQSQGSSEKLKKSGEIPDSPAFANQ-SASDNYDASSIRILEGLEPVR 59 DDS DLFS +P P+ + K D+P + S +YDAS+I +LEGLEPVR Sbjct: 2 DDSSDLFSAMPLQPKPADAPRKPTAPAAGSDAPRPTPKGSDGSDYDASAIEVLEGLEPVR 61 Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV LD GFLTV DNGRGIPVE Sbjct: 62 RRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVYLDAEGFLTVTDNGRGIPVE 121 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 NHPKFPNKSTLE+++T LHAGGKFD YE SGGLHGVG+SVVNALSD + V VAR + Sbjct: 122 NHPKFPNKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDSVEVEVARNRKL 181 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + Q+FSRGIP LE+ +V N+RGT++ F PDP+IFG A F+ ARL +M +SKAYL G Sbjct: 182 YRQRFSRGIPQGGLEELGEVHNRRGTKVRFHPDPQIFGPHARFEPARLFRMARSKAYLFG 241 Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 V+ WSCD + E PEK F+FPGGLK YL L ++ EIF GK+EK G H Sbjct: 242 GVEIRWSCDPSLLPEGSETPEKAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSGGH 301 Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358 G++EWA+ W + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA + Sbjct: 302 -GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAIVT 360 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 +DD+MISA G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL NP EA KL Sbjct: 361 TDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLADNPGEAAKL 420 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 L+WVIER+EER+RRRK++EVNRKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA Sbjct: 421 LDWVIERAEERVRRRKEKEVNRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGGSA 480 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC TRS+YREEDLRYE+V Sbjct: 481 KQARNRANQAILPLRGKILNVASAGREKLGANQQITDLVQALGCGTRSKYREEDLRYERV 540 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++QG+++ YA D+ H++ Sbjct: 541 IIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLAVPPLYRLSQGSRTFYARDDAHRE 600 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +++ + +G+GK+EI RFKGLGEML +QLKET MD RTLL+VEI+ + T+++ Sbjct: 601 ELM-RTEFNGRGKVEIGRFKGLGEMLPAQLKETTMDPANRTLLKVEIDDV--DFEGTREA 657 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++ LMGTKAD RF+FIQERA F++++ Sbjct: 658 VDNLMGTKADARFRFIQERAVFVENLD 684 >gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824] gi|18273027|sp|P94604|GYRB_CLOAB RecName: Full=DNA gyrase subunit B gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum ATCC 824] gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018] Length = 637 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 258/652 (39%), Positives = 385/652 (59%), Gaps = 21/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + I Sbjct: 2 SEKNEIYDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TV D+GRG+P+ H K K T+E+I+T LHAGGKF Y +SGGLHGV Sbjct: 62 KVFIHKDNSVTVSDDGRGMPIGIHHKM-KKPTVEVIMTILHAGGKFGGGAYRVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V + I+ Q + RG SP EK ++ GT+I F+PDP+IF Sbjct: 121 GASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGD-SDEHGTKIYFKPDPEIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D +D L + + A+L+ +K + ++ + E F++ GGLK+++ Sbjct: 180 DT-EYDYDTLSQRLRELAFLNKGIKIELTDERH-------DKNEIFHYEGGLKSFVSYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + + +VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 RNKEVVFKEPIYVEGSIDSNY--SVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKT 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 ALTRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRG 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V++ + + YL +NP +++ + S R +K RE+ R+ + + LPGKL Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A E++IVEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI N+++I Sbjct: 410 ADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEI 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + A G + LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI + H+F Sbjct: 470 KAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVF 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++T+ K YA+ ++ + +L++ K +I R+KGLGEM QL ET M Sbjct: 530 IAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNT-DIQRYKGLGEMNPEQLWETTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +RTL++V I + + LMG K D R KFI+E A+ + ++ Sbjct: 589 NPEQRTLIKVNIEDAM----AADEIFTILMGDKVDPRRKFIEENATKVVNLD 636 >gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 633 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 379/649 (58%), Gaps = 23/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y+AS I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+ IEV+ Sbjct: 3 EREYNASDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVFEIVDNSIDEAVAGFCKKIEVT 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV D+GRGIPV+ HP L++ILTTLH+GGKF S Y ISGGLHGVG+S Sbjct: 63 INQDNSITVCDDGRGIPVDIHPAM-GIPALQVILTTLHSGGKFGGSGYNISGGLHGVGLS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R I+ Q + RG P++ + + + GT I F D +IF + Sbjct: 122 VVNALSRRMEVRVKRDGHIYQQDYERGNPVNEIRIIGESKE-TGTSICFFADDEIFEEIN 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ LL+ + ++L+ +K ++E +EF++ GLK ++ +N+ Sbjct: 181 -FEREILLQRLRELSFLNRNLKISLRDEREE-----EVFYQEFHYSHGLKDFVAYINKNK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339 +I+ + +K V+ AI + E + N I T EGGTHE G + ALT Sbjct: 235 EVINDNPIYFENKKDDVI---VQVAIQYNNSYSENLYSFANNIRTQEGGTHEIGFKNALT 291 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + ++ +D+ I+SV +++P+F GQTKTKL + + VE Sbjct: 292 RVINDYAKKNNILKENDNNLSGEDIREGIAAIISVLVKDPQFEGQTKTKLGNTYIRGIVE 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + + YL +NP A KLL+ I R +K RE RK A+ LPGKLADC Sbjct: 352 SIVFEHVEDYLNENPAAARKLLDKAISARRAREAAKKARELTRRKNALESTALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A +++ ++++I +L Sbjct: 412 SNKNPAESELFIVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNL 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + + RY K+ IMTDADVDG+HI LLLTFFY+ M +LIE+ +L++ Sbjct: 472 ITAMGTGIGEDFDIKKARYHKLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+ + +G + Y +++ L + ++ K I R+KGLGEM QL T MDA Sbjct: 532 PPLYGLKRGKEIKYFYNDADLNAFLSQTEQ----KWSIQRYKGLGEMDPEQLWTTTMDAE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V I + D + LMG R +FI+ A ++ ++ Sbjct: 588 SRTVLKVTIEDAIK----ANDIFSALMGDNVQPRREFIESNARYVANLD 632 >gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13] Length = 636 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 261/649 (40%), Positives = 387/649 (59%), Gaps = 20/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S+I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I V Sbjct: 3 ENSYDESNIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCSEINVI 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV DNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 63 VEKDNSITVKDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL + V R I Q+F++G+P L+ + + GT I F PD +IF + Sbjct: 122 VVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKIIGET-DVTGTIIHFVPDEEIFTETK 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ ++ +E P+K E+++ GG+ +Y++ + Sbjct: 181 EYDYDTLAHRLRELAFLNKGIRITIEDKREE-----TPKKNEYHYEGGIASYVEHLNRTK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339 +I E+ + EK G ++E A+ + + + N I T EGGTHESG + ALT Sbjct: 236 EVIHEEVVFVEGEKDGI---SIEVALQYNDSYTSNLYSFANNISTYEGGTHESGFKTALT 292 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ + Sbjct: 293 RVINDYARKNNIFKDADSNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTD 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + S R+ +K RE RK+A+ LPGKLADC Sbjct: 353 SVFTEKFEGFLLENPSAARKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N ++ + Sbjct: 413 SSKDPSISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAI 472 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + RY K++IMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 473 ITALGTGIGEDFDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 532 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I QG K YA+++ ++IL K I R+KGLGEM QL ET MD Sbjct: 533 PPLYKIQQGKKIEYAYNDRQLEEILATMSDQPKAG--IQRYKGLGEMNPEQLWETTMDPV 590 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + ++ LMG K + R FIQ+ A ++ ++ Sbjct: 591 SRTLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQDNARYVKNLD 635 >gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574] gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574] Length = 636 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 268/648 (41%), Positives = 394/648 (60%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ N I V + Sbjct: 6 NKYSADQIQVLEGLEAVRRRPGMYIGSTSSRGLHHLVYEVVDNSIDEALAGFCNRISVVI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ HPK K +E++LT LHAGGKF Y++SGGLHGVG+SV Sbjct: 66 HKDNSVTVEDNGRGIPVDLHPKV-GKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS++L V + R I+ Q +SRG+P+S L+ K ++ GT++TF+PDP+IF + Sbjct: 125 VNALSEKLEVEIKRNGNIYHQAYSRGVPVSELKIIGKSKS-TGTKVTFKPDPEIFEETT- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L++ + AYL+ VK +++ P ++ F F GG++ +++ N+ Sbjct: 183 FSLETLVQRLRELAYLNKGVKITIKDERKD-----PPVEQTFQFDGGIRDFVKHLNRNKQ 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ S+ EK+ + VE A+ + + I S+ N I T +GGTHE G + ALTR Sbjct: 238 VLHSKPIYVTGEKE---QIIVEIALQYNDTYNENILSFANNIHTVDGGTHEIGFKTALTR 294 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + Y + ++ +D+ A ++SV +REP+F GQTKTKL + + + V++ Sbjct: 295 VVNDYGRNHNLLKNSDPNLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 D YL +NP +++E I + R RK RE RK+A+ + LPGKLADCS Sbjct: 355 IFADGLATYLEENPTVGKRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N++I ++ Sbjct: 415 EKDPSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMI 474 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALGC + RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE ++++ P Sbjct: 475 TALGCGIGQDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFR+ +G Y + + +++L+ + I R+KGLGEM QL ET MD + Sbjct: 535 PLFRVRKGKLDSYVYSDHELEELLKRVGYDN---VNIQRYKGLGEMNPEQLWETTMDPDT 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + + + LMG + + R FIQE A ++ ++ Sbjct: 592 RTVLQVTLEDAI----EADATFSMLMGDRVEPRRDFIQENAQYVRNLD 635 >gi|269791748|ref|YP_003316652.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 636 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 253/648 (39%), Positives = 372/648 (57%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I++LEGL VR RPGMYIG ++ LHHL EV+DNA+DE +AG+ + ++V++ Sbjct: 6 SQYTAKDIQVLEGLSAVRKRPGMYIGDQGQRGLHHLVYEVVDNAIDEAMAGFCDTVQVTV 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V DNGRGIP E HP + E++LT LHAG KFD Y++SGGLHGVG+SV Sbjct: 66 HPDGSVSVEDNGRGIPTEMHPTM-GRPAAEVVLTVLHAGAKFDKKAYQVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L VT+ R Q + RG+P++ L + ++RGT++ F PD +IF Sbjct: 125 VNALSEWLEVTIWRNGKEHRQSYRRGVPVTDL-IAGEDTDRRGTKVHFMPDGEIFSTL-E 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F A L+ + A+L+ V + + P + + +F GG++++++ + Sbjct: 183 FSADTLIGRLRELAFLNPGVTIVFRDLR-----QDPPMERKLHFEGGIRSFVEYLNRGKE 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ S K EK G VE A+ + + I ++ N I T EGGTH SG R ALTR Sbjct: 238 VLFSPPMVVKGEKDGVI---VEVALQYNDTYLERIFAFANLINTVEGGTHVSGFRTALTR 294 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I A + + + DDL ++SV + EP+F GQTKTKL + D + V++ Sbjct: 295 LINDQARKEKLLKDKDPNFTGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + L P ++E ++ + R +K R+ V RK+A+ + LPGKLADCS Sbjct: 355 VVYEGLKVILEDQPQILRPVVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 EL+IVEGDSAGGSAK R+RS QA+LPLRGKILNV A +KI +N Q+ ++ Sbjct: 415 NRRPEECELYIVEGDSAGGSAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTII 474 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 QALGC ++ LRY K+ +M DADVDGAHI +LLLT F++ M +IE HL++ P Sbjct: 475 QALGCGVGDEFDYSKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+ +G Y + + ++I++ K + R+KGLGEM QL ET MD Sbjct: 535 PLYRVQEGKNVHYCYSDRELKEIMQRL---SGRKASVQRYKGLGEMNPEQLWETTMDPAN 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + RVEI + + + LMG + R +FI+ A + ++ Sbjct: 592 RVIKRVEIEDAV----LADELFSVLMGDAVEPRREFIEAHAKEVRNLD 635 >gi|228474124|ref|ZP_04058865.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624] gi|228274638|gb|EEK13479.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624] Length = 656 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 264/667 (39%), Positives = 386/667 (57%), Gaps = 26/667 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Q + Y A +I+ LEG+E VR+RP MYIG + LHHL EV+DN++DE +AGY Sbjct: 1 MSEQLDPNKYSADNIQSLEGMEHVRVRPSMYIGDVGVRGLHHLVYEVLDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ + +TV DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTISVVINPDNSVTVEDNGRGIPVDIHKK-EGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVV+ALS L TV R I+ Q++ RGI L +++K K RGT++TF PD + Sbjct: 120 HGVGVSVVDALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTEK-RGTKVTFLPDTE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F+ L + A+L+ + + + EK P + FY GL+ ++Q Sbjct: 179 IFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKG-APISQTFYSEKGLEEFIQ 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR+ I +I + EK VE A+ + + E Y N I T EGGTH G Sbjct: 238 YLDGNRTPIIKKIIAMEGEKNEIP---VEVAMIYNDSFNENLHSYVNNINTHEGGTHLQG 294 Query: 334 LRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 R+ LTR +K YA+ + K + I DD I+SV + EP+F GQTKT Sbjct: 295 FRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKT 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + + V A+ D + YL +NP +A ++ VI ++ RL +K RE ++ + + Sbjct: 355 KLGNREVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPM 414 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LP KLADC ELF+VEGDSAGG+AKQ R++ QA+LPLRGKILNV A Sbjct: 415 GGAGLPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQ 474 Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 ++ N++I ++ ALG ++ LRY K+IIM+DADVDG+HIA+L+LTFF Sbjct: 475 HRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDGSHIATLILTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 ++ M +LIE+ H+++ +PPL+ + QG K YA +E + I +EF + + K+ + R+KG Sbjct: 535 FRYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAITKEFYEQAQTKVAVQRYKG 594 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A QL +T MD RTL +V I + + + LMG R +FI++ A Sbjct: 595 LGEMNAEQLADTTMDPRHRTLRKVTIENAV----EADRIFSMLMGDDVPPRREFIEKNAK 650 Query: 680 FIDDVGT 686 + ++ Sbjct: 651 YA-NIDA 656 >gi|254711140|ref|ZP_05172951.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94] gi|256029521|ref|ZP_05443135.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1] gi|261318731|ref|ZP_05957928.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94] gi|265986529|ref|ZP_06099086.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1] gi|261297954|gb|EEY01451.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94] gi|264658726|gb|EEZ28987.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1] Length = 699 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 427/701 (60%), Positives = 534/701 (76%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L + ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKKHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|313902779|ref|ZP_07836176.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965] gi|313466899|gb|EFR62416.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965] Length = 635 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 265/648 (40%), Positives = 371/648 (57%), Gaps = 25/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T + LHHL EV+DNA+DE +AG I V+L Sbjct: 6 YDESQIQVLEGLEAVRRRPGMYIGSTGPRGLHHLIWEVVDNAVDEALAGRCTAITVTLHA 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +V DNG GIPV HPK K T+E++LT LHAGGKFD Y++SGGLHGVG+SVVN Sbjct: 66 DGSCSVRDNGGGIPVGIHPKV-GKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222 ALS+ L V V R+ I Q++ RG P + LE + GT + F+PDP+IF + F Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGQPETGLEVVGTTAADDTGTYVRFKPDPEIFEET-EF 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ++ + A L+ + ++ E+ F F GGL++++ + Sbjct: 184 KYDVVVGRLREIALLNSGLYIELRDER-------TGERNLFQFMGGLRSFVALLNRTKEA 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E + K E+ G VE A+ W + S+ NTI T EGGTHE+G ++ALTR Sbjct: 237 LHPEPISYKAERDGV---EVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRV 293 Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + ++ DD+ +LSV + EP+F GQTKTKL + + + V++ Sbjct: 294 VNDYARKANLLKNGDENLAGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSV 353 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + Y +NP A +++E I R RK RE RK+A+ LPGKL DC+ Sbjct: 354 TGEALATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTV 413 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELFIVEGDSAGGSAKQ R+R QAVLPLRGKILNV A +KI + +I L+ Sbjct: 414 RDPAMAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALIT 473 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G ++ RY K+I+MTDADVDGAHI +LLLTFF++ M LIE ++++ PP Sbjct: 474 AIGTGIGDEFDIHRARYHKIILMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPP 533 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+ + QG + Y +D++ + + K RFKGLGEM A QL ET M+ R Sbjct: 534 LYLVRQGKEEHYFYDDDQLEAFFRQVGKRMPA----QRFKGLGEMNAEQLWETTMNPETR 589 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 TLL+V + + + LMG++ + R +FI++ A + + T Sbjct: 590 TLLQVTLEDAM----AADQIFSILMGSRVEPRREFIEQHARKVRFLDT 633 >gi|269925173|ref|YP_003321796.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798] gi|269788833|gb|ACZ40974.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798] Length = 640 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 260/653 (39%), Positives = 389/653 (59%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + NY+A SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + Sbjct: 5 EEKVISNYNAESIQVLEGLEAVRKRPGMYIGSTDVRGLHHLIYEIVDNSVDESMAGYCDF 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TV DNGRGIPV HPK KS LE+++T LHAGGKF + Y++SGGLHG Sbjct: 65 IEVHIHKDKSVTVRDNGRGIPVGIHPKL-KKSALEVVMTVLHAGGKFGSGGYKVSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V R+ I+ Q + RG+P +P+E ++ GT ITF+PD +F Sbjct: 124 VGASVVNALSEYLIAEVHREGKIWRQSYERGVPKTPVEAIGDT-DRTGTIITFKPDADLF 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + L + + AYL+ +K + D++ E YF GG+ ++++ Sbjct: 183 STL-EYQFDTLAQRFREIAYLNKGLKITFIDDRDDKELT-------LYFEGGIASFVRHL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335 +NR++++ + + G VE AI + + N + ++ N I T +GGTH +G R Sbjct: 235 NKNRNVLTEKPIYIHKQLNGI---DVEVAIQYTDGFNESLHTFTNNINTVDGGTHLTGFR 291 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + +D+ ++SV + +P+F GQTK+KL S +A+ Sbjct: 292 TALTRTLNDYAVKNGLLKDSDTKLTGEDVREGLTAVVSVKLPDPQFEGQTKSKLGSSEAE 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 R V + +RD Y +NP +A +++ + + R+ + V RK A+ + LPGK Sbjct: 352 RVVASVVRDGLLSYFDENPSDAKRIIEKAITAARAREAARKARDLVVRKGALDGMTLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS+ +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ ++ + Sbjct: 412 LADCSERDPRHSELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKMLSSAE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ ALG + LRY ++ +MTDADVDGAHI +LLLTFF++ M D+I+ HL Sbjct: 472 IKALITALGTGIGDSFDISKLRYHRIFLMTDADVDGAHIRTLLLTFFFRHMPDIIKNGHL 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I G + + + +E + ++L + + K I R+KGLGEM QL ET Sbjct: 532 YIAMPPLYKIQVGKEKYFVYSDEERDRVLAGLNGN-RSKAIIQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + RT+++V I + + + LMG+ R KFIQ A + ++ Sbjct: 591 MDPSTRTIMQVTIEDAVK----ADELFDMLMGSNVAPRKKFIQSHAKSVRNLD 639 >gi|110633369|ref|YP_673577.1| DNA topoisomerase IV subunit B [Mesorhizobium sp. BNC1] gi|110284353|gb|ABG62412.1| DNA topoisomerase IV subunit B [Chelativorans sp. BNC1] Length = 683 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 416/686 (60%), Positives = 519/686 (75%), Gaps = 8/686 (1%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDS--PAFANQSASDNYDASSIRILEGLEPVRM 60 DD+ DLF+TL S ++ + + + ASD+Y A+ I +LEGLEPVR Sbjct: 2 DDTNDLFATLGSSSAERVKQPEPIATARKAQRAPSPARDASDSYSAADIEVLEGLEPVRR 61 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTD+KALHHLF+EVIDN+MDE +AG+A I+V L +GFLTV DNGRGIPV+ Sbjct: 62 RPGMYIGGTDDKALHHLFAEVIDNSMDEAVAGHATFIDVELSEDGFLTVTDNGRGIPVDP 121 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKF +KS LE+I+TTLH+GGKFD+ YE SGGLHGVG+SVVNALS+ L V VAR +F Sbjct: 122 HPKFKDKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSELLEVEVARGRQLF 181 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q+FSRG PL PLE +V N+RGTR F+PDP+IFG A F+ ARL +MT+SKAYL G Sbjct: 182 RQRFSRGKPLGPLESVGEVHNRRGTRTRFKPDPEIFGAGAKFEPARLYRMTRSKAYLFGG 241 Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W+C + EK P+K F+FPGGLK YL ++ ++ E+F GKTEK+ H Sbjct: 242 VEIRWNCAPSLLKEKDETPDKAVFHFPGGLKDYLSNSIDGEFQVTREVFAGKTEKQSGH- 300 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 G VEWA+ W + + SYCNTI T EGGTHE G R AL RG++ YA+LT NKRA + + Sbjct: 301 GAVEWAVTWYGGDAFLNSYCNTIPTPEGGTHEQGFRNALLRGLRGYADLTGNKRASIVTA 360 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+MISA G+LSVF+REPEF GQTK KL + A R VENA+RDPFDH+L NP EA+KLL Sbjct: 361 EDVMISAAGMLSVFVREPEFVGQTKDKLATAAAMRIVENAVRDPFDHWLADNPAEASKLL 420 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 +WVI R++ERL+RR+++EV+RK+A+RKLRLPGKLADC+ A G E+FIVEGDSAGGSAK Sbjct: 421 DWVIARADERLKRRQEKEVSRKSAVRKLRLPGKLADCTVGAAAGAEIFIVEGDSAGGSAK 480 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR+ QAVLPLRGKILNVASAGS K+ NQQI DL+QALGC TRS+YREEDLRYE+VI Sbjct: 481 QARNRATQAVLPLRGKILNVASAGSGKLAANQQITDLIQALGCGTRSKYREEDLRYERVI 540 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFYQEM LI HLFL PPL+RI+QG K++YA D+ HK + Sbjct: 541 IMTDADVDGAHIASLLITFFYQEMPQLITGGHLFLAVPPLYRISQGGKTMYARDDAHKDE 600 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+GK+EI RFKGLGEM+ +QLKET MD RTLLRVE+ + T ++ Sbjct: 601 LLKT-EFTGRGKVEIGRFKGLGEMMPAQLKETTMDPKYRTLLRVEVLDTPEA---TSSAV 656 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMGTK + RF+FIQE A F++++ Sbjct: 657 DALMGTKPEARFRFIQENAEFVEELD 682 >gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8] Length = 636 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL EV+DN++DE +AGY + I V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++P+E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPMEVIGET-DKHGTIVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GG+ Y++ + Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I +TEK G VE A + + +I S+ NTI T +GGTH + + Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y + K+ S +D+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 V A+R+ NP +L ++ + R ++ RE+ RK ++ LPGKLA Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +++ N+QI Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + E LRY ++IIMTDAD+DGAHI +LLLT FY+ M LIEQ +++ Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + ++ + E+ + +IEI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|23500335|ref|NP_699775.1| DNA topoisomerase IV subunit B [Brucella suis 1330] gi|23463950|gb|AAN33780.1| DNA topoisomerase IV, B subunit [Brucella suis 1330] Length = 699 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDKHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8] gi|6831559|sp|P77993|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II subunit B gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8] Length = 636 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 380/651 (58%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL EV+DN++DE +AGY + I V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++P+E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GG+ Y++ + Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I +TEK G VE A + + +I S+ NTI T +GGTH + + Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y + K+ S +D+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 V A+R+ NP +L ++ + R ++ RE+ RK ++ LPGKLA Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +++ N+QI Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + E LRY ++IIMTDAD+DGAHI +LLLT FY+ M LIEQ +++ Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + ++ + E+ + +IEI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885] gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885] Length = 635 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 264/648 (40%), Positives = 369/648 (56%), Gaps = 25/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T + LHHL EV+DNA+DE +AG I V+L Sbjct: 6 YDESQIQVLEGLEAVRRRPGMYIGSTGPRGLHHLIWEVVDNAVDEALAGRCTAITVTLHA 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +V DNG GIPV HPK K T+E++LT LHAGGKFD Y++SGGLHGVG+SVVN Sbjct: 66 DGSCSVRDNGGGIPVGIHPKV-GKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAGF 222 ALS+ L V V R+ I Q++ RG P + LE GT + F+PDP+IF + F Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGKPDTDLEVVGTTDPADTGTYVRFKPDPEIFEET-EF 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ++ + A L+ + ++ E+ F F GGL++++ + Sbjct: 184 KYDVVVGRLREIALLNSGLYIELKDER-------TGERNLFQFMGGLRSFVALLNRTKEP 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E + K E+ G VE A+ W + S+ NTI T EGGTHE+G ++ALTR Sbjct: 237 LHPEPISYKGERDGV---EVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRV 293 Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + ++ DD+ +LSV + EP+F GQTKTKL + + + V++ Sbjct: 294 VNDYARKANLIKNGEENLSGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSV 353 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + Y +NP A +++E I R RK RE RK+A+ LPGKL DC+ Sbjct: 354 TGEALATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTV 413 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELFIVEGDSAGGSAKQ R+R QAVLPLRGKILNV A +KI + +I L+ Sbjct: 414 RDPAMAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALIT 473 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + + RY K+I+MTDADVDGAHI +LLLTFF++ M LIE ++++ PP Sbjct: 474 AIGTGIGEDFDIQKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPP 533 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+ + G + Y +D++ + + K RFKGLGEM A QL ET M+ R Sbjct: 534 LYLVRMGKEEHYFYDDDQLEAFFRQIGKRMPA----QRFKGLGEMNAEQLWETTMNPETR 589 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 TLL+V + + + LMG++ + R +FI++ A + + T Sbjct: 590 TLLQVTLEDAM----AADQIFSILMGSRVEPRREFIEQHARKVRFLDT 633 >gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 641 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 260/648 (40%), Positives = 377/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ I+V ++ Sbjct: 7 EYGADQIQILEGLEAVRKRPGMYIGSTSGRGLHHLVYEIVDNAVDEALAGFCTEIQVVIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 67 PDNSITVVDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L V + + I+ Q++ RG + PL+ +K GT + F PD +IF + Sbjct: 126 NALSTWLEVRIYHEGKIYQQRYERGKTMYPLKVVGDCQPDKTGTTVVFLPDKEIFEETV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L+ +K +E E+ + F++ GG++ ++ ++ Sbjct: 185 YDYDILKQRLREMAFLTKGLKISLKDTREGMEREKV-----FHYEGGIREFVSYLNRSKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + ++ G +VE A+ + + N I T EGGTH G R ALT+ Sbjct: 240 ALYPEIIYCEGQQNGV---SVEVAMQHNDSYTENCYGFVNNINTPEGGTHIVGFRNALTK 296 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ DD+ I+SV I P+F GQTK KL + +A+ V++ Sbjct: 297 TFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDS 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 357 VVSKQLEIFLEQNPTVAKTTVEKSVLAQRAREAARKARDLTRRKSALDNMSLPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK ARNR QA+LPLRGKILNV A +KI N +I ++ Sbjct: 417 DKNPENCEIYIVEGDSAGGSAKTARNRVTQAILPLRGKILNVEKARLDKIYANAEIKAMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q +++L P Sbjct: 477 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+D++ +IL E + G K I R+KGLGEM A QL ET MD K Sbjct: 537 PLYKVEKNKKVWYAYDDDELNQILTEIGRDGNNK--IQRYKGLGEMDADQLWETTMDPEK 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V +++ + + + LMG K + R +FI+E A F+ ++ Sbjct: 595 RILLKVTMDEA--ATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLD 640 >gi|125974861|ref|YP_001038771.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405] gi|256003883|ref|ZP_05428870.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360] gi|281418684|ref|ZP_06249703.1| DNA gyrase, B subunit [Clostridium thermocellum JW20] gi|125715086|gb|ABN53578.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405] gi|255992221|gb|EEU02316.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360] gi|281407768|gb|EFB38027.1| DNA gyrase, B subunit [Clostridium thermocellum JW20] gi|316939072|gb|ADU73106.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 1313] Length = 641 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 263/647 (40%), Positives = 381/647 (58%), Gaps = 22/647 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S+I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ N I+V + Sbjct: 11 YDESNIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIMDNSIDEALAGFCNEIKVIIHK 70 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +T +DNGRGIPV HPK ST+E++ T LHAGGKFD Y++SGGLHGVG SVVN Sbjct: 71 DNSITNIDNGRGIPVGIHPKL-GISTVEVVHTILHAGGKFDGQGYKVSGGLHGVGASVVN 129 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V V R I+ Q++ RG P++P+E N GT+ TF+PDP+IF FD Sbjct: 130 ALSEFLEVEVFRDGHIYRQRYERGKPVTPVEIIGDT-NLTGTKTTFKPDPEIFEVT-EFD 187 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 LL + A+L+ +K ++ P ++ ++ GG+ ++++ N+ + Sbjct: 188 FEVLLTRLRELAFLNKGLKIILRDER-----PEEPVEKHLHYEGGIVSFVEYMDRNKDPL 242 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I K G VE A+ + + I S+ N I T EGGTH +G + A+T+ Sbjct: 243 HEPI-YFDGYKDG---CYVEIAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKV 298 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA+ + +++ +D+ ++SV I +P+F GQTKTKL + + + VE+ Sbjct: 299 LNDYAKKFNFLKENDKNLLGEDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRSFVESI 358 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + F +L +NP +L+ I + R RK RE RK + LPGKLADC++ Sbjct: 359 INEKFASFLEENPSVTRLILDKCIMSARAREAARKARELTRRKNVLETSTLPGKLADCTE 418 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAKQ RNR QA+LPL GK+LNV A +K+ N ++ ++ Sbjct: 419 RDPSLCEIFIVEGDSAGGSAKQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPVIM 478 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + LRY K+IIM DADVDGAHI +LLLTFFY+ M LI ++++ PP Sbjct: 479 ALGTNIGQDFDITKLRYHKIIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQPP 538 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++IT+G +YA+++ +KI+ E + K + I RFKGLGEM QL T MD R Sbjct: 539 LYKITKGKTELYAYNDSELEKIIRE-NQWKKEECTIQRFKGLGEMNPEQLWTTTMDPETR 597 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+LRVE+ + + LMG K + R +FIQ A + ++ Sbjct: 598 TILRVELEDAI----AADEIFTILMGDKVEPRKEFIQANAKLVTNLD 640 >gi|295106380|emb|CBL03923.1| DNA gyrase subunit B [Gordonibacter pamelaeae 7-10-1-b] Length = 656 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 258/664 (38%), Positives = 380/664 (57%), Gaps = 22/664 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + D+YD S I++LEGLE VR RPGMYIG T + LHHL EV+DNA+DE +AGY Sbjct: 1 MSVANKPDHYDGSDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV + + +TV DNGRGIPV+ HPK T+E++LT LHAGGKF Y++SGGL Sbjct: 61 DTIEVWIHPDNSITVDDNGRGIPVDKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS + V+V ++ + F G L + KVR GT +TF PDP Sbjct: 120 HGVGVSVVNALSSRVEVSVFKEGVQYDISFDHGKTAEKLREVGKVRRGNGTTVTFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-----AEKYGIPEKEEFYFPGGL 269 IF D +D L + A+L+ +K ++ ++ P E F + GG+ Sbjct: 180 IFTDTTVYDYDTLASRFREMAFLNKGLKIILHDERVNPGSTLSDLAPEPRTEVFQYAGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 +++ E + ++ I+ GT ++W+ ++ + ++ N I T EGGT Sbjct: 240 VDFVKFLNEGKETLNKPIYFEAENDDGTVEVAMQWSSSYSTN--SVMAFANNINTHEGGT 297 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H G + A+TR I +YA ++ ++ DD I+SV + +P+F GQTKTKL Sbjct: 298 HLDGFKQAVTRTINEYARAKGILKEKDSNLSGDDTREGCAAIISVKLHDPQFEGQTKTKL 357 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + + V+NA+ YL +NP A ++++ + + R RK RE+ R+ + Sbjct: 358 GNTEIRPLVQNAVTQGLAEYLEENPKPAKRIIDKATQALKAREAARKAREMTRRKGVLDS 417 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E+FIVEGDSAGGSAKQAR+R QA+LPLRGKILNV AG + Sbjct: 418 FALPGKLADCSSKTPADSEIFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHR 477 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++ I L+ A+G + + RY ++IIMTDADVDGAHI LLLTFFY+ M +L Sbjct: 478 SLSSDTISSLITAIGTNIGDDFDADQARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPEL 537 Query: 567 IEQKHLFLISPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 I + ++++ PP+F + + Y +DE +L E+ K ++ R+KGLG Sbjct: 538 INRGYIYIAQPPIFGLKKKNSRSPKIERYIYDESALGSVLAEY--DNPDKFDVQRYKGLG 595 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM QL ET M+ RTLL+V I+ + + +++LMG + + R +FIQ+ A + Sbjct: 596 EMDPDQLWETTMEPETRTLLQVNIDD----AAEAERVVSELMGDQVEPRKEFIQKHARDV 651 Query: 682 DDVG 685 + Sbjct: 652 RFLD 655 >gi|225629085|ref|ZP_03787118.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo] gi|260167389|ref|ZP_05754200.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99] gi|261756798|ref|ZP_06000507.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99] gi|225615581|gb|EEH12630.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo] gi|261736782|gb|EEY24778.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99] Length = 699 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSASGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|17989021|ref|NP_541654.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M] gi|62317552|ref|YP_223405.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 1 str. 9-941] gi|83269533|ref|YP_418824.1| DNA topoisomerase IV subunit B [Brucella melitensis biovar Abortus 2308] gi|225686377|ref|YP_002734349.1| DNA topoisomerase IV subunit B [Brucella melitensis ATCC 23457] gi|237817100|ref|ZP_04596092.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A] gi|254691049|ref|ZP_05154303.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870] gi|254695645|ref|ZP_05157473.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya] gi|254698833|ref|ZP_05160661.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|254699828|ref|ZP_05161656.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513] gi|254705913|ref|ZP_05167741.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10] gi|254712402|ref|ZP_05174213.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1] gi|254715474|ref|ZP_05177285.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1] gi|254732280|ref|ZP_05190858.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292] gi|256015368|ref|YP_003105377.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915] gi|256043489|ref|ZP_05446416.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|256059216|ref|ZP_05449422.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33] gi|256111492|ref|ZP_05452506.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str. Ether] gi|256157716|ref|ZP_05455634.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1] gi|256253313|ref|ZP_05458849.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94] gi|256256234|ref|ZP_05461770.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68] gi|256262482|ref|ZP_05465014.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str. 63/9] gi|260544788|ref|ZP_05820609.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038] gi|260564683|ref|ZP_05835168.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M] gi|260756645|ref|ZP_05868993.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870] gi|260760075|ref|ZP_05872423.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292] gi|260763314|ref|ZP_05875646.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260882462|ref|ZP_05894076.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68] gi|261216044|ref|ZP_05930325.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya] gi|261217208|ref|ZP_05931489.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1] gi|261220428|ref|ZP_05934709.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94] gi|261313342|ref|ZP_05952539.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10] gi|261320079|ref|ZP_05959276.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1] gi|261323165|ref|ZP_05962362.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33] gi|261750301|ref|ZP_05994010.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513] gi|265989906|ref|ZP_06102463.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|265992989|ref|ZP_06105546.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str. Ether] gi|265996221|ref|ZP_06108778.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1] gi|294853612|ref|ZP_06794284.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026] gi|297249591|ref|ZP_06933292.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196] gi|17984860|gb|AAL53918.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M] gi|62197745|gb|AAX76044.1| ParE, DNA topoisomerase IV, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82939807|emb|CAJ12815.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Brucella melitensis biovar Abortus 2308] gi|225642482|gb|ACO02395.1| DNA topoisomerase IV, B subunit [Brucella melitensis ATCC 23457] gi|237787913|gb|EEP62129.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A] gi|255998028|gb|ACU49715.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915] gi|260098059|gb|EEW81933.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038] gi|260152326|gb|EEW87419.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M] gi|260670393|gb|EEX57333.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292] gi|260673735|gb|EEX60556.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260676753|gb|EEX63574.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870] gi|260871990|gb|EEX79059.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68] gi|260917651|gb|EEX84512.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya] gi|260919012|gb|EEX85665.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94] gi|260922297|gb|EEX88865.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1] gi|261292769|gb|EEX96265.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1] gi|261299145|gb|EEY02642.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33] gi|261302368|gb|EEY05865.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10] gi|261740054|gb|EEY27980.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513] gi|262550518|gb|EEZ06679.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1] gi|262763859|gb|EEZ09891.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str. Ether] gi|263000575|gb|EEZ13265.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|263092218|gb|EEZ16515.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str. 63/9] gi|294819267|gb|EFG36267.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026] gi|297173460|gb|EFH32824.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196] Length = 699 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|161620653|ref|YP_001594539.1| DNA topoisomerase IV subunit B [Brucella canis ATCC 23365] gi|254702966|ref|ZP_05164794.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686] gi|260568121|ref|ZP_05838590.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40] gi|261753574|ref|ZP_05997283.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686] gi|161337464|gb|ABX63768.1| DNA topoisomerase IV, B subunit [Brucella canis ATCC 23365] gi|260154786|gb|EEW89867.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40] gi|261743327|gb|EEY31253.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686] Length = 699 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 427/701 (60%), Positives = 533/701 (76%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQRGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|21675071|ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum TLS] gi|21648310|gb|AAM73478.1| DNA gyrase subunit B [Chlorobium tepidum TLS] Length = 647 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 270/662 (40%), Positives = 383/662 (57%), Gaps = 25/662 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ Q+AS Y A++I++L+G+E VR RP MYIG + LHHL E++DNA+DE + Sbjct: 3 ETDIQTAQNASTEYGATNIQVLDGIEHVRKRPAMYIGDIHSRGLHHLVYEIVDNAIDETL 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY + I V+++ +G +TV D+GRGIPV+ HP KS LE+++T + AGGKFD Y++ Sbjct: 63 AGYNDYIHVAMNPDGSVTVTDHGRGIPVDIHP-VKKKSALELVMTVIGAGGKFDKGAYKV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS+ V V R IF Q + RG+P +E+ ++RGT++TF+ Sbjct: 122 SGGLHGVGASVVNALSEWCEVEVYRDGKIFRQTYRRGVPQGGVEEIG-TTDQRGTKVTFK 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF F +L + A+L+ ++ +E F++ GGLK Sbjct: 181 PDPEIF-KITEFRKDIILDRMRELAFLNSNLRIIVQD--------AEGNEEIFHYEGGLK 231 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ NR + E E+ T VE A+ + + I SY N I T EGGT Sbjct: 232 EFVRFIDSNRLSLLKEPIFLSGERDSTM---VEIALQYNDSYQENIFSYVNNINTHEGGT 288 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR + YA+ + + I DD ++SV + EP+F GQTKTKL Sbjct: 289 HVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKL 348 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + Q VE + + + NP ++E V + R RK +E RK+ + Sbjct: 349 GNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKSAAISREAARKAKELTRRKSVLES 408 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K Sbjct: 409 SGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHK 468 Query: 507 IRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + N++I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M Sbjct: 469 MLENEEIKTIILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRS 528 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEM 623 LIE +F+ PPL+ + G + YA DE+ + I+E+ KK GK + I R+KGLGEM Sbjct: 529 LIEAGKVFIAQPPLYLVKSGREQQYAWDEDERLSIVEQMKKLQKGKANVSIQRYKGLGEM 588 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL T MD R+LL+V + + + + LMG K + R FI++ A ++ Sbjct: 589 NPEQLWSTTMDPAHRSLLQVTVENAM----EADQVFSTLMGDKVEPRRDFIEKNARYVRR 644 Query: 684 VG 685 + Sbjct: 645 LD 646 >gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A] gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A] Length = 635 Score = 643 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 257/652 (39%), Positives = 389/652 (59%), Gaps = 20/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ Sbjct: 2 PNNNNSHYTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I + + + V DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHG Sbjct: 62 ITIEILKGEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVN LS+ V + + TI+ QK+ RGIP L+ K +K GT I+F+ DP IF Sbjct: 121 VGASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ L Q A+L+ +K D+ + + E F++ GG+ Y++ Sbjct: 180 TETVIYNYETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 +++S I ++I E+ G TVE A+ + + + N I T EGG HE G + Sbjct: 235 NQSKSKIHNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFK 291 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +ALTR I KYA+ + K+ SI +D I+SV EP+F GQTKTKL + + + Sbjct: 292 MALTRVISKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAI 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 + + +L++NP +A ++E V+ + R+ RK ++ RK+ + L KLA Sbjct: 352 TSQITSEAIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC +E++IVEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I+ Sbjct: 412 DCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIV 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +L+QA+G ++ RY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ Sbjct: 472 NLIQAMGTGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYA 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I+ G YA++E+ ++L+ + K I R+KGLGEM A QL +T MD Sbjct: 532 AQPPLYKISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 KRTLL++++ + + + LMG + + R +FIQ A + D+ Sbjct: 588 PAKRTLLQIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 635 >gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271] gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271] Length = 645 Score = 643 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 386/651 (59%), Gaps = 23/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + +Y+A I +LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + +E Sbjct: 13 SPAADYNAGQIEVLEGLEAVRKRPGMYIGSTTSRGLHHLVYEIVDNSIDEAMAGFCDNVE 72 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV DNGRGIPV+ HPK K +E+ +T LHAGGKF Y++SGGLHGVG Sbjct: 73 VTIHNDNSITVKDNGRGIPVDIHPKM-KKPAVEVAMTILHAGGKFSGDAYKVSGGLHGVG 131 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L V V + Q++SRG PL L++ + + GT+I+F+PD +IF D Sbjct: 132 MSVVNALSEWLKVEVKINGIRYQQEYSRGKPLYDLKEAGTYKGRTGTQISFKPDAQIFED 191 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + + ++L+ + ++ E F GG+ Y++ Sbjct: 192 VI-YDYEVLEQRLKELSFLNKNIGIALKDER-------TGAGELFKHSGGIVDYVKYLNR 243 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ I + + +K+ VE A + + I SY N I T EGGTHE+G + A Sbjct: 244 NKDAIQPKPIYFEAQKE---ENIVEIAFQYNDGYSENIYSYANNINTTEGGTHEAGFKAA 300 Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + ++ +D+ I+SV +REP+F GQTKTKL + + + Sbjct: 301 LTRVINDYARKNNILKANENNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEMRSI 360 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ L D + +NP A K++E ++ + R+ RK R+ RK A+ LPGKLA Sbjct: 361 VDSILGDGLSTFCEENPSVAKKIVEKGLQATRARMAARKARDLTRRKNALDSTSLPGKLA 420 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ A E+++VEGDSAGGSAKQ R++ QA+LPLRGKILNV A ++I N++I Sbjct: 421 DCAWKEAQFCEIYLVEGDSAGGSAKQGRDQKFQAILPLRGKILNVEKARLDRILANEEIR 480 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + E RY K++IMTDADVDG+HI LLLTFFY+ M L+E ++++ Sbjct: 481 AMITAMGTGISDDFNLEKARYNKIVIMTDADVDGSHIRILLLTFFYRYMKPLLENNYVYI 540 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLF+I +G + YA+ +E ILE G+ ++EI R+KGLGEM QL ET M+ Sbjct: 541 AQPPLFQIKKGKEIQYAYSDEELNHILEMI---GRERVEIQRYKGLGEMNPEQLWETTMN 597 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V++ + ++ MG K D R ++IQ+ A + ++ Sbjct: 598 PETRTILQVKMED----ARRAEELFTIFMGDKVDPRKEYIQKYAKDVKNLD 644 >gi|326335208|ref|ZP_08201404.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692616|gb|EGD34559.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 656 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 262/667 (39%), Positives = 385/667 (57%), Gaps = 26/667 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Q D Y A +I+ LEG+E VR+RP MYIG + LHHL EV+DN++DE +AGY Sbjct: 1 MSEQLNQDKYSADNIQSLEGMEHVRVRPSMYIGDVGMRGLHHLVYEVLDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ + +TV DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTISVFINPDNSITVEDNGRGIPVDIHKK-EGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L TV R + Q++ RG+ L +++ + RGT++TF PD + Sbjct: 120 HGVGVSVVNALSTHLTATVYRDGKEWQQEYERGVALYSVKEIGETNK-RGTKVTFLPDTE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + A+L+ ++ + +E ++ P +EFY GL ++Q Sbjct: 179 IFQQSIEFSYDILASRIRELAFLNKGIRITLTDLREKDDQG-KPLSQEFYSEKGLVEFIQ 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR I S+I + + EK VE A+ + + E Y N I T EGGTH G Sbjct: 238 YLDGNRPPIISKIISMEGEKNEIP---VEVAMVYNDSFNENLHSYVNNINTHEGGTHLQG 294 Query: 334 LRVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 R+ LTR +K YA+ + K + I DD I+SV + EP+F GQTKT Sbjct: 295 FRMGLTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKT 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + + V A+ + + YL +NP +A ++ VI ++ RL +K RE ++ + + Sbjct: 355 KLGNREVTAAVSQAVSEMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPM 414 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC ELF+VEGDSAGG+AKQ R++ QA+LPLRGKILNV A Sbjct: 415 GGAGLPGKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQ 474 Query: 505 EKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 ++ ++++I ++ ALG + LRY K+IIM DADVDG+HIA+L+LTFF Sbjct: 475 HRVLDSEEIRNIYTALGVTIGTDEDSKALNMSKLRYYKIIIMCDADVDGSHIATLILTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 ++ M +LIE+ H+++ +PPL+ + QG K YA +E + I EF + K+ + R+KG Sbjct: 535 FRYMRELIEEGHIYIATPPLYLLKQGKKEQYAWSDEERDAITNEFYSQAQAKVAVQRYKG 594 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A+QL +T MD RTL +V I + + + LMG R +FI++ A Sbjct: 595 LGEMNATQLADTTMDPKHRTLRKVTIENAV----EADRIFSMLMGDDVPPRREFIEKNAR 650 Query: 680 FIDDVGT 686 + ++ Sbjct: 651 YA-NIDA 656 >gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831] gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831] Length = 641 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 260/653 (39%), Positives = 382/653 (58%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + Y A I++LEGLE VR RPGMYIG T EK LHHL E++DN++DE +AGY + Sbjct: 6 KITENQEYGADQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALAGYCDH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TV DNGRGIPV+ K + LE+I+T LHAGGKF Y++SGGLHG Sbjct: 66 IQVVVEEDNSITVKDNGRGIPVDIQQK-TGRPALEVIMTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS EL V V R + F +G+P ++ + GT FRPD +IF Sbjct: 125 VGASVVNALSSELEVYVHRDGKVHFLSFKKGVPDGEIKVIGDT-DITGTVTHFRPDTEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ L + + A+L+ +K + E + +++ GG+ +Y++ Sbjct: 184 TETTEYNFDTLEQRLRELAFLNKGLKISIEDKRTDRE------QVTYHYEGGISSYVEFI 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N+ ++ + E +G +VE AI + + + S+ N I T EGG+HE G R Sbjct: 238 NKNKEVLHEPF-FAEGEDQGI---SVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFR 293 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LTR I YA+ + ++ DD+ I+S+ +P+F GQTKTKL + + + Sbjct: 294 SGLTRIINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQFEGQTKTKLGNSEVR 353 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 + + F +L +NP A ++E + S RL +K RE RK+ + LPGK Sbjct: 354 AITDGVFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTRRKSNLEISNLPGK 413 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A +EL+IVEGDSAGGSAK R+R QA+LPLRGKILNV A ++I +N + Sbjct: 414 LADCSSRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNE 473 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIEQ ++ Sbjct: 474 VRAMITALGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGYI 533 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG YA++++ +IL E K K I R+KGLGEM A QL +T Sbjct: 534 YIAQPPLYQVKQGKTVNYAYNDKELDRILNEIPKA--PKPNIQRYKGLGEMNADQLWDTT 591 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + RTLL+VE++ + D + LMG K + R FI+E A ++ ++ Sbjct: 592 MDPDTRTLLQVELSDAI----DADQVFDMLMGDKVEPRRIFIEENAQYVKNLD 640 >gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii] gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii] gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 257/645 (39%), Positives = 386/645 (59%), Gaps = 20/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ I + + Sbjct: 5 YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + V DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN Sbjct: 65 GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 LS+ V + + TI+ QK+ RGIP L+ K +K GT I+F+ DP IF + ++ Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTETVIYN 182 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L Q A+L+ +K D+ + + E F++ GG+ Y++ +++S I Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFLNQSKSKI 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342 ++I E+ G TVE A+ + + + N I T EGG HE G ++ALTR I Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 KYA+ + K+ SI +D I+SV EP+F GQTKTKL + + + + Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 + +L++NP +A ++E V+ + R+ RK ++ RK+ + L KLADC Sbjct: 355 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +E++IVEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 ++ RY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL++ Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I+ G YA++E+ ++L+ + K I R+KGLGEM A QL +T MD KRTLL Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++++ + + + LMG + + R +FIQ A + D+ Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 631 >gi|226309593|ref|YP_002769487.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599] gi|226092541|dbj|BAH40983.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599] Length = 641 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 271/652 (41%), Positives = 387/652 (59%), Gaps = 20/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + NYDAS I++LEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I Sbjct: 5 TTKDTNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNAIDEALAGYCDEI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIP H K KST+E +LT LHAGGKF Y++SGGLHGV Sbjct: 65 LVVIHPDNSVSVTDNGRGIPTGIHEK-TGKSTVETVLTVLHAGGKFGGGGYKVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ + V V + N ++ +F G P + L + GT++TF+PDP IF Sbjct: 124 GSSVVNALSEWMEVEVKQNNQVYYMRFKVGAPDADLAVVGETEE-TGTKVTFKPDPTIFT 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F+ L K + A+L+ ++ + EK E F++ GG+ +++ Sbjct: 183 ETTVFEYEILQKRIRELAFLNKGLRITLKDTRPDHEKE-----ESFHYEGGIIQFVEYLN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +NR + ++ + EK+G VE A+ + + I S+ N I T EGGTHE+G + Sbjct: 238 KNREALHDDVIYCEGEKEG---LVVEVALQYNDTYVSNIYSFANNINTHEGGTHETGFKT 294 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I Y+ ++ ++ DD+ I+SV I+EP+F GQTKTKL + +A+ Sbjct: 295 ALTRVINDYSRKFNFLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARS 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 E+ D F+ ++ +NP A K++E + S R RK R RK+A+ LPGKL Sbjct: 355 ITESVFGDRFNTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSALPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A +ELFIVEGDSAGGSAK R+R QA+LPLRGK+LNV A +KI N +I Sbjct: 415 ADCSSKDASESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEI 474 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + RY KV+IMTDADVDG+HI +LLLTFF++ M LIE +++ Sbjct: 475 RAIITALGTGVGEDFDITKARYHKVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIY 534 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+ I QG YA++++ + ++L K K + R+KGLGEM A QL ET M Sbjct: 535 IAQPPLYSIKQGKTLHYAYNDKQRDEVLATLKAQ--PKPNVQRYKGLGEMNADQLWETTM 592 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D RTLL+V++ + D LMG + + R +FI++ A+ + D+ Sbjct: 593 DPEVRTLLQVDLEDAM----DADMVFETLMGDEVEPRREFIEQYAANVRDLD 640 >gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824] Length = 637 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 258/652 (39%), Positives = 385/652 (59%), Gaps = 21/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + I Sbjct: 2 SEKNEIYDESQIQVLEGLEAVRKRPGMYIGTTGTRGLHHLVYEIVDNSIDEALAGYCSHI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TV D+GRG+P+ H K K T+E+I+T LHAGGKF Y +SGGLHGV Sbjct: 62 KVFIHKDNSVTVSDDGRGMPIGIHHKM-KKPTVEVIMTILHAGGKFGGGAYRVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V + I+ Q + RG SP EK ++ GT+I F+PDP+IF Sbjct: 121 GASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGD-SDEHGTKIYFKPDPEIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D +D L + + A+L+ +K + ++ + E F++ GGLK+++ Sbjct: 180 DT-EYDYDTLSQRLRELAFLNKGIKIELTDERH-------DKNEIFHYEGGLKSFVSYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + + +VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 RNKEVVFKEPIYVEGSIDSNY--SVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKT 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 ALTRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRG 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V++ + + YL +NP +++ + S R +K RE+ R+ + + LPGKL Sbjct: 350 IVDSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A E++IVEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI N+++I Sbjct: 410 ADCSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEI 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + A G + LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI + H+F Sbjct: 470 KAMATAFGGGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVF 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++T+ K YA+ ++ + +L++ K +I R+KGLGEM QL ET M Sbjct: 530 IAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNT-DIQRYKGLGEMNPEQLWETTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +RTL++V I + + LMG K D R KFI+E A+ + ++ Sbjct: 589 NPEQRTLIKVNIEDAM----AADEIFTILMGDKVDPRRKFIEENATKVVNLD 636 >gi|254720422|ref|ZP_05182233.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13] gi|265985441|ref|ZP_06098176.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13] gi|264664033|gb|EEZ34294.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13] Length = 699 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 426/701 (60%), Positives = 532/701 (75%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K P K F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|148269239|ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petrophila RKU-1] gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1] Length = 636 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 261/651 (40%), Positives = 379/651 (58%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMY+G T ++ LHHL EV+DN++DE +AGY + I V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYVGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++P+E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GG+ Y++ + Sbjct: 179 FDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I +TEK G VE A + + +I S+ NTI T +GGTH + + Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y + K+ S +D+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 V A+R+ N +L ++ + R ++ RE+ RK ++ LPGKLA Sbjct: 352 VTKAMREELKKIFDANSDLVKAILSKIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +++ N+QI Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + E LRY ++IIMTDAD+DGAHI +LLLT FY+ M LIEQ +++ Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + ++ + E+ + +IEI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|258510025|ref|YP_003183459.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476751|gb|ACV57070.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 637 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 255/654 (38%), Positives = 372/654 (56%), Gaps = 21/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A++ YD S I +LEGL+ VR RPGMYIG T K LHHL E++DNA+DE +AG Sbjct: 1 MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSAKGLHHLVWEIVDNAVDEALAGRC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V + + +TV+DNG G PV HPK + +E +LTTLHAGGKF Y++SGGL Sbjct: 61 TRIVVQVHPDNSVTVIDNGAGFPVGIHPK-TGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ + V V R I+ Q++ RG PL L+ +K GT+++F+PDP+ Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F A L+ + A+L+ ++ + ++E ++ F + GG+ +++ Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFKYDGGVAEFVR 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 +++ ++ + K VE A+ + + S+ N I T EGGTHE+G Sbjct: 233 WLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYAATVYSFANNINTAEGGTHEAG 289 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + S+ DD+ ++SV + EP+F GQTKTKL + + Sbjct: 290 FKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + VE + +L +NP A K++E I + R R+ RE+ R + LPG Sbjct: 350 VRGIVETLFAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSKKMDVTSLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS +ELF+VEGDSAGGSAK R+ QA+LPLRGKI+NV A +K+ N+ Sbjct: 410 KLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANE 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A G + RY K++IMTDAD DG+HI LLLT FY+ M LI+ + Sbjct: 470 EIRAIITACGTGIGDDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL++I +G YA+ + ++IL+E + G + + R+KGLGEM A QL ET Sbjct: 530 IYIAQPPLYKIEKGKVVRYAYSDAQLEQILQEMGREG---VRLQRYKGLGEMNADQLWET 586 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLLRV + + D + LMG K + R FI E A F+ ++ Sbjct: 587 TMDPESRTLLRVTMEDAM----DADMIFSILMGDKVEPRRDFIAEHARFVRNLD 636 >gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] Length = 640 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +YD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I V Sbjct: 8 EQSYDENQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCSEINVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 68 IEKDNSITVVDDGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R + QKF RG+P + L+ + GT I F+PD +IF + Sbjct: 127 VVNALSTELEVFVRRDGKLHYQKFERGVPAADLKVIGEAEE-TGTTIHFKPDGEIFTETL 185 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K + +K E+++ GG+K+Y++ + Sbjct: 186 EYEYEILANRIRELAFLNRGLKITIEDKR------AENKKSEYFYEGGIKSYVEHLNRTK 239 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ E + EK+G TVE AI + + I SY N I T EGGTHESG + ALT Sbjct: 240 EVLHEEPIYIEGEKEGI---TVEVAIQYNDGFTGNIYSYANNIHTYEGGTHESGFKTALT 296 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ +D+ I+S+ +P+F GQTKTKL + + + + Sbjct: 297 RVINDYARKNGIFKDSDANLSGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRTVTD 356 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F+ +L++NP A K++E ++ ++ + RK+A+ LPGKLADC Sbjct: 357 TFFSDHFEKFLMENPQVARKVVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADC 416 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ + Sbjct: 417 SSKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAI 476 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + RY K++IMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 477 ITAAGTGIGDDFEISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 536 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ QG + YA++++ +I EE K K I R+KGLGEM QL ET MD Sbjct: 537 PPLYKVQQGKRVEYAYNDKQLDQIFEELPKA--PKPNIQRYKGLGEMNPEQLWETTMDPG 594 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + ++ LMG K + R +FI++ A ++ ++ Sbjct: 595 TRTLLQVSLEDAI----EADETFEILMGDKVEPRRQFIEDNAVYVKNLD 639 >gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 386/645 (59%), Gaps = 20/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ I + + Sbjct: 5 YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + V DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN Sbjct: 65 GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 LS+ V + + TI+ QK+ RGIP L+ K +K GT I+F+ DP IF + ++ Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKIKGNT-DKTGTIISFQADPLIFTETVIYN 182 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L Q A+L+ +K D+ + + E F++ GG+ Y++ +++S I Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEESKIESFHYEGGITEYVKFLNQSKSKI 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342 ++I E+ G TVE A+ + + + N I T EGG HE G ++ALTR I Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 KYA+ + K+ SI +D I+SV EP+F GQTKTKL + + + + Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 + +L++NP +A ++E V+ + R+ RK ++ RK+ + L KLADC Sbjct: 355 AIERFLMENPTQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +E++IVEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 ++ RY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL++ Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I+ G YA++E+ +IL+ + K I R+KGLGEM A QL +T MD KRTLL Sbjct: 535 ISWGRNFQYAYNEQELNEILKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++++ + + + LMG + + R +FIQ A + D+ Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKEFIQNNAQYATDIDA 631 >gi|163844743|ref|YP_001622398.1| DNA topoisomerase IV subunit B [Brucella suis ATCC 23445] gi|163675466|gb|ABY39576.1| DNA topoisomerase IV, B subunit [Brucella suis ATCC 23445] Length = 699 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 426/701 (60%), Positives = 532/701 (75%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSP-----------------AFANQSASDNYD 45 DDS DLFS + ++ + + P A S D+Y+ Sbjct: 2 DDSNDLFSRVVNNARERQMERQTGENTVAQPVVQPAPSAPKPVPAAAKAPPAASGGDDYN 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++D G Sbjct: 62 ASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTVDKEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 F+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 FVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A FD Sbjct: 182 SDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAHFDPH 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L ++ Sbjct: 242 RLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKEHQVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTRG+K Sbjct: 302 REVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTRGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+RDPF Sbjct: 361 YAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAIRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRL GKLADC+QN A G Sbjct: 421 DHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLSGKLADCTQNAAAGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 R YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++Q Sbjct: 541 RKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLYRLSQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTLLRV+ Sbjct: 601 GGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTLLRVQ 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 660 VDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 698 >gi|320531090|ref|ZP_08032119.1| DNA gyrase, B subunit [Selenomonas artemidis F0399] gi|320136672|gb|EFW28625.1| DNA gyrase, B subunit [Selenomonas artemidis F0399] Length = 684 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 259/685 (37%), Positives = 380/685 (55%), Gaps = 32/685 (4%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSAS---------DNYDASSIRILEGLEPVRMRPGM 64 P + ++ + + PD A + +Y A I++LEGLE VR RPGM Sbjct: 18 PLTPEEMKEAAEMADAPDLSGIAISAEEMGADVTAVDADYGAGQIQVLEGLEAVRKRPGM 77 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIG T E+ LHHL EV+DN++DE +AGY + + V++ + +TVVDNGRGIPV+ H Sbjct: 78 YIGSTSERGLHHLVYEVVDNSIDEALAGYCDTVAVTIHRDNSITVVDNGRGIPVDMHE-- 135 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 +E++LT LHAGGKF Y++SGGLHGVG+SVVNALS + V V R I+ F Sbjct: 136 SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVNALSSSMDVQVRRDGHIYEIAF 195 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 +RG L + GTR+ F PDP+IF + L + A+L+ + Sbjct: 196 ARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT-YSFETLKHRLRELAFLNHGITIT 253 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304 + ++ E F+F GG+++++ + I+ E K T VE Sbjct: 254 LTDER-----GEELRSETFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDT---VVEI 305 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ + + I S+ N I T+EGGTH +G ++ALTR +A ++ ++ +D Sbjct: 306 AMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLNVLKEKDGNLSGED 365 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + ++S+ +REP+F GQTKTKL + + + V++ + + Y +NP K+L+ Sbjct: 366 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPNVTKKVLDK 425 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + S R RK RE RK A+ LPGKLADCS E++IVEGDSAGGSAKQ Sbjct: 426 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 485 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+R QA+LPLRGKILNV A +KI N +I ++ A G ++ RY K+II Sbjct: 486 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIII 545 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 MTDADVDGAHI +LLLTFFY+ M L++ H+++ PPL++I + K Y + +E + K Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKK 605 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 L+E + G + I R+KGLGEM QL ET M+ ++RT+LRV + + Sbjct: 606 LDEIGRDG---VTIQRYKGLGEMNPEQLWETTMNPSERTMLRV----AAEDAEAADELFT 658 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG K + R +FI+E A + ++ Sbjct: 659 ILMGDKVEPRRQFIEENARLVRNLD 683 >gi|170287901|ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. RQ2] gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2] Length = 636 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 264/651 (40%), Positives = 381/651 (58%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL EV+DN++DEV+AGY + I V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEVLAGYCDWIRVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++P+E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GG+ Y++ + Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I +TEK G VE A + + +I S+ NTI T +GGTH + + Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKS 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y + K+ S +D+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 TLTRLMNEYGKKHNFLKKDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 V A+R+ NP +L ++ + R ++ RE+ RK ++ LPGKLA Sbjct: 352 VTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +++ N+QI Sbjct: 412 DCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + E LRY ++IIMTDAD+DGAHI +LLLT FY+ M LIEQ +++ Sbjct: 472 DIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + ++ + E+ + +IEI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIKAGREEFYVYSDQELAEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678] gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678] Length = 635 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 261/647 (40%), Positives = 379/647 (58%), Gaps = 21/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG + I +S++ Sbjct: 5 EYGADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSEIYISIN 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRGIPVE HPK STLE +LT LHAGGKF Y++SGGLHGVG+SVV Sbjct: 65 PDGSVTVKDDGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD L V+R ++ Q++ RG+P LE + GT ITF PD IF + F Sbjct: 124 NALSDWLVAEVSRDGKVYRQEYKRGVPTGKLEVVSESSKDSGTSITFMPDASIFDEI-EF 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++L+ +K + +E E+ F++ GGL Y++ ++ Sbjct: 183 KYETLEYRFRELSFLNKVIKIEFEDKREGQEESKT-----FHYTGGLVEYIKYLNRTKTP 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I +I K + T+E A+ + + I S+ N I T EGG H SG + ALT+ Sbjct: 238 IHDQIIYV---DKIANDCTIELALQYTDAYTENIYSFANNINTHEGGVHLSGFKAALTKC 294 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA ++ ++ +D+ I+SV + +P+F GQTKTKL + + V++ Sbjct: 295 VNDYARRNNILKEKDPNLSGEDIREGLTAIVSVKLPDPQFEGQTKTKLGNTFMRGLVDSI 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + +L +NP A ++E + R +K R+ RK A+ LPGKLADCS+ Sbjct: 355 ANEEIGAFLEENPSVAKLVIEKCLRAQRAREAAKKARDLTRRKNALEFTSLPGKLADCSE 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +E+F+VEGDSAGGSAK R+R+ QA+LPLRGKILNV + +KI ++++I +++ Sbjct: 415 KSPEKSEIFLVEGDSAGGSAKSGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A GC + E LRY K++IMTDADVDGAHI +LLLTFF++ M LIE +++ PP Sbjct: 475 AFGCGIGEDFEPEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIEGGYVYAAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF++ +G K YA + +L+E G+ ++SR+KGLGEM A QL ET MD R Sbjct: 535 LFKVKKGKKEYYAFSDNELSSLLDEV---GRQGADVSRYKGLGEMNAEQLWETTMDPESR 591 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 TLL+V I+ + + + LMG K R FI+ A ++ ++ Sbjct: 592 TLLQVTIDDAIM----ADEIFSMLMGDKVAPRRDFIEANAKYVTNLD 634 >gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631] gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631] Length = 632 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 25/654 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P + A +Y A +I +L+ ++ VR RPGMY+G T + HHL E++DN++DE +AG Sbjct: 2 PISSTFLAMSDYTAEAIEVLDDIQAVRKRPGMYVGSTGSRGFHHLLWEIVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 Y N I V+L +G +V DNGRGIPVE HP K LEI++T LHAGGKF Y++SG Sbjct: 62 YCNRIVVTLHKDGSASVEDNGRGIPVEEHP-IFKKPALEIVMTKLHAGGKFSKKAYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS+ L V V R I+ Q++ RG P++PL+ + + GT+I F+PD Sbjct: 121 GLHGVGLSVVNALSEWLEVWVKRNGKIYYQRYERGKPVTPLKVVGETKE-TGTKIRFKPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF K FD + + + A+L+ ++ ++ + +EFY G+ + Sbjct: 180 PEIFEVK-EFDYDVVAERLRELAFLNKGLRIKLIDER-------TGKVKEFYSEEGIVGF 231 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 ++ + + +I +++ EK G VE A + E+ + ++ N I T EGGTH Sbjct: 232 VKYLNKGKDVI-TDVVYISGEKNGI---NVEIAFQFTNEDFENLLAFANNIHTIEGGTHV 287 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 SG R LTR I +Y + K+ I D+ +LSV + EP+F GQTKTKL + D Sbjct: 288 SGFRAGLTRAINEYGK-KHVKKFTPISGSDIREGLTAVLSVKVPEPQFEGQTKTKLTNSD 346 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + VE+ + + F +L ++P EA +++E + + R R+ RE+ ++ A L LPG Sbjct: 347 VKTVVESLVYNNFLRWLEEHPSEAQRIIEKCLLAMKAREMARRARELVKRKAEISLTLPG 406 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELFIVEG+SAGGSAKQAR+R QAVLP+RGKI+NV AG + N+ Sbjct: 407 KLADCSSKNVEERELFIVEGESAGGSAKQARDRRFQAVLPIRGKIINVEKAGMLRALKNE 466 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I + A+G + +RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 467 EIKAIASAIGGGIGKDFDLSKVRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGM 526 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+R+ +G K Y + E+ + +L++ GK E+ RFKGLGEM QL ET Sbjct: 527 VYIALPPLYRVKKGDKVYYVYSEKELRDVLKKI-----GKAEVQRFKGLGEMNPEQLWET 581 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 AM+ R L++V I L + LMG DER +FI A + ++ Sbjct: 582 AMNPKTRKLVKVTIEDAL----IAEKMFRILMGENVDERKEFILNHAKEVKNLD 631 >gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787] gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787] Length = 638 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 263/650 (40%), Positives = 388/650 (59%), Gaps = 19/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I VS Sbjct: 2 SAEYGADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNAVDEALAGYCDTIFVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INEDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS+ L V + + ++ Q++ RG + L+ ++ K GT++TF PD +IF + Sbjct: 121 VVNALSEWLEVEIYNEGKVYKQRYERGKVVYKLKVIDECDAQKTGTKVTFLPDKEIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L + + A+L+ +K ++ P ++ F++ GG+K ++Q ++ Sbjct: 181 V-FDYDTLKQRFREMAFLTKNLKIVLKDER-----PEEPIEKTFHYEGGIKEFVQYLNKS 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 ++ + +I + EK G VE A+ + + T + N I T EGGTH G R AL Sbjct: 235 KTPLYEQIIYCEGEKDGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNAL 291 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ +YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ V Sbjct: 292 TKTFNEYARKNKLLKDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 +N + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLAD Sbjct: 352 DNIVSTQLEIFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 412 CSDKDPANCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI++ +++L Sbjct: 472 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLA 531 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ +E KIL E + G K I R+KGLGEM A QL ET MD Sbjct: 532 QPPLYKLEKNKKVWYAYSDEELNKILLEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDP 589 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ S + + LMG K + R +FI+E A +++++ Sbjct: 590 EHRILLRVTMDE--ESTSELDLTFTTLMGDKVEPRREFIEENAKYVNNLD 637 >gi|218291098|ref|ZP_03495121.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238983|gb|EED06190.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1] Length = 637 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 254/654 (38%), Positives = 372/654 (56%), Gaps = 21/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A++ YD S I +LEGL+ VR RPGMYIG T K LHHL E++DNA+DE +AG Sbjct: 1 MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSAKGLHHLVWEIVDNAVDEALAGRC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V + + +TV+DNG G PV HPK + +E +LTTLHAGGKF Y++SGGL Sbjct: 61 TRIVVQVHPDNSVTVIDNGAGFPVGIHPK-TGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ + V V R I+ Q++ RG PL L+ +K GT+++F+PDP+ Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F A L+ + A+L+ ++ + ++E ++ F + GG+ +++ Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDERE------GGKRAVFKYDGGVAEFVR 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 +++ ++ + K VE A+ + + S+ N I T EGGTHE+G Sbjct: 233 WLNQSKDVLFDDPIYVSAVKDDV---AVEIALQYNDGYNATVYSFANNINTAEGGTHEAG 289 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + S+ DD+ ++SV + EP+F GQTKTKL + + Sbjct: 290 FKSALTRVINDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + VE + +L +NP A K+++ I + R R+ RE+ R + LPG Sbjct: 350 VRGIVETLFAERMQMFLEENPSIARKIVDKCILAARAREAARRARELTRSKKMDVTSLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS +ELF+VEGDSAGGSAK R+ QA+LPLRGKI+NV A +K+ N+ Sbjct: 410 KLTDCSSKDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANE 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A G + RY K++IMTDAD DG+HI LLLT FY+ M LI+ + Sbjct: 470 EIRAIITACGTGIGDDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL++I +G YA+ + ++IL+E + G + + R+KGLGEM A QL ET Sbjct: 530 IYIAQPPLYKIEKGKVVRYAYSDAQLEQILQEMGREG---VRLQRYKGLGEMNADQLWET 586 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLLRV + + D + LMG K + R FI E A F+ ++ Sbjct: 587 TMDPESRTLLRVTMEDAM----DADMIFSILMGDKVEPRRDFIAEHARFVRNLD 636 >gi|331086961|ref|ZP_08336037.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409622|gb|EGG89061.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 638 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 263/650 (40%), Positives = 389/650 (59%), Gaps = 19/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE + GY + I VS Sbjct: 2 STEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALGGYCDTIFVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INKDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS L V + + I+ Q++ RG L+ + +K GT++TF PD +IF + Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L + + A+L+ +K + ++ ++ F++ GG+K ++Q ++ Sbjct: 181 -EFDYNILKQRFREMAFLTKNLKIVLADER-----PEERIEKTFHYEGGIKEFVQYLNKS 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 ++ + +I + +K G VE A+ + + T + N I T EGGTH G R AL Sbjct: 235 KTPLYEQIIYCEGQKDGV---AVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNAL 291 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ +YA + + ++ +D+ I+SV I++P+F GQTK KL + +A+ V Sbjct: 292 TKTFNEYARKNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 ++ L + +L QNP A ++E V+ + R+ + RK+A+ + LPGKLAD Sbjct: 352 DSVLSTQLEIFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ A E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 412 CSEKDASKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 472 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLA 531 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ +E KIL+E + G K I R+KGLGEM A QL ET MD Sbjct: 532 QPPLYKLEKNKKVWYAYSDEELNKILQEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDP 589 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ S + + LMG K + R +FI+E A ++ ++ Sbjct: 590 EHRVLLRVTMDE--ESSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 637 >gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP-6] gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP-6] Length = 630 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 265/645 (41%), Positives = 383/645 (59%), Gaps = 25/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGLE VR RP MYIG TD LHHL EV+DN++DE + G+ + I+V+++ Sbjct: 7 YDASHIQVLEGLEAVRRRPSMYIGSTDSLGLHHLVYEVVDNSVDEALGGFCSEIDVTINP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 G +++ D+GRGIPV+NHP+F N+ LEI+LT LHAGGKFD+ +Y +SGGLHGVG+SVVN Sbjct: 67 GGSVSIRDDGRGIPVDNHPQF-NRPALEIVLTVLHAGGKFDHESYGVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ + V V R I+ Q+F +G +S LE++ + GT ITF+PD IF + F Sbjct: 126 ALSEWMEVQVRRNGRIYWQRFEKGKVVSDLEERG-SSDHTGTTITFKPDTSIFEET-EFS 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ +K D+ E F + GG+ ++++ +N+ ++ Sbjct: 184 FDTLSSRLRELAFLNRGLKITIKDDRSDKEN-------IFQYAGGIISFVEYLNKNKEVL 236 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + K GT VE A+ + I SY N I T EGGTH G R ALTR + Sbjct: 237 HEQPVYFSRSKNGTQ---VEVALQYNNSYAENIFSYANIINTREGGTHLMGFRAALTRTV 293 Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 YA + K + + +DL V ++SV + +P+F GQTKT+L + + VE+ + Sbjct: 294 NDYARNNKLFKNEMKLGGEDLREGLVAVISVKLPDPQFEGQTKTRLGNSSIRGIVESMVA 353 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 + Y +NP+ AT ++E E R RK +E RK A+ LPGKLADCS N Sbjct: 354 EGLGEYFEENPLVATTIVEKAAEAMRAREAARKAKELTRRKNALSSGGLPGKLADCSDND 413 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E++IVEG+SAGGSAKQ RNR QA+LPLRGKILNV A +KI N +I +++ A Sbjct: 414 PAKCEIYIVEGESAGGSAKQGRNRHFQAILPLRGKILNVERARLDKILKNAEIRNMIVAF 473 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + RY KV+IMTDADVDG+HI +LLLTFFY+ M LI+ ++F+ PPL+ Sbjct: 474 GTGVGDDFDISKARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVFIAQPPLY 533 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G ++ YA+ +E +++ G K I R+KGLGEM QL ET MD R + Sbjct: 534 QVKKGKQANYAYSDEQLNELVA-----GMNKPVIQRYKGLGEMNPEQLWETTMDPEGRIM 588 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV + + + LMG + + R +FI++ A ++ ++ Sbjct: 589 LRVTLEDAV----EADRIFTILMGDQVEPRREFIEKHAKYVKNLD 629 >gi|193211690|ref|YP_001997643.1| DNA gyrase subunit B [Chlorobaculum parvum NCIB 8327] gi|193085167|gb|ACF10443.1| DNA gyrase, B subunit [Chlorobaculum parvum NCIB 8327] Length = 647 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 264/662 (39%), Positives = 382/662 (57%), Gaps = 25/662 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ Q+A+++Y A++I++L+G+E VR RP MYIG + LHHL E++DN++DE + Sbjct: 3 ETDIQTAQNAANDYGATNIQVLDGIEHVRKRPAMYIGDIHSRGLHHLVYEIVDNSIDETL 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ + I V+++ +G +TV D GRGIPV+ HP KS LE+++T + AGGKFD Y++ Sbjct: 63 AGFNDYIHVAMNPDGSVTVTDRGRGIPVDIHP-VKKKSALELVMTVIGAGGKFDKGAYKV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS+ V R IF Q + RG+P +E+ +++GT++TF+ Sbjct: 122 SGGLHGVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQGGVEEVG-TTDQKGTKVTFK 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF F ++ + A+L+ ++ + E F+F GGL+ Sbjct: 181 PDPDIF-KITEFRKDIIIDRMRELAFLNSNLRIIVQDAEGFEET--------FHFEGGLR 231 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ NR + E E++ T VE A+ + + + SY N I T EGGT Sbjct: 232 EFVRFTDANRLSLLKEPIFLSGERESTM---VEIALQYNDSYQENVFSYVNNINTHEGGT 288 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR + YA+ + + I DD ++SV + EP+F GQTKTKL Sbjct: 289 HVTGFRKALTRTLNAYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKL 348 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + Q VE + + + NP ++E V + R RK +E RK+ + Sbjct: 349 GNSETQSIVETIVNEQLAEFAESNPGTLKLIIEKVKGAAISREAARKAKELTRRKSVLES 408 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K Sbjct: 409 SGLPGKLADCSINDPDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHK 468 Query: 507 IRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + N++I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M Sbjct: 469 MLENEEIKTIILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRS 528 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEM 623 LIE +F+ PPL+ + G + YA DEE + I E+ KK GK + I R+KGLGEM Sbjct: 529 LIEAGKVFIAQPPLYLVKAGREQQYAWDEEERASITEQMKKLQKGKANVSIQRYKGLGEM 588 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL T MD R+LL+V + + + + LMG K + R FI++ A ++ Sbjct: 589 NPEQLWSTTMDPEHRSLLQVTVENAM----EADQVFSTLMGDKVEPRRNFIEQNAKYVRR 644 Query: 684 VG 685 + Sbjct: 645 LD 646 >gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 257/645 (39%), Positives = 386/645 (59%), Gaps = 20/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ I + + Sbjct: 5 YTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILK 64 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + V DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN Sbjct: 65 GEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVN 123 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 LS+ V + + TI+ QK+ RGIP L+ K +K GT I+F+ DP IF + ++ Sbjct: 124 GLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTETVIYN 182 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L Q A+L+ +K D+ + + E F++ GG+ Y++ +++S I Sbjct: 183 YETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFLNQSKSKI 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGI 342 ++I E+ G TVE A+ + + + N I T EGG HE G ++ALTR I Sbjct: 238 HNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVI 294 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 KYA+ + K+ SI +D I+SV EP+F GQTKTKL + + + + Sbjct: 295 SKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 354 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 + +L++NP +A ++E V+ + R+ RK ++ RK+ + L KLADC Sbjct: 355 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 414 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +E++IVEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G Sbjct: 415 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 474 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 ++ RY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL++ Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I+ G YA++E+ ++L+ + K I R+KGLGEM A QL +T MD KRTLL Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLL 590 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++++ + + + LMG + + R FIQ+ A + D+ Sbjct: 591 QIKLEDAI----EADQVFSMLMGEEVEPRKDFIQKNAQYATDIDA 631 >gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1] gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1] Length = 639 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 268/654 (40%), Positives = 385/654 (58%), Gaps = 22/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +Y A I++LEGLE VR RPGMY+GGTD KALHHL EV+DN++DE +AG + Sbjct: 2 ATPVNTSYGAKDIQVLEGLEAVRRRPGMYVGGTDLKALHHLVYEVVDNSIDEALAGACDH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV DNGRGIPV+ HP+ KS LE+++T LHAGGKF + +Y++SGGLHG Sbjct: 62 IQVTIHPDSSVTVEDNGRGIPVDIHPE-KQKSALEVVMTVLHAGGKFGSGSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VG+S VNALS+ V V R + Q++ RG+P+ P++ K + N+ GT+ TFR DP I Sbjct: 121 VGVSAVNALSEWCEVEVRRDGKVHFQRYERGVPVEPVKVIGKCKPNETGTKTTFRFDPTI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L++ + A+++ +V ++ E FYF GG+ ++++ Sbjct: 181 FKGDLDYKFDTLVQRFREMAFVTRKVTIRLIDERASRE-------MSFYFEGGITSFVRY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 NR ++ + + E +G +E AI + + + S+ NTI T +GGTH +GL Sbjct: 234 LNRNREVLHPVV-YAEKEVEGV---GIEAAIQYTDAYAESVYSFANTINTIDGGTHLTGL 289 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR I YA + + DD I+SV +P+F QTK KL++ + Sbjct: 290 RAAITRVINDYARRNNFLKDGDPNFSGDDTREGLTAIVSVKHPDPQFESQTKVKLMNPEV 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 Q V+ + + F +L +NP A +++ + + R RK R+ V RK+ + L LPG Sbjct: 350 QTYVQQVVGEAFSTFLEENPQAAKAIIQKCLTSARARDAARKARDLVIRKSTLESLTLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ TEL+IVEGDSAGGSAKQ R+R QAVLPLRGKILN A +KI +N Sbjct: 410 KLADCSERDPSKTELYIVEGDSAGGSAKQGRDRHFQAVLPLRGKILNTERARLDKILSNN 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ ALG + LRY +VIIMTDADVDG+HI +LLLTFF++ M LIE H Sbjct: 470 EVKALISALGTGIGDSFDLSGLRYGRVIIMTDADVDGSHIRTLLLTFFFRYMLPLIEDGH 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 LF+ PPL+RI + YA+ + + +IL+E + K I R+KGLGEM +QL ET Sbjct: 530 LFIAQPPLYRIAYKNQVRYAYTDADRDRILKELGITPE-KASIQRYKGLGEMNPTQLWET 588 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL V + + + LMG R KFIQ A + ++ Sbjct: 589 TMNPENRTLLMVTVED----AAAADRTFDMLMGAAVPPRTKFIQTHARDVRNLD 638 >gi|260891935|ref|YP_003238032.1| DNA gyrase, B subunit [Ammonifex degensii KC4] gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4] Length = 636 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 259/654 (39%), Positives = 386/654 (59%), Gaps = 23/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y ASSI+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 PQEEKEREEYRASSIQILEGLEAVRRRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGFC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV + + + V DNGRGIPV+ HP+ + +E++LTTLHAGGKF Y++SGGL Sbjct: 62 TEIEVVIKQDNSVLVKDNGRGIPVDIHPQA-GRPAVEVVLTTLHAGGKFGGGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L V V R+ I+ Q+F RG P++ LE + ++ GT + F+PD + Sbjct: 121 HGVGVSVVNALSEWLEVEVHREGRIWRQRFERGRPVTDLEAIGET-DRTGTTVHFKPDHQ 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F L + + ++L V+ ++ E F+ GGL+ +++ Sbjct: 180 IFEEVV-FSQDYLTQRLRELSFLVPEVRIVLRDERTGEE-------FVFHHKGGLRDFVR 231 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 R ++ + E++G VE A+ + + I SY NTI T +GGTHE+G Sbjct: 232 HLNRAREVLHPDPIYLAGEREG---MVVEAALQYHDGYAESIFSYANTIRTVDGGTHEAG 288 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR + Y + +D+ +++V + +P+F GQTKTKL + Sbjct: 289 FKAALTRVVNDYGRRHGIIPENFQLAGEDVREGLTAVVAVKVPDPQFEGQTKTKLGNTQV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451 +R VE+ + + + +NP A ++E + + R R+ RE+ R+ + LPG Sbjct: 349 RRVVESIVGEGLASFFEENPSIARLIVEKALAAARAREAARRARELARRKGLLESTSLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ TEL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N+ Sbjct: 409 KLADCSERDPAKTELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANE 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ A+G + +RY K+IIMTDADVDGAHI +LLLTFF++ M LIE + Sbjct: 469 EIKALITAIGAGIGEDLDLKKVRYHKLIIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+R+ +G +S YA+++ +K+L ++G + I R+KGLGEM A QL ET Sbjct: 529 VYIAQPPLYRVRKGKESFYAYNDAELEKLLSTLGRNG---VTIQRYKGLGEMNAEQLWET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ KR +L+V + + + + LMG K + R +FI A ++ ++ Sbjct: 586 TMNPEKRVILQVTLEDAV----AADELFSTLMGDKVEPRREFISRYARYVRNLD 635 >gi|253582585|ref|ZP_04859806.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] gi|251835455|gb|EES63995.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] Length = 635 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 377/649 (58%), Gaps = 20/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +LEGLE VR RPGMYIG T E+ LHHL E++DNA+DE +AGY + I V+ Sbjct: 2 SNNYQAENITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNAVDEALAGYCDKIVVN 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + V+DNGRGIPV HPK+ NKS LEI+LT LHAGGKF+N Y++SGGLHGVG+S Sbjct: 62 ILPDNIIEVIDNGRGIPVGIHPKY-NKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS VTV I+ QK++RG+P +++ GT + F+ D +IF Sbjct: 121 VVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTTEH-GTTVRFKADHEIFETLI 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + AYL+ ++ S ++ K EEF F GG+ +L+ E Sbjct: 180 -YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEFKFEGGIVDFLKEITEET 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339 + E E V+ A + ++ I S+ N I T EGGTH SG R ALT Sbjct: 234 EKLIPEPIYMTGEVDNV---AVDIAFLYTVNQSEIIYSFVNNINTHEGGTHVSGFRTALT 290 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I + ++ + +D+ I+SV + +P+F GQTKTKL + + V Sbjct: 291 RVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + L NP + ++E ++ + R +K RE+ + + + LPGKLADC Sbjct: 351 TLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV AG K N ++ + Sbjct: 411 SSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+I+MTDADVDGAHI +LLLTF Y+ M DLI ++++ Sbjct: 471 ITAFGTSIGDSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++IT G + YA+ + ++I + F+ K K + R+KGLGEM QL ET M+ + Sbjct: 531 PPLYKITTGKQIRYAYSDRELKEITDVFEGDDK-KYTLQRYKGLGEMNPEQLWETTMNPD 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ + +KLMG K D R +FI+E A ++ ++ Sbjct: 590 TRTLLQVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAVYVKNLD 634 >gi|313894727|ref|ZP_07828288.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976636|gb|EFR42090.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 684 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 259/685 (37%), Positives = 380/685 (55%), Gaps = 32/685 (4%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSAS---------DNYDASSIRILEGLEPVRMRPGM 64 P + ++ + + PD A + +Y A I++LEGLE VR RPGM Sbjct: 18 PLTPEEMKEAAEMADAPDLSGIAISAEEMGADVTAVDADYGAGQIQVLEGLEAVRKRPGM 77 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIG T E+ LHHL EV+DN++DE +AGY + + V++ + +TVVDNGRGIPV+ H Sbjct: 78 YIGSTSERGLHHLVYEVVDNSIDEALAGYCDTVAVTIHRDNSITVVDNGRGIPVDMHE-- 135 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 +E++LT LHAGGKF Y++SGGLHGVG+SVVNALS + V V R I+ F Sbjct: 136 SGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVNALSSSMDVQVRRDGHIYEIAF 195 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 +RG L + GTR+ F PDP+IF + L + A+L+ + Sbjct: 196 ARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT-YSFETLKHRLRELAFLNHGITIT 253 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304 + ++ E F+F GG+++++ + I+ E K T VE Sbjct: 254 LTDER-----GEELRSETFHFDGGIRSFVSHLNRKKETINEEPIYFNGVKDDT---VVEI 305 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDD 361 A+ + + I S+ N I T+EGGTH +G ++ALTR +A ++ ++ +D Sbjct: 306 AMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARRLSVLKEKDGNLSGED 365 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + ++S+ +REP+F GQTKTKL + + + V++ + + Y +NP K+L+ Sbjct: 366 VREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYFEENPNVTKKVLDK 425 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + S R RK RE RK A+ LPGKLADCS E++IVEGDSAGGSAKQ Sbjct: 426 ALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCEIYIVEGDSAGGSAKQ 485 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+R QA+LPLRGKILNV A +KI N +I ++ A G ++ RY K+II Sbjct: 486 GRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIII 545 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 MTDADVDGAHI +LLLTFFY+ M L++ H+++ PPL++I + K Y + +E + K Sbjct: 546 MTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKK 605 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 L+E + G + I R+KGLGEM QL ET M+ ++RT+LRV + + Sbjct: 606 LDEIGRDG---VTIQRYKGLGEMNPEQLWETTMNPSERTMLRV----AAEDAEAADELFT 658 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG K + R +FI+E A + ++ Sbjct: 659 ILMGDKVEPRRQFIEENARLVRNLD 683 >gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum SI] gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum SI] Length = 643 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 265/657 (40%), Positives = 391/657 (59%), Gaps = 24/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + + + Y A I+ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG Sbjct: 6 TGDTSNNNNSKYGAEEIQILEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEAMAG 65 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + IEV L+ +G TV+DNGRGIPV+ HPK + +E+++T LHAGGKF Y++SG Sbjct: 66 FCDRIEVILNEDGSATVIDNGRGIPVDIHPK-TGRPAVEVVMTMLHAGGKFGGGGYKVSG 124 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L V V R ++ Q++SRGIP++ L K K GT++TF PD Sbjct: 125 GLHGVGVSVVNALSLWLEVEVKRDGKVYYQRYSRGIPVTGLLVKGKSS-ATGTKVTFMPD 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF D F+ L + + ++L+ VK + E F GG+ + Sbjct: 184 PEIFEDLI-FNQDILAQRLRELSFLNMGVKIILKDRRSGQETV-------FQHDGGIMDF 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ ++++ + + + +K VE A+ + + I SY N I T +GGTHE Sbjct: 236 VRYLNKSKTPLHGKPIYIQKQKDDVL---VEVALQYTDTYVESILSYANNINTIDGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G + ALTR I Y + ++ +D+ ++SV + EP+F GQTKTKL + Sbjct: 293 AGFKAALTRVINDYGRKYNLLKNGAGNLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + V++ + + +L +NP A ++LE + S R RK RE RK+A+ Sbjct: 353 SEVRSIVDSVVGEGLGIFLEENPSIARRILEKAVTASRAREAARKARELTRRKSALEGST 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI Sbjct: 413 LPGKLADCSERDPSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ ALG ++ RY K+I+M+DADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 ANEEIRAMITALGTGIGEEFDVSKARYHKIILMSDADVDGAHIRTLLLTFFYRYMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + ++F+ PPL+R+ +G YA+ + +K+L++ + G + I R+KGLGEM A QL Sbjct: 533 KGYVFIAQPPLYRVKKGKLEKYAYSDAELEKLLDQIGRDG---VSIQRYKGLGEMNAEQL 589 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD RT+++V + + + + LMG + + R FIQE A + ++ Sbjct: 590 WETTMDPETRTVMQVNLEDAI----EADAVFSMLMGDRVEPRRDFIQENARLVRNLD 642 >gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476] gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476] Length = 648 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 256/657 (38%), Positives = 378/657 (57%), Gaps = 19/657 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + S +YDA I++LEGLE VR RPGMYIG T + LHHL EV+DNA+DE +AGY Sbjct: 2 AEKQSSHYDAGDIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEVVDNAVDEALAGYCTK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V + + +TV+DNGRGIPVE HPK T+E++LT LHAGGKF Y++SGGLHG Sbjct: 62 IDVIIHEDNSITVIDNGRGIPVEKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS L V V R + FSRG + L + + +TF PDP+IF Sbjct: 121 VGVSCVNALSTRLEVEVCRDGKKYGIAFSRGKTVEKLHQIGTSKTTGT-TVTFWPDPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 D +D L + + A+L+ ++ + +++ E+ + E F + GG+ +++ Sbjct: 180 TDTLVYDYETLQERFREMAFLNKGLRIELTDERQQDEEG-NFKHETFKYDGGIVDFVKYL 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336 + + ++ I+ GT ++W+ ++ I ++ N I T EGGTH G + Sbjct: 239 NQGKETLNKPIYFEAENADGTVEVVMQWSTSYGTNG--IMAFANNINTHEGGTHLDGFKN 296 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA ++ ++ DD I+SV + +P+F GQTKTKL +++ + Sbjct: 297 ALTRTINDYARSKGLLKEKDKNLTGDDAREGLAAIISVKLHDPQFEGQTKTKLGNVEIRG 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ YL +NP A +++ + + R RK RE+ R+ + +PGKL Sbjct: 357 LVQGAVTKGLSEYLEENPTPAKRIVGKASQALKAREAARKAREMTRRKGVLDSFSMPGKL 416 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +E+FIVEGDSAGGSAKQAR+R QA+LPLRGKILNV AG + ++ I Sbjct: 417 ADCSSREPALSEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 476 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G Y ++ RY ++IIMTDADVDGAHI LLLTFFY+ M DLI + +++ Sbjct: 477 SSLITAIGTNIGDDYNGDNARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYIY 536 Query: 574 LISPPLFRITQ-----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PPL+ + + G Y +++E K +I+ + K +I R+KGLGEM QL Sbjct: 537 IAQPPLYGLKKKNSASGKILKYIYNDEAKDQIMAQL--EDPDKYDIQRYKGLGEMDPEQL 594 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ RTL++V I + +++ LMG + R +FIQ+ A + + Sbjct: 595 WETTMEPETRTLIQVSIED----AAAAERAVSDLMGDDVEPRKEFIQKNALDVRFLD 647 >gi|256419449|ref|YP_003120102.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588] gi|256034357|gb|ACU57901.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588] Length = 659 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 267/662 (40%), Positives = 391/662 (59%), Gaps = 21/662 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 A AS YDA SI++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY Sbjct: 8 APTPASSGYDAGSIQVLEGLEAVRKRPAMYIGDIGVKGLHHLVYEVVDNSIDEALAGYCK 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + + V D+GRGIP HPK +S LE+++T LHAGGKFD +TY++SGGLH Sbjct: 68 NISVTICEDNSILVTDDGRGIPTGMHPK-EGRSALEVVMTVLHAGGKFDKNTYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALSD+LHVTV R+ +F Q++ RG+P + + + GT + F+PD +I Sbjct: 127 GVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVHFKPDNEI 185 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + AYL+ ++K + D+E E G E FY GG+ ++Q Sbjct: 186 FKETI-YNREILAGRLRELAYLNRKIKITLTDDREKDE-AGNSVTETFYSEGGIIEFVQM 243 Query: 276 KLEN--RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 N R+ + + + + VE A+ + + I SY N I T EGGTH + Sbjct: 244 LDRNGRRNGLLPDPIFIEAH-DASSNVAVEVAVIYNDSFSENIFSYVNNINTIEGGTHVA 302 Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R A+TR K Y + + K I + DD I+SV + EP+F GQTKTKL + Sbjct: 303 GFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTKTKLGNS 362 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 D V++++ D YL ++P EA ++ V+ ++ R RK R++ ++ + + L Sbjct: 363 DVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSVLSGSGL 422 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS+N EL++VEGDSAGG+AKQ RNRS QA+LPLRGKILNV A KI Sbjct: 423 PGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAMEHKIYE 482 Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ ALG ++ ++ LRY K+IIMTDADVDG+HIA+L+LTF ++ M Sbjct: 483 NEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLILTFIFRYMK 542 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++EQ ++++ PPL+ + + + +YA EE ++ + + + + I R+KGLGEM Sbjct: 543 AMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKEDSVTIQRYKGLGEMN 602 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET M+ + RTL +V I S + + LMG + R +FI+ A + + Sbjct: 603 AEQLWETTMNPDNRTLKQVTIE----SAAEADRVFSMLMGDEVPPRREFIESHAKYAK-I 657 Query: 685 GT 686 Sbjct: 658 DA 659 >gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC 43243] gi|217989766|gb|EEC55777.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC 43243] Length = 638 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 378/648 (58%), Gaps = 18/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY I+V ++ Sbjct: 3 EYGAEQIQILEGLEAVRKRPGMYIGTTSSRGLHHLVYEIVDNAVDEALAGYCTEIDVLIN 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRG+PV+ + K K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 63 KDNSITVTDNGRGVPVDINAKA-GKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 121 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V R I+ Q++ RG + PL + + GT + F PD +IF + Sbjct: 122 NALSEWLEVRVKRNGHIYEQRYQRGKVMEPLTIVGECPLEETGTMVHFLPDKEIFTETTV 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L+ +K ++E E+ + F++ GG+K +++ ++++ Sbjct: 182 YEYDILKQRLREMAFLTKGIKIILRDEREGIEQERV-----FHYEGGIKEFVEYLNKSKT 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +I + K VE A+ + ++ N I T EGGTH +G + ALT+ Sbjct: 237 PLYEQIIYCEGVKNNVQ---VEVAMQHNDSYTESTFTFVNNINTPEGGTHLAGFKNALTK 293 Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ DD+ I+SV I +P+F GQTK KL + +A+ V++ Sbjct: 294 TFNDYARANRILKDSDQNLTGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTEARTAVDS 353 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + ++L QNP A + E + R RK R+ RKTA+ LPGKLADC+ Sbjct: 354 VVSEQLTYFLEQNPAVAKAICEKSLLAQRARDAARKARDLTRRKTALESTSLPGKLADCT 413 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A + + N +I ++ Sbjct: 414 DKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDHVLGNAEIKAMI 473 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q H++L P Sbjct: 474 TAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGHVYLAQP 533 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++I + K YA+ +E I+ E + K + R+KGLGEM A QL ET MD K Sbjct: 534 PLYKIEKNKKVWYAYSDEELNNIMTEIGRDQNNK--VQRYKGLGEMDAEQLWETTMDPEK 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV ++ D S + + LMG K + R +FI+ A ++ ++ Sbjct: 592 RILLRVNMDDD--SASELDVTFTTLMGDKVEPRREFIETNAKYVKNLD 637 >gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843] gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843] Length = 640 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 374/651 (57%), Gaps = 19/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V D+GRGIP + HP KS LE +LT LHAGGKF + Y++SGGLHGVGIS Sbjct: 62 IKADGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + VTV R + + +Q++ RGIP++ L K GTR+ F PD +IF Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + L + AYL+ VK +S + P E + + GG+K Y+ + Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYR-----PEEPHIETYCYEGGIKEYVAYMCREK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + +I EK G V + + I + N I T +GGTH GL+ LTR Sbjct: 236 ETLHKDIIYVSGEKNGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ ++SV + EPEF GQTKTKL + + + V++ Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + + YL QNP A ++E ++ + R+ R+ V RK+ + LPGKLADCS Sbjct: 355 LVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 415 ERDPERSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLI 474 Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY ++++MTDADVDGAHI +LLLTFFY+ +LI+Q ++++ Sbjct: 475 TALGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIAC 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + + Q+ + EF + I RFKGLGEM+ QL +T M+ Sbjct: 535 PPLYKLERGKNHSYCYSDRELQQKIAEFPSNAN--YTIQRFKGLGEMMPQQLWDTTMNPE 592 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 RTL RVEI ++ LMG + R +FI+ S + D+ Sbjct: 593 TRTLKRVEIED----AAKAEELFTILMGDRVAPRREFIETHGSRLNLTDLD 639 >gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002] gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002] Length = 640 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 255/651 (39%), Positives = 370/651 (56%), Gaps = 19/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY I V Sbjct: 2 TSNYSAQQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGYCTEINVE 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV DNGRGIPV+ HP KS LE ++T LHAGGKF Y++SGGLHGVG+S Sbjct: 62 INADGSVTVTDNGRGIPVDVHP-STGKSALETVMTVLHAGGKFGAGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R T + Q++ RG+P L + ++ GT + F PD KIF + Sbjct: 121 VVNALSEWVEVTVWRDETTYKQRYERGVPQGELTEAPAPQHLSGTSVCFLPDAKIFTETT 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ V+ ++ + + +++ GG+K Y+ + Sbjct: 181 VFDYNTLAGRLRELAYLNAGVRIVFTDHRSEKQASNT-----YFYEGGIKEYVAYMNREK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 S + EI EK G + V + + + N I T +GGTH GL+ LTR Sbjct: 236 SPLHEEIIYVTGEKNGV-QLEVALQWCTDAYSDNLLGFANNIRTVDGGTHLEGLKSVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ ++SV + +PEF GQTKTKL + + + V++ Sbjct: 295 TMNTVARKRNKLKDNDSNLAGENIREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + Y N +LE I+ + R+ RE V RK+ + LPGKLADCS Sbjct: 355 FVGEVLTEYFEFNLNVVDAILEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TE+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILN+ KI N +I L+ Sbjct: 415 ERDPAKTEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 474 Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + ++ E LRY +V+IMTDADVDGAHI +LLLTFFY+ +L++Q ++++ Sbjct: 475 TALGLGIKGEEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIAC 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + + Q + + + K I RFKGLGEM+ QL +T M+ Sbjct: 535 PPLYKLERGKNHAYCYSDRELQDQISQLPDN--AKYNIQRFKGLGEMMPQQLWDTTMNPE 592 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RTL RVEI + LMG + R +FI+ A +DD+ Sbjct: 593 SRTLKRVEIED----AAEADRIFTVLMGDRVAPRREFIEMNAPKLNMDDLD 639 >gi|257470425|ref|ZP_05634516.1| DNA gyrase subunit B [Fusobacterium ulcerans ATCC 49185] gi|317064633|ref|ZP_07929118.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185] gi|313690309|gb|EFS27144.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185] Length = 635 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 380/649 (58%), Gaps = 20/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +LEGLE VR RPGMYIG T E+ LHHL E++DNA+DE +AGY + I V+ Sbjct: 2 SNNYQAENITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNAVDEALAGYCDKIIVN 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + V+DNGRGIPV HPK+ NKS LEI+LT LHAGGKF+N Y++SGGLHGVG+S Sbjct: 62 ILPDNIIEVIDNGRGIPVGIHPKY-NKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ VTV I+ QK++RGIP +++ + GT + F+ D +IF Sbjct: 121 VVNALSEWTDVTVKTDGKIWYQKYNRGIPEEDVKEIGVTTDH-GTSVRFKADHEIFETLI 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + AYL+ ++ S ++ K EEF F GG+ +L+ E Sbjct: 180 -YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKK-----EEFKFEGGIVDFLKEITEET 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALT 339 + E E TV+ A + + I S+ N I T EGGTH SG R ALT Sbjct: 234 EKLIPEPIYMSGEVDNV---TVDIAFLYTVNQAEVIYSFVNNINTHEGGTHVSGFRTALT 290 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I + ++ + +D+ I+SV + +P+F GQTKTKL + + V Sbjct: 291 RVINDVGKAQGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVS 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + L NP + ++E ++ + R +K RE+ + + + LPGKLADC Sbjct: 351 TLVGTNLKIVLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAKQ R+RS+QA+LPLRGKILNV AG K N ++ + Sbjct: 411 SSKNPDECEIYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+I+MTDADVDGAHI +LLLTF Y+ M DLI ++++ Sbjct: 471 ITAFGTSIGDSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++IT G + YA+ ++ ++I + F+ + K + R+KGLGEM QL +T M+ + Sbjct: 531 PPLYKITTGKQIRYAYTDKELKEITDVFEGDDR-KYTLQRYKGLGEMNPEQLWDTTMNPD 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ + +KLMG K D R +FI+E A ++ ++ Sbjct: 590 TRTLLQVTIDD----ARAADMLFDKLMGDKVDPRREFIEENAVYVKNLD 634 >gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 640 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 258/651 (39%), Positives = 373/651 (57%), Gaps = 19/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V D+GRGIP + HP KS LE +LT LHAGGKF + Y++SGGLHGVGIS Sbjct: 62 IKADGSVSVTDDGRGIPTDVHP-TTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + VTV R + + +Q++ RGIP++ L K GTR+ F PD +IF Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + L + AYL+ VK +S + P E + + GG+K Y+ + Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYR-----AEEPHIETYCYEGGIKEYVAYMCREK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + +I EK G V + + I + N I T +GGTH GL+ LTR Sbjct: 236 ETLHKDIIYVSGEKNGI-NIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ ++SV + EPEF GQTKTKL + + + V++ Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + + YL QNP A ++E ++ + R+ R+ V RK+ + LPGKLADCS Sbjct: 355 LVGETLNEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 415 ERDPEKSEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLI 474 Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY ++++MTDADVDGAHI +LLLTFFY+ +LI+Q ++++ Sbjct: 475 TALGLGIKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIAC 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + + Q+ + EF + I RFKGLGEM+ QL +T M+ Sbjct: 535 PPLYKLERGKNHSYCYSDRELQQKIAEFPSNAN--YTIQRFKGLGEMMPQQLWDTTMNPE 592 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RTL RVEI ++ LMG + R +FI+ + D+ Sbjct: 593 TRTLKRVEIED----AAKAEELFTILMGDRVAPRREFIETHGPRLNLTDLD 639 >gi|184154481|ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956] gi|227514123|ref|ZP_03944172.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|260662542|ref|ZP_05863437.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN] gi|183225825|dbj|BAG26341.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956] gi|227087494|gb|EEI22806.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|260553233|gb|EEX26176.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN] gi|299782689|gb|ADJ40687.1| DNA gyrase subunit B [Lactobacillus fermentum CECT 5716] Length = 649 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 381/656 (58%), Gaps = 20/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + YDAS I++L+GLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 8 ARKAELASEYDASQIQVLKGLEAVRKRPGMYIGSTTVQGLHHLVWEIVDNGIDEALAGFC 67 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ + + V DNGRGIPV+ K K LE + T LHAGGKF N Y++SGGL Sbjct: 68 DEINVIVEPDNSIIVTDNGRGIPVDIQ-KETGKPALETVFTVLHAGGKFGNGGYKVSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPD 212 HGVG SVVNALS EL V VARQ + F+RG + ++ + ++ GT + F PD Sbjct: 127 HGVGASVVNALSTELDVKVARQGKEYYMDFARGHVNTAMKVIKDDLPQSAHGTTVHFVPD 186 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + ++ L+ + A+L+ +K +E EK +E F++ GG++ Y Sbjct: 187 PEIFRETTVYNINTLIDRLRELAFLNKGLKITVEDRREGKEK-----QESFHYEGGIRHY 241 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ E L+ + E KG TVE ++ + ++ + ++ N I T EGGTHE Sbjct: 242 VEFLNEGHELLFDPPIYVEGEYKGI---TVEVSLQYTDDYRSNLLTFTNNIHTYEGGTHE 298 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +G + ALTR I Y + K +++ +D+ ++S+ P+F GQTKTKL + Sbjct: 299 TGFKTALTRVINDYGRKSGQIKGNVTLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLSNS 358 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 DA+ ++ + ++++NP A K++E + S+ R ++ RE +K+ + L Sbjct: 359 DARTATDHIFAETMTRFMMENPDVARKIVEKGMLASKARDAAKRAREVTRKKSGLEISNL 418 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 419 PGKLADNTSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLA 478 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M +IE+ Sbjct: 479 NEEIRSLFTALGTGFGDDFDVNKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIEK 538 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ QG Y ++E ++++ + K I R+KGLGEM A QL Sbjct: 539 GYVYIAQPPLYQVRQGKFVKYIENDEELERVVNSLQPS--PKPVIQRYKGLGEMDAEQLW 596 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R LLRV+++ K + LMGTK R +FI+E A+F++++ Sbjct: 597 ETTMDPANRHLLRVKLDD----AKAADEIFQMLMGTKVGPRREFIEENATFVENLD 648 >gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF] Length = 640 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 271/649 (41%), Positives = 390/649 (60%), Gaps = 22/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 NYD S I++LEGLE VR RPGMYIG TDE+ LHHL EV+DN++DE +AGY + I + Sbjct: 9 EQNYDESQIQVLEGLEAVRKRPGMYIGSTDERGLHHLVHEVVDNSIDEAMAGYCDDIRIK 68 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + V DNGRGIPV++HPK K TLE+I+T LHAGGKF N +Y++SGGLHGVGIS Sbjct: 69 LEPGNKVRVTDNGRGIPVKDHPKI-KKPTLEVIMTYLHAGGKFSNDSYKVSGGLHGVGIS 127 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVN LS + V V R ++ Q++ +G P + +++ + +KRGT I F PD +IF Sbjct: 128 VVNGLSKWIRVKVYRDGKVYQQEYEKGYPKTEIKEIGE-SDKRGTEIIFLPDEEIFETV- 185 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L Q A+L+ V S ++E ++E F + GG+K++++ EN+ Sbjct: 186 EFDYQVLRNRLQQLAFLNRGVSITISDERED-----EFKEEHFKYEGGIKSFVEYLNENK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339 + + + + E++G +E AI + + E+ Y N I T EGGTHESG +++LT Sbjct: 241 TTLFTPPVYIEGEQEG---CKLEVAIQYNDGYQEMIHSYANNINTHEGGTHESGFKISLT 297 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + YA + ++ +D+ I+SV + +P+F GQTKTKL + + +R VE Sbjct: 298 RTVNDYARRHNLLKNGDKNLTGEDIREGITAIISVKVEDPQFEGQTKTKLGNSEVRRIVE 357 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + YL +NP K++ I S R RK +E RK A+ LPGKLADC Sbjct: 358 GIVSEHLESYLEENPAVGKKIVNKAINASRAREAARKAKELTRRKNALEVTALPGKLADC 417 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + A +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N++I + Sbjct: 418 TTKDASKSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARFDKILANEEIKTI 477 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G ++ RY+++IIMTDADVDGAHI +LLLTFFY+ M LIE ++++ Sbjct: 478 ITAIGTGIGEEFDISKARYQRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQ 537 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+ + + K Y ++ +LEE K G I + R+KGLGEM +QL ET M+ Sbjct: 538 PPLYMVKKKGKHYYTFNDHELDNLLEEIGKEG---ISLQRYKGLGEMNPTQLWETTMNPE 594 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L V + + + LMG K R KFI+E A + ++ Sbjct: 595 SRTVLNVNLQDAI----EADKIFTVLMGEKVSPRRKFIEENARDVRNLD 639 >gi|257789784|ref|YP_003180390.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243] gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA] gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1] gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243] gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA] gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1] Length = 648 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 252/655 (38%), Positives = 376/655 (57%), Gaps = 18/655 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + D+YD S I++LEGLE VR RPGMYIG T + LHHL EV+DNA+DE +AGY + I+ Sbjct: 3 NKPDHYDGSDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGYCDEIK 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + ++V DNGRGIP++ HPK T+E++LT LHAGGKF Y++SGGLHGVG Sbjct: 63 VWIHQDNSISVDDNGRGIPIDKHPK-EKIPTVEVVLTILHAGGKFGGEGYKVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS + V V ++ + F G L + + GT ++F PDP+IF + Sbjct: 122 VSVVNALSSRVEVQVRKEGKEYFIGFDHGKTSEKLREVGPTKRGNGTTVSFWPDPEIFTE 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + A+L+ +K ++ + + G P E F + GG+ +++ E Sbjct: 182 TTVYDFDTLANRFREMAFLNKGLKIVLYDER-VTDADGKPRTEVFQYAGGIVDFVKFLNE 240 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ GT ++W+ ++ + ++ N I T EGGTH G + A+ Sbjct: 241 GKETLNKPIYFEAENDDGTVEVAMQWSTSYSTN--SVMAFANNINTHEGGTHLDGFKQAV 298 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I +YA ++ ++ DD I+SV + +P+F GQTKTKL + + + V Sbjct: 299 TRTINEYARSKGILKEKDSNLSGDDTREGCAAIVSVKLHDPQFEGQTKTKLGNTEIRPLV 358 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455 +NA+ YL +NP A +++ + + R RK RE+ R+ + LPGKLAD Sbjct: 359 QNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKLAD 418 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV AG + ++ I Sbjct: 419 CSSKTPENSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTISS 478 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ A+G + + RY ++IIMTDADVDGAHI LLLTFFY+ M +LI + ++++ Sbjct: 479 LITAIGTNIGDDFDADQSRYHRIIIMTDADVDGAHIRILLLTFFYRYMPELINRGYIYIA 538 Query: 576 SPPLFRITQG-----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PP+F + + Y +DE +L E+ K ++ R+KGLGEM QL E Sbjct: 539 QPPIFGLKKKNSRSPKIERYIYDESSLGSVLAEY--DDPNKFDVQRYKGLGEMDPDQLWE 596 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V I+ + + ++ LMG + + R +FIQ+ A + + Sbjct: 597 TTMEPATRTLLQVSIDD----AAEAERVVSDLMGDQVEPRKEFIQKHARDVRFLD 647 >gi|306841761|ref|ZP_07474447.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2] gi|306288166|gb|EFM59553.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2] Length = 680 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 417/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++ Sbjct: 39 DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 99 DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTR Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+ Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQAL Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+ Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R++QG K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTL Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV+++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679 >gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136] gi|189430362|gb|EDU99346.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136] Length = 654 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 265/660 (40%), Positives = 391/660 (59%), Gaps = 23/660 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 S+ +NY ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY I Sbjct: 7 PSSGNNYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTHI 66 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHGV Sbjct: 67 EVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGV 125 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS + V R I Q+++ G PL +++ + GTR TF PD IF Sbjct: 126 GVSCVNALSTHMTTNVFRNGKIHQQEYACGKPLYAVKEVG-TTDITGTRQTFWPDGSIFT 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + AYL+ + + +E E+ G ++E F+ G+K +++ Sbjct: 185 TT-EYKYNILQARMRELAYLNKGITITLTDKRE-KEEDGSFKQEIFHSEEGVKEFVRFLN 242 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + ++ TEK+G +E AI + + SY N I T EGGTHE+G R Sbjct: 243 STNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFRT 299 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR +KKYAE ++ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 300 ALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVSG 359 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V A+ + +YL ++P EA +++ V+ + R+ RK RE ++ + + LPGKL Sbjct: 360 AVNQAVGEALTYYLEEHPKEAKTIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGKL 419 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + ++ Sbjct: 420 ADCSSRTAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDEV 479 Query: 514 MDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +++QALG R + + LRY KVIIMTDADVDG+HI +L++T FY+ M ++ Sbjct: 480 NNIIQALGVRFGVDGTEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPEV 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I+ HL++ +PPL++ ++G S Y + +E +Q ++++ + I R+KGLGEM Sbjct: 540 IQGGHLYIANPPLYKCSKGKISEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNPE 599 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET M+ R L +V I + + + LMG R +FI++ A++ ++ Sbjct: 600 QLWETTMNPETRILKQVSIE----NAAEADYIFSMLMGDDVAPRREFIEKHATYA-NIDA 654 >gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] Length = 642 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 261/649 (40%), Positives = 380/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +YD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I V Sbjct: 10 EQSYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCSEINVI 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVDNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEKDNSITVVDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V R + QKF RG+P + LE + + GT I F+PD +IF + Sbjct: 129 VVNALSTVLEVFVHRDGQKYYQKFERGVPSADLEVIGET-DHTGTTIHFKPDSEIFTETL 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K E+ + GG+K+Y++ + Sbjct: 188 EYDYETLANRIRELAFLNRGLKITIEDKREENKK------SEYMYEGGIKSYVEHLNRTK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ E E++G TVE +I + + I S+ N I T EGGTHESG + ALT Sbjct: 242 EVLHEEPIYIDGEREGI---TVEVSIQYNDGFTSNIYSFANNIHTYEGGTHESGFKTALT 298 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ +D+ I+SV +P+F GQTKTKL + + + + Sbjct: 299 RVINDYARKNGVFKESDANLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVRAATD 358 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + ++++NP A K++E ++ ++ + RK+A+ LPGKLADC Sbjct: 359 TIFSEALEKFMLENPTVARKIVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADC 418 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N ++ + Sbjct: 419 SSKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAI 478 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + RY K++IMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 479 ITAIGTGIGEDFDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 538 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I QG K YA+++ KIL E K I R+KGLGEM QL ET M+ Sbjct: 539 PPLYKIQQGKKIEYAYNDRELDKILGELPSQPKPG--IQRYKGLGEMNPGQLWETTMNPE 596 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + ++ LMG K + R FI+E A ++ ++ Sbjct: 597 SRTLLQVNLEDAI----EADETFEILMGDKVEPRRNFIEENAVYVKNLD 641 >gi|306845925|ref|ZP_07478492.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1] gi|306273560|gb|EFM55405.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1] Length = 680 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 416/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++ Sbjct: 39 DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 99 DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTR Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+ Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQAL Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR YRE++LRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+ Sbjct: 518 GCGTRKNYREDNLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R++QG K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTL Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV+++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679 >gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 653 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 270/664 (40%), Positives = 399/664 (60%), Gaps = 21/664 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S N++ + Y ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +A Sbjct: 2 SDETTNKALNKEYGASSIQVLEGLEAVRKRPAMYIGDVGEKGLHHLVYEVVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GY I V+++ + +TV D+GRGIPV+ H K KS LE+++T LHAGGKFD +Y++S Sbjct: 62 GYCKNISVTINKDNSVTVKDDGRGIPVDIHEK-EKKSALEVVMTVLHAGGKFDKGSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+S VNALSD L V R + Q++SRG+PL +++ ++ GT ITF P Sbjct: 121 GGLHGVGVSCVNALSDYLKAEVCRNGKRYVQEYSRGVPLGEVKEVG-TSSETGTTITFHP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF D + + L+K + A+L+ ++ + + E+ G + EEFY GL+ Sbjct: 180 DKDIFIDIH-YKYSILVKRMRELAFLNAGIRLTITDLRS-EEEGGANKTEEFYSEQGLRE 237 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTH 330 +++ R + +++ T+K GT VE A+ + E Y N I T EGGTH Sbjct: 238 FVKYIDSTREPLINDVIYIDTDKYGTP---VEVAMMYNTSYTENLHSYVNNINTIEGGTH 294 Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR +KKYA+ + K + I SDD ++SV + EP+F GQTKTKL Sbjct: 295 VTGFRTALTRTLKKYADDNKLLEKTKVEISSDDFREGITAVISVKVAEPQFEGQTKTKLG 354 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447 + + + V+ A+ + + +L ++P EA ++E +I + R RK RE+ ++ + + Sbjct: 355 NDEVKGMVDRAVGEALNVFLEEHPKEAKTIVEKIILAATARNAARKARELVQRKSPLSGG 414 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS A E+F+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A K Sbjct: 415 GLPGKLADCSSRDASLCEIFLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAMRHKA 474 Query: 508 RNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++++ ++ ALG ++ E LRY KV+IMTDADVDG+HIA+L+LTFF++ Sbjct: 475 FESEEVRNIYTALGVTIGTEEDSQALNIEKLRYHKVVIMTDADVDGSHIATLILTFFFRY 534 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M +LIEQ H+++ +PPL+ +G Y EE + + ++++ + I R+KGLGE Sbjct: 535 MKELIEQGHVYIATPPLYLCKKGKVQEYCWTEEQRLRFIQQYGDGKESGITQQRYKGLGE 594 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET M+ RTL ++ I + + + LMG R +FI+E A++ Sbjct: 595 MNPEQLWETTMNPENRTLRQITIE----NAAEADYVFSMLMGDDVAPRRQFIEENATYA- 649 Query: 683 DVGT 686 ++ Sbjct: 650 NIDA 653 >gi|148558666|ref|YP_001257579.1| DNA topoisomerase IV subunit B [Brucella ovis ATCC 25840] gi|189022806|ref|YP_001932547.1| DNA topoisomerase IV subunit B [Brucella abortus S19] gi|148369951|gb|ABQ62823.1| DNA topoisomerase IV, B subunit [Brucella ovis ATCC 25840] gi|189021380|gb|ACD74101.1| DNA topoisomerase IV subunit B [Brucella abortus S19] gi|326410748|gb|ADZ67812.1| DNA topoisomerase IV subunit B [Brucella melitensis M28] gi|326554041|gb|ADZ88680.1| DNA topoisomerase IV subunit B [Brucella melitensis M5-90] Length = 680 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 417/645 (64%), Positives = 518/645 (80%), Gaps = 5/645 (0%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++ Sbjct: 39 DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 99 DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD RL +M +SKAYL G V+ W+CD + + K PEK F+FPGGLK YL+ L Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPEKAVFHFPGGLKDYLEASLGKE 278 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTR Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+ Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRLVENAI 397 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQAL Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+ Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R++QG K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTL Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV+++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679 >gi|148241191|ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp. RCC307] gi|147849501|emb|CAK26995.1| DNA gyrase subunit B [Synechococcus sp. RCC307] Length = 657 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 262/663 (39%), Positives = 385/663 (58%), Gaps = 15/663 (2%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 ++ ++ Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE Sbjct: 2 SEATRPSSSQVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+ N I+V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF + Y+ Sbjct: 62 LAGHCNTIDVCLRADGSCSVADNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGSGGYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS+ + VTV RQ+ + Q+F RG P+ L + + + GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEWVEVTVHRQDKVHRQRFERGAPIGSLASEAGEKGRTGTSVCF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGG 268 +PD +IF FD A L + AYL+G VK + ++ E A + G P +E +++ GG Sbjct: 181 KPDIEIFTGGISFDYATLSGRLRELAYLNGGVKIVFRDERPEAAGEDGQPHEEIYFYEGG 240 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328 ++ Y+ + + +I +EK G + + I + N I T +GG Sbjct: 241 IREYVNYMNAEKDPLHPDIIYVNSEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGG 299 Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH GL+ LTR + +A ++ ++ +++ +LSV + +PEF GQTKTK Sbjct: 300 THIEGLKTVLTRTLNTFARKRGKRKDSDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTK 359 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + + + V+ + + YL +P +LE I+ R+ RE V RK+ + Sbjct: 360 LGNTEVRGIVDTVVGEALSEYLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLE 419 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS +E++IVEGDSAGGSAKQ R+R NQA+LPLRGKILN+ Sbjct: 420 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDA 479 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 KI N +I L+ ALG + + + +LRY +++IMTDADVDGAHI +L+LTFFY+ Sbjct: 480 KIYKNTEIQALITALGLGIKGEEFDVSNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQR 539 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L+E ++++ PPL+++ +G Y ++E+ +K L+ F + K I RFKGLGEM+ Sbjct: 540 ELVEGGYIYIACPPLYKVERGKNHTYCYNEQDLKKTLDGFGE--KANYTIQRFKGLGEMM 597 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-- 682 QL ET MD RT+ RVEI LMG K R +FI+ ++ ++ Sbjct: 598 PQQLWETTMDPTTRTMKRVEIED----AAQADRIFTILMGDKVAPRREFIETHSAELNLA 653 Query: 683 DVG 685 D+ Sbjct: 654 DLD 656 >gi|169830224|ref|YP_001716206.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637068|gb|ACA58574.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C] Length = 635 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 382/645 (59%), Gaps = 21/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG+ + IEV + Sbjct: 8 YRAEDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLIFEVVDNSIDEALAGFCDYIEVVIHA 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV DNGRGIPV+ HP+ + LE++LT LHAGGKF + Y+ISGGLHGVG+SVVN Sbjct: 68 DNSVTVSDNGRGIPVDIHPQV-GRPALEVVLTRLHAGGKFGGTQYKISGGLHGVGVSVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + V V R+ + Q+F RG+ LE ++ ++ GTR+TF PDP IF + F Sbjct: 127 ALSRRMEVEVKREGYRYRQEFERGLATGELELLDEA-DETGTRVTFIPDPDIFEE-VEFQ 184 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 + K + ++L+ V ++ +K + + GG++ +++ ++ ++ Sbjct: 185 YDVVAKRLRELSFLNAGVTLVLRDERTGRDKV-------YQYAGGIRDFVRHLNLHKEVL 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343 ++ + K G V + I SY NTI T +GGTHE+G + ALTR I Sbjct: 238 PADPIYVEDHKNGVW-VEVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRTIN 296 Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403 YA + S+ +D+ +++V + EP+F GQTKTKL + + + V+ + Sbjct: 297 DYARKYNLVKNDSLSGEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWVVSQR 356 Query: 404 FDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462 YL ++P EA ++++ V+ RR + RK+ + LPGKLADCS+ Sbjct: 357 LAAYLEEHPTEARQIVQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSRRDPQ 416 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +EL++VEGDSAGGSAKQ R+R QA+LPLRGKILN A +K+ N++I L+ A+G Sbjct: 417 HSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALITAIGT 476 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + RY +++IMTDADVDG+HI +LLLTFFY+ M LI+ ++++ PPL+R+ Sbjct: 477 GFGEDFDLAKARYHRIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQPPLYRV 536 Query: 583 T-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + +G K+ VY + ++ ++ F+++G+ I R+KGLGEM QL +T +D RT+ Sbjct: 537 SGKGRKNGVYLYSDQQLEQF---FRENGRQNWSIQRYKGLGEMNPEQLWDTTLDPENRTM 593 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V + L + ++ LMG + + R +FIQ+ A + ++ Sbjct: 594 LQVTLEDAL----AAEQLLSTLMGEQVEPRREFIQQHAREVRNLD 634 >gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855] gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA] gi|237724917|ref|ZP_04555398.1| DNA gyrase B subunit [Bacteroides sp. D4] gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA] gi|212664587|gb|EEB25159.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855] gi|229436655|gb|EEO46732.1| DNA gyrase B subunit [Bacteroides dorei 5_1_36/D4] gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA] gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA] Length = 654 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 266/662 (40%), Positives = 392/662 (59%), Gaps = 23/662 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +NY AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++S G PL +++ + GT+ TF PD I Sbjct: 124 GVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWPDDTI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L + AYL+ + + + I E+ G +KE F+ G+K +++ Sbjct: 183 FTVT-EYKFDILQARMRELAYLNKGITISLTD-RRIKEEDGSFKKEIFHSDEGVKEFVRF 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N + ++ TEK T +E AI + + SY N I T EGGTHE+G Sbjct: 241 LNRNNEALIDDVIYLNTEKNNTP---IECAIMYNTGYRESLHSYVNNINTIEGGTHEAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE T+ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 298 RSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V A+ + +YL ++P EA ++++ VI + R+ RK RE ++ + + LPG Sbjct: 358 SGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A K + Sbjct: 418 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESD 477 Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++ +++ ALG R + + LRY KV+IMTDADVDG+HI +L++T FY+ M Sbjct: 478 EVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMP 537 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++IE HL++ +PPL++ ++G S Y + EE +Q ++++ + I R+KGLGEM Sbjct: 538 EIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMN 597 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET M+ R L +V I+ + + + LMG R +FI++ A++ ++ Sbjct: 598 PEQLWETTMNPETRILKQVTID----NAANVDYIFSMLMGDDVAPRREFIEKNATYA-NI 652 Query: 685 GT 686 Sbjct: 653 DA 654 >gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580] gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580] Length = 638 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 377/650 (58%), Gaps = 24/650 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I +L+GL+ VR RPGMYIG T LHHL EV+DN +DE +AGY + I V L+ Sbjct: 5 SYSAENITVLKGLDAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGYCDTILVVLE 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N + V DNGRGIPV+ HP+ S LE++LT LHAGGKFD +Y++SGGLHGVG+SVV Sbjct: 65 KNDTVRVEDNGRGIPVDIHPE-EGVSALELVLTRLHAGGKFDKGSYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R + QKF+ G PL P+ K+ + + RGT I + DP IF + + Sbjct: 124 NALSTSMEAIVCRDGFEYVQKFALGEPLGPVTKRGETQK-RGTTIRWTADPSIFTETTTY 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + A+L+ +K ++ P++ F F GGL +++ E++ + Sbjct: 183 NFDVLAVRLRELAFLNNTIKITLRDER-----LSTPKEVTFAFDGGLSHFVRYLNESKQV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E + EK VE A+ + + I S+ N I T EGGTH G + ALTR Sbjct: 238 LPKEPIYFEGEKNDV---VVEIAMQYNDGYKENILSFVNDINTREGGTHLEGFKTALTRV 294 Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + ++ + + ++ ++ +D+ +LSV + EP+F GQTKTKL + + + V Sbjct: 295 MNEFLKKNAKLSKKMEKEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSEVRSIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + + + + QNPIE K+LE + + R+ RK +E RK+ + LPGKLAD Sbjct: 355 DTFINEKLTLFFEQNPIEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK+ R+ QA+LPL GK+LNV +K+ NN+++ Sbjct: 415 CSSKDPEKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLNNEKLQP 474 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ LG + + +RY K+IIM DADVDG+HI +LLLTFF++ M +LIE ++L Sbjct: 475 IIATLGTGIGEDFNLDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGFVYLA 534 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I+ K Y +D+ + IL E + + R+KGLGEM +QL ET MD Sbjct: 535 MPPLYKISYNKKEWYVYDDSERDSILNEIGRS--VSPAVQRYKGLGEMDGTQLWETTMDP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R ++RV ++ + + + LMG + + R KFI+E A + ++ Sbjct: 593 ARRKMMRVTLSDAV----EADRIFSTLMGEEVEPRRKFIEENAVYA-NLD 637 >gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482] gi|254880798|ref|ZP_05253508.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA] gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510] gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A] gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482] gi|254833591|gb|EET13900.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA] gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510] gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A] Length = 654 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 266/662 (40%), Positives = 393/662 (59%), Gaps = 23/662 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +NY AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++S G PL +++ + GT+ TF PD I Sbjct: 124 GVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWPDDTI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L + AYL+ + + + I E+ G +KE F+ G+K +++ Sbjct: 183 FTVT-EYKFDILQARMRELAYLNKGITISLTD-RRIKEEDGSFKKEIFHSDEGVKEFVRF 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N + +++ TEK T +E AI + + SY N I T EGGTHE+G Sbjct: 241 LNRNNEALINDVIYLNTEKNNTP---IECAIMYNTGYRESLHSYVNNINTIEGGTHEAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE T+ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 298 RSALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V A+ + +YL ++P EA ++++ VI + R+ RK RE ++ + + LPG Sbjct: 358 SGAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A K + Sbjct: 418 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESD 477 Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++ +++ ALG R + + LRY KV+IMTDADVDG+HI +L++T FY+ M Sbjct: 478 EVNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMP 537 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++IE HL++ +PPL++ ++G S Y + EE +Q ++++ + I R+KGLGEM Sbjct: 538 EIIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMN 597 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET M+ R L +V I+ + + + LMG R +FI++ A++ ++ Sbjct: 598 PEQLWETTMNPETRILKQVTID----NAANVDYIFSMLMGDDVAPRREFIEKNATYA-NI 652 Query: 685 GT 686 Sbjct: 653 DA 654 >gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] Length = 632 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKMVEKGTMAARARVAAKKARELTRRKRALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159] gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159] Length = 636 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 274/654 (41%), Positives = 394/654 (60%), Gaps = 26/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +++ YDAS+I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + I Sbjct: 2 TNSTTRYDASAIQVLEGLEAVRRRPGMYIGSTDIRGLHHLIYEIVDNSVDEALAGYCDRI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV++ +G + V D+GRGIPV+ HPK KS LE+I+TTLHAGGKF Y++SGGLHGV Sbjct: 62 EVTIHRDGSVRVWDDGRGIPVDIHPKV-GKSALEVIMTTLHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS+ L VTV R I+ Q++ RG+P++P+E + + GT F PD IF Sbjct: 121 GASVVNALSEWLEVTVRRDGKIYHQRYERGVPVTPVETIGETTPDDHGTETVFLPDRLIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + LL+ + AYL+ + + ++ + FYF GG+ ++++ Sbjct: 181 RS-LDYQSDVLLQRFREVAYLTSGLTIHFVDERTDLD-------MTFYFEGGIVSFVRHL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + ++ + F K E+ G VE AI + + ++ N I T +GGTH +G + Sbjct: 233 NRTKEVLQPQPFYVKREQNG---CLVEVAIQYTDGYAESTHAFANNINTIDGGTHVTGFK 289 Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I +YA + ++ +D+ I+SV + EP+F GQTKTKL + + Sbjct: 290 AALTRAINEYARRHGLLKENDPNLSGEDVREGLTAIISVMLPEPQFEGQTKTKLGNAEVA 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V++ + + F YL ++P A +++E + + R RK RE V RK A+ LPGK Sbjct: 350 GIVQSIVYESFTSYLEEHPAIARRIIEKCLTAARAREAARKARELVQRKGALDTFSLPGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC++ EL+IVEGDSAGGSAKQ R+R QAVLPLRGKILNV A +++ +N++ Sbjct: 410 LADCTERDPAKAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLHNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ ALG QY LRY +VI+MTDADVDGAHI +LLLTFF++ + LI HL Sbjct: 470 IRALITALGTGIGDQYDRSKLRYHRVILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHL 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKET 631 ++ PPL+R+ G + Y + +E + IL G GK +I R+KGLGEM QL ET Sbjct: 530 YIAQPPLYRLQSGKEVHYVYSDEERDAILNR----GDGKTWDIQRYKGLGEMNPEQLWET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +RTLL+V I + ++ N LMG+ R +FIQ A + ++ Sbjct: 586 TMDPARRTLLQVTIEDAVR----ADETFNMLMGSAVPPRKRFIQAHAREVRNLD 635 >gi|325299173|ref|YP_004259090.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170] gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170] Length = 654 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 263/661 (39%), Positives = 389/661 (58%), Gaps = 23/661 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY Sbjct: 6 TPKGGNTYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHG Sbjct: 66 IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS + V R I+ Q+++ G PL P+++ + GTR TF PD IF Sbjct: 125 VGVSCVNALSTHMITNVFRNGKIYQQEYACGKPLYPVKEVG-TTDITGTRQTFWPDASIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + L + AYL+ + + +E E+ G ++E F+ G+K +++ Sbjct: 184 TVT-EYKYNILQARMRELAYLNKGITITLTDKRE-KEEDGSYKQEVFHSEEGVKEFVRFL 241 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + + ++ TEK+G +E AI + + SY N I T EGGTHE+G R Sbjct: 242 NSTNTPLIDDVIYLNTEKQGVP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR +KKYAE ++ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 299 TALTRVLKKYAEDSKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452 V A+ + +YL ++P EA +++ V+ + R+ RK RE ++ + + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKLIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + + Sbjct: 419 LADCSSRTPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 513 IMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + +++QALG R + + LRY KVIIMTDADVDG+HI +L++T FY+ M + Sbjct: 479 VNNIIQALGVRFGVDDSEDSKKANIDKLRYNKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+ HL++ +PPL++ ++G S Y + +E +Q ++++ + I R+KGLGEM Sbjct: 539 VIQGGHLYIANPPLYKCSKGKVSEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V I + + + LMG R +FI++ A++ ++ Sbjct: 599 EQLWETTMNPETRILKQVSIE----NAAEADYIFSMLMGDDVAPRREFIEKHATYA-NID 653 Query: 686 T 686 Sbjct: 654 A 654 >gi|319404202|emb|CBI77795.1| topoisomerase protein [Bartonella rochalimae ATCC BAA-1498] Length = 692 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 428/695 (61%), Positives = 532/695 (76%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFSTLPP---------QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51 M+D++ DLFS L +++ S +++ + A N D Y+A SIR+ Sbjct: 1 MSDNNKDLFSILNNAQSRIEAKEKNKPISVTPQETSRSISTSASKNDIKKDEYNALSIRV 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD G+LTV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDEQGYLTVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR ++ Q+FSRGIP S LE V N+RGTR+ F PD KIFG+K F+ ++ KM Sbjct: 181 EVARDRKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKIFGEKVAFEPEKIYKMA 240 Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 SKAYL G VK W+CD ++ E IPEK F+FP GLK YL + L+N ++S++F+G Sbjct: 241 LSKAYLFGGVKIRWNCDSKMLEGIKNIPEKAVFHFPDGLKDYLLSSLKNEYRVTSKVFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KT++ G H G+VEWAIAW + + SYCNTI T EGGTHE+GLR AL R +K YAEL Sbjct: 301 KTKQHGAH-GSVEWAIAWYGGDACVHSYCNTIPTGEGGTHEAGLRQALLRSLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKR+ I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L Sbjct: 360 NKRSAIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL+W+IER+EER++RR+ +E+NRKTA+RKLRLPGKLADCSQN A G ELFIVE Sbjct: 420 SPQEATKLLDWIIERAEERVKRRQDKEINRKTAVRKLRLPGKLADCSQNSAVGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR NQA+LPLRGKILNVASA EK+ +Q I DL+ ALGC RS+YRE Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSASQAINDLILALGCGIRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K Y Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L+ + GK KIEI RFKGLGEM A QLKET MD KRTLLR+ I D Sbjct: 600 ARDDNHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMDPKKRTLLRIAI--DAV 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +++T++++ LMGTK + RF+FIQE ++F D++ Sbjct: 657 DMQETKNTVESLMGTKPEARFRFIQENSTFADNLD 691 >gi|306839001|ref|ZP_07471822.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653] gi|306405907|gb|EFM62165.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653] Length = 680 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 416/645 (64%), Positives = 517/645 (80%), Gaps = 5/645 (0%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y+ASSIR+LEGLEPVR+RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN IEV++ Sbjct: 39 DDYNASSIRVLEGLEPVRLRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIEVTV 98 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D GF+TV DNGRGIPV+ HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 99 DKEGFVTVSDNGRGIPVDEHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 158 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGIP LE+ +V N+RGTR+ F PDP+IFG A Sbjct: 159 VNALSDVLEVEVARNRRLYRQCFSRGIPQGGLEELGEVHNRRGTRVRFHPDPEIFGKNAH 218 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD RL +M +SKAYL G V+ W+CD + + K P K F+FPGGLK YL+ L Sbjct: 219 FDPHRLYRMARSKAYLFGGVEIRWNCDPSLLDPKKETPGKAVFHFPGGLKDYLEASLGKE 278 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E+F G+TEK+G H G VEWA+AW + + SYCNTI T +GGTHE+GLR+ALTR Sbjct: 279 HQVTREVFAGRTEKQGGH-GAVEWAVAWFGGDGFVHSYCNTIPTGDGGTHEAGLRIALTR 337 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELT NKRA I +DD+M+SA G+LSVFIREPEF GQTK KL +++AQR VENA+ Sbjct: 338 GLKAYAELTNNKRASIITTDDVMVSAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENAI 397 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L +P EA++LLEWVI+R++ERLRRR+++E RK+A RKLRLPGKLADC+QN Sbjct: 398 RDPFDHWLAASPQEASRLLEWVIDRADERLRRRQEKETVRKSATRKLRLPGKLADCTQNA 457 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQAL Sbjct: 458 AAGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLTANQQIADLVQAL 517 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR YRE+DLRY++VI+MTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+ Sbjct: 518 GCGTRKNYREDDLRYDRVIVMTDADVDGAHIASLLITFFYQEMPELIRNGHLYLAVPPLY 577 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R++QG K+ YA D+ HK+++L G+GKIEI RFKGLGEM A QLKET MD KRTL Sbjct: 578 RLSQGGKTAYARDDAHKEELLRTVF-TGRGKIEIGRFKGLGEMRADQLKETTMDPAKRTL 636 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV+++++ +T+++++ LMGTK + RF+FIQ+RA+F++++ Sbjct: 637 LRVQVDEEYGD--ETRNTVDDLMGTKPEARFRFIQDRAAFVEELD 679 >gi|220930856|ref|YP_002507764.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] Length = 642 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 262/652 (40%), Positives = 381/652 (58%), Gaps = 23/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY+A I++LEGLE VR RPGMYIG T LHHL EV+DN++DE + GY +LIE Sbjct: 8 NNKGNYEAEHIQVLEGLEAVRKRPGMYIGSTGMDGLHHLVYEVVDNSIDEAMQGYCDLIE 67 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +TV DNGRGIPV+ HPK K +E++LT LHAGGKF Y++SGGLHGVG Sbjct: 68 VIIKPGNIITVKDNGRGIPVDPHPKL-KKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVG 126 Query: 159 ISVVNALSDELHVT-VARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 +SVVNALS L V R ++ QK++RGIP+ L+ + GT I+F+PD +IF Sbjct: 127 VSVVNALSKWLEVEVCWRDGKVYHQKYNRGIPVYDLKVIGECSG-TGTTISFKPDEEIFE 185 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D F L + + A+L+ V+ ++E ++E+ F GGL ++++ Sbjct: 186 DVN-FKYKVLAQRLKELAFLNKGVRIILRDEREE-----EARQDEYCFEGGLVSFVKYLN 239 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + E F + + + VE AI + + I ++ N I T EGGTH SG + Sbjct: 240 KNKNPLFDEPFYLEEKDEN---REVEIAIQYNDGYVDSIFTFANNINTREGGTHLSGFKS 296 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + YA + ++ +D+ I+SV + +P+F GQTKTKL + + + Sbjct: 297 ALTRTVNDYARSKGILKENDENLTGEDIREGITAIISVRLTDPQFEGQTKTKLGNSEIRG 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V++AL +L +NP ++ + + ++ + RK A+ LPGKL Sbjct: 357 FVDSALSSNLRTFLEENPKIGKIIVEKARSAARARKAAKKARELTRRKGALSNTALPGKL 416 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS TE++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A KI NN++I Sbjct: 417 ADCSSRDTENTEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEI 476 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE ++ Sbjct: 477 RALITAIGTGIGDEFDINKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIY 536 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ +G + Y +++ QK+L + G+ KI + R+KGLGEM QL ET M Sbjct: 537 IAQPPLYKVKKGRREEYVYNDRGLQKLLNDI---GRDKITLQRYKGLGEMNPDQLWETTM 593 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R +L+V+I + ++ LMG K R +FIQE A + ++ Sbjct: 594 NPENRIILKVKIEDAVV----ADETFTTLMGDKVQPRREFIQEHAHEVQNLD 641 >gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135] gi|198272789|gb|EDY97058.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135] Length = 654 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 265/661 (40%), Positives = 397/661 (60%), Gaps = 23/661 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q++ NY ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY Sbjct: 6 TQNSGSNYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHG Sbjct: 66 IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS + V R I+ Q++ G PL +++ + GTR TF PD IF Sbjct: 125 VGVSCVNALSTHMTTNVFRNGKIYQQEYECGKPLYAVKEVG-TTDITGTRQTFWPDGSIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + L + AYL+ + + + + E+ G ++E+F+ G+K +++ Sbjct: 184 TVT-EYKYSILQARMRELAYLNKGITITLTDKR-VKEEDGSYKQEKFHSEEGVKEFVRFL 241 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N + + ++ TEK+G +E AI + + SY N I T EGGTHE+G R Sbjct: 242 NSNNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR +KKYAE ++ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 299 MALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVS 358 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452 V A+ + +YL ++P EA +++ V+ + R+ RK RE ++ + + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKIIVDKVVLAATARVAARKARESVQRKSPMGGGGLPGK 418 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +A ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + + Sbjct: 419 LADCSSRVAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 513 IMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + +++QALG R + + LRY KVIIMTDADVDG+HI +L++T FY+ M + Sbjct: 479 VNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+ HL++ +PPL++ ++G S Y + +E +Q ++++ + + I R+KGLGEM Sbjct: 539 VIQGGHLYIATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQRYKGLGEMNP 598 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V I + + + LMG R +FI++ A++ ++ Sbjct: 599 EQLWETTMNPETRILKQVNIE----NAAEADYIFSMLMGDDVGPRREFIEKNATYA-NID 653 Query: 686 T 686 Sbjct: 654 A 654 >gi|118589107|ref|ZP_01546514.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Stappia aggregata IAM 12614] gi|118438436|gb|EAV45070.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Stappia aggregata IAM 12614] Length = 681 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 402/686 (58%), Positives = 512/686 (74%), Gaps = 7/686 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ + + ++ + + P A + SD+Y A+ I +LEGLEPVR Sbjct: 1 MSAKDDLFAGNAAVAAPMTRDEPAPAPQKPRPVAP--VAVSDDYSAADIEVLEGLEPVRR 58 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A I+VSL +G+LT+ DNGRGIPV+ Sbjct: 59 RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVSLSADGYLTITDNGRGIPVDP 118 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKF +KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALS+EL V VAR ++ Sbjct: 119 HPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSEELIVEVARSRKLY 178 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q F RG PLE +N+RGT+++F+PD +IFG A F ARLLKM +SKAYL G Sbjct: 179 RQIFRRGHAQGPLELVGDTQNRRGTQVSFKPDDQIFGKGAKFIPARLLKMARSKAYLFGG 238 Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C E ++EK P + F+FPGGL+ +L +L + ++F G+T+ G H Sbjct: 239 VEIRWHCAPELLSEKDETPSEAVFHFPGGLRDFLNERLSKERRVVDDVFFGRTDNAGKH- 297 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 G+VEWA++W + + SYCNT+ T EGGTHE+G R AL RG+K Y ELT NK+A I Sbjct: 298 GSVEWAVSWYAGDGFVNSYCNTVPTPEGGTHEAGFRYALLRGLKAYGELTNNKKASIITG 357 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+M SA G+LSVFIREPEF GQTK KL + +A R E A+RD FDH+L +P +A KLL Sbjct: 358 DDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRITETAVRDAFDHWLTASPNQANKLL 417 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 EWVI+R++ERLRRR++++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSAGGSAK Sbjct: 418 EWVIDRADERLRRRQEKDVARKTAVRKLRLPGKLADCSANQSDGTELFIVEGDSAGGSAK 477 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNRSNQAVLPLRGKILNVA+AG +K+ NQQ+ DL+QALGC TRSQYRE DLRYEK++ Sbjct: 478 QARNRSNQAVLPLRGKILNVANAGRDKLVANQQLADLIQALGCGTRSQYRESDLRYEKIV 537 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+EM +LI HLFL PPL+R++QG K++YA D+ HK + Sbjct: 538 IMTDADVDGAHIASLLITFFYREMPELIRGGHLFLAVPPLYRLSQGGKTLYARDDAHKDE 597 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++E K GK K+EI RFKGLGEML +QLKET MD +KRT+L+V + +D ++ DT D++ Sbjct: 598 LMETVFK-GKSKVEIGRFKGLGEMLPAQLKETTMDPSKRTMLKVVVEED--AVTDTNDTV 654 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 +LMG K + RF+FIQ+ A F +D+ Sbjct: 655 ERLMGNKPEARFRFIQDNAEFAEDLD 680 >gi|220932011|ref|YP_002508919.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] Length = 637 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 253/646 (39%), Positives = 377/646 (58%), Gaps = 22/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I IL+GLE VR RPGMYIG T + LHHL EV+DN++DE +AGY + IEV+++ Sbjct: 9 YGAEQIEILKGLEAVRKRPGMYIGSTGIRGLHHLVWEVVDNSIDEYLAGYGDKIEVTINE 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D GRGIP E HP+ ++++TTLHAGGKF+N++Y++SGGLHGVGISVVN Sbjct: 69 DNSITVEDWGRGIPAEEHPE-TGLPAAQVVMTTLHAGGKFNNNSYKVSGGLHGVGISVVN 127 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L +T + Q++ RG P + +K N+ GT I+F+PDP+IF F Sbjct: 128 ALSEWLELTTYWNGNEYYQRYERGYPKTKFQKLG-TSNRNGTIISFKPDPEIFDVT-EFK 185 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L Q A+L+ + + K E F + GG+K +++ +NR +I Sbjct: 186 YETLAHRLQESAFLNKELSLILIDKRSDKTKK-----EVFQYDGGIKAFVEYLNKNRQVI 240 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + +I + E +E A+ + E I SY N I T +GG H +G + ALT+ I Sbjct: 241 NEDIIYTEKE---NGDYYIEVALQYNEGYNERIFSYANNINTVDGGYHLTGFKTALTKAI 297 Query: 343 KKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +A+ + +D+ +++V + P+F GQTK+KL + + + VE+ + Sbjct: 298 NNFAKQNNLLKQSDPTLTGNDVREGLTAVVNVKLPNPQFEGQTKSKLGNSEIRSIVESNI 357 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 D YL NP K+++ I+ R +K RE RK A+ LPGKLADC+ Sbjct: 358 YDYLSLYLDSNPEVGKKIVDKAIQAIRARQASKKARELTRRKNALNSHSLPGKLADCASR 417 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +ELF+VEGDSAGGSAKQ RNR QA+LPL+GKI+NV A +KI +N +I ++ A Sbjct: 418 KPEKSELFLVEGDSAGGSAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISA 477 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG ++ + LRY K+IIMTDADVDGAHIA+LLLT FY+ M +LI++ ++++ PPL Sbjct: 478 LGTGIGQEFNIDKLRYHKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPL 537 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 ++++ Y + ++ + + E + I R+KGLGEM QL ET M+ R Sbjct: 538 YKVSWKKNIRYLYTDKELESLKRELE---NKSYSIQRYKGLGEMNPRQLWETTMNPETRK 594 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLR+EI+ ++ + + +LMG+ A R +FI A +D++ Sbjct: 595 LLRIEIDDEI----EADEIFTRLMGSNASLRREFIISNADMVDELD 636 >gi|291457885|ref|ZP_06597275.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419429|gb|EFE93148.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 656 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 260/652 (39%), Positives = 374/652 (57%), Gaps = 20/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S+NY A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 19 KGSENYGADQIQILEGLEAVRKRPGMYIGTTSSRGLHHLVYEIVDNSVDEALAGYCGEIS 78 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +TV D+GRGIPV+ K K LE++ T LHAGGKF S Y++SGGLHGVG Sbjct: 79 VTIEPDNSITVEDDGRGIPVDIQKKA-GKPALEVVFTVLHAGGKFGGSGYKVSGGLHGVG 137 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFG 217 SVVNALS +L V V R I+ F RG +P+ + GT + F+PDP+IF Sbjct: 138 ASVVNALSRKLWVRVYRDGKIYQMDFERGKTTAPMRVVGSCEPERHGTSVHFQPDPEIFE 197 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ ++ +E E +++ F+F GG+K ++ Sbjct: 198 ETV-YDFETLKVRLRETAFLTRALRINLKDKREGQE-----QEKSFHFEGGIKEFVSYLN 251 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + SE+ + EK VE A+ + I ++ N I T EGGTH +G + Sbjct: 252 RGKDPLYSEVIYCEGEKDKIF---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKN 308 Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALT+ YA + + ++ +D+ GI+SV I +P+F GQTK KL + +AQ Sbjct: 309 ALTKTFNDYARQNKLLKDSEPNLSGEDIREGLTGIISVKIEDPQFEGQTKQKLGTSEAQT 368 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V++ + + ++L QNP A + E ++ + R+ + RK+A+ + LPGKL Sbjct: 369 AVQSIVSEQLTYFLEQNPSVAKIMCEKSILAQRARAAARKARDLTRRKSALEGVGLPGKL 428 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS E+FIVEGDSA G AK+ RN QAVLPLRGK+LNV A ++I N++I Sbjct: 429 VDCSSRDPASCEIFIVEGDSALGPAKEGRNVETQAVLPLRGKVLNVQKARLDRIYANEEI 488 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + LRY K+IIMTDADVDGAHIA+L+LTF Y M +LI Q H++ Sbjct: 489 KGMITAFGTGINEDFDITKLRYHKIIIMTDADVDGAHIATLMLTFIYNFMPELIRQGHIY 548 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLF I + K YA+ +E Q IL E G ++SRFKGLGEM +L ET M Sbjct: 549 LAQPPLFNIQKNKKHYYAYSDEEYQNILREIGAEGT---DVSRFKGLGEMDTEELAETTM 605 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D RTLLRV + + + + LMG + + R +FI++ A +++ + Sbjct: 606 DPETRTLLRVNM--AEDDRAELDLTFTTLMGDQVEPRREFIEQNAKYVNHLD 655 >gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275] gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275] Length = 633 Score = 638 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 381/648 (58%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y AS I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG + I V++ Sbjct: 3 QEYGASQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSKIYVAI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D+GRGIPVE HPK STLE +LT LHAGGKF Y++SGGLHGVG+SV Sbjct: 63 NADGSITVEDDGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V R + Q++ +G P + LE + + GT I+F PD ++F + Sbjct: 122 VNALSEWLVAEVHRDGKAYRQEYKKGNPQTKLEVVGE-SDHTGTIISFMPDAEVFDEI-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + ++L+ +K + +E EKY +F++ GGL Y++ ++R+ Sbjct: 180 FSFDTLEYRLRELSFLNKGIKIIFEDKREGKEKYR-----DFHYTGGLVEYVKFLNKSRT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I +I K VE A+ + + I S+ N I T EGG+H +G + ALT+ Sbjct: 235 GIHEDIVYI---DKKVDDCLVEIAMQYTDGYTENIYSFANNINTHEGGSHLAGFKAALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I +YA+ + ++ +D+ ++SV + +P+F GQTKTKL + + V+ Sbjct: 292 TINEYAKRNGALKDKDSNLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTFMRGIVDG 351 Query: 399 ALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + +L +NP A +++ + + +R + RK+ + LPGKLADCS Sbjct: 352 VTVEELGSFLEENPNTAKVIVDKALRAQRAREAAKRARELTRRKSVLESTSLPGKLADCS 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+F+VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV + +KI + +I +++ Sbjct: 412 EKDPSKSEIFLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKSRLDKILASDEIKNMI 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + + E RY K+IIMTDADVDGAHI +LLLTFF++ M LIE+ +++ P Sbjct: 472 TAYGCGIGNDFDLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEEGYVYAAQP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++T+ K Y + ++ +L E G+ K +I R+KGLGEM QL +T M+ Sbjct: 532 PLYKVTKQKKEYYVYSDKELDDLLNEI---GRDKYDIQRYKGLGEMNPEQLWDTTMNPET 588 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + + LMG K R +FIQE A ++ ++ Sbjct: 589 RTLLQVTIED----AAIADEIFSMLMGDKVAPRREFIQENAKYVRNLD 632 >gi|167766860|ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1] gi|167711408|gb|EDS21987.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1] gi|291558400|emb|CBL37200.1| DNA gyrase, B subunit [butyrate-producing bacterium SSC/2] Length = 640 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 270/652 (41%), Positives = 385/652 (59%), Gaps = 19/652 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A I+ILEGLE VR RPGMYIG T EK LHHL E++DNA+DE +AG+ + I Sbjct: 3 TQKNGEYGADQIQILEGLEAVRKRPGMYIGSTSEKGLHHLVYEIVDNAVDESLAGFCDTI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V+L+ +G +TV DNGRGIPV + K S++E++ T LHAGGKF Y++SGGLHGV Sbjct: 63 IVTLNKDGSVTVEDNGRGIPVGINKK-KGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALSD L VTV ++ I Q++ RG PL+ +K GT +TF PD IF Sbjct: 122 GSSVVNALSDWLEVTVCKEGHIHKQRYERGKVCYPLKVLGDT-DKTGTTVTFYPDATIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L + + A+L+ +K + D+ E F++ GG+K ++ Sbjct: 181 TI-DFDYNTLKRRLRETAFLTKNLKIVLTDDR-----GEEQVSETFHYEGGIKEFVTYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + + ++ + EK G + VE A + S+ N I+T EGGTH SG ++ Sbjct: 235 KGKEALYPDVIYCEGEKDGVY---VEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGFKM 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALT YA ++ ++ +D+ ++S+ I EP+F GQTK KL + +A+ Sbjct: 292 ALTSTFNDYARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGNSEARG 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + L + ++L QNP A + E + R RK R+ RKTA+ + LPGKL Sbjct: 352 AVNSILSEQLKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMSLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +K+ N++I Sbjct: 412 ADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNKEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + E LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI++ +++ Sbjct: 472 QAMITAFGTGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+ + K YA+ +E IL+E + K I R+KGLGEM A QL +T M Sbjct: 532 LAQPPLYRVEKNKKFWYAYSDEELNNILQEIGRDNNNK--IQRYKGLGEMDAEQLWDTTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D KR LLRV +++D S + + LMG + + R +FI+ A ++ ++ Sbjct: 590 DPEKRILLRVNLDED--SASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLD 639 >gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar bolivia] Length = 632 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIYEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM 18228] gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM 18228] Length = 656 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 260/662 (39%), Positives = 390/662 (58%), Gaps = 23/662 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ NY AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY Sbjct: 6 TPNSGSNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCTH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHG Sbjct: 66 IEVTINEDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG+S VNALS + V R ++ Q++ G PL P+++ GTR TF PD I Sbjct: 125 VGVSCVNALSTHMTTNVFRGGKVYQQEYECGKPLYPVKEVGTCAPGMTGTRQTFWPDGNI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + AYL+ + + + + E+ G ++E F+ G+K +++ Sbjct: 185 FTVT-EYKYSILQARMRELAYLNKGITITLTDKR-VKEEDGSFKQEVFHSEEGVKEFVRF 242 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + + ++ TEK+G +E AI + + SY N I T EGGTHE+G Sbjct: 243 LNSTNTPLIDDVIYLNTEKQGIP---IECAIMYNTGFRENLHSYVNNINTIEGGTHEAGF 299 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE ++ K + I +D + ++SV + EP+F GQTKTKL + + Sbjct: 300 RTALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEV 359 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V A+ + +YL ++P EA +++ V+ + R+ RK RE ++ + + LPG Sbjct: 360 SGAVNQAVGEALTYYLEEHPKEAKVIVDKVVLAATARIAARKARESVQRKSPMGGGGLPG 419 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + Sbjct: 420 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESD 479 Query: 512 QIMDLVQALGCRT-------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++ +++QALG R + + LRY K+IIMTDADVDG+HI +L++T FY+ M Sbjct: 480 EVNNIIQALGIRFGVDGDEDSKKANIDKLRYYKIIIMTDADVDGSHIDTLIMTLFYRYMP 539 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++I+ HL++ +PPL++ ++G S Y + +E +Q ++++ + I R+KGLGEM Sbjct: 540 EVIQGGHLYIATPPLYKCSKGKISEYCYTDEERQAFMQKYGDGSENGIHTQRYKGLGEMN 599 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET M+ R L +V I + + + LMG R +FI++ A++ ++ Sbjct: 600 PEQLWETTMNPETRMLKQVHIE----NAAEADYIFSMLMGDDVAPRREFIEKNATYA-NI 654 Query: 685 GT 686 Sbjct: 655 DA 656 >gi|22298189|ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1] gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1] Length = 640 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 246/651 (37%), Positives = 367/651 (56%), Gaps = 19/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y ++ +R+L+GLEPVR RPGMYIG T K LHHL EV+DN++DE +AGY + I V Sbjct: 2 TAEYSSAQLRVLKGLEPVRTRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCSTILVQ 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIP + HP S +E ++T LHAGGKF + Y++SGGLHGVG+S Sbjct: 62 INADGSVTVTDDGRGIPTDIHP-DTGVSGVETVMTVLHAGGKFGDGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VTV R + Q++ RG+P +PLEK +RGT +TF PD +IF + Sbjct: 121 VVNALSEWLEVTVWRNGFVHHQRYERGVPTTPLEKTPDTEERRGTSVTFFPDRQIFTETI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FDA L+ + AYL+ ++ + + P E + + GG++ Y++ ++ + Sbjct: 181 EFDAKVLMTRLRELAYLNAGIRIEFKDLR-----VTPPLSETYCYEGGIREYVRYMVQEK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + EK + + + + N I T +GGTH GL+ LTR Sbjct: 236 EPLHPEIIYIQGEKDDV-QVEAALQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + + ++ +++ I+SV + PEF GQTKTKL + + + V+ Sbjct: 295 TLNALGRKRNKLKENNANLAGENIREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDA 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457 + YL +P +LE I+ R+ RE+ RK+ + LPGKLADCS Sbjct: 355 IVGAALTEYLDFHPNVTDTILEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N ++ L+ Sbjct: 415 SRDPAVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 474 Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY K+I+MTDADVDG+HI +LLLTFFY+ +L+ Q +++ Sbjct: 475 TALGLGVKGEEFDPAKLRYHKIILMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIAC 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G + Y + + Q+ + F ++ I RFKGLGEM+ QL ET M+ Sbjct: 535 PPLYKVERGRQHFYCYSDRELQQQIASFPENAN--YTIQRFKGLGEMMPEQLWETTMNPE 592 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 R L RVEI + LMG + R +FI+ ++++ Sbjct: 593 TRILKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGPQLALENLD 639 >gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271] gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271] Length = 640 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLIIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1] gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1] Length = 640 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 386/654 (59%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++E+ +KIL+E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILDELPAQPKPG--IQRYKGLGEMNPAQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293] gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293] Length = 640 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPAQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|307946858|ref|ZP_07662193.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4] gi|307770522|gb|EFO29748.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4] Length = 682 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 407/686 (59%), Positives = 518/686 (75%), Gaps = 6/686 (0%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ DLF+ S+ + K K + P + + +Y A+ I +LEGLEPVR Sbjct: 1 MS-AKDDLFAGNTALSEKAKAKPKPEKKAQARPQPVAPAEAGDYSAADIEVLEGLEPVRR 59 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A I+V+L +G+LT+VDNGRGIPV+ Sbjct: 60 RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVTLGADGYLTIVDNGRGIPVDP 119 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKF +KS LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALS++L V VAR ++ Sbjct: 120 HPKFVDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEDLVVEVARTRKLY 179 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q+F RG P++PLE N+RGT + F+PDP+IFG AGF RLLKM +SKAYL G Sbjct: 180 RQQFQRGRPVAPLELVGDTHNRRGTSVRFKPDPEIFGKSAGFKPERLLKMARSKAYLFGG 239 Query: 241 VKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C+ I EK P + F+FPGGLK +L +LE + +IF G+T+K G+H Sbjct: 240 VEIRWHCEPALIKEKDETPTEAVFHFPGGLKDFLAERLEKERRVVDDIFAGRTDKAGSH- 298 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 G+VEWA++W + + SYCNT+ T EGGTHE+GLR AL RG+K Y ELT NK+A I Sbjct: 299 GSVEWAVSWFAGDGFVNSYCNTVPTPEGGTHETGLRYALMRGLKAYGELTNNKKAAIITG 358 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD++ SA G+LSVFIREPEF GQTK KL + +A R ENA+RD FDH+L +P +A KLL Sbjct: 359 DDILTSAGGMLSVFIREPEFVGQTKDKLATNEATRITENAVRDAFDHWLTASPNQANKLL 418 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 EWVI+R+E+RLRRRK+++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSAGGSAK Sbjct: 419 EWVIDRAEDRLRRRKEKDVARKTAVRKLRLPGKLADCSANQSDGTELFIVEGDSAGGSAK 478 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNRSNQAVLPLRGKILNVA+AG +K+ NQQ+ DL+QALGC TRS YR++DLRYEK+I Sbjct: 479 QARNRSNQAVLPLRGKILNVANAGRDKLAANQQLADLIQALGCGTRSSYRDDDLRYEKII 538 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 +MTDADVDGAHIASLL+TFF++EM ++I HL+L PPL+R+TQG K++YA D+ HK + Sbjct: 539 VMTDADVDGAHIASLLITFFFREMPEMIHNGHLYLAVPPLYRLTQGGKTLYARDDTHKDE 598 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L + K GKGKI+I RFKGLGEML +QLKET MD +RTLL+V + K+T ++ Sbjct: 599 LLAKAFK-GKGKIDIGRFKGLGEMLPAQLKETTMDPTRRTLLKVGVESGFE--KETGTTV 655 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 ++LMG K + RF+FIQE A F +D+ Sbjct: 656 DRLMGNKPEARFRFIQENAEFAEDLD 681 >gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1] gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1] Length = 638 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 264/655 (40%), Positives = 388/655 (59%), Gaps = 22/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q ++ Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY Sbjct: 1 MDQQQQNNKYSADQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ + +TV DNGRGIPV+ HPK + +E++LT LHAGGKF Y++SGGL Sbjct: 61 DKIIVTIQEDNSITVEDNGRGIPVDLHPKV-GRPAVEVVLTMLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L V + R I+ Q++SRGIP + L+ + GT++TF+PD + Sbjct: 120 HGVGVSVVNALSKYLSVEIKRNGKIYKQEYSRGIPTTELQIVGNSK-TTGTKVTFKPDEE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F L + + AYL+ +K ++ I F + GG+K +++ Sbjct: 179 IFEELV-FSLETLSQRIRELAYLNKGIKIILQDKRKDPVAEQI-----FQYDGGIKDFVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ I ++ EK+ + VE AI + + + SY N I T +GGTHE G Sbjct: 233 HLNRNKQTIHTKPIYVSGEKE---QIVVEVAIQYNDGYTENMLSYANNIHTVDGGTHEVG 289 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 L+ ALTR I Y + ++ +D+ A ++SV + EP+F GQTKTKL + + Sbjct: 290 LKTALTRVINDYGRQHGVLKNNDANLSGEDIREGATIVISVKVPEPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + V++ + YLV+NP A K++E I + R RK RE RK+A+ + LP Sbjct: 350 VRGIVDSIFAEKLSTYLVENPSVAKKIIEKGITAARAREAARKARELTRRKSALETMSLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ +E+++VEGDSAGGSAKQ R R QA+LPL+GKILNV A +KI N Sbjct: 410 GKLADCSEKDPSVSEIYLVEGDSAGGSAKQGRERRFQAILPLKGKILNVEKARMDKILAN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ A+G + RY K++IMTDADVDGAHI +LL+TFFY+ M LIE Sbjct: 470 EEIRAMITAMGTGIGEDFDIAKARYHKIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++F+ PPL+R+ +G Y + + +++L G ++ I R+KGLGEM QL E Sbjct: 530 YVFVAQPPLYRVRKGKHDSYCYSDNELEELLNRI---GHDRVNIQRYKGLGEMNPEQLWE 586 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + RT+L+V + + + + + LMG + + R FIQE A ++ ++ Sbjct: 587 TTMDPDTRTMLQVTLEDAI----EADATFSMLMGDRVEPRRDFIQENAKYVRNLD 637 >gi|13878524|sp|O29720|GYRB_ARCFU RecName: Full=DNA gyrase subunit B Length = 632 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 258/656 (39%), Positives = 368/656 (56%), Gaps = 30/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A I +L+ LE VR RPGMYIGG + LHHL EV+DNA+DE +AGY Sbjct: 1 MSPDQTAVEYTAKDIEVLDDLEAVRKRPGMYIGGVGVRGLHHLLWEVVDNAVDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+VSL +G +V DNGRGIP E H KS LEI++T LHAGGKF Y +SGGL Sbjct: 61 DTIKVSLHKDGSASVEDNGRGIPTEMHE--LGKSALEIVMTKLHAGGKFSKKVYRVSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG----IPLSPLEKKEKVRNKRGTRITFR 210 HGVG+SVVNALS+ L V V R I+ QK+ RG E + + GT + F+ Sbjct: 119 HGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETKEH-GTTVRFK 177 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD +IF F + + + AYL+ +K ++E E E F+F G+ Sbjct: 178 PDREIFETT-EFKYEIVAQRLKELAYLNRGLKIILFDEREGKE-------ETFHFEDGII 229 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ NR + I +T K G +VE AI + + + I ++ N I T EGG+ Sbjct: 230 GLVRSLNRNRKPLHEPI-YIETTKDGV---SVEVAIQFTDSDVENIQAFANNINTSEGGS 285 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 H G R LTR + +Y + K+ + D+ ++SV + EP+F GQTKTKL + Sbjct: 286 HVVGFRAGLTRAVNEYGK-KHLKKFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTN 344 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 D + VE+A+ +L +NP +A LL I + R ++ +E+ ++ L Sbjct: 345 SDVKTVVESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNELITTL 404 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS ELFIVEG+SAGGSAKQAR+R QA+LP++GKI+NV AG ++ Sbjct: 405 PGKLADCSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLK 464 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A+G + RY ++IIMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 465 NDEIKAIISAIGAGIGKDFDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIES 524 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +L++ PPL++I +G KS YA+ +E ++ LE+ G E+ R+KGLGEM QL Sbjct: 525 GYLYIAQPPLYQIKKGKKSYYAYSDEELKRTLEQV-----GGGEVQRYKGLGEMNPQQLW 579 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R L++V + K + + LMG + R FI + + ++ Sbjct: 580 ETTMNPENRILIQVTLED----AKRADELFSILMGEDVESRRNFIMAHSKEVKNLD 631 >gi|159184842|ref|NP_354616.2| DNA topoisomerase IV subunit B [Agrobacterium tumefaciens str. C58] gi|159140126|gb|AAK87401.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58] Length = 710 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 450/714 (63%), Positives = 535/714 (74%), Gaps = 34/714 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA-------------------- 40 M DDS DLFS LP +E + + + +PA A + Sbjct: 1 MMDDSNDLFSGLPAAQNSDTETNEDTVKPVKAPATAAANVPANRNVQPKPAAIAAIPTSA 60 Query: 41 --------SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 SD+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG Sbjct: 61 PPAPVSPSSDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAG 120 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +AN IEV LD GFLTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SG Sbjct: 121 HANFIEVHLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSG 180 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALSD L V VAR ++ Q+FSRG P+ LE+ V N+RGTR+ F PD Sbjct: 181 GLHGVGVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPD 240 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKT 271 P+IFGD A F+ AR+ +M +SKAYL G V+ WSCD + G PEK F+FPGGLK Sbjct: 241 PQIFGDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKD 300 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331 YL L ++ EIF+G+TEK G H G +EWA+ W + +I SYCNTI T EGGTHE Sbjct: 301 YLAATLGKEFTVTREIFSGRTEKTGGH-GALEWAVTWYGGDTQIHSYCNTIPTPEGGTHE 359 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G R+ALT+G+K YAELTQNKRA I +DD+MISA G+LSVFIREPEF GQTK KL +++ Sbjct: 360 AGFRIALTKGLKNYAELTQNKRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVE 419 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 AQR VENALRDPFDHYL NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPG Sbjct: 420 AQRIVENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPG 479 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCSQN A ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNV SA EK+ NQ Sbjct: 480 KLADCSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQ 539 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 QI DL+QALGC TR++YREEDLRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI H Sbjct: 540 QIADLIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNH 599 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+ I QG KS YA D+ H+ +++E K K+EI RFKGLGEM+A+QLKET Sbjct: 600 LYLAVPPLYVIRQGAKSAYARDDAHRAELMETVFK--GKKVEIGRFKGLGEMMAAQLKET 657 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KRTLLRVEI+ + T+++++ LMGTKAD RF+FIQERA+F D++ Sbjct: 658 TMDPEKRTLLRVEIDDV--DFEGTREAVDNLMGTKADARFRFIQERAAFADNLD 709 >gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442] gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442] Length = 640 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP + L+ + + GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E H K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro] gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro] Length = 633 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 256/644 (39%), Positives = 372/644 (57%), Gaps = 20/644 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ +I V+++ Sbjct: 7 YDASHIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTIINVTINP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV+DNGRGIPV+ HP F KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN Sbjct: 67 DGSVTVLDNGRGIPVDPHP-FHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 LS+ L V VAR+ + Q++ RG P + + + T+ TF+PD KIF FD Sbjct: 126 GLSEWLEVEVAREGKKYFQRYDRGKPKADVLEIGTSETTG-TKTTFKPDEKIFETL-DFD 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ + + + E F + GG+ +++ + + Sbjct: 184 YEILSNRLRELAFLNRGLTISLMDLRTPD-----GQAETFTYEGGIVEFVKYLNNKKQPL 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343 + I+ + +++ ++ E + S+ N I T EGGTH G + ALTR Sbjct: 239 HAPIYFERQRDDMVVEIAMQYTSSYAEN---VYSFANNINTHEGGTHIIGFKTALTRVAN 295 Query: 344 KYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 Y + + K I + DD+ I+SV + EP+F GQTKT+L + D + V++ + D Sbjct: 296 DYIKANKLSKEDIKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSDVKGIVDSLVTD 355 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 Y +NP A +LE + + R +K RE RK A+ LPGKLADCS+ Sbjct: 356 GLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEKNP 415 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 E++IVEG+SAGGSAKQ R+RS QA+LPLRGKILNV + KI N++I+ L+ A+G Sbjct: 416 AACEIYIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITAIG 475 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + E RY KVIIMTDADVDG HI +LLLT F++ M LI++ ++++ PPL+R Sbjct: 476 TGISEDFTLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPPLYR 535 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G Y H + + +E + G G I R+KGLGEM QL ET M+ R LL Sbjct: 536 IKKGKAEYYIHSDRELEAKKKELGEKGLG---IQRYKGLGEMNPGQLWETTMNPESRILL 592 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + + + LMG + + R FI+ A + ++ Sbjct: 593 QVTLEDAIR----ADEIFRVLMGDEVEPRRNFIEAHAKEVVNLD 632 >gi|34541335|ref|NP_905814.1| DNA gyrase subunit B [Porphyromonas gingivalis W83] gi|188994277|ref|YP_001928529.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277] gi|34397651|gb|AAQ66713.1| DNA gyrase, B subunit [Porphyromonas gingivalis W83] gi|188593957|dbj|BAG32932.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277] Length = 654 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 261/660 (39%), Positives = 385/660 (58%), Gaps = 20/660 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 +++ Y AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY + Sbjct: 6 KKNTSASEYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYCD 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 +EV ++ + +TV DNGRGIPV+ H K KS LE++LT LHAGGKFD +Y++SGGLH Sbjct: 66 NVEVIIEEDNSITVRDNGRGIPVDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKVSGGLH 124 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS L V R I Q+FS G PL +E + GT I F+PD I Sbjct: 125 GVGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGST-ERTGTTIQFKPDSSI 183 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L K + +YL+ + + + + E +++ F GLK +++ Sbjct: 184 FSVT-EYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFVRH 242 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + + + TEK+G VE A+ + + SY N I T EGGTH +G Sbjct: 243 LDRMKEPLVDNVIHIVTEKQGIP---VEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGF 299 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R LTR +KKYA ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 300 RRGLTRTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 359 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + ++YL ++P EA +++ V+ + R RK RE+ ++ + + LPG Sbjct: 360 TGAVDMAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPG 419 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A K+ ++ Sbjct: 420 KLADCSSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESE 479 Query: 512 QIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ ALG ++ + LRY KV+IMTDADVDG+HIA+L+LTFF++ M L Sbjct: 480 EIRNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE ++F+ +PPL+ +G + Y E+ +Q ++ + + ++ + R+KGLGEM Sbjct: 540 IENGYVFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGEMNEE 599 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD KRTL +V I + + + LMG + R +FI+E A++ + Sbjct: 600 QLWETTMDPEKRTLRKVTIE----NAAEADAIFSMLMGDEVGPRREFIEENATYAR-IDA 654 >gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102] gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102] Length = 640 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|284047394|ref|YP_003397733.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731] gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731] Length = 646 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 261/648 (40%), Positives = 383/648 (59%), Gaps = 24/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A I++LEGLE VR RP MYIG + LHHL EVIDN++DE +AGY + I V + Sbjct: 17 DYGAEQIQVLEGLEAVRKRPSMYIGSISGRGLHHLVYEVIDNSIDEALAGYCDHIRVIIH 76 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPVE H K +E+++T LHAGGKF + Y++SGGLHGVG+S V Sbjct: 77 PDNSITVTDNGRGIPVEMHK--VGKPAIEVVMTVLHAGGKFGDGGYKVSGGLHGVGVSCV 134 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS ++ V V + I+ +FS+G PL K + N+ GT +TF PD IF + Sbjct: 135 NALSKKMVVEVKKNGKIYGIEFSKGKTTRPLYVKGECPENETGTSVTFWPDDTIFTETV- 193 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + L + A+L+ VK + ++ + E F++ GG+ ++++ + + Sbjct: 194 YSYDTLKHRIRELAFLNKGVKIQLTDERS-------GQDEVFHYEGGIVSFVEFVNKGKE 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ + E++ T VE A+ + + I ++ N I T+EGGTH +GL+ ALTR Sbjct: 247 PLHAKPIYVEGERQDTI---VEVAMQYTDAYTENIYTFVNNINTEEGGTHLAGLKQALTR 303 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ DD+ ++S+ +REP+F GQTKTKL + + + V+N Sbjct: 304 CINDYARKNSLLKDNEDNLSGDDVREGLTCVMSLKVREPQFEGQTKTKLGNSEVRGIVDN 363 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + Y +N A K++E I S R RK R+ RK+A+ LPGKLADCS Sbjct: 364 MVTEALTEYFEENAPVAKKIVEKAIMASRARSAARKARDLTRRKSALEVSSLPGKLADCS 423 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A TE+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A +K+ N+Q+I ++ Sbjct: 424 SKNAAETEIYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKMLNSQEIRAMI 483 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M LI+ ++F+ P Sbjct: 484 TAFGCGIGDEFDIAKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIQNGNVFIAQP 543 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+ I G K YA+ +E Q+ L+E + + R+KGLGEM QL ET MD +K Sbjct: 544 PLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPY--VQRYKGLGEMNPEQLWETTMDPSK 601 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V++ + LMG K + R +FI+E A + ++ Sbjct: 602 RTVLQVQLED----AATADSVFSVLMGDKVEPRRQFIEENAGKVTNLD 645 >gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar poloniensis] Length = 632 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam] gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam] Length = 645 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 8 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 68 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 127 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 185 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 186 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 239 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 240 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 296 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 297 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 356 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 357 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 536 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 537 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 594 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 595 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 644 >gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames] gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne] gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bacillus anthracis str. A2012] gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488] gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442] gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193] gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465] gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389] gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174] gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I] gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W] gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99] gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108] gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97] gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187] gi|218901211|ref|YP_002449045.1| DNA gyrase, B subunit [Bacillus cereus AH820] gi|227812683|ref|YP_002812692.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684] gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201] gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26] gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1] gi|229603398|ref|YP_002864662.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248] gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066] gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055] gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B] gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum] gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94] gi|49066055|sp|Q9X3Y6|GYRB_BACAN RecName: Full=DNA gyrase subunit B gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames] gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne] gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis] gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488] gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193] gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442] gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389] gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465] gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174] gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I] gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W] gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108] gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99] gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97] gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187] gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820] gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684] gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1] gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26] gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201] gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248] Length = 640 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3] gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3] Length = 640 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|222086041|ref|YP_002544573.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84] gi|221723489|gb|ACM26645.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84] Length = 689 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 452/691 (65%), Positives = 552/691 (79%), Gaps = 12/691 (1%) Query: 3 DDSIDLFSTLP--PQSQGSSEKLKKSGEIPDSPAFA-----NQSASDNYDASSIRILEGL 55 D+S DLFS LP P+ + + + K+ +PA A S+++ Y A+SIR+LEGL Sbjct: 2 DNSNDLFSGLPVSPKPETAEKPAPKAESPVAAPAPAPRAAPTTSSAEEYGANSIRVLEGL 61 Query: 56 EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115 EPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A+ IEV LD G+LTV DNGRG Sbjct: 62 EPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHADFIEVHLDQRGYLTVTDNGRG 121 Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175 IPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNALSD+L V VAR Sbjct: 122 IPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVAR 181 Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235 ++ Q+FSRG+P LE+ V N+RGTR+ F PDP+IFGD A FD AR+ +M +SKA Sbjct: 182 NRKLYRQRFSRGVPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHAKFDPARVFRMARSKA 241 Query: 236 YLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 YL G V+ WSCD E+A +P+K F+FPGGLK YL+ + N ++ EIF GK+EK Sbjct: 242 YLFGGVEIRWSCDPELAPAGSDVPDKAVFHFPGGLKDYLKATMGNEFTVTREIFAGKSEK 301 Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 GT G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA Sbjct: 302 -GTGHGSLEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRA 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I +DD+MIS VG+LS+FIREPEF GQTK +L +++AQR VENALRDPFDHYL NP E Sbjct: 361 AGITTDDVMISGVGMLSIFIREPEFVGQTKDRLATVEAQRIVENALRDPFDHYLTDNPTE 420 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 A KLLEWVIERSEERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELF+VEGDSA Sbjct: 421 AEKLLEWVIERSEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFLVEGDSA 480 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQARNR NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC TRS+YREEDLR Sbjct: 481 GGSAKQARNRMNQAILPLRGKILNVASAGREKLSANQQIADLVQALGCGTRSKYREEDLR 540 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y+++++MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL++ITQG+KS+YA D+ Sbjct: 541 YQRIVVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSIYARDD 600 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 H+ +++E K GKGKIEISRFKGLGEML +QLKET MD +KRTLLRV I++ + Sbjct: 601 AHRLELMESDFK-GKGKIEISRFKGLGEMLPAQLKETTMDPSKRTLLRVVIDEV--DFEG 657 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+D+++ LMGTK + RF+FIQERA+F +++ Sbjct: 658 TRDAVDNLMGTKPEARFRFIQERAAFAENLD 688 >gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar tohokuensis] Length = 632 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 381/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLSTRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29] gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3] gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3] gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29] gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 640 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6] gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6] Length = 621 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 250/644 (38%), Positives = 366/644 (56%), Gaps = 26/644 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I +L +E VR RPGMYIGG + LHHL E++DN++DE +AG+ I V+L Sbjct: 2 EYTAEQIEVLGDIEAVRKRPGMYIGGIGLRGLHHLLWEIVDNSIDEALAGHCKNITVTLH 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +V D+GRGIP E H + +EI+LT LHAGGKF+ Y+++GGLHGVG+SVV Sbjct: 62 KDGSASVEDDGRGIPTEVHE--LGRPAVEIVLTKLHAGGKFNKKAYKVAGGLHGVGLSVV 119 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V V R I+ QK+ RG+P++PL+ + + GT+I F+PD +IF F Sbjct: 120 NALSEWLEVWVKRNGKIYYQKYERGVPVTPLQVIGETKE-TGTKIRFKPDEEIFETT-EF 177 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + + AYL+ ++ ++ K FY G+K ++ +N+ + Sbjct: 178 RWDIVAQRLKELAYLNKGIRLKLIDERSGKSKE-------FYSEDGIKGFVAQLNKNKPV 230 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I I + EK G VE AI + + + + N I T EGGTH G R LTR Sbjct: 231 IHDVIHFSE-EKNGIM---VEVAIQFTDTEIENVLFFANNINTIEGGTHAVGFRAGLTRA 286 Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 I ++ + K+ + D+ ++SV + EP+F GQTKTKL + + + VE+ + Sbjct: 287 INEFGK-KYVKKFKPLTGADIREGLTAVVSVKVPEPQFEGQTKTKLTNSEVKTVVESIVY 345 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461 +L ++P EA +++E I + R RK RE+ R+ + LPGKLADCS Sbjct: 346 SEVLKWLEEHPNEANRIIEKCILAMKAREAARKAREIVRRKGEISITLPGKLADCSSKNP 405 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 ELFIVEG+SAGGSAKQAR+R QA+LP+RGKI+NV AG K N++I + A+G Sbjct: 406 EERELFIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMAKALRNEEIKAIAAAIG 465 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + RY +VIIMTDADVDGAHI +LLLTFFY+ M LIE +L++ PPL+R Sbjct: 466 AGIGKDFDITKARYRRVIIMTDADVDGAHIRTLLLTFFYRYMKPLIESGYLYIAQPPLYR 525 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + + +LE E+ R+KGLGEM QL ET M+ + R L+ Sbjct: 526 VKKGKKVYYVYSDRELEDLLERIGNA-----EVQRYKGLGEMNPEQLWETTMNPHNRYLI 580 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + ++ + LMG + R +FI E + + ++ Sbjct: 581 QVTLED----AARAEELFSVLMGEDVEARKRFIMEHSKEVRNLD 620 >gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987] gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987] gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 640 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|240850782|ref|YP_002972182.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup] gi|240267905|gb|ACS51493.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup] Length = 688 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 428/691 (61%), Positives = 524/691 (75%), Gaps = 10/691 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF-----ANQSASDNYDASSIRILEGL 55 M+D+ DLFS L + K S A A + D+Y+A SIR+LEGL Sbjct: 1 MSDNKKDLFSVLNKAQSRVNTKENTLQSPMKSKAMISKKSAKDTQEDDYNALSIRVLEGL 60 Query: 56 EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115 EPVR+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ IEVSLD NG++TV DNGRG Sbjct: 61 EPVRLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADFIEVSLDRNGYITVTDNGRG 120 Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175 IPVENHP+ P KSTLE+I+T LH+GGKFD Y+ +GGLHGVGISVVNALSD++ V VAR Sbjct: 121 IPVENHPQMPEKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVAR 180 Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235 + ++ Q+FSRGIP S LE V N+RGTR+ F PD +IFG+KA F+ ++ KM SKA Sbjct: 181 ERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDREIFGEKAAFEPEKIYKMACSKA 240 Query: 236 YLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 YL G VK W+CD I E IPEK F+FP GLK YL + L++ ++SEIF+GKT++ Sbjct: 241 YLFGGVKIRWTCDPVILEGAKNIPEKAVFHFPNGLKDYLLSSLKDEYRVTSEIFSGKTQQ 300 Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 H G+VEWAIAW + + SYCNTI T EGGTHE GLR AL RG+K YAEL NKRA Sbjct: 301 NNGH-GSVEWAIAWHGGDSCVQSYCNTIPTGEGGTHEIGLRQALLRGLKSYAELIGNKRA 359 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I SDD+MIS ILSVFI PEF GQTK +L +++AQR VENA+RDPFDH+L +P E Sbjct: 360 TIITSDDIMISTAAILSVFISNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 419 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 ATKLL+WVIER+EER++RR+ RE++RKTA+RKLRLPGKLADCSQN A G ELFIVEGDSA Sbjct: 420 ATKLLDWVIERAEERVKRRQDREISRKTAVRKLRLPGKLADCSQNHAVGAELFIVEGDSA 479 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQARNR+NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE+DLR Sbjct: 480 GGSAKQARNRANQAILPLRGKILNVASAAHEKMNSSQTISDLILALGCGTRSKYREKDLR 539 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 YE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K YA D+ Sbjct: 540 YERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQGHLYLAVPPLYRISQGGKVAYARDD 599 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 HK ++L+ + GK K+EI RFKGLGEM A QLKET M KRTLLRV I D +++ Sbjct: 600 IHKDELLKT-EFTGKAKVEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DAVEMQE 656 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+ ++ LMGTK + RF+FIQE ++F ++ Sbjct: 657 TKKTVESLMGTKPEARFRFIQENSTFASNLD 687 >gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis] Length = 632 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELSAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|227873174|ref|ZP_03991465.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] gi|227841005|gb|EEJ51344.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] Length = 654 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 375/651 (57%), Gaps = 20/651 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ N I V Sbjct: 18 GSKEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNSVDEALAGFCNTITV 77 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + N +TV DNGRGIPV+ K KS LE++ T LHAGGKF + Y++SGGLHGVG Sbjct: 78 KIHQNNSITVRDNGRGIPVDIQKKA-GKSALEVVFTVLHAGGKFGGAGYKVSGGLHGVGA 136 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGD 218 SVVNALS+ L V V ++ I++ F++G P+E + +GT + F PD IF + Sbjct: 137 SVVNALSEWLDVKVYKEGKIYTMSFAKGKVTKPIECIGTCSEEEQGTEVHFLPDASIFEE 196 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + A+L+ +K ++E EK F++ GG++ ++ + Sbjct: 197 SV-YDFETLKIRLRETAFLTKNLKIRLVDEREGQEKEKE-----FHYEGGIQEFVTFLNK 250 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + ++ + EK+ VE A+ + I ++ N I T EGGTH +G + A Sbjct: 251 GKEALYPDVIYCEGEKEKIL---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNA 307 Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ YA + + ++ +D+ I+SV I +P+F GQTK KL + +AQ Sbjct: 308 LTKTFNDYARQNKLLKDSEANLSGEDIREGLTCIISVKIEDPQFEGQTKQKLGTSEAQVA 367 Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V+ + + ++L QNP A + E ++ + R+ + RK+A+ + LPGKLA Sbjct: 368 VQGIVSEQLTYFLEQNPAVAKVICEKSILAQRARAAARKARDLTRRKSALDGVGLPGKLA 427 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E+FIVEGDSA G AK+ RN QAVLPLRGK+LNV A ++I N++I Sbjct: 428 DCSSKDPERCEIFIVEGDSALGPAKEGRNPETQAVLPLRGKVLNVQKARLDRIYANEEIK 487 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K+IIMTDADVDGAHI++L+LTF Y M +LI + H++L Sbjct: 488 GMITAFGTGIHEDFDLSKLRYHKIIIMTDADVDGAHISTLMLTFIYNFMPELIRKGHVYL 547 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLF I + K YA+ +E Q+IL+E G ++SRFKGLGEM +L+ET +D Sbjct: 548 AQPPLFTIQKNKKHYYAYSDEEYQRILKEIGSDGA---DVSRFKGLGEMNTEELQETTLD 604 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLLRV ++ + + LMG + + R +FI++ A ++ ++ Sbjct: 605 PESRTLLRVNMSD--EDKAELDITFTTLMGDQVEPRREFIEQNARYVTNLD 653 >gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 645 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 8 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 68 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 127 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 185 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 186 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 239 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 240 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 296 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 297 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 356 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 357 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 417 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 477 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 536 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 537 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 594 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 595 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 644 >gi|319408573|emb|CBI82226.1| topoisomerase protein [Bartonella schoenbuchensis R1] Length = 692 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 426/695 (61%), Positives = 530/695 (76%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFS---------TLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51 M+D++ DLFS SQ +S K + A + + +++Y+ASSIR+ Sbjct: 1 MSDNNKDLFSILNKAQLRMETKANSQQTSVNSKATPAKVPVSASKDNAETNDYNASSIRV 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD +G+LTV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDKDGYLTVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIP+ENHP+ P+KSTLE+I+T LH+GGKFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPIENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR+ ++ Q+FSRGIP S LE V N+RGTR+ F PD KIFG+K F+ ++ KM Sbjct: 181 EVARERKLYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKIFGEKTAFEPEKIYKMA 240 Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL VK WSCD + E +PEK F+FP GLK YL + L ++ I++EIF+G Sbjct: 241 RSKAYLFSGVKIRWSCDPIVLEGINNVPEKATFHFPDGLKDYLSSSLNSKYCITTEIFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KT+++ H G+VEWA+AW + + SYCNTI T EGG+HE GLR AL RG+K YAEL Sbjct: 301 KTKQRANH-GSVEWAVAWHSGDAGVQSYCNTIPTREGGSHEIGLRQALLRGLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKRA I SDD+M SAV +LSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L Sbjct: 360 NKRAAIITSDDVMASAVAVLSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL+WVIER+EER++RR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVE Sbjct: 420 SPQEATKLLDWVIERAEERVKRRQDREINRKTAVRKLRLPGKLADCSQNSAAGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR+NQA+LPLRGKILNVASA EK+ +Q I DL+ LGC TRS+YRE Sbjct: 480 GDSAGGSAKQARNRANQAILPLRGKILNVASAAREKMITSQTISDLILVLGCGTRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE+VIIMTDADVDGAHIASLL+TFF+QEM DLI HL+L PPL+RI+QG K Y Sbjct: 540 DDLRYERVIIMTDADVDGAHIASLLITFFFQEMPDLIRGGHLYLAVPPLYRISQGGKIAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A ++ HK ++L+ + GK KIEI RFKGLGEM A QLKET M KRTLLR+ IN Sbjct: 600 ARNDAHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRISIN--AL 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ T+D + LMG+K + RF+FIQE ++F ++ Sbjct: 657 EMQKTKDIVESLMGSKPEARFRFIQENSTFAHNLD 691 >gi|218895146|ref|YP_002443557.1| DNA gyrase, B subunit [Bacillus cereus G9842] gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222] gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842] gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222] Length = 640 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803] gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803] Length = 640 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2] gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2] Length = 642 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 259/656 (39%), Positives = 379/656 (57%), Gaps = 20/656 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + ++Y+AS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 AMEEKGLQESYEASQIQVLEGLEAVRKRPGMYIGSTGARGLHHLVWEIVDNSIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I VS++ + ++ V DNGRGIPV K + +E+I+T LHAGGKF Y++SGG Sbjct: 62 CTEIRVSIEPDNWIRVEDNGRGIPVGMQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS+ V V R KF RG L + GT I F+ D Sbjct: 121 LHGVGASVVNALSETTEVYVNRDEKRHYIKFERGAVTEELNVIGD-SDHTGTTIRFKADA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + ++ L + AYL+ +K ++E EK I ++F GG+K+Y+ Sbjct: 180 EIFKETTVYEFDILDHRLRELAYLNRGLKIVVKDEREGEEKEKI-----YHFEGGIKSYV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHES 332 + +++ + E + E+ G TVE A+ + I S+ N I T EGGTHES Sbjct: 235 EHLNKSKDPLHEEAIFVEAERDGI---TVEVAMQYNAGYAANIFSFANNINTHEGGTHES 291 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR + Y + +++ DD+ I+SV +P+F GQTKTKL + Sbjct: 292 GFKTALTRVVNDYGRKKSMLKEQDLNLTGDDVREGLTAIISVKHPDPQFEGQTKTKLGNT 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + V N + F+ +L++NP + K++E I S R+ +K RE R+ + + L Sbjct: 352 EVSTIVNNLFSNGFERFLLENPAVSKKIVEKGIMASHARMAAKKAREFTRRKSVLEVSSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAK R+R QA+LPLRGKILNV A ++I Sbjct: 412 PGKLADCSSRDPKISEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILT 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I +++ ALG ++ E RY K++IMTDADVDGAHI +LLLTF ++ M L+E Sbjct: 472 NDEIRNIITALGTGIGEEFNLEKARYHKIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEA 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPLF+I QG Y + + + LE K I R+KGLGEM A+QL Sbjct: 532 GYIYIAQPPLFQIKQGKHVEYVYTDAQLKTALENLSPT--PKPNIQRYKGLGEMNATQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD + RTLL+V +N + ++ + LMG + + R FI+E A ++ ++ Sbjct: 590 DTTMDPDVRTLLQVTLNDAMV----ADETFHILMGDEVEPRRNFIEENAKYVKNLD 641 >gi|325293012|ref|YP_004278876.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] gi|325060865|gb|ADY64556.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] Length = 706 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 449/710 (63%), Positives = 535/710 (75%), Gaps = 30/710 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS------------------- 41 M DDS DLFS LP +EK + + + +P A + + Sbjct: 1 MMDDSNDLFSGLPVAPNSETEKNEDTAKPVKAPVSAAANVNVQPKPAAVAAVTTPPPPAP 60 Query: 42 -----DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN Sbjct: 61 VSPSGDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANF 120 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV LD GFLTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHG Sbjct: 121 IEVHLDTEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHG 180 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALSD L V VAR ++ Q+FSRG P+ LE+ V N+RGTR+ F PDP+IF Sbjct: 181 VGVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRRGTRVRFHPDPQIF 240 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKTYLQT 275 GD A F+ AR+ +M +SKAYL G V+ WSCD + G PEK F+FPGGLK YL Sbjct: 241 GDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPAGGEIPEKAVFHFPGGLKDYLAA 300 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 L ++ EIF+G+TEK G H G +EWA+ W + +I SYCNTI T EGGTHE+G R Sbjct: 301 TLGKEFTVTREIFSGRTEKTGGH-GALEWAVTWYGGDTQIHSYCNTIPTPEGGTHEAGFR 359 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +ALT+G+K YAELTQNKRA I +DD+MISA G+LSVFIREPEF GQTK KL +++AQR Sbjct: 360 IALTKGLKNYAELTQNKRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRI 419 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VENALRDPFDHYL NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLAD Sbjct: 420 VENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLAD 479 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CSQN A ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNV SA EK+ NQQI D Sbjct: 480 CSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQIAD 539 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+QALGC TR++YREEDLRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI HL+L Sbjct: 540 LIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLA 599 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ I QG KS YA D+ H+ +++E K K+EI RFKGLGEM+A+QLKET MD Sbjct: 600 VPPLYVIRQGAKSAYARDDAHRAELMETVFK--GKKVEIGRFKGLGEMMAAQLKETTMDP 657 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRTLLRVEI+ + T+++++ LMGTKAD RF+FIQERA+F D++ Sbjct: 658 EKRTLLRVEIDDV--DFEGTREAVDNLMGTKADARFRFIQERAAFADNLD 705 >gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI] gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis str. CI] Length = 640 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17] gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4] gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4] gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17] Length = 640 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP + L+ + + GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E H K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|21228521|ref|NP_634443.1| DNA gyrase, subunit B [Methanosarcina mazei Go1] gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1] Length = 634 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 256/645 (39%), Positives = 372/645 (57%), Gaps = 21/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ + I+V+++ Sbjct: 7 YDASHIQVLEGLEAVRKRPSMYIGSTDGRGLHHLVYEVVDNSIDEALAGFCSEIDVTINP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 NG +TV+DNGRGIP++ HP KS LE+++T LHAGGKFD +TY++SGGLHGVG+SVVN Sbjct: 67 NGSVTVIDNGRGIPIDPHP-VHKKSALEVVMTILHAGGKFDKNTYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ V V+R + Q++ RG P S + + T+ TF+PD KIF F Sbjct: 126 ALSEWTEVEVSRDGKKYFQRYIRGKPESDVREIGTSDTTG-TKTTFKPDTKIFETT-DFQ 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 LL + A+L+ + + + E F + GG+ +++ + + + Sbjct: 184 YDILLNRLRELAFLNRGLIINLKDLRSP-----EGQAETFNYSGGIIEFVEYLNKKKQPL 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + ++ VE A+ + + S+ N I T EGGTH G + ALTR Sbjct: 239 HEKPIYFERQRDD---MVVEIAMQYTNGYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295 Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 Y + + K + DD+ I+SV + EP+F GQTKTKL + + + V++ + Sbjct: 296 NDYIKANKLSKEDEKLTGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLVT 355 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 D Y +NP A +L+ + R +K RE RK+A+ LPGKLADCS Sbjct: 356 DGLAEYFEENPKVANIILDKALLAQRAREAAKKARELTRRKSALEVSTLPGKLADCSNKN 415 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E++IVEGDSAGGSAKQ R+RS QA+LPLRGKILNV + KI N +++ L+ A+ Sbjct: 416 PAECEIYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITAI 475 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + E+ RY K+IIMTDADVDGAHI +LLLT F++ M LI+ ++++ PPL+ Sbjct: 476 GTGVSEDFDLENARYHKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPPLY 535 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 +I +G YA+ ++ L+E + G + I R+KGLGEM QL ET MD RTL Sbjct: 536 KIKKGKMDYYAYSDKELADKLKELGEKG---VAIQRYKGLGEMNPGQLWETTMDPESRTL 592 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V + + + LMG + + R FI+ A + D+ Sbjct: 593 LQVTLEDAIR----ADEIFRVLMGDEVEPRRNFIETHAKEVVDLD 633 >gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407] gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407] gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 642 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 5 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 65 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 183 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641 >gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 385/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP + L+ + + GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGET-DHTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYDFDTLATRMRELAFLNRNIKLIIEDKRENKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 + I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 APIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVII+TDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIITDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E H K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAHPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200] gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200] Length = 642 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 5 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 65 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 183 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641 >gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar seoulensis] Length = 632 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 381/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGG AKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 385/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ + ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 640 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 262/654 (40%), Positives = 385/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKEMQANSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVVIEEDDSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ + ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DRTGTVTRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTVYDFDILATRMRELAFLNRNIKLTIEDKRENKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGAKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ ++IL E K I R+KGLGEM +QL ET Sbjct: 532 VYIAQPPLFKVQQGKKIQYAYNEKELERILAELPAQ--PKPSIQRYKGLGEMNPAQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|254424108|ref|ZP_05037826.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335] gi|196191597|gb|EDX86561.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335] Length = 645 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 247/652 (37%), Positives = 373/652 (57%), Gaps = 16/652 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ I + Sbjct: 2 ANNYGAQQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHCTHITAA 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST-YEISGGLHGVGI 159 L+ +G +TV D+GRGIP + HP KS LE +LT LHAGGKF + Y++SGGLHGVG+ Sbjct: 62 LNADGSVTVTDDGRGIPTDIHP-TTGKSALETVLTVLHAGGKFGGDSGYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ + VTV R+ + +Q+F +G P+ L+ + GT++TF+PD IF Sbjct: 121 SVVNALSEWVEVTVWREGKVHTQRFEQGNPIGKLKTSKGSTK-TGTQVTFKPDATIFTHT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + + AYL+ V ++ + K P+ +++ GG++ Y++ Sbjct: 180 VEFDYDTIARRLRELAYLNAGVDITFTDYRLDLIKADKPQVSHYFYEGGIREYVEYINNE 239 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + ++ ++K G + + + + N I T +GGTH GL+ LT Sbjct: 240 KEPLHPDVIYVNSDKNGV-QVEAALQWCGDAFSDNLMGFANNIRTVDGGTHLEGLKTVLT 298 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + A + ++ ++ +++ ++SV + +PEF GQTKTKL + + + V+ Sbjct: 299 RTMNVIARKRKKRKDTESNMAGENIREGLTAVVSVKVPDPEFEGQTKTKLGNTEVRGIVD 358 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + YL NP A +LE I+ +K R+ V RK+ + LPGKL+DC Sbjct: 359 SLVGEALTEYLDFNPSVADAILEKAIQAFNAAEAAKKARDLVRRKSVLESSTLPGKLSDC 418 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N ++ L Sbjct: 419 SSRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSL 478 Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + D LRY ++ +MTDADVDGAHI +LLLTFFY+ DL++Q ++++ Sbjct: 479 ITALGLGIKGEDFAPDTLRYHRICLMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIA 538 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G Y + E+ Q ++ + K I RFKGLGEM+ QL +T M+ Sbjct: 539 CPPLYKLERGKNHTYCYSEKELQDGIDAMPTN--AKYNIQRFKGLGEMMPQQLWDTTMNP 596 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 RTL RVEI + LMG + R FI+ ++ D+ Sbjct: 597 ETRTLKRVEIED----AAEADRIFTVLMGDRVAPRRDFIETYGPRLNMADLD 644 >gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L] gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42] gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342] gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1] gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B) [Bacillus cereus E33L] gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342] gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42] gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1] Length = 640 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1] gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1] Length = 638 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 257/653 (39%), Positives = 389/653 (59%), Gaps = 21/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q +YD + I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 2 EQEQRQSYDENQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYCSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+VS++ + +TV DNGRGIPV H K + +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IKVSIEKDNSITVQDNGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS EL V V R I QKF +G+P L+ + + GT I F+PDP+IF Sbjct: 121 VGASVVNALSTELEVFVHRDGKIHYQKFEKGVPSGDLKVTGE-SDVTGTIIHFKPDPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ L + A+L+ +K ++ +K +++ GG+K+Y++ Sbjct: 180 TETTEYEYDILANRLRELAFLNRGIKIIIEDNRVEDKKNE------YHYEGGIKSYVEHL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 ++ ++ E + EK +VE A+ + + + S+ N I T EGGTHESG + Sbjct: 234 NRSKEVVHEEPIYIEGEKDNI---SVEIALQYNDGFASNLYSFANNIHTYEGGTHESGFK 290 Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 291 TALTRVINDYARKNHLYKESDANLSGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + F+ +L++NP+ A K+++ ++ ++ + RK+A+ LPGK Sbjct: 351 TITDALFSEHFESFLLENPVVARKVVDKGLMAARARLAAKKARELTRRKSALEVSSLPGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N + Sbjct: 411 LADCSSRDPKISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + RY+KV+IMTDADVDGAHI +LLLTFFY+ M +IE ++ Sbjct: 471 VRAMITALGTGIGEDFDISKARYQKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I QG K Y + ++ ++ L + K I R+KGLGEM A+QL ET Sbjct: 531 YIAQPPLYQIKQGKKIEYVYSDKQLEEALAQMPAQPKPG--IQRYKGLGEMNATQLWETT 588 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V + + + ++ LMG K + R FI++ A+++ ++ Sbjct: 589 MDPEYRTLLQVSLEDAI----EADETFEMLMGDKVEPRRNFIEDNAAYVKNLD 637 >gi|120437084|ref|YP_862770.1| DNA gyrase subunit B [Gramella forsetii KT0803] gi|117579234|emb|CAL67703.1| DNA gyrase subunit B [Gramella forsetii KT0803] Length = 646 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 257/661 (38%), Positives = 387/661 (58%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ NY A SI+ LEG+E VRMRP MYIG T + LHHL EV+DN++DE +AG+ Sbjct: 1 MSEEAKKHNYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V+++ + +T DNGRGIP++ H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DNIKVTINEDNSITTEDNGRGIPIDLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L V R ++ Q++ G PL P++ + GT +TF+PDP Sbjct: 120 HGVGVSCVNALSEHLTAIVFRDGQVWQQEYELGKPLYPVKPTGET-ELSGTIVTFKPDPS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + AYL+ ++ + + E G ++F+ GLK +++ Sbjct: 179 IFTQTLEYNYDTLASRMRELAYLNKGIRISLTDKR-NKEDNGEFVHDDFHSEEGLKEFIR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR I ++ + + EK VE A+ + E Y N I T EGGTH SG Sbjct: 238 FLDGNREPIIGDVISMEGEKNDIP---VEVAMVYNTSFSENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTTTLKKYADSSGLLDKVKFEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + ++YL +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTVMSVGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A S ++ +N Sbjct: 415 GKLSDCSDQDPEQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMSHRVFDN 474 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KV+IM DADVDG+HI +L+LTFF++ M + Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHIETLILTFFFRYMKE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE H+++ +PPL+ + +G K YA E+ + +I E + G ++I R+KGLGEM A Sbjct: 535 LIENGHIYIATPPLYLVKKGQKKRYAWSEKERDEIAESYS----GGVQIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD R L +V I+ + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMDPEFRILRQVNIDNGG----EADRIFSMLMGDEVPPRREFIEKNAKYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|229542310|ref|ZP_04431370.1| DNA gyrase, B subunit [Bacillus coagulans 36D1] gi|229326730|gb|EEN92405.1| DNA gyrase, B subunit [Bacillus coagulans 36D1] Length = 641 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 382/648 (58%), Gaps = 20/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + I V + Sbjct: 9 QSYGAEQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSIDEALAGFCDEINVFI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 69 EKDNSITVKDNGRGIPVGIQEKV-GRPAVEVIMTILHAGGKFGGGGYKVSGGLHGVGASV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS EL V V R I+ QK+ RG P L+ + ++ GT F+PDP+IF + Sbjct: 128 VNALSTELDVYVHRDGHIYYQKYRRGKPAFDLKIIGET-DRTGTTTHFKPDPEIFTETTE 186 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L+ +K +E P K+E+++ GG+K+Y++ ++ Sbjct: 187 FDFDILTTRLRELAFLNKGIKITIEDKREK-----NPRKQEYHYEGGIKSYVEHLNRSKE 241 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ E + EK G TVE ++ + + I S+ N I T EGGTHESG + ALTR Sbjct: 242 VLHKEPIYVEGEKDGI---TVEVSLQYNDGFASNIYSFANNIHTYEGGTHESGFKTALTR 298 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ + Sbjct: 299 VINDYARKNNLIKENEANLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDA 358 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457 + F+ ++++NP A K++E + + R+ +K RK+A+ LPGKLADC+ Sbjct: 359 VFSETFEKFMMENPQVARKIVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCT 418 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 419 SRDPAESELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTII 478 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY KV+IMTDADVDGAHI +LLLTFFY+ M LI+ ++++ P Sbjct: 479 TALGTGVGEDFDISKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQP 538 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG + Y + + +++L K I R+KGLGEM QL ET M+ Sbjct: 539 PLYKVQQGKRVEYVYSDRGLEELLNTLPAQ--PKPAIQRYKGLGEMNPEQLWETTMEPAN 596 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V ++ + + + LMG K + R FI+E A ++ ++ Sbjct: 597 RTMLQVSLDDAI----EADGTFEMLMGDKVEPRRNFIEENAIYVKNLD 640 >gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 632 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAR 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|218961619|ref|YP_001741394.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans] gi|167730276|emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans] Length = 632 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 377/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y AS+I++L+GLE VR RP MYIGGT E+ LHHL EVIDN++DE +AGY + I + Sbjct: 3 SSTYTASNIKVLKGLEAVRKRPAMYIGGTSERGLHHLVYEVIDNSIDEALAGYCDEIICT 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + G + V DNGRGIPV+ K ++++LT LHAGGKFD+ +Y+++GGLHGVG+S Sbjct: 63 ITTEGNIRVEDNGRGIPVDIQ-KDMGVPAVQVVLTVLHAGGKFDDKSYKVAGGLHGVGVS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V + + + +F RG+P++ L+ GT +TFRPDP IF Sbjct: 122 VVNALSEFLEVNIFKDGKEYFMRFERGLPVTELQVLGDTNK-TGTVVTFRPDPLIFETT- 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L + A+L+ ++ ++ +F + GG+K++++ +N+ Sbjct: 180 EFSFDYLTSRLRELAFLNSGLRIILKDERS-------GRVHDFKYEGGIKSFVEYLNQNK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + K+G E A+ + E I S+ N I T EGGTH SG + LT Sbjct: 233 KPLFPNPIYISSVKEG---MEFEVALQYNEGYQENIFSFANNINTTEGGTHLSGFKSGLT 289 Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + Y + + +D+ ++S+ I P+F GQTKTKL + + + V Sbjct: 290 RAVNTYIKNADLLKNEKVSPSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVN 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 +A+ + Y ++P EA + I + R RK RE RKT + LPGKLADC Sbjct: 350 SAVYEKLMEYFEEHPAEAKNITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQ R+RS QA+LPL GK+LN A +K+ NN +I + Sbjct: 410 TLSDPEKTELFLVEGDSAGGSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG ++ LRY K+IIM DADVDG+HIA+LL+TFFY+ M +IE+ L++ Sbjct: 470 ILALGAGIGQEFDISKLRYHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAM 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ +G + VY ++EE + K + EF + G + + R+KGLGEM A QL ET +D Sbjct: 530 PPLFQVRKGKQKVYVYNEEERDKAIREFGEKG---VLVQRYKGLGEMNAEQLWETTLDPK 586 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++ ++++ + + LMG + + R +FIQE A ++ ++ Sbjct: 587 NRKMIAIKMDDAI----EADRMFTILMGDEVEPRREFIQENARYVKNLD 631 >gi|331092116|ref|ZP_08340947.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA] gi|330402317|gb|EGG81888.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA] Length = 638 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 260/650 (40%), Positives = 381/650 (58%), Gaps = 19/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I VS Sbjct: 2 STEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDTIYVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INKDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS+ L V + + I+ Q++ RG + LE K GT++TF PD +IF + Sbjct: 121 VVNALSEWLEVEIYKDGKIYKQRYERGHVMYKLEVTGTCEPEKTGTKVTFLPDKEIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L + + A+L+ +K + ++ ++ F++ GG+K ++ ++ Sbjct: 181 I-FDYDTLKQRFREMAFLTRNLKIILADER-----PEERIEKTFHYEGGIKEFVSYLNKS 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 ++ + +I + EK G VE A+ + + T + N I T EGGTH G R AL Sbjct: 235 KTPLYEQIIYCEGEKDGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNAL 291 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ V Sbjct: 292 TKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIVSVKIGDPQFEGQTKQKLGNSEARGAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 +N + +L QNP A +E V+ + R+ + RK+A+ + LPGKLAD Sbjct: 352 DNIVSTQLQIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALETMSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 412 CSDKDPANCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKA 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L Sbjct: 472 MITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLA 531 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ ++ +IL E + G K I R+KGLGEM A QL ET M Sbjct: 532 QPPLYKLEKNKKVWYAYSDDELNQILTEVGRDGNNK--IQRYKGLGEMDAEQLWETTMSP 589 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 590 EHRVLLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 637 >gi|153815427|ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756] gi|317500889|ref|ZP_07959101.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|331089209|ref|ZP_08338111.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA] gi|145847286|gb|EDK24204.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756] gi|316897769|gb|EFV19828.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|330405761|gb|EGG85290.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA] Length = 645 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 258/657 (39%), Positives = 378/657 (57%), Gaps = 19/657 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 ++ Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 2 GASSTEFDAEYGADQIQILEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNSVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I+V+++ + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGG Sbjct: 62 CDEIQVNINKDNSVTVCDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 LHGVG SVVNALS+ L V + I+ Q++ RG + L+ + ++ GT +TF PD Sbjct: 121 LHGVGASVVNALSEWLEVEIYHDGQIYKQRYERGKVVYKLKVVGECEPDRTGTTVTFFPD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF D FD L + + A+L+ +K + + F++ GG+K + Sbjct: 181 AEIFDDTV-FDYDTLKQRFREMAFLTKGLKIVLRD-----WRGEELREHTFHYEGGIKEF 234 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHE 331 + ++++ + +I + K G VE A+ + E T + N I T EGGTH Sbjct: 235 VTYLNKSKTPLYEQIIYCEGMKDGV---AVEIAMQHNDSYSENTYGFVNNITTPEGGTHI 291 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT+ YA + + ++ DD+ I+SV I +P+F GQTK KL + Sbjct: 292 EGFRGALTKTFNDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGN 351 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 +A+ V + L + +L QNP A +E V+ + R+ + RK+A+ + Sbjct: 352 SEARGAVNSILSTQLEIFLEQNPSVAKITVEKSVMAQRAREAARKARDLTRRKSALEGMS 411 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI Sbjct: 412 LPGKLADCSDKDPVNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIY 471 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI+ Sbjct: 472 ANAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIK 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + +++L PPL+++ + K YA+ +E +IL E + K I R+KGLGEM A QL Sbjct: 532 EGYVYLAQPPLYKLEKNKKVWYAYSDEELNQILTEVGRDSNNK--IQRYKGLGEMDADQL 589 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R LLRV +++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 590 WETTMDPEHRILLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVKNLD 644 >gi|225028834|ref|ZP_03718026.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353] gi|224953830|gb|EEG35039.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353] Length = 643 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 262/656 (39%), Positives = 387/656 (58%), Gaps = 19/656 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + SA+ Y A I+ILEGLE VR RPGMYIG T K LHHL E++DNA+DE +AG+ Sbjct: 2 SEEQISAAQEYGADQIQILEGLEAVRKRPGMYIGSTSSKGLHHLVYEIVDNAVDEALAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + ++V ++ + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGG Sbjct: 62 CDTVKVYINEDNSITVRDNGRGIPVGINKK-KGIPAVEVVFTILHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS L V + + I+ Q++ RG + PL+ +KRGT + F PDP Sbjct: 121 LHGVGASVVNALSTWLEVDIFHEGKIYRQRYERGKVMYPLKIVGDT-DKRGTEVRFLPDP 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + FD + L + + A+L+ +K + F++ GG++ Y+ Sbjct: 180 TIFEETV-FDFSVLKQRLREMAFLTKGLKIVLKDKRPEENVALT-----FHYEGGIREYV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ ++ ++ + +K VE A+ + + S+ N I T EGGTH + Sbjct: 234 EYLNKSKEVLYPQVIYCEGKKGDV---VVEVALQHNDSYNEGVYSFVNNITTPEGGTHLA 290 Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALT+ YA + + ++ DD+ V I+S+ I EP+F GQTK KL + Sbjct: 291 GFRSALTKTFNDYARKNKLLKDSEQNLTGDDIREGLVAIVSIKIPEPQFEGQTKQKLGNS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 +A+ V++ + + ++L QNP A + E V+ + R+ + RK+A+ + L Sbjct: 351 EARGAVDSVVSEQLTYFLEQNPNVAKIICEKAVLAQRAREAARKARDLTRRKSALDGMSL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV + +KI Sbjct: 411 PGKLADCSDKDPQNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILV 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M DLI++ Sbjct: 471 NNEIRAMITAFGTGIHEDFDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKE 530 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H++L PPL+++ + K YA+ +E KIL + + G K I R+KGLGEM ASQL Sbjct: 531 GHVYLAQPPLYKVEKNKKVWYAYSDEELNKILTDIGRDGNNK--IQRYKGLGEMDASQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD KR LLRV ++ D + + + + LMG + + R +FI+ A ++ ++ Sbjct: 589 ETTMDPEKRILLRVNMDDD--AASELDMTFDTLMGDRVEPRREFIEANAKYVQNLD 642 >gi|194332868|ref|YP_002014728.1| DNA gyrase subunit B [Prosthecochloris aestuarii DSM 271] gi|194310686|gb|ACF45081.1| DNA gyrase, B subunit [Prosthecochloris aestuarii DSM 271] Length = 644 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 271/660 (41%), Positives = 382/660 (57%), Gaps = 25/660 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 SAS +Y A++I+IL+G+E VR RP MYIG + + LHHL E++DN++DE +AG Sbjct: 2 SETQTPSASSSYLATNIQILDGIEHVRKRPAMYIGDINVRGLHHLIYEIVDNSIDETLAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 Y + IE+SL+ +G +TV DNGRGIPV+ HP+ KS LE+++T + AGGKFD Y++SG Sbjct: 62 YNDTIEMSLNDDGSVTVSDNGRGIPVDMHPQ-KKKSALELVMTVIGAGGKFDKGAYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS+ V V+R ++ Q++ RG+P ++ + +K GT+ TF PD Sbjct: 121 GLHGVGASVVNALSEWCEVEVSRDGKVWYQRYHRGVPQCEVKIIGET-DKTGTKTTFMPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF F ++ + A+L+ +K + E F++ GG+K + Sbjct: 180 ASIFKT-TEFRKDVIIDRMRELAFLNSVLKIVVKDTDDSEET--------FHYEGGIKEF 230 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + NR + E E+ T VE A+ + + + SY N I T EGGTH Sbjct: 231 VTYTDHNRIALVKEPVYLYGERDTT---VVEIALQYNDSYQENVFSYVNNINTHEGGTHM 287 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR + YA+ + + + DD I+SV + EP+F GQTKTKL + Sbjct: 288 TGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGN 347 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + Q VE+ + + +L NP ++E V + R RK +E RK+ + Sbjct: 348 SETQSIVESIVNEQLAEFLESNPNVLKTIIEKVKSAALSRDAARKAKELTRRKSVLESTG 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ Sbjct: 408 LPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKML 467 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ ALG + LRY K+IIMTDADVDGAHI +LLLTFF++ M LI Sbjct: 468 ENEEIKTIILALGTNFGEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLI 527 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLA 625 E +F+ PPL+ I G + YA DE+ + I+E KK KGK I I R+KGLGEM Sbjct: 528 EAGKVFIAQPPLYLIKAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNP 587 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD R+LL+V + + + + LMG K D R +FI++ A ++ + Sbjct: 588 EQLWSTTMDPEHRSLLQVTVENAM----EADQVFSTLMGDKVDPRREFIEKNARYVRRLD 643 >gi|255659815|ref|ZP_05405224.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544] gi|260847890|gb|EEX67897.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544] Length = 688 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 265/706 (37%), Positives = 388/706 (54%), Gaps = 40/706 (5%) Query: 1 MTDDSI----DLFSTLPPQSQGSSEKLKKSGEIPDS-------------PAFANQSASDN 43 M +D+ DL T Q + + K+ ++ D + + + Sbjct: 1 MANDNDKKSIDLTLTPDDQPEAAPAPQKEVEDLTDKDLDTTGVEIHTDESSAEVTAVEAD 60 Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I+ILEGLE VRMRPGMYIG T E+ LHHL EV+DN++DE +AGY + I+V++ Sbjct: 61 YGAEQIQILEGLEAVRMRPGMYIGSTSERGLHHLVYEVVDNSIDEALAGYCDHIDVTIHK 120 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TVVDNGRGIPV+ H K +E++LT LHAGGKF Y++SGGLHGVG+SVVN Sbjct: 121 DNSITVVDNGRGIPVDMHE--SGKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVSVVN 178 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + V V R I+ F RG+ PL TR+ F PDP+IF + Sbjct: 179 ALSTSMEVQVKRDGKIYEIAFERGVTTKPLTVVGTTTETG-TRVHFMPDPEIFSVTT-YS 236 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + ++L+ + ++ E+F+F GG+ ++++ + ++ Sbjct: 237 YETLRHRLRELSFLNHGITIGLHDER-----VEPVRSEQFHFDGGISSFVEHLNRKKEVL 291 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + E K T VE A+ + + I S+ N I T+EGGTH +G ++ALTR Sbjct: 292 NPEPIYFNGVKDDT---VVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKLALTRAA 348 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +A + ++ DD+ ++S+ IREP+F GQTKTKL + + + V++ + Sbjct: 349 NDFARKQGILKDKDSNLSGDDVREGLTCVISLKIREPQFEGQTKTKLGNSEVRGIVDSIV 408 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + Y +NP ++++ I + R RK RE RK A+ LPGKLADCS Sbjct: 409 TEGLSEYFDENPAITKRIIDKAIMAARAREAARKARELTRRKNALEVSSLPGKLADCSVK 468 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I ++ A Sbjct: 469 DPEQAEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITA 528 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + RY K+IIMTDADVDGAHI +LLLTF Y+ M LIE H+++ PPL Sbjct: 529 FGTGISEDFDLSKRRYGKIIIMTDADVDGAHIRTLLLTFLYRYMKPLIEHGHVYIAQPPL 588 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 ++I +G K Y + ++ K L+E + G + + R+KGLGEM QL ET MD RT Sbjct: 589 YQIRKGKKHWYTYSDDELSKKLDEVGRDG---VTVQRYKGLGEMNPEQLWETTMDPEGRT 645 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +LRV ++ ++ + LMG K + R +FI+E A + ++ Sbjct: 646 MLRV----EMEDAEEADELFTILMGDKVEPRRQFIEENAKLVRNLD 687 >gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar ostriniae] Length = 632 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K L+HL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLYHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K+ I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQ--PKLGIQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205] Length = 653 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 257/659 (38%), Positives = 371/659 (56%), Gaps = 16/659 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V+++ +G +V DNGRGIP + HPK KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 NEIRVAIEEDGSCSVSDNGRGIPTDVHPK-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SVVNALS+ + V V RQ Q+F RG P+ L + ++ GT + F+PD Sbjct: 121 HGVGVSVVNALSEWVEVVVYRQGKEHRQRFERGAPIGTLAIEPAADASRTGTTVRFKPDL 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLKTY 272 +IF FD L + AYL+G VK + ++ A +E +++ GG+K Y Sbjct: 181 EIFTVGIEFDYNTLSARLRELAYLNGGVKIVFRDERPAARNAEGEAHEEIYHYEGGIKEY 240 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + +I +EK G + + I + N I T +GGTH Sbjct: 241 VAYMNAEKDALHPDIIYVNSEKDGV-QIEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + +PEF GQTKTKL + Sbjct: 300 GLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNT 359 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V++ + + YL NP +LE I+ R+ RE V RK+ + L Sbjct: 360 EVRGIVDSLVGEALGEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + ++ LRY +++IMTDADVDGAHI +LLLTFFY+ L+E Sbjct: 480 NTEIQALITALGLGIKGEEFDDKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLVE 539 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E + +E F + K I RFKGLGEM+ QL Sbjct: 540 GGYIYIACPPLYKVERGKNHTYCYNEADLKTTIEGFGE--KANFTIQRFKGLGEMMPKQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 ET MD + R + RVEI + LMG K R +FI+ ++ +D + Sbjct: 598 WETTMDPSTRMMKRVEI----ADAAEADRIFTILMGDKVAPRREFIETHSAELDLAQLD 652 >gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017] gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017] Length = 646 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 15/650 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ I + L+ Sbjct: 4 NYSADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCKHIHIYLN 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D+GRGIP + HP KS LE ++T LHAGGKFD +Y++SGGLHGVGISVV Sbjct: 64 EDGSVRVTDDGRGIPTDKHP-TTGKSALETVMTVLHAGGKFDGDSYKVSGGLHGVGISVV 122 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ + V R + +Q+F RGIP S L + R + GT ITF PD IF F Sbjct: 123 NALSEWVEAKVWRNGKVHTQRFERGIPKSELVVEPTDRKESGTAITFLPDDTIFTVTTEF 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ V+ + ++ + P+ E + + GG+K Y+ ++ Sbjct: 183 DYKTLASRLRELAYLNAGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKEP 242 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 I E + E+ + V + + + N I T +GGTH GL+ LTR + Sbjct: 243 IHEECIYVEGERNNV-QVEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTM 301 Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 A + ++ + + ++SV + EPEF GQTKTKL + + + V++ + Sbjct: 302 NSLARKRSKLKDGDSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLV 361 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + YL +P A ++E ++ R+ RE V RK+ + LPGKLADCS Sbjct: 362 GEVLTEYLDFHPNVADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ A Sbjct: 422 DPSTSEIYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITA 481 Query: 520 LGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 LG + + + LRY ++I+MTDADVDGAHI +LLLTFFY+ +LI+Q ++++ PP Sbjct: 482 LGLGIKGEEFDVSQLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPP 541 Query: 579 LFRITQGTKSVYAHDEEHKQKILE-EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L++I +G Y + + Q +++ EF + I RFKGLGEM+ +QL +T M+ Sbjct: 542 LYKIERGRSHYYCYSDRELQNLVQHEFPANAN--YTIQRFKGLGEMMPTQLWDTTMNPET 599 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RTL +++I + LMG + R +FI+ + ++ Sbjct: 600 RTLKQIDIED----AAEADRIFTILMGDRVAPRREFIETHGPRLNLAELD 645 >gi|313884315|ref|ZP_07818078.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620468|gb|EFR31894.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 639 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 245/655 (37%), Positives = 365/655 (55%), Gaps = 21/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y+A I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY Sbjct: 1 MSEPIKNNGYNADQIQVLEGLEAVRKRPGMYIGTTSIDGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + +TV+DNGRGIPV+ K + E + T LHAGGKF N +Y++SGGL Sbjct: 61 DHIEVFIEADNSITVIDNGRGIPVDIQSK-TGRPAAETVYTVLHAGGKFGNDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG +VVNALS L + + R+ I +F RG+ LE + GT++ F PD Sbjct: 120 HGVGAAVVNALSTHLTLEIFREGKIHHLEFERGLVTKELEVIGET-ELVGTKVNFVPDGT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF D F RL Q A+L+ ++ +E + + F++ GGLK++++ Sbjct: 179 IFTDTTDFKYERLKDRIQELAFLNRGLRISLEDKREERQAS-----DSFFYEGGLKSFIE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333 + + E + E VE A+ + + S+ N I T EGG HESG Sbjct: 234 HLNHAKKPLHEEPIFLEGEMDDI---AVEIALQYTDSYSTNLLSFANNIHTHEGGMHESG 290 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + ++ +D I+SV +P+F GQTKTKL + + Sbjct: 291 FKTALTRIINDYARNNNLLKDSDDNLSGEDTREGLTAIISVKHPDPQFEGQTKTKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 + V+ F+ +L++NP A ++E ++ +R + +K+ + LP Sbjct: 351 VRTIVDRLFTAEFNTFLLENPRVAKIIVEKGILAARARSAAKRAREMTRKKSGLEIANLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N Sbjct: 411 GKLADCSSKEAEKCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKATMDRILAN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I + A+G S++ ++RY K+IIMTDADVDGAHI +LLLT ++ M LIE Sbjct: 471 EEIRSMFTAMGTGFGSEFDVNNVRYHKLIIMTDADVDGAHIRTLLLTLIFRYMRPLIEAG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++ G K Y +E K K + + ++ R+KGLGEM QL E Sbjct: 531 YVYIAQPPLYQVKVGKKETYLDTDEELNKWR---KANPDARYKLQRYKGLGEMDYEQLWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R LLRV++ + ++ LMG + R FI++ A ++ ++ Sbjct: 588 TTMNPENRRLLRVKVED----AEVADQVMSMLMGEDVEPRRAFIEDNAVYVQNLD 638 >gi|167043616|gb|ABZ08310.1| putative DNA gyrase B [uncultured marine microorganism HF4000_APKG2M17] Length = 655 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 264/660 (40%), Positives = 380/660 (57%), Gaps = 23/660 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + A AS+ Y AS+I++LEGLE VR RP MYIG + LHHL +EV+DN++DE + Sbjct: 6 KARCMAENEASNQYGASNIQVLEGLEAVRKRPAMYIGDIGPRGLHHLVNEVVDNSIDEAL 65 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ + I+V + +G +++ DNGRGIPV+ HP +S LE+++TTLHAGGKFD TY++ Sbjct: 66 AGHCDAIDVIIHEDGSISIKDNGRGIPVDMHP-IEKRSALEVVMTTLHAGGKFDKDTYKV 124 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRIT 208 SGGLHGVG+S VNALS++L ++ R ++ Q F G P+ + K +++ GT + Sbjct: 125 SGGLHGVGVSCVNALSEKLEASIWRDGALWKQTFEYGDPVGAVAKVRDMKDGESTGTLVR 184 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD IF F RL + AYL+ V +E ++E++F GG Sbjct: 185 FWPDGGIFQTT-EFRFDRLADRLREMAYLNRHVYISIEDLREA-----EGLRDEYHFEGG 238 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + +++ E R+ I E E VE A+ + + S+ N I T EG Sbjct: 239 IIEFVEYLDEARTPIHDETIYIADED---AEVPVEMAMRYNSGYTENVLSFVNNINTHEG 295 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH SG R ALTR +K YA+ + + + DD ILS+ + EP+F GQTKT Sbjct: 296 GTHVSGFRRALTRTLKSYADKNNLLKNVKVDLSGDDFREGITVILSIKVAEPQFEGQTKT 355 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + + Q VE+ + +L +P E+ +++E VI +E R RK RE V RK A Sbjct: 356 KLGNSEVQGAVESLVFLKLGEWLDDHPKESKRIVEKVIIAAEARAAARKARELVQRKNAF 415 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS A E+++VEGDSAGGSAKQAR+R QA+LPLRGKILNV A Sbjct: 416 SSGGLPGKLADCSSKNAEECEIYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARL 475 Query: 505 EKIRNNQQIMDLVQALGCRT---RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 ++I N++I ++V ALG + E LRY K+I+MTDADVDGAHI +LLLTF Y+ Sbjct: 476 DRILANEEIRNIVTALGTGLGAGEDDFDPEKLRYHKIIVMTDADVDGAHIRTLLLTFLYR 535 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M+ L+E ++++ PPL++ +G + Y ++ ++++E K+ I R+KGLG Sbjct: 536 HMHALVEAGYIYIAQPPLYKAKKGKQEEYCWTDKQLKEVIERIGGDSPEKVTIQRYKGLG 595 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM QL +T M+ R L R+ I+ + LMG + R KFI+ A + Sbjct: 596 EMNPDQLWDTTMNPETRLLQRITIDD----AAAADRIFSTLMGDAVEPRRKFIERNAKYA 651 >gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar higo] gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar kenyae] gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar azorensis] gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar zhaodongensis] Length = 632 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676] gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676] Length = 640 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar roskildiensis] Length = 632 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIP+ K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPIGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNERYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM 16841] gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM 16841] Length = 640 Score = 634 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 262/651 (40%), Positives = 380/651 (58%), Gaps = 19/651 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY IEV Sbjct: 3 TENEYGGDQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSVDEALAGYCKNIEV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +++ + +TV D+GRGIPV+ + K KS LE++ T LHAGGKF Y++SGGLHGVG Sbjct: 63 TINEDNSITVEDDGRGIPVDINHKA-GKSALEVVYTVLHAGGKFGGGGYKVSGGLHGVGA 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS +L V V R+ ++ Q + G P P++ + +K GT++TF PD IF + Sbjct: 122 SVVNALSTKLKVEVYREGKVYFQSYKIGKPDEPVKVIGECGEDKHGTKVTFWPDGSIFEE 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L + + A+L+ ++ + +E + +F++ GG+K ++ + Sbjct: 182 TV-FDYDTLKQRLRETAFLTKGLRIVLTDLRENPVRTY-----DFHYAGGIKEFVTYLNK 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E+ + G + VE A+ + S+ N I+T EGGTH +G R A Sbjct: 236 SKEALYPEVIYCEGSGNGVY---VEVAMQHNDSYNELTLSFVNNIITPEGGTHLAGFRNA 292 Query: 338 LTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+ YA + + DD+ I+SV I EP+F GQTK KL + +A+ Sbjct: 293 LTKTFNAYARANKLLKDNEPALTGDDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGA 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + + ++L QNP A + E ++ + R+ + RKTA+ + LPGKLA Sbjct: 353 VDSIVSEQLTYFLEQNPTVAKTICEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLA 412 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 413 DCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIK 472 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K+IIMTDADVDGAHI++L+LTF Y+ M DLI++ H++L Sbjct: 473 AMITAFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLMLTFLYRFMPDLIKEGHVYL 532 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I + YA+ ++ IL E + G K I R+KGLGEM A QL ET MD Sbjct: 533 AQPPLYKIEKNKNVWYAYSDDELNAILTEIGRDGNNK--IQRYKGLGEMDAEQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR L RV I+ S + + LMG K + R +FI+E A ++ ++ Sbjct: 591 PEKRILKRVMIDD--ESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLD 639 >gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134] gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264] gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185] gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15] gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4] gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550] gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W] gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876] gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171] gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579] gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134] gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264] gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876] gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W] gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550] gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4] gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15] gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185] gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171] Length = 640 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar thompsoni] Length = 632 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++++ E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLSYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901] gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 635 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 266/646 (41%), Positives = 381/646 (58%), Gaps = 25/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I++L+GLE VR RP MYIG T+EK LHHL EV+DN++DE +AG+ N IEV + Sbjct: 10 YGAEEIQVLKGLEGVRKRPAMYIGSTNEKGLHHLVYEVVDNSIDEALAGFCNRIEVIIHK 69 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV DNGRGIPV+ HP+ K +E++LT LHAGGKF Y++SGGLHGVG+SVVN Sbjct: 70 DGSITVADNGRGIPVDIHPEV-GKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVVN 128 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V + R ++ QKFSRG P++ L+ K ++ GT ITF+PD +IF F+ Sbjct: 129 ALSEWLEVRIKRDGNLYYQKFSRGEPITELKIIGKSKS-TGTIITFKPDAEIFETV-EFN 186 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L K +YL+ VK ++ E E F GG+K YL+ +N+ + Sbjct: 187 YDTLAKRLLELSYLNKNVKIILKDERINKE-------EIFEHSGGIKDYLKYLNKNKEPL 239 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 I+ K + + VE A+ +C I S+ N I T EGGTHE G + ALTR I Sbjct: 240 HKIIYFEKEKDEVV----VEVALQYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVI 295 Query: 343 KKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA+ + ++ +D+ I+SV + +P+F GQTKTKLV+ + + V++ + Sbjct: 296 NDYAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIV 355 Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 D YL +NP KL+ + R+ + RKTA+ LPGKLADCS+ Sbjct: 356 SDYLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEK 415 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 EL++VEGDSAGGSAKQ R+R QA+LPLRGKILNV + +KI N++I ++ A Sbjct: 416 DPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITA 475 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + E RY ++IIMTDADVDGAHI +LLLTFFY+ + LIE ++++ PPL Sbjct: 476 LGTGVDKDFDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPL 535 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ +G Y + ++ ++ L E + G + I R+KGLGEM QL ET M+ RT Sbjct: 536 YKVKKGKLEKYLYSDDELERYLNEIGREG---VTIQRYKGLGEMDPEQLWETTMNPETRT 592 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V + + LMG K + R +FI++ A + ++ Sbjct: 593 ILKVTLED----AAKADEIFTILMGDKVEPRREFIEKNAKLVRNLD 634 >gi|163868608|ref|YP_001609817.1| DNA topoisomerase IV subunit B [Bartonella tribocorum CIP 105476] gi|161018264|emb|CAK01822.1| topoisomerase protein [Bartonella tribocorum CIP 105476] Length = 688 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 432/691 (62%), Positives = 526/691 (76%), Gaps = 10/691 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF-----ANQSASDNYDASSIRILEGL 55 M+D++ DLFS L + K S A A + D+Y+A SIR+LEGL Sbjct: 1 MSDNNKDLFSVLNKAQSRVNTKESTLQSPMKSKAMISKKSAKNTQEDDYNALSIRVLEGL 60 Query: 56 EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115 EPVR+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ IEVSLD NG++TV DNGRG Sbjct: 61 EPVRLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADSIEVSLDRNGYITVTDNGRG 120 Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175 IPVENHP+ P+KSTLE+I+T LH+GGKFD Y+ +GGLHGVGISVVNALSD++ V VAR Sbjct: 121 IPVENHPQMPDKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVAR 180 Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235 + ++ Q+FSRGIP S LE V N+RGTR+ F PD +IFG+KA F+ ++ KM SKA Sbjct: 181 ERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSEIFGEKAAFNPEKIYKMACSKA 240 Query: 236 YLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 YL G VK WSCD I E IPEK F+FP GLK YL L++ ++SEIF+GKT++ Sbjct: 241 YLFGGVKIRWSCDPVILESVKNIPEKAVFHFPNGLKDYLLASLKDEYRVTSEIFSGKTQQ 300 Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 H G+VEWAIAW +P + SYCNTI T EGGTHE GLR AL RG+K YAEL NKRA Sbjct: 301 NNGH-GSVEWAIAWHGGDPCVQSYCNTIPTGEGGTHEIGLRQALLRGLKSYAELIGNKRA 359 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I SDD+MIS ILSVFI PEF GQTK +L +++AQR VENA+RDPFDH+L +P E Sbjct: 360 AIITSDDIMISTAAILSVFISNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLANSPQE 419 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 ATKLL+WVIER+EER+RRR+ RE++RKTA+RKLRLPGKLADCSQN A G ELFIVEGDSA Sbjct: 420 ATKLLDWVIERAEERVRRRQDREISRKTAVRKLRLPGKLADCSQNHAAGAELFIVEGDSA 479 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQARNR+NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE+DLR Sbjct: 480 GGSAKQARNRANQAILPLRGKILNVASAAHEKMNSSQTISDLILALGCGTRSKYREKDLR 539 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 YE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K YA D+ Sbjct: 540 YERIIIMTDADVDGAHIASLLITFFFQEMPDLIHQGHLYLAVPPLYRISQGGKVAYARDD 599 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 HK ++L+ + GK KIEI RFKGLGEM A QLKET M KRTLLRV I D +++ Sbjct: 600 IHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DAVEMQE 656 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+ ++ LMGTK + RF+FIQE ++F ++ Sbjct: 657 TKKTVESLMGTKPEARFRFIQENSTFASNLD 687 >gi|15965186|ref|NP_385539.1| DNA topoisomerase IV subunit B [Sinorhizobium meliloti 1021] gi|307309200|ref|ZP_07588871.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C] gi|307321530|ref|ZP_07600925.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83] gi|15074366|emb|CAC46012.1| Probable topoisomerase IV subunit B [Sinorhizobium meliloti 1021] gi|306892837|gb|EFN23628.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83] gi|306900346|gb|EFN30962.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C] Length = 686 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 442/689 (64%), Positives = 542/689 (78%), Gaps = 11/689 (1%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKS-----GEIPDSPAFANQSASDNYDASSIRILEGLEP 57 DDS DLFS +P Q + + +K G PA S +YDAS+I +LEGLEP Sbjct: 2 DDSSDLFSAMPQQPKPADAAPRKPAAPAAGNEASRPAPKTSDGS-DYDASAIEVLEGLEP 60 Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V+LD +G+LTV DNGRGIP Sbjct: 61 VRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVNLDADGYLTVTDNGRGIP 120 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 VENHPKFP KSTLE+++T LHAGGKFD YE SGGLHGVG+SVVNALSD+L V VAR Sbjct: 121 VENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVARNR 180 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 ++ Q+FSRGI LE V N+RGTR+ F PDP+IFG A F+ ARL +M +SKAYL Sbjct: 181 RLYRQRFSRGIAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHARFEPARLFRMARSKAYL 240 Query: 238 SGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296 G V+ WSCD + E IP++ F+FPGGLK YL L ++ EIF GK+EK G Sbjct: 241 FGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSG 300 Query: 297 THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 H G++EWA+ W + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA Sbjct: 301 GH-GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAI 359 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +DD+MISA G+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL NP EA Sbjct: 360 VTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLADNPAEAA 419 Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 KLL+WV+ER+EER+RRRK++EV+RKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGG Sbjct: 420 KLLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGG 479 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DLVQALGC TRS+YREEDLRYE Sbjct: 480 SAKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDLVQALGCGTRSKYREEDLRYE 539 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596 ++IIMTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+R++QG+K++YA D+ H Sbjct: 540 RIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLYLAVPPLYRLSQGSKTLYARDDAH 599 Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++++ + +G+GK+E+ RFKGLGEML +QLKET MD KRTLL+VEI+ + T+ Sbjct: 600 REELM-RTEFNGRGKVELGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDV--DFEGTR 656 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 D+++ LMGTKA+ RF+FIQERA F D++ Sbjct: 657 DAVDSLMGTKAEARFRFIQERAVFADNLD 685 >gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 640 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA+++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKIQQGKKIQYAYNDNELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44] gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44] Length = 640 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVAIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ + GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DHTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYDFDTLATRMRELAFLNRNIKLTIEDKRENKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELEKILSELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579] gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579] gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 642 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 5 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 65 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 124 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 183 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 237 LNRSKQPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 293 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 294 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 534 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641 >gi|217076995|ref|YP_002334711.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B] gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B] Length = 627 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 371/645 (57%), Gaps = 22/645 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I++L+GLEPVR RPGMYIG T + LHHL E++DN++DE + GY + I+V++ Sbjct: 2 DYSAQNIKVLKGLEPVRQRPGMYIGSTGKAGLHHLVYEIVDNSIDESLQGYCDTIKVTIF 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V DNGRGIPV+ HP+ KS LE+++TTLHAGGKF +Y++SGGLHGVG SVV Sbjct: 62 KDGSVEVEDNGRGIPVDIHPE-TGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R ++ Q++ RG P ++ + RGT + F+PDP IF F Sbjct: 121 NALSQWLEVEVHRDGKVYYQRYERGTPTCEVKIIGETEK-RGTTVRFKPDPLIFSTT-DF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D +L + A+L+ + + ++ E+ F++ GG+K ++ + Sbjct: 179 DTDTILMRLRELAFLNPNITIYFKDERNNTERT-------FHYTGGIKEFVSHLSKGSKS 231 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + ++ +K + ++ + + +I S+ N I T +GGTH +G + A TR + Sbjct: 232 LHEPVYISGEYEKIKVEVSFQYTDS---DFEKIYSFVNNIRTVDGGTHVTGFKSAFTRVV 288 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIR-EPEFAGQTKTKLVSLDAQRTVENALR 401 + T + S+ DD+ V ++SV + PEF GQTK+KL + + Q V +R Sbjct: 289 NELGRKTGQLKKDSLRGDDVREGMVAVISVLMSSTPEFEGQTKSKLGNEEVQEAVAKVVR 348 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460 + + N +++ +E + R + RE+ RK+ LPGKLADC Sbjct: 349 EKLLEFFETNENTLKIIIQKALEAKKAREAAKHAREMVKRKSVFGSSSLPGKLADCITKK 408 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV + K+ N+Q+ D++ AL Sbjct: 409 LEESELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQVRDIITAL 468 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + LRY K+IIMTDADVDGAHI +LLLT FY+ M +LIE+ +++ PPL+ Sbjct: 469 GVGIGDDFDIKKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIEEGRIYIAQPPLY 528 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++T G Y + +E + + + K EI R+KGLGEM QL ET MD N R L Sbjct: 529 KLTVGKDHYYFYSDEELEDFKKTLED---KKYEIQRYKGLGEMNPEQLWETTMDPNTRKL 585 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V I + + LMG+ + R +FI A + ++ Sbjct: 586 LKVSIED----AETADELFEMLMGSDTESRKEFIFRHALSVKEID 626 >gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L] gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L] Length = 635 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 260/650 (40%), Positives = 384/650 (59%), Gaps = 21/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG + I + Sbjct: 2 SKQEYGADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGNCSEIYI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 SL+ +G +TV DNGRGIPVE HPK STLE +LT LHAGGKF Y++SGGLHGVG+ Sbjct: 62 SLNDDGSVTVRDNGRGIPVEVHPK-TGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALSD + V+R ++ Q++ +G+ + LE ++ + + GT ITF PD IF + Sbjct: 121 SVVNALSDWVVAEVSRDGKLYRQRYEKGVTKTKLEVVDENQKESGTSITFMPDASIFDEV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + ++L+ +K + ++ EK F++ GGL Y++ Sbjct: 181 V-FSYETLEYRFRELSFLNRVIKIVFDDKRKGQEKSKT-----FHYTGGLIEYVKYLNRT 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +I + T+E A+ + + I S+ N I T EGG H SG + AL Sbjct: 235 KNTLHDQIIYVDKMQDD---CTIELALQYTDAYSENIYSFANNINTHEGGVHLSGFKTAL 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ + YA + ++ +D+ I+SV + EP+F GQTKTKL + + V Sbjct: 292 TKAMNDYARRNNILKDKDSNLTGEDIREGITAIVSVKLPEPQFEGQTKTKLGNTFMRGIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++ + ++ +NP A +++ + R +K RE RK+ + LPGKLAD Sbjct: 352 DSIANEEIGAFMEENPSVARVIIDKCLRSQRAREAAKKARELTRRKSVLETTSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ +E+F+VEGDSAGGSAK R+R+ QA+LPLRGKILNV + +KI ++++I + Sbjct: 412 CSEKSPEKSEIFLVEGDSAGGSAKGGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKN 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A GC + E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIEQ +++ Sbjct: 472 MITAFGCGIGEDFDEAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEQGYVYAA 531 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLF+I + K YA+ + +L+E + G EISR+KGLGEM A+QL ET MD Sbjct: 532 MPPLFKIKKAKKEYYAYTDRELGSLLDEVGRQGT---EISRYKGLGEMNANQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R L +V I + ++ + LMG K R +FI+E A ++ ++ Sbjct: 589 EQRILQQVTIEDAIF----ADETFSMLMGDKVAPRREFIEENAKYVRNLD 634 >gi|166032886|ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC 27755] gi|166027243|gb|EDR46000.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC 27755] Length = 643 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 253/656 (38%), Positives = 376/656 (57%), Gaps = 19/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ Sbjct: 1 MATEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGGL Sbjct: 61 DTIHVTINPDNSVTVTDNGRGIPVGINHK-SGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG SVVNALS L V + + ++ Q++ RG LE + K GT++TF PD Sbjct: 120 HGVGASVVNALSVWLEVEICHEGKVYRQRYERGKVAKKLEVIGECEPGKTGTKVTFLPDG 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF FD + L + + A+L+ +K ++ P ++ F++ GG+K ++ Sbjct: 180 EIFETTI-FDYSILQQRFREMAFLTKGLKIVLRDER-----PQEPIEKTFHYEGGIKEFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + + + +I + + +VE A+ + + N I T EGGTH Sbjct: 234 EYLNRSTTPLYEQIIYCEG---IVNNVSVEVAMQHNDSYNENSYGFVNNITTPEGGTHIV 290 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALT+ YA + + ++ +D+ I+SV I +P+F GQTK KL + Sbjct: 291 GFRNALTKTFNDYARKNKLLKDNEPNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 +A+ V+N + + +L QNP A +E V+ + R+ + RK+A+ + L Sbjct: 351 EARGAVDNVVSEQLQIFLEQNPQVAKVTVEKSVMAQRAREAARKARDLTRRKSALDGMSL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I Sbjct: 411 PGKLADCSDKNPEKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDRIYG 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ Sbjct: 471 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKE 530 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++L PPL+++ + K YA+ +E IL+E + K I R+KGLGEM A QL Sbjct: 531 GYVYLAQPPLYKLERNKKVWYAYSDEELDSILQEVGRDNNNK--IQRYKGLGEMDAEQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD R LLRV ++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 589 DTTMDPEHRVLLRVTMDD--ETASELDLTFTTLMGDKVEPRREFIEENAQYVQNLD 642 >gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar shandongiensis] Length = 632 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 380/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S + ++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A KI +N ++ + Sbjct: 410 SSKDPAISGIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus cereus] Length = 632 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGTQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +K+ +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273] gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272] gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272] gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273] Length = 640 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGTTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E + K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++++ ++IL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNDKELERILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|328543970|ref|YP_004304079.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Polymorphum gilvum SL003B-26A1] gi|326413714|gb|ADZ70777.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Polymorphum gilvum SL003B-26A1] Length = 703 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 406/691 (58%), Positives = 509/691 (73%), Gaps = 11/691 (1%) Query: 1 MTDDSIDLFSTLPP-----QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGL 55 M+ + DLF+ + + + + P P ++Y A+ I +LEGL Sbjct: 17 MS-GNKDLFARAEDVAPAPKPVAAPASAEPARPRPARPVAVASPGGEDYTAADIEVLEGL 75 Query: 56 EPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115 EPVR RPGMYIGGTDEKALHHLF+EV+DN+MDE +AG+A I+V+LD +G+LTV DNGRG Sbjct: 76 EPVRRRPGMYIGGTDEKALHHLFAEVVDNSMDEAVAGHATWIDVALDADGYLTVTDNGRG 135 Query: 116 IPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVAR 175 IPV+ HPKF +KS LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALS+EL V VAR Sbjct: 136 IPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEELVVEVAR 195 Query: 176 QNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKA 235 ++ Q F RG P+ PLE +N+RGT + FRPDP+IFG A F +RLLKM +SKA Sbjct: 196 ARKLYRQTFRRGHPVGPLELIGDTQNRRGTMVRFRPDPQIFGPGARFTPSRLLKMARSKA 255 Query: 236 YLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 YL G V+ W CD IAE+ P + F+FPGGL+ +L +L + ++F G+T+K Sbjct: 256 YLFGGVEIRWHCDPALIAEQDQTPAEAVFHFPGGLRDFLTERLAGERRVVEDLFAGRTDK 315 Query: 295 KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 G+H G+VEWA+ W + + SYCNT+ T EGGTHE+GLR AL RG+K YA+L NK+ Sbjct: 316 AGSH-GSVEWAVTWFAGDGFLNSYCNTVPTPEGGTHEAGLRYALLRGLKAYADLVGNKKG 374 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I DD+M SA G+LSVFIREPEF GQTK KL + +A R ENA+RD FDH+L +P + Sbjct: 375 GLITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRITENAIRDAFDHWLTASPNQ 434 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 A +LLEWVI+R+EERLRRR++++V RKTA+RKLRLPGKLADCS N + GTELFIVEGDSA Sbjct: 435 ANRLLEWVIDRAEERLRRRQEKDVARKTAVRKLRLPGKLADCSANQSEGTELFIVEGDSA 494 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQARNRSNQAVLPLRGKILNVA+AG +K+ NQQI DLVQALGC TRSQYR+ DLR Sbjct: 495 GGSAKQARNRSNQAVLPLRGKILNVANAGRDKLAANQQIADLVQALGCGTRSQYRDTDLR 554 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 YEKVIIMTDADVDGAHIASLL+TFFY+EM +LI HLFL PPL+R++QG +VYA D+ Sbjct: 555 YEKVIIMTDADVDGAHIASLLITFFYREMPELIRNSHLFLAVPPLYRLSQGGTTVYARDD 614 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 HK ++L K G+ KIEI RFKGLGEM+ +QLKET M +KRTL+RV + + + Sbjct: 615 AHKDELLASVFK-GRSKIEIGRFKGLGEMMPAQLKETTMAPDKRTLMRVMVEE--EDEAE 671 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+ ++ +LMG K + RF FIQE A F D+ Sbjct: 672 TRSAVERLMGNKPEARFSFIQEHAEFAHDLD 702 >gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24] gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24] Length = 642 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 384/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 5 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 65 EINVSIEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+I Sbjct: 124 GVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 183 FQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I + + K G VE ++ + E S+ N I T EGGTHE G Sbjct: 237 LNRSKQPIHEDPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGF 293 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 294 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K++E + ++ + RK+A+ LPG Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 474 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET Sbjct: 534 IYIAQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641 >gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551] gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551] Length = 638 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 382/648 (58%), Gaps = 21/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I V + Sbjct: 7 QAYEADQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCDEINVII 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV K + +E+ILT LHAGGKF Y++SGGLHGVG SV Sbjct: 67 EKDNSITVKDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V R + QK+ RG+P + L+ + +K GT I FRPD +IF + Sbjct: 126 VNALSTSLEVHVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFRPDGEIFTETLE 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ +K +E ++ E+++ GG+K+Y++ ++ Sbjct: 185 YDFDTLANRLRELAFLNRGIKITIEDKRE------EDKRREYHYEGGIKSYVEHLNRSKE 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340 +I E + + +VE AI + + + N I T EGGTHE+G + ALTR Sbjct: 239 VIHEEPIYIEGNRDNI---SVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTR 295 Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA ++ +D+ I+S+ +P+F GQTKTKL + +A+ ++ Sbjct: 296 VINDYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDS 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457 + + YL++NPI A K++E + + R+ +K RK+A+ LPGKLADCS Sbjct: 356 VFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N +I ++ Sbjct: 416 SKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTII 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY K++IMTDADVDGAHI +LLLTFFY+ M +IE ++++ P Sbjct: 476 TALGTGIGDDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++QG K YA+++ +++L F + K + R+KGLGEM QL ET MD Sbjct: 536 PLYKVSQGKKVEYAYNDRQLEEVLASFPE--GAKPNLQRYKGLGEMNPEQLWETTMDPEF 593 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + ++ LMG K + R FI+E A ++ ++ Sbjct: 594 RTLLQVNLQDAI----EADETFEILMGDKVEPRRNFIEENAQYVKNLD 637 >gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar entomocidus] Length = 632 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E +RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKVRYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQGAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|254430578|ref|ZP_05044281.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001] gi|197625031|gb|EDY37590.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001] Length = 652 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 258/658 (39%), Positives = 375/658 (56%), Gaps = 15/658 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ Sbjct: 2 SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L+ +G V DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++SGGL Sbjct: 62 DQILVVLNEDGSCAVSDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ + VTV R + + +Q+F RG + L + + GT + F+PD + Sbjct: 121 HGVGVSVVNALSEWVQVTVYRHDQVHTQRFERGAAIGSLASAPGEKGRTGTTVCFKPDSE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYL 273 IF FD A L + AYL+G V+ + +++ A G P ++ +++ GG+K Y+ Sbjct: 181 IFTGGISFDYATLSSRLRELAYLNGGVRIVFRDERQSARNAAGEPHEDIYFYEGGIKEYV 240 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 + + +I EK+G + + I + N I T +GGTH G Sbjct: 241 AYMNAEKDPLHPDIIYVNAEKEGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 L+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + + Sbjct: 300 LKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTE 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + V+ + + +L NP +LE I+ R+ RE V RK+ + LP Sbjct: 360 VRGIVDTLVGEALGEFLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479 Query: 511 QQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +I L+ ALG + + +E LRY +++IMTDADVDGAHI +L+LTFF++ L+E Sbjct: 480 TEIQALITALGLGIKGEDFDEKNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEG 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ +G Y ++E +K +E F + K I RFKGLGEM+ QL Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEGDLKKTIESFGE--KANYTIQRFKGLGEMMPQQLW 597 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 ET MD R + RVEI L + LMG K R +FI+ ++ +D + Sbjct: 598 ETTMDPATRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELDLAQLD 651 >gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2] gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2] Length = 635 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 265/651 (40%), Positives = 384/651 (58%), Gaps = 22/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + YD S I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY I+ Sbjct: 2 SQQNTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEVVDNSIDEALAGYCTKIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV+DNGRGIPV + K KSTLE+++T LHAGGKF Y++SGGLHGVG Sbjct: 62 VRVHEDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGEGYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ + VTV ++ Q++ RG+P ++ + ++ GT + F+PDP+IF D Sbjct: 121 VSVVNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGE-SDETGTTVKFKPDPEIFTD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L + A+L+ ++ ++ F + GG+ +++ Sbjct: 180 TTVYEYETLQSRIRELAFLNKGLEIELIDER-------TGTSNSFKYDGGIIEFVKHLNR 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ ++ E + K VE ++ + + I S+ N I T EGGTHESG + A Sbjct: 233 NKEVMHEEPIYVEGSKDHIQ---VEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSA 289 Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA T + + DD+ I+SV I EP+F GQTKTKL + + + Sbjct: 290 LTRIINDYARKTGLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGI 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE+ + +L +NP + K++E ++ + R RK RE RK+A+ LPGKLA Sbjct: 350 VESFFAEKLQEFLDENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I N +I Sbjct: 410 DCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIR 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + RY KVIIMTDADVDGAHI +L+LTFF++ M +IE ++++ Sbjct: 470 AIITALGTGIGDDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLF+I + YA E+ +++I+ EF + K+ + R+KGLGEM A+QL ET MD Sbjct: 530 AQPPLFKIERNKVIRYAQSEKEREEIIAEFGE--GAKVNVQRYKGLGEMNATQLWETTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V I + + + LMG + R FIQ+ A + ++ Sbjct: 588 PESRTMLQVSIEDAI----EADVIFDTLMGDNVEPRRDFIQQFAKDVKNLD 634 >gi|126697571|ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630] gi|254977347|ref|ZP_05273819.1| DNA gyrase subunit B [Clostridium difficile QCD-66c26] gi|255094677|ref|ZP_05324155.1| DNA gyrase subunit B [Clostridium difficile CIP 107932] gi|255102904|ref|ZP_05331881.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42] gi|255308724|ref|ZP_05352895.1| DNA gyrase subunit B [Clostridium difficile ATCC 43255] gi|255316431|ref|ZP_05358014.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55] gi|255519091|ref|ZP_05386767.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34] gi|255652274|ref|ZP_05399176.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79] gi|260681774|ref|YP_003213059.1| DNA gyrase subunit B [Clostridium difficile CD196] gi|306521988|ref|ZP_07408335.1| DNA gyrase, B subunit [Clostridium difficile QCD-32g58] gi|115249008|emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile] gi|260207937|emb|CBA60049.1| DNA gyrase subunit B [Clostridium difficile CD196] Length = 633 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 386/648 (59%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y AS I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE + GY + I VS+ Sbjct: 3 QEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G + V DNGRGIPVE HPK KSTLE +LT LHAGGKF Y++SGGLHGVG+SV Sbjct: 63 NEDGSVLVKDNGRGIPVEIHPK-TGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS + V I+ Q + +G+P S LE + ++ +GT I F PD IF + Sbjct: 122 VNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESQD-KGTMIQFMPDETIFDEI-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + ++L+ +K + +E EK F++ GGL Y++ ++R+ Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKE-----FHYTGGLVEYIKYLNKSRT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I +I K VE A+ + + I S+ N I T EGG+H SG + ALT+ Sbjct: 235 GIHDDIVYI---DKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA+ + + ++++ +D+ ++SV + EP+F GQTKTKL + + V++ Sbjct: 292 TVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDS 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 D +L +NP A +++ + R +K RE RK+ + LPGKLADC+ Sbjct: 352 VTVDELGSFLEENPSTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCA 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+F+VEGDSAGGSAKQ R+R++QA+LPLRGKILNV + ++I ++ +I +++ Sbjct: 412 EKDPSKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + + RY K+IIMTDADVDGAHI +LLLTFF++ M LI++ +++ P Sbjct: 472 TAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++T+ K Y + ++ +L+E ++G +E+ R+KGLGEM A QL ET M+ Sbjct: 532 PLYKVTKQKKEHYVYSDKELNILLDEIGRNG---VELQRYKGLGEMNAEQLWETTMNPET 588 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + LMG K R +FI+E A F+ ++ Sbjct: 589 RTLLQVTVED----AAIADEVFSMLMGDKVAPRKEFIEENARFVRNLD 632 >gi|323141431|ref|ZP_08076321.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067] gi|322414087|gb|EFY04916.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067] Length = 646 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 372/662 (56%), Gaps = 23/662 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 D + NY+A I +LEGLE VR RP MYIG T + LHHL EV+DN++DE Sbjct: 2 TQDIDIEEATAVKGNYNAEQIHVLEGLEAVRKRPAMYIGSTSSRGLHHLVYEVVDNSIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AGY + I+V + + +TV+DNGRGIPV+ K K +E+I+T LHAGGKF + Y Sbjct: 62 ALAGYCSDIKVIIHKDNSITVIDNGRGIPVDMMKK-EQKPAVEVIMTVLHAGGKFGDGGY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG++ VNALS+ + V V R + +F++G L +K GT + Sbjct: 121 KVSGGLHGVGVTCVNALSEHMEVEVRRGGKCYGIEFAKGKTSKKLYEKGDC-ETTGTTVH 179 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+PD IF + + L + A+L+ + + ++ + E F+F GG Sbjct: 180 FKPDATIFTE-TEYSYDTLRLRIRELAFLNKGITISLTDER------AEDKSETFHFAGG 232 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + Y++ +++ I+ + + EK VE A+ +C+ I +Y N I T+EG Sbjct: 233 IIEYVEFMDKDKDKINPKPIYLEGEKNAVI---VEVAMQYCDTYSENIFTYVNNINTEEG 289 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH SG R ALTR I YA T + DD+ +LS+ ++ P+F QTK Sbjct: 290 GTHLSGFRKALTRTINAYARKTNMLKENEDALSGDDVREGLTAVLSLKVQNPQFESQTKI 349 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAI 444 KL + + V+N + D ++ +NP A KL+ + ++ R+ + RK A+ Sbjct: 350 KLGNSEVMPIVDNLVGDTLAEFMEENPQVAKKLVEKAIVAARARLAARKARELTRRKNAM 409 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC TE+++VEGDSAGGSAKQ RN QA+LPLRGKILNV A Sbjct: 410 DLGGLPGKLADCKSRNVEDTEIYLVEGDSAGGSAKQGRNSDFQAILPLRGKILNVEKARL 469 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +K+ ++++I +++ A GC + E RY K+IIMTDADVDGAHI +LLLTFFY+ M Sbjct: 470 DKVLSSEEIRNMITAFGCGIGDDFNLEKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMQ 529 Query: 565 DLIEQKHLFLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 LI++ H+F+ PPL+ I + + YA+ +E Q+IL+E + + R+KGLGEM Sbjct: 530 PLIKEGHVFIAQPPLYLIRKNQKQHYYAYSDEELQEILDEVGRDANPY--VQRYKGLGEM 587 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL ET MD RT+L+V + + + LMG K + R +FI++ A + + Sbjct: 588 NPGQLWETTMDPAARTILQVHLED----AAEADRIFSILMGDKVEPRRQFIEDNAKKVRN 643 Query: 684 VG 685 + Sbjct: 644 LD 645 >gi|163755890|ref|ZP_02163007.1| DNA gyrase, B subunit [Kordia algicida OT-1] gi|161324061|gb|EDP95393.1| DNA gyrase, B subunit [Kordia algicida OT-1] Length = 645 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 263/659 (39%), Positives = 386/659 (58%), Gaps = 24/659 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ + Y A+SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AG+ + Sbjct: 2 SEENKNQYSAASIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V ++ + +T DNGRGIPV H K S LE+++T + AGGKFD +Y++SGGLHG Sbjct: 62 ISVIINEDNSITTEDNGRGIPVGIHEK-KGVSALEVVMTEIGAGGKFDKDSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALSD L TV R I+ Q++ RG L P++ +KRGT +TF+PD IF Sbjct: 121 VGVSCVNALSDHLRATVYRDGKIWEQEYERGKALYPVKAIGD-SDKRGTVVTFKPDASIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L + +YL+ + + + EK E F+ GLK +++ Sbjct: 180 TQTLEYNYETLANRMRELSYLNKGITITLTDKRNKDEKG-EYIGEVFHSQEGLKEFIKYL 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 NR I +++ + EK G VE A+ + E Y N I T EGGTH SG R Sbjct: 239 DGNREQIIADVVAFEGEKNGIP---VEVAMTYNTSYSENLHSYVNNINTHEGGTHLSGFR 295 Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LT +KKYAE T K I DD I+SV + EP+F GQTKTKL + + Sbjct: 296 RGLTHTLKKYAEGTGMLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVS 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 +V A+ + YL ++P +A +++ V+ ++ R +K RE+ RKT + LPGK Sbjct: 356 ASVSQAVSEMLTDYLEEHPDDAKTIVQKVVLAAQARHAAQKAREMVQRKTVMSIGGLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N++ Sbjct: 416 LSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEE 475 Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I ++ ALG ++ + LRY K++IM DADVDG+HIA+L+LTFF++ M +LI Sbjct: 476 IKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 E H+++ +PPL+ + +G K YA ++E + I+EEF + I R+KGLGEM A Q Sbjct: 536 ENGHIYIAAPPLYLVKKGAKRRYAWNDEERDAIIEEFGQGA----NIQRYKGLGEMNAEQ 591 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L +T M+ + RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 592 LWDTTMNPDFRTLRQVMIDNGG----EADRVFSMLMGDEVPPRREFIEKNAVYA-NIDA 645 >gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319] gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319] Length = 638 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 257/648 (39%), Positives = 380/648 (58%), Gaps = 21/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I V + Sbjct: 7 QAYEADQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCDEINVII 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV K + +E+ILT LHAGGKF Y++SGGLHGVG SV Sbjct: 67 EKDNSITVKDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V R + QK+ RG+P + L+ + +K GT I F PD +IF + Sbjct: 126 VNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFHPDGEIFTETLE 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ +K +E ++ E+++ GG+K+Y++ + Sbjct: 185 YDFDTLANRLRELAFLNRGIKITIEDKRE------EDKRREYHYEGGIKSYVEHLNRAKE 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340 +I E + + +VE AI + + + N I T EGGTHE+G + ALTR Sbjct: 239 VIHEEPIYIEGNRDNI---SVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTR 295 Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA ++ +D+ I+S+ +P+F GQTKTKL + +A+ ++ Sbjct: 296 VINDYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDS 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCS 457 + + YL++NPI A K++E + + R+ +K RK+A+ LPGKLADCS Sbjct: 356 VFAEHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCS 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI +N +I ++ Sbjct: 416 SKDPSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTII 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + RY K++IMTDADVDGAHI +LLLTFFY+ M +IE ++++ P Sbjct: 476 TALGTGIGDDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++QG K YA+++ +++L F + K + R+KGLGEM QL ET MD Sbjct: 536 PLYKVSQGKKVEYAYNDRQLEEVLASFPE--GAKPNLQRYKGLGEMNPEQLWETTMDPEF 593 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + ++ LMG K + R FI+E A ++ ++ Sbjct: 594 RTLLQVNLQDAI----EADETFEILMGDKVEPRRNFIEENAQYVKNLD 637 >gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603] gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603] Length = 640 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FTETTEYEFDTLATRMRELAFLNRNIKLIIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar vazensis] gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 260/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|150396283|ref|YP_001326750.1| DNA topoisomerase IV subunit B [Sinorhizobium medicae WSM419] gi|150027798|gb|ABR59915.1| DNA topoisomerase IV, B subunit [Sinorhizobium medicae WSM419] Length = 686 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 436/688 (63%), Positives = 538/688 (78%), Gaps = 9/688 (1%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEI----PDSPAFANQSASDNYDASSIRILEGLEPV 58 DDS DLFS +P Q + + +K S +YDAS+I +LEGLEPV Sbjct: 2 DDSSDLFSAMPQQPKPADAAPRKPAAAAAGNEAPRPAPRTSDGSDYDASAIEVLEGLEPV 61 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V+LD +GFLTV DNGRGIPV Sbjct: 62 RRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVNLDADGFLTVTDNGRGIPV 121 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 ENHPKFP KSTLE+++T LHAGGKFD YE SGGLHGVG+SVVNALSD+L V VAR Sbjct: 122 ENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGVGVSVVNALSDDLEVEVARNRR 181 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 ++ Q+FSRG+ LE V N+RGTR+ F PDP+IFG A F+ ARL +M +SKAYL Sbjct: 182 LYRQRFSRGVAQGGLEDLGDVHNRRGTRVRFHPDPQIFGPHARFEPARLFRMARSKAYLF 241 Query: 239 GRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 G V+ WSCD + E IP++ F+FPGGLK YL L ++ EIF GK+EK Sbjct: 242 GGVEIRWSCDPSLLPEGSEIPDRAVFHFPGGLKDYLAATLGKEFTVTREIFAGKSEKSNG 301 Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 H G++EWA+ W + +I SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQNKRA + Sbjct: 302 H-GSLEWAVTWYGGDQQIHSYCNTIPTPEGGTHEAGLRIALTKGLKNYAELTQNKRAAIV 360 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+MISA G+LSVFIREPEF GQTK +L +++AQR VENALRDPFDHYL NP EA K Sbjct: 361 TTDDVMISAAGMLSVFIREPEFVGQTKDRLATVEAQRIVENALRDPFDHYLADNPAEAAK 420 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WV+ER+EER+RRRK++EV+RKTA+RKLRLPGKLADC+QN A G ELFIVEGDSAGGS Sbjct: 421 LLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKLADCAQNTAEGAELFIVEGDSAGGS 480 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQARNR+NQA+LPLRGKILNVASAG EK+ NQQI DL+QALGC TRS+YREEDLRYE+ Sbjct: 481 AKQARNRANQAILPLRGKILNVASAGREKLGANQQIGDLIQALGCGTRSKYREEDLRYER 540 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 ++IMTDADVDGAHIASLL+TFFYQEM +LI HLFL PPL+R++QG+K++YA D+ H+ Sbjct: 541 IVIMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLAVPPLYRLSQGSKTLYARDDAHR 600 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++++ + G+GK+EI RFKGLGEML +QLKET MD KRTLL+VEI+ + T+D Sbjct: 601 EELMQT-EFSGRGKVEIGRFKGLGEMLPAQLKETTMDPAKRTLLKVEIDDV--DFEGTRD 657 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +++ LMGTKA+ RF+FIQERA F +++ Sbjct: 658 AVDSLMGTKAEARFRFIQERAVFAENLD 685 >gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16] gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16] Length = 641 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 375/649 (57%), Gaps = 21/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD S I++LEGLE VR RPGMYIG T ++ LHHL E++DN++DE +AG+ + I+V++ Sbjct: 8 QTYDESQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNSIDEAMAGFCDEIKVTI 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + LTV DNGRGIPV K + +E+I+TTLHAGGKF Y++SGGLHGVG SV Sbjct: 68 EEGNALTVEDNGRGIPVGIQEKM-GRPAVEVIMTTLHAGGKFGGGGYKVSGGLHGVGASV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V I SQ +SRG+P + L + +K GT ITF+PDP+IF + Sbjct: 127 VNALSTHLTVNVHLDGKIHSQSYSRGVPDADLTVIGET-DKTGTTITFQPDPEIFRETVE 185 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L+ + + K +++ GG+ ++++ ++ Sbjct: 186 FDYETLAARIRELAFLNKGLTIKIEDKRTEDGKKAT-----YHYEGGISSFVKHLNRSKE 240 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E ++EK G +VE A+ + + I S+ N I T EGGTHESG + LTR Sbjct: 241 TLHEEPIYVESEKDGI---SVEVAVQYNDGFTSSIYSFANNINTHEGGTHESGFKTGLTR 297 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+SV I EP+F GQTKTKL + +A+ ++ Sbjct: 298 VINDYARKNGLFKENDPNLSGEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARTITDS 357 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + F +L +NP A K+++ + S R +K RE RK+A+ LPGKL DC+ Sbjct: 358 LFSESFARFLSENPGVARKIVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLTDCT 417 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +ELFIVEGDSAGGSAK R+ QA+LPLRGKILNV A +KI N +I ++ Sbjct: 418 SKDASISELFIVEGDSAGGSAKGGRDPHFQAILPLRGKILNVEKARLDKILANNEIRMII 477 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G ++ RY K++IMTDADVDGAHI +L+LTFFY+ M +L+E ++++ P Sbjct: 478 TAIGTGIGDEFDISKARYHKIVIMTDADVDGAHIRTLILTFFYRYMRELLENGYVYIAQP 537 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL++I QG Y + + L + K+ + R+KGLGEM A QL ET MD Sbjct: 538 PLYKIEQGKNNVTYVYSDRELDAHLATVA--DRSKVSVQRYKGLGEMNAGQLWETTMDPQ 595 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R +L+V + + + LMG + + R FIQE A ++ ++ Sbjct: 596 VRNMLQVTLADAIK----ADEIFEILMGDRVEPRRDFIQENAHYVKNLD 640 >gi|154483927|ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC 27560] gi|149735418|gb|EDM51304.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC 27560] Length = 643 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 261/655 (39%), Positives = 375/655 (57%), Gaps = 18/655 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N + + Y A I++LEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY Sbjct: 2 GNNTNVENEYGADQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V ++ + +TV D+GRGIP + + K K +E++ T LHAGGKF Y++SGGL Sbjct: 62 DTIDVQINEDNSITVRDDGRGIPTDINTK-TGKPAVEVVFTVLHAGGKFGGGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG SVVNALS L V V R + QK+ G + PL + GT + F PD Sbjct: 121 HGVGASVVNALSKWLEVKVCRGGKVHYQKYEYGKVVEPLTVIGDCNPDFTGTEVKFLPDD 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF D +D L + A+L+ +K +E P ++ F++ GG+K ++ Sbjct: 181 TIFEDTV-YDYKTLEIRLRETAFLTKNLKIVLRDVREEK-----PIEKTFHYEGGIKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + + ++ + + VE A+ + S+ N I T EGGT Sbjct: 235 NYLNKGKQELYDDVIYCEGTVNNVY---VEVAMQHNDAYTENTLSFVNNINTPEGGTQVE 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + A+T+ YA+ + + ++ DD I+SV I +P+F GQTK KL + Sbjct: 292 GFKRAITKTFNNYAKQNKILKENEENLSGDDFREGLTAIISVKIEDPQFEGQTKQKLGNS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A+ VE + + +YL QNP A + E + R RK RE RKTA+ LP Sbjct: 352 EARAAVEGVMSEQLTYYLEQNPAIAKIICEKAVLAKRARDAARKAREATRKTALSVAALP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+FIVEGDSAGGSAK+AR R+ QA+LPLRGKILNV A +KI +N Sbjct: 412 GKLADCSDKNPENCEIFIVEGDSAGGSAKKARTRATQAILPLRGKILNVEKARIDKIMDN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G + + LRY K+IIMTDADVDGAHI +L+LTFFY+ M +LI+ Sbjct: 472 AEIRTMITAFGTGIQEDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFFYRFMPELIKDG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H++L PPL+++T+ K+ YA+ ++ +IL E + + K I R+KGLGEM ASQL E Sbjct: 532 HVYLAMPPLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNK--IQRYKGLGEMDASQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD N R L +V+I++D L + + LMG + R +FI+ A F+ ++ Sbjct: 590 TTMDPNTRILKQVKIDEDK--LSEMDQTFTILMGDDVEPRREFIEANAKFVKNLD 642 >gi|154503045|ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149] gi|153796286|gb|EDN78706.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149] Length = 645 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 262/648 (40%), Positives = 379/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I VS++ Sbjct: 11 EYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGYCDTINVSIN 70 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 71 PDNSVTVVDNGRGIPVGLNHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L V + + I+ Q++ RG + L+ + +K GT++TF PD +IF + Sbjct: 130 NALSVWLEVEIYNEGKIYKQRYERGKTMYSLKVVGECDPDKTGTKVTFLPDGEIFEETV- 188 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + + A+L+ +K +E + F++ GG+K ++ ++++ Sbjct: 189 FEYDVLKQRLREMAFLTKGLKIILQDLREEEIREHT-----FHYEGGIKEFVTYLNKSKT 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340 + +I + EK G VE A+ + + T + N I T EGGTH G R ALT+ Sbjct: 244 PLYDQIIYCEGEKDGV---VVEMAMQHNDSYSDNTYGFVNNITTPEGGTHIEGFRKALTK 300 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +YA + + ++ DD+ I+SV I EP+F GQTK KL + +A+ V+N Sbjct: 301 TFNEYARKNKLLKDNEPNLSGDDIREGLTAIVSVKIGEPQFEGQTKQKLGNSEARGAVDN 360 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A + +E ++ + R+ + RK+A+ + LPGKLADCS Sbjct: 361 IVSTQLEIFLEQNPSVAKQTVEKSLMAQRAREAARKARDLTRRKSALEGMSLPGKLADCS 420 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK AR R+ QA+LPLRGKILNV A +KI N +I ++ Sbjct: 421 DKNPENCEIYIVEGDSAGGSAKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMI 480 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI + +++L P Sbjct: 481 TAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQP 540 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+ +E +IL E + K I R+KGLGEM A QL ET MD Sbjct: 541 PLYKLEKNKKVWYAYSDEELNEILTEVGRDSNNK--IQRYKGLGEMDADQLWETTMDPEH 598 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV ++ + + + LMG K + R +FI+E A F+ ++ Sbjct: 599 RVLLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENARFVKNLD 644 >gi|225570329|ref|ZP_03779354.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM 15053] gi|225160861|gb|EEG73480.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM 15053] Length = 644 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 256/656 (39%), Positives = 378/656 (57%), Gaps = 18/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ Sbjct: 1 MSTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGL Sbjct: 61 DTIYVTINQDNSVTVVDNGRGIPVGINSKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG SVVNALS+ L V + + ++ Q++ RG L + +K GT++TF PD Sbjct: 120 HGVGASVVNALSNWLEVEIYSEGKVYMQRYERGKVAKKLAVIGECGSDKTGTKVTFLPDD 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + F+ L + + A+L+ +K D+ E P ++ F++ GG+K ++ Sbjct: 180 TIFEETV-FEYDVLKQRFREMAFLTKGLKIVLRDDRPEDE----PVEKTFHYEGGIKQFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332 + +++ + I + + VE A+ + + T + N I T EGGTH Sbjct: 235 EYLNRSKTPLYESIIYCEG---LVNNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIV 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALT+ YA + + ++ +D+ I+SV I +P+F GQTK KL + Sbjct: 292 GFRNALTKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 +A+ V++ + + +L QNP A +E V+ + R+ + RK+A+ + L Sbjct: 352 EARGAVDSVVSSQLEIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALDSMSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R QA+LPLRGKILNV A +KI Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARDRGTQAILPLRGKILNVEKARLDKIYA 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ Sbjct: 472 NAEIKAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKE 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++L PPL+++ + K YA+ +E IL E + G K I R+KGLGEM A QL Sbjct: 532 GYVYLAQPPLYKLEKNKKVWYAYSDEELDTILREVGRDGSNK--IQRYKGLGEMDAGQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R LLRV ++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 590 ETTMDPEHRILLRVTMDD--ETTSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643 >gi|160946608|ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270] gi|158446992|gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270] Length = 638 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 255/655 (38%), Positives = 383/655 (58%), Gaps = 23/655 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ NY A IR+L GLEPVR+RPGMYIG T K LHHL EV+DN++DE +AG + Sbjct: 2 SKEKIRNYGAKDIRVLTGLEPVRLRPGMYIGSTGVKGLHHLVYEVVDNSIDEALAGVCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V DNG GIPVE HP+ KSTLE +LT LHAGGKF+N+ Y++SGGLHG Sbjct: 62 ITVTIFEDNSVRVEDNGSGIPVEVHPQ-TGKSTLETVLTILHAGGKFNNNAYQVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+ L V R ++ Q+FSRG S LE + GT ITF+PD +IF Sbjct: 121 VGVSVVNALSEWLIANVKRDGKLYEQQFSRGNTTSKLEVVG-TSKETGTIITFKPDSEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L + A+L+ VK ++ ++E E F++ GG+K++++ Sbjct: 180 DTTI-YEKEILRNRFREMAFLNKGVKIIFTDERE-------DFTETFHYEGGIKSFVEYM 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 N++ + +E+ + ++ + VE ++ + + E ++ N I T EGG+H G R Sbjct: 232 NRNKNNLHNEVIYFQGQRGDSQ---VEISMQYTDGYSENVLTFANNIHTPEGGSHLVGFR 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y + ++ DD GI+S+ + P+F GQTK KL + +++ Sbjct: 289 TALTRTLNDYGRKYNLIKDKDANLQGDDTREGLTGIVSIKLPNPQFEGQTKAKLGNSESR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE L D +L +NP ++E + R RK R+ +K+ + LPGK Sbjct: 349 GIVETFLYDNLMTFLEENPKVGKIIIEKAQSSARAREAARKARDLTRKKSILDNTTLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DC ++ E+++VEGDSAGGSAKQ R+ QAVLPL+GKI+NV A +KI ++ Sbjct: 409 LSDCQESDISVNEIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G + ++LRY K++IMTDADVDGAHI +L+LTFFY+ M +LIEQ H+ Sbjct: 469 IKSMITAFGTGIGKDFNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHV 528 Query: 573 FLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+ I +G Y +E Q L+E + I R+KGLGEM +QL ET Sbjct: 529 YIAQPPLYGIIKGVKVVKYCWTDEELQASLDELGRDSHR---IQRYKGLGEMNPAQLWET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L+V I+ L ++ + LMG K + R +FI++ A +++++ Sbjct: 586 TMNPENRLFLQVNIDD--EELVSIDETFSTLMGDKVEPRREFIEQNAKYVENIDA 638 >gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4] gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196] gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4] gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196] Length = 640 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 3 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 63 EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +I Sbjct: 122 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 181 FTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E K G VE A+ + E S+ N I T EGGTHE G Sbjct: 235 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 292 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 352 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 412 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 472 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET Sbjct: 532 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 590 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 639 >gi|257452986|ref|ZP_05618285.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|257466634|ref|ZP_05630945.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|315917788|ref|ZP_07914028.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|317059526|ref|ZP_07924011.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|313685202|gb|EFS22037.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|313691663|gb|EFS28498.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] Length = 638 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 257/651 (39%), Positives = 379/651 (58%), Gaps = 22/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY A +I +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY N I VS+ Sbjct: 2 NNYGAQNITVLEGLEAVRKRPGMYIGTTSARGLHHLVWEVVDNSVDEALAGYCNTITVSI 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV+ HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVGISV Sbjct: 62 LPDNIIQVEDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219 VNALS+ + V R ++ QK+ RG P+ ++ + + GT +TF+PD +IF Sbjct: 121 VNALSEWTEIKVKRDGNVYYQKYLRGKPIEDVKIISSLEAGDTTGTTVTFKPDAEIFETV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L + AYL+ ++ + I +KE+F F GG+ +L+ Sbjct: 181 I-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKEKFQFEGGISDFLKEVTHE 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ S+ + + + + V+ A + ++ I S+ N I T EGGTH +G R L Sbjct: 235 NQVLLSKQIHVEGQAE---QVGVDIAFTYTTSQSETIYSFVNNINTTEGGTHVTGFRTCL 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ I + ++ + D+ V I+SV + +P+F GQTKTKL + + V Sbjct: 292 TKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455 + L +L NP + ++E ++ + R ++ RE + + + LPGKLAD Sbjct: 352 NSVLSVDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV AG K +++I Sbjct: 412 CSSKKSEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESEEIRA 471 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A G + + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ Sbjct: 472 MVTAFGTNIGEESFDLNKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I+ G YA+ + ++IL+ + K K + R+KGLGEM QL ET MD Sbjct: 532 AQPPLYKISFGKSIRYAYTDAQLKEILQSVEGENK-KYTLQRYKGLGEMNPEQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FIQE A + ++ Sbjct: 591 PEARLLLKVSID----NAREADMLFDKLMGDKVEPRREFIQEHAEYAKNID 637 >gi|158319065|ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs] gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs] Length = 636 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 396/653 (60%), Gaps = 23/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ + Y A I++LEGL+PVR RPGMYIG T + LHHL EV+DN++DE + GY + Sbjct: 2 DKIKTQEYSAEQIQVLEGLDPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALGGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V+DNGRGIPV+ HP+ KSTLE +LT LHAGGKF Y++SGGLHG Sbjct: 62 ILVTIKEDDSIEVIDNGRGIPVDVHPQ-TGKSTLETVLTVLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+ L T+ ++ Q+F RG P+ ++ + + +GT I F+PD +IF Sbjct: 121 VGVSVVNALSEYLEATIKLDGKVYWQRFERGNPVEDIKIIGETKE-KGTTILFKPDAEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F L + A+L+ +K +E E +++ FY+ GG+ Y++ Sbjct: 180 EETV-FQYETLEYRLRELAFLNKGIKIVLIDKREGKE-----QEKVFYYDGGIMEYVKYL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N+S++ +I + EK+ + VE A+ + + I SY N I T EGGTH SG R Sbjct: 234 NKNKSVLHEKIIHFEKEKETS---VVEVAMQYTDTYTENIFSYANNINTHEGGTHLSGFR 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +LTR + YA+ ++ + + +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 291 ASLTRIVNDYAKKAGFLKEKDANFLGEDIREGLTAVISVKLTEPQFEGQTKTKLGNSEMR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VEN++ + + +L +NP +A ++E + R +K RE RK A+ + LPGK Sbjct: 351 GIVENSVSEALEAFLEENPSDAKIIVEKSLRAQRAREAAKKARELTRRKGALESMALPGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS+ +E++IVEG+SAGGSAKQ R+RS QA+LPLRGKILNV A +K+ N+ + Sbjct: 411 LADCSEKDPALSEIYIVEGNSAGGSAKQGRDRSIQAILPLRGKILNVEKARLDKMLNSDE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +++ A G ++ E LRY K++IMTDADVDGAHI +LLLTF ++ M LIE+ ++ Sbjct: 471 IRNMITAFGTSIGEEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ +G YA+ EE Q L E G ++I R+KGLGEM QL ET Sbjct: 531 YIAQPPLYKLKKGKVEEYAYSEEEMQVKLSEMG----GNVDIQRYKGLGEMNPEQLWETT 586 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RT L+V I + LMG K + R +FI++ + ++ ++ Sbjct: 587 MNPETRTFLQVTIED----AAAADNIFTTLMGDKVEPRREFIEQNSKYVTNLD 635 >gi|302669379|ref|YP_003829339.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316] gi|302393852|gb|ADL32757.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316] Length = 650 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 261/647 (40%), Positives = 387/647 (59%), Gaps = 15/647 (2%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + IEV+++ Sbjct: 12 YGADQIQILEGLEAVRKRPGMYIGTTASRGLHHLVYEIVDNSVDEALAGFCDHIEVTINE 71 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + + V DNGRGIPV+ + K + +E++ T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 72 DNTIIVQDNGRGIPVDVNHK-SGLTGVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVVN 130 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS+ L V V R+ ++ Q++ RG PL++ N GTR+ F+PD +IF + F Sbjct: 131 ALSEWLEVQVTRRGKVYQQRYERGKVCYPLKEVGTAPENVTGTRVYFKPDAEIFRETTVF 190 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + L + + A+L+ +K + + E+ P ++ F++ GG+K ++Q +N++ Sbjct: 191 EYSVLKQRLREMAFLTKGLKITLTDKR--VEEGEDPIQQTFHYEGGIKEFVQYLNKNKTS 248 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + +I + + VE + + I ++ N I T EGGTH G + ALT+ Sbjct: 249 LYGDIMYFEGNRNNVQ---VEVSFQHNDSYNESIYTFVNNINTPEGGTHLEGFKAALTKT 305 Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ V Sbjct: 306 FNDYARANKMLKDSEENLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVAGV 365 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + +YL QNP A ++LE I R RK R+ RK+A+ + LPGKLADCS Sbjct: 366 VSEQLTYYLEQNPNVAKQILEKAILAQRARDAARKARDLTRRKSALDGMGLPGKLADCSD 425 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I N +I ++ Sbjct: 426 KDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARVDRIYGNAEIKAMIT 485 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY+K+IIMTDADVDGAHI++L+LTF Y+ M +LI+Q H++L PP Sbjct: 486 AFGTGIHDDFDISKLRYDKIIIMTDADVDGAHISTLMLTFLYRFMPELIKQGHVYLAQPP 545 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + K YA+ +E KIL + + K I R+KGLGEM QL ET MD +R Sbjct: 546 LYKLEKNKKVWYAYSDEELDKILTDVGRDQNNK--IQRYKGLGEMDPEQLWETTMDPERR 603 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV +++ S D + LMG K + R +FI++ A F+ ++ Sbjct: 604 VLLRVNMDE--ESSSDIDVTFTTLMGDKVEPRREFIEKNAKFVKNID 648 >gi|296452676|ref|ZP_06894367.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP08] gi|296880071|ref|ZP_06904040.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP07] gi|296258458|gb|EFH05362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP08] gi|296428938|gb|EFH14816.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP07] Length = 633 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 386/648 (59%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y AS I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE + GY + I VS+ Sbjct: 3 QEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVDNSIDEALQGYCSDIYVSI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G + V DNGRGIPVE HPK KSTLE +LT LHAGGKF Y++SGGLHGVG+SV Sbjct: 63 NEDGSVLVKDNGRGIPVEIHPK-TGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS + V I+ Q + +G+P S LE + + +GT I F PD IF + Sbjct: 122 VNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESHD-KGTMIQFMPDETIFDEI-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + ++L+ +K + +E EK F++ GGL Y++ ++R+ Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKE-----FHYTGGLVEYIKYLNKSRT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I +I K VE A+ + + I S+ N I T EGG+H SG + ALT+ Sbjct: 235 GIHDDIVYI---DKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA+ + + ++++ +D+ ++SV + EP+F GQTKTKL + + V++ Sbjct: 292 TVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDS 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 D +L +NP+ A +++ + R +K RE RK+ + LPGKLADC+ Sbjct: 352 VTVDELGSFLEENPVTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCA 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+F+VEGDSAGGSAKQ R+R++QA+LPLRGKILNV + ++I ++ +I +++ Sbjct: 412 EKDPAKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + + RY K+IIMTDADVDGAHI +LLLTFF++ M LI++ +++ P Sbjct: 472 TAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++T+ K Y + ++ +L+E ++G +E+ R+KGLGEM A QL ET M+ Sbjct: 532 PLYKVTKQKKEHYVYSDKELNILLDEIGRNG---VELQRYKGLGEMNAEQLWETTMNPET 588 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + LMG K R +FI+E A F+ ++ Sbjct: 589 RTLLQVTVED----AAIADEVFSMLMGDKVAPRKEFIEENARFVRNLD 632 >gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204] gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204] Length = 664 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 262/653 (40%), Positives = 375/653 (57%), Gaps = 21/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+ S I++L+GLE VR RPGMYI T K LHHL E++DN +DE +AGYA+ + Sbjct: 26 KVTHTYNDSDIQVLDGLEAVRKRPGMYIASTSSKGLHHLVWEIVDNGIDEAMAGYASTVT 85 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++D + +TV D+GRG+P H K KST+E I T LHAGGKF Y++SGGLHGVG Sbjct: 86 VTVDKDNIITVEDDGRGMPTGIHEK-TGKSTIETIFTVLHAGGKFGGGAYKVSGGLHGVG 144 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 SVVNALS L VTV + +F G P+ L +K +K G+ + F+ DP IF Sbjct: 145 ASVVNALSSWLEVTVFHDGKEYYIRFENGGHPVGTLIEKGTCPADKHGSTVRFKADPTIF 204 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ L + A+L+ + ++ +E E F F GGLK Y + Sbjct: 205 TETVAYEHDILRDRLRQLAFLNKSICLKFNDLREEDE---AKRHYVFKFDGGLKQYTEFL 261 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 NR +++ EI + + VE A + + P I ++CN I T EGGTHE G R Sbjct: 262 NRNRDVVNHEIIYSEGYESNIQ---VEVACQYNDGYNPNIYTFCNNINTAEGGTHEEGFR 318 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +AL R I KYA T ++ ++ +DD ++SV +P++ GQTKTKL + + + Sbjct: 319 LALNRVINKYARDTGFLKEKDDNLTTDDCREGLTAVISVKHPDPQYEGQTKTKLGNSEVR 378 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 + V + + YL++NP EA +LE V S+ R+ +K RE RK+A+ LPGK Sbjct: 379 KIVSDIFGTQLERYLMENPDEAKVILEKVALASQARMAAKKARELTRRKSALEVSPLPGK 438 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A E++IVEG SAGGSAKQ R+ QA+LPLRGKILNV A +I N + Sbjct: 439 LADCSSKDASICEIYIVEGQSAGGSAKQGRDSHFQAILPLRGKILNVEKARQSRIYENAE 498 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A GC + E LRY K++IMTDADVDGAHI +LLLTFFY+ + L+EQ ++ Sbjct: 499 IRSMITAFGCGVSDEIDLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLRPLLEQGYI 558 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ +G YA+ + +++ E ++ I R+KGLGEM QL ET Sbjct: 559 YIAQPPLYKVQKGQTVRYAYTDNQLEEVKRELGD----RLSIQRYKGLGEMNPEQLWETT 614 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTL+RV + + + LMG + + R FI E A F +++ Sbjct: 615 MDPKNRTLIRV----AVGDAEAADYNFTMLMGEEVEPRKNFIVENAHFAENLD 663 >gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar wratislaviensis] Length = 632 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 265/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEAIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ETAMD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETAMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03] gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99] Length = 640 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 382/655 (58%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A+ + S+NY AS I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DNIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V V R I Q + +G+P L++ ++ GT I F+ D Sbjct: 120 HGVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L K + A+L+ ++ + +++ ++ +++ GG+K+Y++ Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEE----NVREDSYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ + E + VE A+ + + +Y N I T EGGTHE G Sbjct: 235 LINENKEPLHDEPVYVHQTRDDI---EVEIALQYNSGFATNLLTYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + F+ +L ++P A ++E I S R+ +K RE RK+A+ LP Sbjct: 352 VRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A +KI NN Sbjct: 412 GKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +V A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y ++ K+ E+ + K I+R+KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKL--NPTPKWSIARYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +L+V ++ + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPENRAMLQVTLDDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048] gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621] gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621] gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048] Length = 642 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 261/654 (39%), Positives = 380/654 (58%), Gaps = 21/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + Sbjct: 5 QKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLH Sbjct: 65 EINVSIEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +I Sbjct: 124 GVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ Sbjct: 183 FTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ I E K G VE A+ + E S+ N I T EGGTHE G Sbjct: 237 LNRSKQPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGF 293 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + ++ +D+ I+S+ P+F GQTKTKL + +A Sbjct: 294 KTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + E+ + F+ +L++NP A K+++ + ++ + RK+A+ LPG Sbjct: 354 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N Sbjct: 414 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE + Sbjct: 474 EVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET Sbjct: 534 IYIAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 592 TMDPEVRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 641 >gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 261/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDAEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|159904302|ref|YP_001551646.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9211] gi|159889478|gb|ABX09692.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9211] Length = 658 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 260/652 (39%), Positives = 377/652 (57%), Gaps = 16/652 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ + I Sbjct: 9 KVQADYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDEIV 68 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G ++ DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++SGGLHGVG Sbjct: 69 VVLCNDGSASITDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGLHGVG 127 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPL---SPLEKKEKVRNKRGTRITFRPDPKI 215 +SVVNALS+ + VTV RQN Q+F RG+P+ + ++ + GT + F+PD +I Sbjct: 128 VSVVNALSEWVEVTVRRQNQTHVQRFERGVPVGGLTSKDQPSSQKGVTGTTVCFKPDNQI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTYLQ 274 F F+ A L + AYL+G V+ + +++ + G P +E +++ GG+K Y+ Sbjct: 188 FTSGIEFEYATLSSRLRELAYLNGGVRIVFRDERKTSLTTEGDPYEEIYFYQGGIKEYVS 247 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 + + EI +EK G + + I + N I T +GGTH GL Sbjct: 248 YINSEKDALHPEIIYVNSEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGL 306 Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + LTR + +A ++ ++ +++ +LSV + EPEF GQTKTKL + + Sbjct: 307 KTVLTRTLNSFARKRGKRKDGDNNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEV 366 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V++ + + YL NP +LE I+ R+ RE V RK+ + LPG Sbjct: 367 RGIVDSLVGESLSQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPG 426 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N Sbjct: 427 KLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDSKIYKNT 486 Query: 512 QIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L+ ALG + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L+E Sbjct: 487 EIQSLITALGLGIKGEEFSSKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGG 546 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++ +G K Y ++E +K ++ F + K I RFKGLGEM+ QL E Sbjct: 547 YIYIACPPLYKVERGKKHKYCYNESDLKKTIDGFGE--KANYTIQRFKGLGEMMPKQLWE 604 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 T MD + R + +VEI L + LMG K R +FI+ + +D Sbjct: 605 TTMDPSTRMMKKVEIEDAL----EADRIFTILMGDKVAPRRQFIETHSVELD 652 >gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius] Length = 640 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 382/655 (58%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A+ + S+NY AS I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DNIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALSD L V V R I Q + +G+P L++ ++ GT I F+ D Sbjct: 120 HGVGSSVVNALSDTLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L K + A+L+ ++ + +++ ++ +++ GG+K+Y++ Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEE----NVREDSYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ + E + VE A+ + + +Y N I T EGGTHE G Sbjct: 235 LINENKEPLHEEPIYVHQTRDDI---EVEIALQYNSGFATNLLTYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNNYGAQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + F+ +L ++P A ++E I S R+ +K RE RK+A+ LP Sbjct: 352 VRQIVDRVFSELFERFLFEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A +KI +N Sbjct: 412 GKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILSN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +V A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y ++ K+ E+ + K I+R+KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKL--NPTPKWSIARYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +L+V ++ + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPENRAMLQVTLDDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|146300010|ref|YP_001194601.1| DNA gyrase, B subunit [Flavobacterium johnsoniae UW101] gi|146154428|gb|ABQ05282.1| DNA gyrase subunit B [Flavobacterium johnsoniae UW101] Length = 646 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 269/661 (40%), Positives = 391/661 (59%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSEEIKKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ +G +TV DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTIGVTINEDGSVTVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS + TV R+ I+ Q++ RG L P+++ + +KRGTR TF PD Sbjct: 120 HGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKRGTRQTFFPDDT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + ++L+ + ++ +E+ +K + E F+ GLK Y++ Sbjct: 179 IFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKG-EFKSEVFHSDEGLKEYIR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR I S + + EK VE A+ + I SY N I T EGGTH G Sbjct: 238 YLDGNREPIISHVISMDHEK---GEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRSGLTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + ++YL +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VVSPVSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG + E LRY KVIIM DADVDG+HI++L+LTFF++ M + Sbjct: 475 EEIRNIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTLILTFFFRFMKE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE+ H+++ +PPL+ + +G K YA ++ + + E G I R+KGLGEM A Sbjct: 535 LIEEGHVYIAAPPLYLVKKGNKKEYAWNDVQRDQANERMG----GSANIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD RTL +V I+ SL + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWETTMDPQFRTLRQVTID----SLAEADRVFSMLMGDEVPPRREFIEKNAVYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|312130783|ref|YP_003998123.1| DNA gyrase subunit b [Leadbetterella byssophila DSM 17132] gi|311907329|gb|ADQ17770.1| DNA gyrase subunit B [Leadbetterella byssophila DSM 17132] Length = 649 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 263/660 (39%), Positives = 384/660 (58%), Gaps = 22/660 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +++ +Y AS+I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY N Sbjct: 2 SENNKQDYSASNIQVLEGLEAVRKRPAMYIGDIGIKGLHHLIWEVVDNSIDEAMAGYCNR 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IE +++ + +TV DNGRGIP H K KS LE++LT LHAGGKFD TY++SGGLHG Sbjct: 62 IETTINTDNSITVKDNGRGIPTGWHEK-EQKSALEVVLTVLHAGGKFDKDTYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS L V R I Q+FS G PL P + + RGT I F+PD IF Sbjct: 121 VGVSCVNALSTHLRAEVHRDGKITEQEFSIGKPLYPAREIG-TTDYRGTIIHFKPDDSIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + ++L+ + + +E+ E+ P+ EEF+ GGL +++ Sbjct: 180 QV-TEYKYETVANRLRELSFLNKGITLTLTDLRELDEEG-KPKYEEFHSEGGLIEFVEYL 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 ++R + + + ++ G VE ++ + E +S+ N I T EGGTH SG R Sbjct: 238 DKSRERLITTPMYMEGQRDGVP---VEVSMTYNTSYSENVSSFVNNINTPEGGTHVSGFR 294 Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALTR +K YAE + K I I DD ++SV + EP+F GQTK+KL + + Sbjct: 295 MALTRTLKSYAEKSGLLAKEKIEISGDDFREGLTAVISVKVAEPQFEGQTKSKLGNSEVT 354 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V +++ ++YL +NP +A +++ VI ++ + V RK + LPGK Sbjct: 355 AAVSGCVQEMLENYLEENPKDAKIIVDKVILAARARIAAKKAREMVQRKNVLVGSGLPGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS++ E+++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A KI N++ Sbjct: 415 LADCSEHDPALCEVYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAQEYKIYENEE 474 Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I ++ ALG + + E LRY K+IIMTDAD+DG+HI +L+LTFFY+ M ++I Sbjct: 475 IKNIFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSHIRTLILTFFYRFMREII 534 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLAS 626 E +L++ PPL+ + +G +YA EE + +++ GK + + R+KGLGEM Sbjct: 535 ENGYLYIAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGKEENVGVQRYKGLGEMNPE 594 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET M+ RTL +V I S + + LMG R FI++ A + +V Sbjct: 595 QLWETTMNPQHRTLKQVTIE----SAAEADMLFSMLMGDDVPPRRDFIEKNARYA-NVDA 649 >gi|319405640|emb|CBI79263.1| topoisomerase protein [Bartonella sp. AR 15-3] Length = 692 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 429/695 (61%), Positives = 532/695 (76%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFSTLPP---------QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRI 51 M++++ DLFS L Q++ S +K A N + + Y+A SIR+ Sbjct: 1 MSENNKDLFSILNNAQSRIEMKEQNKPVSVNRQKVSRAISVSASHNDTEKNEYNALSIRV 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD G++TV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDSQGYITVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIP+ENHP+ P+KSTLE+I+T LH+G KFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPIENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 V R+ ++ Q+FS GIP S LE V N+RGTR+ F PD KIFG+KA F+A ++ K+ Sbjct: 181 EVVRERKLYRQRFSCGIPQSDLENLGDVYNRRGTRVRFHPDSKIFGEKAAFEAEKIYKIA 240 Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G VK W+CD I E +PEK F+FP GLK YL + L+N ++SE+F+G Sbjct: 241 RSKAYLFGGVKIRWNCDPIILEGIKNVPEKAIFHFPNGLKDYLLSLLKNEYCVTSEVFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 +T K+ + G+VEWAIAW N + SYCNTI T EGGTHE+GLR AL RG+K YAEL Sbjct: 301 RT-KQHSGHGSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKR+ I SDD+MISAV ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L Sbjct: 360 NKRSAIITSDDVMISAVAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL+WVIER+EERL+RR+ RE+NRKTA+RKLRLPGKLADC QN A G ELFIVE Sbjct: 420 SPQEATKLLDWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCRQNSAAGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR NQA+LPLRGKILNVASA EK+ +Q I DL+ ALGC+TRS+YRE Sbjct: 480 GDSAGGSAKQARNRINQAILPLRGKILNVASAAREKMSTSQTINDLILALGCQTRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K Y Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L+ + GK KIEI RFKGLGEM A QLKET M KRTLLRV I+ Sbjct: 600 ARDDIHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIDSV-- 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++++T++ + LMGTK + RF+FIQE ++F D++ Sbjct: 657 NIQETKNIVENLMGTKPEARFRFIQENSTFADNLD 691 >gi|148238483|ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp. WH 7803] gi|147847022|emb|CAK22573.1| DNA gyrase subunit B [Synechococcus sp. WH 7803] Length = 655 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 272/658 (41%), Positives = 382/658 (58%), Gaps = 20/658 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 SEIQVVLGEDGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG P+ L + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASEPQPAEEDGRTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + ++E A + G P +E +++ GG+K Sbjct: 181 DIEIFSVGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDAEGNPHEETYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328 Y+ + + EI EK G +VE A+ WC + I + N I T +GG Sbjct: 241 EYVAYMNAEKDALHPEIIYVNAEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297 Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH GL+ LTR + +A ++ ++ +++ +LSV + EPEF GQTKTK Sbjct: 298 THIEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 358 LGNTEVRGIVDSLVGEALGQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 KI N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ Sbjct: 478 KIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQK 537 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L++ ++++ PPL+++ +G Y ++E QK LE F + K I RFKGLGEM+ Sbjct: 538 ELVDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGE--KANYNIQRFKGLGEMM 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD RT+ RVEI L + LMG K R +FI+ ++ +D Sbjct: 596 PQQLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar fukuokaensis] Length = 632 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRERPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPALPKPG--IQRYKGLGEMSPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|193215259|ref|YP_001996458.1| DNA gyrase subunit B [Chloroherpeton thalassium ATCC 35110] gi|193088736|gb|ACF14011.1| DNA gyrase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 644 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 267/659 (40%), Positives = 373/659 (56%), Gaps = 22/659 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S S Y AS+I++L+G+E VR RP MYIG + LHHL E++DN++DE + Sbjct: 2 SEEVKEIEKSLEYGASNIQVLDGIEHVRRRPAMYIGDVGVRGLHHLVYEIVDNSVDEALG 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GY + I V + NG + V D GRGIP + HP+ N S L++++T + AGGKFD Y++S Sbjct: 62 GYNDYIFVQIKSNGSILVRDKGRGIPTDIHPQ-KNTSALQLVMTVIGAGGKFDKGAYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS+ V V R+ IF Q + +GIP +P+ GT+ TF P Sbjct: 121 GGLHGVGASVVNALSEWCEVEVYREGKIFFQGYEKGIPKAPVSVIGTTSE-NGTKTTFLP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF ++ F L + AYL+ + +++ ++EF+F GG++ Sbjct: 180 DESIFKNR-EFRYDTLADRMRELAYLNKNLTIVIEDERD-------GRRDEFHFKGGIQE 231 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330 ++ R + E + EK GT VE A + + E SY N I T EGGTH Sbjct: 232 FVTFMDSTRLKLIKEPIYFEGEKDGT---VVEIAFQYNDSYQENAFSYVNNINTHEGGTH 288 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR + Y + + + I +D ILSV + EP+F GQTKTKL Sbjct: 289 VTGFRKALTRTLNYYGQKNDLFKNLKISLTGEDFREGLTAILSVKVPEPQFEGQTKTKLG 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + Q VE+ + + Y+ Q+P E +LE V+ + R RK ++ RK+A+ Sbjct: 349 NSETQSIVESIVNEKLAEYIEQHPNEVKIILEKVVSAAIARDAARKAKDLTRRKSALESS 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILNV A K+ Sbjct: 409 SLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARLNKM 468 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N++I L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ M L Sbjct: 469 LENEEIRTLIMALGTSIGEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E +F+ PPL+ I G + YA D++ + IL++F+ GK I R+KGLGEM A Sbjct: 529 VEGGRVFIAQPPLYLIKSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNAD 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD KRTLL V I + + + LMG + + R FI+ A ++ + Sbjct: 589 QLWSTTMDPEKRTLLMVTIENAM----EADKIFSTLMGDQVEPRRAFIETNAKYVRRLD 643 >gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10] gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10] Length = 636 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 264/651 (40%), Positives = 378/651 (58%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL EV+DN++DE +AGY + I V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDIHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++P+E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GG+ Y++ + Sbjct: 179 FDPDVLEHRLREIAFLVPGLKIEFEDRINGEKKT-------FKFDGGIVEYVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + I+ +TEK G VE A + + +I S+ NTI T +GGTH + + Sbjct: 232 VFHDVIYMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKT 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y + K S +D+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 MLTRLMNEYGKKHGFLKGDDSFQGEDVREGLTAVVSVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 + +RD NP +L ++ + R R+ RE+ RK ++ LPGKLA Sbjct: 352 INRVMRDELKKIFDANPELVKTILSKIMSTKQAREAARRAREMVRRKNVLQNTTLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +K+ N+QI Sbjct: 412 DCSSTDREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDKLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + E LRY ++IIMTDAD+DGAHI +LLLT FY+ M LIEQ +++ Sbjct: 472 DIIVAVGTGIGDDFDEGKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + + + E+ + +IEI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIKAGKEEFYVYSDLELMEYKEKLQG---KRIEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L] Length = 640 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 259/650 (39%), Positives = 376/650 (57%), Gaps = 23/650 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ IEV++ Sbjct: 7 KDYGAEQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEVVDNSVDEALAGFCTHIEVTI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV H K +E++LT LHAGGKF Y ISGGLHGVGISV Sbjct: 67 EADNSITVSDNGRGIPVAMHK--VGKPAVEVVLTVLHAGGKFGGDGYPISGGLHGVGISV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219 VNALS + V V R N ++ F+RGI L K + + GT + F+PDP+IF D Sbjct: 125 VNALSIQTEVKVKRDNYLWDISFARGITEKKLTKTRALEPGEETGTTVHFKPDPEIFPDV 184 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ + + ++E ++E + + GGL +++Q EN Sbjct: 185 V-YDFDTLKTRLRELAFLNKGLHITLTDNREHN------KQEVYCYEGGLISFVQFLNEN 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + + EK V+ A+ + + I ++ N I T+EGGTH SG R AL Sbjct: 238 KQAVHPTVIPLDGEKNQVM---VDIAMQYNDGYSENILTFVNDIFTEEGGTHLSGFRSAL 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I Y + ++ +D+ I+SV +REP+F GQTKTKL + + + V Sbjct: 295 TRTINDYGRSAGIIKENEDNLSGEDVREGLTAIVSVKVREPQFEGQTKTKLGNSEVKGIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 + + D + ++P+EA ++ I S R R+ RK A+ LPGKLAD Sbjct: 355 DTLVSDGLREFFGEHPVEAKSIVNKTITASRARQAARRARELTRRKNALEISSLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ + TE+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI N++I Sbjct: 415 CSEKSSERTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRA 474 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY+K+IIMTDADVDGAHI +LLLTFFY+ M LI + H+++ Sbjct: 475 MITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIA 534 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G + Y + +E L+E + I + R+KGLGEM QL ET MD Sbjct: 535 QPPLYQVRKGKQMWYFYTDETMNAKLDELGRD-TNNIVVQRYKGLGEMNPEQLWETTMDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + + LMG K + R +FIQE A + ++ Sbjct: 594 EYRTMLQVHLEDAV----EADRIFSVLMGDKVEPRRQFIQENAKKVRNLD 639 >gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293] gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293] Length = 636 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 239/648 (36%), Positives = 373/648 (57%), Gaps = 19/648 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y A +I++L+GL+ VR RPGMYIG T + LHHL E++DN++DE +AG+ + I V + Sbjct: 3 NSYSAQNIQVLKGLDAVRKRPGMYIGSTGPEGLHHLVYEIVDNSIDEALAGFCDEILVVI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIP + H K S LEI++T LHAGGKF+ TY++SGGLHGVG+SV Sbjct: 63 EKGNIIRVEDNGRGIPTDLH-KEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ V V R +IF QK+ RG P + + GT F+PD +IF Sbjct: 122 VNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRH-GTITRFKPDGEIFETV-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + + A+L+ ++ ++ +K F F GG+K+++ E++ Sbjct: 180 FSFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKE-----FQFEGGVKSFVSFLSESKK 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I E + + G +E A+ + E I S+ N I T EGGTH G + ALTR Sbjct: 235 PIHKEPIYFEGIRDGI---DLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTR 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + + ++ K + DD+ ++SV + +P+F GQTK KL + + + VE+ Sbjct: 292 TFNDFLKKSKFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVES 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +Y +NP K+LE + + R+ + RK+A+ LPGKLADC+ Sbjct: 352 LVAEHLTYYFEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCA 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E++IVEGDSAGGSAKQ R+R QA+LPL GK+LNV ++K+ N ++ ++ Sbjct: 412 EKDPSKSEVYIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPII 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 LG ++ +RY KVIIM DADVDG+HI +LLLTFF++ M +L+E+ ++++ P Sbjct: 472 ATLGAGAGKEFDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G YA+DE ++KI++ K+ I R+KGLGEM +QL ET MD + Sbjct: 532 PLYKMQLGKSITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDS 591 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R +++V + + + + LMG + R KFI++ A + ++ Sbjct: 592 RKIMQVRLEDAV----EADQIFSTLMGEDVEPRRKFIEDNALMVSNLD 635 >gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991] gi|158433357|gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991] Length = 648 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 254/662 (38%), Positives = 377/662 (56%), Gaps = 21/662 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 ++ + N +Y A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++ Sbjct: 4 KQMKEIEEMENGKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSI 63 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A IE++++ + + V DNGRG+PV K S +E I T LHAGGKF Sbjct: 64 DEALAGFATDIEIAIEKDNVIRVEDNGRGMPVGIVEK-TGISGVETIFTVLHAGGKFGGG 122 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG SVVNALS+ L VTV + +F G S K +K G+ Sbjct: 123 AYKVSGGLHGVGASVVNALSEWLEVTVHQNGKKHFLRFENGGKPSGALKVIGDTDKHGSV 182 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+ D IF + + L + A+L+ ++ ++E K + + Sbjct: 183 VRFKADASIFTETQVYSFDTLNTRIRQLAFLNKGIRLVIIDEREEEAKRIE-----YKYD 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ Y++ +N++++ ++ + ++G E A+ + + P I S+CN I T Sbjct: 238 GGIRQYVEYLNKNKNVLHEDVIYVEGLEEGIL---AEVALQYNDGYMPNIYSFCNNINTM 294 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 EGGTHE G R+ALTR I YA K+ ++ DD+ I+SV +P++ GQTK Sbjct: 295 EGGTHEDGFRLALTRVINAYARENNLIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTK 354 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + + ++ V L D + +L++NP A ++E + S+ R+ +K RE RK+A Sbjct: 355 TKLGNSEVRKIVSGILGDQLERFLIENPTTAKIIVEKGVLASKARMAAKKARELTRRKSA 414 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADCS A E++IVEGDSAGGSAKQ RN QA+LPLRGKILNV A Sbjct: 415 LEITSLPGKLADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKAR 474 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +I N +I +V A GC + LRY K++IMTDADVDGAHI +L+LTFFY+ + Sbjct: 475 LHRIFENNEIRSMVTAFGCGIGDEIDISKLRYHKIVIMTDADVDGAHICTLMLTFFYRFL 534 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +IE ++++ PPLF++ +G + Y + EE +++ E ++ + + R+KGLGEM Sbjct: 535 RPVIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEMERVRAEMGEN----VNVQRYKGLGEM 590 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL ET MD RTL +V I + + LMG + + R +FIQE A + Sbjct: 591 NPEQLWETTMDPAFRTLKQVNIEDAV----EADAIFEMLMGEEVEPRREFIQENAKYAT- 645 Query: 684 VG 685 + Sbjct: 646 LD 647 >gi|256838953|ref|ZP_05544463.1| DNA gyrase, B subunit [Parabacteroides sp. D13] gi|262382583|ref|ZP_06075720.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B] gi|256739872|gb|EEU53196.1| DNA gyrase, B subunit [Parabacteroides sp. D13] gi|262295461|gb|EEY83392.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B] Length = 651 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AGY I Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV D+GRGIPV+ H K KS LE++LT LHAGGKFD TY++SGGLHGV Sbjct: 66 DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R + Q+FS G PL ++ + +K GT I+F+PD IF Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F+ GLK +++ Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + + SY N I T EGGTH +G R Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYAE ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI ++ R RK RE+ ++ + + LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A KI +++I Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ E LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y E+ +Q+ + ++ + I R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ + + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|237738561|ref|ZP_04569042.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31] gi|229424044|gb|EEO39091.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31] Length = 639 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 253/648 (39%), Positives = 377/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY N I+V + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V ++ ++ QK+ RG P ++ ++ GT + F+ D IF Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEASEHGTTVRFKADGDIFETLV- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K E + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKEET 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIDKPFYVSAEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ V I+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSNSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++ P Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G + +YA+++ + IL + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVASGKQIIYAYNDLELKNILAQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|87301672|ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701] gi|87283889|gb|EAQ75843.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701] Length = 652 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 257/649 (39%), Positives = 372/649 (57%), Gaps = 15/649 (2%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ + I V L Sbjct: 11 YGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCDEILVRLCE 70 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++SGGLHGVGISVVN Sbjct: 71 DGSAEITDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGLHGVGISVVN 129 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ + VTV RQ + Q+F RG P+ L ++ GT + F+PD +IF FD Sbjct: 130 ALSEWVEVTVRRQGQVHRQRFERGTPIGSLRSEDDPSGATGTAVRFKPDIEIFSGGIDFD 189 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 A L + AYL+G V+ + ++E A+ G P +E +++ GG++ Y+ + Sbjct: 190 YATLSGRLRELAYLNGGVRIVFRDEREAAKGSDGSPHEEIYHYEGGIREYVTYMNAGKDP 249 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + +I K G + + I + N I T +GGTH GL+ LTR + Sbjct: 250 LHPDIIYVNASKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLKTVLTRTL 308 Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +A+ ++ ++ +++ +LSV + +PEF GQTKTKL + + + V++ + Sbjct: 309 NTFAKKRGKRKDTDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSVV 368 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + +L +P +LE I+ R+ RE V RK+ + LPGKLADCS Sbjct: 369 GEALGEFLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 428 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 429 DPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITG 488 Query: 520 LGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 LG + + LRY +++IMTDADVDGAHI +LLLTFFY+ L+E ++++ PP Sbjct: 489 LGLGIKGEEFNLSALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEGGYIYIACPP 548 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ +G Y ++E+ +K L+ F + K I RFKGLGEM+ QL ET MD R Sbjct: 549 LYKVERGKNHTYCYNEQDLKKTLDGFGE--KANYTIQRFKGLGEMMPKQLWETTMDPTTR 606 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 T+ RVEI + LMG K R +FI+ ++ +D + Sbjct: 607 TMKRVEIED----AAEADRIFTILMGDKVAPRREFIETHSAELDFAQLD 651 >gi|302384449|ref|YP_003820271.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1] gi|302195077|gb|ADL02648.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1] Length = 637 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 262/650 (40%), Positives = 384/650 (59%), Gaps = 20/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + IEV Sbjct: 2 SQEYGADQIQILEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNAVDEALAGYCDSIEVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +TVVD+GRGIPV K +E+ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 IHPDNSVTVVDDGRGIPVGIQKKA-GIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V + + I+ Q++ +G + PL+ + ++ GT++TF PD +IF + Sbjct: 121 VVNALSQWLEVEIRQDGKIYKQRYEKGKTMYPLKVIGECGPDEHGTKVTFLPDGEIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ +K ++E + F++ GG+K ++ + Sbjct: 181 V-YDYDTLKIRLRETAFLTKNLKIILRDEREDKHE------HVFHYEGGIKEFITYLNKG 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + ++F + K G + VE A+ + I S+ N I T EGGTH +G + AL Sbjct: 234 KTPLYDQVFYCEGTKDGVY---VEVAMQHNDSYTENIYSFVNNINTPEGGTHLAGFKNAL 290 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T + YA + + ++ +D+ I+SV I EP+F GQTK KL + +A+ V Sbjct: 291 TTTLNDYARKNRLLKENETNLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 +N LR+ F +YL QNP + + + ++ + R+ + RKTA+ + LPGKLAD Sbjct: 351 DNLLREQFTYYLEQNPSLSKTICDKSILAQRARAAARKARDLTRRKTALEGMALPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 411 CSDKNPENCEIYIVEGDSAGGSAKTARSRNTQAILPLRGKILNVEKARLDKIYANAEIKA 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L Sbjct: 471 MITAFGTGIHEDFDLSKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ +E IL+E + K I R+KGLGEM A QL ET MD Sbjct: 531 QPPLYKVEKNKKVWYAYSDEELNAILKEIGRDNNNK--IQRYKGLGEMDAEQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV +N+D S + + LMG + + R +FI+ A ++ ++ Sbjct: 589 ERRVLLRVIMNEDTTS--EMDLTFTTLMGDQVEPRREFIEANAKYVQNLD 636 >gi|189499015|ref|YP_001958485.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1] gi|189494456|gb|ACE03004.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1] Length = 644 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 266/657 (40%), Positives = 378/657 (57%), Gaps = 25/657 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 ++ Y+A++I+IL+G+E VR RP MYIG + LHHL E++DN++DE +AGY Sbjct: 5 QKNTSPQAYEATNIQILDGIEHVRKRPAMYIGDLHSRGLHHLIYEIVDNSIDETLAGYNE 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IE+SL+ +G +TV DNGRGIPV+ HP+ KS LE+++T + AGGKFD Y++SGGLH Sbjct: 65 SIELSLNPDGSVTVTDNGRGIPVDIHPQ-KKKSALELVMTLIGAGGKFDKGAYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS+ V V R+ I+ Q++ +GIP +E + GT+ TF PDP I Sbjct: 124 GVGASVVNALSEWCEVEVYREGNIWFQRYHKGIPQRDVEVIGESTK-TGTKTTFMPDPDI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F ++ + A+L+ +K +E F++ GG+K ++ Sbjct: 183 F-KITEFRKDIVVDRMRELAFLNNILKIVVKD--------IDGSEETFHYEGGIKEFVTF 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 NR + E E+ T VE A+ + + + SY N I T EGGTH +G Sbjct: 234 TDHNRISLLKEPVYISGERDST---VVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGF 290 Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + YA+ + + + DD I+SV + EP+F GQTKTKL + + Sbjct: 291 RKALTRTLNSYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSET 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 Q VE+ + + + NP ++E V + R RK ++ RK+A+ LPG Sbjct: 351 QSIVESIVNEQLSDFAESNPGVLKTIIEKVKSAALSRDAARKAKDLTRRKSALESSGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ N+ Sbjct: 411 KLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENE 470 Query: 512 QIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE Sbjct: 471 EIKTIILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQL 628 +F+ PPL+ I G + YA D++ + I+E +K G+G I I R+KGLGEM QL Sbjct: 531 KVFIAQPPLYLIKSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD R+LL+V + + + + LMG K + R FI++ A ++ + Sbjct: 591 WSTTMDPEHRSLLQVSVENAM----EADQVFSTLMGDKVEPRRNFIEKNARYVRRLD 643 >gi|150010130|ref|YP_001304873.1| DNA gyrase subunit B [Parabacteroides distasonis ATCC 8503] gi|149938554|gb|ABR45251.1| DNA gyrase, B subunit [Parabacteroides distasonis ATCC 8503] Length = 651 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AGY I Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV D+GRGIPV+ H K KS LE++LT LHAGGKFD TY++SGGLHGV Sbjct: 66 DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R + Q+FS G PL ++ + +K GT I+F+PD IF Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F+ GLK +++ Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + + SY N I T EGGTH +G R Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYAE ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI ++ R RK RE+ ++ + + LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A KI +++I Sbjct: 419 ADCSSKDASICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ E LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y E+ +Q+ + ++ + I R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ + + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10] gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10] Length = 637 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 375/648 (57%), Gaps = 21/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YD S I++LEGLE VR RPGMYIG T+E+ LHHL E++DN++DE +AG+ + I V++ Sbjct: 6 QSYDESQIQVLEGLEAVRKRPGMYIGSTNERGLHHLVWEIVDNSIDEAMAGHCSHIWVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV D+GRGIPV H K + +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 66 EEDNTITVEDDGRGIPVGIHEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V ++ + F RG L GT I F+ D IF + Sbjct: 125 VNALSSFLEVEVHKEGEVHYISFERGAVKEELNVIGSTEK-TGTLIRFKADNMIFTETTV 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + ++L+ + + +E + ++++ GG+ ++++ ++ Sbjct: 184 YDFDVLANRLRELSFLNKGLTIEITDKRE------EDKSAKYFYEGGISSFVEHLNRTKT 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++EK+G VE A+ + + + S+ N I T EGGTHESG + ALTR Sbjct: 238 ALHEPPIFIESEKEGIQ---VEVAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++I DD+ I+SV I P+F GQTKTKL + +A+ ++ Sbjct: 295 VINDYARKNGLFKENDPNLIGDDVREGLTAIVSVKIENPQFEGQTKTKLGNSEARTITDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + ++ +NP A +++E I S R +K RE RK+A+ LPGKLADCS Sbjct: 355 LFTEHMAKFMAENPTVARQIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A +E+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI N +I ++ Sbjct: 415 TKDASISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAII 474 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG ++ RY K+IIMTDADVDGAHI +LLLTF Y+ M LIE+ ++++ P Sbjct: 475 TALGTGIGEEFDITKARYHKIIIMTDADVDGAHIRTLLLTFLYRYMRPLIEEGYIYIAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++I QG YA +E+ ++IL E K + R+KGLGEM +QL ET MD Sbjct: 535 PLYQIKQGKAVHYAFNEKEMERILGELSASPKPG--LQRYKGLGEMNPTQLWETTMDPAT 592 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + + LMG + + R FIQE A ++ ++ Sbjct: 593 RTLLQVSLKDAM----LADEVFETLMGDRVEPRRDFIQENAHYVKNLD 636 >gi|301308180|ref|ZP_07214134.1| DNA gyrase, B subunit [Bacteroides sp. 20_3] gi|300833650|gb|EFK64266.1| DNA gyrase, B subunit [Bacteroides sp. 20_3] Length = 651 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 264/658 (40%), Positives = 388/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AGY I Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV D+GRGIPV+ H K KS LE++LT LHAGGKFD TY++SGGLHGV Sbjct: 66 DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R + Q+FS G PL ++ + +K GT I+F+PD IF Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFT 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F+ GLK +++ Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEIFHSDEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + + SY N I T EGGTH +G R Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYAE ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI ++ R RK RE+ ++ + + LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A KI +++I Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ E LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y E+ +Q+ + ++ + I R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ + + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|294781815|ref|ZP_06747148.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA] gi|294481925|gb|EFG29693.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA] Length = 639 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 377/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY N I+V + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V ++ ++ QK+ RG P ++ N+ GT + F+ D IF Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEANEHGTTVRFKADGDIFETLV- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEET-----YKFNGGILDFLNEIVKEEA 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIDKPFYVSAEQDNV---GVDVTFTYTTSQNETIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ V I+S I +P+F GQTK KL + + V + Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNS 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSSSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEG+SAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGNSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M +LI + ++++ P Sbjct: 476 TAFGTSIGDTFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMRELINEGNIYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++ G + +YA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLAQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V ++ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSVD----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909] gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1] gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909] gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1] Length = 639 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 262/654 (40%), Positives = 387/654 (59%), Gaps = 19/654 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + YDAS+I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 1 MTQETTTQQYDASNIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ N + V DNGRGIPV+ H K KST+E + T LHAGGKF Y++SGGL Sbjct: 61 TEINVAITENNEIIVKDNGRGIPVDVH-KQTGKSTVETVYTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L VTV+R + Q F +G P++ L + + GT + F+PDP+ Sbjct: 120 HGVGASVVNALSEYLEVTVSRNGKKYFQSFEKGTPMNELHVIGE-SDTTGTEVKFKPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + A+L+ +K + P++ EF+F GG+ Y+ Sbjct: 179 IFTETTVYDYDILRNRIRELAFLNKGLKITLEDLRSEK-----PQRHEFHFEGGISEYVS 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 +N+ +I ++ + E+ G +VE A+ + I S+ N I T EGGTHE+G Sbjct: 234 FLNKNKEVIHEDVIYVEGERDGI---SVEIAMQYNTGVAGNIYSFANNINTHEGGTHEAG 290 Query: 334 LRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + I +D+ I+S +P+F GQTKTKL + + Sbjct: 291 FRAALTRIINSYAKKANLLKGDDALIGEDIREGLTAIISAKHPDPQFEGQTKTKLGNSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 +R +N + F+ +L++NP A +L+ + + R+ ++ V RK+ + L Sbjct: 351 RRIADNVFSEGFERFLMENPQAAKLILDKSLMAARARMAAKRAREMVRRKSPLESLGFKS 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC A+ +ELFIVEGDSAGGSAKQ R+ QA+LPLRGK+LNV A +K+ N Sbjct: 411 KLADCQSRDANISELFIVEGDSAGGSAKQGRDNKFQAILPLRGKVLNVEKARIDKVYANN 470 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A+G ++ E RY KV+IMTDADVDGAHI +LLLTFFY+ M LIE + Sbjct: 471 EIKSMIHAIGTGVGDEFDIEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIENGY 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I+QG + YA+ +E + ++E + + R+KGLGEM A QL ET Sbjct: 531 VYIAQPPLFKISQGKRIEYAYSQEELEAVMETLSATPR--PNVQRYKGLGEMNAEQLWET 588 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V ++ + + + + LMG + + R +FI A ++ ++ Sbjct: 589 TMDPEVRTLLQVTLDDAV----EADEIFDMLMGDRVEPRREFIDANAKYVTNLD 638 >gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641] gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641] Length = 645 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 379/653 (58%), Gaps = 18/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +YD I++LEGLEPVR RPGMYIG T E+ LHHL EV+DN++DE +AGY I+ Sbjct: 4 NKPSHYDGKDIQVLEGLEPVRKRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGYCTDIQ 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +G + V DNGRGIPV+ HPK + T+E++LT LHAGGKF Y++SGGLHGVG Sbjct: 64 VWICDDGSIKVQDNGRGIPVDKHPK-EHIPTVEVVLTILHAGGKFGGEGYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS ++ V V R + FSRG + L + GT + F PDP+IF + Sbjct: 123 VSVVNALSTQMKVQVCRDGKRYEITFSRGKTVEKLHVVGDSK-HTGTTVRFWPDPEIFTE 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L+ +K ++E+ + + + E F F G+K +++ Sbjct: 182 TTVFNYNTLAERFREMAFLNKGLKITLYDERELDGEG-VAKHETFQFQDGIKDFVKFLTT 240 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + +++++ + E G VE A+ W S+ N I T EGGTH G + Sbjct: 241 GKEVLNTKPIYFEAEG---PAGEVEVAMQWTSSFSTNSVFSFANNINTIEGGTHLDGFKQ 297 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR I YA ++ ++ DD ++SV + +P+F GQTKTKL + + ++ Sbjct: 298 AVTRTINDYAREKGILKEKDSNLTGDDCREGLSAVISVKLHDPQFEGQTKTKLGNSEMRQ 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKL 453 V +A+ YL +NP A +++ + + R RK RE+ RK + LPGKL Sbjct: 358 LVSSAVNQGLGEYLEENPTPAKRIINKASQALKAREAARKAREMTRRKNVLDSFALPGKL 417 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A E+FIVEGDSAGGSAKQAR+R QA+LPLRGKILNV AG + ++ I Sbjct: 418 ADCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 477 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G + E RY ++IIMTDADVDGAHI LLLTFFY+ M +LI + +++ Sbjct: 478 SSLITAVGTNIGDDFDAEKARYHRIIIMTDADVDGAHIQILLLTFFYRYMPELINRGYIY 537 Query: 574 LISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL+ I +G K + Y +++ + ++++ K + R+KGLGEM QL ET Sbjct: 538 IAMPPLYGIKEGKKKIRYVYNDNALAEAMKDYPTD--KKPSVQRYKGLGEMDPDQLWETT 595 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R L++V I + ++++LMG + + R ++IQ+ A + + Sbjct: 596 MEPETRILMQVGIED----AAAAERAVSELMGDQVEPRKEYIQKHAKDVRFLD 644 >gi|291521103|emb|CBK79396.1| DNA gyrase subunit B [Coprococcus catus GD/7] Length = 636 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 374/649 (57%), Gaps = 19/649 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y AS I+ILEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + IEV+ Sbjct: 2 SEGYGASQIQILEGLEAVRKRPGMYIGSTSAKGLHHLVYEIVDNSVDEALAGYCDHIEVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVDNGRGIPV K +E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INKDNSITVVDNGRGIPVGIQAKAHK-PAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V V + Q++ RG + L+K RGT + F PD +IF + Sbjct: 121 VVNALSEWLEVNVYVDGYEYYQRYERGKVMCELQKIGPTEK-RGTTVHFLPDKEIFEETV 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + + A+L+ ++ + +E P F++ GG++ Y+ + Sbjct: 180 -FDYKVLKQRLREIAFLTKGLRISLTDVREE-----EPILSSFHYEGGIREYVAYLNKAN 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + EI + EK G VE A+ + + S+ N I T EGGTH G+R ALT Sbjct: 234 TPLYDEIIYCEGEKDGVL---VEVALQHNDGYNENVYSFVNNITTPEGGTHLVGMRSALT 290 Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + +D+ I+S+ I EP+F GQTK KL + +A+ VE Sbjct: 291 KTFNDYARKNKLLKDNEQSLTGEDIREGLTAIVSIKIGEPQFEGQTKQKLGNSEARGAVE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + D +L QNP ++E + R RK R+ RK A+ + LPGKLADC Sbjct: 351 SIVSDKLGVFLEQNPAIGKLIVEKSVMAQRARDAARKARDLTRRKGALDSMSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I + Sbjct: 411 SDKDPAKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKILVNNEIKAM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI + +++L Sbjct: 471 ITAFGTGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAK 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I + K YA+ ++ IL E + K I R+KGLGEM A QL ET MD Sbjct: 531 PPLYKIERNKKEWYAYSDDELNAILTEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R L+RV ++ ++ + LMG K + R +FI++ A ++ ++ Sbjct: 589 RRILMRVSMDDAEK--VSIDETFSVLMGDKVEPRREFIEKNAKYVRNLD 635 >gi|319407212|emb|CBI80851.1| topoisomerase protein [Bartonella sp. 1-1C] Length = 692 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 431/695 (62%), Positives = 533/695 (76%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFSTLPPQSQG--SSEKLKKSGEIP-------DSPAFANQSASDNYDASSIRI 51 M+D++ DLFS L + EK K P + N+ Y+A SIRI Sbjct: 1 MSDNNKDLFSILNNAQSRIDAKEKNKPISVTPQETSLAISTSESKNEIKEGEYNALSIRI 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD G+LTV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDKQGYLTVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR ++ Q+FSRGIP S LE + N+RGTR+ F PD KIFG+ F+ ++ KMT Sbjct: 181 EVARDRKLYRQRFSRGIPQSSLENLGDIYNRRGTRVRFHPDSKIFGENVAFEPEQIYKMT 240 Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G VK W+CD ++ E +PEK+ FYFP GLK YL + L+N ++SE+F+G Sbjct: 241 RSKAYLFGGVKIRWNCDPKMLEGIKNVPEKDVFYFPDGLKDYLLSSLKNEYRVTSEVFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KT++ G+H G+VEWAIAW N + SYCNTI T EGGTHE+GLR AL RG+K YAEL Sbjct: 301 KTKQHGSH-GSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKR+ I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L Sbjct: 360 NKRSAIITSDDVMISAIVILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL+W++ER+EER++RR+ +E+NRKT +RKLRLPGKLADCSQN A G ELFIVE Sbjct: 420 SPQEATKLLDWIVERAEERVKRRQDKEINRKTTVRKLRLPGKLADCSQNSAIGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR NQA+LPLRGKILNVASA EK+ +Q I DL+ ALGC TRS+YRE Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAHEKMSASQTINDLILALGCGTRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K Y Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMTDLIRQGHLYLAVPPLYRISQGGKVAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L+ + GK KIEI RFKGLGEM A QLKET MD KRTLLR+ I D Sbjct: 600 ARDDNHKDELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMDPQKRTLLRIAI--DAV 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +++T++++ LMGTK + RF+FIQE ++F D++ Sbjct: 657 DMQETKNTVESLMGTKPEARFRFIQENSTFADNLD 691 >gi|312878944|ref|ZP_07738744.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260] gi|310782235|gb|EFQ22633.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260] Length = 635 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 243/652 (37%), Positives = 368/652 (56%), Gaps = 23/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ + Y A I++LEGLE VR RPGMYIG + LHHL EV+DNA+DE +AG + + Sbjct: 2 EAPASQYTAKDIQVLEGLEAVRKRPGMYIGDQGPRGLHHLVYEVVDNAIDEAMAGVCDTV 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ G ++VVDNGRGIP E H KS E++LT LHAG KFD Y++SGGLHGV Sbjct: 62 YVTIHPEGSVSVVDNGRGIPTEIHA-ATGKSAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L VT+ R Q+F RG ++ L + + ++RGT++ F PD +IF Sbjct: 121 GVSVVNALSEWLEVTIWRNGREHRQRFERGAAVTEL-QTGEDTDRRGTKVQFMPDEEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + LL + A+L+ + + + ++ ++F GG+ ++ + Sbjct: 180 TL-DFSSETLLGRLRELAFLNPGITIHFQDLR-----QDPILEKHYHFEGGIASFAEYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + ++ + EK V+ A+ + + + ++ N I T EGGTH SG R Sbjct: 234 RGKEVLFKPPVVVRGEKDNV---VVDVALQYNDTYLERVFAFANLINTVEGGTHVSGFRT 290 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + A + + + DDL ++SV + EP+F GQTKTKL + D + Sbjct: 291 ALTRAVNDQARKEKILKDKDPNFTGDDLKEGLTAVVSVKLLEPQFEGQTKTKLGNGDVKG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + L + +++ + + R +K R+ V RK+A+ L LPGKL Sbjct: 351 IVDSVVYEGLKALLEERADILKPVVDKAVRARQAREAAKKARDLVRRKSAMSGLDLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEG+SAGGSAK RNRS QA+LPLRGKILNV A +KI +N+ + Sbjct: 411 ADCSNRNPEECEVYIVEGESAGGSAKMGRNRSFQAILPLRGKILNVERARLDKILSNEMV 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++QALGC + LRY K+ +M DADVDGAHI +LLLT F++ M +IE HL+ Sbjct: 471 RTIIQALGCGVGDDFDYAKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ +G Y ++ + + ++ K ++ + R+KGLGEM QL ET M Sbjct: 531 VAQPPLYRVQEGKTVHYCFSDKELKTLTDKASK----RVSVQRYKGLGEMNPEQLWETTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R + RVE++ + + LMG + R +FI+ A + ++ Sbjct: 587 DPANRIIKRVEVDDAVT----ADELFGILMGDAVEPRREFIETHAKEVRNLD 634 >gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989] gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989] Length = 655 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 254/656 (38%), Positives = 378/656 (57%), Gaps = 24/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +Y A I++LEGLE VR+RPGMYIG T + LHHL E++DN +DE +AG+A Sbjct: 18 SQATQVEHSYTADDIQVLEGLEAVRLRPGMYIGSTSARGLHHLVWEIVDNGIDEALAGFA 77 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I+V+++ + + V DNGRG+PV H K S +E I+T LHAGGKF Y++SGGL Sbjct: 78 NRIDVTIEPDNIIAVRDNGRGMPVGIHEK-TGISAVETIMTVLHAGGKFGGGAYKVSGGL 136 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS+ L VTV + I+ +F G + PL+ + GT + F+ D Sbjct: 137 HGVGASVVNALSEWLEVTVFQDGKIYFIRFENGGHAVEPLKVIGETTE-TGTLVRFKADS 195 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF D +D L + A+L+ ++ + + ++ + GG+ Y+ Sbjct: 196 QIFKDTTVYDYEILNSRLRQLAFLNKDIRLTLTDKRTPD-----GLSNDYKYEGGIIEYV 250 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q +N+S IS ++ + + G E A+ + + I S+CN I T EGG HE Sbjct: 251 QFLNKNKSTISDKVIYVEGLQDGIL---AEVALQYNDGYQSSIYSFCNNIHTHEGGYHED 307 Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G R+ALTR I YA+ K+ ++ DD+ V I+SV +P++ GQTKTKL + + Sbjct: 308 GFRMALTRCINTYAKNNNMIKKDETLSQDDVKEGLVAIISVKHPDPQYEGQTKTKLGNSE 367 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449 ++ V N + + + ++NP A ++E S+ R+ +K RE+ R+ + L Sbjct: 368 VRKIVSNIAGEQINRFFLENPDIAKAIVEKAEIASKARIAAKKARELTRRKSALDGISSL 427 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS A E++IVEGDSAGGSAKQ R+ QA+LPLRGKILNV A + +I Sbjct: 428 PGKLTDCSSKDASECEIYIVEGDSAGGSAKQGRDAKTQAILPLRGKILNVEKARTHRIFE 487 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ+I ++ A GC + LRY K++IMTDADVDG+HI +L+LTF Y+ M +IE Sbjct: 488 NQEIRSMITAFGCGIQEDVDVSKLRYHKIVIMTDADVDGSHICTLMLTFLYRFMKPVIEG 547 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ +G K YA+ E+ ++ EEFK ++ R+KGLGEM A QL Sbjct: 548 GYVYIAQPPLYKVQKGKKIAYAYKEQEMDQLREEFKD----GYKVQRYKGLGEMDAEQLW 603 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD + R L RV I+ + + + LMG + R ++IQE A + ++ Sbjct: 604 ETTMDPHHRVLKRVTIDDAM----EADSVFDMLMGEDVEPRREYIQENAVYA-NLD 654 >gi|86141195|ref|ZP_01059741.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217] gi|85831754|gb|EAQ50209.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217] Length = 646 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 256/660 (38%), Positives = 385/660 (58%), Gaps = 24/660 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AG+ Sbjct: 1 MSEEANKKQYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V ++ N ++V DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DSIKVIINENNSISVKDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L TV R I+ Q++ +G + P++ + RGT +TF PDP Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGKIWEQEYEKGKAMYPVKGIGDT-DDRGTAVTFLPDPS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + AYL+ +K + ++ EK E F+ GLK +++ Sbjct: 179 IFQTTTEYNYDTLASRMRELAYLNKGIKISLTDKRQKDEKGD-FVSETFHSEEGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR I E+ + + EK VE A+ + + + SY N I T EGGTH +G Sbjct: 238 FLDGNRQPIIGEVISMEGEKNDIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + + YL ++P +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VTSAVSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ E+F+VEGDSAGG+AK R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLADCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY+K++IM DADVDG+HIA+L+LTFF++ M + Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E H+++ +PPL+ + +G K YA E+ + + + G + + R+KGLGEM A Sbjct: 535 LVEGGHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMG----GSVSVQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMNPEFRTLRQVTIDNGT----EADRIFSMLMGDEVPPRREFIEKNAVYA-NID 645 >gi|226326150|ref|ZP_03801668.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758] gi|225205692|gb|EEG88046.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758] Length = 648 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 380/652 (58%), Gaps = 19/652 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + I+ Sbjct: 10 NMSAEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSVDEALAGYCDHIQ 69 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V ++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG Sbjct: 70 VFINPDNSITVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 SVVNALSD L V + + ++ Q++ +G + L+ ++ K GT++TF PD IF Sbjct: 129 ASVVNALSDWLEVEICHEGKVYRQRYEKGHVVYKLKVVDECDPEKTGTKVTFLPDETIFE 188 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D FD L + + A+L+ ++ + ++ P++ F++ GG+K ++Q Sbjct: 189 DTV-FDYDTLKQRFREMAFLTKGLRISLTDLRDE-----EPKERVFHYEGGIKEFVQYLN 242 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 +++ + +I + K VE A+ + + T + N I T EGGTH G R Sbjct: 243 RSKTPLYEQIIYCEGTKDNV---EVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRN 299 Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+T+ YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ Sbjct: 300 AITKTFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARG 359 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V++ + +L QNP ++E V+ + R+ + RK+A+ + LPGKL Sbjct: 360 AVDSIVSSQLQIFLEQNPAIGKSIVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKL 419 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I Sbjct: 420 ADCSDKDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEI 479 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++ Sbjct: 480 KAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVY 539 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+++ + K YA+ +E KI+ E + K I R+KGLGEM A QL +T M Sbjct: 540 LAQPPLYKLEKNKKVWYAYSDEELAKIISEVGRDQNNK--IQRYKGLGEMDAEQLWDTTM 597 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L RV ++ + + + LMG K + R +FI+E A F+ ++ Sbjct: 598 DPQHRILRRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKFVKNLD 647 >gi|160878167|ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg] gi|160426833|gb|ABX40396.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg] Length = 642 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 258/650 (39%), Positives = 386/650 (59%), Gaps = 15/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY N I+VS Sbjct: 2 SKDYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCNTIDVS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+DNGRGIPVE + K ST+E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INPDNSITVIDNGRGIPVETNKK-KGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VTV + ++ Q++ G + PL + ++ GT ++F PD IF + Sbjct: 121 VVNALSEWLEVTVELEGKMYKQRYECGKVIEPLRVVGE-SDRTGTTVSFLPDRSIFEETV 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + + A+L+ +K + E+ P +EF++ GG+K Y+Q ++ Sbjct: 180 -YDYDILKQRLREMAFLTKGLKIILRDLRTSEEEGNTEPNVKEFHYEGGIKEYVQYLNKH 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 +S + EI + + + VE A+ + S+ N I T EGGTH +G + A+ Sbjct: 239 KSNLYPEIIYCEGTRDSVY---VEVAMQHNDSYSESCYSFVNNITTPEGGTHYTGFKNAI 295 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ +A + ++ +D+ I+S+ + +P+F GQTK KL + +A+ V Sbjct: 296 TKTFNDFARQMKFLKDNETNLSGEDIREGLTAIISIKLPDPQFEGQTKQKLGNSEARAAV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++ + + ++L QNP A +LE + R RK R+ RKTA+ + LPGKLAD Sbjct: 356 DSVVSEQLTYFLEQNPSVAKIILEKAVLAQRARDAARKARDLTRRKTALEGMSLPGKLAD 415 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV + +KI N +I Sbjct: 416 CSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIKA 475 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI +++L Sbjct: 476 MITAFGTGISDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLA 535 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + + YA+ +E IL + + K I R+KGLGEM A QL ET MD Sbjct: 536 QPPLYKVEKSKQVWYAYSDEDLNNILLQIGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV++++ + + + LMG + R +FI+ A ++ ++ Sbjct: 594 ERRVLLRVKMDE--ENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKNLD 641 >gi|294677614|ref|YP_003578229.1| DNA topoisomerase IV subunit B [Rhodobacter capsulatus SB 1003] gi|3128305|gb|AAC16157.1| DNA gyrase subunit b [Rhodobacter capsulatus SB 1003] gi|294476434|gb|ADE85822.1| DNA topoisomerase IV, B subunit [Rhodobacter capsulatus SB 1003] Length = 652 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 343/652 (52%), Positives = 449/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + S+ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DNAMDE +AG+AN Sbjct: 7 SSTPSETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNAMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV ++ +G +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF N Y SGGL+G Sbjct: 67 IEVEVNADGSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSNKAYSTSGGLNG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR ++ Q+FSRG+P P+ K N+RGT +TF PDP+IF Sbjct: 127 VGSSVVNALSDLMVVQVARNKELYEQRFSRGVPQGPVAKLGAAPNRRGTTVTFHPDPEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G ARL KMT+SKAYL V+ W K P + F+FP GL YL Sbjct: 187 GS-LSLKPARLFKMTRSKAYLFSGVEIRW---KTAIADGDTPTEATFHFPNGLADYLAEA 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L S S + F G E+K G+VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 243 LTGASTYSDKPFAGRVSFEEKYNIPGSVEWAINWTPVRDGFIHSYCNTVPTPEGGTHEAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GI+ Y E NK+A I +D++ ++S+FIREP F GQTK +L + +A Sbjct: 303 FWAAILKGIRAYGERINNKKAAQITREDMLTGGCALISIFIREPSFVGQTKDRLSTEEAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VENA+RD FD +L + A +L++++ R+EERLRR+ ++E +RK+A +KLRLPGKL Sbjct: 363 RWVENAVRDYFDTWLTTDTKAAGAILDFLVLRAEERLRRKAEKETSRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A S K+ NQ+I Sbjct: 423 VDCSATNREGTELFIVEGDSAGGSAKMARDRTMQALLPLRGKILNVLGAASSKLGQNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG +++R +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+ Sbjct: 483 NDLAQALGVGLGTKFRVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K +Y D+ K + + G+GKI++ RFKGLGEM A LK+T M Sbjct: 543 LACPPLYRLTQGAKRIYVADDAEKDVWMAK-GLGGRGKIDVQRFKGLGEMDAKDLKDTTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L+RV I+ + +T D + +LMG K + RF++I E A F++++ Sbjct: 602 NPATRKLIRVTIDDEF--AGETDDLVERLMGKKPELRFQYITENARFVEELD 651 >gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 378/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 632 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 263/646 (40%), Positives = 379/646 (58%), Gaps = 21/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS++ Sbjct: 4 YDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEE 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 64 DNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 122 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + ++ Sbjct: 123 ALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEYE 181 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ I Sbjct: 182 FDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSKQPI 235 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342 E + K G VE A+ + E S+ N I T EGGTHE G + ALTR I Sbjct: 236 HEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVI 292 Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E+ Sbjct: 293 NDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVF 352 Query: 401 RDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADCS Sbjct: 353 SEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSK 412 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +E++IVEGDSAGGSAKQ R+ QA+LPL+GKI+NV A +KI +N ++ ++ A Sbjct: 413 DPAISEIYIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDEVRTIITA 472 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G + E RY KVIIMTDADVDGAHI +LL TFFY+ M +IE ++++ PPL Sbjct: 473 IGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYIYIAQPPL 532 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 F++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD R+ Sbjct: 533 FKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPEVRS 590 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + + + ++ LMG K + R FIQE A F+ ++ Sbjct: 591 LLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKFVKNLD 632 >gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916] gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916] Length = 655 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 264/661 (39%), Positives = 378/661 (57%), Gaps = 18/661 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 SEIQVVLAEDGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG + E+ + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGKVHRQRFERGAAIGSLRSEEQPAEENGLTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + ++E A P +E +++ GG+K Sbjct: 181 DIQIFTGGIVFDYATLAARLRELAYLNGGVRIVFRDEREAARTPEGEPHEEIYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y+ + + + +I +EK G + + I + N I T +GGTH Sbjct: 241 EYVAYMNKEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V+N + + +L NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ +G Y ++E+ QK L F + K I RFKGLGEM+ + Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPE--KANYNIQRFKGLGEMMPA 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DV 684 QL ET MD RT+ RVEI L + LMG K R +FI+ ++ +D ++ Sbjct: 598 QLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELDMTNL 653 Query: 685 G 685 Sbjct: 654 D 654 >gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] Length = 632 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 383/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGM IG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMCIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENARYVKNLD 632 >gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar graciosensis] Length = 632 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 384/649 (59%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL ++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWGIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ + ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E] gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E] Length = 646 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 261/663 (39%), Positives = 377/663 (56%), Gaps = 22/663 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + A A+ +Y A IR+LEGLE VR+RPGMYIG T + LHHL EV+DN++ Sbjct: 1 MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ IEVSL+ +G TVVDNGRGIP H K +E++LT LHAGGKF Sbjct: 61 DEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMHE--TGKPAMEVVLTVLHAGGKFGGE 118 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y ISGGLHGVGISVVNALS+ V V R F RG + + GT Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVTESMRTYGETSE-TGTT 177 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF+PDP IF + FD L + A+L+ ++ S +++ + EEF++ Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRV-----EEFHYA 232 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+ +++ E + + ++ + + E+ V+ A+ + + ++ N I T Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKII---VDIAMQYQTGYSESMYTFVNDINTT 289 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383 EGG H SG R ALTR I YA + ++ DD+ ++SV + P+F GQT Sbjct: 290 EGGMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQT 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL +L+ + V+N + + YL ++P EA ++E I S R ++ RE RK Sbjct: 350 KTKLGNLEVKGVVDNIVSEGLHIYLEEHPAEARLIVEKGITASRAREAAKRARELTRRKN 409 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKL+DCS+ TE++IVEGDSAGGSAK R+R QA+LPLRGKILNV A Sbjct: 410 ALEVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKA 469 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ N+ I ++ A G + LRY K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 470 RVDRVLNSDTIRMMITAFGTGVSEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRY 529 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M LI + H+++ PPL+++ +G + Y +D++ + K+L+E + G I R+KGLGE Sbjct: 530 MKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDG---CTIQRYKGLGE 586 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL T M+ +R ++RVE+ + + LMG K + R KFI+E A + Sbjct: 587 MDPEQLWNTTMNPEQRVMMRVELTDAV----EADRLFTILMGDKVEPRRKFIEENAMNVT 642 Query: 683 DVG 685 ++ Sbjct: 643 NLD 645 >gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145] gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145] Length = 652 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 378/654 (57%), Gaps = 20/654 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AGY I Sbjct: 6 EKNSNYSADNIQVLEGLEAVRKRPAMYIGDTGVKGLHHLVYEVVDNSIDEALAGYCTDIL 65 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ N +TV DNGRGIP + K NKS LEI++T LHAGGKFD TY++SGGLHGVG Sbjct: 66 VTIHKNNSITVEDNGRGIPTGINKK-ENKSALEIVMTVLHAGGKFDKDTYKVSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS + V R+ IF+Q++ RG PL ++ + ++ GT TF+PDP+IF Sbjct: 125 VSCVNALSTHVITVVHREGKIFTQEYERGKPLFDVKVIGE-SDRTGTIQTFQPDPEIFTQ 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L + A+L+ ++ + ++E+ E EEFY GGL+ ++ Sbjct: 184 TTEYRFDTLAGRLRELAFLNKGIRLVLTDEREVKEDG-SFLSEEFYSEGGLREFVTFLDS 242 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 R+ + + + EK G VE A + I SY N I T EGG+H +G R Sbjct: 243 TRTPLIPDAIYIEGEKNGIP---VELAFTYNNSYNENIHSYVNNINTIEGGSHVAGFRRG 299 Query: 338 LTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR +K YAE + + + I DD ++SV ++EP+F GQTKTKL + + Sbjct: 300 LTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNTEVTGA 359 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V+ A+ + ++L +NP EA ++ VI + R+ + V RK + LPGKLA Sbjct: 360 VDIAVGEALGNFLEENPKEAKLIVNKVILAATARAAARKAREMVQRKNVMGGSGLPGKLA 419 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ H ELF+VEGDSAGG+AKQ RNR QA+LPL+GKILNV A KI N +I Sbjct: 420 DCANKDPHVCELFLVEGDSAGGTAKQGRNRDFQAILPLKGKILNVEKAMEHKIYENDEIK 479 Query: 515 DLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ ALG + E LRY KVIIMTDADVDG+HI +L+LTFF++ M LIE Sbjct: 480 NIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSHITTLILTFFFRYMKQLIEA 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQL 628 ++++ +PPL+++ +G + Y ++ + ++ K GK + I R+KGLGEM A QL Sbjct: 540 GNIYIAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGKEDSVHIQRYKGLGEMNAEQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET ++ RTL R I S + + LMG + R +FI++ A + Sbjct: 600 WETTLNPETRTLKRATIE----SAAEADRIFSMLMGDEVAPRREFIEKNARYAK 649 >gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar oswaldocruzi] Length = 631 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 383/649 (59%), Gaps = 22/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVE DSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVE-DSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 468 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 469 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 529 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 586 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 587 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 631 >gi|238915981|ref|YP_002929498.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] gi|238871341|gb|ACR71051.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] Length = 644 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 261/656 (39%), Positives = 383/656 (58%), Gaps = 18/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A+Q+A NY I++LEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ Sbjct: 1 MADQNAEKNYGGDQIQVLEGLEAVRKRPGMYIGSTSGRGLHHLVYEIVDNAIDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV ++ + +TV+DNGRG+PV+ + K + +E++ T LHAGGKF Y++SGGL Sbjct: 61 THIEVMINKDNSITVIDNGRGVPVDINHK-TGRPAIEVVYTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG SVVNALS+ L V V R I+ Q++ RG L+ GT++TF PD Sbjct: 120 HGVGASVVNALSEWLEVQVKRNGHIYQQRYERGKICYDLKIVGDCDIEDTGTQVTFLPDS 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + F+ L+ + A+L+ +K + +E E +++ F++ GG+K ++ Sbjct: 180 EIFQETTVFEFDILMHRLREMAFLTKGIKITLTDLREGLE-----QQKVFHYEGGIKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q +++ + S+I + K VE A + + S+ N I T EGGTH + Sbjct: 235 QYLNKSKEPLYSQIIYCEGVKDNVQ---VEVAFQHNDGYNEVVDSFVNNIKTPEGGTHLT 291 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R +LT+ YA + + DD+ I+SV I +P+F GQTK KL + Sbjct: 292 GFRNSLTKTFNDYARKNKILKDSDQGLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNT 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 A+ V++ + + ++L QNP A + E ++ + R+ + RKTA+ L Sbjct: 352 VARGAVDSIVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALESTSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRILG 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M DLI + Sbjct: 472 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIRE 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H++L PPL+++ + K YA++++ I+ E + K + R+KGLGEM A QL Sbjct: 532 GHVYLAQPPLYKVEKNKKVWYAYNDDELNAIMTEIGRDQNNK--VQRYKGLGEMDAEQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD +KR LLRV +N+D + + + LMG K + R FI+ A F+ ++ Sbjct: 590 ETTMDPHKRVLLRVNMNED--DDSELDVTFSTLMGDKVEPRRDFIEANAKFVKNLD 643 >gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] Length = 646 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 377/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 QS + +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ Sbjct: 7 TNVQSNASDYNDDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IE++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGL Sbjct: 67 SEIEITIEEDNSITVRDNGRGIPTGINEKV-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS +L V V R + Q+F +G + +E++ + + RGT + F+PDP+ Sbjct: 126 HGVGASVVNALSTDLEVYVHRDGQKYYQRFEQGNVVMDMEERGET-DYRGTIVHFKPDPE 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD L + A+L+ ++ +E ++++++ GG+++Y++ Sbjct: 185 IFTETTVFDFDTLRTRARELAFLNKNLRISIEDKREEH-----QVRKDYHYEGGIRSYVE 239 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 +++ +I + E++ VE ++ + + N I T EGGTHESG Sbjct: 240 HLNKSKEVIHEPPIYLEGEREDIM---VEISMQYNTGFASNLISFANNIHTYEGGTHESG 296 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + + ++ +D+ I+S+ P+F GQTKTKL + + Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSE 356 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ + + + ++++NP K++E V+ +R + + + + LP Sbjct: 357 ARTITDKLFSEALNKFMMENPDVGKKIVEKGVVASRARMAAKRARDVARKTSGLEISNLP 416 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILAN 476 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 477 EEIRTIFTAMGTGFGGDFNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++I G + Y + ++ L K I R+KGLGEM QL E Sbjct: 537 YIYIAQPPLYQIKHGKEVEYVYTDKQLDDYLASIGSD--TKYAIQRYKGLGEMNPEQLWE 594 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V IN + D ++ LMG + + R KFI+E A ++ ++ Sbjct: 595 TTMNPEHRTLLQVNINDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645 >gi|298374500|ref|ZP_06984458.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19] gi|298268868|gb|EFI10523.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19] Length = 651 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 263/658 (39%), Positives = 388/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AGY I Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV D+GRGIPV+ H K KS LE++LT LHAGGKFD TY++SGGLHGV Sbjct: 66 DVVINEDNSITVTDDGRGIPVDIHEK-EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R + Q+FS G PL ++ + +K GT I+F+P+ IF Sbjct: 125 GVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVIDNT-DKTGTTISFKPNGSIFT 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F+ GLK +++ Sbjct: 184 VT-EYKYDILATRLRELAFLNAGITLRLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + + SY N I T EGGTH +G R Sbjct: 242 RSKEKLIPDVIHIVTEKQGIP---VEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYAE ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI ++ R RK RE+ ++ + + LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A KI +++I Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 514 MDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ E LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y E+ +Q+ + ++ + I R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ + + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----NAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|237743164|ref|ZP_04573645.1| DNA gyrase subunit B [Fusobacterium sp. 7_1] gi|256027571|ref|ZP_05441405.1| DNA gyrase subunit B [Fusobacterium sp. D11] gi|289765530|ref|ZP_06524908.1| subunit B [Fusobacterium sp. D11] gi|229433460|gb|EEO43672.1| DNA gyrase subunit B [Fusobacterium sp. 7_1] gi|289717085|gb|EFD81097.1| subunit B [Fusobacterium sp. D11] Length = 635 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 256/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 62 PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + T+ QK+ RG P ++ N+ GT + F+ D +IF Sbjct: 121 NALSEWLEVEVRKNGTVHYQKYHRGKPEEDVKVIGTCDENEHGTTVRFKADGEIFETLV- 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K E + F GG+ +L +++ + Sbjct: 180 YNYFTLSNRLKELAYLNKGLTIILSDLRKDEKKE-----EIYKFDGGILDFLNEIVKDET 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 235 TIIEKPFFVSAEQDNV---GVDVTFTYTTSQNEVIYSFVNDINTHEGGTHVQGFRTALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIISTKIPQPQFEGQTKGKLGNSEVSGIVNT 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 352 VVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ P Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G + +YA+++ + IL + + K K I R+KGLGEM QL ET M+ + Sbjct: 532 PLYKVAAGKQIIYAYNDLELKNILGQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634 >gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1] gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4] Length = 645 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 264/657 (40%), Positives = 384/657 (58%), Gaps = 19/657 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY Sbjct: 2 ATEKIENPNEYGADQIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 IEV+++ + +TV D+GRGIPV + K KS LE++ T LHAGGKF Y++SGG Sbjct: 62 CKNIEVTINPDNSITVEDDGRGIPVGMNHKA-GKSALEVVYTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPD 212 LHGVG SVVNALS +L V V ++ ++ Q + G P P++ K GT++TF PD Sbjct: 121 LHGVGASVVNALSTKLCVEVYKEGQVYFQSYHIGKPDEPVKVIGTCDSEKHGTKVTFHPD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + +D L + + A+L+ ++ + +E + EF++ GG+K + Sbjct: 181 PEIFEETV-YDYDTLKQRLRETAFLTKGLRIVLTDTREESH-----HCHEFHYAGGIKEF 234 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 + ++ + ++ + + G + VE A+ + + S+ N I+T EGGTH Sbjct: 235 VTYLNRSKEALYPDVIYCEGTRDGVY---VEVAMQHNDSYNDATYSFVNNIITPEGGTHL 291 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALT+ YA + + DD+ I+S+ I EP+F GQTK KL + Sbjct: 292 AGFRNALTKTFNTYARANKILKDSEPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGN 351 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 +A+ V++ + + ++L QNP A + E ++ + R+ + RKTA+ Sbjct: 352 SEARGAVDSVVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALEGTS 411 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI Sbjct: 412 LPGKLADCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIY 471 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I ++ A G + LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M +LI+ Sbjct: 472 GNAEIKAMITAFGTGIHEDFDISKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIK 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 Q H++L +PPL++I + YA+D+ IL E + G K I R+KGLGEM A QL Sbjct: 532 QGHVYLATPPLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNK--IQRYKGLGEMDAEQL 589 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD KR L RV I++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 590 WETTMDPEKRILKRVMIDE--ENSSEIDVTFTTLMGDKVEPRREFIEENAKYVQNLD 644 >gi|330997801|ref|ZP_08321636.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841] gi|329569689|gb|EGG51454.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841] Length = 655 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 263/658 (39%), Positives = 381/658 (57%), Gaps = 26/658 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY ASSI++LEGLE VR RP MYIG EK LHHL E +DN++DE +AGY IEV+++ Sbjct: 10 NYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYETVDNSIDEALAGYCTHIEVTIN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K +KS LE+++T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 70 EDNSITVQDNGRGIPVDMHEK-EHKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 128 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R+ I+ Q++ G PL P++ + RGTR F PD IF + Sbjct: 129 NALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGET-ELRGTRQQFWPDSSIFITTT-Y 186 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + A+L+ + + +E E +P E F+ GLK +++ +R Sbjct: 187 KYEILANRMRELAFLNAGITIILTDMREKDENG-VPRSETFHSKDGLKEFVRYIDSSRIH 245 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + +++ TEK+G +E AI + I SY N I T EGGTH +G R ALTR Sbjct: 246 LFNDVIYLNTEKQGVP---IEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTALTRT 302 Query: 342 IKKYAEL-------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +KKYAE K + I +D ++S+ + EP+F GQTKTKL + + Sbjct: 303 LKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVAG 362 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI + R+ RK RE ++ + + +PGKL Sbjct: 363 AVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGMPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELFIVEGDSAGGSAKQ R+R QA+LP+RGKI NV K ++++ Sbjct: 423 ADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEV 482 Query: 514 MDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +++QALG R + E LRY KVIIMTDADVDG+HI +LL+T FY+ M +LI+ Sbjct: 483 NNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQ 542 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + HL++ +PPL+R +G Y + E + + ++++ + + R+KGLGEM QL Sbjct: 543 KGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQL 602 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET M+ R L +V I + LMG R +FI++ A++ ++ Sbjct: 603 WETTMNPETRLLKQVTIED----AAGADYVFSMLMGEDVGPRREFIEQNATYA-NIDA 655 >gi|167748047|ref|ZP_02420174.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662] gi|317472423|ref|ZP_07931748.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] gi|167652527|gb|EDR96656.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662] gi|316900143|gb|EFV22132.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] Length = 640 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 261/652 (40%), Positives = 381/652 (58%), Gaps = 19/652 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Y A I+ILEGLE VR RPGMYIG T K LHHL E++DNA+DE +AGY + I Sbjct: 3 TEKKGEYGADQIQILEGLEAVRKRPGMYIGSTSAKGLHHLVYEIVDNAVDESLAGYCDTI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V+L+ + +TV DNGRGIPV + K S++E++ T LHAGGKF Y++SGGLHGV Sbjct: 63 YVTLNKDNSVTVRDNGRGIPVGMNKK-KGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ L V V I++Q++ +G PL+ + GT ++F PD IF Sbjct: 122 GSSVVNALSNWLEVNVHTDGKIYNQRYEKGKVCYPLKVVGET-ELNGTEVSFLPDDTIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F+ L + + A+L+ ++ D+ P +E F++ GG+K ++ Sbjct: 181 ETI-FEYKVLRQRLRETAFLTKNLRIILRDDR-----QEEPVEEVFHYEGGIKEFVTYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + ++ + EK G + VE A+ + S+ N I+T EGGTH SG + Sbjct: 235 RGKEALYDQVIYCEGEKDGVY---VEVAMQHNDSYNENSLSFVNNIITPEGGTHLSGFKN 291 Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALT YA + + ++ +D+ ++S+ + EP+F GQTK KL + +A+ Sbjct: 292 ALTTTFNDYARKNKLLKENESNLSGEDIREGLTSVISIKLGEPQFEGQTKQKLGNSEARG 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + + ++L QNP A + E + R RK R+ RKTA+ LPGKL Sbjct: 352 AVNSIVNEQLTYFLEQNPAVAKIICEKAVLAQRARDAARKARDLTRRKTALDGFSLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV + +KI N++I Sbjct: 412 ADCSDKNPENCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILMNKEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI++ +++ Sbjct: 472 QAMITAFGTGIHDDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPDLIKEGYVY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ + K YA+ ++ I+ E + K I R+KGLGEM A QL +T M Sbjct: 532 MAQPPLYRVERNKKFWYAYSDQELNNIVNEIGRDNNNK--IQRYKGLGEMDAEQLWDTTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D +KR LLRV I++D S + + LMG + + R +FI+ A ++ ++ Sbjct: 590 DPDKRVLLRVTIDED--SASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLD 639 >gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar tolworthi] Length = 632 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 382/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDETNVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|167759582|ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704] gi|167662809|gb|EDS06939.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704] Length = 644 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 260/656 (39%), Positives = 380/656 (57%), Gaps = 18/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ Sbjct: 1 MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I VS++ + +TVVDNGRGIPV + K +E++ T LHAGGKF Y++SGGL Sbjct: 61 DTILVSINKDNSITVVDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG SVVNALSD L V + + I+ Q++ RG L + +K GT++TF PD Sbjct: 120 HGVGASVVNALSDWLEVEIFSKGKIYKQRYERGKVAQKLAVIGECEPDKTGTKVTFFPDD 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + FD L + + A+L+ +K ++ E P ++ F++ GG+K ++ Sbjct: 180 TIFEET-EFDYDILKQRFREMAFLTKGLKIILRDERPEEE----PIEKVFHYEGGIKQFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332 + +++ + +I + G VE A+ + + T + N I T EGGTH Sbjct: 235 EYLNRSKTPLYEDIIYCEGMANGV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIV 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALT+ YA + R ++ +D+ I+SV I +P+F GQTK KL + Sbjct: 292 GFRNALTKTFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 +A+ V++ + + YL QNP A +E V+ + R+ + RK+A+ + L Sbjct: 352 EARGAVDSIVSNQLVVYLEQNPSIAKMTIEKSVMAQRAREAARKARDLTRRKSALDGMSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI Sbjct: 412 PGKLADCSDKDPKNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYG 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ Sbjct: 472 NAEIKAMITAFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKE 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ + K YA+ +E IL E + G K I R+KGLGEM A QL Sbjct: 532 GYVYMAQPPLYKLEKNKKVWYAYSDEELDGILTEVGRDGNNK--IQRYKGLGEMDAEQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD R LLRV +++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 590 DTTMDPEHRVLLRVTMDE--ETTSELDLTFTTLMGDKVEPRREFIEENAKYVKNLD 643 >gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 648 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 258/662 (38%), Positives = 381/662 (57%), Gaps = 21/662 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 ++ + N +Y A I++LEGLE VR RPGMYIG T EK LHHL E++DN++ Sbjct: 4 NQMKEIEEMENIKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSI 63 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A I+++++ + + V DNGRG+P K S +E I T LHAGGKF Sbjct: 64 DEALAGFATDIDIAIEKDNIIRVEDNGRGMPTGIVEK-SGISGVETIFTILHAGGKFGGG 122 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG SVVNALS+ L VTV + I+ +F G K +K G+ Sbjct: 123 AYKVSGGLHGVGASVVNALSEWLEVTVYQNGNIYFMRFENGGKAVESLKIIGKTDKHGSM 182 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+ DP IF + +D L + A+L+ +K + ++E K + + + Sbjct: 183 VRFKADPTIFTETQVYDFETLNTRIRQLAFLNKSIKLILTDEREEERKEIV-----YKYD 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ Y++ +N+S + E+ + + G E A+ + + P I S+CN I T Sbjct: 238 GGIRQYVEYLNQNKSPLHEEVVYVEGIEDGIL---AEIALQYNDGYVPNIYSFCNNINTA 294 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 EGGTHE G R+ALTR + YA K+ ++ DD+ I+SV +P++ GQTK Sbjct: 295 EGGTHEDGFRLALTRIVNAYARENGMIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTK 354 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + + ++ V + L + + + ++NP A +++ I S+ R+ +K RE RK+A Sbjct: 355 TKLGNSEVRKIVSSILGEQLEKFFLENPDTAKIIIDKCILASKARMAAKKARELTRRKSA 414 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADCS A E++IVEGDSAGGSAKQ RN QA+LPLRGKILNV A Sbjct: 415 LEISSLPGKLADCSSRDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKAR 474 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +I N +I ++ A GC + LRY K+IIMTDADVDGAHI +L+LTFFY+ + Sbjct: 475 LHRIFENNEIRSMITAFGCGIGEEMDISKLRYHKIIIMTDADVDGAHICTLMLTFFYRFL 534 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +IE ++++ PPLF+I +G + Y +DE + +++ E ++ + I R+KGLGEM Sbjct: 535 RPIIEGGYVYIAMPPLFKIQKGQRIEYVYDESSRDRVIAEMGEN----VSIQRYKGLGEM 590 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL ET MD RTL +V IN + + LMG + R +FIQE A + + Sbjct: 591 NPEQLWETTMDPAFRTLKKVNINDAM----EADKVFEMLMGEEVGPRREFIQENAVYAE- 645 Query: 684 VG 685 + Sbjct: 646 LD 647 >gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989] gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989] Length = 651 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 263/654 (40%), Positives = 393/654 (60%), Gaps = 21/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ Y A I++LEGLEPVR RPGMYIG T + LHHL E++DN++DE +AG+ N Sbjct: 13 SEKIDKKYGAEEIQVLEGLEPVRKRPGMYIGSTGKPGLHHLVYEIVDNSIDEALAGHCNE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLH 155 I++ ++ +G + V DNGRG+PV+ HPK +E+I + LHAGGKFD N Y++SGGLH Sbjct: 73 IKICINEDGSIRVEDNGRGMPVDIHPKQ-KIPAVEVIHSILHAGGKFDENGGYKVSGGLH 131 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS + V + R ++ Q++SRG ++ LE G+ F PD +I Sbjct: 132 GVGASVVNALSSRMEVKIKRNGNLYKQEYSRGKTMTKLEIIGTSTE-TGSITEFMPDDQI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D FD L + A+L+ +K ++ EK + + GG+K +++ Sbjct: 191 FDDI-EFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNT-----YCYEGGIKEFIKY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334 + +N+ + +I + + VE AI + + E SY N I T EGG H SG Sbjct: 245 QNKNKEKLHEDIIFFDKKLDNSQ---VEVAIQYTDRYSETLLSYANNINTTEGGYHLSGF 301 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I YA+ + + S++ +D+ I+SV + P+F GQTKTKL + Sbjct: 302 KSALTRVINDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEGQTKTKLGNSFI 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE A+ + +L+++P +A ++E I+ + R +K R+ RKTA+ L LPG Sbjct: 362 RGVVETAVNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKTALDSLALPG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL+DCS+ +E+F+VEGDSAGGSA+Q R+R+ QAVLPLRGKILNV A +KI +++ Sbjct: 422 KLSDCSEKDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKARLDKILSSE 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +++ A GC + + LRY K+IIMTDADVDGAHI +LLLTFFY+ M L+E H Sbjct: 482 EIKNMITAFGCGIGDDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMMPLVEAGH 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+++ +G K Y + E ++K+++ + G GK +I R+KGLGEM +QL ET Sbjct: 542 VYAAQPPLYKVKKGKKEYYTYSENEQKKLMKNLAEQG-GKSDIQRYKGLGEMDYNQLWET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +KRTL+++ + D LMG K R KFI+E A ++ ++ Sbjct: 601 TMDYDKRTLIQITVED----ASAADDIFTTLMGDKVPPRKKFIEENARYVKNLD 650 >gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 639 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 271/656 (41%), Positives = 399/656 (60%), Gaps = 24/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ + Y A I++L GLEPVR RPGMYIG T K LHHL EV+DN++DE +AG + Sbjct: 2 KENKNRQYGAEDIQVLTGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNSIDEALAGICDH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + ++V DNG GIP E HP+ KST+E +LT LHAGGKF+N Y++SGGLHG Sbjct: 62 ILVEIYEDNSVSVSDNGSGIPTEIHPQ-TGKSTVETVLTILHAGGKFNNGAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKI 215 VG+SVVNALS EL V V R I+ QKFSRGI + L + EK + + GT+I FRPDP+I Sbjct: 121 VGVSVVNALSTELIVNVKRNGNIYEQKFSRGIAKTQLIEVEKLKKEETGTKIFFRPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F+ L K + A+L+ +K + + I + E +++ GG+K++++ Sbjct: 181 FDT-VEFEFEILSKRFREMAFLNKGIKIQFIDHR-------IGKDETYHYEGGIKSFVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ I EI ++ T VE A+ + + I ++ N I T+EGG+H SG Sbjct: 233 INRKKTAIHKEIIYIDEIRENT---AVEIALQYTDSYTENILTFANNINTEEGGSHLSGF 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I Y ++ ++ +D+ G++SV + P+F GQTK KL + + Sbjct: 290 RSALTRCINDYGRKYNIIKEKEENLSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSET 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V++++ + +L +NP A +LE + R RK R+ +K + + LPG Sbjct: 350 RGIVDSSVSENLSSFLEENPKVAKTILEKSLSARRAREAARKARDLTRKKNILESMTLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + TE+F+VEGDSAGGSAK AR+ QA+LPLRGKI+NV A +KI N+ Sbjct: 410 KLADCQNSDNETTEIFLVEGDSAGGSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSD 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A G S++ ++LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE+ H Sbjct: 470 EIKAMITAFGTGIGSEFSIDNLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGH 529 Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPLF I +GTK++ Y +D+ Q+ L E + K +I R+KGLGEM L E Sbjct: 530 VYVAQPPLFGILKGTKALRYCYDDRELQRALNELGRD--KKFDIKRYKGLGEMNPEDLWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T M+ + R LL+VEI + + ++ + LMG++ + R FIQE A F++++ Sbjct: 588 TTMNPDHRILLKVEIKDAI----EADETFSMLMGSEVEPRRDFIQENALFVENIDA 639 >gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101] gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101] Length = 638 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + NYDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TVVD+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 63 KVYIHKDNSITVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R ++ Q + RG L+ LEK + GT++ F+PD +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + + A+L+ + ++E K E +++ GG+K+++ Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + K G VE ++ + + N I ++ N I T EGGTH +G + Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291 Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + + ++ DD+ ++SV I EP+F GQTKTKL + + + Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + +L +NP ++E + S R R+ RE+ RK+ + + LPGKLA Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI + I Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A+G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++ Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I++G + YA+ + +I+EEF + + R+KGLGEM A QL ET MD Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLR +I + + LMG K + R +FIQ+ A + ++ Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637 >gi|110799437|ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124] gi|168207731|ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987] gi|168215272|ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969] gi|170764021|ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626] gi|182420561|ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239] gi|182627057|ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721] gi|110674084|gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124] gi|170660917|gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987] gi|170710064|gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626] gi|170713332|gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969] gi|177907583|gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721] gi|182379692|gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239] Length = 638 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + NYDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TVVD+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 63 KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R ++ Q + RG L+ LEK + GT++ F+PD +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + + A+L+ + ++E K E +++ GG+K+++ Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + K G VE ++ + + N I ++ N I T EGGTH +G + Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291 Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + + ++ DD+ ++SV I EP+F GQTKTKL + + + Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + +L +NP ++E + S R R+ RE+ RK+ + + LPGKLA Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI + I Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A+G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++ Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I++G + YA+ + +I+EEF + + R+KGLGEM A QL ET MD Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLR +I + + LMG K + R +FIQ+ A + ++ Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637 >gi|318042881|ref|ZP_07974837.1| DNA gyrase subunit B [Synechococcus sp. CB0101] Length = 653 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 260/659 (39%), Positives = 372/659 (56%), Gaps = 16/659 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L+ +G V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 DQILVVLNEDGSCAVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG+SVVNALS+ + VTV RQ Q+F RG P+ L K ++ GT + F+PD Sbjct: 121 HGVGVSVVNALSEWVEVTVHRQGQEHLQRFERGAPIGSLASKPAADPSRTGTSVCFKPDI 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG-IPEKEEFYFPGGLKTY 272 +IF FD L + AYL+G V+ + ++ A +E +++ GG+K Y Sbjct: 181 EIFTGGIEFDYHTLSARLRELAYLNGGVRIVFRDERPAARNAEGAAHEEIYHYEGGIKEY 240 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + +I +EK G + + I + N I T +GGTH Sbjct: 241 VAYMNAEKDALHPDIIYVNSEKDGV-QVEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 300 GLKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 359 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V++ + + YL NP +LE I+ R+ RE V RK+ + L Sbjct: 360 EVRGIVDSLVGEALSEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + +E LRY +++IMTDADVDGAHI +LLLTFFY+ L+E Sbjct: 480 NTEIQALITALGLGIKGEEFDEKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVE 539 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E ++++E F + K I RFKGLGEM+ QL Sbjct: 540 GGYIYIACPPLYKVERGKNHSYCYNEGDLKRVVEGFGE--KANYTIQRFKGLGEMMPQQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 ET MD RT+ RVEI + LMG K R +FI+ ++ +D + Sbjct: 598 WETTMDPTTRTMKRVEIED----AAEADRIFTILMGDKVAPRREFIETHSAELDLAQLD 652 >gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister micraerophilus DSM 19965] gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister micraerophilus DSM 19965] Length = 646 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 260/663 (39%), Positives = 377/663 (56%), Gaps = 22/663 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + A A+ +Y A IR+LEGLE VR+RPGMYIG T + LHHL EV+DN++ Sbjct: 1 MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ IEVSL+ +G TVVDNGRGIP H + +E++LT LHAGGKF Sbjct: 61 DEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMHE--TGRPAMEVVLTVLHAGGKFGGE 118 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y ISGGLHGVGISVVNALS+ V V R F RG + + GT Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVSESMRTYGETSE-TGTT 177 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF+PDP IF + FD L + A+L+ ++ S +++ + EEF++ Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRV-----EEFHYA 232 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+ +++ E + + ++ + + E+ V+ A+ + + ++ N I T Sbjct: 233 GGIVEFIKFLNEGKDAVHDDVISFEGERDKII---VDIAMQYQTGYSESMYTFVNDINTT 289 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQT 383 EGG H SG R ALTR I YA + ++ DD+ ++SV + P+F GQT Sbjct: 290 EGGMHLSGFRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQT 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL +L+ + V+N + + YL ++P EA ++E I S R ++ RE RK Sbjct: 350 KTKLGNLEVKGVVDNIVSEGLHIYLEEHPSEARLIVEKGITASRAREAAKRARELTRRKN 409 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKL+DCS+ TE++IVEGDSAGGSAK R+R QA+LPLRGKILNV A Sbjct: 410 ALEVSSLPGKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKA 469 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ N+ I ++ A G + LRY K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 470 RVDRVLNSDTIRMMITAFGTGVSEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRY 529 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M LI + H+++ PPL+++ +G + Y +D++ + K+L+E + G I R+KGLGE Sbjct: 530 MKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDG---CTIQRYKGLGE 586 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL T M+ +R ++RVE+ + + LMG K + R KFI+E A + Sbjct: 587 MDPEQLWNTTMNPEQRVMMRVELTDAV----EADRLFTILMGDKVEPRRKFIEENAMNVT 642 Query: 683 DVG 685 ++ Sbjct: 643 NLD 645 >gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21] gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21] Length = 648 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 265/665 (39%), Positives = 381/665 (57%), Gaps = 24/665 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + + + + Y A I++LEGLE VR RP MYIG + LHHL EVIDN+ Sbjct: 2 TEKDNEKTIEEEIAVHGEYGAEQIQVLEGLEAVRKRPSMYIGSISARGLHHLVYEVIDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGY + I V + + +TVVDNGRGIPVE H K +E+++T LHAGGKF + Sbjct: 62 IDEALAGYCDHILVEIGEDNSITVVDNGRGIPVEMHK--IGKPAIEVVMTILHAGGKFGD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRG 204 Y++SGGLHGVG+S VNALS + V V + I+ +FS+G + PL K + G Sbjct: 120 GGYKVSGGLHGVGVSCVNALSRRMEVEVKKDGKIYGIEFSKGKTVRPLYVKGECDAKDTG 179 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F PD IF + + L + A+L+ VK D+ A+ E F+ Sbjct: 180 TSVHFWPDDTIFTETV-YSYETLKHRIRELAFLNKGVKIELKDDRSGAD-------EIFH 231 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 + GG+ ++++ + + I + + E++ T VE A+ + + I ++ N I Sbjct: 232 YEGGIISFVEYINKGKEAIFNTPIYVEGERQDTI---VEVAMQYTDAYTENIYTFVNNIN 288 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAG 381 T+EGGTH +GL+ ALTR I YA + ++ DD+ +LS+ +REP+F G Sbjct: 289 TEEGGTHLAGLKQALTRSINDYARKNGLLKDSEENLSGDDVREGLTCVLSLKVREPQFEG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440 QTKTKL + + + V+N + D + Y +N A K++E I S R RK R+ R Sbjct: 349 QTKTKLGNSEVRGIVDNMVSDALNEYFEENAPTAKKIVEKAILSSRARAAARKARDLTRR 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K+A+ LPGKLADCS A TE++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILNV Sbjct: 409 KSALEVSSLPGKLADCSSKNAEETEIYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVE 468 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ NN +I ++ A GC ++ +RY K+IIMTDADVDGAHI +LLLTFFY Sbjct: 469 KARLDKMLNNNEIRSMITAFGCGIGDEFDLSKIRYGKIIIMTDADVDGAHIRTLLLTFFY 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + M LI ++F+ PPL+ I G YA+ ++ QK L+E + + R+KGL Sbjct: 529 RYMQPLIRNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPY--VQRYKGL 586 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET MD +KRT+L+V + + LMG K + R +FI+E A Sbjct: 587 GEMNPEQLWETTMDPSKRTVLQVHLED----AASADSVFSVLMGDKVEPRRQFIEENAGK 642 Query: 681 IDDVG 685 + ++ Sbjct: 643 VTNLD 647 >gi|18308988|ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13] gi|18143663|dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13] Length = 638 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 386/651 (59%), Gaps = 19/651 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + NYDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TVVD+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 63 KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R ++ Q + RG L+ LE+ + GT++ F+PD +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAEG-SGTKVHFKPDHEIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + + A+L+ + ++E K E +++ GG+K+++ Sbjct: 181 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + K G VE ++ + + N I ++ N I T EGGTH +G + Sbjct: 235 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 291 Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + + ++ DD+ ++SV I +P+F GQTKTKL + + + Sbjct: 292 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISDPQFEGQTKTKLGNSEVRS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + +L +NP ++E + S R R+ RE+ RK+ + + LPGKLA Sbjct: 352 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI + I Sbjct: 412 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A+G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++ Sbjct: 472 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I++G + YA+ + +I+EEF + + R+KGLGEM A QL ET MD Sbjct: 532 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLR +I + + LMG K + R +FIQ+ A + ++ Sbjct: 591 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 637 >gi|89890612|ref|ZP_01202122.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7] gi|89517527|gb|EAS20184.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7] Length = 646 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 258/661 (39%), Positives = 387/661 (58%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y A I+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AG+ Sbjct: 1 MSEENNKSGYGADQIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V+++ + +TV D+GRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 NNITVAINEDNSITVTDDGRGIPVGIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALSD L TV R I+ Q++ RG + P++ +KRGT +TF PD Sbjct: 120 HGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTFLPDRS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + A+L+ +K + ++ E + F GLK +++ Sbjct: 179 IFTQTTEFSYETLANRLRELAFLNKGIKVILTDKRQKDEDG-NFVTDVFQSEEGLKEFIR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + R I +++ + + EK G VE A+ + + + SY N I T EGGTH +G Sbjct: 238 FLDDTRQPIIADVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV ++EP+F GQTKTKL + + Sbjct: 295 FRRGLTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + YL +NP +A +++ VI ++ R RK RE+ RKT + LP Sbjct: 355 VTSAVSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R QA++PLRGKILNV A + K+ N Sbjct: 415 GKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ E LRY KV+IM DAD+DG+HIA+L+LTFF++ M + Sbjct: 475 EEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +IE+ ++++ +PPL+ + +G K YA ++ + I + F G + I R+KGLGEM A Sbjct: 535 MIEKGYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFG----GGVNIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ SL + + LMG + R +FI++ A + ++ Sbjct: 591 DQLWDTTMNPEFRTLRQVTID----SLPEADRIFSMLMGDEVPPRREFIEKNAIYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1] gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1] Length = 640 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 387/653 (59%), Gaps = 21/653 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 A +Y S I +LEGLE VR RPGMYIG T + LHH E++DN++DE +AGY Sbjct: 5 QTPQADSSYGESGIVVLEGLEAVRRRPGMYIGDTTVRGLHHCVYEIVDNSVDESLAGYCG 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPVE H + KST+E +LT LHAGGKFDN +Y++SGGLH Sbjct: 65 HITVTIGTDESVSVTDDGRGIPVEIHHQ-TGKSTVETVLTVLHAGGKFDNRSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ L VTV R + Q++ RGIP++PL K RGTR+ F D +I Sbjct: 124 GVGVSVVNALSEWLEVTVWRDGYEYFQRYERGIPVAPLAKTLPSTR-RGTRVRFLADSQI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + A L+ + A+L + +E + F GG+ +++ Sbjct: 183 FDEV-QYSAETLVSRFREMAFLIPGLTITVEDQRE-------GKTWTFCEEGGIAEFVRY 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R ++ E E+ G +VE A + ++ + S+ N I T EGGTH +GL Sbjct: 235 LNRDRVVLFPEPLVVSGERDGV---SVEMAFQYTDDYNERLFSFANLIHTVEGGTHVAGL 291 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + + A ++ ++ +DL ++SV + P+F GQTKTKL + Sbjct: 292 RSALTRAVNEGARRAGALREKDENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTV 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + +V++ + D + ++ +++ ++ + R +K RE+ RK+A+ L LPGK Sbjct: 352 KGSVDSVIYDGLLGHFDEDSSALKPIVDKAVKARQAREAAKKARELVRKSAMSGLSLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A E++IVEGDSAGGSAKQ R+RS QA+LPLRGKILNV A +KI ++++ Sbjct: 412 LADCSSKKAEECEVYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++QALGC ++ LRY K+IIMTDADVDGAHI++LLLTFF++ M +L+E+ H+ Sbjct: 472 IRVIIQALGCGIGDEFDLSKLRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL+R+ G K Y + + + +++ ++ GK + R+KGLGEM QL ET Sbjct: 532 YLAVPPLYRVQSGKKVDYLYSDRQLRTLMDSYEVEGKS-PAVQRYKGLGEMNPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R L R++++ + + + LMG K + R FIQ A + ++ Sbjct: 591 MDPATRLLKRIQVDDAI----AADEYFSILMGDKVEPRRDFIQTHAHEVRNLD 639 >gi|33241245|ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238775|gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 658 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 264/656 (40%), Positives = 374/656 (57%), Gaps = 16/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ Sbjct: 5 STVQKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNAVDEALAGHC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V L +G ++ DNGRGIP + HPK KS LE +LT LHAGGKF + Y++SGGL Sbjct: 65 NEIVVVLCSDGSASISDNGRGIPTDVHPK-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ I +Q+F RG P+ ++ + GT++ F+P Sbjct: 124 HGVGVSVVNALSEWVEVTVRRQGHIHNQRFERGAPIGNLRSTKQPVSEKKLTGTKVNFKP 183 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLK 270 D IF FD + L + AYL+G VK + ++ +++K +E +++ GG+K Sbjct: 184 DTDIFTTGIVFDYSILSSRLRELAYLNGGVKIVFRDERQSVSDKEEKAYEEVYFYEGGIK 243 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y+ + + EI +EK+G + + I + N I T +GGTH Sbjct: 244 EYVAYMNSEKDALHPEIIYVNSEKEGV-QVEAALQWCIDAYSDSILGFANNIRTVDGGTH 302 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A ++ ++ +++ +LSV + EPEF GQTKTKL Sbjct: 303 IEGLKTVLTRTLNSFARKRGKRKDGDSNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLG 362 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 363 NTEVRGIVDSLVGESLAQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLEST 422 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 423 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 482 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ LG + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L Sbjct: 483 YKNTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 542 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ +G Y ++E QK + F + K I RFKGLGEM+ Sbjct: 543 VEGGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGE--KANYTIQRFKGLGEMMPK 600 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD + R + RVEI L + LMG K R +FI+ + +D Sbjct: 601 QLWETTMDPSTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVELD 652 >gi|254465080|ref|ZP_05078491.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I] gi|206685988|gb|EDZ46470.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium Y4I] Length = 652 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 349/652 (53%), Positives = 452/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + A+D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPAADTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F Q+FSRG+PL P+EK NKRGT +TF D +IF Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGPVEKIGAAPNKRGTFVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F RL + +SKAYL V+ W + + E P + F+FPGGLK YL Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDGE---TPTEATFHFPGGLKDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A +I DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGELVNNKKAGNITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L+++I R+EERLRR++++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S K+ +N +I Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLGSNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG S++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 NDLCEALGVGLGSKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + K LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|72383051|ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A] gi|72002901|gb|AAZ58703.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A] Length = 655 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 265/656 (40%), Positives = 377/656 (57%), Gaps = 16/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I++LEGLEPVR RPGMYIG T K LHHL EV+DNA+DE +AG+ Sbjct: 2 SKDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I + L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++SGGL Sbjct: 62 DQITILLCEDGSASVSDNGRGIPTDLHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRITFRP 211 HGVGISVVNALS+ + VTV RQ + Q+F RG + L+ + + +N GT + F+P Sbjct: 121 HGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLK 270 D +IF D F+ L + AYL+G V+ + +++ + P +E +++ GG+K Sbjct: 181 DDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPYEEVYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y++ + + + EI +EK G + + I + N I T +GGTH Sbjct: 241 EYVEYMTKAKDSLHPEIIYVNSEKDGV-QVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A+ ++ ++ +++ +LSV + +PEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + YL NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDSLVGTALSQYLEFNPGVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + E LRY +V+IMTDADVDGAHI +LLLTFFY+ DL Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++T+G Y ++E QK L F + K I RFKGLGEM+ Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGE--KANYTIQRFKGLGEMMPK 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD R + RVEI L + LMG K R +FI+ + +D Sbjct: 598 QLWETTMDPTTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVDLD 649 >gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192] gi|306533644|gb|ADN03178.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192] Length = 635 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 384/648 (59%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A I++L+GLEPVR RPGMYIG T E+ LHHL EV+DN++DE +AG + IEV ++ Sbjct: 2 SYTAEQIQVLKGLEPVRKRPGMYIGSTGEEGLHHLVYEVVDNSIDEALAGVCSRIEVVIE 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +TV D+GRGIPV+ HP+ S LE+++T LHAGGKFD TY++SGGLHGVG+SVV Sbjct: 62 PGNVVTVTDDGRGIPVDLHPE-EKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ V V R I Q++ RG+PL P+E + + T F+PD +IF F Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETT-EF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + + A+L+ ++ + K + F + GGL+ ++ +NR+ Sbjct: 179 SFDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHV-----FKYEGGLREFVAYLNKNRTT 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E + + VE AI + + S+ N I T EGGTH G R ALTR Sbjct: 234 LQKEPIYFEGARDHV---EVECAIEYNDSYSETFFSFVNNINTKEGGTHVVGFRSALTRC 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K ++ DD+ +LS+ + EP+F GQTKTKL + D + VE+ Sbjct: 291 LNDLFKQSKFAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESF 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + + ++P + +LE V++ + R+ RK RE+ R+ + + + LPGKLADC + Sbjct: 351 VYEQLQAHFARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIE 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV EK+ N ++ ++ Sbjct: 411 KDPARCEIFIVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG +++ LRY KVIIM DADVDG+HI +LLLTFFY+ M +L+E+ H+++ PP Sbjct: 471 SLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+++ YA+ +E + +ILE F KK+ K +I + R+KGLGEM QL ET M+ Sbjct: 531 LYKVWVKNDVEYAYSDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWETTMNPAT 590 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++++ + + + ++ LMG + R KFI+E A F+ ++ Sbjct: 591 RNIIQIRVEDAV----EAEEVFTTLMGDQVAPRRKFIEENALFVTNLD 634 >gi|153854251|ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814] gi|149753026|gb|EDM62957.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814] Length = 643 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 374/656 (57%), Gaps = 19/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ Sbjct: 1 MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNAVDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGL Sbjct: 61 DTIYVTINKDNSVTVIDNGRGIPVGINHKA-GLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213 HGVG SVVNALS+ L V + + ++ Q++ RG + L K GT++TF PD Sbjct: 120 HGVGASVVNALSNWLEVEIYHEGKVYQQRYERGKVMEKLTVIGDCEEEKTGTKVTFLPDD 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF FD L + + A+L+ +K D+E P++ F++ GG+K ++ Sbjct: 180 TIFETTI-FDFNVLKQRFREMAFLTKGLKIVLKDDREE-----EPKERTFHYEGGIKEFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332 + + + +I + +VE A+ + + T + N I T EGGTH Sbjct: 234 TYLNRSATPLYEQIIYCEGMVNNV---SVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVV 290 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R A+T+ YA + R ++ +D+ I+SV I +P+F GQTK KL + Sbjct: 291 GFRNAITKTFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 +A+ V+N + + +L QNP ++E V+ + R+ + RK+A+ + L Sbjct: 351 EARGAVDNVVSKQLEIFLEQNPAVGKIIVEKSVMSQRAREAARKARDLTRRKSALDNMAL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI Sbjct: 411 PGKLADCSDKNPENCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYG 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q Sbjct: 471 NAEIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQ 530 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++L PPL+++ + K YA+ +E I+ E + G K I R+KGLGEM A QL Sbjct: 531 GYVYLAQPPLYKLEKNKKVWYAYSDEELSNIINEVGRDGNNK--IQRYKGLGEMDAEQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R LLRV ++ + + + LMG K + R +FI E A ++ ++ Sbjct: 589 ETTMDPEHRILLRVTMDD--ETTSELDLTFTTLMGDKVEPRREFIVENAKYVKNLD 642 >gi|169343479|ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495] gi|169298431|gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495] Length = 637 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 261/651 (40%), Positives = 386/651 (59%), Gaps = 19/651 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + NYDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 2 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +TVVD+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 62 KVYIHKDNSVTVVDDGRGMPVGIHPKM-GKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R ++ Q + RG L+ LEK + GT++ F+PD +IF Sbjct: 121 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAEG-SGTKVHFKPDHEIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + + A+L+ + ++E K E +++ GG+K+++ Sbjct: 180 ET-EYDFEILSQRLRELAFLNKGINITLIDEREDEVKE-----EVYHYEGGIKSFVSYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 N+ ++ E + K G VE ++ + + N I ++ N I T EGGTH +G + Sbjct: 234 RNKEVLHDEPIYVEGLKDGI---AVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKT 290 Query: 337 ALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + + ++ DD+ ++SV I EP+F GQTKTKL + + + Sbjct: 291 ALTRVMNDYGRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + +L +NP ++E + S R R+ RE+ RK+ + + LPGKLA Sbjct: 351 AVDSISGEGISTFLEENPEVGKIIIEKALLASRAREAARRARELTRKSVLERSSLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI + I Sbjct: 411 DCSSKDPKECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIR 470 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A+G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M DL+EQ H+++ Sbjct: 471 SMVTAIGAGIGPEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I++G + YA+ + +I+EEF + + R+KGLGEM A QL ET MD Sbjct: 531 AQPPLYKISKGKQERYAYSDAAADEIIEEFGGKD-SSVNVQRYKGLGEMNAGQLWETTMD 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLR +I + + LMG K + R +FIQ+ A + ++ Sbjct: 590 PESRILLRADIEDAMV----ADEIFTILMGDKVEPRREFIQKNAKNVSNLD 636 >gi|149369783|ref|ZP_01889634.1| DNA gyrase subunit B [unidentified eubacterium SCB49] gi|149356274|gb|EDM44830.1| DNA gyrase subunit B [unidentified eubacterium SCB49] Length = 655 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 257/662 (38%), Positives = 391/662 (59%), Gaps = 24/662 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + ++ NY A I+ LEG+E VRMRP MYIG + LHHL EVIDN++DE +AG+ Sbjct: 9 TMSEENKKGNYGADQIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVIDNSIDEALAGH 68 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + ++V ++ + +TV DNGRGIPV+ H K S L++++T + AGGKFD +Y++SGG Sbjct: 69 CDTVDVWINEDNSITVRDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGG 127 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS L TV R +I+ Q++ RG + P+++ + RGT +TF+PD Sbjct: 128 LHGVGVSCVNALSVHLKATVFRNGSIYEQEYERGKAMYPVKQVGSTED-RGTEVTFKPDE 186 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF ++ L + A+L+ + +E E+ G + E F+ GLK ++ Sbjct: 187 EIFKQTREYNYDTLASRLRELAFLNKGITITLEDKRE-VEEDGSFKGETFHSTEGLKEFV 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHES 332 + NR ++ +++ + + EK VE A+ + E Y N I T EGGTH S Sbjct: 246 RFLDGNREMLIADVISMEGEKNDIP---VEVAMVYNTSYNENLHSYVNNINTHEGGTHLS 302 Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R LT +KKYA+ + K I DD I+SV ++EP+F GQTKTKL + Sbjct: 303 GFRRGLTHTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNR 362 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449 + V A+ + ++YL +NP +A +++ VI + R RK RE+ RKT + L Sbjct: 363 EVTSAVSQAVSEMLENYLEENPNDAKTIVQKVILAATARHAARKAREMVQRKTVMSGGGL 422 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ Sbjct: 423 PGKLSDCSEQDPERCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFE 482 Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ ALG ++ + LRY KV+IM DADVDG+HI++L+LTFF++ M Sbjct: 483 NEEIRNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMR 542 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L+E ++++ +PPL+ + +G K YA + + + E+F G I R+KGLGEM Sbjct: 543 ELVESGYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFG----GSASIQRYKGLGEMN 598 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ASQL +T M+ + RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 599 ASQLWDTTMNPDFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAVYA-NI 653 Query: 685 GT 686 Sbjct: 654 DA 655 >gi|222148646|ref|YP_002549603.1| DNA topoisomerase IV subunit B [Agrobacterium vitis S4] gi|221735632|gb|ACM36595.1| DNA gyrase subunit B [Agrobacterium vitis S4] Length = 702 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 442/705 (62%), Positives = 533/705 (75%), Gaps = 27/705 (3%) Query: 3 DDSIDLFSTLPPQSQGSSE------KLKKSGEIPDSPAFANQSAS--------------- 41 DD+ DLF+ LP +++ + +G P + A A Sbjct: 2 DDNNDLFAALPSTPAEAAKTQKGAADVTAAGTAPVTAAQPETPAKAVAFGSATPASTGNP 61 Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+AN I+V L Sbjct: 62 DDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFIDVHL 121 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D GFLTV DNGRGIPVE HP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SV Sbjct: 122 DAEGFLTVSDNGRGIPVELHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSV 181 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q+FSRG+PL LE+ V N+RGTR+ F PDP+IFGD A Sbjct: 182 VNALSDLLEVEVARNRKLYRQRFSRGVPLGGLEELGDVHNRRGTRVRFHPDPQIFGDHAK 241 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD R+ +M +SKAYL G V+ WSCD + IP+K F+FPGGLK YL L Sbjct: 242 FDPGRIFRMARSKAYLFGGVEIRWSCDPAILTTGGDIPDKAVFHFPGGLKDYLAATLGKE 301 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ EIF GKTEK G H G +EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+ Sbjct: 302 FTVTREIFAGKTEKTGGH-GAMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTK 360 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 G+K YAELTQNKRA I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENAL Sbjct: 361 GLKNYAELTQNKRAQQISTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRLVENAL 420 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDHYL NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADC+QN Sbjct: 421 RDPFDHYLADNPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCAQNT 480 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A G ELFIVEGDSAGGSAKQARNRSNQA+LPLRGKILNV SA EK+ NQQI DL+QAL Sbjct: 481 AEGAELFIVEGDSAGGSAKQARNRSNQAILPLRGKILNVGSASREKLMANQQIADLIQAL 540 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR++YR+EDLRYE+++IMTDADVDGAHIASLL+TFFYQEM +LI HL+L PPL+ Sbjct: 541 GCGTRTKYRDEDLRYERIVIMTDADVDGAHIASLLITFFYQEMPELIRGNHLYLAVPPLY 600 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 I QG K+VYA D+ H+ +++E K K+EI RFKGLGEM+ +QLKET MD KR L Sbjct: 601 VIRQGAKTVYARDDAHRAELMETTFK--GKKVEIGRFKGLGEMMPAQLKETTMDPAKRML 658 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+VEI+ + T+D+++ LMGTK + RF+FIQERA+F +++ Sbjct: 659 LKVEIDDV--DFEGTRDAVDALMGTKPEARFRFIQERAAFAENLD 701 >gi|283768639|ref|ZP_06341551.1| DNA gyrase, B subunit [Bulleidia extructa W1219] gi|283105031|gb|EFC06403.1| DNA gyrase, B subunit [Bulleidia extructa W1219] Length = 659 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 382/647 (59%), Gaps = 20/647 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+ I++LEGLE VR RPGMYIG T LHHL E++DN +DE +AGYA+ +E+++D Sbjct: 27 YEDEDIQVLEGLEAVRKRPGMYIGSTSSVGLHHLVWEIVDNGIDEAMAGYASQVEITVDE 86 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + ++V D+GRG+P + K ST+E I T LHAGGKF Y++SGGLHGVG S VN Sbjct: 87 DNIVSVEDDGRGMPTGMNEK-TGISTIETIFTVLHAGGKFGGGAYKVSGGLHGVGASAVN 145 Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 ALS+ L VTV + +++ +F G P+ PL+ +K G+ + F+ DP IF + Sbjct: 146 ALSEFLEVTVYHEGSVYFVRFENGGHPVEPLKVIGTCDVDKHGSLVRFKADPTIFTETTV 205 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ ++ + + E +++F GGLK Y++ EN+ Sbjct: 206 YDFNILRNRIRQLAFLNKGIRIKFHDLR---EVNFEKRDHDYFFEGGLKEYVKFINENKD 262 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ + + VE A + P I ++CN I T +GGTHE G R+ALTR Sbjct: 263 KVHEDVIYSEGYEDNIQ---VEVACQYNTSYNPSIYTFCNNITTVDGGTHEEGFRMALTR 319 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + KYA ++ ++ +D I+SV +P++ QTK+KL + + ++ V + Sbjct: 320 IVNKYARENNFLKEKDENVTQEDCKEGLTAIISVKHPDPQYISQTKSKLTNSEVRKIVSD 379 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 F+ +L++NP +A ++E ++ S+ RL ++ +E+ RK++I+ LPGKL+DCS Sbjct: 380 IFGTQFERFLMENPNQAKAIMEKIVIASQARLAAKRAKEITRKSSIKVGSLPGKLSDCSS 439 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +E+++VEGDSAGGSAK R+ QA+LPLRGKILNV EK NQ+I ++ Sbjct: 440 KDPSISEIYLVEGDSAGGSAKNGRDSHFQAILPLRGKILNVEKTRPEKAFENQEIRSMIT 499 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + + LRY K++IMTDADVDGAHI +LLLTFFY+ + ++EQ ++++ PP Sbjct: 500 AFGAGVQDEVDTSKLRYHKIVIMTDADVDGAHIRTLLLTFFYRFLRPVLEQGYVYIAQPP 559 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF++ +G YA+ + +++ E + ++ I R+KGLGEM ASQL ET MD R Sbjct: 560 LFKVQKGQSVRYAYTDRQLEELKAEMGE----RLSIQRYKGLGEMDASQLWETTMDPKSR 615 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 TL+RV I + + + LMG + + R FI E A F++++ Sbjct: 616 TLIRVTIED----AEYADQNFSMLMGEEVEPRKNFILENAHFVENLD 658 >gi|237741012|ref|ZP_04571493.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13] gi|229431056|gb|EEO41268.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13] Length = 635 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 256/648 (39%), Positives = 379/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + V+DNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 62 PDNIIEVIDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + TI QK+ RG P ++ N+ GT + F+ D +IF Sbjct: 121 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIIGACDVNEHGTIVRFKADAEIFETLI- 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K E + F GG+ +L +++ + Sbjct: 180 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKDDT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 235 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 352 IVSNSLKIFLEDNPNITKVIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ P Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G + VYA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 532 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634 >gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1] gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae] gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1] Length = 636 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 256/652 (39%), Positives = 376/652 (57%), Gaps = 23/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y + +I++LEGL+PVR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 2 AAEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGAQGLHHLVYEVVDNSIDEAMAGYCKNIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + V D+GRGIPV+ HPK S LE+++T LHAGGKFDN TY++SGGLHGVG Sbjct: 62 VTIKKGNIIQVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS EL V + ++ Q + RGIP P+++ K GT +TF+ D +IF Sbjct: 121 VSVVNALSTELIAEVNKDGKLYRQVYHRGIPEEPVKEVG-TSKKTGTTVTFKADDEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + A+L+ ++ ++E FY+ GG++ ++ E Sbjct: 180 TV-YDYKILANRLRELAFLNRGIRITLKDEREAEVVSNE-----FYYEGGIEMFITHLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ + + + T VE A+ + + I +YCN I T EGGTH G R A Sbjct: 234 NKKALHDKPIYLHKNEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 290 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR +A+ K I+ + +D V ++SV I P+F GQTKTKL + + + Sbjct: 291 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 E + + + Y QNP +LE +I ++ R RK R+ RK A+ LPGKLA Sbjct: 351 TEKLVVEGLNDYFSQNPKVIKAILEKIISAAQAREAARKARDLARRKNALESDSLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+++VEGDSAGG+AK R+R QA+LPLRGK+LNV A +KI +N+ + Sbjct: 411 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLK 470 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALGC + + +RY +VIIM DAD+DG+HI +LLLTFF++ M LI+ H+F+ Sbjct: 471 PIIAALGCGVGASFDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 530 Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL++I+ K+ YA+ +E + KIL E + K +I R+KGLGEM A QL ET M Sbjct: 531 AVPPLYKISFDKKNFLYAYSDEQRDKILAE---NKDRKYDIQRYKGLGEMNADQLWETTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R + +V + + LMG + R FI+ A ++ ++ Sbjct: 588 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRRDFIESNARYVKNLD 635 >gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134] gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134] Length = 659 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 266/669 (39%), Positives = 379/669 (56%), Gaps = 22/669 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 E ++ A + + Y A +IR LEGLE VRMRP MYIG + LHHL EV+DN++ Sbjct: 2 SEFTENQNGAVDAKNSEYSADNIRALEGLEAVRMRPSMYIGDVGVRGLHHLIWEVVDNSI 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AGY + I V ++ + +TV DNGRGIP + + S LE+++T LHAGGKFD Sbjct: 62 DEALAGYCDHITVEVNTDNSITVTDNGRGIPTGFNSQMQK-SALEVVMTVLHAGGKFDKD 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 TY++SGGLHGVG+S VNALS L TV R+ IF Q++ +G P + +E + +K GT Sbjct: 121 TYQVSGGLHGVGVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGE-SDKTGTV 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I F PD IF + + + + +YL+ ++ + E E+F Sbjct: 180 IHFVPDATIFTA-IEYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDG-KALTEDFLSE 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325 GGL +++ E R E + EK G V+ A + E SY N I T Sbjct: 238 GGLTEFVRYLDETRQSFLPEPIYVEGEKSGVP---VQVAFTYNHSYSENVYSYVNNINTI 294 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH SG R ALTR +K YA+ K + + DD ++SV + EP+F GQT Sbjct: 295 EGGTHISGFRRALTRTLKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFEGQT 354 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442 KTKL + + V+NA + +L +NP +A +++ VI ++ R RK RE+ RK Sbjct: 355 KTKLGNSEVMGVVDNATSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQRKN 414 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS+ EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNV A Sbjct: 415 VLSGSGLPGKLADCSEKDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKA 474 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLT 557 KI +N++I +++ ALG E LRY K+IIMTDADVDG+HI +L+LT Sbjct: 475 QEYKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTLILT 534 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISR 616 FF++ M DLIE ++++ PP + + +G K +YA +++ + ++E +GK + + R Sbjct: 535 FFFRYMRDLIESGYVYIALPPFYLVKKGKKELYAWNDDDRDVAIKELAGNGKPESVHVQR 594 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET M+ R+L +V I S + LMG R +FI+E Sbjct: 595 YKGLGEMNPEQLWETTMNPENRSLKQVTIE----SAAGADHLFSMLMGDDVPPRREFIEE 650 Query: 677 RASFIDDVG 685 A + +V Sbjct: 651 NAKYA-NVD 658 >gi|78211642|ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC9605] gi|78196101|gb|ABB33866.1| DNA gyrase, B subunit [Synechococcus sp. CC9605] Length = 655 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 4 ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHG Sbjct: 64 IVVVLGEDGSASVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213 VG+SVVNALS+ + VTV RQ + Q+F RG + L + + + GT + F+PD Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGVLASESQPAAESGETGTTVCFKPDL 182 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272 +IF FD A L + AYL+G V+ + ++E A + G P +E +++ GG+K Y Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDGEGNPHEETYFYEGGIKEY 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + + +I +EK G + + I + N I T +GGTH Sbjct: 243 VAYMNKEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V+N + + +L NP +LE I+ R+ RE V RK+ + L Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 422 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L+E Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E QK LE F + K I RFKGLGEM+ QL Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGE--KANYTIQRFKGLGEMMPKQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD RT+ RVEI L + LMG K R +FI+ ++ +D Sbjct: 600 WETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|124026793|ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL1A] gi|123961861|gb|ABM76644.1| DNA gyrase, subunit B [Prochlorococcus marinus str. NATL1A] Length = 655 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 264/656 (40%), Positives = 378/656 (57%), Gaps = 16/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A I++LEGLEPVR RPGMYIG T K LHHL EV+DNA+DE +AG+ Sbjct: 2 SKDSKVQEAYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I + L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++SGGL Sbjct: 62 DQITILLCEDGSASVSDNGRGIPTDLHPR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRITFRP 211 HGVGISVVNALS+ + VTV RQ + Q+F RG + L+ + + +N GT + F+P Sbjct: 121 HGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLK 270 D +IF D F+ L + AYL+G V+ + +++ + P +E +++ GG+K Sbjct: 181 DDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPHEEVYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y++ + + + EI +EK G + + I + N I T +GGTH Sbjct: 241 EYVEYMTKAKDSLHPEIIYVNSEKDGV-QVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A+ ++ ++ +++ +LSV + +PEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + YL NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDSLVGTSLSQYLEFNPNVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + E LRY +V+IMTDADVDGAHI +LLLTFFY+ DL Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++T+G Y ++E QK L F + K I RFKGLGEM+ Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGE--KANYTIQRFKGLGEMMPK 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T MD R + RVEI L + LMG K R +FI+ + +D Sbjct: 598 QLWDTTMDPTTRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSVDLD 649 >gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 260/649 (40%), Positives = 379/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALSTELEVFVHRDRKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565] gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565] Length = 652 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 381/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCTHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRGGKIYQQEYEIGKPLYSVKEVG-TSDITGTRQQFWPDGSIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K +++I ++ Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESEEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG ++ E LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ T+G Y + Q ++ + + + I R+KGLGEM A QL T M Sbjct: 545 IATPPLYLCTKGKVKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQLWSTTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652 >gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e] gi|46906230|ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b F2365] gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858] gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498301|ref|ZP_03666650.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1988] gi|224503071|ref|ZP_03671378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-561] gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes Clip81459] gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194] gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254830702|ref|ZP_05235357.1| DNA gyrase subunit B [Listeria monocytogenes 10403S] gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503] gi|254899680|ref|ZP_05259604.1| DNA gyrase subunit B [Listeria monocytogenes J0161] gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818] gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262] gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900] gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064] gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175] gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578] gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923] gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017] gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes] gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e] gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858] gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503] gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900] gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578] gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923] gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262] gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818] gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194] gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017] gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes 1816] Length = 646 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 375/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ Sbjct: 7 TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGL Sbjct: 67 TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V R+ + Q+F RG + +E++ + + RGT + F PDP+ Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD L T+ A+L+ + +E + +++F++ GG+++Y++ Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 + + +I + E+ VE ++ + + N I T EGGTHESG Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + + ++ +D+ I+S+ +P+F GQTKTKL + + Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ + + + ++++NP A K++E V+ +R + + + + LP Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++I G + Y + + + L G K I R+KGLGEM QL + Sbjct: 537 YIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWD 594 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V I + D ++ LMG + + R KFI++ A ++ ++ Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645 >gi|86132658|ref|ZP_01051251.1| DNA gyrase subunit B [Dokdonia donghaensis MED134] gi|85816900|gb|EAQ38085.1| DNA gyrase subunit B [Dokdonia donghaensis MED134] Length = 647 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 252/661 (38%), Positives = 382/661 (57%), Gaps = 23/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY Sbjct: 1 MSDDANKKQYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V+++ + +TV DNGRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DAIDVTINEDNSITVRDNGRGIPVGIHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L TV ++ ++ Q++ RG L P++ + GT +TF PD Sbjct: 120 HGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFTGTEVTFTPDDS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + AYL+ + + + E E E F+ GL +++ Sbjct: 179 IFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDG-EFENETFHSNEGLSEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR+ I + + + EK G VE A+ + + + SY N I T EGGTH +G Sbjct: 238 FLDGNRNPIIGNVISMEGEKNGVP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KK+A+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + + Y+ +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VTSAVSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KV+IM DADVDG+HI++L+LTFF++ M + Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ +PPL+ + +G K YA D++ + I E G + I R+KGLGEM A Sbjct: 535 LVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERL---GTQGVSIQRYKGLGEMNA 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 592 EQLWDTTMNPEFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAIYA-NID 646 Query: 686 T 686 Sbjct: 647 A 647 >gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262] gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262] Length = 646 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 374/651 (57%), Gaps = 20/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++ +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 11 ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGLHGVG Sbjct: 71 ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R+ + Q+F RG + +E + + + RGT + F PDP+IF + Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L T+ A+L+ + +E + +++F++ GG+++Y++ + Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337 + +I + E+ VE ++ + + N I T EGGTHESG + A Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300 Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + + ++ +D+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 301 LTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360 Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 + + + ++++NP A K++E V+ +R + + + + LPGKLA Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLA 420 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N++I Sbjct: 421 DCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIR 480 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ ++++ Sbjct: 481 TIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYI 540 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I G + Y + + + L G K I R+KGLGEM QL +T M+ Sbjct: 541 AQPPLYQIKHGKQIEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWDTTMN 598 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + D ++ LMG + + R KFI++ A ++ ++ Sbjct: 599 PEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645 >gi|296127762|ref|YP_003635014.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563] gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563] Length = 637 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 374/652 (57%), Gaps = 23/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y + +I++LEGL+PVR RPGMYIG T + LHHL EV+DN++DE +AGY I Sbjct: 3 AAEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGAQGLHHLVYEVVDNSIDEAMAGYCKNIT 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + + V D+GRGIPV+ HPK S LE+++T LHAGGKFDN TY++SGGLHGVG Sbjct: 63 VTIEKDNIIKVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS EL V + ++ Q + RG+P P+++ GT + F+ D IF Sbjct: 122 VSVVNALSTELIAEVRKDGKLYRQVYHRGVPEEPVKEVGTSTK-NGTTVIFKADADIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + A+L+ ++ + +E FY+ GG++ ++ E Sbjct: 181 TV-YDYKILANRLRELAFLNRGIRITLTDKREAETVSNE-----FYYEGGIEMFITHLNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ + + + T VE A+ + + I +YCN I T EGGTH G R A Sbjct: 235 NKKALHDKPIYLHKTEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 291 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR +A+ K I+ + +D V ++SV I P+F GQTKTKL + + + Sbjct: 292 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 E + + + Y QNP +LE +I + R RK R+ RK A+ LPGKLA Sbjct: 352 TEKLVVEGLNDYFSQNPKVIKAILEKIISAANAREAARKARDLARRKNALESDSLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+++VEGDSAGG+AK R+R QA+LPLRGK+LNV A +KI +N+ + Sbjct: 412 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLK 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALGC + + +RY +VIIM DAD+DG+HI +LLLTFF++ M LI+ H+F+ Sbjct: 472 PIIAALGCGVGASFDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 531 Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL++I+ K+ YA+ +E + KIL E + K +I R+KGLGEM A QL ET M Sbjct: 532 AVPPLYKISFDKKNFTYAYSDEQRDKILSE---NKDRKYDIQRYKGLGEMNADQLWETTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R + +V + + LMG + R FI+ A ++ ++ Sbjct: 589 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRRDFIEANARYVKNLD 636 >gi|255010097|ref|ZP_05282223.1| DNA gyrase subunit B [Bacteroides fragilis 3_1_12] gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 652 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 260/660 (39%), Positives = 386/660 (58%), Gaps = 21/660 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N + + +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + Sbjct: 5 QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL +++ + GT+ F PD I Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYAVKEVG-TADHTGTKQQFWPDDSI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + AYL+ ++ + + + + G + E FY GL+ +++ Sbjct: 183 FTETV-YDYKILASRLRELAYLNAGLRISLTD-RRVINEDGSFKHETFYSEEGLREFVRF 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+ +E AI + I SY N I T EGGTH +G Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE ++ K I I DD ++SV + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKIEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + ++YL ++P EA +++ VI + R RK RE+ ++ + + LPG Sbjct: 358 MGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV A K ++ Sbjct: 418 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 477 Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ ALG ++ + LRY K+IIMTDADVDG+HI +L++TFF++ M + Sbjct: 478 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 537 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I+ +L++ +PPL+ +G Y + +QK ++ + + I R+KGLGEM A Sbjct: 538 IQNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 598 QLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652 >gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4] gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4] Length = 638 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR+RPGMYIG TDEK LHHL EV+DN++DE +AG +LI+ Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + + V D+G GIPVE HPK KSTLE +LT LHAGGKF N Y+ SGGLHGVG Sbjct: 62 VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS L V R ++ Q+F +G ++ L ++ GT I F PD IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L K + A+L+ VK ++ +++ KE F++ GG+K++++ + Sbjct: 181 LN-FDRNVLAKRFREMAFLNKGVKIEFADERD-------GYKELFHYEGGIKSFVEYINK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E+ + EK T VE A+ + E I S+ N I T +GGTH G + A Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + YA ++ ++ DD+ ++SV + P+F GQTK KL + +A+ Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + Y +NP +++ + + RL R+ R+ V +K+ + LPGKLA Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E+F+VEGDSAGGSAK R+ QA+LPLRGKILNV A E++ N+++I Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K++IMTDADVDGAHI +LLLTF Y+ M L+E+ H+++ Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529 Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+ I +G K Y + E+ ++ LE++ + + I++ R+KGLGEM A QL +T M Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L++VEI+ + ++ + LMG + R +FI++ A + ++ Sbjct: 588 NPEHRVLIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638 >gi|217965929|ref|YP_002351607.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23] gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23] gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99] Length = 646 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ Sbjct: 7 TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGL Sbjct: 67 TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V R+ + Q+F RG + +E++ + + RGT + F PDP+ Sbjct: 126 HGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD L T+ A+L+ + +E + +++F++ GG+++Y++ Sbjct: 185 IFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 + + +I + E+ VE ++ + + N I T EGGTHESG Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + + ++ +D+ I+S+ +P+F GQTKTKL + + Sbjct: 297 FKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ + + + ++++NP A K++E V+ +R + + + + LP Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++I G + Y + + + L G K I R+KGLGEM QL Sbjct: 537 YIYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASL--DGDTKYSIQRYKGLGEMNPEQLWN 594 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V I + D ++ LMG + + R KFI++ A ++ ++ Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEDNAQYVKNLD 645 >gi|325287192|ref|YP_004262982.1| DNA gyrase subunit B [Cellulophaga lytica DSM 7489] gi|324322646|gb|ADY30111.1| DNA gyrase, B subunit [Cellulophaga lytica DSM 7489] Length = 646 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 264/661 (39%), Positives = 384/661 (58%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ +NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSEEANKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ +G +T DNGRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DNISVVINEDGSITTKDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L TV R+ I+ Q++ RG L P++ + GT +TF PD Sbjct: 120 HGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETEE-TGTIVTFYPDDT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + AYL+ V + + EK E FY GLK +++ Sbjct: 179 IFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKG-EFLSEVFYSEEGLKEFIK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR + E+ + + EK G VE A+ + E Y N I T EGGTH SG Sbjct: 238 FLDGNREQLIREVVSMEGEKNGIP---VEVAMVYNTSYSENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + +YL +NP +A +++ VI ++ R K RE+ RKT + LP Sbjct: 355 VSSAVSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ A E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KV+IM DADVDG+HI +L+LTFF++ M + Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRFMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE H+++ +PPL+ + +GTK YA +++ + +I + F G + I R+KGLGEM A Sbjct: 535 LIEGGHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSF----NGSVGIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ + RTL +V I S + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMNPDFRTLRQVTIENATES----DRIFSMLMGDEVPPRREFIEKNAVYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|253568817|ref|ZP_04846227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14] gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|251840836|gb|EES68917.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14] Length = 653 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 262/653 (40%), Positives = 385/653 (58%), Gaps = 20/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ V + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-VSDITGTRQQFWPDDTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + E+ G + E FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVRFIESSREH 248 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 249 LINDVIYLNSEKQGIP---IEIAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 305 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 306 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 365 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 366 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 425 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 426 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 485 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG ++ E LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 486 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 545 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + + R+KGLGEM A QL ET M Sbjct: 546 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGLENAVHTQRYKGLGEMNAQQLWETTM 605 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D + R L +V I+ + + + LMG R +FI+E A++ ++ T Sbjct: 606 DPDNRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 653 >gi|254302374|ref|ZP_04969732.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322566|gb|EDK87816.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 635 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 256/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 62 PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + I QK+ RG P ++ N+ GT + F+ D +IF Sbjct: 121 NALSEWLEVEVRKAGVIHYQKYHRGKPEEDVKIIGSCDENEHGTIVRFKADGEIFETLI- 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K E + F GG+ +L ++ + Sbjct: 180 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKEDT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 235 TIIEKPFYISSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 292 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 352 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 412 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ P Sbjct: 472 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++ G + VYA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 532 PLYKVSSGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 590 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 591 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 634 >gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805] gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805] Length = 655 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 271/658 (41%), Positives = 380/658 (57%), Gaps = 20/658 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 TEIQVVLGEDGSACITDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG P+ + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVDVTVRRQAQVHRQRFERGAPIGSLVSEPQPAEEEGRTGTSVRFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + ++E A + G P +E +++ GG+K Sbjct: 181 DIEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERENARDAEGNPHEEIYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328 Y+ + + EI EK G +VE A+ WC + I + N I T +GG Sbjct: 241 EYVAYMNAEKDALHPEIIYVNAEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297 Query: 329 THESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTK Sbjct: 298 THIEGLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 358 LGNTEVRGIVDSLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 KI N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ Sbjct: 478 KIYKNTEIQSLITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQK 537 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L+E ++++ PPL+++ +G Y ++E QK LE F + K I RFKGLGEM+ Sbjct: 538 ELVEGGYIYIACPPLYKVERGKNHTYCYNESELQKTLEGFGE--KANYNIQRFKGLGEMM 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD RT+ RVEI L + LMG K R +FI+ ++ +D Sbjct: 596 PKQLWETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328] gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328] Length = 638 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 256/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR+RPGMYIG TDEK LHHL EV+DN++DE +AG +LI+ Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + + V D+G GIPVE HPK KSTLE +LT LHAGGKF N Y+ SGGLHGVG Sbjct: 62 VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS L V R ++ Q+F +G ++ L ++ GT I F PD IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L K + A+L+ VK +S +++ KE F++ GG+K++++ + Sbjct: 181 LN-FDKNVLAKRFREMAFLNKGVKIEFSDERD-------GYKELFHYEGGIKSFVEYINK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E+ + EK T VE A+ + E I S+ N I T +GGTH G + A Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + YA ++ ++ DD+ ++SV + P+F GQTK KL + +A+ Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + Y +NP +++ + + RL R+ R+ V +K+ + LPGKLA Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E+F+VEGDSAGGSAK R+ QA+LPLRGKILNV A E++ N+++I Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K++IMTDADVDGAHI +LLLTF Y+ M L+E+ H+++ Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529 Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+ I +G K Y + E+ ++ LE++ + + I++ R+KGLGEM A QL +T M Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L++VEI+ + ++ + LMG + R +FI++ A + ++ Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638 >gi|260436552|ref|ZP_05790522.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109] gi|260414426|gb|EEX07722.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109] Length = 655 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 266/654 (40%), Positives = 379/654 (57%), Gaps = 16/654 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 4 ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V L +G V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHG Sbjct: 64 ILVVLGEDGSAAVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213 VG+SVVNALS+ + VTV RQ + Q+F RG + L + + + GT + F+PD Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGELASESQPAAESGETGTTVCFKPDL 182 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272 +IF FD A L + AYL+G V+ + ++E A ++ G P +E +++ GG+K Y Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDEEGKPHEETYFYEGGIKEY 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + + EI +EK G + + I + N I T +GGTH Sbjct: 243 VAYMNKEKDALHPEIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V+N + + +L NP + +LE I+ R+ RE V RK+ + L Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 422 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L+E Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E QK LE F + K I RFKGLGEM+ QL Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGE--KANYTIQRFKGLGEMMPKQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD RT+ RVEI + + LMG K R +FI+ ++ +D Sbjct: 600 WETTMDPTTRTMKRVEIEDAI----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|259418258|ref|ZP_05742176.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B] gi|259345653|gb|EEW57497.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B] Length = 652 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 347/652 (53%), Positives = 447/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + S+SD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 SPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VA+ +F Q+FSRG PL +EK N+RGT +TF D +IF Sbjct: 127 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARL K+ +SKAYL V+ W K P++ F+FPGGL+ YL Sbjct: 187 GS-HRFKPARLFKLVRSKAYLFSGVEIRW---KSAITDGETPQEATFHFPGGLRDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGELVGNKKAAQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEGAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L+++I R+EERLRR++++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K AR+R QA+LPL+GKILNV A S K+ +N +I Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARHREYQALLPLKGKILNVLGAASGKLTSNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L++V I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPKTRKLIQVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651 >gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119] gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119] Length = 640 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 259/655 (39%), Positives = 384/655 (58%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 NQIEVVIENDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D + Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L K + A+L+ + ++E E+ ++ +++ GG+K+Y++ Sbjct: 179 IFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQ----REDTYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ I E K VE AI + + SY N I T EGGTHE G Sbjct: 235 LLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D ++SV P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + F+ +L +NP A ++E I S R+ +K RE RK+A+ LP Sbjct: 352 VRQIVDRLFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K+ R+ QA+LPLRGKILNV A ++I NN Sbjct: 412 GKLADCSSKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y ++ K+ E + K +ISR+KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWQISRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +L+V++ + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPENRMMLQVKLEDAV----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46] gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343] gi|253564361|ref|ZP_04841818.1| subunit B [Bacteroides sp. 3_2_5] gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16] gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46] gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343] gi|251948137|gb|EES88419.1| subunit B [Bacteroides sp. 3_2_5] gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16] gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R] Length = 652 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 260/660 (39%), Positives = 388/660 (58%), Gaps = 21/660 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N + + +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + Sbjct: 5 QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL P+++ + + GT+ F PD I Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHTGTKQQFWPDDSI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + AYL+ ++ + + + + G + E FY GL+ +++ Sbjct: 183 FTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETFYSEEGLREFVRF 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+ +E AI + I SY N I T EGGTH +G Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + ++YL ++P EA +++ VI + R RK RE+ ++ + + LPG Sbjct: 358 MGAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV A K ++ Sbjct: 418 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 477 Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ ALG ++ + LRY K+IIMTDADVDG+HI +L++TFF++ M + Sbjct: 478 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 537 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I+ +L++ +PPL+ +G Y + +QK ++ + + I R+KGLGEM A Sbjct: 538 IQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 598 QLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652 >gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus 5a2] gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus 5a2] Length = 651 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 265/656 (40%), Positives = 382/656 (58%), Gaps = 21/656 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + Y A SI++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY Sbjct: 3 ETQKLQNTYSADSIQVLEGLEAVRKRPAMYIGDIGPKGLHHLVWEVVDNSIDEALAGYCT 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V + + +TV DNGRGIP + H K +S LE+++T LHAGGKFD TY++SGGLH Sbjct: 63 TIKVQIHSDNSITVSDNGRGIPTDIHAK-EKRSALEVVMTVLHAGGKFDKGTYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS L TV R I+ Q++++G PL P+++ RGT I F+PD I Sbjct: 122 GVGVSCVNALSTHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRGTTIHFQPDDSI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ + + AYL+ + + +E ++ +E F+ GGL ++ Sbjct: 181 FTT-TTYNYSTIAARLGELAYLNAGLTIELTDLREQDQEG-NFLQETFHSEGGLAEFVAY 238 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + R + + + EK + V+ A+++ + SY N I T EGGTH +G Sbjct: 239 LDDAREKLIPQPIYMEGEK---YDVPVQVALSYNTGFTENVVSYVNNINTIEGGTHVAGF 295 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +K YAE + K + I+ DD ++SV + EP+F GQTKTKL + + Sbjct: 296 RRALTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTKLGNAEV 355 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451 V++ + + +YL ++P EA ++ VI ++ R RK RE+ RK + LPG Sbjct: 356 VGAVDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQRKNVLTGGGLPG 415 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N EL++VEGDSAGG+AKQ R+R QA+LPLRGKILNV A +I +N+ Sbjct: 416 KLADCSDNDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEHRIYDNE 475 Query: 512 QIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 Q+ +++ ALG ++ E LRY KVIIMTDADVDG+HI +L+LTFFY+ + L Sbjct: 476 QLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFYRYLKVL 535 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLA 625 +E+ L++ PPL+ + +G++S Y E+ + +++F GK + I R+KGLGEM A Sbjct: 536 LERGFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDGKTESVNIQRYKGLGEMNA 595 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 QL T MD R+L +V I S + + LMG + R FIQ A + Sbjct: 596 EQLWTTTMDPAVRSLKQVTIE----SAAEADHLFSILMGDEVAPRRDFIQLHAKYA 647 >gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC 43183] gi|167698263|gb|EDS14842.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC 43183] Length = 653 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 262/661 (39%), Positives = 388/661 (58%), Gaps = 22/661 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + NY AS+I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL +++ GTR F PD I Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTAITGTRQQFWPDATI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + AYL+ +K + + + E+ G ++E FY GLK +++ Sbjct: 183 FTETV-YSYDILATRMRELAYLNAGIKITLTDLR-VKEEDGSYKQEVFYSVEGLKEFVRY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+GT VE AI + I SY N I T EGGTH +G Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + +YL ++P EA +++ VI ++ R+ RK RE ++ + + +PG Sbjct: 358 MGAVDQAVGEALSYYLEEHPKEAKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K + Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESD 477 Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ Sbjct: 478 EVNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+Q +L++ +PPL+ T+G Y ++ +QK ++ + + + R+KGLGEM Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNP 597 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V + + + + + LMG R FI++ A++ ++ Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652 Query: 686 T 686 Sbjct: 653 A 653 >gi|319898877|ref|YP_004158970.1| topoisomerase protein [Bartonella clarridgeiae 73] gi|319402841|emb|CBI76392.1| topoisomerase protein [Bartonella clarridgeiae 73] Length = 692 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 428/695 (61%), Positives = 525/695 (75%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSE---------KLKKSGEIPDSPAFANQSASDNYDASSIRI 51 M D++ DLFS L ++ + N + D Y A SIR+ Sbjct: 1 MNDNNKDLFSILNNAQSRIEAKEKNKQISLNSQEVSRAIPVSSSKNNTEEDEYSALSIRV 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+VSLD G+LTV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDVSLDRQGYLTVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPVENHP+ P+KSTLE+I+T LH+G KFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPVENHPQMPDKSTLEVIMTQLHSGAKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR+ ++ Q+FSRGIP S LE V N+RGTR+ F PD KIFG+K F+ ++ KM Sbjct: 181 EVARERKLYRQRFSRGIPQSGLENLGDVYNRRGTRVRFHPDSKIFGEKVAFEPGQIYKMA 240 Query: 232 QSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G VK W+CD + E IPEK F+FP GLK YL + L+N ++SE+F+G Sbjct: 241 RSKAYLFGGVKIRWNCDPIMLEGIKAIPEKAVFHFPDGLKDYLLSSLKNEYRVTSEVFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KT++ G H G+VEWAIAW N + SYCNTI T EGGTHE+GLR AL RG+K YAEL Sbjct: 301 KTKRHGDH-GSVEWAIAWYGGNACVQSYCNTIPTGEGGTHEAGLRQALLRGLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKR+ I SDD+MISA+ ILSVFIREPEF GQTK +L +++AQR VENA+RDPFDH+L Sbjct: 360 NKRSAIITSDDVMISAIAILSVFIREPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLAN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL+WVIER+EER++RR+ RE+NRKT +RKLRLPGKLADCSQN A G ELFIVE Sbjct: 420 SPQEATKLLDWVIERAEERVKRRQDREINRKTVVRKLRLPGKLADCSQNSAAGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE Sbjct: 480 GDSAGGSAKQARNRVNQAILPLRGKILNVASAAREKMSSSQTISDLILALGCGTRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE++IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K Y Sbjct: 540 DDLRYERIIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L+ K KIEI RFKGLGEM A QLKET M KRTLLR+ I+ Sbjct: 600 ARDDIHKDELLKTEFTE-KAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRIVIDSV-- 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +++T++++ LMGTK + RF+FIQE ++F D++ Sbjct: 657 DMQETKNTVENLMGTKPEARFRFIQENSTFADNLD 691 >gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80] gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80] Length = 644 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 258/657 (39%), Positives = 382/657 (58%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIENDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGSTEK-TGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L K + A+L+ + ++E E+ ++ +++ GG+K+Y Sbjct: 181 SEIFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQ----REDTYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + SY N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLSYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++SV P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E I S R+ +K RE RK+A+ Sbjct: 354 SEVRQIVDRLFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K+ R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ E + K +ISR+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWQISRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R +L+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPENRMMLQVKLEDAV----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|305664998|ref|YP_003861285.1| DNA gyrase subunit B [Maribacter sp. HTCC2170] gi|88707410|gb|EAQ99655.1| DNA gyrase subunit B [Maribacter sp. HTCC2170] Length = 646 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 382/661 (57%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSEEANKKNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V+++ + +T DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DRIDVTINEDNSITTRDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALSD L TV R I+ Q++ RG L P++ + + RGT +TF PD Sbjct: 120 HGVGVSCVNALSDHLKATVFRDGKIWEQEYERGKSLYPVKSVGETKE-RGTEVTFHPDTT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + +YL+ V + ++ EK E F GLK +++ Sbjct: 179 IFTQTIEYSYETLSNRMRELSYLNKGVTISITDKRQKDEKG-EFVSESFVSTEGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR ++ + + + EK G VE A+ + E Y N I T EGGTH SG Sbjct: 238 FLDGNREALTQGVISMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K + DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTSTLKKYADASGMLDKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V ++ + +YL ++P +A +++ VI ++ R K RE+ RKT + LP Sbjct: 355 VSSAVSQSVSEMLTNYLEEHPDDAKIIVQKVILAAQARHAATKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ E LRY KV+IM DADVDG+HI +L+LTFF++ M + Sbjct: 475 EEIKNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE H+++ +PPL+ + +G+K YA +E + +I E F G + I R+KGLGEM A Sbjct: 535 LIENGHVYIATPPLYLVKKGSKKRYAWSDEERDEIAESF----NGSVGIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL ++ I+ S + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMNPEFRTLRQITIDNATES----DRVFSMLMGDEVPPRREFIEKNAVYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056] gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056] Length = 653 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 261/661 (39%), Positives = 390/661 (59%), Gaps = 22/661 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + NY AS+I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEVVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL +++ + GTR F PD I Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTDITGTRQQFWPDDTI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + AYL+ +K + + + E+ G ++E FY GLK +++ Sbjct: 183 FTETV-YNYDILATRMRELAYLNAGIKITLTDLR-VKEEDGSYKQEIFYSVEGLKEFVRY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+GT VE AI + I SY N I T EGGTH +G Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + +YL ++P E+ +++ VI ++ R+ RK RE ++ + + +PG Sbjct: 358 MGAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K + Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESD 477 Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ Sbjct: 478 EVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+Q +L++ +PPL+ T+G Y ++ +QK ++ + + + R+KGLGEM Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNP 597 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V + + + + + LMG R FI++ A++ ++ Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652 Query: 686 T 686 Sbjct: 653 A 653 >gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697] gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA] gi|217986143|gb|EEC52482.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697] gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA] Length = 653 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 263/661 (39%), Positives = 391/661 (59%), Gaps = 22/661 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +NY AS+I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEVVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL +++ V GTR F PD I Sbjct: 124 GVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-VTEITGTRQQFWPDDTI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L + AYL+ +K + + + E+ G ++E FY GLK +++ Sbjct: 183 FTETV-YNYDILATRMRELAYLNAGIKITLTDLR-VKEEDGNYKQEIFYSVEGLKEFVRY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+GT VE AI + I SY N I T EGGTH +G Sbjct: 241 IDSSREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V+ A+ + +YL ++P E+ +++ VI ++ R+ RK RE ++ + + +PG Sbjct: 358 MGAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K + Sbjct: 418 KLADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESD 477 Query: 512 QIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ Sbjct: 478 EVNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQ 537 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+Q +L++ +PPL+ T+G Y ++ +QK ++ + + I R+KGLGEM Sbjct: 538 VIQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEMNP 597 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L +V + + + + + LMG R FI++ A++ ++ Sbjct: 598 EQLWETTMNPENRMLKQVHLE----NAAEADYTFSMLMGEDVGPRRDFIEKNATYA-NID 652 Query: 686 T 686 Sbjct: 653 A 653 >gi|332042671|gb|EGI78871.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4] Length = 649 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 258/653 (39%), Positives = 387/653 (59%), Gaps = 24/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AG+ + I V+++ Sbjct: 12 NYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGHCDNITVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +T D+GRGIPV+ H K S LE+++T + AGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITTEDDGRGIPVDLHKK-EGISALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L TV R I+ Q++ RG L P++ +KRGT +TF+PDP IF + Sbjct: 131 NALSEHLTATVYRNGKIWEQEYERGKSLYPVKAIGDT-DKRGTIVTFKPDPTIFTQTLEY 189 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + AYL+ + + E E E F+ GLK +++ R Sbjct: 190 NYDTLASRMRELAYLNKGITVHLIDKRSKKEDG-SYEGETFHSEEGLKEFIKFLDATREP 248 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + ++ + + EK G VE A+ + + SY N I T EGGTH SG R LT Sbjct: 249 LMKDVISFEGEKNGVP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRGLTHT 305 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYA+ + K I DD I+SV ++EP+F GQTKTKL + + V + Sbjct: 306 LKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVSAAVSQS 365 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQ 458 + + YL +NP +A +++ VI ++ R +K RE+ RKT + LPGKL+DCS+ Sbjct: 366 VSEMLSDYLEENPEDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDCSE 425 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+++VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A + K+ N++I ++ Sbjct: 426 QDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNIFT 485 Query: 519 ALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG ++ + LRY K++IM DAD+DG+HI +L+LTFF++ M +LIE H++ Sbjct: 486 ALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGHIY 545 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ I +G K YA ++E ++ I++EF + K I R+KGLGEM A QL +T M Sbjct: 546 IATPPLYLIKKGAKKQYAWNDEERKAIMQEFGESSK----IQRYKGLGEMNAEQLWDTTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + RTL ++ I+ + + + LMG + R +FI++ A + ++ Sbjct: 602 NPEFRTLRQIHIDNGV----EADRVFSMLMGDEVPPRREFIEKNAIYA-NIDA 649 >gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126] gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126] Length = 653 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 259/660 (39%), Positives = 384/660 (58%), Gaps = 22/660 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + +Y A +I +LEGLE VR RP MYIG K LHH+ EV+DN++DE +AG+ Sbjct: 2 STEKDNKNKDYSAGNITVLEGLEAVRKRPAMYIGDVGVKGLHHMIWEVVDNSIDEAMAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V ++ + +TV+D+GRGIPV+ H K +S LE+++T LHAGGKFD +Y++SGG Sbjct: 62 CTTITVEINEDNSVTVMDDGRGIPVDIHEK-EGRSALEVVMTVLHAGGKFDKDSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG+S VNALS L TV R I+ Q++S G P P++ + + GT+I F+PD Sbjct: 121 LHGVGVSCVNALSTMLKATVYSRDGKIYEQEYSEGFPKEPVKPVGET-DVTGTKIQFKPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + F + + AYL+ +K ++ E E E F+ GGL + Sbjct: 180 ASIFME-TEFKYETVASRLRELAYLNAGIKIKLQDHRDKDENGDSKE-ENFFSEGGLLEF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ +R + + + EK G V+ A+ + E SY N I T EGGTH Sbjct: 238 VEYLDVSREKLIPQPIYMEGEKNGVP---VQVALNYNTSYSENVVSYVNNINTIEGGTHV 294 Query: 332 SGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 SG R ALTR +K YA+ + K+ I I DD I+SV + EP+F GQTKTKL + Sbjct: 295 SGFRRALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 354 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448 D VE+ + + ++L +NP A +++ VI ++ R +K RE+ RK + Sbjct: 355 SDVMGAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMVQRKNVMSGSG 414 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A KI Sbjct: 415 LPGKLADCSEKDPSICELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQEHKIY 474 Query: 509 NNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +N +I +++ ALG R ++ E E LRY K++IMTDADVDG+HI +L+LT F++ M Sbjct: 475 DNDEIKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSHIRTLILTLFFRYM 534 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGE 622 +LI+ ++++ PPL+ I +G Y E+ + ++++E G +G + + R+KGLGE Sbjct: 535 RELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGTEGAVHLQRYKGLGE 594 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL T MD + R + +V + S + + LMG + R FI++ A + Sbjct: 595 MNPEQLWTTTMDPHTRKMKQVSVE----SAAEADHLFSMLMGDEVPPRRDFIEKNAKYAK 650 >gi|315187334|gb|EFU21090.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6578] Length = 635 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 253/648 (39%), Positives = 384/648 (59%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A I++L GLEPVR RPGMYIG T E+ LHHL EV+DN++DE +AG + IEV ++ Sbjct: 2 SYTAEQIQVLRGLEPVRKRPGMYIGSTGEEGLHHLVYEVVDNSIDEALAGVCSRIEVVIE 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +TV D+GRGIPV+ HP+ S LE+++T LHAGGKFD TY++SGGLHGVG+SVV Sbjct: 62 PGNVVTVTDDGRGIPVDLHPE-EKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ V V R I Q++ RG+PL P+E + + T F+PD +IF F Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETT-EF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + + A+L+ ++ + K + F + GGL+ ++ +NR+ Sbjct: 179 SFDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHV-----FKYEGGLREFVAYLNKNRTS 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E + + +E AI + + S+ N I T EGGTH G R ALTR Sbjct: 234 LQKEPIYFEGARDHV---EIECAIEYNDSYTETFFSFVNNINTKEGGTHVVGFRSALTRC 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K ++ DD+ +LS+ + EP+F GQTKTKL + D + VE+ Sbjct: 291 LNDLFKQSKFAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESF 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + + ++P + +LE V++ + R+ RK RE+ R+ + + + LPGKLADC + Sbjct: 351 VYEQLQAHFARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIE 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV EK+ N ++ ++ Sbjct: 411 KDPAKCEIFIVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG +++ LRY KVIIM DADVDG+HI +LLLTFFY+ M +L+E+ H+++ PP Sbjct: 471 SLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+++ + YA+ +E + +ILE F KK+ K +I + R+KGLGEM QL ET M+ Sbjct: 531 LYKVWVKNEVEYAYTDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWETTMNPAT 590 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++++ + + + ++ LMG + R KFI+E A F+ ++ Sbjct: 591 RNIIQIRVEDAV----EAEEVFTTLMGDQVAPRRKFIEENALFVTNLD 634 >gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483] gi|156110640|gb|EDO12385.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483] Length = 652 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 260/653 (39%), Positives = 382/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG + + LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + I R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ T Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652 >gi|291461019|ref|ZP_06026484.2| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693] gi|291379423|gb|EFE86941.1| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693] Length = 639 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 377/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY N I+V + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCNKIDVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PDNIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 NALS+ L V V ++ ++ QK+ RG P ++ + GT + F+ D IF Sbjct: 125 NALSEWLEVEVRKEGNVYYQKYYRGKPEEDVKIIGSCEESEHGTTVRFKADRDIFETLI- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEET-----YKFDGGILDFLNEIVKEEA 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIVDKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ V I+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEISGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSNSLKIFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++ P Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++ G + +YA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLGQMNQENK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|325265438|ref|ZP_08132161.1| DNA gyrase, B subunit [Clostridium sp. D5] gi|324029296|gb|EGB90588.1| DNA gyrase, B subunit [Clostridium sp. D5] Length = 645 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 377/648 (58%), Gaps = 19/648 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I VS++ Sbjct: 11 EYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDTIFVSIN 70 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 71 KGNSITVIDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDKAG 221 NALS L V + + I+ Q++ RG + L + +++ GT++TF PD +IF + Sbjct: 130 NALSQWLEVEIYNEGKIYKQRYERGKVVDKLRVVGECEDEKSGTKVTFFPDDEIFEETV- 188 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + + A+L+ +K ++ ++ F++ GG+K ++ +++ Sbjct: 189 FDYDTLKQRFREMAFLTKGLKIVLRDER-----GEELVEKVFHYEGGIKEFVTYLNRSKT 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTR 340 + +I + K VE A+ + + T + N I T EGGTH G R ALT+ Sbjct: 244 ALYEQIIYCEGMKDNV---AVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTK 300 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 YA + + ++ +D+ I+SV I +P+F GQTK KL + +A+ V+N Sbjct: 301 TFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDN 360 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L QNP A +E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 361 IVSTQLEIFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCS 420 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK AR+RS QA+LPLRGKILNV A +KI N +I ++ Sbjct: 421 DKDPKNCEIYIVEGDSAGGSAKTARDRSTQAILPLRGKILNVEKARLDKIYANAEIKAMI 480 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI+ +++L P Sbjct: 481 TAFGTGIHDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQP 540 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+ +E +IL E + G K I R+KGLGEM A QL ET MD Sbjct: 541 PLYKLEKNKKVWYAYSDEELSQILSEVGRDGNNK--IQRYKGLGEMDAEQLWETTMDPEH 598 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV +++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 599 RILLRVTMDE--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 644 >gi|309791890|ref|ZP_07686373.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6] gi|308226062|gb|EFO79807.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6] Length = 636 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 249/652 (38%), Positives = 371/652 (56%), Gaps = 22/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +YDAS I +LEGL+ VR RPGMYIG TD LHH+ EV+DN++DE +AGYA+ I Sbjct: 2 TTEPQSYDASQITVLEGLDAVRKRPGMYIGPTDINGLHHMIKEVVDNSVDEALAGYADTI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ +G + V DNGRGIPV+ HPK S L++ T LHAGGKF + Y++S GLHGV Sbjct: 62 TITIFADGSVQVTDNGRGIPVDIHPKH-QVSALQLAATELHAGGKFGDGGYKVSSGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ + V R + ++ Q++ G P P+ + GT I F PD IF Sbjct: 121 GLSVVNALSEWMRAEVRRHDKLWLQEYRTGKPQGPVVAVGEAEG-TGTSIHFMPDVTIFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D + + + + AYL+ ++ + + E FYF GG+ +Y++ Sbjct: 180 DGIDYQFRVVAQRLREMAYLTKGLRFKFEDQRTQNE-------VSFYFEGGIISYVRHLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335 + + + F + + VE A+ + + ++ N I +GG H SG R Sbjct: 233 KAKGALHRLPFYVE---RTVGEVAVEVAMQYTDTYDTDSIYAFANNINNTDGGAHLSGFR 289 Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ DD+ ++SV +++P+F+ QTK KLVS +A Sbjct: 290 TALTRVINTYARNKNLLKENDANLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAA 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V + D F +L +NP EA +++E + + RL +K R+ RK+A+ LPGKL Sbjct: 350 SAVGTVMGDAFGTWLDENPTEARRIIEKAVSAARTRLAVQKVRDTARKSAMDGFSLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS + +EL+IVEGDSAGG+AKQ R+R QA+LPLRGKILNV + +K+ +N ++ Sbjct: 410 ADCSDSNPARSELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRIDKMLSNAEV 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G + E LRY ++I+M DADVDG+HI +LLLTFF++ M LI HL+ Sbjct: 470 KALITAIGASIGELFSTEKLRYHRIILMADADVDGSHIRTLLLTFFFRHMRQLITSGHLY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+RI G + VY + + + L + K +I R+KGLGEM A QL ET + Sbjct: 530 IAQPPLYRIKHGREQVYTYSDAERDSYLAKLPAGTKA--DIQRYKGLGEMNAEQLWETTL 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R +L+V + + ++ LMG R +FIQ AS + D+ Sbjct: 588 NPANRIILQVTLED----AQQADETFTMLMGDLVPPRRRFIQTHASEVRDLD 635 >gi|298675298|ref|YP_003727048.1| DNA gyrase subunit B [Methanohalobium evestigatum Z-7303] gi|298288286|gb|ADI74252.1| DNA gyrase, B subunit [Methanohalobium evestigatum Z-7303] Length = 634 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 380/645 (58%), Gaps = 21/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD+++I++LEGLE VR RP MYIG D + LHHL EV+DN++DE +AGY + I L+ Sbjct: 7 YDSTNIQVLEGLEAVRKRPSMYIGSVDSRGLHHLVYEVVDNSIDEALAGYCSEINTILNS 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +T+ D+GRGIPV+ H K+ NKS LE+++T LHAGGKFD ++Y++SGGLHGVG+SVVN Sbjct: 67 DGSVTLEDDGRGIPVDTHAKY-NKSALEVVMTLLHAGGKFDKNSYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 LS+ L V V R + + Q + +G P + ++ + GT+ TF+PD +IF FD Sbjct: 126 GLSEWLDVEVKRDDKRYYQHYEKGYPKTEVQVLGESEG-NGTKFTFKPDSEIFEST-EFD 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ +K ++ +++ F + GG+ ++++ +NRS I Sbjct: 184 YDSLSTRLRELAFLNKGIKITIKDERSE-----EGQEDVFQYDGGIVSFVKHLNKNRSPI 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGI 342 E + E GT VE ++ + + E S+ N I T EGGTH G + ALTR Sbjct: 239 HEEPIYFEGESDGTI---VEISLQYTDSYGEYVYSFANNINTHEGGTHVIGFKTALTRVA 295 Query: 343 KKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 Y + ++ + + +D+ I+S I +P+F GQTKT+L + D + VE+ + Sbjct: 296 NDYIRKNEIEKGNVRLTGEDIREGLTAIISAKIPDPQFEGQTKTRLGNSDVKGVVESLVT 355 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 + YL +NP A +++ + R ++ RE RK+A+ LPGKLADCS+ Sbjct: 356 EELSRYLEENPKIANSIIKKALSAKRAREAAKRARELTRRKSALEVSTLPGKLADCSETD 415 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +E+F+VEGDSAGGSAK R+R QA+LP RGKI+NV A K+ N +I+ L+ A+ Sbjct: 416 PSVSEIFLVEGDSAGGSAKMGRDRRFQAILPFRGKIINVEKARLSKVLKNNEILSLITAM 475 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + RY KVIIMTDADVDGAHI +L+LTFF++ M ++++ ++++ PPL+ Sbjct: 476 GTGIGEDFDINKARYHKVIIMTDADVDGAHIRTLILTFFFRYMNEMVDNGYVYIAQPPLY 535 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 RI +G K Y H E+ K L+E + G + I R+KGLGEM QL T M+ R L Sbjct: 536 RIKKGKKEFYIHTEKEKNAKLKELGEKG---VSIQRYKGLGEMNPEQLWATTMNPESRKL 592 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + + + LMG + + R +FI++ A+ + ++ Sbjct: 593 TQVTMED----AAAADEMFSILMGEEVEPRRQFIEKHATEVVNLD 633 >gi|254520691|ref|ZP_05132747.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA] gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA] Length = 637 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 258/651 (39%), Positives = 385/651 (59%), Gaps = 20/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I Sbjct: 3 EKSNQSYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGFCTEI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V+++ + +TV+DNGRG+P HPK KST+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 63 SVAINEDNSITVIDNGRGMPTGIHPKM-GKSTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ VTV+R+ I+ QK+SRG ++ L K K GT+++F+PD +IF Sbjct: 122 GASVVNALSEWCEVTVSREGDIWQQKYSRGNAVTDLSKIGKTEEH-GTKVSFKPDTEIFE 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ +K S +E + E +++ GG+K ++ Sbjct: 181 ET-EYDFDILANRLRELAFLNKGIKIILSDARE------EGKTEVYHYEGGIKEFVSYLS 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 N+ ++ + + EK G VE ++ + + E + N I T EGGTH SG + Sbjct: 234 RNKEVLHQDPIYIEGEKDGII---VEISLQYNDSYTENLYSFANNIDTIEGGTHLSGFKT 290 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I Y + + + ++ DD+ ++SV I EP+F GQTKTKL + + + Sbjct: 291 ALTRVINDYGKKFNHLKENDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + + +L +NP +++ + + R RK RE+ RK+ + + LPGKLA Sbjct: 351 VVDSIVGEGVSIFLEENPGIGKIIIDKALMAARARDAARKARELTRKSVLERSSLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ RNR QA+LPLRGKILNV ++I I Sbjct: 411 DCSSKDPLECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKQRLDRILTADSIK 470 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A G + EE LRY ++IIMTDADVDGAHI +LLLTFF++ M L++ H+++ Sbjct: 471 SMVTAFGAGIGDDFDEEKLRYNRIIIMTDADVDGAHIRTLLLTFFFRYMRGLLDGGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ + K YA+ + +K+L E I R+KGLGEM A+QL +T MD Sbjct: 531 AQPPLYQVKKNKKEYYAYSDAELEKLLSEIGGKDNST-NIQRYKGLGEMNANQLWDTTMD 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+ + + + LMG K + R +FIQ+ A + ++ Sbjct: 590 PEKRVLLKATVEDAI----AADEIFTILMGDKVEPRREFIQKNAKKVSNLD 636 >gi|145218835|ref|YP_001129544.1| DNA gyrase subunit B [Prosthecochloris vibrioformis DSM 265] gi|145204999|gb|ABP36042.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265] Length = 642 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 264/648 (40%), Positives = 375/648 (57%), Gaps = 24/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A++I++L+G+ VRMRP MYIG + LHHL E++DN++DE + GY + I VSL+ Sbjct: 13 NYGATNIQVLDGIAHVRMRPAMYIGDIHSRGLHHLIYEIVDNSIDETLGGYNDYIFVSLN 72 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV+D+GRGIPV+ HP KS LE+++T + AGGKFD Y++SGGLHGVG SVV Sbjct: 73 PDGSVTVIDHGRGIPVDIHP-DKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGVGASVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ V V R + Q++ RG+P +++ RGT+ TF PDP+IF F Sbjct: 132 NALSEWCEVEVYRDGKAWFQRYHRGVPEGDVKEIGATSE-RGTKTTFMPDPEIFKV-TEF 189 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ++ + A+L+ +K E+E F+F GGLK ++ NR Sbjct: 190 RKDIIIDRMRELAFLNSNLKIVVQD--------IEGEQETFHFEGGLKEFVLFTDANRLN 241 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E EK T VE A+ + + + SY N I T EGGTH +G R ALTR Sbjct: 242 LIKEPVYIYGEKDSTI---VEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRT 298 Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA+ + + + DD ++SV + EP+F GQTKTKL + + Q VE+ Sbjct: 299 LNSYAQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESV 358 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 L + + NP ++E V + R RK +E RK+ + LPGKLADCS Sbjct: 359 LNEQLSDFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSI 418 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ N++I ++ Sbjct: 419 NDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKLLENEEIKTIIL 478 Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG ++ +E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE +++ P Sbjct: 479 ALGTNFGEEEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQP 538 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+ + G YA D+E + I + +K GK + I R+KGLGEM QL T MD Sbjct: 539 PLYLVKAGKDQQYAWDDEERNSIADMMRK-GKANVHIQRYKGLGEMNPEQLWSTTMDPEH 597 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + + LMG K + R +FI++ A ++ + Sbjct: 598 RSLLQVSVENAM----EADKVFSTLMGDKVEPRREFIEKNARYVRRLD 641 >gi|256846674|ref|ZP_05552130.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2] gi|294784381|ref|ZP_06749672.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27] gi|256717894|gb|EEU31451.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2] gi|294487953|gb|EFG35308.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27] Length = 639 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 378/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + V+DNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PDNIIEVIDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + TI QK+ RG P ++ + GT + F+ D +IF Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKVIGTCDESEHGTIVRFKADGEIFETLI- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K E + F GG+ +L +++ + Sbjct: 184 YNYFTLSNRLKELAYLNKGLTITLSDLRKDEKKE-----ETYKFDGGILDFLNEIVKDDT 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ P Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G + VYA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334] Length = 646 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 373/651 (57%), Gaps = 20/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++ +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ IE Sbjct: 11 ESASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFCTEIE 70 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGLHGVG Sbjct: 71 ITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGLHGVG 129 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R+ + Q+F RG + +E + + + RGT + F PDP+IF + Sbjct: 130 ASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVHFTPDPQIFTE 188 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L T+ A+L+ + +E + +++F++ GG+++Y++ + Sbjct: 189 TTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVEHLNK 243 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337 + +I + E+ VE ++ + + N I T EGGTHESG + A Sbjct: 244 AKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESGFKTA 300 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + ++ +D+ I+S+ +P+F GQTKTKL + +A+ Sbjct: 301 LTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARSI 360 Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 + + + ++++NP A K++E V+ +R + + + + LPGKLA Sbjct: 361 TDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGKLA 420 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N++I Sbjct: 421 DCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIR 480 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ ++++ Sbjct: 481 TIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYI 540 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I G + Y + + + L K K I R+KGLGEM QL +T M+ Sbjct: 541 AQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYSIQRYKGLGEMNPEQLWDTTMN 598 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + D ++ LMG + + R KFI+E A ++ ++ Sbjct: 599 PEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645 >gi|237716665|ref|ZP_04547146.1| subunit B [Bacteroides sp. D1] gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4] gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22] gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a] gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22] gi|229442648|gb|EEO48439.1| subunit B [Bacteroides sp. D1] gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4] gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22] gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a] gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A] gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22] Length = 652 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 381/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDGTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG + + LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + I R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652 >gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIQYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis] Length = 627 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 381/644 (59%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|13471034|ref|NP_102603.1| DNA topoisomerase IV subunit B [Mesorhizobium loti MAFF303099] gi|14021778|dbj|BAB48389.1| DNA topoisomerase [Mesorhizobium loti MAFF303099] Length = 685 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 417/684 (60%), Positives = 526/684 (76%), Gaps = 10/684 (1%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF---ANQSASDNYDASSIRILEGLEPVR 59 DD+ DLF + Q Q + + + + A A + S+ Y A+ I +LEGLEPVR Sbjct: 2 DDNNDLFGNMDKQPQPVRTPARPADPLVQAAAKRPAATKDGSEGYSAADIEVLEGLEPVR 61 Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A I+V L +GFLTV DNGRGIPV+ Sbjct: 62 RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGFLTVTDNGRGIPVD 121 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HPKF K LE+I+TTLH+GGKFD+ YE SGGLHGVG+SVVNALSD L V VAR + Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + Q+FSRGIP+S LE+ +V N+RGT+I F PD +IFG A F+ ARL +MT+SKAYL G Sbjct: 181 YRQRFSRGIPVSGLEQLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240 Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 V+ W+CD I EK P K EF+FPGGLK YL+ L + ++ EIF GK+EK+G H Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSEKQGGH 300 Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358 G++EWA+ W + I SYCNTI T EGGTHE+G R LTRG++ YA+L NKRA + Sbjct: 301 -GSLEWAVTWFGGDGFINSYCNTIPTGEGGTHEAGFRNVLTRGLRAYADLVGNKRASIVT 359 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L NP EA+KL Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQAR+R++QAVLPLRGKILNVASAG++K+ NQQI DL+QALGC TRS+YR+EDLRY++V Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFFYQEM L+ HL+L PPL+ I QG K YA D+ HK Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L + G+GK+E+ RFKGLGEM+ASQLKET MD KRTLLRV++N+ ++ T+D Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMASQLKETTMDPRKRTLLRVDVNEIDSA---TKDR 655 Query: 659 INKLMGTKADERFKFIQERASFID 682 +++LMGTK + RF+FIQERA F + Sbjct: 656 VDELMGTKPEARFRFIQERAEFAE 679 >gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3] gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3] Length = 638 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 385/653 (58%), Gaps = 21/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR+RPGMYIG TDEK LHHL EV+DN++DE +AG +LI+ Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + + V D+G GIPVE HPK KSTLE +LT LHAGGKF N Y+ SGGLHGVG Sbjct: 62 VTIKKDNSIIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS L V R ++ Q+F +G ++ L ++ GT I F PD IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L K + A+L+ VK ++ +++ KE F++ GG+K++++ + Sbjct: 181 LN-FDRNVLAKRFREMAFLNKGVKIEFADERD-------GYKELFHYEGGIKSFVEYINK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E+ + EK T VE A+ + E I S+ N I T +GGTH G + A Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289 Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + YA ++ ++ DD+ ++SV + P+F GQTK KL + +A+ Sbjct: 290 LTRALNDYARNKSILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + Y +NP +++ + + RL R+ R+ V +K+ + LPGKLA Sbjct: 350 VDSVVYEHLSFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E+F+VEGDSAGGSAK R+ QA+LPLRGKILNV A E++ N+++I Sbjct: 410 DCQSSDIEYNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIK 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K++IMTDADVDGAHI +LLLTF Y+ M L+E+ H+++ Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529 Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+ I +G K Y + E+ ++ LE++ + + I++ R+KGLGEM A QL +T M Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEQELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L++VEI+ + ++ + LMG + R +FI++ A + ++ Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638 >gi|260588813|ref|ZP_05854726.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] gi|260540592|gb|EEX21161.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] Length = 641 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 265/654 (40%), Positives = 378/654 (57%), Gaps = 20/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + Sbjct: 2 STEIKTEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+VS++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHG Sbjct: 62 IDVSINEDNSITVIDNGRGIPVGINQKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VG SVVNALS L VT+ + I+ Q++ RG + L+ + K GT +TF PDP+I Sbjct: 121 VGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ ++ +E EK F++ GG+K ++Q Sbjct: 181 FEETI-FDFGTLKHRFREIAFLTKGLRIIARDKREEEEKEVT-----FHYEGGIKEFVQY 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + + EI + K G VE A+ + + N I T EGGTH G Sbjct: 235 LNKSNTALYEEILYFEGNKDGVM---VEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALT+ +YA + + ++ +D+ I+SV I +P+F GQTK KL + +A Sbjct: 292 RNALTKTFNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + V+ + + + YL QNP A ++E ++ + R+ + RK+A+ LPG Sbjct: 352 RGAVDGIVSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N Sbjct: 412 KLADCVDKDPSKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYANA 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q + Sbjct: 472 EIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++L PPLF+I + K YA+ E+ + IL E G I R+KGLGEM A QL ET Sbjct: 532 VYLAKPPLFKIEKNKKIHYAYTEQEQADILAEIGMDG---CNIQRYKGLGEMDADQLWET 588 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R L+RV +++D S + + LMG K + R +FI+E A + ++ Sbjct: 589 TMDPESRILMRVVMDED--STSELDLTFTTLMGDKVEPRREFIEENAKYAKNLD 640 >gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis] Length = 627 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|257462460|ref|ZP_05626872.1| DNA gyrase subunit B [Fusobacterium sp. D12] gi|317060117|ref|ZP_07924602.1| DNA gyrase subunit B [Fusobacterium sp. D12] gi|313685793|gb|EFS22628.1| DNA gyrase subunit B [Fusobacterium sp. D12] Length = 638 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 256/651 (39%), Positives = 377/651 (57%), Gaps = 22/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY A +I +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY N I VS+ Sbjct: 2 NNYGAQNITVLEGLEAVRKRPGMYIGTTSARGLHHLVWEVVDNSVDEALAGYCNRITVSI 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV+ HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVGISV Sbjct: 62 LPDNIIQVEDNGRGIPVDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219 VNALS+ V V R+ ++ QK+ RG P+ ++ + GT +TF+PD +IF Sbjct: 121 VNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGETTGTIVTFKPDIEIFETV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L + AYL+ ++ + I +KE F F GG+ +L+ + Sbjct: 181 I-FEYEVLQHRLKELAYLNRGLEINLLDCR-----NEIGKKESFQFEGGISDFLKEVTQE 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + S+ + + + + V+ A + ++ I S+ N I T EGG+H +G R L Sbjct: 235 NQTLLSKQIHIEGQAE---QVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSHVTGFRTCL 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ I + ++ + D+ V I+SV + +P+F GQTKTKL + + V Sbjct: 292 TKVINDIGKSQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455 L +L NP + ++E ++ + R ++ RE + + + LPGKLAD Sbjct: 352 NTVLSTDLKIFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV AG K + +I Sbjct: 412 CSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESDEIRA 471 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A G + + E LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ Sbjct: 472 MVTAFGTNIGEESFDLEKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++++ G YA+ + +++L+ + K K + R+KGLGEM QL ET MD Sbjct: 532 AQPPLYKVSFGKSIRYAYTDSQLKEMLQGMEGENK-KYTLQRYKGLGEMNPEQLWETTMD 590 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FIQE A ++ ++ Sbjct: 591 PEARLLLKVSID----NAREADMLFDKLMGDKVEPRREFIQEHAEYVKNID 637 >gi|260172424|ref|ZP_05758836.1| DNA gyrase subunit B [Bacteroides sp. D2] gi|315920720|ref|ZP_07916960.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2] gi|313694595|gb|EFS31430.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2] Length = 652 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 260/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG + + LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTEEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + + R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAVHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ T Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652 >gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185] gi|149128150|gb|EDM19370.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185] Length = 652 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDDTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRITLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG ++ E LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + I R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ T Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652 >gi|254504091|ref|ZP_05116242.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11] gi|222440162|gb|EEE46841.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11] Length = 691 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 400/695 (57%), Positives = 511/695 (73%), Gaps = 15/695 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSG--------EIPDSPAFANQSAS-DNYDASSIRI 51 M+ DLF+ S + + ++ ++ + +A +Y A+ I + Sbjct: 1 MS-GKDDLFAGNAAVSNPVGSEPAPAPKPAPTPVADLSEARKKSQAAAEYSDYSAADIEV 59 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A I+VSL +G+L + D Sbjct: 60 LEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATWIDVSLGADGYLNITD 119 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPV+ HPKF +KS LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALSDEL V Sbjct: 120 NGRGIPVDPHPKFKDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDELVV 179 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR ++ Q F RG P PLE +N+RGT + F+PD IFG A F ARLLKM Sbjct: 180 EVARSRKLYRQIFRRGHPQGPLEHIGDTQNRRGTMVRFKPDEMIFGKGAKFQPARLLKMA 239 Query: 232 QSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G V+ W C E ++EK P + F+FPGGL+ +L+ +L + E+F+G Sbjct: 240 RSKAYLFGGVEIRWHCAPELLSEKDETPAEAVFHFPGGLRDFLKERLGKERPVVDEVFSG 299 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 +T+K G H G VEWA++W + I SYCNT+ T EGGTHE+G R AL RG+K Y EL Sbjct: 300 RTDKTGKH-GAVEWAVSWFAGDGFINSYCNTVPTPEGGTHEAGFRYALLRGLKAYGELVN 358 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NK+A I DD+M SA G+LSVFIREPEF GQTK KL + +A R E A+RD FDH+L Sbjct: 359 NKKASIITGDDVMTSAGGMLSVFIREPEFVGQTKDKLATNEATRVAETAVRDAFDHWLTA 418 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P +A KLLEWVI+R+EERLRRR++++V RKTA+RKLRLPGKLADCS + + GTELFIVE Sbjct: 419 SPNQANKLLEWVIDRAEERLRRRQEKDVARKTAVRKLRLPGKLADCSTSQSEGTELFIVE 478 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNRSNQA+LPLRGKILNVA+AG +K+ NQQ+ DL+QALGC TRS Y E Sbjct: 479 GDSAGGSAKQARNRSNQAILPLRGKILNVANAGRDKLVANQQLADLIQALGCGTRSSYAE 538 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 +DLRYE+++IMTDADVDGAHIASLL+TFFY+EM +LI HL+L PPL+R++QG K++Y Sbjct: 539 KDLRYERIVIMTDADVDGAHIASLLITFFYREMPELIRGGHLYLAVPPLYRLSQGGKTLY 598 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L K GK K+EI RFKGLGEML +QLKET MD +KR+LL+V +++ Sbjct: 599 ARDDMHKDELLATVFK-GKSKVEIGRFKGLGEMLPAQLKETTMDPSKRSLLKVRVDE--L 655 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ DT D++ +LMG K + RF+FIQ+ A F DD+ Sbjct: 656 AIADTNDTVERLMGNKPEARFRFIQDNAEFADDLD 690 >gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603] gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603] Length = 640 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 253/655 (38%), Positives = 385/655 (58%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DEINVTIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS++L V V R +TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + + A+L+ ++ + +++ + ++ +++ GG+K+Y++ Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDI----RQDSYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333 EN+ I E K VE AI + + +Y N I T EGGTHE G Sbjct: 235 MLNENKEPIHGEPIYIHQSKDDI---EVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + F+ +L +NP ++E I S R+ +K RE RK+A+ LP Sbjct: 352 VRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K R+ S QA+LPLRGKILNV A ++I NN Sbjct: 412 GKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y ++ K+ E + K I+R+KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSIARYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPEHRSMLQVTLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNTHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis] gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 627 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus duerdenii ATCC BAA-1640] Length = 637 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 388/649 (59%), Gaps = 24/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I++L GLEPVR+RPGMYIG T K LHHL EV+DN++DE + G + IEV++ Sbjct: 7 YGAGDIQVLTGLEPVRLRPGMYIGSTGPKGLHHLIYEVVDNSIDEALQGMCDTIEVTILK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G ++V DNG GIPVE HP+ KST+E +LT LHAGGKF Y++SGGLHGVG+SVVN Sbjct: 67 DGSVSVSDNGSGIPVEKHPQ-TGKSTVETVLTILHAGGKFKEGAYKVSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGF 222 ALS +L V R ++ Q+FSRG+P + LE E + GT I F PDP+IF F Sbjct: 126 ALSTKLVAEVKRNKKLYRQEFSRGVPQTELEVVEDLKEDVTGTTIIFHPDPEIFET-VEF 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ VK ++ ++ + +E F++ GG+K++++ ++ Sbjct: 185 EFEVLEKRFREMAFLNKNVKIIFTDER-------VDRQEIFHYEGGIKSFVEYINRKKTK 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I ++ + + T VE AI + + E ++ N I T+EGGTH SG R ++TR Sbjct: 238 IHKDVIYFEELAENTQ---VEVAIQYTDSYSENVLTFANNINTEEGGTHLSGFRASVTRT 294 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I Y ++ ++ DD+ I+SV I P+F GQTK+KL + + + V+ Sbjct: 295 INDYGRKYNIIKEKEENLSGDDVREGMTAIISVKIPNPQFEGQTKSKLGNSETRGIVDGV 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + YL +NP A +L+ ++ R RK R+ +++ + + LPGKL DC + Sbjct: 355 VSNGLTAYLEENPKVAKIILDKALQARRAREAARKARDLTRKRSILDSMTLPGKLKDCHE 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + E+F+VEGDSAGG+AK R+ + QAVLPLRGKI+NV A +KI N+ +I ++ Sbjct: 415 SDISVNEIFLVEGDSAGGTAKDGRDSNIQAVLPLRGKIMNVEKARLDKILNSDEIKAMIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G ++ +LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE H+++ PP Sbjct: 475 AFGTGIDKEFDINNLRYGKIIIMTDADVDGAHIMTLLLTFFFRHMKPLIEHGHIYVAKPP 534 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+ + +G K + Y +D+E + L E + +I+R+KGLGEM A QL ET M+ + Sbjct: 535 LYGVKRGEKVIRYCYDDEELESALNELGRD--KNYKIARYKGLGEMNAEQLWETTMNPDS 592 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 R LLRV I L D D + LMG + R +FI+E A + +++ Sbjct: 593 RILLRVNIEDVL----DADDVFSTLMGVDVEPRREFIEENAKYAENIDA 637 >gi|49475554|ref|YP_033595.1| DNA topoisomerase IV subunit B [Bartonella henselae str. Houston-1] gi|49238360|emb|CAF27584.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1] Length = 685 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 426/688 (61%), Positives = 524/688 (76%), Gaps = 7/688 (1%) Query: 1 MTDDSIDLFSTLPPQSQGS--SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M+D + DLFS L EK ++ + ++Y+A SIR+LEGLEPV Sbjct: 1 MSDKNKDLFSILNNAQFSINIKEKNLSPSLSSEAANSRKDTQENDYNALSIRVLEGLEPV 60 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+ I+VSL+ NG+LTV DNGRGIPV Sbjct: 61 RLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADFIDVSLEKNGYLTVTDNGRGIPV 120 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 ENHP+ P KSTLE+I+T LH+GGKFD Y+ +GGLHGVGISVVNALSD + V VAR+ Sbjct: 121 ENHPQMPGKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDYMEVEVARERK 180 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 ++ Q+FSRGIP S LE V N+RGTR+ F PD KIFG+KA FD ++ KM +SKAYL Sbjct: 181 LYRQRFSRGIPQSGLEDLGDVYNRRGTRVRFHPDSKIFGEKAAFDPEKIYKMARSKAYLF 240 Query: 239 GRVKTCWSCDKEIAEKY-GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 G VK W+CD + E IPEK F+FP GLK YL + L++ ++SEIF+GKT K Sbjct: 241 GGVKIRWNCDPVLLENTKNIPEKAVFHFPDGLKDYLLSSLKDEYRVTSEIFSGKT-KHSN 299 Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 G+VEWAIAW + + SYCNTI T EGGTHE GLR AL RG+K YAEL NKRA I Sbjct: 300 GHGSVEWAIAWHGGDSHVQSYCNTIPTGEGGTHEMGLRQALLRGLKSYAELIGNKRAAII 359 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 SDD+MIS ILSVFI++PEF GQTK +L +++AQR VENA+RDPFDH+L +P E+TK Sbjct: 360 TSDDVMISTSAILSVFIKDPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTNSPQESTK 419 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WV+ER+EER+RRR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVEGDSAGGS Sbjct: 420 LLDWVVERAEERVRRRQDREINRKTAVRKLRLPGKLADCSQNCAAGAELFIVEGDSAGGS 479 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQARNR+NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE+DLRYE+ Sbjct: 480 AKQARNRANQAILPLRGKILNVASAAHEKMNSSQTIGDLILALGCGTRSKYREKDLRYER 539 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K YA D+ HK Sbjct: 540 IIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAYARDDTHK 599 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++L+ + GK KIEI RFKGLGEM A QLKET M KRTLLRV IN +++T++ Sbjct: 600 DELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSIN--AEEVQETKN 656 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 ++ LMGTK + RF+FIQE ++F ++ Sbjct: 657 TVESLMGTKPEARFRFIQENSTFASNLD 684 >gi|289433379|ref|YP_003463251.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 646 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y+ I++LEGLE VR RPGMYIG T ++ LHHL E++DNA+DE +AG+ Sbjct: 7 TNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQRGLHHLVWEIVDNAIDEALAGFC 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE++++ + +TV DNGRGIP + K + T+E+I T LHAGGKF Y++SGGL Sbjct: 67 TEIEITIEADNSITVRDNGRGIPTGINEKI-GRPTVEVIFTVLHAGGKFGGGGYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V R+ + Q+F RG + +E++ + + RGT + F PDP+ Sbjct: 126 HGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVHFTPDPQ 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD L T+ A+L+ + +E + +++F++ GG+++Y++ Sbjct: 185 IFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHK-----VRKDFHYEGGIRSYVE 239 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 + + +I + E+ VE ++ + + N I T EGGTHESG Sbjct: 240 HLNKAKDVIHEPPIYLEGERDDIM---VEISMQYNTGFSSNIISFANNIHTYEGGTHESG 296 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA + ++ +D+ I+S+ +P+F GQTKTKL + + Sbjct: 297 FKTALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSE 356 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ + + + ++++NP A K++E V+ +R + + + + LP Sbjct: 357 ARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLP 416 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N Sbjct: 417 GKLADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILAN 476 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I + A+G + RY K+IIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 477 EEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAG 536 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++I G + Y + + + L K K I R+KGLGEM QL + Sbjct: 537 YIYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKD--TKYGIQRYKGLGEMNPEQLWD 594 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTLL+V I + D ++ LMG + + R KFI+E A ++ ++ Sbjct: 595 TTMNPEHRTLLQVNIKDAI----DADETFEMLMGDRVEPRRKFIEENAQYVKNLD 645 >gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi] Length = 627 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSETFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis] Length = 627 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYANHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|255283818|ref|ZP_05348373.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469] gi|255265701|gb|EET58906.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469] Length = 641 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 384/652 (58%), Gaps = 18/652 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + + Sbjct: 3 TEVNQEYGADQIQILEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTV 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V+++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGV Sbjct: 63 DVTINEDNSITVIDNGRGIPVGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS+ L V + + I+ Q++ RG + L+ + K GT+I+F PD +IF Sbjct: 122 GASVVNALSEWLEVNIYHEGKIYFQRYERGHVMDKLKVTGECEPGKTGTKISFLPDKEIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + + A+L+ VK +E P + F++ GG++ ++ Sbjct: 182 EETV-FDFNTLKQRLREMAFLTKNVKIILRDKREE-----EPVERVFHYEGGIREFVTYL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + ++ + +I + + + VE A+ + S+ N I T EGGTH +G + Sbjct: 236 NKGKTPLYQDIIYCEGTRDNIY---VEVAMQHNDSYTEGSYSFVNNITTPEGGTHLTGFK 292 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALT+ YA+ + K S+ +D+ I+S+ I +P+F GQTK KL + +A+ Sbjct: 293 NALTKTFNAYAKANKLIKDTESLSGEDIREGMTAIVSIKIEDPQFEGQTKQKLGNSEARG 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V++ + + YL Q+P A +L+ ++ + R+ + RK+A+ L LPGKL Sbjct: 353 AVDSVVSEQLMIYLEQHPQAAKLILDKSIMAQRAREAARKARDLTRRKSALDGLSLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAK+AR+R+ QA+LPLRGKILNV A ++I N +I Sbjct: 413 ADCSDKNPANCEIYIVEGDSAGGSAKEARSRATQAILPLRGKILNVEKARLDRIYANAEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++ Sbjct: 473 KAMITAFGTGIHDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVY 532 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+++ + K YA+ ++ IL+E + K I R+KGLGEM A QL ET M Sbjct: 533 LAQPPLYKLERNKKVWYAYSDDELDAILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTM 590 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D KR LLRV +++ + + + LMG + + R +FI+E A + ++ Sbjct: 591 DPQKRVLLRVTMDE--ETSSELDLTFTTLMGDQVEPRREFIEENAVYAQNLD 640 >gi|194476918|ref|YP_002049097.1| DNA topoisomerase IV subunit B [Paulinella chromatophora] gi|171191925|gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella chromatophora] Length = 652 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 262/656 (39%), Positives = 379/656 (57%), Gaps = 15/656 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +Y A I++LEGL PVR RPGMYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 4 SSKVQADYGAEQIQVLEGLAPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGHCDE 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I VSL +G T+ DNGRGIP + HP KS LE +LT LHAGGKF +Y++SGGLHG Sbjct: 64 ILVSLSEDGSATISDNGRGIPTDIHP-HTGKSALETVLTVLHAGGKFGGDSYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+ L VTV R++ + Q+F RG+P+ L + N+ GT +TF+PD KIF Sbjct: 123 VGVSVVNALSEWLEVTVYRKSQLHHQRFERGVPIGLLTAQPGEENRTGTSLTFKPDTKIF 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQT 275 FD + L + AYL+G V+ + ++ + GI +E + + GG+K Y+ Sbjct: 183 TTSITFDYSTLAGRLRELAYLNGGVRISFRDERISSGGENGIAYEEVYCYKGGIKEYVAY 242 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 + + + SEI + K G + + I + N I T +GGTH GL+ Sbjct: 243 INKEKDPLHSEIIYVNSHKDGV-QVEAALQWCVDTYSDSILGFANNIRTVDGGTHIEGLK 301 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LTR + +A+ ++ ++ +++ +LSV + +PEF GQTKTKL + + + Sbjct: 302 TVLTRTLNSFAKKRGKRKDSDNNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVR 361 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V++ + + YL NP +LE I+ R+ RE V RK+ + LPGK Sbjct: 362 GIVDSLVGEALTQYLEFNPSVIELILEKAIQAFNAAEAARRARELVRRKSILESSTLPGK 421 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N + Sbjct: 422 LADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTE 481 Query: 513 IMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ ALG + + +E LRY +++IMTDADVDGAHI +LLLTFFY+ L+E + Sbjct: 482 IQALITALGLGIKGEEFDEKSLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLLEGGY 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++ +G Y +DE L+ F++ K I RFKGLGEM+ QL T Sbjct: 542 IYIACPPLYKVERGKNHTYCYDENDLSTTLKRFRE--KSNYSIQRFKGLGEMMPKQLWST 599 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 MD R + RVEI L + LMG K R +FI+ ++ ++ ++ Sbjct: 600 TMDPQSRMMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSADLNLAELD 651 >gi|126662002|ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38] gi|126625381|gb|EAZ96070.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38] Length = 646 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 262/661 (39%), Positives = 388/661 (58%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ +Y A SI+ LEG+E VRMRP MYIG T + LHHL EV+DN++DE +AG+ Sbjct: 1 MSEENKKGSYSADSIQALEGMEHVRMRPSMYIGDTGVRGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + +TV DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTIYVAINEDNSITVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALSD L TV R+ ++ Q++ RG + P+++ RGT +TF+PD Sbjct: 120 HGVGVSCVNALSDHLRATVYREGKVYEQEYERGKAMYPVKQIGTTEK-RGTMVTFKPDAT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + ++L+ + + + +AE P E F+ GLK +++ Sbjct: 179 IFTQTLEYSYDTLASRLRELSFLNKGITITLTDKRHLAEDGSQP-VETFHSKEGLKEFVK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR I S + + + EK VE A+ + I SY N I T EGGTH G Sbjct: 238 FLDGNREPIISHVISMEHEKSEIP---VEVALIYNTSYTENIFSYVNNINTHEGGTHLQG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R+ LTR +KKYA+ + K I DD I+SV ++EP+F GQTKTKL + + Sbjct: 295 FRMGLTRTLKKYADSSGLLDKLKFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + ++YL +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VVSPVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSEQDPAKCEIFLVEGDSAGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG + E LRY KV+IM DADVDG+HI++L+LTFF++ M + Sbjct: 475 EEIRNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE+ H+++ +PPL+ + +G K YA ++ + E G I R+KGLGEM A Sbjct: 535 LIEKGHVYIAAPPLYLVKKGNKKEYAWNDVQRDVANERMG----GSAAIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T ++ RT +V I+ SL + + LMG + R +FI++ AS+ + Sbjct: 591 EQLWDTTLNPENRTFRQVTID----SLAEADRVFSMLMGDEVPPRREFIEKNASYAK-ID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|78183717|ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC9902] gi|78168011|gb|ABB25108.1| DNA gyrase subunit B [Synechococcus sp. CC9902] Length = 655 Score = 625 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 262/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ + Sbjct: 4 ASKVQNEYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHG Sbjct: 64 ITVILGADGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDP 213 VG+SVVNALS+ + VTV RQ + Q+F RG + + E + + GT + F PD Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGTLLSESQPEAEQGETGTTVCFLPDT 182 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272 +IF FD A L + AYL+G V+ + ++E + G P +E +++ GG+K Y Sbjct: 183 QIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDERESSLSDAGDPHEEIYFYEGGIKEY 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + + +I +EK G + + I + N I T +GGTH Sbjct: 243 VAYMNKAKDALHPDIIYVNSEKDGV-QVEAALQWCADAYSDSILGFANNIRTVDGGTHIE 301 Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V+N + + +L NP + +LE I+ R+ RE V RK+ + L Sbjct: 362 EVRGIVDNLVGESLSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYK 481 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + ++ LRY +V+IMTDADVDGAHI +L+LTFFY+ +L+E Sbjct: 482 NTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVE 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E QK L+ F ++ K I RFKGLGEM+ QL Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGEN--AKYTIQRFKGLGEMMPKQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD + R + R+EI L + LMG K R +FI+ + +D Sbjct: 600 WETTMDPSTRMMKRIEIEDAL----EADRIFTILMGDKVAPRREFIETHSKELD 649 >gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKAIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis] Length = 627 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQ+ A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQKNAKY 627 >gi|298207945|ref|YP_003716124.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559] gi|83850586|gb|EAP88454.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559] Length = 645 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 385/658 (58%), Gaps = 24/658 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ + Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY + Sbjct: 2 SEESKKQYSADSIQALEGMEHVRMRPSMYIGDVGIRGLHHLVYEVVDNSIDEAMGGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +T DNGRGIP+ H K S LE+++T + AGGKFD +Y++SGGLHG Sbjct: 62 IDVIINEDNSITTKDNGRGIPIGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALSD L +V + I+ Q++ RG PL P++ + GT +TF PD +IF Sbjct: 121 VGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFSGTVVTFHPDNQIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L + A+L+ + + ++ +K E F+ GL +++ Sbjct: 180 QQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKG-EFISERFFSEEGLSEFVRFL 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 NR I ++ + + EK G VE A+ + + SY N I T EGGTH +G R Sbjct: 239 DGNRDPIIKDVISMEGEKNGVP---VEVAMIYNSSYAENLHSYVNNINTHEGGTHLAGFR 295 Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LT +KK+A+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 296 RGLTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVT 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V A+ + + ++ +NP +A ++E VI ++ R +K RE+ RKT + LPGK Sbjct: 356 SAVSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQRKTVMSIGGLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A S K+ N++ Sbjct: 416 LSDCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMSHKVFENEE 475 Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I ++ ALG ++ + LRY K++IM DADVDG+HIA+L+LTFF++ M +LI Sbjct: 476 IKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 E H+++ +PPL+ I +G K YA +E+ ++ I EF KG + + R+KGLGEM A Q Sbjct: 536 EAGHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEF----KGSVSVQRYKGLGEMNAEQ 591 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L +T M+ RTL +V I+ + + + LMG R +FI++ A + ++ Sbjct: 592 LWDTTMNPEFRTLRQVAIDNGV----EADRIFSMLMGDDVPPRREFIEKNAKYA-NID 644 >gi|225010581|ref|ZP_03701052.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C] gi|225005410|gb|EEG43361.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C] Length = 646 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 257/661 (38%), Positives = 383/661 (57%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSEELEKKNYSADSIQALEGMEHVRMRPSMYIGDVGTRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I + ++ + ++V DNGRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DTITIDINEDNSISVTDNGRGIPVGMHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS +L TV I+ Q++ RG + P+ + +K GT +TF PDP Sbjct: 120 HGVGVSCVNALSVKLQATVYVDGKIWEQEYERGKAVYPVRSIGET-DKSGTTVTFWPDPT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + +YL+ VK + + E+ G E FY GLK +++ Sbjct: 179 IFTQTVEYSYETLSNRMRELSYLNKGVKLTITDKR-QKEEDGSFVSEVFYSDEGLKEFIK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR + + + + EK G VE A+ + E Y N I T EGGTH SG Sbjct: 238 FLDGNREQLIKNVISIEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTTTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + +YL +NP +A +++ V+ ++ R K RE+ RKT + LP Sbjct: 355 VSAAVSQAVSEMLANYLEENPDDAKIIVQKVVLAAQARHAANKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A ++ +N Sbjct: 415 GKLSDCSEQDPSLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHRVFDN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KV+IM DADVDG+HI +L+LTFF++ M + Sbjct: 475 EEIKNIYTALGVSIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LI+ H+++ +PPL+ + +G K YA +++ + I EEF G + I R+KGLGEM A Sbjct: 535 LIDGGHVYIATPPLYLVKKGAKKRYAWNDKERDAIAEEF----NGSVSIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL ++ I+ +T + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMNPEFRTLRQITIDNAT----ETDRTFSMLMGDEVPPRKEFIEKNAVYA-NID 645 Query: 686 T 686 Sbjct: 646 A 646 >gi|260437693|ref|ZP_05791509.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] gi|292809919|gb|EFF69124.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] Length = 638 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 259/647 (40%), Positives = 377/647 (58%), Gaps = 20/647 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I V ++ Sbjct: 6 YTADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSVDEALAGFCTEIFVQINE 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 66 DNSITVIDNGRGIPVGINAK-SGLPGVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222 ALS+ L V V + I+ Q++ RG + PL+ K GT + F PD +IF D + Sbjct: 125 ALSEWLEVKVFQNGNIYEQRYERGKVMYPLKIVGSCDMEKTGTEVHFLPDKEIFEDTV-Y 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + + A+L+ ++ D+E ++ + F++ GG+K Y++ + Sbjct: 184 DYNVLKQRLREMAFLTKNLRITLKDDREDKKE------KVFHYEGGIKEYVEYLNKGNQA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + EI + K G VE A + + + N I T EGGTH +G R A+T+ Sbjct: 238 LYDEIIYCEGNKNGV---NVEVAFQHNDGYSDNVYGFVNNITTPEGGTHVTGFRNAVTKT 294 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 YA + ++ S+ +D+ I+S+ I +P+F GQTK KL + +A+ VE+ Sbjct: 295 FNDYARSNKILKEKDPSLSGEDIREGLTAIISIKIADPQFEGQTKQKLGNSEARGAVESV 354 Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 + + ++L QNP A + E V+ + R+ + RKTA+ LPGKLADCS Sbjct: 355 VTEQLTYFLEQNPSVAKTICEKSVLAQRAREAARKARDLTRRKTALDGFNLPGKLADCSD 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + E+FIVEGDSAGGSAK AR R QA+LPLRGKILNV A ++I N +I ++ Sbjct: 415 KNSENCEIFIVEGDSAGGSAKSARKRETQAILPLRGKILNVEKARLDRILGNAEIRTMIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+IIMTDADVDGAHI++LLLTFFY+ M DLI++ H++L PP Sbjct: 475 AFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLLLTFFYRFMPDLIKKGHVYLAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + K YA+ +E IL E + K I R+KGLGEM ASQL ET MD R Sbjct: 535 LYKLEKNKKVWYAYSDEELSAILAEVGRDQNNK--IQRYKGLGEMDASQLWETTMDPEHR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L +V +++++S + + + LMG K + R +FI+ A ++ ++ Sbjct: 593 ILKKVYFDEEISS--EIDLTFSTLMGDKVEPRREFIETNAKYVKNLD 637 >gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 627 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K + +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKRGHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|220908378|ref|YP_002483689.1| DNA gyrase subunit B [Cyanothece sp. PCC 7425] gi|219864989|gb|ACL45328.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7425] Length = 645 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 256/651 (39%), Positives = 366/651 (56%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY I V Sbjct: 2 TTNYSADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCKNILVE 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ +G +TV D+GRGIP + K KS LE +LT LHAGGKF Y++SGGLHGVG+S Sbjct: 62 LNPDGSVTVTDDGRGIPTDIVSK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R +F+Q+F RG+P + L+ + N+ GT I F PD +IF + Sbjct: 121 VVNALSSWLEAKVWRDGKVFTQRFERGLPATDLKAQPSGGNRTGTAIQFMPDAEIFTETI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK + + K P E +++ GG+K Y+ ++ Sbjct: 181 EFDYKTLSGRLRELAYLNAGVKIEFRDGRLDLLKRDEPLLETYFYEGGIKEYVSYMNVDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 EPLHQEIIYVQGERNDV-QVEVALQWCTDAYTDNLLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +A + ++ +++ ++SV + EPEF GQTKTKL + + + V++ Sbjct: 300 TLNNFARKRNKLKEGDPNLAGENVREGMTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL P +LE I+ R+ RE V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLDFRPAVVDSILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPREAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + +LRY K+I MTDADVDGAHI +LLLTFFY+ L++Q ++++ Sbjct: 480 TALGLGIKGEEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I +G Y +++ + +I+ ++ + EI RFKGLGEM+ QL +T M+ Sbjct: 540 PPLYKIERGRNHYYCYNDRERDQIIAGLGENAR--YEIQRFKGLGEMMPQQLWDTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RTL +V I + N LMG + R +FI+ + D+ Sbjct: 598 TRTLKQVTIED----AAEADRIFNILMGDRVAPRREFIETYGPRLNLADLD 644 >gi|194335198|ref|YP_002016992.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307675|gb|ACF42375.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 649 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 260/666 (39%), Positives = 375/666 (56%), Gaps = 25/666 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + D + +Y A++I++L+G+E VRMRP MYIG + LHHL E++DN++ Sbjct: 1 MQEDDILSLPTPPTEASYGATNIQVLDGIEHVRMRPAMYIGDIYSRGLHHLVYEIVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE + G+ + I VSL+ +G +TV+D+GRGIPV+ HP+ KS LE+++T + AGGKFD Sbjct: 61 DETLGGFNDYIFVSLNPDGSVTVIDHGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKG 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG SVVNALS+ V V+R ++ Q+F RG+P ++ + RGT+ Sbjct: 120 AYKVSGGLHGVGASVVNALSEWCEVEVSRDGKLYFQRFERGVPQGDVKVIG-SSDHRGTK 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 TF PD IF ++ + A+L+ + +E F++ Sbjct: 179 TTFLPDHLIFKT-TELRKDIIIDRMRELAFLNKELSITVQD--------TEGFQEIFHYE 229 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+K ++Q +NR + E E+ T VE A+ + + + SY N I T Sbjct: 230 GGIKEFVQFTDQNRLNLLKEPIYLYGERDSTI---VEIALQYNDTYQENVFSYVNNINTH 286 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R ALTR + YA+ + + + DD ++SV + EP+F GQT Sbjct: 287 EGGTHVTGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQT 346 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL + + Q VE + + + NP ++E V + R R+ +E RK+ Sbjct: 347 KTKLGNSETQSIVETVINEQLSEFAESNPNVLKMIIEKVKGAAMSREAARRAKELTRRKS 406 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A Sbjct: 407 VLESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKA 466 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 K+ N++I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ Sbjct: 467 RLHKMLENEEIKTIILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFR 526 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKG 619 M LIE +F+ PPL+ + G YA D+E + I + KK GK I I R+KG Sbjct: 527 YMRALIEAGRVFIAQPPLYLVKSGKDQQYAWDDEERNSISDGMKKMQKGKANIHIQRYKG 586 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL T MD R+LL V + + + + LMG K + R +FI++ A Sbjct: 587 LGEMNPEQLWSTTMDPAHRSLLLVNVENAM----EADQVFSTLMGDKVEPRREFIEKNAR 642 Query: 680 FIDDVG 685 ++ + Sbjct: 643 YVRRLD 648 >gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] Length = 639 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 274/646 (42%), Positives = 393/646 (60%), Gaps = 22/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA I++LEGLE VR RPGMY+GGT + LHHL EV+DN++DE +AGY + IEV ++ Sbjct: 11 YDADQIQVLEGLEAVRKRPGMYVGGTGARGLHHLVYEVVDNSIDEALAGYCDNIEVIIEP 70 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +TV+D+GRGIP+ +HP NK +EI++T LHAGGKFDN Y++SGGLHGVG+SVVN Sbjct: 71 GNVVTVIDDGRGIPISSHPNL-NKPAVEIVMTVLHAGGKFDNEGYKVSGGLHGVGVSVVN 129 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V V R N I+ Q++ G+P+ L + + GT I F+PD +IF F+ Sbjct: 130 ALSEWLEVEVMRDNKIYHQRYEEGVPVKDLTVIGESQ-ASGTMIKFKPDLEIFESI-DFE 187 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 +L+K + AYL+ +K + K + F + GG+ +++Q EN+ I Sbjct: 188 YKKLIKRLKELAYLNKGIKIEIKDKRRDEIKT-----DIFQYDGGIVSFVQELNENKDPI 242 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E +TE++ H +E AI + E I ++ N I T EGG H SG + ALTR I Sbjct: 243 HEEPIYFETEEEDNH---IEVAIQYNETYVDNIFTFANNINTHEGGNHLSGFKSALTRTI 299 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA + ++ DD+ V I++V + +P+F GQTKTKL + + + V++ + Sbjct: 300 NDYARRHDYLKEDDSNLSGDDIREGIVAIVNVKLPDPQFEGQTKTKLANSEVRGIVDSVV 359 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + D +L ++P + +++ I+ +E R +K RE RK+A+ LPGKLADCS Sbjct: 360 SENLDRFLEEDPEIGSIIVQKAIKAAEARKAAKKARELTRRKSALTSTALPGKLADCSSR 419 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILNV A KI NN +I L+ A Sbjct: 420 DPEESELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLNKILNNNEIRSLITA 479 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG ++ E RY+K+IIMTDADVDGAHI +LLLTFFY+ M L+E ++++ PPL Sbjct: 480 LGTGIGKEFDMEQARYKKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEAGNIYIAQPPL 539 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ +G K Y +++ +++L E G+ I I R+KGLGEM QL ET MD RT Sbjct: 540 YKVNKGRKEYYVYNDRKLEELLNEI---GRSGISIQRYKGLGEMNPKQLWETTMDPENRT 596 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V+I + D LMG K R KFIQ+ A + ++ Sbjct: 597 TLQVQIEDAVM----ADDIFTTLMGDKVAPRRKFIQKHAKEVKEID 638 >gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515] gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515] Length = 655 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 263/657 (40%), Positives = 387/657 (58%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEEKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G ++ DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDQIEIVLKDDGSASISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209 GGLHGVGISVVNALS+ ++VTV R+ + F+Q+F RGI L+ ++ ++GT I F Sbjct: 121 GGLHGVGISVVNALSEWVNVTVFREGSEFTQRFERGITKGELKTQKQQNKSLRKGTIICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF D FD A L + AYL+G VK + +++ E E + + GG+ Sbjct: 181 KPDTTIFTDGIEFDYALLSSRLRELAYLNGGVKIIFIDERQKLPDGSFKE-EIYLYDGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y+Q + + I SEI ++K + + I + N I T +GGT Sbjct: 240 KEYVQYINKEKESIHSEIIYVDSQKDNVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ + ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ ++ R+ V RK+ + Sbjct: 359 GNTEVRGIVDSLIGESLTKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS G+E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSGSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E +K +E+F + K I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHKYCYNEGQLKKTIEDFGE--KANYNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + +VEI L + N LMG K R +FI+ ++ +D Sbjct: 597 KQLWDTTMNPETRMMKKVEIEDAL----EADRIFNILMGDKVAPRREFIETHSANLD 649 >gi|295094327|emb|CBK83418.1| DNA gyrase subunit B [Coprococcus sp. ART55/1] Length = 639 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 378/649 (58%), Gaps = 19/649 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNY A I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY I+V + Sbjct: 4 DNYGAEQIQVLEGLEAVRKRPGMYIGSTSSTGLHHLVYEIVDNSVDEALAGYCTHIQVYI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TVVD+GRGIPV H K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 64 NEDNSITVVDDGRGIPVGIHKKQ-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA 220 VNALS L V + R ++ Q++ +G + L+ + GT++TF PD IF D Sbjct: 123 VNALSTWLEVEITRDGKVYKQRYEKGKVMYKLQVIGEAPEGVSGTKVTFLPDHTIFEDNI 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K + + I EK F++ GG+K ++ +R Sbjct: 183 -YDYDILRNRLREMAFLTKGLKISLTDKRLIPEKVRS-----FHYEGGIKEFVTYLNRHR 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + +E+ + + G +VE A+ + S+ N I T EGGTH +G + A+T Sbjct: 237 DPLYNEVIYCEGVRDGI---SVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAIT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA ++ ++ DDL I+S+ I +P+F GQTK KL + +A+ VE Sbjct: 294 KVFNDYARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVE 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADC 456 + + + +YL QNP A ++ R+ RK R+V RK + PGKLADC Sbjct: 354 SVVTEQLTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I N++I + Sbjct: 414 SDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIKAM 473 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L Sbjct: 474 ITAFGTGIHENFNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQ 533 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + K YA+ ++ IL+E + K I R+KGLGEM A QL ET MD Sbjct: 534 PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 591 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LLRV I+ D S D + N LMG K + R +FI+ A ++ ++ Sbjct: 592 KRILLRVAIDDDDESEIDM--TFNVLMGDKVEPRREFIETNAKYVKNLD 638 >gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 627 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTALHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis] Length = 627 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 265/644 (41%), Positives = 380/644 (59%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADEAFEILMGDKVEPRRNFIQENAKY 627 >gi|116071704|ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107] gi|116065327|gb|EAU71085.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107] Length = 655 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 262/654 (40%), Positives = 378/654 (57%), Gaps = 16/654 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ + Sbjct: 4 ASKVQNEYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHG Sbjct: 64 ITVILGADGSASVTDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRPDP 213 VG+SVVNALS+ + VTV RQ + Q+F RG + + E + + GT + F PD Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLLSESQSEAEQGETGTTVCFLPDL 182 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272 +IF FD A L + AYL+G V+ + ++E + G P +E +++ GG+K Y Sbjct: 183 QIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDEREASLSDAGDPHEEIYFYEGGIKEY 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + + +I +EK G + + I + N I T +GGTH Sbjct: 243 VAYMNKAKDALHPDIIYVNSEKDGV-QVEAALQWCADAYSDSILGFANNIRTVDGGTHIE 301 Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKDADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V+N + + +L NP + +LE I+ R+ RE V RK+ + L Sbjct: 362 EVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKIYK 481 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + ++ LRY +V+IMTDADVDGAHI +L+LTFFY+ +L+E Sbjct: 482 NTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKRELVE 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E QK L+ F ++ K I RFKGLGEM+ QL Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGEN--AKYTIQRFKGLGEMMPKQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD + R + R+EI L + LMG K R +FI+ + +D Sbjct: 600 WETTMDPSTRMMKRIEIEDAL----EADRIFTILMGDKVAPRREFIETHSKELD 649 >gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14] Length = 644 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 258/647 (39%), Positives = 374/647 (57%), Gaps = 18/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I+V ++ Sbjct: 11 EYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDKIQVDIN 70 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 71 KDNSITVTDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V +A + I+ Q++ RG L RGT++TF PD +IF + Sbjct: 130 NALSEWLEVEIANEGKIYKQRYERGKVCYKLRVDRDCEPEMRGTKVTFLPDKEIFEETV- 188 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + + A+L+ +K +E I F++ GG+K ++ ++++ Sbjct: 189 FDYNTLKQRFREMAFLTKGLKIHLRDLREEEIHEHI-----FHYEGGIKEFVTYLNKSKT 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +I + K VE A+ + + N I T EGGTH +G R ALT+ Sbjct: 244 ALYEQIIYCEGMKDNV---AVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTK 300 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 Y + + K + +D+ I+SV I +P+F GQTK KL + +A+ V+N Sbjct: 301 VFNDYGKKNKLLKENEQLSGEDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVDNI 360 Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +R + +L QNP A ++E V+ + R+ + RK+A+ + LPGKLADCS Sbjct: 361 VRTQLEIFLEQNPSVAKMIIEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSD 420 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I ++ Sbjct: 421 KDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 480 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L PP Sbjct: 481 AFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPP 540 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + K YA+ ++ +IL E + K I R+KGLGEM A QL ET MD R Sbjct: 541 LYKLEKNKKVWYAYSDDELNQILTEVGRDSNNK--IQRYKGLGEMDAEQLWETTMDPEHR 598 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV ++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 599 ILLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643 >gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23] gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23] Length = 652 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 383/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + IEV ++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCDHIEVIIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDNTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKGEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV ++EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG + + LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + I R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ T Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDT 652 >gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106] gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106] Length = 645 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 369/651 (56%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G +TV D+GRGIPV+ H K KS LE ++T LHAGGKF Y++SGGLHGVG+S Sbjct: 62 FNADGSVTVTDDGRGIPVDVHSK-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + V V R T ++Q++ RG+P+ L+ K + GT + F PD IF Sbjct: 121 VVNALSEWVEVQVLRDETQYTQRYQRGVPVDELQSKPSQGKQTGTSVQFLPDTTIFTTGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD A + + AYL+ V+ + ++ + + E F + GG++ Y+ + Sbjct: 181 EFDYATIANRLRELAYLNAGVRITLTDNRLDLIQLEEAKTESFCYEGGIREYIAYMNREK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ E+ + V + I + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEDVIYVSGERNNV-QIEVALQWCVDAYSDNILGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +A + ++ +++ ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TMNNFARKRNKLKENESNLGGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +LE I+ + R+ R+ V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLDFHPHIADAVLEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 I +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 TRIPAESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQSLI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG R + + LRY K+IIMTDADVDGAHI +LLLTFFY+ +L+EQ +++ Sbjct: 480 TALGLGIRGEDFDSSQLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQRELVEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y +++ Q+ L EF + I RFKGLGEM+ QL T M+ Sbjct: 540 PPLYKVERGRNHYYCYNDRELQERLAEFPSNAN--YNIQRFKGLGEMMPEQLWNTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R + +VE+ + LMG + R +FI+ A ++ D+ Sbjct: 598 TRMIKQVEVED----AAQADNVFTVLMGDRVAPRREFIETNAPRLNLVDLD 644 >gi|291513912|emb|CBK63122.1| DNA gyrase subunit B [Alistipes shahii WAL 8301] Length = 652 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 267/667 (40%), Positives = 384/667 (57%), Gaps = 27/667 (4%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + + Y AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE + Sbjct: 2 STELENVKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY I+V+++ + +TV DNGRGIP + H K KS LE++LT LHAGGKFD +Y++ Sbjct: 62 AGYCTDIDVTINEDNSITVRDNGRGIPTDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 SGGLHGVG+S VNALS L + R I+ Q +S+G P S +E + + RGT ITF Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHSRDGKIYRQTYSKGAPTSQVEVVGECTD-RGTIITF 179 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF + L + A+L+ + + ++ G ++ FY GL Sbjct: 180 KPDGSIFTHTTEYKYDILANRLRELAFLNKGISLNLYDKR--PDEEGKTREDHFYSEEGL 237 Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327 K +++ R + I +I TEK G VE A+ + + E SY N I T EG Sbjct: 238 KEFVKYLDATRGTPIVEQIIYLDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH +G R ALTR +KKYAE + K I DD ++SV ++EP+F GQTKT Sbjct: 295 GTHLTGFRRALTRTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKT 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAI 444 KL + + V+ AL YL +NP +A +++ VI + R + V RKT + Sbjct: 355 KLGNDEVAAAVDQALASALGDYLEENPKDAKAIVQKVILAATARHAARHARELVQRKTVL 414 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS E+F VEGDSAGG+AK R+R+ QA++PLRGKILN+ A Sbjct: 415 SGAGLPGKLADCSSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQE 474 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFF 559 ++ N++I ++ ALG ++ E LRY+K+IIMTDADVDG+HIA+L+LTFF Sbjct: 475 HRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 +++M +LIE H+++ +PPL+ + +G + Y E+ + +I EF K + I R+KG Sbjct: 535 FRKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDEISAEFGK----GVHIQRYKG 590 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A QL ET M+ + R L +V I + + + LMG + R +FI+ A Sbjct: 591 LGEMNAHQLWETTMNPDTRILRQVNIE----NAAEADRIFSMLMGDEVPPRREFIERNAH 646 Query: 680 FIDDVGT 686 + ++ Sbjct: 647 YA-NIDA 652 >gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121] Length = 644 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+ I V+++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YADEINVTIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS++L V V R +TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + ++ L + + A+L+ ++ + +++ + ++ +Y+ GG+K+Y Sbjct: 181 SSIFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDI----RQDSYYYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VEMLNENKEPIHGEPIYIHQSKDDI---EVEIAIQYNKGYSTNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L +NP ++E I S R+ +K RE RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K R+ S QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRSMLQVTLEDAI----DADQTFEMLMGDIVENRRQFIEDNAVYA-NLD 643 >gi|331083523|ref|ZP_08332635.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA] gi|330404216|gb|EGG83764.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA] Length = 641 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 263/654 (40%), Positives = 377/654 (57%), Gaps = 20/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + Sbjct: 2 STEIKTEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V+++ + +TV+DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHG Sbjct: 62 IDVAINEDNSITVIDNGRGIPVGINQKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VG SVVNALS L VT+ + I+ Q++ RG + L+ + K GT +TF PDP+I Sbjct: 121 VGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDPEI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ +K +E EK F++ GG+K ++Q Sbjct: 181 FEETI-FDFGTLKHRFREIAFLTKGLKIVARDKREEEEKEVT-----FHYEGGIKEFVQY 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + + +I + K G VE A+ + + N I T EGGTH G Sbjct: 235 LNKSNTALYDDILYFEGNKDGVM---VEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGF 291 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALT+ +YA + + ++ +D+ I+SV I +P+F GQTK KL + +A Sbjct: 292 RNALTKTFNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + V+ + + + YL QNP A ++E ++ + R+ + RK+A+ LPG Sbjct: 352 RGAVDGIVSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC E++IVEGDSAGGS K AR+R+ QA+LPLRGKILNV A +KI N Sbjct: 412 KLADCVDKDPSKCEIYIVEGDSAGGSTKTARSRATQAILPLRGKILNVEKARLDKIYANA 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ A G + LRY K+IIMTDADVDGAHIA+LLLTF Y+ M +LI+Q + Sbjct: 472 EIKAMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGY 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++L PPLF+I + K YA+ E+ + IL E G I R+KGLGEM A QL ET Sbjct: 532 VYLAKPPLFKIEKNKKIHYAYTEQEQADILAEIGMDG---CNIQRYKGLGEMDADQLWET 588 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R L+RV +++D S + + LMG K + R +FI+E A + ++ Sbjct: 589 TMDPESRILMRVVMDED--STSELDLTFTTLMGDKVEPRREFIEENAKYAKNLD 640 >gi|114704565|ref|ZP_01437473.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506] gi|114539350|gb|EAU42470.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506] Length = 675 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 400/688 (58%), Positives = 517/688 (75%), Gaps = 17/688 (2%) Query: 1 MTDD--SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M+DD S + +PPQ K ++ P +Y A+ I +LEGLEPV Sbjct: 1 MSDDLFSGNAARKMPPQRTPKPRKAAETDPRPFGG---------DYTAADIEVLEGLEPV 51 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMY+GGTD KALHHLF+EVIDN+MDE AG+AN IEVSLD +GF TV DNGRGIP+ Sbjct: 52 RRRPGMYVGGTDAKALHHLFAEVIDNSMDEATAGHANFIEVSLDTDGFCTVSDNGRGIPI 111 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 + HP+F +KS LEIILTTLHAGGKFD+ YE SGGLHGVG+SVVNALS++L V VAR Sbjct: 112 DPHPRFKDKSALEIILTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSEKLEVEVARNRK 171 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 ++ Q+++RG ++ LE + +N+RGTR+ FRPDP+IFG+ A F+ RL +M +SKAYL Sbjct: 172 LYRQEYARGKAVTELETVGETQNRRGTRVRFRPDPQIFGEHARFEPTRLFRMARSKAYLF 231 Query: 239 GRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 G V+ W CD + + IP +E F+FPGGLK YL + + I+S+IF G+TEK + Sbjct: 232 GGVEIRWQCDPALLGTESPIPARETFHFPGGLKDYLDNSI-GKDRITSQIFAGRTEK-VS 289 Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 G VEWA+AW ++ I SYCNTI T EGGTHE+GLR L RG+K +AEL+ NKRA I Sbjct: 290 GHGAVEWAVAWTPDDGSIRSYCNTIPTPEGGTHENGLRAVLLRGLKAFAELSGNKRASVI 349 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+M +A G+LSVFIREPEF GQTK +L + +AQR VE ++RD FD +L +P +A + Sbjct: 350 TGDDVMSTASGMLSVFIREPEFVGQTKDRLATSEAQRIVEQSIRDSFDIWLASSPQDAAR 409 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 L++WV++R++ERLRRR+++EV+RK+A RKLRLPGKLADCSQ+ A G ELFIVEGDSAGGS Sbjct: 410 LIDWVLDRADERLRRRQEKEVSRKSATRKLRLPGKLADCSQSGAAGAELFIVEGDSAGGS 469 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R QA+LPLRGKILNVASAG EK+ NQQ+ DL+QALGC T S+YR+ DLRYE+ Sbjct: 470 AKQARDRKTQAILPLRGKILNVASAGREKLGANQQLADLIQALGCGTGSKYRDADLRYER 529 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VI+MTDADVDGAHIASLL+TFFY+EM +LI HL+L PPL+++TQG K+ YA D+ H+ Sbjct: 530 VIVMTDADVDGAHIASLLITFFYREMPELIRGGHLYLAVPPLYKLTQGGKTAYARDDRHR 589 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++++E K GKGK+E+SRFKGLGEML QLKET MD KRTLL+V +++ + T Sbjct: 590 ERLVEREFK-GKGKVEVSRFKGLGEMLPGQLKETTMDPKKRTLLQVVMDEAPEAG--TSG 646 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +++ LMG K D RF+FIQER++F+DD+ Sbjct: 647 AVDALMGNKPDLRFRFIQERSAFVDDLD 674 >gi|163814983|ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759] gi|158449666|gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759] Length = 639 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 266/649 (40%), Positives = 376/649 (57%), Gaps = 19/649 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNY A I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY I+V + Sbjct: 4 DNYGAEQIQVLEGLEAVRKRPGMYIGSTSSTGLHHLVYEIVDNSVDEALAGYCTHIQVYI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TVVD+GRGIPV H K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 64 NEDNSITVVDDGRGIPVGIHKKQ-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKA 220 VNALS L V + R I+ Q++ +G + L+ GT++TF PD IF D Sbjct: 123 VNALSTWLEVEITRNGKIYKQRYEKGKVMYKLQVIGDAPEGVSGTKVTFLPDHTIFEDNV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K + + EK F++ GG+K ++ +R Sbjct: 183 -YDYDILRNRLREMAFLTKGLKISLTDKRITPEKVRS-----FHYEGGIKEFVSYLNRHR 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + +E+ + + G +VE A+ + S+ N I T EGGTH +G + A+T Sbjct: 237 DPLYNEVIYCEGMRDGI---SVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAIT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA ++ ++ DDL I+S+ I +P+F GQTK KL + +A+ VE Sbjct: 294 KVFNDYARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVE 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADC 456 + + + +YL QNP A ++ R+ RK R+V RK + PGKLADC Sbjct: 354 SVVTEQLTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E++IVEGDSAGGSAK AR+RS QA+LPLRGKILNV A ++I N++I + Sbjct: 414 SDKDPKNCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIKAM 473 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L Sbjct: 474 ITAFGTGIHENFNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQ 533 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + K YA+ ++ IL+E + K I R+KGLGEM A QL ET MD Sbjct: 534 PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 591 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV I+ D S D + N LMG K + R +FI+ A ++ ++ Sbjct: 592 RRILLRVAIDDDDESEIDM--TFNVLMGDKVEPRREFIETNAKYVKNLD 638 >gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM 17393] gi|189438338|gb|EDV07323.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM 17393] Length = 653 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 259/658 (39%), Positives = 384/658 (58%), Gaps = 22/658 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S S NY A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + IE Sbjct: 8 SNSGNYSAENIQVLEGLEAVRKRPAMYIGDISTKGLHHLVYEVVDNSIDEALAGYCDHIE 67 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHGVG Sbjct: 68 VTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVG 126 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS + V R I+ Q++ G PL P+++ + GTR F PD IF D Sbjct: 127 VSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWPDNTIFTD 185 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L + AYL+ +K + + E+ + E FY GLK +++ Sbjct: 186 TV-YNYEILATRMRELAYLNAGIKITLTDLRVKDEENNA-KMEIFYSEEGLKEFVRYIDS 243 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +R + +++ TEK+GT VE AI + I SY N I T EGGTH +G R A Sbjct: 244 SREHLVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFRRA 300 Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR +KKYA+ + K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 301 LTRTLKKYADDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGA 360 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454 V+ A+ + ++YL ++P EA +++ VI ++ R+ RK RE ++ + + +PGKLA Sbjct: 361 VDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLA 420 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + ++ Sbjct: 421 DCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVN 480 Query: 515 DLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ +I Sbjct: 481 NIIQALGIRFGVNTEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIR 540 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +L++ +PPL+ +G Y ++ +QK ++ + + + R+KGLGEM QL Sbjct: 541 NGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSESAVHTQRYKGLGEMNPEQL 600 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T M+ R L ++ I + + + LMG R +FI++ A++ ++ Sbjct: 601 WSTTMNPENRMLKQISIE----NAAEVDYIFSMLMGEDVGPRREFIEKNATYA-NIDA 653 >gi|218264667|ref|ZP_03478430.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii DSM 18315] gi|218221854|gb|EEC94504.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii DSM 18315] Length = 651 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 385/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AG+ + Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGFCTQV 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + ++V D+GRGIPV+ H K S LE++LT LHAGGKFD +Y++SGGLHGV Sbjct: 66 DVVINEDNSISVTDDGRGIPVDIHEK-EGVSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R I Q+FS G PL +E + + GT I F+PD IF Sbjct: 125 GVSCVNALSTYLKAEVRRDGKIHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPDGSIFS 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F+ GLK +++ Sbjct: 184 VT-EYKYEILATRLRELAFLNAGITLSLTDKRVVKEDG-NYKSEIFHSDEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + N + SY N I T EGGTH +G R Sbjct: 242 RSKEQLIPDVIHIVTEKQGIP---VEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYA+ ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI + R+ + V RK+ + LPGKL Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ +++I Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478 Query: 514 MDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ + LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y ++ +Q ++++ + ++ R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQVHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ S + + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----SAAEADQIFSMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|197302273|ref|ZP_03167332.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC 29176] gi|197298704|gb|EDY33245.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC 29176] Length = 644 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 255/647 (39%), Positives = 373/647 (57%), Gaps = 18/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I V ++ Sbjct: 11 EYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDKIVVDIN 70 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV + K +E++ T LHAGGKF Y++SGGLHGVG SVV Sbjct: 71 KDNSITVTDNGRGIPVGINHKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASVV 129 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V + + I+ Q++ RG L + GT++TF PD +IF + Sbjct: 130 NALSEWLEVEICHEGKIYKQRYERGKVCYKLRIEGDCDPELTGTKVTFLPDKEIFEETV- 188 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + + A+L+ +K +E F++ GG+K ++ ++++ Sbjct: 189 FDYNTLKQRFREMAFLTKGLKIQLRDLREEEVHEHT-----FHYEGGIKEFVTYLNKSKT 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +I + K + VE A+ + + N I T EGGTH +G R ALT+ Sbjct: 244 PLYDQIIYCEGMKDNVY---VEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTK 300 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 YA+ + K + + DD+ I+SV I +P+F GQTK KL + +A+ V+N Sbjct: 301 TFNDYAKKNKLLKESEQLSGDDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNI 360 Query: 400 LRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +R + +L QNP A ++ ++ + R+ + RK+A+ + LPGKLADCS Sbjct: 361 VRTQLEIFLEQNPSVAKLTIDKSMMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSD 420 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A +KI N +I ++ Sbjct: 421 KDPSKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 480 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M DLI++ +++L PP Sbjct: 481 AFGTGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPP 540 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + K YA+ +E +IL E + K I R+KGLGEM A QL +T MD R Sbjct: 541 LYKLEKNKKVWYAYSDEELNQILTEVGRDNNNK--IQRYKGLGEMDAEQLWDTTMDPEHR 598 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV ++ + + + LMG K + R +FI+E A ++ ++ Sbjct: 599 ILLRVTMDD--ETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLD 643 >gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina] gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis] gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan] gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo] gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis] gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis] gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 265/644 (41%), Positives = 380/644 (59%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|296328806|ref|ZP_06871320.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154141|gb|EFG94945.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 639 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + V+DNGRGIP + HPK+ KS +EI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PENIIEVMDNGRGIPTDIHPKY-GKSAMEIVLTILHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + + QK+ RG P ++ + GT + F+ D +IF Sbjct: 125 NALSEWLEVEVRKNGVVHYQKYHRGKPEENVKVIGSCDESEHGTIVRFKADGEIFETLI- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEET-----YKFDGGILDFLNEIVKEDT 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++ P Sbjct: 476 TAFGTSIGETFDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++ G + +YA+++ + IL + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359] gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359] Length = 636 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 263/651 (40%), Positives = 377/651 (57%), Gaps = 24/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLEPVRMRPGMYIG T ++ LHHL EV+DN++DE +AGY + I+V+L Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDESLAGYCDWIKVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ HP+ +S LE++ T LHAGGKF +Y+ISGGLHGVG+SV Sbjct: 62 HEDGSVEVEDNGRGIPVDVHPE-EGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P++ +E + +K GT + F+PDP IF + Sbjct: 121 VNALSEWLEVRVYRDGKIYRQRYERGKPVTLVEVIGET-DKHGTVVRFKPDPLIFSET-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L +K + +K F F GGLK +++ + Sbjct: 179 FDPDILEHRLREIAFLVPGLKIEFEDRINNEKKT-------FKFDGGLKEFVKYLNRGKK 231 Query: 282 LISSEIFTGKTEK----KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I+ +TEK VE A + + EI S+ NTI T +GGTH + + Sbjct: 232 VLHDVIYLKRTEKVKVKDKEDEVIVEIAFQYTDSYSEEILSFANTIKTVDGGTHVTAFKT 291 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + +Y K S DD+ ++SV+++ PEF GQTK+KL + + + Sbjct: 292 TLTRLMNEYGRKHNFLKNGDSFQGDDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLA 454 V A+R+ +P +L ++ + R R+ RE+ RK ++ LPGKLA Sbjct: 352 VNRAMREELKKIFDASPDLVRTILSKIMSTKQAREAARRAREMVRRKNVLQSTTLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS TELFIVEGDSAGGSAKQAR+R QAVLP+RGKILNV + +++ N+QI Sbjct: 412 DCSSTDRENTELFIVEGDSAGGSAKQARDRVFQAVLPIRGKILNVEKSSLDRLLKNEQIS 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D++ A+G + LRY K+IIMTDAD+DGAHI +LLLT FY+ M LIE +++ Sbjct: 472 DIIVAVGTGIGDDFDINKLRYGKIIIMTDADIDGAHIRTLLLTLFYRYMKPLIEDGRIYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + Y + + + + F+ K+EI R+KGLGEM QL ET M+ Sbjct: 532 ALPPLYRIRVGKEDFYVYSDAELMEYRKMFEG---KKMEIQRYKGLGEMNPEQLWETTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R ++RV I ++ LMG R +FI+ A + ++ Sbjct: 589 PETRKIIRVTIED----AEEADRLFEILMGNDPSSRREFIERHALKVKELD 635 >gi|304391681|ref|ZP_07373623.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130] gi|303295910|gb|EFL90268.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130] Length = 681 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 389/684 (56%), Positives = 502/684 (73%), Gaps = 9/684 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+DD ++ P +Q + K+G+ P +Y+AS I +LEGLEPVR Sbjct: 1 MSDDLFSGGASTPATTQVTPSTPVKTGKAAAKPVKGKT--EGDYNASDIEVLEGLEPVRR 58 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTD KALHHLF+EVIDN+MDE +AG+A+ IEV LD G+LT+ DNGRGIPV+ Sbjct: 59 RPGMYIGGTDSKALHHLFAEVIDNSMDEAVAGHASWIEVELDAEGYLTITDNGRGIPVDP 118 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKF +KS LE+I+TTLHAGGKFD YE SGGLHGVGISVVNALSD+L V VAR ++ Sbjct: 119 HPKFKDKSALEVIMTTLHAGGKFDGKAYETSGGLHGVGISVVNALSDDLIVEVARNRELY 178 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG + P+E +V+N+RGT++ F PD +IFG A F L KM +SKAYL G Sbjct: 179 RQSFSRGHAVGPVELVGEVQNRRGTKVRFHPDAQIFGKDARFKPLTLFKMARSKAYLFGG 238 Query: 241 VKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ WSCD ++ K + +K F+FPGGLK +L KL + ++ F G TEK+ H Sbjct: 239 VEIRWSCDPALVSGKDEVTDKAVFHFPGGLKDFLLEKLGKQMQVTDRPFAGTTEKRSGH- 297 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 G VEWAI W ++ + SYCNTI T EGGTHE+GLR L R +K YAEL NK+ I + Sbjct: 298 GAVEWAITWYGDDGFVNSYCNTIPTAEGGTHEAGLRTTLARSLKSYAELVGNKKGAMITT 357 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+M SA ++SVF+REPEF GQTK KL +++A R VE+A+RD FDH+L +P ++ KLL Sbjct: 358 DDVMTSAAAMISVFVREPEFVGQTKDKLATVEASRIVESAIRDAFDHWLAASPAQSAKLL 417 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 +WV++R+EER+RRR+++EVNRK A RKLRLPGKLADCS+N GTE+FIVEGDSAGGSAK Sbjct: 418 DWVVDRAEERMRRRQEKEVNRKNATRKLRLPGKLADCSKNAKGGTEIFIVEGDSAGGSAK 477 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR +QA+LPLRGKILNVASA +K+ ++QQI DL+QALGC T +++ +DLRY++VI Sbjct: 478 QARNRKSQAILPLRGKILNVASATRDKMASSQQIQDLIQALGCGTGTRFSADDLRYDRVI 537 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFF+QEM +IE L+L PPL++++QG K++YA D+ HK + Sbjct: 538 IMTDADVDGAHIASLLITFFHQEMPGIIETGSLYLAVPPLYKLSQGGKTMYARDDAHKDE 597 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ K GK K+++ RFKGLGEM+ +QLKET MD KRTLLRV I++ + + Sbjct: 598 LLKSEFKSGK-KVDLGRFKGLGEMMPAQLKETTMDPAKRTLLRVNIDEPIPAKDSIDR-- 654 Query: 660 NKLMGTKADERFKFIQERASFIDD 683 LMGTK + RF FIQE ASF+D+ Sbjct: 655 --LMGTKPELRFNFIQENASFMDE 676 >gi|163745982|ref|ZP_02153341.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45] gi|161380727|gb|EDQ05137.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45] Length = 651 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 348/646 (53%), Positives = 448/646 (69%), Gaps = 10/646 (1%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IEV L+ Sbjct: 12 DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIEVELN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHGVG SVV Sbjct: 72 ADYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD + V VAR +F Q FSRGIP P+EK N+RGT +TF D +IFG F Sbjct: 132 NALSDSMVVQVARNRELFEQSFSRGIPQGPVEKIGAAPNRRGTTVTFHADEQIFGA-HRF 190 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 +RLLKM +SKAYL V+ W K E P + F+FPGGL YL+ L + Sbjct: 191 KPSRLLKMVRSKAYLFSGVEIRW---KSEIEDGDTPMEATFHFPGGLADYLRETLGKATT 247 Query: 283 ISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339 + F G E ++ G VEWAI W + I SYCNT+ T EGGTHE G A+ Sbjct: 248 YAENPFAGTVEFQERFGVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEGGFWAAIL 307 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +GI+ Y EL N++A I DDL+ ++S FIREPEF GQTK +L + +A R VENA Sbjct: 308 KGIRAYGELANNRKAKDITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAARLVENA 367 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RD FD++L + A +L++++ R+EER+RRR+++E RK+A +KLRLPGKL DC+ Sbjct: 368 VRDHFDNWLAADTKSAGAILDFLVLRAEERMRRRQEKETARKSATKKLRLPGKLTDCTSK 427 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILNV A S KI N +I DL +A Sbjct: 428 TREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKITTNAEISDLCEA 487 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG +++ +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M LI+ HL+L PPL Sbjct: 488 LGVGMGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDSGHLYLACPPL 547 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FR+TQG K VY DE K LE+ GKGKI++SRFKGLGEM A LKET MD R Sbjct: 548 FRLTQGAKRVYCLDEAEKNMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPATRK 606 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV +++D+ +T D + +LMG K + RF++IQ+ A F++++ Sbjct: 607 LIRVTVDEDV--PGETGDLVERLMGKKPEMRFEYIQQNAQFVEELD 650 >gi|121602566|ref|YP_989184.1| DNA topoisomerase IV subunit B [Bartonella bacilliformis KC583] gi|4033401|sp|P94281|GYRB_BARBK RecName: Full=DNA gyrase subunit B gi|1766064|gb|AAC71079.1| GyrB [Bartonella bacilliformis] gi|120614743|gb|ABM45344.1| DNA topoisomerase IV, B subunit [Bartonella bacilliformis KC583] Length = 692 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 425/695 (61%), Positives = 530/695 (76%), Gaps = 14/695 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEI-------PDSPAFANQSASDN--YDASSIRI 51 M++D+ DLFS L K P P + ++ Y+ASSIRI Sbjct: 1 MSNDNKDLFSVLNHAQSRIDRKENTQYTSAHSEIVVPAVPLSSPHHHKEDSTYNASSIRI 60 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVR+RPGMYIGGTD KALHHLFSE+IDNAMDE +AGYA+LI+++LD N +LTV D Sbjct: 61 LEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDITLDSNNYLTVTD 120 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIP+ENHP+ P+KSTLE+I+T LH+GGKFD Y+ SGGLHGVGISVVNALSD++ V Sbjct: 121 NGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGISVVNALSDDMEV 180 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR+ ++ Q+FSRGIP S LE+ V N+RGTR+ F PD +IFG+ FD ++ K+ Sbjct: 181 EVARERKLYRQRFSRGIPQSGLEELGDVYNRRGTRVCFHPDSQIFGENTAFDPEKIYKIA 240 Query: 232 QSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL VK W+CD + IPEK+ FYFP GLK YL L+N+ L+++EIF+G Sbjct: 241 RSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKNKHLVTAEIFSG 300 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KT++ + G+VEWAIAW + I SYCNTI T+EGGTHE+GLR L RG+K YAEL Sbjct: 301 KTQQ-LSGHGSVEWAIAWHNGDAYIQSYCNTIPTEEGGTHETGLRQTLLRGLKAYAELIG 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKRA I SDD+M S V +LSVFI++P+F GQTK +L + +AQR VENA+RDPFDH+L Sbjct: 360 NKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVENAIRDPFDHWLAN 419 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +P EATKLL WVIER+EERL+RR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVE Sbjct: 420 SPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCSQNSAAGAELFIVE 479 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR+NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE Sbjct: 480 GDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADLILALGCGTRSKYRE 539 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 EDLRYE++IIMTDADVDGAHIASLL+TFF+QE+ DLI HL+L PPL+RI+QG K Y Sbjct: 540 EDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVPPLYRISQGGKVAY 599 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ HK ++L+ + GKGKIEI RFKGLGEM A QLKET M+ KRTLLRV I D Sbjct: 600 ARDDSHKDELLKT-EFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKRTLLRVSI--DTF 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +++T++++ LMGTK +ERF+FIQE ++F +++ Sbjct: 657 EMQETKETVQNLMGTKPEERFRFIQESSTFANNLD 691 >gi|299133795|ref|ZP_07026989.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2] gi|298591631|gb|EFI51832.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2] Length = 689 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 381/681 (55%), Positives = 499/681 (73%), Gaps = 18/681 (2%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 + DLF++ + +GS+ +P+ SA Y A+ I +LEGLEPVR RPG Sbjct: 17 AANDLFASGDRKPRGSA-----------APSAKPSSAEAGYTAADIEVLEGLEPVRRRPG 65 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIGGTDEKALHHLF+EVIDN+MDE +AG+A+ IEV L +G+LTV+DNGRGIPV+ HPK Sbjct: 66 MYIGGTDEKALHHLFAEVIDNSMDEALAGHASFIEVELGADGYLTVIDNGRGIPVDPHPK 125 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 F NKS LEII+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS +L V VAR ++ Sbjct: 126 FKNKSALEIIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSQLVVEVARNQKLYRMT 185 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F RG P LE+ KV N+RGT I F+PD +IFG KA F RL KM +SKAYL G V+ Sbjct: 186 FERGKPKGKLEELGKVHNRRGTSIRFKPDTEIFGGKAVFKPQRLFKMARSKAYLFGGVEI 245 Query: 244 CWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 W C E+ + +P ++ F+FPGGLK YL + + +L+ +IF+GK+ + G H G Sbjct: 246 RWKCAPELLKGIEDVPAEDTFHFPGGLKDYLAAAIHSDTLVHPDIFSGKSGRNGAH-GAC 304 Query: 303 EWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360 EWA+AW + + ++SY NT+ T +GGTHE+G+R AL RGI+ +AE T K+A SI S+ Sbjct: 305 EWAVAWTADADGFMSSYTNTVPTPDGGTHETGMRSALLRGIRDHAERTGQGKKASSITSE 364 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+M+ A +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L NP +A KLL+ Sbjct: 365 DVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPTQANKLLD 424 Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 ++IER++ERLRRR ++E++RKTA++KLRLPGKLADC+ G+ELFIVEGDSAGGSAKQ Sbjct: 425 FIIERADERLRRRAEKEISRKTAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQ 484 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 AR+R QA+LPLRGKILNVASA +K+ N Q+ DL+QA+GC YRE+DLRY ++II Sbjct: 485 ARDRKTQAILPLRGKILNVASATRDKMVANAQLSDLIQAIGCGIGINYREDDLRYSRIII 544 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 MTDADVDGAHIASLL+TFFY++M LI+ HL+L PPL+R+T G+K++YA DE H+ ++ Sbjct: 545 MTDADVDGAHIASLLITFFYRQMPKLIDGGHLYLAVPPLYRMTHGSKTLYARDEAHRDEL 604 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 L++ + H K+EI RFKGLGEM+ +QLKET MD KRTLLRV + T S+ Sbjct: 605 LKK-EFHANAKVEIGRFKGLGEMMPNQLKETTMDPRKRTLLRVVL--ATEDRDSTATSVE 661 Query: 661 KLMGTKADERFKFIQERASFI 681 +LMG+KA+ RF+FI E+A F Sbjct: 662 RLMGSKAEARFEFITEKAEFA 682 >gi|116252261|ref|YP_768099.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|115256909|emb|CAK08003.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 700 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 445/702 (63%), Positives = 545/702 (77%), Gaps = 23/702 (3%) Query: 3 DDSIDLFSTLP-PQSQGSSEKLKKSGEIPDSPAFANQ-----------------SASDNY 44 DDS DLFS +P + + ++K E P A S SD+Y Sbjct: 2 DDSNDLFSGMPLSEKREEAQKPAAPAERPPVTAALAAAAAPPAAGASARPAPAASNSDDY 61 Query: 45 DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104 ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD Sbjct: 62 GASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVYLDLE 121 Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNA 164 G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNA Sbjct: 122 GYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNA 181 Query: 165 LSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224 LSD+L V VAR ++ Q+FSRG+P LE+ V N+RGTR+ F PDP+IFGD FDA Sbjct: 182 LSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHMKFDA 241 Query: 225 ARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 AR+ +M +SKAYL G V+ WSC+ + E +P+K F+FPGGLK YLQ + + Sbjct: 242 ARVFRMARSKAYLFGGVEIRWSCEAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTV 301 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343 + EIF GKTEK + G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+G+K Sbjct: 302 TREIFAGKTEK-TSGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLK 360 Query: 344 KYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403 YAELTQNKRA I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDP Sbjct: 361 AYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDP 420 Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 FDHYL NP E+ KLL+WVIER+EERLRRRK++EVNRK+A+RKLRLPGKLADCSQN A G Sbjct: 421 FDHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKSAVRKLRLPGKLADCSQNTAEG 480 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQ+ DL+QALGC Sbjct: 481 AELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQALGCG 540 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583 TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL++IT Sbjct: 541 TRSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKIT 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643 QG+KS YA D+ H+ ++++ K GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V Sbjct: 601 QGSKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKV 659 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 I++ + T+ +++ LMGTK + RF+FIQ+RA+F +++ Sbjct: 660 LIDEV--DFEGTRSAVDDLMGTKPEARFRFIQDRAAFAENLD 699 >gi|158424137|ref|YP_001525429.1| DNA topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571] gi|158331026|dbj|BAF88511.1| gram negative topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571] Length = 672 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 393/684 (57%), Positives = 503/684 (73%), Gaps = 22/684 (3%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ +S DLFS PP + + P A+ +Y A+ I +LEGLEPVR Sbjct: 1 MS-NSDDLFSNPPP---------SRGRKTTVVPQMAS-----DYTAAHIEVLEGLEPVRR 45 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTD KALHHLF+EVIDN+MDE +AG+A IEV L +G LTV+DNGRGIPVE Sbjct: 46 RPGMYIGGTDAKALHHLFAEVIDNSMDEAVAGHATFIEVQLSNDGSLTVIDNGRGIPVEE 105 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLH+GGKFD+ YE SGGLHGVG+SVVNALSD V VAR T++ Sbjct: 106 HPKFPGKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDAFEVEVARNQTLY 165 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG P L++ ++ N+RGT+I F PDP IFG A F+ R+ +M ++KAYL G Sbjct: 166 RQTFSRGTPQGKLKEVGRITNRRGTKIRFHPDPDIFGPSAKFEPGRVFRMARAKAYLFGG 225 Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ WSCD E +A G+PEK F FPGGL+ YL +E ++L+ +IF+G+ +K G H Sbjct: 226 VEIRWSCDPELLAGTTGVPEKMTFRFPGGLRDYLAADIEGQTLVHGDIFSGRVQKPGGH- 284 Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G+ EWA+AW + + I+SYCNTI T +GGTHE+GLR L +G++++ E T KRA I Sbjct: 285 GSAEWAVAWIADGDGGISSYCNTIPTPDGGTHENGLRAVLLKGLREHGERTNQSKRAALI 344 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D+ +LSVF+REPEF GQTK +L + +A R VE +RDPFDH+L NP +AT+ Sbjct: 345 TGEDVTAGCAAMLSVFVREPEFQGQTKERLATAEAARIVEQTVRDPFDHWLAANPAQATR 404 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 L + V+ER+EERLRR++++E++RKTA+RKLRLPGKLADCS A G+ELFIVEGDSAGGS Sbjct: 405 LFDHVVERAEERLRRKQEKEISRKTAVRKLRLPGKLADCSNTEAAGSELFIVEGDSAGGS 464 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R QAVLPLRGKILNVA+AG +K+ NQQ+ DL QALGC T S YRE DLRYEK Sbjct: 465 AKQARDRRTQAVLPLRGKILNVANAGRDKLAQNQQLADLGQALGCGTLSHYREADLRYEK 524 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M L+++ HLFL PPL+RITQG K++YA D+ HK Sbjct: 525 VIIMTDADVDGAHIASLLVTFFYRQMPKLVDEGHLFLAVPPLYRITQGAKTLYARDDAHK 584 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +K+L++ + +G+GK+EI RFKGLGEM+ +QLKET MD RTLL+V I + + T D Sbjct: 585 EKLLKK-EFNGRGKVEIGRFKGLGEMMPAQLKETTMDPKTRTLLQVSIEEAARAA--TDD 641 Query: 658 SINKLMGTKADERFKFIQERASFI 681 + +LMG K + RF FI E A+F Sbjct: 642 IVERLMGNKPEARFAFISEHAAFA 665 >gi|313157284|gb|EFR56710.1| DNA gyrase, B subunit [Alistipes sp. HGB5] Length = 653 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 266/667 (39%), Positives = 383/667 (57%), Gaps = 26/667 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + + Y AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE + Sbjct: 2 STELENVKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY I+V+++ + +TV DNGRGIP + H K KS LE++LT LHAGGKFD +Y++ Sbjct: 62 AGYCTDIDVTINEDNSITVRDNGRGIPTDYHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 SGGLHGVG+S VNALS L + R I+ Q +S+G P S +E + + RGT ITF Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHSRDGKIYRQSYSKGAPTSQVEVVGECTD-RGTTITF 179 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF + L + A+L+ + + + E + FY GL Sbjct: 180 KPDGSIFTLTTEYKYEILANRLRELAFLNKGIHLNLTDKRSKDENG-EYVHDNFYSEEGL 238 Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327 K ++Q R + I +I TEK G VE A+ + + E SY N I T EG Sbjct: 239 KEFVQYLDATRGTPIIDQIIYLDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEG 295 Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH +G R ALTR +KKYAE + K I DD ++SV ++EP+F GQTKT Sbjct: 296 GTHLTGFRRALTRTLKKYAEDSGMLSKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKT 355 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAI 444 KL + + V+ A+ HYL +NP +A +++ VI + R + V RKT + Sbjct: 356 KLGNDEVSAAVDQAMSSALGHYLEENPKDAKAIVQKVILAATARHAARHAREMVQRKTVL 415 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC+ E+F VEGDSAGG+AK R+R+ QA++PLRGKILN+ A Sbjct: 416 SGAGLPGKLADCTSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQE 475 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFF 559 ++ N++I ++ ALG ++ E LRY+K+IIMTDADVDG+HIA+L+LTFF Sbjct: 476 HRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFF 535 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 +++M +LIE H+++ +PPL+ + +G + Y E+ + I EF K + I R+KG Sbjct: 536 FRKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGK----GVHIQRYKG 591 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A QL +T M+ + R L +V I + + + LMG + R +FI++ A Sbjct: 592 LGEMNAHQLWDTTMNPDTRILRQVNIE----NAAEADRIFSMLMGDEVPPRREFIEKNAH 647 Query: 680 FIDDVGT 686 + ++ Sbjct: 648 YA-NIDA 653 >gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC 15579] gi|187774290|gb|EDU38092.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC 15579] Length = 637 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 253/653 (38%), Positives = 375/653 (57%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ +V V R I+ QK+ RGIP + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTEDH-GTKIYFKPDVEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + + A+L+ +K + ++ ++E F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKQEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+ Sbjct: 469 IRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + ++ + L E I R+KGLGEM QL ET Sbjct: 529 YIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNT-NIQRYKGLGEMDPEQLWETT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V I + + LMGTK + R FI+ A + ++ Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRRDFIENNADKVVNLD 636 >gi|260463892|ref|ZP_05812088.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum WSM2075] gi|259030267|gb|EEW31547.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum WSM2075] Length = 685 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 413/684 (60%), Positives = 526/684 (76%), Gaps = 10/684 (1%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF---ANQSASDNYDASSIRILEGLEPVR 59 DD+ DLF L Q Q + + + + A A++ S+ Y A+ I +LEGLEPVR Sbjct: 2 DDNNDLFGDLDKQPQPVRTPARPADPLVQAAAKRPAASRDGSEGYSAADIEVLEGLEPVR 61 Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A I+V L +G+L+V DNGRGIPV+ Sbjct: 62 RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGYLSVTDNGRGIPVD 121 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HPKF K LE+I+TTLH+GGKFD+ YE SGGLHGVG+SVVNALSD L V VAR + Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + Q+FSRG+P+S LE +V N+RGT+I F PD +IFG A F+ ARL +MT+SKAYL G Sbjct: 181 YRQRFSRGVPVSGLEHLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240 Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 V+ W+CD I EK P K EF+FPGGLK YL+ L + ++ EIF GK++K+G H Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSDKQGGH 300 Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358 G++EWA+ W + + SYCNTI T EGGTHE+G R LTRG++ YAEL NKRA + Sbjct: 301 -GSLEWAVTWFGGDGFVNSYCNTIPTGEGGTHEAGFRNVLTRGLRAYAELVGNKRASIVT 359 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L NP EA+KL Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQAR+R++QAVLPLRGKILNVASAG++K+ NQQI DL+QALGC TRS+YR+EDLRY++V Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFFYQEM L+ HL+L PPL+ I QG K YA D+ HK Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L + G+GK+E+ RFKGLGEM+A+QLKET MD KRTLLRV++N+ ++ T+D Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMAAQLKETTMDPRKRTLLRVDVNEIDSA---TKDR 655 Query: 659 INKLMGTKADERFKFIQERASFID 682 +++LMGTK + RF+FIQERA F + Sbjct: 656 VDELMGTKPEARFRFIQERAEFAE 679 >gi|19705416|ref|NP_602911.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713409|gb|AAL94210.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 639 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + V+DNGRGIP + HPK+ KS +EI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PENIIEVMDNGRGIPTDIHPKY-GKSAMEIVLTILHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + + QK+ RG P ++ + GT + F+ D +IF Sbjct: 125 NALSEWLEVEVRKNGVVHYQKYHRGKPEEDVKVIGSCDESEHGTIVRFKADGEIFETLI- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEET-----YKFDGGILDFLNEIVKEDT 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI + ++++ P Sbjct: 476 TAFGTSIGETFDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++++ G + +YA+++ + IL + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM 17244] gi|169258323|gb|EDS72289.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM 17244] Length = 636 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 374/651 (57%), Gaps = 22/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDAS I++LEGLE VR RPGMYIG T EK LHHL E++DN++DE +AG+ I Sbjct: 3 KQNSNYDASKIKVLEGLEAVRKRPGMYIGSTGEKGLHHLVYEIVDNSVDEALAGFCKNIV 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +TV D+GRGIP + K+ KS +EI LT LHAGGKFD+ TY++SGGLHGVG Sbjct: 63 VTIGEGDTITVEDDGRGIPTGMNEKY-KKSAVEIALTMLHAGGKFDSGTYKVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L V V + ++ QK+ RG P++ LE K + GT + F+PD +IF + Sbjct: 122 VSVVNALSEHLTVNVYQNGQVYEQKYERGKPITGLEVVGKTKR-TGTTVFFKPDGEIFSE 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + A+L+ + +E + ++E F++ GG+ ++ Sbjct: 181 LV-FNYDTLKHRIRELAFLNKGLNITLKDTREGKD-----QEESFHYEGGIIEFVDYANR 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ E+ + E +E A+ + I S+ N I T EGG H +G + A Sbjct: 235 GKEKLTPEVIYFEKESDV---CMLEVAMQFSTSYSESIYSFANNINTVEGGMHVNGFKTA 291 Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + ++ DD+ ++SV + +PEF GQTKTKL + + + Sbjct: 292 LTRSINAYARKYNILKDNEENLSGDDIREGLCVVISVKLADPEFEGQTKTKLGNPEVRGY 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V+ + D YL ++P A ++E + R RK ++ V RK+ + LPGKLA Sbjct: 352 VDTTVGDNISSYLEEHPPVAKIIVEKALTAQRARKAARKAKDLVRRKSVLESTALPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E++IVEGDSAGGSAK RN QA+LPLRGKILNV A ++I N I Sbjct: 412 DCREKDPSKCEIYIVEGDSAGGSAKLGRNSKTQAILPLRGKILNVEKARLDRILNTDTIR 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G ++ E RY K++IMTDADVDGAHI +LLLTFFY+ M LI+ ++++ Sbjct: 472 SMITAFGTGISEEFNIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ + K Y + +E ++ L+E G+ KI + R+KGLGEM QL +T M+ Sbjct: 532 AQPPLYKLEKQKKVWYLYSDEQLEEKLQEI---GRDKIGLQRYKGLGEMNGEQLWDTTMN 588 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ + + LMG + R FI E A + ++ Sbjct: 589 PENRTLLQVSIDD----AAYADEIFSILMGDQVQPRKDFITENARKVQNLD 635 >gi|319783876|ref|YP_004143352.1| DNA topoisomerase IV, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169764|gb|ADV13302.1| DNA topoisomerase IV, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 685 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 409/684 (59%), Positives = 517/684 (75%), Gaps = 10/684 (1%) Query: 3 DDSIDLFSTLPPQSQG---SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVR 59 DDS DLF + Q Q ++ + + S+ Y A+ I +LEGLEPVR Sbjct: 2 DDSNDLFGNMDKQPQPVRTAARPADPLVVQATKRPASTKDGSEGYSAADIEVLEGLEPVR 61 Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIGGTD+KA+HHLF+EVIDN+MDE +AG+A I+V L +G+L V DNGRGIP++ Sbjct: 62 RRPGMYIGGTDDKAMHHLFAEVIDNSMDEAVAGHATFIDVELSADGYLAVTDNGRGIPID 121 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HPKF K LE+I+TTLH+GGKFD+ YE SGGLHGVG+SVVNALSD L V VAR + Sbjct: 122 PHPKF-KKPALEVIMTTLHSGGKFDSKVYETSGGLHGVGVSVVNALSDHLEVEVARGRQL 180 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + QKFSRG+P++ LE+ +V N+RGT+I F PD +IFG A F+ ARL +MT+SKAYL G Sbjct: 181 YRQKFSRGVPVTGLEQLGEVHNRRGTKIRFHPDEQIFGKGAAFEPARLYRMTRSKAYLFG 240 Query: 240 RVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 V+ W+CD I EK P K EF+FPGGLK YL+ L + ++ EIF GK+EK+G H Sbjct: 241 GVEIRWTCDPSLIKEKDQTPAKAEFHFPGGLKDYLKASLGDDFQVTREIFAGKSEKQGGH 300 Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358 G++EWA+ W + I SYCNTI T EGGTHE+G R LTRG++ YA+L NKRA + Sbjct: 301 -GSLEWAVTWFGGDGFINSYCNTIPTGEGGTHEAGFRNVLTRGLRAYADLVGNKRASIVT 359 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 S+D+MISA G+LSVFIREPEF GQTK +L +++A R VE A+RDPFDH+L NP EA+KL Sbjct: 360 SEDVMISAAGMLSVFIREPEFVGQTKDRLATIEAIRIVETAIRDPFDHWLADNPQEASKL 419 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 LEWVI R++ER+RRR+++EV+RK+A+RKLRLPGKLADC+QN A G ELFIVEGDSAGGSA Sbjct: 420 LEWVIARADERVRRRQEKEVSRKSAVRKLRLPGKLADCTQNAAAGAELFIVEGDSAGGSA 479 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQAR+R++QAVLPLRGKILNVASAG++K+ NQQI DL+QALGC TRS+YR+EDLRY++V Sbjct: 480 KQARDRASQAVLPLRGKILNVASAGNDKLAANQQISDLIQALGCGTRSKYRDEDLRYDRV 539 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFFYQEM L+ HL+L PPL+ I QG K YA D+ HK Sbjct: 540 IIMTDADVDGAHIASLLITFFYQEMPALVRGGHLYLAVPPLYSIRQGGKVAYARDDAHKD 599 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L + G+GK+E+ RFKGLGEM+A+QLKET MD KRTLLR+++ + KD Sbjct: 600 ELL-RTEFTGRGKVELGRFKGLGEMMAAQLKETTMDPRKRTLLRIDVIDAETATKDA--- 655 Query: 659 INKLMGTKADERFKFIQERASFID 682 ++ LMGTK + RF+FIQERA F + Sbjct: 656 VDALMGTKPEARFRFIQERAEFAE 679 >gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree] gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree] Length = 637 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 377/653 (57%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS++ V V R+ I+ QKF RGI + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + + A+L+ +K + ++ +KE F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + I ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRAINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+ Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + + + L E I R+KGLGEM QL +T Sbjct: 529 YIAQPPLYRIFKAKKEIYVYSDPELDEALLELGGKDTNT-NIQRYKGLGEMNPEQLWDTT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V I + + LMGTK + R +FI++ A + ++ Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRREFIEDNADKVVNLD 636 >gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 655 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 264/657 (40%), Positives = 384/657 (58%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEEKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIVLKEDGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209 GGLHGVGISVVNALS+ +HVTV+R F+Q+F +GI L+ ++ K ++GT I F Sbjct: 121 GGLHGVGISVVNALSEWVHVTVSRDGYEFNQRFEKGIAKGELKSQKQQKKPFRKGTTICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF D FD A L + AYL+G VK + +++ E E + + GG+ Sbjct: 181 KPDTSIFTDGIKFDYALLSSRLRELAYLNGGVKIIFRDERQNLSDGSFKE-EIYLYDGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y++ + + I SE+ ++K + + I + N I T +GGT Sbjct: 240 KEYVEYINKEKESIHSEVIYVDSQKDNVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ + ++ +++ +LSV + EPEF GQTKTKL Sbjct: 299 HIDGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ ++ R+ V RK+ + Sbjct: 359 GNTEVRGIVDSLIGESLIKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS G E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSGAEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAK 478 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ D Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFNVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRD 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E ++ +E+F + K I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHKYCYNENQLKQTIEDFGE--KANYNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ ++ +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSANLD 649 >gi|190891866|ref|YP_001978408.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652] gi|190697145|gb|ACE91230.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652] Length = 693 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 446/695 (64%), Positives = 540/695 (77%), Gaps = 16/695 (2%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----------SASDNYDASSIRI 51 DDS DLFS +P + + + +PA A S SD+Y ASSIR+ Sbjct: 2 DDSNDLFSGMPLSEKREEAQKPAAAAERPAPAAATAPAASARPAPAGSNSDDYGASSIRV 61 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD G+LTV D Sbjct: 62 LEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLTVTD 121 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNALSD L V Sbjct: 122 NGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDFLEV 181 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR ++ Q+FSRG+P LE+ V N+RGTR+ F PD +IFG+ FDAAR+ +M Sbjct: 182 EVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGEHMKFDAARVFRMA 241 Query: 232 QSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G V+ WSCD + E +P+K F+FPGGLK YLQ + ++ EIF G Sbjct: 242 RSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVTREIFAG 301 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KTEK + G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQ Sbjct: 302 KTEK-ASGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKAYAELTQ 360 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKRA I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL Sbjct: 361 NKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLAD 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELFIVE Sbjct: 421 NPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK NQQ+ DL+QALGC TR++YR+ Sbjct: 481 GDSAGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGTRAKYRQ 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL++ITQG KS Y Sbjct: 541 EDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGAKSAY 600 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ H+ ++++ K GK K+EISRFKGLGEM+ +QLKET MD +KRTLLRV I++ Sbjct: 601 ARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLRVLIDEV-- 657 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + T+ +++ LMGTK + RF+FIQERA+F +++ Sbjct: 658 DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 692 >gi|119355886|ref|YP_910530.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266] gi|119353235|gb|ABL64106.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266] Length = 643 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 261/655 (39%), Positives = 375/655 (57%), Gaps = 25/655 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 A Y AS+I+IL+G+E VR RP MYIG + LHHL E++DN++DE + G+ I Sbjct: 6 PQAPSPYIASNIQILDGIEHVRKRPAMYIGDIHTRGLHHLIYEIVDNSIDETLGGFNEYI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 VSL+ +G +TV+D+GRGIPV+ HP+ KS LE+++T + AGGKFD +Y++SGGLHGV Sbjct: 66 FVSLNPDGSVTVIDHGRGIPVDIHPQ-KQKSALELVMTVIGAGGKFDKGSYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R + Q+F RG+P + + + +++GT+ TF+PD IF Sbjct: 125 GASVVNALSEWCEVEVYRDGKAYFQRFERGVPQGNVREIG-LSDQKGTKTTFKPDNLIFK 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ++ + A+L+ + +E F++ GGLK +++ Sbjct: 184 T-TEFRKDIIIDRMRELAFLNKNLSITVQD--------ADGAQEIFHYEGGLKEFVRFTD 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 NR + E E+ T VE A+ + + + SY N I T EGGTH +G R Sbjct: 235 INRLSLIKEPIYFIGERDTTI---VEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRK 291 Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + YA+ + + + DD ++SV + EP+F GQTKTKL + + Q Sbjct: 292 ALTRTLNLYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVEEPQFEGQTKTKLGNSETQS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE+ + + + NP ++E V + R RK +E RK+ + LPGKL Sbjct: 352 IVESIVNELLSEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ N++I Sbjct: 412 ADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEI 471 Query: 514 MDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE + Sbjct: 472 KTIILALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ + G YA D+E + I + KK GK I I R+KGLGEM QL Sbjct: 532 YIAQPPLYLVKSGKDQQYAWDDEERNSITDTLKKMQKGKANIHIQRYKGLGEMNPEQLWS 591 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD R+LL+V + + ++ + LMG K + R +FI++ A ++ + Sbjct: 592 TTMDPAHRSLLQVSVE----NAREADQIFSTLMGDKVEPRREFIEKNARYVRRLD 642 >gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf] gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657] gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf] gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657] Length = 637 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 253/653 (38%), Positives = 373/653 (57%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 PQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ +V V R I+ QK+ RGIP + L+ GT+I F+PD +IF Sbjct: 121 VGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTEKH-GTKIYFKPDVEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + + A+L+ +K + ++ ++E F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKQEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+ Sbjct: 469 IRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + ++ + L E I R+KGLGEM QL ET Sbjct: 529 YIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNT-NIQRYKGLGEMDPEQLWETT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTLL+V I + + LMGTK + R FI+ A + ++ Sbjct: 588 MNPEHRTLLQVTIEDAM----AADEIFTILMGTKVEPRRDFIENNADKVVNLD 636 >gi|34763292|ref|ZP_00144250.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887040|gb|EAA24153.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 639 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 257/648 (39%), Positives = 377/648 (58%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIGTTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKIL 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + VVDNGRGIP + HPK+ KS LEI+LT LHAGGKF+N Y++SGGLHGVG+SVV Sbjct: 66 PENIIEVVDNGRGIPTDIHPKY-GKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAG 221 NALS+ L V V + TI QK+ RG P ++ N+ GT + F+ D +IF Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIVGSCDINEHGTIVRFKADGEIFETLI- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ + S ++ +K I + F GG+ +L ++ + Sbjct: 184 YNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEEI-----YKFDGGILDFLNEIVKEDT 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTR 340 I + F +E+ V+ + +N I S+ N I T EGGTH G R ALT+ Sbjct: 239 TIIEKPFYVSSEQDNV---GVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + + ++ +D+ VGI+S I +P+F GQTK KL + + V Sbjct: 296 VINDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNT 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L NP ++E ++ + R +K RE+ + + + LPGKLADC+ Sbjct: 356 IVSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCT 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A E+FIVEGDSAGGSAKQ R+R NQA+LPLRGKI+NV AG K + +I +V Sbjct: 416 SKKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+MTDADVDGAHI +L+LTF Y+ M DLI ++++ P Sbjct: 476 TAFGTSIGETFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ G + VYA+++ + +L + + K K I R+KGLGEM QL ET M+ + Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNK-KYTIQRYKGLGEMNPEQLWETTMNPDG 594 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ + ++ +KLMG K + R +FI+E A ++ ++ Sbjct: 595 RLLLKVSID----NAREADMLFDKLMGDKVEPRREFIEEHAEYVKNID 638 >gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f] gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f] Length = 652 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 258/653 (39%), Positives = 380/653 (58%), Gaps = 21/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +A Y + IEV+++ Sbjct: 12 SYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALASYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGMSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWPDGTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + AYL+ ++ + + + + G + E+FY GL+ +++ +R Sbjct: 189 DYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKSEQFYSEEGLREFVRFIESSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + +++ +EK+G +E AI + E SY N I T EGGTH +G R ALTR Sbjct: 248 LINDVIYLNSEKQGIP---IEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI + R RK RE+ ++ + + LPGKLADCS Sbjct: 365 VGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSD 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGG+AKQ RNR QA+LPLRGKILNV A K + +I ++ Sbjct: 425 KDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDEIRNIYT 484 Query: 519 ALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ALG + + LRY K+IIMTDADVDG+HI +L++TFF++ M +I+ +L+ Sbjct: 485 ALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVIQNGYLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + +PPL+ +G Y + +QK ++ + + I R+KGLGEM A QL ET M Sbjct: 545 IATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTM 604 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 D R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 605 DPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NIDA 652 >gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435] gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus haemolyticus JCSC1435] Length = 644 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS++L V V R +TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L K + A+L+ + ++E E+ ++ +++ GG+K+Y Sbjct: 181 SEIFTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQ----REDTYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K +E A+ + + SY N I T EGGTHE Sbjct: 237 VELLNENKEPIHEEPIYIHQTKDDV---EIEIAMQYNSGYATNLLSYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRILNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L ++P A ++E I S R+ +K RE RK+A+ Sbjct: 354 SEVRQIVDRLFAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K+ R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG + Y ++ K+ E K +ISR+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLAQGKQKYYVFNDRELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R +L+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPENRMMLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237] gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237] Length = 653 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 259/666 (38%), Positives = 381/666 (57%), Gaps = 24/666 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 A ++ +NY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + Sbjct: 2 SEEANKDEQKKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 G+ + I V+++ + +TV DNGRGIPV+ H K S L++++T + AGGKFD +Y++ Sbjct: 62 GGHCDTITVAINEDNSITVRDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKDSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+S VNALS +L TV R TI+ Q++ +G L P++ + RGT +TF Sbjct: 121 SGGLHGVGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGET-EIRGTEVTFY 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269 PD IF F+ L + +YL+ V + + + + +E FY GL Sbjct: 180 PDETIFTQTVEFNYDTLANRMRELSYLNKGVSITMTDKRQKDKDTPSGFHEERFYSEEGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGG 328 K +++ NR + + + + EK G VE A+ + E Y N I T EGG Sbjct: 240 KEFIKFLDGNREPLIKGVISMEGEKNGIP---VEVAMVYNTSYTENLHSYVNNINTHEGG 296 Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH SG R LT +KKYA+ + K I DD I+SV + EP+F GQTKTK Sbjct: 297 THLSGFRRGLTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIISVKVGEPQFEGQTKTK 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445 L + + V A+ + YL +NP +A +++ V+ + R K RE+ RKT + Sbjct: 357 LGNREVSAAVSQAVSEMLSDYLEENPEDAKIIVQKVVLAATARHAATKAREMVQRKTVMS 416 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKL+DCS E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A Sbjct: 417 IGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMRH 476 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 ++ N++I ++ ALG ++ + LRY KV+IM DADVDG+HI +L+LTFF+ Sbjct: 477 RVFENEEIKNIYTALGVSIGTEEDSQALNLEKLRYHKVVIMCDADVDGSHIETLILTFFF 536 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + M +L+E H+++ +PPL+ + +G K YA +++ + +I E F G + I R+KGL Sbjct: 537 RYMRELVEAGHVYIATPPLYLVKKGAKKRYAWNDKERDEIAESF----NGSVGIQRYKGL 592 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL +T M+ RTL +V I +T + LMG + R +FI++ A + Sbjct: 593 GEMNAEQLWDTTMNPEFRTLRQVVIENAT----ETDRVFSMLMGDEVPPRREFIEKNAVY 648 Query: 681 IDDVGT 686 ++ Sbjct: 649 A-NIDA 653 >gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 652 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 260/662 (39%), Positives = 383/662 (57%), Gaps = 21/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AGY Sbjct: 2 SEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEAVAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ ++V DNGRGIP + K NKS LE+++T LHAGGKFD TY++SGGL Sbjct: 62 DDILVTIHEGNSISVQDNGRGIPTGINKK-ENKSALELVMTVLHAGGKFDKDTYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L V R IF Q++ +G P ++ + + GT +TF PDP+ Sbjct: 121 HGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGE-SERTGTTVTFFPDPE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + A+L+ ++ ++EI + K+ F+ GGL+ +++ Sbjct: 180 IFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDG-SFRKDVFFSEGGLQEFVK 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 NR + + + K+G VE A+ + + E SY N I T EGG+H +G Sbjct: 239 FLDGNRQSLIPDPIYVEGIKQGVP---VELALQYNDTYSENVHSYVNNINTIEGGSHVAG 295 Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +KKYAE + + + + DD ++SV + EP+F GQTKTKL + + Sbjct: 296 FRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + YL +NP EA +++ VI R+ + V RKT + LP Sbjct: 356 VMGAVDVAVGEILSTYLEENPREAKIIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS N H E+F VEGDSAGG+AKQ R+R QA++PLRGKILNV A KI N Sbjct: 416 GKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYEN 475 Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG + E LRY K++IMTDADVDG+HIA+L+LTF+++ M + Sbjct: 476 EEIKNMFTALGVSVGTPDDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKE 535 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 LIE ++++ +PPL+ + +G +S YA E+ + + ++ K GK + + R+KGLGEM Sbjct: 536 LIENGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRYKGLGEMN 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL +T M+ RTL +V I+ + LMG + R +FI++ A + + Sbjct: 596 AEQLWDTTMNPEHRTLRQVTIDNAAEC----DRIFSMLMGDEVAPRREFIEKNARYAK-I 650 Query: 685 GT 686 Sbjct: 651 DA 652 >gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNA S EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNAPSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|167753648|ref|ZP_02425775.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216] gi|167658273|gb|EDS02403.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216] Length = 652 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 267/666 (40%), Positives = 383/666 (57%), Gaps = 25/666 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + + Y AS+I++LEGLE VR RP MYIG EK LHHL EV+DN++DE + Sbjct: 2 STEGKEIKKQEEEYSASNIQVLEGLEAVRKRPAMYIGDIGEKGLHHLVYEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ I+V+++ + +TV DNGRGIP + H K KS LE++LT LHAGGKFD +Y++ Sbjct: 62 AGHCTDIDVTINEDNSITVKDNGRGIPTDFHEK-EGKSALEVVLTVLHAGGKFDKGSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+S VNALS L + R IF Q +S+G P SP+E + RGT ITF+ Sbjct: 121 SGGLHGVGVSCVNALSTLLIAEIHRDGKIFRQSYSKGAPTSPVEVIGTC-DDRGTTITFK 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD IF + L + A+L+ + ++ E + FY GLK Sbjct: 180 PDGSIFTLTTEYKYDILANRLRELAFLNKGIHLNLLDKRQRDENG-EYVGDHFYSEEGLK 238 Query: 271 TYLQTKLENRSLISSE-IFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 +++ R +E I TEK G VE A+ + + E SY N I T EGG Sbjct: 239 EFVEYLDATRGQAITESIIYIDTEKNGVP---VEVAMQYNDSFSENVHSYVNNINTIEGG 295 Query: 329 THESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR +KKYAE + K I DD ++SV + EP+F GQTKTK Sbjct: 296 THLTGFRRALTRTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVAEPQFEGQTKTK 355 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIR 445 L + + V+ A+ HYL +NP +A +++ VI + R + V RKT + Sbjct: 356 LGNDEVSAAVDQAMSTALSHYLEENPRDAKAIVQKVILAATARHAARHAREMVQRKTVLS 415 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS E+F VEGDSAGG+AKQ R+R+ QA++PLRGKILN+ A Sbjct: 416 GAGLPGKLADCSSRDRSIAEIFFVEGDSAGGTAKQGRDRNFQAIMPLRGKILNIEKAQEH 475 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 ++ N++I ++ ALG ++ E LRY+K+IIMTDADVDG+HIA+L+LTFF+ Sbjct: 476 RMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFF 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 ++M +LIE H+++ +PPLF + +G + Y E+ + +I E K + + R+KGL Sbjct: 536 RKMKELIENGHVYIATPPLFLVKKGQQERYCWTEKERDEITAEMGK----GVHVQRYKGL 591 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM + QL ET M+ + R L +V I+ + + + LMG + R +FI++ A + Sbjct: 592 GEMNSHQLWETTMNPDTRILRKVTID----NAAEADRVFSMLMGDEVPPRREFIEKHAHY 647 Query: 681 IDDVGT 686 ++ Sbjct: 648 A-NIDA 652 >gi|225011911|ref|ZP_03702349.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A] gi|225004414|gb|EEG42386.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A] Length = 646 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 255/660 (38%), Positives = 383/660 (58%), Gaps = 24/660 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ + Y SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY Sbjct: 1 MSEENQNKQYSEDSIQALEGMEHVRMRPSMYIGDIGIRGLHHLVYEVVDNSIDEALGGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ + +T DNGRGIPV H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DEISVVINEDNSITTKDNGRGIPVGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L TV R ++ Q + RG L+P++ + GT +TFRPD + Sbjct: 120 HGVGVSCVNALSERLTATVYRDGKVWEQTYERGKALAPVKSIGDSKE-TGTLVTFRPDAQ 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + AYL+ +K + +E +K + E F GL ++ Sbjct: 179 IFTQTREYNYDTLSLRMRELAYLNKGIKISITDRRETDDKG-EFKSETFLSEKGLIEFIH 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 E+R I ++ + + EK G VE A+ + E Y N I T EGGTH +G Sbjct: 238 FLDESREAIIGDVISMEGEKNGVP---VEVAMIYNTSYSENLHSYVNNINTHEGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTSTLKKYADSSGLLDKLKFEIAGDDFREGLTAIISVKVGEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + ++YL +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VTSAVSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSGGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ E LRY KV+IM DADVDG+HI++L+LTFF++ M + Sbjct: 475 EEIRNIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE ++++ +PPL+ + +G K YA ++ + +++EF + R+KGLGEM A Sbjct: 535 LIESGYIYIATPPLYLVKKGQKKDYAWSDDQRDLLMQEFG----SGSSVQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ +RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 591 EQLWDTTMNPQERTLRKVTIDNGG----EADRVFSMLMGDEVPPRREFIEKNAIYA-NID 645 >gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDEGQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|84515342|ref|ZP_01002704.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53] gi|84510625|gb|EAQ07080.1| DNA topoisomerase IV subunit B [Loktanella vestfoldensis SKA53] Length = 652 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 346/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + D+Y+ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN Sbjct: 7 STTGPDDYNASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + +T+ DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHADHSVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR +F Q+FSRG+PL P++K +N+RGT +TF D +IF Sbjct: 127 VGASVVNALSDSMVVQVARNKELFEQRFSRGLPLGPIQKLGPTQNRRGTTVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARL K QSKAYL V+ W + E P + F+FPGGL YL+ Sbjct: 187 GS-QKFKPARLYKSIQSKAYLFSGVEIRWKTEINDGE---TPLEATFHFPGGLADYLKET 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L + + + F G + K G VEWAI W + I SYCNT+ T EGGTH +G Sbjct: 243 LGKSATYADKPFAGSVDFADKFNEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I +DLM ++S FIREP F GQTK +L S A Sbjct: 303 FWNAILKGIKGYGELANNKKAALITREDLMSGGCALVSCFIREPAFVGQTKDRLSSEIAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R E A+RD FD++L + A +L++++ R+EERL+RR+++E RK+A +KLRLPGKL Sbjct: 363 RMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLKRRQEKETARKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S K+ NQ+I Sbjct: 423 TDCTSKDRKGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLTTNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 NDLCEALGVGMGTKFNVDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDHGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG + VY D+ K+K++ + GKGKI++ RFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGARRVYVADDAEKEKMMAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV ++ D+ DT D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPATRKLIRVTVHDDV--PGDTADLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21] gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21] Length = 652 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 263/659 (39%), Positives = 380/659 (57%), Gaps = 21/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + N++ S+ Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY Sbjct: 2 SEENKNKSN-YSADNIQVLEGLEAVRKRPSMYIGDVGVKGLHHLVYEVVDNSIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V + + +TV DNGRGIP + K NKS LE+++T LHAGGKFD TY++SGG Sbjct: 61 CTDIHVIIHKDNSITVEDNGRGIPTGINKK-ENKSALEMVMTMLHAGGKFDKDTYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS L V R+ IF Q++++G PL ++ + ++ GT +TF PDP Sbjct: 120 LHGVGVSCVNALSTLLIAEVHREGKIFKQEYAQGKPLYDVKVIGET-DRTGTNVTFHPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + L + AYL+ ++ ++E E + EEFY GGL ++ Sbjct: 179 SIFTMTTTYSYDTLAGRLRELAYLNKGIRLTLLDEREEQEDGAL-RHEEFYSEGGLSEFV 237 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + NR + + + K+G VE A+ + + E SY N I T EGGTH + Sbjct: 238 KFLDGNRQPLIPDPIHVEGIKQGIP---VELALQYNDTYSENVHSYVNNINTIEGGTHVA 294 Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R LTR +K YA+ + + + I DD ++SV + EP+F GQTKTKL + Sbjct: 295 GFRRGLTRTLKAYADKSGLLKNLKVEITGDDFREGLTAVISVKVAEPQFEGQTKTKLGNN 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRL 449 + V+ A+ + YL +NP EA +++ V I R+ + V RKT + L Sbjct: 355 EVMGAVDVAVGEILGTYLEENPREAKAIVQKVIIAAQARAAARKARDMVQRKTVMGGSGL 414 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ N E+++VEGDSAGG+AKQ RNR QA+LPLRGKILNV A KI Sbjct: 415 PGKLADCANNDPAKCEIYLVEGDSAGGTAKQGRNREFQAILPLRGKILNVEKAMEHKIYE 474 Query: 510 NQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ ALG + E LRY ++IIMTDADVDG+HI +L+LTF+++ M Sbjct: 475 NEEIKNMFTALGVSIGTPEDAKALNLEKLRYHRIIIMTDADVDGSHITTLILTFYFRYMK 534 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEM 623 +LIE+ ++++ +PPL+ + +G + YA +E + ++ K GK + + R+KGLGEM Sbjct: 535 ELIERGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRYKGLGEM 594 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A QL +T M+ RTL +V I + LMG + R +FI+ A + Sbjct: 595 NAEQLWDTTMNPETRTLRQVSIENAAEC----DRVFSMLMGDEVAPRREFIERNAKYAK 649 >gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325] gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325] Length = 638 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 258/654 (39%), Positives = 371/654 (56%), Gaps = 20/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y+A I++LEGLE VR+RPGMYIG T K LHHL E++DN++DE +AG+ Sbjct: 1 MVEKKQMQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + ++ V DNGRGIP++ + K LE+ILT LHAGGKF Y++SGGL Sbjct: 61 DTITVAIEKDNWIRVEDNGRGIPIDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V R I S F RG + + + +K GT I F+ DP+ Sbjct: 120 HGVGASVVNALSTNLEAYVHRDGKIHSMMFERGDVVQGITVIGET-DKTGTTIRFKADPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + A+L+ + ++E EK E F + GGL Y++ Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDEREGQEKE-----ETFCYEGGLLEYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ + E E +G VE ++ + I SY N I T EGGTHESG Sbjct: 234 MLNENKDSLH-EAIYVHGEMEG---KEVEISMQYNTGYASNILSYANNINTHEGGTHESG 289 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + + K S+ DD+ V I+S+ P+F GQTKTKL + + Sbjct: 290 FKTALTRIINSYGKKNKLIKEKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + D +L++NP A ++E ++ S R+ +K RE RK A+ LPG Sbjct: 350 STITNKLFSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A ELF+VEGDSAGGSAK RN QA+LPL+GKILNV +K+ +N Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLSND 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ A+G + LRY K++IMTDADVDG+HI +LLLTFF++ M +LIE + Sbjct: 470 EVRSLITAVGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIEAGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF + G K Y H +E ++ +E++ K + R+KGLGEM A +L +T Sbjct: 530 VYIARPPLFGLKVGKKEYYCHTDEELKENIEKYAAD--KKYTVQRYKGLGEMNAEELWDT 587 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + +V I+ + + + LMG K + R KFI+E A + ++ Sbjct: 588 TMDPEHRLMYKVSIDD----AQRADAAFDTLMGEKVEPRRKFIEENALNVVNLD 637 >gi|320537025|ref|ZP_08037004.1| DNA gyrase, B subunit [Treponema phagedenis F0421] gi|320146100|gb|EFW37737.1| DNA gyrase, B subunit [Treponema phagedenis F0421] Length = 638 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 375/653 (57%), Gaps = 24/653 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y AS+I +LEGLE VR RPGMYIG T LHHL EV+DN +DE +AG+ + I V Sbjct: 2 TNSTYSASNITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGFCDRITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ N + V DNGRGIPV+ HP+ S LEI+LT LHAGGKFD +Y++SGGLHGVG+ Sbjct: 62 VLEKNDIVRVEDNGRGIPVDIHPQ-EGISALEIVLTKLHAGGKFDKGSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS + TV + QKF G+PL ++K +K GT I + DP IF + Sbjct: 121 SVVNALSTWMEATVYKDGAEHYQKFEIGVPLDSVKKI-STTDKHGTTIRWAADPAIFKET 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ + ++ P++ F F GG+ ++Q Sbjct: 180 TTYDFDVLATRLRELAFLNSNITIVMRDER-----LSTPKEATFAFEGGISHFVQYLHGT 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ +E + EK +E A+ + + + S+ N I T EGGTH G + AL Sbjct: 235 KQVLPAEPIYIEAEKNDII---MEIALQYNDGYNENLLSFVNDINTREGGTHLEGFKSAL 291 Query: 339 TRGIKKYAE-----LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 TR + ++ + + + + + +D+ ++S+ + EP+F GQTKTKL + D + Sbjct: 292 TRVMNEFLKKNSKLIKKLDKEEKLTGEDVRAGLTAVISIKVPEPQFEGQTKTKLGNSDVR 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V++ + + + QNP K+L + V E + RR + RK+ + LPGK Sbjct: 352 GIVDSFVNEKLTLFFEQNPAIIDKILEKTVSEATARIAARRAKEATRRKSGLDSFGLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E++IVEGDSAGGSAK+ R+ QA+LPL GK+LNV +K+ NN++ Sbjct: 412 LADCSLKDPKLCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRIDKVMNNEK 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ +LG + + +RY K+IIM DADVDG+HI +LLLTFF++ M +IE+ ++ Sbjct: 472 LQPIIASLGTGIGKDFNIDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPQIIEEGYV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL++I+ K Y +++E + ++L+E K + + R+KGLGEM +QL ET Sbjct: 532 YLAMPPLYKISYNKKEWYVYNDEERDQVLKEIGKENN--VAVQRYKGLGEMDGTQLWETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +R ++RV + + + + LMG + + R +FI+E A + ++ Sbjct: 590 MDPARRKMMRVTLPDAI----EADRIFSTLMGEEVEPRRQFIEENAVYA-NLD 637 >gi|313204151|ref|YP_004042808.1| DNA gyrase subunit b [Paludibacter propionicigenes WB4] gi|312443467|gb|ADQ79823.1| DNA gyrase subunit B [Paludibacter propionicigenes WB4] Length = 654 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 266/665 (40%), Positives = 389/665 (58%), Gaps = 21/665 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 A ++AS NY ASSI++LEGLE VR RP MYIG K LHHL EV+DN++DE + Sbjct: 2 SEEEKAKEAASANYGASSIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVYEVVDNSIDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ N I+V ++ N +TV+DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++ Sbjct: 62 AGHCNNIQVFINENNSITVIDNGRGIPVDMHEK-EGKSALEVVMTVLHAGGKFDKDSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+S VNALS + V V+R ++ Q++S GIP +P+++ T+ TF Sbjct: 121 SGGLHGVGVSCVNALSTYVRVEVSRNGKLYMQEYSCGIPKAPVQEIGTSTTNG-TKTTFL 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD IF + + L + A+L+ + + +++ + + E F+ GLK Sbjct: 180 PDDSIFIESI-YKYDILAGRLRELAFLNAGITLTLTDKRQLNDDG-SFKTEVFHSDEGLK 237 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ E R + + TEK G VE A+ + I SY N I T EGGT Sbjct: 238 EFVEYIDEAREPLIESVIHISTEKNGIP---VEIAMTYNTSYNENIHSYVNNINTIEGGT 294 Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R LTR +KKYAE ++ K I I DD ++S+ ++EP+F GQTKTKL Sbjct: 295 HLAGFRRGLTRTLKKYAEDSKMLEKLKIEISGDDFREGLTAVISIKVQEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + +V+ A+ + +YL +NP A ++E VI + R RK RE+ ++ + + Sbjct: 355 GNNEVMGSVDMAVGEALGNYLEENPKAARIIVEKVILAATARYAARKAREMVQRKSPLSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC+ ELF+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A K Sbjct: 415 GGLPGKLADCADKDPEKCELFLVEGDSAGGTAKQGRSRQFQAILPLRGKILNVEKAMQHK 474 Query: 507 IRNNQQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + +++I ++ ALG ++ + LRY KVIIMTDADVDG+HIA+L++TFF++ Sbjct: 475 VLESEEIRNIYTALGVTIGTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFR 534 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M +LIEQ +L++ +PPL+ +G Y E +Q +E++ I R+KGLG Sbjct: 535 HMKELIEQGYLYIATPPLYLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM QL +T M+ RTL +V I + + + LMG R +FI++ A++ Sbjct: 595 EMNEIQLWDTTMNPEHRTLRQVNIE----NAAEADHVFSMLMGDDVAPRRQFIEQNATYA 650 Query: 682 DDVGT 686 + Sbjct: 651 K-IDA 654 >gi|189345573|ref|YP_001942102.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245] gi|189339720|gb|ACD89123.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245] Length = 643 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 259/659 (39%), Positives = 375/659 (56%), Gaps = 25/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 +Y A++I+IL+G+E VRMRP MYIG + LHHL E++DN++DE + GY Sbjct: 2 PDTGTQTPSSYLATNIQILDGIEHVRMRPAMYIGDIHTRGLHHLVYEIVDNSIDETLGGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V L+ +G +TV+D GRGIPV+ HP+ KS LE+++T + AGGKFD Y++SGG Sbjct: 62 NDYIFVGLNPDGSVTVIDRGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKGAYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS+ V V R + Q++ RG+P +++ + RGT+ TF+PD Sbjct: 121 LHGVGASVVNALSEWCEVEVYRDGKAYFQRYERGVPQGDVKEIGP-SDLRGTKTTFKPDH 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F ++ + A+L+ ++ +E F++ GGL ++ Sbjct: 180 EIFKT-TEFRRDIIIDRMRELAFLNKTLRITVQD--------SDGNEEVFHYEGGLNEFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q +NR + E E+ T VE A+ + + + SY N I T EGGTH + Sbjct: 231 QFTDQNRIKLLKEPVYIYGERDSTI---VELALQYNDSYQENVFSYVNNINTHEGGTHVT 287 Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + YA+ + + + DD ++SV + EP+F GQTKTKL + Sbjct: 288 GFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNS 347 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + Q VE+ + + +L NP ++E V + R RK +E RK+ + L Sbjct: 348 ETQSIVESIVNEQLAEFLESNPNVLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ Sbjct: 408 PGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLE 467 Query: 510 NQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE Sbjct: 468 NEEIKTIILALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIE 527 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLAS 626 +F+ PPL+ + G YA D++ + ++E +K GK + I R+KGLGEM Sbjct: 528 AGKVFIAQPPLYLVKSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPE 587 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD R+LL+V + + + + LMG K + R FI++ A ++ + Sbjct: 588 QLWSTTMDPAHRSLLQVSVENAM----EADKVFSTLMGDKVEPRRDFIEKNARYVRRLD 642 >gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1] Length = 644 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 390/658 (59%), Gaps = 22/658 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D+ QSA ++Y+A+ I++LEGLE VR RPGMYIG T + LHHL +EV+DN++DE + Sbjct: 2 DNRTQGMQSAINDYNANKIKVLEGLEAVRKRPGMYIGDTGPRGLHHLVNEVVDNSIDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ I+V++ + +TV D+GRGIP + HP + T E++LT LHAGGKF+ Y + Sbjct: 62 AGFCTRIDVTIHKDESVTVQDDGRGIPTDPHPSN-GRPTCEVVLTRLHAGGKFEQGAYSV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+S VNALS+ VT+AR +Q+F RG+P++ L + V + +GTRI + Sbjct: 121 SGGLHGVGVSAVNALSEWFEVTIARNGMERTQRFERGVPVTDLSEGVPV-DWQGTRIHYL 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD +IF D L A+L+ V+ + ++ + ++F GG+ Sbjct: 180 PDKEIFEDVHH-SLETLKSRFMELAFLNAGVRIFVTDERSSESRE-------YHFEGGVS 231 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++Q +R+ + + E+ V+ A+ + +E I +Y N I T EGGT Sbjct: 232 AFVQYLNRDRTTLFAPPVVISGERNDI---KVDMALQYNDEYQERILTYANLIHTVEGGT 288 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GLR ALTR + + A + N + ++ DDL +LSV + EP+F GQTKTKL Sbjct: 289 HLMGLRQALTRALNEAARSGKLLNDKEDNLTGDDLKEGLTCVLSVKLVEPQFEGQTKTKL 348 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 + D + V++ + + + + P +++ + R +K +E+ RK A+ + Sbjct: 349 GNSDVRGAVDSVVYEGLLSVIEERPDIVRPIVDKALRARRAREAAKKAKELVRKGAMTGM 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV A K+ Sbjct: 409 NLPGKLADCSSKTPENSEIYIVEGDSAGGSAKQARDRTFQAILPLRGKILNVEKAQEHKM 468 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ ALGC +++ LRY K+IIMTDADVDGAHI++LLLTFFY+ M +L+ Sbjct: 469 LQNREIQTIITALGCGIGTEFNATRLRYHKIIIMTDADVDGAHISTLLLTFFYRHMPELL 528 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 + +++L PPL+R+ +G + Y + E+ ++ ++ K+ + R+KGLGEM Q Sbjct: 529 TEGYIYLAQPPLYRVQRGKQVHYCYTEKELRQHVD--GAPDPDKVGVQRYKGLGEMNPEQ 586 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L T MD R L +VE++ DL + + LMG + + R +FI A+ +V Sbjct: 587 LWMTTMDPANRILKKVELDDDL----LADEYFDILMGERVEPRREFITTNANSAKNVD 640 >gi|90419643|ref|ZP_01227553.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1] gi|90336580|gb|EAS50321.1| type IIA topoisomerase [Aurantimonas manganoxydans SI85-9A1] Length = 684 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 395/686 (57%), Positives = 513/686 (74%), Gaps = 14/686 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D DLFS + + + K A AN Y A+ I +LEGLEPVR Sbjct: 11 MSD---DLFSGNAARQPRAPKPSAKPR------AAANLQEPSEYTAADIEVLEGLEPVRR 61 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDN+MDE AG+AN IEV+L+ +G L+V DNGRGIP++ Sbjct: 62 RPGMYIGGTDEKALHHLFAEVIDNSMDEATAGHANFIEVALEADGTLSVADNGRGIPIDP 121 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPK+ +KS LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALS+ L V VAR ++ Sbjct: 122 HPKYRDKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSETLEVEVARNRRLY 181 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q +SRG + LE+ ++N+RGTRI FRPDP+IFG A F RLL M +SKAYL G Sbjct: 182 RQTYSRGHAQTGLEEIGDIQNRRGTRIRFRPDPEIFGAGARFRPERLLAMARSKAYLFGG 241 Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W+CD + +P ++ F+FPGGLK YL L+ + ++S+IF G+TEK + Sbjct: 242 VEIRWACDPSLLPADGSVPSRDTFHFPGGLKDYLDGTLDKQGRVTSQIFAGRTEK-VSGH 300 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 G VEWA++W ++ + SYCNTI T EGGTHE+GLR L RG+K +AE++ NKRA I Sbjct: 301 GAVEWAVSWTADDGFVRSYCNTIPTPEGGTHEAGLRSVLLRGLKAFAEVSGNKRAAVITG 360 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+M++A +LSVFIREPEF GQTK +L + +AQR VE ++RD FD +L +P +A +L+ Sbjct: 361 DDIMLTASAMLSVFIREPEFVGQTKDRLATAEAQRIVEQSMRDSFDIWLASSPQDAARLI 420 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 +WV+ER++ERLRRR+++EV+RK+A RKLRLPGKLADCSQ+ + E+FIVEGDSAGGSAK Sbjct: 421 DWVVERADERLRRRQEKEVSRKSATRKLRLPGKLADCSQSGSVNAEIFIVEGDSAGGSAK 480 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QAR+R QA+LPLRGKILNVASAG EK NQQ+ DL+QALGC TRS+YREEDLRYE+VI Sbjct: 481 QARDRKVQAILPLRGKILNVASAGREKFGANQQLADLIQALGCGTRSKYREEDLRYERVI 540 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFYQEM +LI HLFL PPL+++TQG K+ YA D+ +++ Sbjct: 541 IMTDADVDGAHIASLLITFFYQEMPELIRGGHLFLAVPPLYKLTQGGKTAYARDDADRER 600 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++ K G+GK+EISRFKGLGEML +QLKET MD KRTLLRV +++ + T ++ Sbjct: 601 LIARDFK-GRGKVEISRFKGLGEMLPAQLKETTMDPRKRTLLRVHMDETPEAG--TSGAV 657 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG K + RF+F+Q+RA+F++D+ Sbjct: 658 SALMGNKPEARFRFLQDRAAFVEDLD 683 >gi|33864631|ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH 8102] gi|33632154|emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102] Length = 655 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 263/654 (40%), Positives = 377/654 (57%), Gaps = 16/654 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 4 ASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L +G ++ DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHG Sbjct: 64 ILVTLGEDGSASISDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---RNKRGTRITFRPDP 213 VG+SVVNALS+ + VTV RQ + Q+F RG + L +++ + GT + F+PD Sbjct: 123 VGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLASEDQPASEAGETGTTVCFKPDI 182 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLKTY 272 +IF FD A L + AYL+G V+ + ++E A + G +E +++ GG+K Y Sbjct: 183 EIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARNEVGEAHEETYFYEGGIKEY 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 + + + +I +EK G + + I + N I T +GGTH Sbjct: 243 VAYMNTEKDALHPDIIYVNSEKDGV-QVEAALQWCSDAYSDSILGFANNIRTVDGGTHIE 301 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL + Sbjct: 302 GLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + V+N + + +L NP +LE I+ R+ RE V RK+ + L Sbjct: 362 EVRGIVDNLVGEGLSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 422 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 481 Query: 510 NQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ L+E Sbjct: 482 NTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKALVE 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ +G Y ++E QK L+ F + K I RFKGLGEM+ QL Sbjct: 542 GGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGE--KANYTIQRFKGLGEMMPKQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD RT+ RVEI L + LMG K R +FI+ ++ +D Sbjct: 600 WETTMDPTTRTMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|260062006|ref|YP_003195086.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501] gi|88783568|gb|EAR14739.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501] Length = 648 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 259/660 (39%), Positives = 380/660 (57%), Gaps = 22/660 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSEEVKGKSYSADSIQALEGIEHVRMRPSMYIGDIGVRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ + +TV DNGRGIPV+ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTISVTINEDNSITVEDNGRGIPVDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L TV R+ I+ Q++ RG L P++ + GT +TF PDP+ Sbjct: 120 HGVGVSVVNALSKHLKATVYREGKIWEQEYERGRTLYPVKSTG-TSDLNGTIVTFHPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + AYL+ V + + ++ G E FY GLK +++ Sbjct: 179 IFQQTIEFSYDTLSNRMRELAYLNKGVAITITDRR--VKEKGEYLSERFYSEEGLKEFIR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 NR + +++ + + EK VE A+ + E Y N I T EGGTH SG Sbjct: 237 FLDGNREPLIADVISMEGEKNDIP---VEVAMVYNTSYTENLHSYVNNINTHEGGTHLSG 293 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K + DD I+SV + EP+F GQTKTKL + + Sbjct: 294 FRRGLTTTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNRE 353 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 V A+ + +YL ++P +A +++ VI ++ R K RE+ ++ + LP Sbjct: 354 VSAAVSQAVSEMLTNYLEEHPDDAKTVVQKVILAAQARHAAAKAREMVQRKNPMSGGGLP 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+F+VEGDSAGG+AK R+R+ QA+LPLRGKILNV A K+ N Sbjct: 414 GKLADCSDQDPERCEIFLVEGDSAGGTAKMGRDRNTQAILPLRGKILNVEKAMQHKVFEN 473 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KVIIM DADVDG+HI +L+LTFF++ M + Sbjct: 474 EEIKNIYTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIETLILTFFFRYMRE 533 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE H+++ +PPL+ + +G+K YA +++ + I+EE G I R+KGLGEM A Sbjct: 534 LIEGGHVYIATPPLYLVKKGSKKRYAWNDKERDAIVEELSTSS-GSPGIQRYKGLGEMNA 592 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ S + LMG + R +FI+ A + ++ Sbjct: 593 EQLWDTTMNPEFRTLRQVTIDNATES----DRIFSMLMGDEVPPRREFIERNAVYA-NID 647 >gi|269118649|ref|YP_003306826.1| DNA gyrase subunit beta [Sebaldella termitidis ATCC 33386] gi|268612527|gb|ACZ06895.1| DNA gyrase, B subunit [Sebaldella termitidis ATCC 33386] Length = 642 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 265/651 (40%), Positives = 385/651 (59%), Gaps = 17/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SDNY+A SI +LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG+ + I+V Sbjct: 2 SDNYNAESITVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSVDEALAGFCDTIKVR 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + V+DNGRGIPVE H K KSTLE++LT LHAGGKF+N Y++SGGLHGVG+S Sbjct: 62 VLEDNIIEVIDNGRGIPVEMHEKM-GKSTLEVVLTVLHAGGKFNNDNYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ L + + ++ QK+ RG+P +++ + + GT I F+ D +IF Sbjct: 121 VVNALSETLEAIITKDGKVWYQKYHRGVPEEDIKQIGEAPEDAHGTTIRFKADGEIFETL 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D LL + AYL+ ++ S +++ + P+ ++ +F GG++ +L ++ Sbjct: 181 -EYDYEILLTRLKEMAYLNKGLRIILSDERQKDK----PKTDDLHFEGGIRDFLSEIADD 235 Query: 280 RSLISSEIFTGK-TEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVA 337 ++ I+ E R VE A+ + + + S+ N I T EGGTH SG R A Sbjct: 236 ERVLDDIIYMDDSVELDNKKRVEVEIAMTYTISQREMVYSFVNNINTHEGGTHVSGYRTA 295 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + + ++ + S D+ V ILS+ I EP+F GQTKTKL + + Sbjct: 296 LTRVLNEISKQMGLVKDKDGSFQGSDVREGLVAILSIKIPEPQFEGQTKTKLGNSEITGV 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKLA 454 V + YL +P EA+ ++E ++ + R +K RE+ RK+++ LPGKLA Sbjct: 356 VSGIVGSSLKMYLEDHPKEASNIIEKILMSKKAREAAKKARELVLRKSSLEVGSLPGKLA 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS A E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG + N +I Sbjct: 416 DCSSKDASECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGIGRALENAEIR 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + E LRY K+IIMTDADVDGAHI +L+LTFFY+ + +LI + H+++ Sbjct: 476 AMITAFGAGFGDEMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRHLRELINEGHIYI 535 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ G + Y + +E Q + + + K I R+KGLGEM QL ET MD Sbjct: 536 AQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKR-YGIQRYKGLGEMNPEQLWETTMD 594 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + N LMG K + R +FI+E A ++ ++ Sbjct: 595 PEVRTLLKVSLEDATY----ADKMFNVLMGDKVEPRRQFIEEHAQYVRNLD 641 >gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406] gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 652 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 374/656 (57%), Gaps = 21/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + Y A SI++LEGLE VR RP MYIG K LHHL EV+DN++DE +AG+ Sbjct: 5 TEQNAAGYSADSIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVWEVVDNSIDEALAGHCTD 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V ++ N +TV DNGRGIP K+ KS LE++LT LHAGGKFD +Y++SGGLHG Sbjct: 65 ITVEINENNSITVTDNGRGIPTGVIAKY-GKSALEVVLTVLHAGGKFDKDSYKVSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS ++ VTV + Q++ +GIP +++ + + GT++ F PD IF Sbjct: 124 VGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGE-SDLHGTKVQFLPDDTIF 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + ++L+ ++ + + G E E F+ GGL+ ++ Sbjct: 183 TS-SEYKYETIANRLRELSFLNKGIRITLQDHR-QVDAEGKSEIEMFHSEGGLREFVDYL 240 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 R + +++K VE A+ + E SY N I T EGGTH +G R Sbjct: 241 DSTREKLIPTPLYMESDKGPIP---VEVAMLYNTSYSENVFSYVNNINTIEGGTHVAGFR 297 Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR +K YA+ + K + + DD ++SV ++EP+F GQTKTKL + D Sbjct: 298 RALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVM 357 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V+ + + + YL +NP EA +++ VI ++ R RK RE+ RK + LPGK Sbjct: 358 GAVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVLSGSGLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS++ EL++VEGDSAGGSAKQ R+R A+LPLRGKILNV A +I N + Sbjct: 418 LADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQEHRIYENDE 477 Query: 513 IMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I +++ ALG ++ LRY KVIIMTDAD+DG+HI +L+LTFF++ M LI Sbjct: 478 IKNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFFFRYMRALI 537 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLAS 626 + H+++ PPL+ + +G + Y EE ++ ++E K GK + I R+KGLGEM Sbjct: 538 DGGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL T MD KR+L +V + S + + LMG + R FI++ A + Sbjct: 598 QLWSTTMDPEKRSLKQVSVE----SAAEADHLFSMLMGDEVAPRRDFIEKNARYAK 649 >gi|86137425|ref|ZP_01056002.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193] gi|85825760|gb|EAQ45958.1| DNA topoisomerase IV subunit B [Roseobacter sp. MED193] Length = 652 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 348/652 (53%), Positives = 451/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPNDETYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVTLHADYSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VA+ +F Q+FSRG+PL P+EK NKRGT +TF D +IF Sbjct: 127 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNKRGTFVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F RL + +SKAYL V+ W + + E P + F+FPGGLK YL Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDKE---TPVEATFHFPGGLKDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A SI DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGELVGNKKAGSITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L++++ R+EERLRR++++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR+NQA+LPL+GKILNV A S KI N +I Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRNNQALLPLKGKILNVLGAASNKIGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG T +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + K +E+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R L+RV I++D +T D + +LMG K + R+++IQE A F++++ Sbjct: 602 DPNTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRYQYIQENAKFVEELD 651 >gi|154491922|ref|ZP_02031548.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC 43184] gi|154088163|gb|EDN87208.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC 43184] Length = 651 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 383/658 (58%), Gaps = 21/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ S Y A SI++LEGLE VR RP MYIG T EK LHHL EV+DN++DE +AG+ + Sbjct: 6 KNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTSEKGLHHLVYEVVDNSIDEALAGFCTQV 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + ++V D+GRGIPV+ H K S LE++LT LHAGGKFD +Y++SGGLHGV Sbjct: 66 DVVINEDNSISVTDDGRGIPVDIHEK-EGVSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L V R + Q+FS G PL +E + + GT I F+PD IF Sbjct: 125 GVSCVNALSTYLRAEVRRDGKVHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPDGSIFS 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + + + + E + E F GLK +++ Sbjct: 184 VT-EYKYEILAARLRELAFLNAGITLSLTDKRVVKEDG-SYKSEIFRSEEGLKEFVRYID 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336 ++ + ++ TEK+G VE A+ + N + SY N I T EGGTH +G R Sbjct: 242 RSKEQLIPDVIHIVTEKQGIP---VEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR +KKYA+ ++ K + I DD ++S+ + EP+F GQTKTKL + + Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V+ A+ + +YL ++P EA +++ VI + R+ + V RK+ + LPGKL Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A ELF+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ +++I Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478 Query: 514 MDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ +A+G ++ + LRY KVIIMTDADVDG+HIA+L+LTFF++ M LIE Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +++L +PPL+ +G Y ++ +Q ++++ + +I R+KGLGEM QL Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQIHTQRYKGLGEMNDHQL 598 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ RTL ++ I+ S + LMG R +FI+E A++ ++ Sbjct: 599 WDTTMNPENRTLKQITID----SAAEADQIFAMLMGEDVGPRREFIEENATYA-NIDA 651 >gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland] gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland] gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613] Length = 637 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 374/653 (57%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS++ V V R+ I+ Q+F RGI + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQRFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + + A+L+ +K + ++ +KE F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAQRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDKNKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRAINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LADCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+ Sbjct: 469 IRAMITAFGAGIGKEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + + L E I R+KGLGEM QL +T Sbjct: 529 YIAQPPLYRIFKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWDTT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V I + + LMGTK + R +FI+ A + ++ Sbjct: 588 MDPEHRTLLQVTIEDAMV----ADEIFTILMGTKVEPRREFIENNADKVVNLD 636 >gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 640 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 255/655 (38%), Positives = 380/655 (58%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + ++NY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTENYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DKIEVIIEKDNWIRVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS++L V V R N I++Q + RGIP L+ + GT I F+ DP+ Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNNKIYNQAYKRGIPQYDLKVIGET-EHNGTEIRFKADPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + L K + A+L+ ++ +++ ++ +++ GG+K+Y++ Sbjct: 179 IFTETTTYQYEVLQKRIRELAFLNKGIQISLRDERDEDNI----REDSYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333 EN+ + E K VE AI + SY N I T EGGTHE G Sbjct: 235 LLNENKEPLFDEPVYVHDRKDDV---EVEIAIQYNSGFTTNLLSYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y + + +D I+S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNSYGTKSGLIKEDKERLSGEDTREGMTAIVSIKHEDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + + +L ++P A ++E + S R+ +K RE RK+A+ LP Sbjct: 352 VRQIVDRLSAEDMERFLYEHPQVARIIIEKGLMASRARIAAKKAREVTRRKSALEVSSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV + ++I NN Sbjct: 412 GKLADCSSKNPEESEIFLVEGDSAGGSTKLGRDSRTQAILPLRGKILNVEKSRLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRSMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPLF++TQG + Y +E +K+ E K K ISR+KGLGEM A QL E Sbjct: 532 YVYIAQPPLFKLTQGKQKYYVFNERELEKLKSELKPT--PKWSISRYKGLGEMDADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R++L+V + + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPEHRSMLQVTLEDAI----EADTTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus] Length = 627 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 265/644 (41%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN +DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNCIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPSVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQGAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 631 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 377/649 (58%), Gaps = 22/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNAL EL V V R I QK+ RG+P + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALPTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE +++ Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-AQ 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 529 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 586 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V + + + ++ LMG K + R FIQE A ++ ++ Sbjct: 587 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKYVKNLD 631 >gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium spiritivorum ATCC 33861] gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium spiritivorum ATCC 33861] Length = 652 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 263/662 (39%), Positives = 383/662 (57%), Gaps = 21/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AGY Sbjct: 2 SEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEAVAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V++ ++V DNGRGIP + K NKS LE+++T LHAGGKFD TY++SGGL Sbjct: 62 NDILVTIHEGNSISVQDNGRGIPTGINKK-ENKSALELVMTVLHAGGKFDKDTYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L V R IF Q++ +G P ++ + + GT +TF PDP+ Sbjct: 121 HGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGE-SERTGTTVTFFPDPE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ L + A+L+ ++ ++EI + K+ F+ GGL+ +++ Sbjct: 180 IFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDG-SFRKDVFFSEGGLQEFVK 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 NR + S + K+G VE A+ + + E SY N I T EGG+H +G Sbjct: 239 FLDGNRQSLISNPIYVEGIKQGVP---VELALQYNDTYSENVHSYVNNINTIEGGSHVAG 295 Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +KKYAE + + + + DD ++SV + EP+F GQTKTKL + + Sbjct: 296 FRRGLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + YL +NP EA +++ VI R+ + V RKT + LP Sbjct: 356 VMGAVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS N H E+F VEGDSAGG+AKQ R+R QA++PLRGKILNV A KI N Sbjct: 416 GKLADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYEN 475 Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG + E LRY K++IMTDADVDG+HIA+L+LTF+++ M + Sbjct: 476 EEIKNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKE 535 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 LIE ++++ +PPL+ + +G +S YA EE + + ++ K GK + + R+KGLGEM Sbjct: 536 LIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRYKGLGEMN 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL +T M+ RTL +V I+ + LMG + R +FI++ A + + Sbjct: 596 AEQLWDTTMNPEHRTLRQVTIDNAAEC----DRIFSMLMGDEVAPRREFIEKNARYAK-I 650 Query: 685 GT 686 Sbjct: 651 DA 652 >gi|51891144|ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863] gi|51854833|dbj|BAD38991.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863] Length = 638 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 379/654 (57%), Gaps = 23/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N ++ Y I++LEGLE VR RPGMYIGGT ++ LHHL E+IDNA+DE +AG+ + Sbjct: 2 NTHGTEQYTGEQIQVLEGLEAVRRRPGMYIGGTSQRGLHHLIWEIIDNAVDERLAGFCDK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L +G ++V DNGRGIPV+ HPK ST+E + T LHAGGKF Y++SGGLHG Sbjct: 62 IVVTLHSDGSVSVSDNGRGIPVDIHPK-TGISTVETVYTMLHAGGKFGGGAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG +VVNALS +L++ V + ++ +F+ G ++ + GT + F PDP+IF Sbjct: 121 VGAAVVNALSRKLYIQVKQNGGVYEVEFANGGKTLYPLRRVGDTKEHGTYVRFWPDPEIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD+ ++ + A+L+ + + +K AE F + GL+T++Q Sbjct: 181 ESV-EFDSEAIVTRLRDTAFLNQGLFIQFIDEKAGAE-------YRFKYNEGLQTFVQYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +R + ++ K T +E AI + + I S+ N I T EGGTHE+GL+ Sbjct: 233 NRSREPLHAKPIYVF---KATDTQEMELAIQYTDAYSENILSFANNIRTVEGGTHETGLK 289 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ILSV ++EP+F GQTKTKL S + + Sbjct: 290 TALTRVINSYARKYKLLKDNEDNLSGEDIREGMTAILSVKLQEPQFEGQTKTKLGSSEME 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V A+ + +L +NP A +++E + + R RK RE V RK+A+ LPGK Sbjct: 350 TFVAAAVSEGLSDFLEENPAIAKRIVEKALSAARAREAARKARELVRRKSALEITALPGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC+ +ELF+VEGDSAGGSAK R+R QAVLPLRGKILNV A +KI +N++ Sbjct: 410 LTDCTSRDPSESELFLVEGDSAGGSAKMGRDRRIQAVLPLRGKILNVEKARLDKILSNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + RY KVIIMTDADVDG+HI +LLLTFF++ M LIE +L Sbjct: 470 IRTLITAVGAGIGDDFDISKCRYHKVIIMTDADVDGSHIRTLLLTFFFRFMRPLIEAGYL 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ SPPL+ I +G + YA+ E+ K +++ R+KGLGEM QL ET Sbjct: 530 YIASPPLYMIRKGKQVYYAYSEQEKDQVIARIGGVTDKP---QRYKGLGEMNPEQLWETT 586 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 MD +KR L +V + + LMG K + R +FIQ A + ++ T Sbjct: 587 MDPSKRILYKVTMEDAAEATA----LFETLMGEKVEPRREFIQRNAHLVQNLDT 636 >gi|328949382|ref|YP_004366719.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489] gi|328449706|gb|AEB15422.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489] Length = 641 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 248/651 (38%), Positives = 369/651 (56%), Gaps = 23/651 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A SI++L+GLE VR RPGMYIG T LHHL EV+DN++DE +AGY I V+L Sbjct: 6 NQYGAGSIQVLKGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNSIDEAMAGYCTQITVAL 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV+ HP + S LE++LT LHAGGKFD S Y++SGGLHGVG+S Sbjct: 66 EKDDICRVEDNGRGIPVDIHP-TEHISALELVLTRLHAGGKFDKSNYKVSGGLHGVGVSC 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS + V + + QK++ GIP S +E GT I ++ D IF + Sbjct: 125 VNALSVWMEAFVNKDGKRYHQKYAEGIPKSKVECIGDT-ELHGTTIRWKADASIFTETTT 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + A+L+ + + ++ P++ F F GG+K Y+ E + Sbjct: 184 YNFDVLSTRLRELAFLNPGITIIFRDER-----LENPKEVVFKFEGGIKHYVSYLNEGKK 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +I E E+ +E A+ + + I SY N I T EGGTH G ++ALT Sbjct: 239 IIPEEPIYINGEENDVI---IELAMQYNDSYSENIFSYVNDINTREGGTHLDGFKIALTV 295 Query: 341 GIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 + K+ E + + + DD+ + ILS+ I EP+F GQTKTKL + + + Sbjct: 296 VLNKFLEKNEKLLKKLDKDEKLTGDDVRVGLTAILSLKIPEPQFEGQTKTKLGNSEVRGY 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ +++ + QNP T +LE + E + R+ + RK I LPGKL+ Sbjct: 356 VDSLVKEKLTLFCEQNPQITTMILEKAVGEAAARIAARKAKDSARRKNNIDSFGLPGKLS 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS A E++IVEGDSAGGSAK+ R+ QA+LPL GK+LNV ++K+ NN+++ Sbjct: 416 DCSSKNAAECEVYIVEGDSAGGSAKKGRDAKTQAILPLWGKMLNVEKVRADKVVNNEKLQ 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M DLIE+ +++L Sbjct: 476 PVIASLGAGFGKDFNIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMPDLIEKGYVYL 535 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLF+I G + +Y + +E + LE+ + K ++ R+KGLGEM +QL +T M+ Sbjct: 536 AMPPLFKIEIGKQKIYVYSDEERDAELEKLG-DKREKADVQRYKGLGEMDGNQLWDTTMN 594 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + V I + + MG + + R KFI+E A + ++ Sbjct: 595 PETRRMKVVTIPDAV----AADRIFSICMGEEVEPRRKFIEENAVYA-NLD 640 >gi|209549430|ref|YP_002281347.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535186|gb|ACI55121.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 704 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 444/706 (62%), Positives = 541/706 (76%), Gaps = 27/706 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEK----------------------LKKSGEIPDSPAFANQSA 40 DDS DLFS +P + + S S S Sbjct: 2 DDSNDLFSGMPLSEKREEAQKPAAAAERPPVAAAPAAAPPAAGAPSAAGASSRPAPTTSN 61 Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV Sbjct: 62 ADEYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVY 121 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 LD G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+S Sbjct: 122 LDLEGYLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVS 181 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD+L V VAR ++ Q+FSRG+P LE+ V N+RGTR+ F PDP+IFGD Sbjct: 182 VVNALSDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHM 241 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FDAAR+ +M +SKAYL G V+ WSC++ + E +P+K F+FPGGLK YLQ + Sbjct: 242 KFDAARVFRMARSKAYLFGGVEIRWSCEQGVLPEGSEVPDKAVFHFPGGLKDYLQATMGK 301 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ EIF GKTEK + G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT Sbjct: 302 EFTVTREIFAGKTEK-TSGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALT 360 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +G+K YAELTQNKRA I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENA Sbjct: 361 KGLKAYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENA 420 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 LRDPFDHYL NP E+ KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN Sbjct: 421 LRDPFDHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQN 480 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQ+ DL+QA Sbjct: 481 TAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQA 540 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LGC TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL Sbjct: 541 LGCGTRSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPL 600 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 ++ITQG+KS YA D+ H+ ++++ K GK K+EISRFKGLGEM+ +QLKET MD +KRT Sbjct: 601 YKITQGSKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRT 659 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V I++ + T+ +++ LMGTK + RF+FIQERA+F +++ Sbjct: 660 LLKVLIDEV--DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 703 >gi|323694887|ref|ZP_08109037.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673] gi|323500977|gb|EGB16889.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673] Length = 637 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 252/649 (38%), Positives = 380/649 (58%), Gaps = 20/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ + IEV + Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTSMRGLHHLVYEIVDNAVDEALAGFCDTIEVQI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV D+GRGIPV+ K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 63 NEDNSITVEDDGRGIPVDIQKKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS+ L V + ++ ++ Q++ RG + PL + + +K GT++TF PD IF + Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVEGECPPDKHGTKVTFLPDKDIFEETV 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ ++ D++ +++ F++ GG+K ++ ++ Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRIVLRDDRD------NKKEKVFHYEGGIKEFVTYLNKSN 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + + K+ + VE A+ + I ++ N I T EGGTH +G + ALT Sbjct: 235 EKLYAPVIYCEGTKEQVY---VEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291 Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + +D+ I+SV I EP+F GQTK KL + +A+ V+ Sbjct: 292 KTFNDYARKNKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVD 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + ++L QNP A + E ++ + R+ + RK+ + + LPGKLADC Sbjct: 352 AVVSEQLTYFLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A E++IVEGDSAGGSAK+ARN+SNQA+LPLRGKILNV A ++I N +I + Sbjct: 412 SDKNAENCEIYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI Q H++L Sbjct: 472 ITAFGTGIHEDFDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + + YA+ +E IL E + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV I+ + + + LMG + + R +FI+ A ++ ++ Sbjct: 590 RRILLRVMIDN--ETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLD 636 >gi|323486745|ref|ZP_08092064.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum WAL-14163] gi|323399884|gb|EGA92263.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum WAL-14163] Length = 637 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 252/649 (38%), Positives = 379/649 (58%), Gaps = 20/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AG+ + IEV + Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTSMRGLHHLVYEIVDNAVDEALAGFCDTIEVQI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV D+GRGIPV+ K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 63 NEDNSITVEDDGRGIPVDIQKKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS+ L V + ++ ++ Q++ RG + PL + +K GT++TF PD IF + Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVDGECPPDKHGTKVTFLPDKDIFEETV 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ ++ D++ +++ F++ GG+K ++ ++ Sbjct: 182 -YDYDTLKIRLRETAFLTKNLRIVLRDDRD------NKKEKVFHYEGGIKEFVTYLNKSN 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + + K+ + VE A+ + I ++ N I T EGGTH +G + ALT Sbjct: 235 EKLYAPVIYCEGTKEQVY---VEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALT 291 Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + YA + + +D+ I+SV I EP+F GQTK KL + +A+ V+ Sbjct: 292 KTFNDYARKNKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVD 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + ++L QNP A + E ++ + R+ + RK+ + + LPGKLADC Sbjct: 352 AVVSEQLTYFLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A E++IVEGDSAGGSAK+ARN+SNQA+LPLRGKILNV A ++I N +I + Sbjct: 412 SDKNAENCEIYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + E LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI Q H++L Sbjct: 472 ITAFGTGIHEDFDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + + YA+ +E IL E + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV I+ + + + LMG + + R +FI+ A ++ ++ Sbjct: 590 RRILLRVMIDN--ETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLD 636 >gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella moribillum M424] gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella moribillum M424] Length = 643 Score = 621 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 258/654 (39%), Positives = 372/654 (56%), Gaps = 20/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y+A I++LEGLE VR+RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 6 MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSSRGLHHLVWEIVDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V+++ + ++ V DNGRGIP++ + K LE+ILT LHAGGKF Y++SGGL Sbjct: 66 NTITVAIEKDNWIRVEDNGRGIPIDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V R I S KF RG + + + +K GT + F+ DP+ Sbjct: 125 HGVGASVVNALSTNLEAYVHRDGKIHSMKFERGEVVQGITVIGET-DKTGTTVRFKADPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + A+L+ + ++E EK E+F + GGL Y++ Sbjct: 184 IFQETTVYEYDILRSRIRELAFLNKGITIVLKDERENQEKE-----EDFCYEGGLLEYVE 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 EN+ + E E +G VE ++ + SY N I T EGGTHESG Sbjct: 239 MLNENKDALH-EAIYVHGEMEG---KEVEISMQYNTGYSSNILSYANNINTHEGGTHESG 294 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + + K ++ DD+ V I+S+ P+F GQTKTKL + + Sbjct: 295 FKTALTRIINAYGKKNKLIKEKETLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + D +L++NP A ++E ++ S R+ +K RE RK A+ LPG Sbjct: 355 STITNKLFSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A ELF+VEGDSAGGSAK R+ QA+LPL+GKILNV +K+ ++ Sbjct: 415 KLADCSSKDAAECELFLVEGDSAGGSAKLGRDSKFQAILPLKGKILNVEKVRIDKVLSSD 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ A+G + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI+ + Sbjct: 475 EIRSLITAVGMGIGETLNMDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGY 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+ + G K Y H EE ++ +EEF G K + R+KGLGEM A +L +T Sbjct: 535 VYIARPPLYGLKVGKKEYYCHTEEELKQHIEEFA--GDKKYAVQRYKGLGEMNAEELWDT 592 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + +V I + + + LMG K + R KFI+E A + ++ Sbjct: 593 TMDPKHRLMYQVSIGD----AQRADAAFDTLMGEKVEPRRKFIEENALNVINLD 642 >gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633] gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633] Length = 645 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 256/656 (39%), Positives = 379/656 (57%), Gaps = 22/656 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + YDAS I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AG+A Sbjct: 5 NKEVLAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEALAGFAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IE+ + + V D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLH Sbjct: 65 HIEIEITPENHIRVTDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS +L V V + I+ Q + RG L L+ + GT + F PDP+I Sbjct: 124 GVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIVGQTEKH-GTSVYFVPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D +L + A+L+ +K + + P + FY+ GG+K+Y++ Sbjct: 183 FQETTVYDFEKLANRVRELAFLNKGLKLTITDLR-----VEEPVVKTFYYEGGIKSYVEH 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334 +++ ++ E + E+ G VE A+ + S+ N I T EGGTHESG+ Sbjct: 238 LNKSKQVLFEEPIYVEGEQDGIQ---VEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGM 294 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I YA + + + +D+ ++S+ +P+F GQTKTKL + +A Sbjct: 295 KTALTRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEA 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + + FD +L++NP A K++E I S+ RL ++ RE +K+ + LPG Sbjct: 355 RTITDRLFATHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N +E+FIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N Sbjct: 415 KLADCSSNDPSVSEIFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKASLDKILAND 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G + RY K++IMTDADVDGAHI +LL+T FY+ M ++E + Sbjct: 475 EIRSLFTAMGTGFGGDFDLSKARYHKLVIMTDADVDGAHIRTLLITLFYRYMRPVVEAGY 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++ QG + Y ++E + L+E K +ISR+KGLGEM A QL ET Sbjct: 535 VYIAQPPLYKLKQGKQEFYIQNDEELEAKLKELPAS--PKPQISRYKGLGEMDAEQLWET 592 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 M+ R++L+V + + ++ LMG K + R +FI+ + FID D+ Sbjct: 593 TMNPQNRSMLQVTVED----AAEADQVLDMLMGDKVEPRREFIEANSKFIDVNDLD 644 >gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36] gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36] Length = 653 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 258/654 (39%), Positives = 383/654 (58%), Gaps = 22/654 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + IEV+++ Sbjct: 12 SYSAENIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++S G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWPDGTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + AYL+ +K + + E+ + E FY GLK +++ +R Sbjct: 189 NYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKK-EIFYSEEGLKEFVRYVDSSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 +++ TEK+GT VE AI + + SY N I T EGGTH +G R ALTR Sbjct: 248 FMNDVIYINTEKQGTP---VEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI ++ R+ RK RE ++ + + +PGKLADCS Sbjct: 365 VGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSS 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K + ++ +++Q Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484 Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ALG R + + LRY+K+IIMTDADVDG+HI +L++T F++ +I+Q L Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCL 544 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ +PPL+ T+G Y ++ +QK ++ + + + R+KGLGEM QL ET Sbjct: 545 YIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWETT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L +V + + + + LMG R FI++ A++ ++ Sbjct: 605 MNPENRMLKQVHLE----NAAEADYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653 >gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916] gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto] gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916] gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto] Length = 637 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 373/653 (57%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS++ V V R+ I+ QKF RGI + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + A+L+ +K + ++ +KE F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + I ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRVINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+ Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + + L E I R+KGLGEM QL ET Sbjct: 529 YIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V + + + + LMGTK + R FI+ A + ++ Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636 >gi|163740909|ref|ZP_02148302.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10] gi|161385900|gb|EDQ10276.1| DNA topoisomerase IV subunit B [Phaeobacter gallaeciensis 2.10] Length = 652 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 346/652 (53%), Positives = 449/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ASD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPASDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F Q+FSRGIP P+EK NKRGT +TF D +IF Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F RL + +SKAYL V+ W + + E P + F+FPGGLK YL Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYADQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L++++ R+EERLRR++++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S KI N +I Sbjct: 423 TDCTSKDRTGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG T +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG + VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T + + +LMG K + R+++IQE A F++++ Sbjct: 602 DPTTRKLIRVTIDEDE--PGETSELVEQLMGKKPELRYQYIQENAKFVEELD 651 >gi|254476308|ref|ZP_05089694.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11] gi|214030551|gb|EEB71386.1| DNA topoisomerase IV, B subunit [Ruegeria sp. R11] Length = 652 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 345/652 (52%), Positives = 446/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + A+D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPAADTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F Q+FSRGIPL +EK N+RGT +TF D +IF Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPLGGVEKVGAAPNRRGTSVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F RL + +SKAYL V+ W K + P + F+FPGGL+ YL Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRW---KSHIDDGETPTEATFHFPGGLRDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYADVPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVTG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGELVNNKKAAQITRDDLMTGGCALVSCFIADPAFVGQTKDRLSTEAAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L+++I R+EERLRR++++E RKTA +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRKQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S K+ +N +I Sbjct: 423 TDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGKLGSNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG + VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDMWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651 >gi|113954544|ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC9311] gi|113881895|gb|ABI46853.1| DNA gyrase, B subunit [Synechococcus sp. CC9311] Length = 655 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 269/658 (40%), Positives = 382/658 (58%), Gaps = 20/658 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DNA+DE +AG+ Sbjct: 2 SEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNAVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V L +G V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 NEITVVLGEDGSAFVSDNGRGIPTDVHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG + L + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAAIGSLASEPQPAEEKGLTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270 D +IF FD + L + AYL+G V+ + +++ A ++ G P +E +++ GG+K Sbjct: 181 DHQIFTVGIEFDYSTLSARLRELAYLNGGVRIVFRDERQAARDQEGKPREELYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC--EENPEITSYCNTILTDEGG 328 Y+ + + EI +EK G +VE A+ WC + I + N I T +GG Sbjct: 241 EYVAYMNAEKDPLHPEIIYVNSEKDGV---SVEAALQWCVDAYSDSILGFANNIRTVDGG 297 Query: 329 THESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTK Sbjct: 298 THIEGLKTVLTRTLNTFAKKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTK 357 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + + + V+N + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 358 LGNTEVRGIVDNLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLE 417 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 418 SSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDA 477 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 KI N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +L+LTFFY+ Sbjct: 478 KIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQK 537 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L+E ++++ PPL+++ +G Y ++E+ QK L F + K I RFKGLGEM+ Sbjct: 538 ELVEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGE--KANYNIQRFKGLGEMM 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD + R + RVE+ L + LMG K R +FI+ ++ +D Sbjct: 596 PKQLWETTMDPSTRMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSADLD 649 >gi|163848553|ref|YP_001636597.1| DNA gyrase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222526487|ref|YP_002570958.1| DNA gyrase subunit B [Chloroflexus sp. Y-400-fl] gi|163669842|gb|ABY36208.1| DNA gyrase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222450366|gb|ACM54632.1| DNA gyrase, B subunit [Chloroflexus sp. Y-400-fl] Length = 636 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 368/647 (56%), Gaps = 23/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD S I++LEG+E VR RPGMYIG TD LH + EV+DN++DEV+AG A + V++ Sbjct: 8 TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATSVSVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+G GIPV HPK STL +++T LHAGGKF + Y++S GLHGVG+S V Sbjct: 68 RDGSVTVSDDGSGIPVGIHPK-EGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V V R + Q++ G+P++ + E ++ GT F PD I + Sbjct: 127 NALSAYMRVDVYRNGRHYYQEYRAGVPVTDVIDLEPT-DRHGTTTRFLPDTSIIQTL-DY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + +YL+ ++ + ++ E FYF GG+ +Y++ + +++ Sbjct: 185 NFDTLAQRFREMSYLNKGLRFKFVDERTNRELN-------FYFEGGIVSYVRHLNKEKTV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTR 340 + + F + VE A+ + + ++ N I +GG+H SG R ALTR Sbjct: 238 LHRQPFYVERIVDDVM---VEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTR 294 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ DD+ ++SV +++P+F+ QTK KLVS +A V Sbjct: 295 VINNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVAT 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 D F +L +NP EA +++E I + RL +K RE RK+A+ LPGKLADCS Sbjct: 355 VFSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRETARKSAMEGFSLPGKLADCSD 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 EL+IVEGDSAGG+AKQ R+R QA+LPLRGKILNV + +++ +N ++ L+ Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G Q+ LRY ++ +MTDADVDG+HI +LLLTFF++ M LI HLF+ PP Sbjct: 475 AIGTSIGDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + VY + + + L + K+EI R+KGLGEM A QL ET M+ R Sbjct: 535 LYRIKHGREQVYTYSDAERDAYLSKLPP--GTKVEIQRYKGLGEMNAEQLWETTMNPQNR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V + ++ LMG R +FIQ A+ + ++ Sbjct: 593 VILQVTLED----AARADETFTMLMGDLVPPRRRFIQTHANEVVELD 635 >gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379] gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379] Length = 638 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 259/654 (39%), Positives = 368/654 (56%), Gaps = 20/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y+A I++LEGLE VR+RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 1 MVENKKTQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V+++ ++ V DNGRGIPV+ + K LE+ILT LHAGGKF Y++SGGL Sbjct: 61 NTITVAIEEGNWIRVEDNGRGIPVDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L +V R I+S KF RG + + ++ GT I F+ DP+ Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIYSMKFERGDVVQGITVIGDT-DRTGTTIRFKADPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + A+L+ + ++ EK E F + GGL Y++ Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDERIGQEKE-----ETFCYEGGLLEYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 EN+ + E E G VE ++ + SY N I T EGGTHESG Sbjct: 234 MLNENKDALH-EAIYVHGEMDG---KEVEISMQYNTGYSNNVLSYANNINTHEGGTHESG 289 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + + K S+ DD+ V I+S+ P+F GQTKTKL + + Sbjct: 290 FKTALTRIINSYGKKNKLIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + D +L++NP A ++E ++ S R+ +K RE RK A+ LPG Sbjct: 350 STITNKLFSEELDRFLLENPKTAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A ELF+VEGDSAGGSAK RN QA+LPL+GKILNV +K+ N Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLAND 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ A+G + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI+ + Sbjct: 470 EVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+ + G K Y H EE ++ +EE G K + R+KGLGEM A +L +T Sbjct: 530 VYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHA--GDKKYTVQRYKGLGEMNAEELWDT 587 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + +V +N + + + LMG K + R KFI++ A + ++ Sbjct: 588 TMDPEHRLMYQVSVND----AQRADAAFDTLMGEKVEPRRKFIEDNALNVINLD 637 >gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus DSM 14838] gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus DSM 14838] Length = 653 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 256/654 (39%), Positives = 381/654 (58%), Gaps = 22/654 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + IEV+++ Sbjct: 12 SYSAENIQVLEGLEAVRKRPAMYIGDISTKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDFHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++ G PL P+++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWPDNTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + AYL+ +K + + E+ + E FY GLK +++ +R Sbjct: 189 NYEILATRMRELAYLNAGIKITLTDLRVKDEENNA-KMEVFYSEEGLKEFVRYIDSSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + +++ TEK+GT VE AI + I SY N I T EGGTH +G R ALTR Sbjct: 248 LVNDVIYINTEKQGTP---VEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + ++YL ++P EA +++ VI ++ R+ RK RE ++ + + +PGKLADCS Sbjct: 365 VGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGKLADCSS 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A K + ++ +++Q Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484 Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ +I +L Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQVIRNGYL 544 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ +PPL+ +G Y ++ +QK ++ + + + R+KGLGEM QL T Sbjct: 545 YIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWSTT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L ++ I + + + LMG R FI++ A++ ++ Sbjct: 605 MNPENRMLKQISIE----NAAEVDYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653 >gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 264/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGHKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+ + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQASLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492] gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20] gi|156858838|gb|EDO52269.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492] gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20] Length = 653 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 258/654 (39%), Positives = 383/654 (58%), Gaps = 22/654 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AGY + IEV+++ Sbjct: 12 SYSAENIQVLEGLEAVRKRPAMYIGDISSKGLHHLVYEVVDNSIDEALAGYCDHIEVTIN 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 72 EDNSITVQDNGRGIPVDYHEK-EKKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V R I+ Q++S G PL +++ + GTR F PD IF + + Sbjct: 131 NALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWPDDTIFTETV-Y 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + AYL+ +K + + E+ + E FY GLK +++ +R Sbjct: 189 NYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKK-EIFYSEEGLKEFVRYVDSSREH 247 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 +++ TEK+GT VE AI + + SY N I T EGGTH +G R ALTR Sbjct: 248 FMNDVIYINTEKQGTP---VEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFRRALTRT 304 Query: 342 IKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KKYAE + K + I DD ++S+ + EP+F GQTKTKL + + V+ A Sbjct: 305 LKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVMGAVDQA 364 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + +YL ++P EA +++ VI ++ R+ RK RE ++ + + +PGKLADCS Sbjct: 365 VGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGKLADCSS 424 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K + ++ +++Q Sbjct: 425 KDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDEVNNIIQ 484 Query: 519 ALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ALG R + + LRY+K+IIMTDADVDG+HI +L++T F++ +I+Q L Sbjct: 485 ALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQVIQQGCL 544 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ +PPL+ T+G Y ++ +QK ++ + + + R+KGLGEM QL ET Sbjct: 545 YIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPEQLWETT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L +V + + + + LMG R FI++ A++ ++ Sbjct: 605 MNPENRMLKQVHLE----NAAEADYIFSMLMGEDVGPRRDFIEKNATYA-NIDA 653 >gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2] gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2] Length = 636 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 262/647 (40%), Positives = 379/647 (58%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDA I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY N I+V + Sbjct: 7 SYDAGEIQVLEGLEAVRKRPGMYIGSTSVKGLHHLVWEVVDNSIDEALAGYCNSIQVVVH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV H K KS LE+++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 67 KDNSITVTDNGRGIPVSEHAKM-KKSALEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R ++ Q++ RG P + GT+ TF PD +IF + + Sbjct: 126 NALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTEE-TGTQTTFYPDEQIFTETTVY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + A+L+ + + ++ + F++ GG+ Y+Q + R Sbjct: 185 DYDTLQTRIRELAFLNKGIAISLTDER-------TGASDTFHYEGGISEYVQFLNQKREA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + VE A+ + + I S+ N I T EGGTHESG + ALTR Sbjct: 238 LHEQPIYVEGSRDMIQ---VEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + ++ DD+ I+SV I EP+F GQTKTKL + + + VE+ Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + +L +NP + ++++ ++ + R RK RE RK+A+ LPGKLADCS Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I ++ +I +V Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + RY KVIIMTDADVDGAHI +LLLTFFY+ M +I+ ++++ PP Sbjct: 475 AMGTGIGDDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF++ + YA+ E + +I++EF ++ K + R+KGLGEM A+QL ET MD R Sbjct: 535 LFKVERNKVVRYANSEAERDEIIKEFGEN--AKYNVQRYKGLGEMNATQLWETTMDPESR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V ++ + N LMG + R FIQE A ++ ++ Sbjct: 593 TMLQVTVSDAM----LADTLFNTLMGDNVEPRRDFIQEHAKYVKNLD 635 >gi|86357804|ref|YP_469696.1| DNA topoisomerase IV subunit B [Rhizobium etli CFN 42] gi|86281906|gb|ABC90969.1| DNA topoisomerase IV subunit B protein [Rhizobium etli CFN 42] Length = 660 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 438/663 (66%), Positives = 527/663 (79%), Gaps = 6/663 (0%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 P PA +A D+Y ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVID Sbjct: 2 TAVPSTPTRPAPVASNA-DDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVID 60 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 NAMDE +AG+AN IEV LD G+LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKF Sbjct: 61 NAMDEAVAGHANFIEVHLDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 D YE SGGLHGVG+SVVNALSD L V VAR ++ Q+FSRG+P LE+ V N+R Sbjct: 121 DGKAYETSGGLHGVGVSVVNALSDFLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRR 180 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEE 262 GTR+ F PDP+IFGD F+AAR+ +M +SKAYL G V+ WSC+ + E +P+K Sbjct: 181 GTRVRFHPDPQIFGDHMKFEAARVFRMARSKAYLFGGVEIRWSCEPGVLPEGSEVPDKAT 240 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTI 322 F+FPGGLK YLQ + ++ EIF GKTEK + G++EWAI W +P++ SYCNTI Sbjct: 241 FHFPGGLKDYLQATMGKEFTVTREIFAGKTEK-ASGHGSMEWAITWYGGDPQVHSYCNTI 299 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 T EGGTHE+GLR+ALT+G+K YAELTQNKRA I +DD+MISAVG+LSVFIREPEF GQ Sbjct: 300 PTPEGGTHEAGLRIALTKGLKAYAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQ 359 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KL +++AQR VENALRDPFDHYL NP EA KLL+WVIER+EERLRRRK++EVNRKT Sbjct: 360 TKDKLATVEAQRIVENALRDPFDHYLADNPNEAAKLLDWVIERAEERLRRRKEKEVNRKT 419 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+RKLRLPGKLADCSQN A G ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASA Sbjct: 420 AVRKLRLPGKLADCSQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASA 479 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 G EK NQQ+ DL+QALGC TRS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQE Sbjct: 480 GREKFGANQQLADLIQALGCGTRSKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQE 539 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M +L+ HLFL PPL++ITQG KS YA D+ H+ ++++ K GK K+EISRFKGLGE Sbjct: 540 MPELVRGGHLFLAVPPLYKITQGAKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGE 598 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M+ +QLKET MD KRTLLRV I++ + T+ +++ LMGTK + RF+FIQERA+F + Sbjct: 599 MMPAQLKETTMDPAKRTLLRVLIDEV--DFEGTRSAVDDLMGTKPEARFRFIQERAAFAE 656 Query: 683 DVG 685 ++ Sbjct: 657 NLD 659 >gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341] gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341] Length = 638 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 260/654 (39%), Positives = 370/654 (56%), Gaps = 20/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y+A I++LEGLE VR+RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 1 MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ ++ V DNGRGIPV+ + K LE+ILT LHAGGKF Y++SGGL Sbjct: 61 DTITVAIEKGNWIRVEDNGRGIPVDIQEQ-TGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L +V R I + KF RG + + ++ GT I F+ DP+ Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIHTMKFERGDVVQGITVVGNT-DRTGTTIRFKADPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + A+L+ + ++E EK E FY+ GGL Y++ Sbjct: 179 IFQETTVYDYDILRTRIRELAFLNKGITIILKDEREGQEKE-----ETFYYEGGLLEYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 EN+ + E E G VE ++ + SY N I T EGGTHESG Sbjct: 234 MLNENKDALH-EAIYVHGEMDG---KEVEISMQYNTGYSSNVLSYANNINTHEGGTHESG 289 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I Y + + K S+ DD+ V I+S+ P+F GQTKTKL + + Sbjct: 290 FKTALTRIINSYGKKNKLIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEM 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + D +L++NP A ++E ++ S R+ +K RE RK A+ LPG Sbjct: 350 STITNKLFSEELDRFLLENPKIAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A ELF+VEGDSAGGSAK RN QA+LPL+GKILNV +K+ N Sbjct: 410 KLADCSSKDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLAND 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ A+G + LRY K++IMTDADVDG+HI +LLLTFF++ M +LI++ + Sbjct: 470 EVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDEGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+ + G K Y H EE ++ +EE G K + R+KGLGEM A +L +T Sbjct: 530 VYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHA--GDKKYTVQRYKGLGEMNAEELWDT 587 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + +V I+ + + + LMG K + R KFI++ A + ++ Sbjct: 588 TMDPEHRLMYQVSIDD----AQRADAAFDTLMGEKVEPRRKFIEDNALNVINLD 637 >gi|329964535|ref|ZP_08301589.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057] gi|328524935|gb|EGF51987.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057] Length = 657 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 256/664 (38%), Positives = 378/664 (56%), Gaps = 24/664 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +NY AS+I++LEGLE VR RP MYIG E LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISENGLHHLVYEVVDNSIDEAMAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214 GVG+S VNALS + V R I+ Q++ G PL +++ GT+ TF PD Sbjct: 124 GVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEVGTCDPGFSGTKQTFWPDDS 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + L + AYL+ + + + E+ P+ E+F+ G+K +++ Sbjct: 184 IFTV-SEYKYTTLQARLRELAYLNKGITITLTDLRSKDEEG-NPQVEKFHSEEGVKEFVR 241 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N + + ++ TEK G +E AI + + SY N I T EGGTHE G Sbjct: 242 YLNSNNNPLFDDVIYLNTEKAGVP---IECAIMYNTGYRENLHSYVNNINTKEGGTHEGG 298 Query: 334 LRVALTRGIKKY----AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 R ALTR +KKY K + I +D + ++SV + EP+F GQTKTKL + Sbjct: 299 FRAALTRVLKKYGEDTCAKQLEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGN 358 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + V A+ + +YL ++P EA ++E VI + R+ RK RE ++ + + Sbjct: 359 SEVSGAVNQAVGEALSYYLEEHPKEAKLIVEKVILAATARVAARKARESVQRKSPMSGGG 418 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 +PGKLADCS ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K Sbjct: 419 MPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAF 478 Query: 509 NNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 + ++ +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ Sbjct: 479 ESDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRY 538 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +I+ +L++ +PPL+ ++G Y ++ +QK ++ + + I R+KGLGE Sbjct: 539 FPQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGE 598 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET M+ R L +V + S + + LMG R FI+ A++ Sbjct: 599 MNPEQLWETTMNPENRMLKQVHLE----SAAEADYVFSMLMGEDVGPRRDFIEANATYA- 653 Query: 683 DVGT 686 ++ Sbjct: 654 NIDA 657 >gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822] gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822] Length = 640 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 255/651 (39%), Positives = 376/651 (57%), Gaps = 19/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVG+S Sbjct: 62 INPDGSVTVTDDGRGIPTDTHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ ++VTV R F+Q++ RGIP++ LE + + + GT ++F PD +IF D Sbjct: 121 VVNALSEWVNVTVWRDQKRFTQRYERGIPVTSLESQPETDHSTGTSVSFLPDTQIFSDGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + L + AYL+ V+ +S + P E + + GG+K Y+ + Sbjct: 181 EFDYSTLAGRLRELAYLNAGVRITFSDKR-----LEQPRVESYCYEGGIKEYVAYMCREK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ G + V N + + N I T +GGTH GL+ LTR Sbjct: 236 QPLHEEIIYVQGERNGI-QIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ G++SV + EPEF GQTKTKL + + + V++ Sbjct: 295 TLNNVARKRNKIKENEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A ++E ++ + R+ RE V RK+ + LPGKLADCS Sbjct: 355 LVGEVLGEYLEFHPQIADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCS 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+FIVEGDSAGGSAKQ R+R +QA+LPLRGKILN+ KI N +I L+ Sbjct: 415 ERDPAKSEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 474 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY ++IIMTDAD DG+HI +LLLTFFY+ +++Q ++++ Sbjct: 475 TALGLGIKGEEFDAAQLRYHRIIIMTDADYDGSHIRTLLLTFFYRYQRSIVDQGYIYIAC 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y ++E Q+ + E + I RFKGLGEM+ QL ET M+ Sbjct: 535 PPLYKVERGKNHRYCYNERELQQYISELPPNAN--YSIQRFKGLGEMMPQQLWETTMNPE 592 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R L +VEI ++ LMG + R +FI+ + D+ Sbjct: 593 TRLLKQVEIED----AAKAEELFTILMGDRVLPRREFIETHGPRLKLTDLD 639 >gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4] Length = 636 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 259/645 (40%), Positives = 376/645 (58%), Gaps = 20/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I+V Sbjct: 2 SAEYNADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGYCDTIDVQ 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K +E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INSDNSITVVDDGRGIPVDIQKKA-GLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ L V V ++ Q++ RG + PL+ +K GT++TF PD IF + Sbjct: 121 VVNALSEWLEVEVYHGGKVYKQRYERGKTMYPLKIVGDCPSDKHGTKVTFLPDKTIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ +K D+E ++ + F++ GG+K ++ + Sbjct: 181 V-YDYDTLKIRLRETAFLTKNLKIILRDDREDKKE------KVFHYEGGIKEFVTYLNRS 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + + +K VE A+ + I S+ N I T EGGTH +G R AL Sbjct: 234 NVPLYDNVIYCEGKKDNVL---VEVAMQHNDSYTENIYSFVNNINTPEGGTHLTGFRNAL 290 Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ Y + + +D+ I+SV I EP+F GQTK KL + +A+ V Sbjct: 291 TKTFNDYGRKNKLLKDNEPALTGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 ++ + + ++L QNP A ++E V+ + R+ + RKT + L LPGKLAD Sbjct: 351 DSVVSEQLTYFLEQNPSVAKTIIEKSVLAQRARAAARKARDLTRRKTVLDGLSLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK ARN+S QA+LPLRGKILNV A ++I N +I Sbjct: 411 CSSKHPEECEIYIVEGDSAGGSAKDARNKSTQAILPLRGKILNVEKARLDRIYGNAEIKS 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 471 MITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I + + YA+ +E IL+E + K I R+KGLGEM A QL ET MD Sbjct: 531 QPPLYKIEKNKRVWYAYSDEELNNILKEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R LLRV +N+++ S + + LMG + + R +FI++ A + Sbjct: 589 EHRVLLRVTMNEEMTS--EIDLTFTTLMGDQVEPRREFIEQNAKY 631 >gi|163737410|ref|ZP_02144827.1| DNA topoisomerase IV, B subunit [Phaeobacter gallaeciensis BS107] gi|161388936|gb|EDQ13288.1| DNA topoisomerase 4 subunit B [Phaeobacter gallaeciensis BS107] Length = 652 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 345/652 (52%), Positives = 450/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ASD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPASDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVTLHADYAVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F Q+FSRGIP P+EK NKRGT +TF D +IF Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGIPQGPVEKIGAAPNKRGTFVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F RL + +SKAYL V+ W + + E P + F+FPGGLK YL Sbjct: 187 GS-HRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSVYAEQPFAGKVEFREKFNAPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y +L NK+A SI +DLM ++S FI +P F GQTK +L + A Sbjct: 303 FWAAILKGIKAYGDLVGNKKAASITREDLMAGGCALVSCFIADPAFVGQTKDRLSTEIAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L++++ R+EERLRR++++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S KI N +I Sbjct: 423 TDCTSKDRAGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKIGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG T +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 RDLCEALGVGTGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG + VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGARRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T + + +LMG K + R+++IQE A F++++ Sbjct: 602 DPTTRKLIRVTIDEDE--PGETGELVEQLMGKKPELRYQYIQENAKFVEELD 651 >gi|254511973|ref|ZP_05124040.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11] gi|221535684|gb|EEE38672.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium KLH11] Length = 652 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 349/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 TPEVTNTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHDDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR T+F Q+FSRG+PL P+EK N+RGT +TF D IF Sbjct: 127 VGASVVNALSDSMVVQVARDKTLFEQRFSRGVPLGPVEKVGAAPNRRGTTVTFHADADIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL K +SKAYL V+ W K + P + F+FPGGL YL+ Sbjct: 187 -GHHKFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLKET 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + S + + F G ++K G VEWAI W + I SYCNT+ T EGGTH +G Sbjct: 243 MNGSSTYAEQPFAGTVDFQEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDL+ ++S FI EPEF GQTK +L +++AQ Sbjct: 303 FWAAVLKGIKAYGELINNKKAGQITRDDLITGGCALVSCFISEPEFVGQTKDRLATVEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VEN++RD FD++L + A +L+++I R+EERLRRR ++E RK+A +KLRLPGKL Sbjct: 363 RLVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRAEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS + GTELFIVEGDSAGGSAK R+R QA+LPLRGKILNV A S K+ N +I Sbjct: 423 VDCSSSTRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M +I+ HL+ Sbjct: 483 NDLTQALGVGLGTKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY DE + + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDEWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPGSRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|56696142|ref|YP_166498.1| DNA topoisomerase IV subunit B [Ruegeria pomeroyi DSS-3] gi|56677879|gb|AAV94545.1| DNA topoisomerase IV, B subunit [Ruegeria pomeroyi DSS-3] Length = 652 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 346/652 (53%), Positives = 451/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +EV+DN+MDE +AG+AN Sbjct: 7 SGAQTATYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEVLDNSMDEAVAGFANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR ++ Q+FSRG+PL P+++ N+RGT +TF D +IF Sbjct: 127 VGASVVNALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAPNRRGTTVTFHADEEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL K +SKAYL V+ W K + P + F+FPGGL YL+ Sbjct: 187 -GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLADYLKET 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S + + F G + +K G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 243 LGKASTYAEQPFAGTVDFTEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GI+ Y EL NK+A I DDL+ ++S FIREPEF GQTK +L +++AQ Sbjct: 303 FWSAILKGIRAYGELISNKKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLATVEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VE A+RD FD++L + A +L++++ R+EER+RRR+++E RKTA +KLRLPGKL Sbjct: 363 RLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ +NQ+I Sbjct: 423 VDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG +++ +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+ Sbjct: 483 SDLTQALGVGLGTRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY DE + + L + GKGKI++SRFKGLGEM A LK+T M Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDEWLAK-GLGGKGKIDVSRFKGLGEMDAKDLKDTTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 NPETRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|148378017|ref|YP_001252558.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 3502] gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397] gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall] gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502] gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397] gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall] gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065] Length = 637 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 253/653 (38%), Positives = 372/653 (56%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS++ V V R+ I+ QKF RGI + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + A+L+ +K + ++ +KE F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRVINDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+ Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K +Y + + L E I R+KGLGEM QL ET Sbjct: 529 YIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V + + + + LMGTK + R FI+ A + ++ Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636 >gi|219850524|ref|YP_002464957.1| DNA gyrase subunit B [Chloroflexus aggregans DSM 9485] gi|219544783|gb|ACL26521.1| DNA gyrase, B subunit [Chloroflexus aggregans DSM 9485] Length = 636 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 368/647 (56%), Gaps = 23/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD S I++LEG+E VR RPGMYIG TD LH + EV+DN++DEV+AG A + V++ Sbjct: 8 TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATSVSVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+G GIPV HPK STL +++T LHAGGKF + Y++S GLHGVG+S V Sbjct: 68 RDGSVTVSDDGSGIPVGIHPK-EGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGVGVSAV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V V R + Q++ G+P++ + E ++ GT F PD I + Sbjct: 127 NALSSYMRVDVYRNGRHYYQEYRAGVPVTDVIDLEPT-DRHGTTTRFLPDTSIIQTL-DY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + +YL+ ++ + ++ E FYF GG+ +Y++ +++ + Sbjct: 185 NFDTLAQRFREMSYLNKGLRFKFVDERTNRELN-------FYFEGGIVSYVRHLNKDKVV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALTR 340 + + F + VE A+ + + ++ N I +GG+H SG R ALTR Sbjct: 238 LHRQPFYVERVVDEVM---VEVALQYTDTFDTDNVYTFANNINNSDGGSHLSGFRTALTR 294 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ DD+ ++SV +++P+F+ QTK KLVS +A V Sbjct: 295 VINSYARAKGLLKENESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVAT 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 D F +L +NP +A +++E I + RL +K RE RK+A+ LPGKLADCS Sbjct: 355 VFGDAFSAWLDENPADARRIIEKAITAARTRLAVQKVRETARKSAMEGFSLPGKLADCSD 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 EL+IVEGDSAGG+AKQ R+R QA+LPLRGKILNV + +++ +N ++ L+ Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G Q+ LRY ++ +MTDADVDG+HI +LLLTFF++ M LI HLF+ PP Sbjct: 475 AIGTSIGDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + VY + + + L + K+EI R+KGLGEM A QL ET M+ R Sbjct: 535 LYRIKHGREQVYTYSDAERDAYLSKLPP--GTKVEIQRYKGLGEMNAEQLWETTMNPQNR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V + ++ LMG R +FIQ A+ + ++ Sbjct: 593 VILQVTLED----AARADETFTMLMGDLVPPRRRFIQTHANEVVELD 635 >gi|172056050|ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15] gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15] Length = 643 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 370/649 (57%), Gaps = 20/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I+V+ Sbjct: 10 EQGYGADQIQVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYCDTIKVT 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPGNSILVEDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGAS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V R ++ Q + RG+P + LE + GT I F PD +IF + Sbjct: 129 VVNALSTKLEVFVKRNEKLYYQAYHRGVPAADLEIIG-TSEETGTMIRFFPDDEIFQETL 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ + + D+ P F++ GG+K+Y++ ++ Sbjct: 188 EYDYDLLATRLRELAFLNKGLTIEITDDR-----ADEPITRSFHYEGGIKSYVEHLNRSK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALT 339 ++ E + G VE A+ + + I S+ N I T EGGTHE+G + ALT Sbjct: 243 EVVHEEPVYVHGNRDGI---EVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTALT 299 Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + + +D+ I+S+ P+F GQTKTKL + DA+ + Sbjct: 300 RVINDYAKKFGLMKEADGTLSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTATD 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 F+ ++++NP A ++E ++ +R + RK + LPGKLADC Sbjct: 360 TLFSSAFEQFMMENPTSARAIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A +E++IVEGDSAGGSAK R+R QA+LP+RGKILNV A +KI N +I + Sbjct: 420 SSRDATISEIYIVEGDSAGGSAKSGRDRHFQAILPIRGKILNVEKARLDKILGNNEIRTI 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG S++ E RY KVIIMTDADVDGAHI +LLLTFFY+ M L+E ++++ Sbjct: 480 ITALGTSIGSEFNIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQ 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+ I QG Y H+E + L ++ + +I R+KGLGEM QL ET MD + Sbjct: 540 PPLYGIKQGKNITYVHNERELNEALAALPENAR--YDIQRYKGLGEMDPEQLWETTMDPS 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R +LRVE+ + + + + LMG + + R FIQ A ++ ++ Sbjct: 598 GRQMLRVELQDAI----EADEVFDILMGDQVEPRRDFIQSHAHYVKNLD 642 >gi|327188314|gb|EGE55532.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512] Length = 743 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 446/695 (64%), Positives = 541/695 (77%), Gaps = 16/695 (2%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQ-----------SASDNYDASSIRI 51 DDS DLFS LP + + + +PA A S SD Y ASSIR+ Sbjct: 52 DDSNDLFSGLPLSEKREEAQKPAAAAERPAPATATPPAASARPAPAGSNSDEYGASSIRV 111 Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD G+LTV D Sbjct: 112 LEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLTVTD 171 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 NGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNALSD L V Sbjct: 172 NGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDFLEV 231 Query: 172 TVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMT 231 VAR ++ Q+FSRG+P LE+ V N+RGTR+ F PD +IFG+ FDAAR+ +M Sbjct: 232 EVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDAQIFGEHMKFDAARVFRMA 291 Query: 232 QSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 +SKAYL G V+ WSCD + E +P+K F+FPGGLK YLQ + ++ EIF G Sbjct: 292 RSKAYLFGGVEIRWSCDAGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVTREIFAG 351 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 KTEK + G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+G+K YAELTQ Sbjct: 352 KTEK-ASGHGSMEWAITWYGGDPQVHSYCNTIPTPEGGTHEAGLRIALTKGLKAYAELTQ 410 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 NKRA I +DD+MISAVG+LSVFIREPEF GQTK KL +++AQR VENALRDPFDHYL Sbjct: 411 NKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLAD 470 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 NP EA KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G ELFIVE Sbjct: 471 NPNEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFIVE 530 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQ+ DL+QALGC TRS+YR+ Sbjct: 531 GDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLIQALGCGTRSKYRD 590 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL++ITQG+KS Y Sbjct: 591 EDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQGSKSAY 650 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A D+ H+ ++++ + GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V I++ Sbjct: 651 ARDDNHRAELMQT-EFRGKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKVLIDEV-- 707 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + T+ +++ LMGTK + RF+FIQERA+F +++ Sbjct: 708 DFEGTRSAVDDLMGTKPEARFRFIQERAAFAENLD 742 >gi|311746751|ref|ZP_07720536.1| DNA gyrase, B subunit [Algoriphagus sp. PR1] gi|126578430|gb|EAZ82594.1| DNA gyrase, B subunit [Algoriphagus sp. PR1] Length = 652 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 264/663 (39%), Positives = 383/663 (57%), Gaps = 22/663 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AG+ Sbjct: 2 SEEKAKKPAGYGAGNIQVLEGLEAVRKRPAMYIGDVGVKGLHHLIWEVVDNSVDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V+++ + +TV DNGRGIP + H K KS LE++LT LHAGGKFD TY++SGG Sbjct: 62 CDTIHVTVNVDNSITVEDNGRGIPTDWHEK-EQKSALEVVLTVLHAGGKFDKDTYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS +L TV R I Q+F G+P P ++ K +KRGT I F+PD Sbjct: 121 LHGVGVSCVNALSTDLKATVFRDGVITEQEFKIGVPQYPAKEVGKT-DKRGTMIHFKPDD 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + + + A+L+ V+ +E E+ G +EFY GGL ++ Sbjct: 180 SIF-THTEYKYETIANRLREMAFLNAGVRIFLKDLRE-IEEDGNARTDEFYSEGGLVEFV 237 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 Q R I E + E V+ A+ + E SY NTI T EGGTH + Sbjct: 238 QYLDNTREKIIEEPIYIEGEFNSVP---VQVAMNYNTSYSENVVSYVNTINTYEGGTHVT 294 Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR +K YA+ + K + + DD ++SV + EP+F GQTKTKL + Sbjct: 295 GFRRALTRTLKSYADKSGMLDKLKLEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNS 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRL 449 + V++A+ + +L ++P EA ++ V+ ++ R RK RE+ ++ + L Sbjct: 355 EVVGAVDSAVSETLQSWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGL 414 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A KI + Sbjct: 415 PGKLADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYD 474 Query: 510 NQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I +++ ALG + + ++ +LRY K+IIMTDAD+DG+HI +L+LT F++ M Sbjct: 475 NDEIKNILTALGVKFGTVNDDKELDLSNLRYHKIIIMTDADIDGSHIRTLILTLFFRYMR 534 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEM 623 LIE+ +++ PPL+ + +G Y EE ++ + +E K GK + I R+KGLGEM Sbjct: 535 TLIEKGFIYIALPPLYLLKRGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEM 594 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL T MD N RT+ +V I+ S + + LMG + R +FI++ A + Sbjct: 595 NPEQLWTTTMDPNVRTIKQVTID----SAAEADHLFSMLMGDEVAPRREFIEKNAKYAK- 649 Query: 684 VGT 686 + T Sbjct: 650 IDT 652 >gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748] gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748] Length = 633 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 371/650 (57%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 PEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V VA+ I F+RG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSEWTKVQVAQNGIIQEITFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRVESFHYEGGLSSFIAFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + +++ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 470 MITAFGTGIGEEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 587 EHRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|83858465|ref|ZP_00951987.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633] gi|83853288|gb|EAP91140.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633] Length = 712 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 357/717 (49%), Positives = 477/717 (66%), Gaps = 38/717 (5%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS------------------- 41 M DDS D + P +G + PD A +A Sbjct: 1 MADDSQDDLFSAPSAPKGPASPSAPRVTTPDPAPAAQSTAEPPRQTPPAPPPAAPKPAAP 60 Query: 42 --------DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+E++DN+MDE +AG+ Sbjct: 61 IPAASAENKGYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEILDNSMDEAVAGH 120 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ IEV++D +GF++V DNGRGIPV+ HPKFP+KS LE++LTTLHAGGKF + Y+ +GG Sbjct: 121 ADRIEVTMDEDGFVSVSDNGRGIPVDPHPKFPDKSALEVVLTTLHAGGKFSDKAYQTAGG 180 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ + V VAR T++ Q + RGIP P+EK N+RGT + F+PDP Sbjct: 181 LHGVGVSVVNALSELVEVEVARDKTLWRQVYVRGIPQGPVEKVGGAPNRRGTTVRFKPDP 240 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFG +A A R+ M ++KA+L V+ W C + + E IP + FPGGL L Sbjct: 241 EIFGPRAILKAPRIFNMARAKAFLRRGVQIRWKCPESLVEGTDIPAETTLAFPGGLADRL 300 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-----EITSYCNTILTDEGG 328 + + ++ F G+ E+ G G VEWA+A+ E S+CNT+ T GG Sbjct: 301 VELTPGAA-LVTDQFAGRVERDGRM-GAVEWAVAFSENGFGPDDSFCQSFCNTVPTPMGG 358 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 THE GLR AL++G++ Y EL K+A I +DD+M A ++SVFI++PEF GQTK +L Sbjct: 359 THEQGLRSALSKGLRAYGELANVKKAAQITADDVMGGAGVLISVFIKDPEFQGQTKDRLS 418 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 + +A R VE A+RD FDH+L P +A +L+EW ++R+E+RL+R++++EV R++A RKLR Sbjct: 419 TAEAGRLVEQAIRDQFDHWLAGRPKDAARLVEWAVDRAEDRLKRKREKEVKRQSATRKLR 478 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCSQN A G ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILNVASA ++KI Sbjct: 479 LPGKLADCSQNSAEGAELFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATADKIA 538 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ+I DL+ ALG + ++ EDLRYE+VIIM DADVDGAHIA+LL TFFY+ + LIE Sbjct: 539 ANQEISDLLLALGVQPGKKFDLEDLRYERVIIMCDADVDGAHIAALLATFFYKFLPGLIE 598 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 LF+ PPL+R+TQG K++YA D+ K ++LE K KGK+E+ RFKGLGEM QL Sbjct: 599 SGRLFMAQPPLYRLTQGGKTLYAQDDVEKDRLLETAFK--KGKVEVGRFKGLGEMTPPQL 656 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 K T M R+L RV + ++ + + LMG K + RF+FIQ+ A F++DV Sbjct: 657 KSTTMLPESRSLARVVVTPEMR--ESADALVETLMGKKPELRFQFIQDNAPFVEDVD 711 >gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 627 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSILVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RGIP++ L+ +K GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R IQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNSIQENAKY 627 >gi|6006289|dbj|BAA84773.1| DNA gyrase B subunit [Bacteroides fragilis] Length = 653 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 257/661 (38%), Positives = 382/661 (57%), Gaps = 22/661 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N + + +Y A SI++LEGLE VR RP MYIG K LHHL E++DN++DE +AGY + Sbjct: 5 QNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDISVKGLHHLVYEIVDNSIDEALAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+ +T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDFHEK-EQKSALEVAMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL P+++ + + GT+ F PD I Sbjct: 124 GVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVG-IADHTGTKQQFWPDDSI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + +D L + AYL+ ++ + + + + G + E FY GL+ +++ Sbjct: 183 FTETI-YDYKILASRLRELAYLNAGLRISLTD-RRVVNEDGSFKHETFYSEEGLREFVRF 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R + +++ TEK+ +E AI + I SY N I T EGGTH +G Sbjct: 241 IESSREHLINDVIYLNTEKQNIP---IEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR +KKYAE ++ K + I DD ++SV + EP+F GQTKTKL + + Sbjct: 298 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 357 Query: 393 QRTVENALRDPFDHYL-VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 + +Y ++P EA +++ VI + R RK RE+ ++ + + LP Sbjct: 358 NGVLPIRRYGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLP 417 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS ELF+VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV A K + Sbjct: 418 GKLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALES 477 Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY K+IIMTDADVDG+HI +L++TFF++ M Sbjct: 478 EEIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQ 537 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +I+ +L++ +PPL+ +G Y + +QK ++ + + I R+KGLGEM A Sbjct: 538 IIQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNA 597 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD R L +V I+ + + + LMG R +FI+E A++ ++ Sbjct: 598 QQLWETTMDPENRMLKQVNID----NAAEADYIFSMLMGEDVGPRREFIEENATYA-NID 652 Query: 686 T 686 Sbjct: 653 A 653 >gi|160893407|ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50] gi|156864802|gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50] Length = 638 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 272/650 (41%), Positives = 382/650 (58%), Gaps = 19/650 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NYDA I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY N IEV Sbjct: 2 SNNYDAEQIQVLEGLEAVRKRPGMYIGSTSTRGLHHLVYEIVDNSVDEALAGYCNHIEVF 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVDNGRGIPV K KS LE++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INPDNSITVVDNGRGIPVGIQEK-TGKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ L V V R ++ Q + RG S L+ +K GT++TF PD IF D Sbjct: 121 VVNALSEWLEVEVTRDGHVYKQTYKRGNVDSTLQIIADAPEDKSGTKVTFLPDKTIFDDW 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ +K + + P++ F++ GG+K +++ + Sbjct: 181 I-YDYDTLRTRLRETAFLTKGLKITLTDLR-----VDPPKERHFHYEGGIKEFVEYMNRH 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 R + ++ + K G + VE A+ + I SY N I T EGGTH +G + A+ Sbjct: 235 REALYDKVIYCEGLKDGVY---VEVAMQHNDSYNEMIHSYVNNINTPEGGTHLTGFKSAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ YA ++ ++ +DL I+SV I EP+F GQTK KL + + + V Sbjct: 292 TKIFNDYARKNNLLKEKEDNLSGEDLREGMSAIVSVKIGEPQFEGQTKQKLGNSEVRPVV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 EN + + ++L QNP A ++ V+ + RR + + + LPGKLAD Sbjct: 352 ENIVSEQLTYFLEQNPNIAKIIINKSVMAQRARIAARRARDVARKANLADNMALPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK+AR+R+ QA+LPLRGKILNV A ++I N +I Sbjct: 412 CSDKDPKNCEIYIVEGDSAGGSAKKARSRATQAILPLRGKILNVEKARIDRILENAEIKA 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + + LRY K+IIMTDADVDGAHIA+LLLTFFY+ M DLI + H++L Sbjct: 472 MITAFGTGIHENFDIDKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLA 531 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ ++ IL E + K I R+KGLGEM A QL ET MD Sbjct: 532 QPPLYKLEKNKKIWYAYSDDELNSILNEVGRDQSNK--IQRYKGLGEMDAEQLWETTMDP 589 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+V I+ D S D + N LMG K + R +FI+ A F+ ++ Sbjct: 590 EKRILLKVAIDDDDESEIDM--TFNVLMGDKVEPRRQFIETNAKFVKNLD 637 >gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521] gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521] gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 637 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 264/645 (40%), Positives = 388/645 (60%), Gaps = 19/645 (2%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY IEV+++ Sbjct: 8 YDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCKKIEVNINK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV+D+GRG+PV HPK KST+E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 68 DNSITVIDDGRGMPVGIHPKM-GKSTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+E VTV R+ I+ Q++S+G L+ +EK + GT++ F+PD +IF + FD Sbjct: 127 ALSEECRVTVKREGAIWQQEYSKGKVLTDVEKIGESSE-SGTQVYFKPDAEIFDEVI-FD 184 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + + A+L+ + +E EK E F++ GG+K+++ N+ + Sbjct: 185 FEILAQRLRELAFLNKGIYIKLVDLREENEKE-----EVFHYEGGIKSFVSYLNRNKVAL 239 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E + K +VE A+ + + I S+ N I T EGGTH G + ALTR Sbjct: 240 HEEPIYIEGIKDNV---SVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAF 296 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA+ + + DD+ ++SV I EP+F GQTKTKL + + + V++ + Sbjct: 297 NDYAKKFGHIKENDKNFTGDDIREGLTAVVSVKIEEPQFEGQTKTKLGNSEVRGIVDSIV 356 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 + +L +NP +++ + + R RK RE+ RK+ + + LPGKLADCS Sbjct: 357 GECISTFLEENPSVGKMIVDKALMAARARDAARKARELTRKSVLERSTLPGKLADCSSKD 416 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E++IVEGDSAGGSAKQ RNR QA+LPLRGKILNV ++I N I +V A Sbjct: 417 PKECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAF 476 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + E +RY+++IIMTDADVDGAHI +LLLTFFY+ M LI++ H+++ PPL+ Sbjct: 477 GAGIGNDFDIEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLY 536 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 +I++G K YA+ + +++L +F +I R+KGLGEM ASQL +T MD +R L Sbjct: 537 KISKGKKEHYAYSDAELEQVLIDFGGKDNST-DIQRYKGLGEMNASQLWDTTMDPEQRIL 595 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV + + + LMG K + R +FIQ+ A + ++ Sbjct: 596 LRVNVEDAM----QADEIFTILMGEKVEPRKEFIQQNAKNVVNLD 636 >gi|325279486|ref|YP_004252028.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712] gi|324311295|gb|ADY31848.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712] Length = 654 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 261/660 (39%), Positives = 373/660 (56%), Gaps = 22/660 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A SI++LEGLE VRMRP MYIG + K LHHL EV+DN++DE +AG+ + I Sbjct: 6 EKNEREYSADSIQVLEGLEAVRMRPSMYIGDVNVKGLHHLVYEVVDNSIDEALAGFCDHI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V+++ + ++V DNGRGIP H K NKS LE+++T LHAGGKFD +Y++SGGLHGV Sbjct: 66 QVTINEDNSISVRDNGRGIPTARHSK-ENKSALEVVMTVLHAGGKFDKDSYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS L + R+ I+ Q++ +GIP ++ ++ GT ITF PD IF Sbjct: 125 GVSCVNALSTTLIAEIHREGKIWRQEYHKGIPAGDVQVVGDT-DRTGTTITFLPDDTIFY 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + AYL+ ++ + +EI + P E F+ GL +++ Sbjct: 184 V-TEYKYDILSARLRELAYLNKGIRLSLTDKREIDPETNAPRHEVFFSQHGLSEFVEYLD 242 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 R + + TEK G VE A+ + E SY N I T EGGTH +G + Sbjct: 243 NTREKLIEDTIDIATEKNGIP---VEVALHYNTGFSENVFSYVNNINTIEGGTHLTGFKR 299 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LT +K YAE K I SDD ++SV + EP+F GQTKTKL + + Sbjct: 300 GLTTTLKAYAESHGMLSKLKFDINSDDFREGLTAVISVKVAEPQFEGQTKTKLGNTEVGT 359 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V A+ ++YL +NP EA +++ VI + R RK R+ V RKT + LPGKL Sbjct: 360 AVSQAVSTVLENYLEENPREAKAIVDKVILAATARHAARKARDLVQRKTVLSGSGLPGKL 419 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A ++ + +I Sbjct: 420 ADCSDNDPAKCEIFLVEGDSAGGTAKQGRDRRYQAILPLRGKILNVEKAMMHRVYESDEI 479 Query: 514 MDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + QALG +Q E LRY K++IM DADVDGAHIA+L++T F++ M +IE Sbjct: 480 KIIFQALGITIGTQEDSKAVNLEKLRYHKIVIMADADVDGAHIATLIMTLFFRFMRPVIE 539 Query: 569 QKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKK-HGKGKIEISRFKGLGEMLAS 626 +L++ +PPL+ + +G K Y ++ ++++ E G + I R+KGLGEM Sbjct: 540 NGYLYIATPPLYSVKKGNKEQRYCWTDKELEQLVNEMSNGKGDAGLHIQRYKGLGEMSKE 599 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET M R L +V I + D + LMG R +FI++ A++ + Sbjct: 600 QLWETTMSPENRILRQVSIE----NAADADRIFSMLMGDDVPPRRQFIEQNATYAT-IDA 654 >gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917] gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917] Length = 705 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 262/652 (40%), Positives = 368/652 (56%), Gaps = 16/652 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV L +G +V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGL Sbjct: 62 SEIEVVLGDDGSASVTDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGAGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG P+ + + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASAPQPVEEKGRTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP-EKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + ++E A +E +++ GG+K Sbjct: 181 DLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESALNAEGDAHEEVYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y+ + + EI EK G + + I + N I T +GGTH Sbjct: 241 EYVAYMNAEKDPLHPEIIYVNAEKDGV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A+ ++ ++ +++ +LSV + EPEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNAFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPSVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ +I Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARI 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ +L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDAKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E +++ PPL+++ +G Y ++E+ Q L F + K I RFKGLGEM+ Sbjct: 540 VEGGFIYIACPPLYKVERGKNHTYCYNEQDLQTTLAGFGE--KANYNIQRFKGLGEMMPK 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 QL ET MD R + RVEI L + LMG K R +FI+ A Sbjct: 598 QLWETTMDPTTRLMKRVEIEDAL----EADRIFTILMGDKVAPRREFIETTA 645 >gi|266620982|ref|ZP_06113917.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479] gi|288867363|gb|EFC99661.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479] Length = 636 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 258/650 (39%), Positives = 383/650 (58%), Gaps = 21/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY ++I+V+ Sbjct: 2 SEEYGADQIQILEGLEAVRKRPGMYIGSTSVRGLHHLVYEIVDNAVDEALAGYCDMIDVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV K +E+ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INEDNSITVVDDGRGIPVGIQKKA-GIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ L V + + + Q++ +G + PL+ + ++ GT++TF PD IF + Sbjct: 121 VVNALSNWLEVEITQDGKTYKQRYEKGKTMYPLKVIREAGPDEHGTKVTFLPDETIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L + A+L+ +K ++E + F++ GG+K ++ Sbjct: 181 V-FDYDTLKIRLRETAFLTKNLKIVLRDNRE------EKHEHVFHYEGGIKEFVTYLNRG 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + ++F + K G + VE ++ + I S+ N I T EGGTH SG + AL Sbjct: 234 KTPLYDQVFYCEGSKDGVY---VEVSMQHNDSYTENIYSFVNNINTPEGGTHLSGFKNAL 290 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T + YA + + ++ +D+ I+SV I EP+F GQTK KL + +A+ V Sbjct: 291 TNTLNDYARNNKLLKENEANLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 +N LR+ F ++L QNP A + + ++ + R+ + RKTA+ + LPGKLAD Sbjct: 351 DNILREQFTYFLEQNPSVAKTICDKSIMAQRARAAARKARDLTRRKTALEGMALPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK AR+R QA+LPLRGKILNV A ++I +N +I Sbjct: 411 CSDKNPENCEIYIVEGDSAGGSAKTARSRDTQAILPLRGKILNVEKARLDRIYSNAEIKA 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q H++L Sbjct: 471 MITAFGTGIHEDFDISKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGHVYLA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ +E IL+E + K I R+KGLGEM A QL ET MD Sbjct: 531 QPPLYKVEKNKKVWYAYSDEELNNILKEIGRDTNNK--IQRYKGLGEMDAEQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LLRV ++ + + + LMG + + R +FI+ A + ++ Sbjct: 589 ERRILLRVAFDE--ETASEIDLTFTTLMGDQVEPRREFIEANAKY-GNLD 635 >gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228] gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A] gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135] gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|38604835|sp|Q8CQK4|GYRB_STAES RecName: Full=DNA gyrase subunit B gi|81819302|sp|Q5HK03|GYRB_STAEQ RecName: Full=DNA gyrase subunit B gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228] gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A] gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135] gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144] gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028] gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045] Length = 643 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 252/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+ IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YASHIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L K + A+L+ ++ E+ ++ +++ GG+K+Y Sbjct: 181 KEIFTETTVYNYETLQKRIRELAFLNKGIQITLK-----DEREEEVREDSYHYEGGIKSY 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + EN+ + E K VE A+ + + +Y N I T EGGTHE Sbjct: 236 VDLLNENKEPLHDEPIYIHQSKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L +NP ++E I S R+ +K RE RK+A+ Sbjct: 353 SEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 413 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ +E + K I+R+KGLGEM A QL Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQEL--NPSPKWSIARYKGLGEMNADQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642 >gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144] gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144] gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909] Length = 643 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 252/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+ IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YASHIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L K + A+L+ ++ E+ ++ +++ GG+K+Y Sbjct: 181 KEIFTETTVYNYETLQKRIRELAFLNKGIQITLK-----DEREEEVREDSYHYEGGIKSY 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + EN+ + E K VE A+ + + +Y N I T EGGTHE Sbjct: 236 VDLLNENKEPLHDEPIYIHQSKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L +NP ++E I S R+ +K RE RK+A+ Sbjct: 353 SEVRQVVDRLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 413 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ +E + K I+R+KGLGEM A QL Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKQEL--NPSPKWSIARYKGLGEMNADQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642 >gi|28376979|ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1] gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1] gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269810|emb|CAD62707.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1] gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1] gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 648 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 256/661 (38%), Positives = 376/661 (56%), Gaps = 20/661 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 ++ + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 TENEKETKLEQAREYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+AN+I V+++ + +TV DNGRGIPV+ K K LE + T LHAGGKF Y+ Sbjct: 62 LAGFANVIHVTVEKDNSITVTDNGRGIPVDIQEK-TGKPALETVYTILHAGGKFGGGGYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRIT 208 +SGGLHGVG SVVNALS L V V R ++ F RG +P++ + GT + Sbjct: 121 VSGGLHGVGASVVNALSSTLDVKVTRNGHVYYMDFERGKVKTPMKIIGDAPDDAHGTAVH 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF + +D L + A+L+ ++ ++ P +++F + GG Sbjct: 181 FVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNR-----PDEPTEDDFLYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327 ++ Y++ +N++++ E + E+ G TVE A+ + ++ ++ N I T EG Sbjct: 236 IRHYVEYLDKNKTVLFPEPIYVEGEQNGI---TVEVALQYTDDYHSNLMTFTNNIHTYEG 292 Query: 328 GTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + ALTR I YA + ++ +D+ ++SV +P+F GQTKT Sbjct: 293 GTHEEGFKRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + DA+ V+ + F YL++NP A K+++ + S+ R+ ++ RE +K+ + Sbjct: 353 KLGNSDARAAVDRLFSEHFSKYLMENPSVARKVVDKGLLASKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD S +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 EISNLPGKLADNSSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASI 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +KI N++I L A+G + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 DKILANEEIRSLFTAMGTGFGGDFDLSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 L++ +++ PPL+++ QG Y +E +++ + K + R+KGLGEM Sbjct: 533 PLVDAGFVYIAQPPLYQVRQGKFVKYIDSDEELSEVMGQLAPS--PKPVVQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD +KR LLRV D + LMG + R +FI++ A F+ D+ Sbjct: 591 AEQLWETTMDPDKRRLLRVR----DEDAADADGVFSMLMGDQVKPRREFIEDNAKFVQDL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra] gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra] Length = 637 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 372/653 (56%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SQENKQVYDESQIQVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TVVD+GRG+PV H K K +E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKV-KKPAVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS++ V V R+ I+ QKF RGI + L+ + GT+I F+PD +IF Sbjct: 121 VGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L + A+L+ +K + ++ +KE F++ GGL++++ Sbjct: 180 DEL-EFEYDTLAHRLRELAFLNKGIKISLTDER-------YDKKEMFHYEGGLRSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ + + K G VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKEKLHQQPIYVDENKDG---CIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + I ++ DD+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRVINDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + +L +NP ++E + S R ++ RE RK+ + LPGK Sbjct: 349 GIVDTIVGQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS E+++VEGDSAGGSAKQ RNR QA+LPL+GKI+NV +KI + + Sbjct: 409 LSDCSSKDPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G ++ + +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LIE+ H+ Sbjct: 469 IRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI + K Y + + L E I R+KGLGEM QL ET Sbjct: 529 YIAQPPLYRIYKAKKETYVYSDPELDAALLELGGKDTNT-NIQRYKGLGEMNPEQLWETT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RTLL+V + + + + LMGTK + R FI+ A + ++ Sbjct: 588 MDPEHRTLLQVTVEDAM----EADEIFTILMGTKVEPRRDFIESNADKVVNLD 636 >gi|126739174|ref|ZP_01754868.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6] gi|126719791|gb|EBA16499.1| DNA topoisomerase IV subunit B [Roseobacter sp. SK209-2-6] Length = 652 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 347/652 (53%), Positives = 449/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + AS+ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 STPASETYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVTLHSDFSVTISDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F Q+FSRG+PL +EK NKRGT +TF D +IF Sbjct: 127 VGSSVVNALSDSMVVQVAKNKELFEQRFSRGLPLGGVEKIGAAPNKRGTFVTFHADEEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F RL + +SKAYL V+ W + + E P + F+FPGGLK YL Sbjct: 187 -GHHRFKPKRLFTLVRSKAYLFSGVEIRWKSEIDDNE---TPTEATFHFPGGLKDYLTEV 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 243 LGKSSIYADQPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDLM ++S FI +P F GQTK +L + A Sbjct: 303 FWSAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTESAS 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L+++I R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 363 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETQRKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S K+ +N +I Sbjct: 423 TDCTSKDRSGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASNKLGSNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 483 NDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + K LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAKRVYCLDEAERDKWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPTTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651 >gi|312142414|ref|YP_003993860.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 640 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 256/650 (39%), Positives = 389/650 (59%), Gaps = 23/650 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY I V + Sbjct: 7 SNYEAEHIQVLEGLEAVRKRPGMYIGSTSTEGLHHLVYEVVDNSIDEAMAGYCTEIIVEI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRGIPVENHPK +K +E+++TTLHAGGKF Y++SGGLHGVGISV Sbjct: 67 QPGNIIKVKDNGRGIPVENHPKI-DKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISV 125 Query: 162 VNALSDELHVTV-ARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNAL++ + V + + ++ QK+ RG+P L + GT I F+ DP+IF + Sbjct: 126 VNALTEWMEVEIAWKDGKVYKQKYERGVPQHELRAIGSCDSDCTGTTIEFKADPQIFEEI 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + + A+L+ +K + K + + GGL ++++ ++ Sbjct: 186 -DYEYRNLAQRLKELAFLNKGLKIKIIDSRVDETKEDE-----YQYDGGLVSFVKYLNQS 239 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + + +TE + G++E AI + + I S+ N I T EGGTH SG + A+ Sbjct: 240 KKPLYPDPIYLETEGE---EGSLEVAIQYHQGYNSSIFSFANNINTKEGGTHLSGFKSAI 296 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR YA + + D+ I+SV + +P+F GQTKTKL + + + V Sbjct: 297 TRTFNDYARKKNILKDSDDNFKGQDIREGMTAIISVKLADPQFEGQTKTKLGNSEMRGFV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++A+ +L +NP A +++ + + R RK R+ RK+A+ LPGKLAD Sbjct: 357 DSAVSSFLKTFLEENPKIAKVIVDKALSAARARKAARKARDLTRRKSALTSTALPGKLAD 416 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C++ A TE++IVEGDSAGGSAKQ RNR QA+LPL+GKILNV + KI NN +I Sbjct: 417 CAKRQAKDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRA 476 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ A+G ++ +LRYE++IIMTDAD+DGAHI +LLLTFFY+ M L+E ++++ Sbjct: 477 LITAIGTGVAEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFYRYMRPLLENGNIYIA 536 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G K Y ++++ +++L+E G+ ++ + R+KGLGEM QL +T MD Sbjct: 537 QPPLYKVKKGRKEEYVYNDKALKELLDEI---GRDRVSMQRYKGLGEMNPGQLWDTTMDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R LL+V I + ++ + LMG K + R KFIQE A+ + ++ Sbjct: 594 DNRILLQVNIEDAI----LADETFSILMGDKVEPRRKFIQENAAQVKNLD 639 >gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 633 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINPDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS V VA+ + F+RG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSKWTKVQVAQNGIVQEISFARGNKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----QEEPRVESFHYEGGLSSFITFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + +++ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEVVNPTVINIENTKDDV---VVDVALQYNDTYSENLLSFVNNINTIDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKAGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + D + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVSDGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEISSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 470 MITAFGTGIGEEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSQWYVYSDAELAAKLDEVGREG---IAIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|325846392|ref|ZP_08169361.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481576|gb|EGC84616.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 634 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 262/647 (40%), Positives = 387/647 (59%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL EV+DN++DE +AG + I++S+D Sbjct: 5 QYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISID 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +TV D+G GIP+E HP+ KSTLE +LT LHAGGKFD+ Y++SGGLHGVG+SVV Sbjct: 65 ENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V R+ I+ F RG P S LE + GT+I+F+ DP+IF + Sbjct: 124 NALSEYLIAEVKREGHIYRMTFERGKPTSDLEIIGDTKE-TGTKISFKADPEIFDVTV-Y 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + A+L+ V+ + ++ +E EF + GG+K +++ N++ Sbjct: 182 NKNTLENRFREMAFLNKGVRLIFEDKRDESE-------VEFKYDGGIKEFVKYLNRNKTP 234 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I EI + ++ T VE + + + I ++ N I T EGGTH SG R ALTR Sbjct: 235 IFKEIPYFEGRQEST---EVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRS 291 Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + ++ DD I+SV I P+F GQTK KL + + + V+ Sbjct: 292 VNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAF 351 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + +L +NP A +++ + R RK R+ +++ + LPGKLADC Sbjct: 352 FSEHMGSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQS 411 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A ++I N ++I ++ Sbjct: 412 QDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMIT 471 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M L+++ H+++ PP Sbjct: 472 AFGTGIGQEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPP 531 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I+ G K Y + ++ + I++E+K +ISR+KGLGEM A QL ET MD R Sbjct: 532 LYKISSGKKERYCYTDKELEDIVKEWKVDN---YKISRYKGLGEMNAEQLWETTMDPENR 588 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + +S T + + LMG K + R +FI+E A +++++ Sbjct: 589 VLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633 >gi|150020566|ref|YP_001305920.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429] gi|149793087|gb|ABR30535.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429] Length = 627 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 374/645 (57%), Gaps = 22/645 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I++L+GLEPVR RPGMYIG T + LHHL E++DN++DE + GY + I V++ Sbjct: 2 DYNAQNIKVLKGLEPVRQRPGMYIGSTGKAGLHHLVYEIVDNSVDEALQGYCDKIYVTIF 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + + DNGRGIPV+ HP+ KS LE+++TTLHAGGKF +Y++SGGLHGVG SVV Sbjct: 62 KDGSVEIKDNGRGIPVDIHPE-TGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V V R I+ QK+ RG PL+ + + + RGT + F+PD +IF F Sbjct: 121 NALSEWLEVEVHRDGKIYYQKYQRGTPLTEVRIIGET-DYRGTIVRFKPDTEIFSTV-EF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D+ +L + A+L+ + + ++E EK F+F GGLK ++ + Sbjct: 179 DSDTILIRLRELAFLNPNITVVFKDERENIEKT-------FHFTGGLKEFVVHLSKGTRS 231 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + I ++ + + +I S+ N I T +GGTH +G + A TR + Sbjct: 232 LHEPILVSGEYNSIKVDVCFQYTAS---DFEKIYSFVNNIRTVDGGTHVTGFKTAFTRVV 288 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIRE-PEFAGQTKTKLVSLDAQRTVENALR 401 + + T + ++ +D+ V I+SV + + PEF GQTK+KL + + Q V +R Sbjct: 289 NELGKKTGQLKKDTLRGEDIREGIVAIVSVLMSKTPEFEGQTKSKLGNEEVQEAVAKVVR 348 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNI 460 + Y N +++ +E + R + RE+ RK+ LPGKLADC Sbjct: 349 EKLLEYFESNENTLKIIIQKALEAKKAREAAKHAREMIKRKSVFGSSSLPGKLADCITKK 408 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV + K+ N+QI D++ AL Sbjct: 409 MEESELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQIRDIITAL 468 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + LRY K+IIMTDADVDGAHI +LLLT FY+ M +LI++ +++ PPL+ Sbjct: 469 GTGIGDDFDISKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIDEGRIYIAQPPLY 528 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ K Y + +E ++ E K K EI R+KGLGEM QL ET MD KR L Sbjct: 529 KVNVNKKIYYFYSDEELEEFKENLKD---KKFEIQRYKGLGEMNPQQLWETTMDPEKRKL 585 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+VEI + + LMG+ + R +FI A + ++ Sbjct: 586 LKVEIEDAEEADE----LFEMLMGSDTESRKEFIFRHALQVKEID 626 >gi|229826860|ref|ZP_04452929.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC 49176] gi|229788478|gb|EEP24592.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC 49176] Length = 636 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 382/649 (58%), Gaps = 19/649 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A I+ILEGLE VR RPGMYIG T K LHHL E++DN++DE +AG + IEV Sbjct: 2 SAEYGADQIQILEGLEAVRKRPGMYIGSTSLKGLHHLVYEIVDNSVDEALAGECSHIEVF 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV + K ++++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 INEDNSITVVDDGRGIPVGINSK-SGLPAVQVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V V + Q++ RG ++ L + + GT +TF PD IF + Sbjct: 121 VVNALSEWLEVLVETDGKAYKQRYERGKVITELTEIG-TTERHGTTVTFLPDKDIFEETV 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + + A+L+ ++ + +E +K + F++ GG+ Y+ +N+ Sbjct: 180 -FEYSTIKHRLREMAFLTKGLRISLTDRREEGKKT-----DSFHYEGGIMEYVSYLNKNQ 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +++ +I + +K VE A+ + S+ N I T EGGTH +G R A+T Sbjct: 234 TVLYDKIIYCEGKKGTVQ---VEVALQHNDGYNEGCYSFVNNINTPEGGTHLTGFRNAIT 290 Query: 340 RGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + +YA++ + + +D+ I+S+ I EP+F GQTK KL + +A+ VE Sbjct: 291 KTFNEYAKIMKLVKDSDPALTGEDIREGMTAIVSIKIPEPQFEGQTKQKLGNSEARGAVE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + +L QNP ++E + R RK R+ RKTA+ + LPGKLADC Sbjct: 351 TIASEQIMIFLEQNPAVGKMIVEKALLAQRARDAARKARDLTRRKTALEYMNLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E+++VEGDSAGGSAK AR+R+ QA+LPLRGKILNV + +KI N++I + Sbjct: 411 SDKNPDNCEIYLVEGDSAGGSAKDARDRATQAILPLRGKILNVEKSRLDKILENKEIQSM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY+K+IIMTDAD+DGAHI +L+LTF Y+ M +LI+Q H++L Sbjct: 471 ITAFGTGIHDDFDISKLRYKKIIIMTDADIDGAHIDTLMLTFIYRFMPELIKQGHVYLAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G K YA++++ + I+ E + K I R+KGLGEM A QL ET MD Sbjct: 531 PPLYKVEKGNKIWYAYNDKELENIMSEIGRDSNNK--IQRYKGLGEMDAEQLWETTMDPE 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LL+V +++ + + + N LMG K + R +FI++ A ++ ++ Sbjct: 589 RRVLLKVMMDE--ENASEIDLTFNTLMGDKVEPRREFIEQNAKYVRNLD 635 >gi|241204755|ref|YP_002975851.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858645|gb|ACS56312.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 699 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 443/701 (63%), Positives = 541/701 (77%), Gaps = 22/701 (3%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA-----------------SDNYD 45 DDS DLFS +P + + + A +A SD+Y Sbjct: 2 DDSNDLFSGMPLSEKREEAQKPAAPVERPPAPAAPVAAAPPAAGASARPAPAASNSDDYG 61 Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG 105 ASSIR+LEGLEPVRMRPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+AN IEV LD G Sbjct: 62 ASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVYLDLEG 121 Query: 106 FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNAL 165 +LTV DNGRGIPVENHP+ P KSTLE+I+T LHAGGKFD YE SGGLHGVG+SVVNAL Sbjct: 122 YLTVSDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNAL 181 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 SD+L V VAR ++ Q+FSRG+P LE+ V N+RGTR+ F PDP+IFGD FDAA Sbjct: 182 SDDLEVEVARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHMKFDAA 241 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 R+ +M +SKAYL G V+ WSC+ + E +P+K F+FPGGLK YLQ + ++ Sbjct: 242 RVFRMARSKAYLFGGVEIRWSCESGVLPEGSEVPDKAVFHFPGGLKDYLQATMGKEFTVT 301 Query: 285 SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 EIF GKTEK + G++EWAI W +P++ SYCNTI T EGGTHE+GLR+ALT+G+K Sbjct: 302 REIFAGKTEK-VSGHGSMEWAITWYGGDPQVHSYCNTIPTTEGGTHEAGLRIALTKGLKA 360 Query: 345 YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 YAELTQNKRA I +DD+MISAVG+LSVFIREPEF GQTK +L +++AQR VENALRDPF Sbjct: 361 YAELTQNKRAAQITTDDVMISAVGMLSVFIREPEFVGQTKDRLATVEAQRIVENALRDPF 420 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 DHYL NP E+ KLL+WVIER+EERLRRRK++EVNRKTA+RKLRLPGKLADCSQN A G Sbjct: 421 DHYLADNPNESAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAVGA 480 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSAKQARNR+NQA+LPLRGKILNVASAG EK+ NQQ+ DLVQALGC T Sbjct: 481 ELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQLADLVQALGCGT 540 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 RS+YR+EDLRYE++I+MTDADVDGAHIASLL+TFFYQEM +L+ HLFL PPL++ITQ Sbjct: 541 RSKYRDEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLFLAVPPLYKITQ 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G KS YA D+ H+ ++++ K GK K+EISRFKGLGEM+ +QLKET MD +KRTLL+V Sbjct: 601 GAKSAYARDDNHRAELMQTEFK-GKAKVEISRFKGLGEMMPAQLKETTMDPSKRTLLKVL 659 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 I++ + T+ +++ LMGTK + RF+FIQ+RA+F +++ Sbjct: 660 IDEV--DFEGTRAAVDDLMGTKPEARFRFIQDRAAFAENLD 698 >gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681] gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681] Length = 636 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 261/647 (40%), Positives = 380/647 (58%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDA I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY + I+V + Sbjct: 7 SYDAGEIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDSIQVVVH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV H K KS LE+++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 67 EDNSVTVTDNGRGIPVSEHAKM-KKSALEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R ++ Q++ RG P + ++ GT+ TF PD +IF + + Sbjct: 126 NALSSKMIVHVKRDGHLYEQEYHRGAPQYDVRVIGDT-DETGTQTTFYPDDQIFTETTVY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + A+L+ + + ++ + F++ GG+ Y+Q + R Sbjct: 185 DYDTLQTRIRELAFLNKGIAISLTDER-------TGASDTFHYEGGISEYVQFLNQKREA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + VE A+ + + I S+ N I T EGGTHESG + ALTR Sbjct: 238 LHEQPIYVEGSRDMIQ---VEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + ++ DD+ I+SV I EP+F GQTKTKL + + + VE+ Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + +L +NP + ++++ ++ + R RK RE RK+A+ LPGKLADCS Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL+IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I ++ +I +V Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + RY KVIIMTDADVDGAHI +LLLTFFY+ M +I+ ++++ PP Sbjct: 475 AMGTGIGDDFDIAKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF++ + YA+ E + +I+ EF ++ K + R+KGLGEM A+QL ET MD R Sbjct: 535 LFKVERNKVVRYANSEAERDEIIREFGEN--AKYNVQRYKGLGEMNATQLWETTMDPESR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V ++ + N LMG + R FIQE A ++ ++ Sbjct: 593 TMLQVTVSDAM----LADTLFNTLMGDNVEPRRDFIQEHAKYVKNLD 635 >gi|295090282|emb|CBK76389.1| DNA gyrase subunit B [Clostridium cf. saccharolyticum K10] gi|295115477|emb|CBL36324.1| DNA gyrase subunit B [butyrate-producing bacterium SM4/1] Length = 636 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 253/644 (39%), Positives = 370/644 (57%), Gaps = 20/644 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + I+V + Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNSVDEALAGFCSEIDVQI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV+ K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 63 NADNSITVTDNGRGIPVDIQKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS+ L V + + I++Q++ RG + PL K +K GTR+TF PD +IF + Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYERGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K D+E +++ F++ GG+K ++ Sbjct: 182 -YDYDTLKVRLRETAFLTKNLKIILRDDRE------EKQEKTFHYEGGIKEFVTYLNRGG 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + + + + VE A+ + I ++ N I T EGGTH SG + ALT Sbjct: 235 ESLYAPVIYCEGVRDNVY---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALT 291 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 YA + + +D+ I+SV + EP+F GQTK KL + +A+ V Sbjct: 292 NTFNDYARKNKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVA 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456 + + ++L QNP A + E I R R+ RK+A+ L LPGKLADC Sbjct: 352 GIVSEQLTYFLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E+++VEGDSAGGSAK+AR+++NQA+LPLRGKILNV A +KI N +I + Sbjct: 412 SDKNPENCEIYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I + + YA+ + IL E + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 +R LLRV +++ + + + LMG + + R +FI+ A + Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKY 631 >gi|212697384|ref|ZP_03305512.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM 7454] gi|212675576|gb|EEB35183.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM 7454] Length = 634 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 260/647 (40%), Positives = 387/647 (59%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL EV+DN++DE +AG + I++S+D Sbjct: 5 QYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISID 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +TV D+G GIP+E HP+ KSTLE +LT LHAGGKFD+ Y++SGGLHGVG+SVV Sbjct: 65 ENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V R+ I+ F RG S LE + GT+I+F+ DP+IF + Sbjct: 124 NALSEYLIAEVKREGHIYRMTFERGKSTSDLEIIGDTKE-TGTKISFKADPEIFDVTV-Y 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + A+L+ V+ + ++ +E EF + GG+K +++ N++ Sbjct: 182 NKNTLENRFREMAFLNKGVRLIFEDKRDESE-------VEFKYDGGIKEFVKYLNRNKTP 234 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I EI + ++ T VE + + + I ++ N I T EGGTH SG R ALTR Sbjct: 235 IFKEIPYFEGRQEST---EVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRS 291 Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + ++ DD I+SV I P+F GQTK KL + + + V+ Sbjct: 292 VNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAF 351 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + +L +NP A +++ + R RK R+ +++ + LPGKLADC Sbjct: 352 FSEHMGSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQS 411 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A ++I N ++I ++ Sbjct: 412 QDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMIT 471 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M L+++ H+++ PP Sbjct: 472 AFGTGIGQEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPP 531 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++++ G K Y + ++ ++I++E+K +ISR+KGLGEM A QL ET MD R Sbjct: 532 LYKVSSGKKERYCYTDKELEEIVKEWKTDN---YKISRYKGLGEMNAEQLWETTMDPENR 588 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + +S T + + LMG K + R +FI+E A +++++ Sbjct: 589 VLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633 >gi|49474260|ref|YP_032302.1| DNA topoisomerase IV subunit B [Bartonella quintana str. Toulouse] gi|49239764|emb|CAF26151.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse] Length = 685 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 428/688 (62%), Positives = 528/688 (76%), Gaps = 7/688 (1%) Query: 1 MTDDSIDLFSTLPPQSQG--SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M+D + DLFS L + EK K + + DNY+A SIR+L+GLEPV Sbjct: 1 MSDKNKDLFSILNKAQSQINTKEKNLKPSTSSEVMTSKKDTQEDNYNALSIRVLKGLEPV 60 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R+RPGMYIGGTD KALHHLF+E+IDNAMDE +AGYA+LI+VSL+ NG+LTV DNGRGIPV Sbjct: 61 RLRPGMYIGGTDSKALHHLFAEIIDNAMDEAVAGYADLIDVSLERNGYLTVTDNGRGIPV 120 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 ENHP+ +KSTLE+I+T LH+GGKFD Y+ +GGLHGVGISVVNALSD++ V VAR+ Sbjct: 121 ENHPQMLDKSTLEVIMTQLHSGGKFDGKAYQTAGGLHGVGISVVNALSDDMEVEVARERK 180 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 ++ Q+FSRGIP S LE V N+RGTR+ F PD +IFG+KA FD ++ +M +SKAYL Sbjct: 181 LYRQRFSRGIPQSRLEDLGYVYNRRGTRVRFHPDSEIFGEKAAFDPEKIYEMARSKAYLF 240 Query: 239 GRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 G VK W+CD I E IPEK F+FP GLK YL + L++ ++SEIF+GKT+ Sbjct: 241 GGVKIRWNCDPVILEGTKNIPEKAVFHFPDGLKDYLLSSLKDEYRVTSEIFSGKTKHYND 300 Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 H ++EWAIAW NP + SYCNTI T EGGTHE GLR AL RG+K YAEL NKRA I Sbjct: 301 HS-SIEWAIAWHGGNPYVQSYCNTIPTREGGTHEIGLRQALLRGLKSYAELIGNKRAAVI 359 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 SDD+MIS ILSVFI+ PEF GQTK +L +++AQR VENA+RDPFDH+L +P E+TK Sbjct: 360 TSDDVMISTAAILSVFIKNPEFVGQTKDRLATIEAQRIVENAIRDPFDHWLTNSPQESTK 419 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVIER+EER+RRR+ RE+NRKTA+RKLRLPGKLADCSQN A G ELFIVEGDSAGGS Sbjct: 420 LLDWVIERAEERIRRRQDREINRKTAVRKLRLPGKLADCSQNCAAGAELFIVEGDSAGGS 479 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQARNR+NQA+LPLRGKILNVASA EK+ ++Q I DL+ ALGC TRS+YRE+DLRYE+ Sbjct: 480 AKQARNRANQAILPLRGKILNVASAAHEKMNSSQTIGDLILALGCGTRSKYREKDLRYER 539 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHIASLL+TFF+QEM DLI Q HL+L PPL+RI+QG K YA D+ HK Sbjct: 540 IIIMTDADVDGAHIASLLITFFFQEMPDLIRQGHLYLAVPPLYRISQGGKVAYARDDTHK 599 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++L+ + GK KIEI RFKGLGEM A QLKET M KRTLLRV I D+ +++T+ Sbjct: 600 NELLKT-EFTGKAKIEIGRFKGLGEMRAEQLKETTMHPQKRTLLRVSI--DIAEMQETKH 656 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 ++ LMGTK++ RF+FIQE ++F ++ Sbjct: 657 TVESLMGTKSEARFRFIQENSTFASNLD 684 >gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6] Length = 633 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 254/650 (39%), Positives = 372/650 (57%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 AEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ I FSRG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSEWTKVQVSQNGIIQEIDFSRGHKTSELHEIGKAEG-TGTTVIFKPDSEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRIESFHYEGGLSSFITFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + +++ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801] gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802] gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801] gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802] Length = 641 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 256/652 (39%), Positives = 374/652 (57%), Gaps = 19/652 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + +Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IE+ Sbjct: 2 TTSDYGAQQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G +TV D+GRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVGI Sbjct: 62 DINSDGSVTVTDDGRGIPTDIHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGI 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ ++VTV R+ I +Q++ RG P++ L + GT I+F PD +IF Sbjct: 121 SVVNALSEWVNVTVWREGNIHTQRYERGNPVTSLAANPDPDHSTGTSISFLPDIEIFSGG 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L + AYL+ VK ++ ++ +E + + GG+K Y+ + Sbjct: 181 IEFDYNTLSGRLRELAYLNAGVKITFTDNR-----PAEIHQETYCYEGGIKEYVAYMCRD 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + +I EK G + V + + + N I T +GGTH GL+ LT Sbjct: 236 KDALHQDIIYVSGEKNGV-QIEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLT 294 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I A + ++ +++ G++SV + EPEF GQTKTKL + + + V+ Sbjct: 295 RTINNVARKRNKIKENEANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVD 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + + YL NP A ++E ++ + R+ RE V RK+ + LPGKLADC Sbjct: 355 SLVGEVLNEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L Sbjct: 415 STRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSL 474 Query: 517 VQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ LRY +V+IMTDADVDGAHI +LLLTFFY+ +L++Q ++++ Sbjct: 475 ITALGLGIKGEEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIA 534 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G VY ++E Q+ L + I RFKGLGEM+ +QL ET M+ Sbjct: 535 CPPLYKVERGRNHVYCYNERELQEHLNSLPANAN--YTIQRFKGLGEMMPTQLWETTMNP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RT+ RVEI + LMG + R +FI+ + D+ Sbjct: 593 ETRTMKRVEIED----AAEADRIFTVLMGDRVAPRREFIETYGPKLNLTDLD 640 >gi|283797181|ref|ZP_06346334.1| DNA gyrase, B subunit [Clostridium sp. M62/1] gi|291075139|gb|EFE12503.1| DNA gyrase, B subunit [Clostridium sp. M62/1] Length = 636 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 252/644 (39%), Positives = 370/644 (57%), Gaps = 20/644 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ + I+V + Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTSIRGLHHLVYEIVDNSVDEALAGFCSEIDVQI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRGIPV+ K +E++ T LHAGGKF Y++SGGLHGVG SV Sbjct: 63 NADNSITVTDNGRGIPVDIQKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS+ L V + + I++Q++ +G + PL K +K GTR+TF PD +IF + Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYEKGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K D+E +++ F++ GG+K ++ Sbjct: 182 -YDYDTLKVRLRETAFLTKNLKIILRDDRE------EKQEKTFHYEGGIKEFVTYLNRGG 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + + + + VE A+ + I ++ N I T EGGTH SG + ALT Sbjct: 235 ESLYAPVIYCEGVRDNVY---VEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALT 291 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 YA + + +D+ I+SV + EP+F GQTK KL + +A+ V Sbjct: 292 NTFNDYARKNKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVA 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456 + + ++L QNP A + E I R R+ RK+A+ L LPGKLADC Sbjct: 352 GIVSEQLTYFLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADC 411 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S E+++VEGDSAGGSAK+AR+++NQA+LPLRGKILNV A +KI N +I + Sbjct: 412 SDKNPENCEIYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSM 471 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+IIMTDADVDGAHI++LLLTF Y+ M +LI+Q +++L Sbjct: 472 ITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I + + YA+ + IL E + K I R+KGLGEM A QL ET MD Sbjct: 532 PPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNK--IQRYKGLGEMDAEQLWETTMDPE 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 +R LLRV +++ + + + LMG + + R +FI+ A + Sbjct: 590 RRILLRVTMDE--ETTSEVDLTFTTLMGDQVEPRREFIEANAKY 631 >gi|149278877|ref|ZP_01885012.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase) [Pedobacter sp. BAL39] gi|149230496|gb|EDM35880.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase) [Pedobacter sp. BAL39] Length = 652 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 256/662 (38%), Positives = 381/662 (57%), Gaps = 21/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NY A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AG+A Sbjct: 2 SEENDPKSNYSADNIQVLEGLEAVRKRPSMYIGDTGIKGLHHLVYEVVDNSIDEALAGHA 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ + + V DNGRGIP + K NKS LEI++T LHAGGKFD TY++SGGL Sbjct: 62 DTIYVNILEDNSIRVEDNGRGIPTGINKK-ENKSALEIVMTVLHAGGKFDKDTYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L V R+ I+ Q+++ G PL ++ + +KRGT +TF PDP Sbjct: 121 HGVGVSCVNALSTHLKAEVHREGQIWMQEYNIGKPLYDVKLVGET-DKRGTIVTFSPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + ++L+ +K + ++E + G E F+ GGLK ++Q Sbjct: 180 IFTQTTEYRYDTLAARLRELSFLNKGIKLTLTDERE-TDADGNFITELFHSEGGLKEFVQ 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 R + +E + K G VE A+ + + + SY N I T EGGTH +G Sbjct: 239 FLDGGRPSLIAEPIYVEGIKNGIP---VELALQYNDSYAENVHSYVNNINTHEGGTHIAG 295 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +K YA+ + + + DD ++SV ++EP+F GQTKTKL + + Sbjct: 296 FRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + ++YL +NP EA ++ VI + R+ + V RK+ + LP Sbjct: 356 VMGAVDVAVGEALNNYLEENPREAKLIVNKVILAATARAAARKAREMVQRKSVMGGSGLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS + E+++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV A KI N Sbjct: 416 GKLADCSDSDPEKCEIYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYEN 475 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I ++ ALG + ++ LRY KV+IMTDAD+DG+HI +L+LTFF++ M Sbjct: 476 DEIKNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSHITTLILTFFFRYMKA 535 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 LIE ++++ +PPL+++ +G + Y +++ + ++ K GK + I R+KGLGEM Sbjct: 536 LIEAGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKEESVHIQRYKGLGEMN 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL +T ++ RTLL+ I + + LMG + R FI+ A + + Sbjct: 596 AEQLWDTTLNPQTRTLLQATIENAAEC----DHTFSMLMGDEVGPRRDFIERNAKYAK-I 650 Query: 685 GT 686 Sbjct: 651 DA 652 >gi|256848502|ref|ZP_05553944.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714769|gb|EEU29748.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN] Length = 656 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 250/669 (37%), Positives = 371/669 (55%), Gaps = 21/669 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 K E+ + A YDAS I++L+GLE VR RPGMYIG T + LHHL E++ Sbjct: 2 SDKERELQEEKAEKKAELGSKYDASQIQVLKGLEAVRKRPGMYIGSTTAQGLHHLVWEIV 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN +DE +AG+ + I V ++ + +TV DNGRGIPV+ K K LE + T LHAGGK Sbjct: 62 DNGIDEALAGFTDEINVVVEPDNSITVTDNGRGIPVDIQ-KETGKPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VR 200 F N Y++SGGLHGVG SVVNALS EL V VARQ + F G +P++ ++ Sbjct: 121 FGNGGYKVSGGLHGVGASVVNALSTELDVRVARQGKEYYMDFQGGHVKTPMKVIKEGLPE 180 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GT + F+PDP IF + ++ L + A+L+ +K + + Sbjct: 181 TQHGTIVHFKPDPDIFRETTVYNIKTLTDRIRELAFLNKGLKITIEDKRNDEDNRQE--- 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319 F++ GG++ Y++ LI + E G TVE ++ + ++ Sbjct: 238 --FHYEGGIRHYVEFLNRGHELIFDPPIYVEGEYNGI---TVEVSLQYTSGYRCNLLTFT 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREP 377 N I T EGG+HE+G + ALTR I Y + + + DD+ ++S+ P Sbjct: 293 NNIHTYEGGSHETGFKTALTRVINDYGRKSGQLKGNNSTLSGDDVREGLTAVVSIKHPNP 352 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + DA+ ++ + + +++++P A K++E + S+ R+ ++ RE Sbjct: 353 QFEGQTKTKLSNSDARTATDHIFSETMNRFMMEHPDTAKKIVEKGMLASKARVAAKRARE 412 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 +K+ + LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKI Sbjct: 413 VTRKKSGLEISNLPGKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKI 472 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++ N +I L ALG + Y K+IIMTDADVDGAHI +LLL Sbjct: 473 LNVEKASLNRVLANDEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLL 532 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 T FY+ M +IE+ ++++ PPL+++ QG Y +E ++++ + K I R Sbjct: 533 TLFYRFMRPMIEKGYVYIAQPPLYQVRQGKFVKYIETDEELEQVVNSLQPS--PKPVIQR 590 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM A QL ET MD R LLRV+++ + + LMGTK R FI++ Sbjct: 591 YKGLGEMDAEQLWETTMDPENRHLLRVDLDDAAAAD----EIFPMLMGTKVGPRRDFIEK 646 Query: 677 RASFIDDVG 685 A+F+ ++ Sbjct: 647 NATFVKNLD 655 >gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359] gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359] Length = 647 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 260/655 (39%), Positives = 381/655 (58%), Gaps = 26/655 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y A I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY Sbjct: 12 SEQKKVSYGADQIQVLEGLEAVRKRPGMYIGSTSLKGLHHLVYEVVDNSIDEALAGYCTH 71 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+++ + +TVVDNGRGIPV H K +E++LT LHAGGKF Y ISGGLHG Sbjct: 72 IEVTIEEDNSITVVDNGRGIPVAMHK--IGKPAVEVVLTVLHAGGKFGGDGYPISGGLHG 129 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPK 214 VGISVVNALS++ + V R ++ F+RG+ ++ LEK + +RGT++ F+PD + Sbjct: 130 VGISVVNALSEQTEIEVKRDGFLWKISFARGLTVNSLEKVRPLEEGEERGTKVWFKPDSE 189 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF D +D L + A+L+ + + + +KE +Y+ GGL +++Q Sbjct: 190 IFPDTV-YDFETLKIRLRELAFLNKGLTITLADKR-------TDKKEIYYYEGGLTSFVQ 241 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ENR+ ++ + + + K V+ A+ + + I ++ N I T+EGGTH SG Sbjct: 242 FLNENRTPVNQTVISLEGIKSDV---VVDIALQYNDGYSENILTFVNNIFTEEGGTHLSG 298 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR I Y + + ++ +D+ I+SV +REP+F GQTKTKL + + Sbjct: 299 FRSGLTRTINDYGRSSGIIKENEDNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSE 358 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 + V+N + D + ++P EA ++ I + R RK RK A+ LP Sbjct: 359 VKGIVDNIISDGLKEFFEEHPAEAKSIVTKNINAARARQAARKARELTRRKNALEISSLP 418 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A +KI N Sbjct: 419 GKLADCSEKNPDMTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILAN 478 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ A G ++ RY+K+IIMTDADVDGAHI +LLLTFFY+ M LI + Sbjct: 479 EEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEG 538 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H+++ PPL+++ +G Y + ++ L E + R+KGLGEM QL E Sbjct: 539 HVYIAQPPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAV---VQRYKGLGEMNPEQLWE 595 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD RT+L+VE+ + + + LMG K + R KFIQ+ A + ++ Sbjct: 596 TTMDPQFRTMLKVELEDAV----EADRIFSVLMGDKVEPRRKFIQDNAKKVRNLD 646 >gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a] Length = 633 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 372/650 (57%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 AEENYGAQNIQVLEGLDAVRKRPGMYIGSTSIRGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINEDNSITVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ I F+RG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSEWTKVQVSQNGIIQEIDFARGHKTSELHEIGKAEG-TGTTVIFKPDSEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FNFDTLKIRLQELAFLNKGLRITLSDLR-----QEEPRIESFHYEGGLSSFITFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + +++ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEVVNPTVIDIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVSEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDG---ITIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk] Length = 627 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 259/644 (40%), Positives = 375/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIVVTDDGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R I QK+ RG+P + L+ + ++ GT F+PD +IF + Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E K G VE A+ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVDGSKDGIQ---VEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K+++ + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLL FFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLMFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++ + +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87] gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87] Length = 644 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 252/657 (38%), Positives = 383/657 (58%), Gaps = 21/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 4 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 63 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 64 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 122 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R +TI+ Q + +G+P L++ + ++ GT I F+ D Sbjct: 123 GLHGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKAD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ E+ ++ +++ GG+K+Y Sbjct: 182 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEGREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ + E K VE A+ + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPLHEEPIYIHQTKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRILNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L ++P ++E I S R+ +K RE RK+A+ Sbjct: 354 SEVRQVVDKLFAEYFERFLFEHPAVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ E + K ISR+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470] gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470] Length = 649 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 255/654 (38%), Positives = 374/654 (57%), Gaps = 22/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 A ++ +Y A IR+LEGLE VR+RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 13 AGENGKSDYGAKDIRVLEGLEAVRLRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGFCT 72 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+L+ +G T+ DNGRGIP H K +E++LT LHAGGKF Y ISGGLH Sbjct: 73 HIEVTLNDDGSCTITDNGRGIPTGLHE--TGKPAMEVVLTVLHAGGKFGGDGYPISGGLH 130 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVV ALS+ VTV R+ K +RG+ ++ + T++TF+PD +I Sbjct: 131 GVGISVVTALSEWTTVTVKREGHFHEMKLARGVVTQHMKTFGETTETG-TQVTFKPDGEI 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ + + ++ A ++ F + GG+ +++ Sbjct: 190 FKEGTDFDYDTLKVRMRELAFLNKGLTITLTDVRDGA-----THQDVFCYAGGIVEFIKF 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 E + L+ + + + EK R V+ A+ + + ++ N I T EGG H +G Sbjct: 245 LNEGKDLVDPGVISFEGEKD---RVIVDIAMQYQAGYSESMYTFVNNINTVEGGMHLTGF 301 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA ++ DD+ ++SV + P+F GQTKTKL + D Sbjct: 302 RNALTRTINDYARSNNLLKPNEENLSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNQDV 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V+ + D YL ++P EA +++ I + R R+ RE RK A+ LPG Sbjct: 362 KGIVDTIVSDGLRTYLEEHPAEAKEIISKSITANRAREAARRARELTRRKNALEVSSLPG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ TE++IVEGDSAGGSAK R+R QA+LPLRGKILNV A +K+ N+ Sbjct: 422 KLADCSEKDPKFTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARLDKVLNSD 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I ++ A G + + LRY K+IIMTDADVDGAHI +LLLTFFY+ M LI + H Sbjct: 482 AIRTMITAFGTGVAEDFDIKKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGH 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++ +G + Y +D+ + K+L E + G I R+KGLGEM QL +T Sbjct: 542 VYIAQPPLYQVRKGRQKYYTYDDVEQDKLLNEIGRDGCA---IQRYKGLGEMNPEQLWDT 598 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ +R +L+VE+ + + LMG K + R KFI++ A + ++ Sbjct: 599 TMNPEQRVMLKVELTDAV----EADRLFTILMGDKVEPRRKFIEDNAKNVSNLD 648 >gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 636 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 267/649 (41%), Positives = 383/649 (59%), Gaps = 22/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YD S+I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGYAN I+V+ Sbjct: 5 EQTYDESNIQVLEGLEAVRKRPGMYIGSTSVRGLHHLVWEVVDNSIDEALAGYANKIDVT 64 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +TV DNGRGIPV + K STLE+++T LHAGGKF Y++SGGLHGVG+S Sbjct: 65 VHPDNSVTVEDNGRGIPVGMNEKLQK-STLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVS 123 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS ++ V V R I+ Q++ RG P + T+ TF PDP+IF + Sbjct: 124 VVNALSTKVIVEVKRDGHIYQQEYHRGTPQYDVRVIGDTTETG-TKTTFYPDPEIFTETT 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD LL + A+L+ + + ++ + E F++ GG+ Y++ +NR Sbjct: 183 VFDYNTLLTRIRELAFLNKGINISLTDER-------TGQSESFHYEGGIMEYVRFLNQNR 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ E + ++ VE ++ + + I S+ N I T EGGTHESG + ALT Sbjct: 236 EVLHEEPIYVEGQRDMIQ---VEISLQYNDGYTENIYSFANNIHTHEGGTHESGFKSALT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA T + ++ DD+ I+SV I EP+F GQTKTKL + + + VE Sbjct: 293 RIINDYARKTGMIKENDSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVE 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + ++ +NP + ++LE ++ S R RK RE RK+A+ LPGKLADC Sbjct: 353 SLFAEKLQEFMDENPSVSRRILEKSLQASRAREAARKARELTRRKSALEVSALPGKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I N +I + Sbjct: 413 SSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAI 472 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + RY K+IIMTDADVDGAHI +LLLTFF++ M +IE ++++ Sbjct: 473 ITALGTGIGEDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKIIEAGYVYIAQ 532 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I + YA+ E+ + +I+ EF + K+ + R+KGLGEM A QL ET MD Sbjct: 533 PPLFKIERNKVVRYANSEKERDQIIAEFGE--GAKVNVQRYKGLGEMNAEQLWETTMDPE 590 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + +V I+ + + LMG + R +FI E A ++ ++ Sbjct: 591 SRVMQQVSISDAI----QADAIFDTLMGDNVEPRREFIHEHAKYVKNLD 635 >gi|330837805|ref|YP_004412446.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374] gi|329749708|gb|AEC03064.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374] Length = 660 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 252/679 (37%), Positives = 382/679 (56%), Gaps = 25/679 (3%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + K P A+ S Y A+SI++L+GLE VR RPGMYIG T Sbjct: 1 MDDTQQREAGKKPALHHAP----MADAEGSRKYTANSIQVLKGLEAVRKRPGMYIGSTGI 56 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGY + I ++++ +TV DNGRGIPV+ HP NKSTLE Sbjct: 57 EGLHHLVYEIVDNSIDEAMAGYCDYIRITIEPGQIITVEDNGRGIPVDIHP-VENKSTLE 115 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++LT LHAGGKFD +Y++SGGLHGVG SVVNALS+ + VTV R ++ Q + +GIP + Sbjct: 116 VVLTMLHAGGKFDKGSYKVSGGLHGVGSSVVNALSEWMEVTVHRAPNVYRQVYHKGIPDA 175 Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 P+E + ++ GT + F+ D I + L + + A+L+ + ++ Sbjct: 176 PVEVIGQT-DRTGTIVRFKADTTIMDTD-EYSYTTLAERFRELAFLNKGITISVGDERTE 233 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 +K F F GG+K++++ +N I E + EK ++ A+ + + Sbjct: 234 EKKERN-----FCFEGGIKSFVEYLNKNNKTIHPEPIFFEREKDD---LKIDIALQYNDR 285 Query: 312 NPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN---KRAISIISDDLMISAV 367 EI + N I T EGGTH SG R +TR + + + K + +DDL Sbjct: 286 YDEILYTFVNNINTREGGTHLSGFRSGMTRAVNEQLKKNAKLTKKFTDPLTTDDLREGLT 345 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427 I+S+ I +P+F GQTK KL + Q V + + + +Y + P +LE + ++ Sbjct: 346 AIVSIKIPDPQFEGQTKMKLGNQRVQGIVTSVVYENLTNYFDEFPAVTEMILEKCVSAAK 405 Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 + + + L LPGKLA C++ +E+FIVEGDSAGGSAKQ R+R Q Sbjct: 406 A-RMAARDARARVRKSAEGLGLPGKLAPCAEKDPAKSEIFIVEGDSAGGSAKQGRDRQCQ 464 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 A+LPL GK+LNV A EK+ +N ++ ++ +LG S + E +RY KVIIM DADVD Sbjct: 465 AILPLWGKMLNVEKAREEKVMDNDKLTPVIASLGAGLGSHFDAEKVRYHKVIIMADADVD 524 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 G+HI +LLLTFF++ M LIE+ +++ PPL++IT G YA+DE+ + +IL E Sbjct: 525 GSHIRTLLLTFFFRYMRPLIEKGYVYFAMPPLYKITVGKSVSYAYDEDARVRILTENNVG 584 Query: 608 GKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 G K I R+KGLGEM QL ET M+ + R + +V + + + + LMG + Sbjct: 585 PDGNKAAIQRYKGLGEMNPDQLWETTMNPDTRMITQVCLEDAI----EADQVFSMLMGEE 640 Query: 667 ADERFKFIQERASFIDDVG 685 + R FI+E A+++ ++ Sbjct: 641 VEPRRVFIEENATYVSNLD 659 >gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14] gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14] Length = 639 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 383/655 (58%), Gaps = 21/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS +L V V R +TI+ Q + +G+P L++ + ++ GT I F+ D + Sbjct: 120 HGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + + A+L+ ++ E+ ++ +++ GG+K+Y++ Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEGREDSYHYEGGIKSYVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ + E K VE A+ + + +Y N I T EGGTHE G Sbjct: 234 LLNENKEPLHEEPIYIHQTKDDI---EVEIALQYNSGYATNLLTYANNIHTYEGGTHEDG 290 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + + +D I+S+ +P+F GQTKTKL + + Sbjct: 291 FKRALTRILNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 ++ V+ + F+ +L ++P ++E + S R+ +K RE RK+A+ LP Sbjct: 351 VRQVVDKLFAEYFERFLFEHPAVGRIIVEKGVMASRARVAAKKAREVTRRKSALDVSSLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I NN Sbjct: 411 GKLADCSSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 471 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y ++ K+ E + K ISR+KGLGEM A QL E Sbjct: 531 YVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQLWE 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 589 TTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 638 >gi|164686442|ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM 16795] gi|164604453|gb|EDQ97918.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM 16795] Length = 633 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 375/648 (57%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A+ I++LEGLE VR+RPGMYIG T + LHHL E++DN++DE + GY + I V + Sbjct: 3 QEYGANQIQVLEGLEAVRLRPGMYIGSTGPRGLHHLVYEIVDNSIDEALQGYCDRIYVCI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +T D+GRGIPVE HPK KSTLE +LT LHAGGKF Y++SGGLHGVGISV Sbjct: 63 NEDGSVTTKDDGRGIPVETHPK-TGKSTLETVLTILHAGGKFGGGGYKVSGGLHGVGISV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VN LS+ L V R I+ Q + +GI S LE + + GT I F PD IF D Sbjct: 122 VNGLSEWLVAEVYRNGKIYRQSYKKGITDSELEIVGE-SDHTGTIIQFMPDATIFDDIV- 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L+ V+ + + E+ F + GG++ +++ ++ Sbjct: 180 FDYKTLETRLRELAFLNKGVRIVFEDKRPGQEQKKE-----FLYDGGIREFVEYLNSTKT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + K VE AI + + I S+ N I T EGG H +G + ALT+ Sbjct: 235 PIHENVVYI---DKKIQDCMVEIAIQYTDGYSENILSFANNIDTHEGGAHLAGFKAALTK 291 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ + + ++ +D+ ++SV + +P+F GQTKTKL + + V+ Sbjct: 292 TVNEYAKRNKLLKENDANLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTRMRGIVDA 351 Query: 399 ALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + +L +NP + +++ + + +R + RKT + LPGKLADC+ Sbjct: 352 VTVEELGAFLEENPQTSRIIVDKALRAQRAREAAKRARELTRRKTVLESTSLPGKLADCA 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + ++I ++ +I +++ Sbjct: 412 EKDPAKSEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKSRLDRILSSDEIKNMI 471 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + + E RY K++IMTDADVDGAHI +LLLTFF++ M LI+ ++++ P Sbjct: 472 TAYGCGVGNDFDLEKARYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQP 531 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K Y + ++ + +LEE GK IE+ R+KGLGEM QL ET M+ Sbjct: 532 PLYKVKKQKKEYYVYSDKQLEALLEEI---GKSGIELQRYKGLGEMNPEQLWETTMNPET 588 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ + + LMG K R +FI+E A F+ ++ Sbjct: 589 RTLLQVTIDDAT----EADRIFSMLMGDKVGPRKEFIEENAEFVKNLD 632 >gi|332170655|gb|AEE19910.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 647 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 383/660 (58%), Gaps = 23/660 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY Sbjct: 1 MSDDAKKKEYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V+++ N +T DNGRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DAIDVTINENNSITTRDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L TV ++ I+ Q++ RG + P++ + GT +TF PD Sbjct: 120 HGVGVSCVNALSNHLRATVYKEGKIWEQEYERGKAMYPVKVIGDT-DFTGTEVTFLPDDS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + AYL+ + + + EK E E F+ GL +++ Sbjct: 179 IFQQTTEYSYDTLASRLRELAYLNKGITITLTDKRVKNEKG-EHETETFHSKEGLSEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR+ I E+ + + EK G VE A+ + + + SY N I T EGGTH +G Sbjct: 238 FLDGNRTPIIGEVISMEGEKNGIP---VEVAMIYNDSYAENLHSYVNNINTHEGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KK+A+ + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + + Y+ +NP +A +++ VI ++ R +K RE+ RKT + LP Sbjct: 355 VTSAVSQAVAEMIEIYMEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A S K+ N Sbjct: 415 GKLSDCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMSHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KV+IM DADVDG+HI++L+LTFF++ M + Sbjct: 475 EEIKNIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E ++++ +PPL+ + +G K YA +++ + I + G + I R+KGLGEM A Sbjct: 535 LVENGYVYIATPPLYLVKKGQKKQYAWNDKERDAIADSM---GTQGVSIQRYKGLGEMNA 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ + + LMG + R +FI++ A + ++ Sbjct: 592 EQLWDTTMNPEFRTLRQVAIDNGT----EADRIFSMLMGDEVPPRREFIEKNAIYA-NID 646 >gi|313904729|ref|ZP_07838103.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6] gi|313470522|gb|EFR65850.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6] Length = 645 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 261/656 (39%), Positives = 376/656 (57%), Gaps = 19/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 3 TESTVVTNEYGADQIQILEGLEAVRKRPGMYIGTTSIRGLHHLVYEIVDNSVDEALAGYC 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV+++ + +TVVD+GRGIPV + K +E++ T LHAGGKF Y++SGGL Sbjct: 63 SHIEVTINQDNSITVVDDGRGIPVGINKKA-GIPAVEVVFTVLHAGGKFGGGGYKVSGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG SVVNALSD L V + I+ Q++ RG + L+ + K GTR+ F+PD Sbjct: 122 HGVGASVVNALSDWLEVQIYHDGKIYKQRYERGKTMYKLKVVGECDPEKTGTRVDFKPDG 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + +D L + A+L+ +K +E E +++ F++ GG+K ++ Sbjct: 182 TIFEETV-YDFKTLKTRLRETAFLTKGLKITLRDAREGQE-----QEKVFHYEGGIKEFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q ++ + +I + + VE ++ + + + N ILT EGG H Sbjct: 236 QYLNKSNEGLYQDILYFEGVQNDV---VVEVSMQHNDSYNETVYGFVNNILTPEGGMHVM 292 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR Y + + ++ +D+ I+SV I +P+F GQTK KL + Sbjct: 293 GFRQALTRTFNDYGRKMKLLKDNDENLSGEDIREGLTAIISVKIGDPQFEGQTKQKLGNS 352 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 +A+ V+ + YL Q+P ++E + R RK R+ RKTA+ L L Sbjct: 353 EARSAVDAVVSKQLGIYLEQHPDVGKTIIEKSLVSQRAREAARKARDLTRRKTALDGLAL 412 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E+FIVEGDSAGGSAK ARNR QA+LPLRGKILNV A ++I Sbjct: 413 PGKLADCSDKDPKHCEIFIVEGDSAGGSAKVARNRRTQAILPLRGKILNVEKARLDRIYG 472 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G + LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M +LI+ Sbjct: 473 NAEIRSMITAFGTGIHDDFDLSKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKS 532 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H++L PPL+++ + K YA+ +E KI+ E + G + I R+KGLGEM A QL Sbjct: 533 GHVYLAKPPLYKVERNKKVWYAYSDEELNKIMNEIGRDGGNR--IQRYKGLGEMDADQLW 590 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R LLRV ++ D + + LMG K + R +FI+ERA + ++ Sbjct: 591 ETTMDPENRVLLRVNMDDD--DASEIDLTFTTLMGDKVEPRREFIEERAKDVQNLD 644 >gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301] gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301] gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] Length = 645 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 263/642 (40%), Positives = 372/642 (57%), Gaps = 12/642 (1%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y AS I++LEGLEPVR RPGMYIG T K LHHL EV+DNA+DE +AGY N I+V Sbjct: 2 ANEYGASQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDVR 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G V DNGRGIP + HP+ KS LE +LT LHAGGKF Y++SGGLHGVG+S Sbjct: 62 LLEDGSCQVTDNGRGIPTDIHPQ-TGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R+ Q+F +G P+ L+ ++RGT++ F+PD IF + Sbjct: 121 VVNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETT 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ V+ ++ ++ K P +E +YF GG++ Y+ ++ Sbjct: 181 EFDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + SEI ++EK G + + I + N I T +GGTH GL+ LTR Sbjct: 241 QALHSEIIFVQSEKDGV-QVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTR 299 Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A ++ ++ +++ I+SV + +PEF GQTKTKL + + + V+ Sbjct: 300 TMNTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDT 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +LE I+ R+ RE V RK+ + LPGKLADCS Sbjct: 360 LVGETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY +++IMTDADVDGAHI +LLLTFFY+ L+EQ ++++ Sbjct: 480 TALGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y ++E Q+ + F ++ I RFKGLGEM+ QL ET MD Sbjct: 540 PPLYKLERGRNHYYCYNERELQERIATFPENAN--YTIQRFKGLGEMMPQQLWETTMDPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 RT+ RVEI + LMG + R +FI+ Sbjct: 598 TRTMKRVEIED----AAEADRIFTILMGDRVQPRREFIETYG 635 >gi|209885135|ref|YP_002288993.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5] gi|209873331|gb|ACI93127.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5] Length = 689 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 382/675 (56%), Positives = 492/675 (72%), Gaps = 7/675 (1%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69 S+ ++ +P SA Y A+ I +LEGLEPVR RPGMYIGGT Sbjct: 12 SSSAKPDSDLFGSGGRAPRGSAAPPARTTSAEGGYTAADIEVLEGLEPVRRRPGMYIGGT 71 Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 DEKALHHLF+EVIDN+MDE +AG+A+ IEVSL +G+LTVVDNGRGIPV+ HPKF NKS Sbjct: 72 DEKALHHLFAEVIDNSMDEALAGHASFIEVSLGADGYLTVVDNGRGIPVDPHPKFKNKSA 131 Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189 LEII+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS EL V VAR ++ F RG P Sbjct: 132 LEIIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSELIVEVARNQKLYRMTFERGKP 191 Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 LE+ KV N+RGT + F+PD +IFG+KA F RL +M +SKAYL G V+ W C Sbjct: 192 KGKLEELGKVHNRRGTSVRFKPDTEIFGNKAVFKPQRLFQMARSKAYLFGGVEIRWRCAP 251 Query: 250 EIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 E+ + +P ++ F+FPGGLK YL + +L+ +IF GKT + G H G EWA+AW Sbjct: 252 ELLKGLDSVPAEDTFHFPGGLKDYLAAAVHADTLVHPDIFAGKTGRNGAH-GACEWAVAW 310 Query: 309 C-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366 + + ++SY NT+ T +GGTHE+G+R AL RGI+ +AE T K+A SI S+D+M+ A Sbjct: 311 TADADGFMSSYTNTVPTPDGGTHETGMRSALLRGIRDHAERTGQGKKASSITSEDVMVGA 370 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L NP +A KLLE++IER+ Sbjct: 371 AVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPTQANKLLEFIIERA 430 Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486 +ERLRRR ++E++RKTA++KLRLPGKLADC+ A G+ELFIVEGDSAGGSAKQAR+R Sbjct: 431 DERLRRRAEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKT 490 Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546 QA+LPLRGKILNVASA +K+ N Q+ DL+QA+G T + YREEDLRY ++IIMTDADV Sbjct: 491 QAILPLRGKILNVASATRDKMAANAQLSDLIQAIGAGTGANYREEDLRYSRIIIMTDADV 550 Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606 DGAHIASLL+TFFY++M LI+ HL+L PPL+R+T G+K++YA DE H+ ++L++ + Sbjct: 551 DGAHIASLLITFFYRQMPKLIDNGHLYLAVPPLYRLTHGSKTLYARDEAHRDELLKK-EF 609 Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 H K+EI RFKGLGEM+ +QLKET M KRTLLRV + T S+ +LMG+K Sbjct: 610 HANAKVEIGRFKGLGEMMPNQLKETTMAPAKRTLLRVVL--ATEERDSTAKSVERLMGSK 667 Query: 667 ADERFKFIQERASFI 681 A+ RF+FI ERA F Sbjct: 668 AEARFEFITERAEFA 682 >gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745] gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745] Length = 633 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ + F+RG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + I+ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE H+++ Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V ++ + + LMG K + R KFI++ A ++ ++ Sbjct: 587 ENRTILQVSLDGAI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108] gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108] Length = 657 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 254/664 (38%), Positives = 379/664 (57%), Gaps = 24/664 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +NY AS+I++LEGLE VR RP MYIG E LHHL EV+DN++DE +AGY + Sbjct: 5 EKINGENNYSASNIQVLEGLEAVRKRPAMYIGDISENGLHHLVYEVVDNSIDEAMAGYCD 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGLH Sbjct: 65 HIEVTINEDNSITVQDNGRGIPVDWHEK-EQKSALEVVMTVLHAGGKFDKGSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPK 214 GVG+S VNALS + V R I+ Q++ G PL +++ GT+ TF PD Sbjct: 124 GVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEMGLCEPGLSGTKQTFWPDDS 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + L + AYL+ ++ + + E+ P E F+ G+K +++ Sbjct: 184 IFTV-SEYKHTTLQARLRELAYLNKGIRITLTDLRVKDEEG-KPLTEYFHSEEGVKEFVR 241 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N + + ++ TEK G +E AI + + SY N I T EGGTHE G Sbjct: 242 YLNSNNTPLFDDVIYLNTEKSGVP---IECAIMYNTGYRENLHSYVNNINTREGGTHEGG 298 Query: 334 LRVALTRGIKKYAELT----QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 R ALTR +KKYA+ K + I +D + ++SV + EP+F GQTKTKL + Sbjct: 299 FRAALTRVLKKYADDNCSKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGN 358 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + V A+ + +YL ++P EA +++ V+ + R+ RK RE ++ + + Sbjct: 359 NEVSGAVNQAVGEALSNYLEEHPKEAKVIVDKVLLAATARVAARKARESVQRKSPMSGGG 418 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 +PGKLADCS ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGKILNV A K Sbjct: 419 MPGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAF 478 Query: 509 NNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 + ++ +++QALG R + + LRY+KVIIMTDADVDG+HI +L++T F++ Sbjct: 479 ESDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRY 538 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +I+ +L++ +PPL+ ++G Y ++ +QK ++ + + I R+KGLGE Sbjct: 539 FPQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDAYGGGSENAIHTQRYKGLGE 598 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET M+ R L +V + + + + LMG R FI+ A++ Sbjct: 599 MNPDQLWETTMNPENRMLKQVHLE----NAAEADYVFSMLMGEDVGPRRDFIESNATYA- 653 Query: 683 DVGT 686 ++ Sbjct: 654 NIDA 657 >gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A] gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289] gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A] gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289] Length = 657 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 262/668 (39%), Positives = 381/668 (57%), Gaps = 28/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 KNIEVTINEDNSVTVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + GTR F PD Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGETEK-TGTRQQFWPDAG 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + AYL+ ++ S + E E F+ GLK +++ Sbjct: 180 IFTTTV-FQWDIVARRMRELAYLNAGIRITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ KTEK+G +E A+ + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQGIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 FRAALTRTLKAYADSDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + YL ++P EA + VI + R+ RK RE RK + Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618 + M +IEQ HL++ +PPL++ T S Y + ++ +Q L+++ + I R+K Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2] gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2] Length = 649 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 250/653 (38%), Positives = 381/653 (58%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A I+V Sbjct: 12 AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFATAIQVI 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V ++ ++ Q++ RG + L+ + ++ GT + F PDP+IF + Sbjct: 131 VVNALSTTLDVKVFKEGKVYYQEYHRGAVVEDLKVIGET-DRHGTTVHFVPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L + A+L+ +K +E P +E+++ GG+K+Y++ ++ Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEH-----PVLKEYHYDGGIKSYVEHLNASK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++I E + E++G TVE ++ + + S+ N I T EGGTHESG + ALT Sbjct: 245 TVIFPEPIYLEGEQQGI---TVEVSLQYTDSYHNNLLSFANNIHTYEGGTHESGFKTALT 301 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA ++ + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ R ++ RE+ RK A+ LPGKLADC Sbjct: 362 RLFSEHFTKFLMENPAVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y E+ + +E K + R+KGLGEM QL ET Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPSVQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +LRV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1] gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1] Length = 643 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 380/657 (57%), Gaps = 21/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+ IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YADQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ + ++ GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVYRNETIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + ++ L + + A+L+ ++ E+ ++ +++ GG+K+Y Sbjct: 181 GDIFTETTVYNYETLQQRIRELAFLNKGIQITLR-----DEREEEVREDSYHYEGGIKSY 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 236 VELLNENKEPIHQEPIYIHQTKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 293 DGFKRALTRVLNSYGTQSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L +NP ++E I S R+ +K RE RK+A+ Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSS 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 413 LPGKLADCSSKNPDESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y ++ K+ E + K ISR+KGLGEM A QL Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKAEL--NPTPKWSISRYKGLGEMNADQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R++L+V + + D + LMG + R +FI++ A + ++ Sbjct: 591 WETTMNPEHRSMLQVRLEDAI----DADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642 >gi|310777811|ref|YP_003966144.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926] gi|309747134|gb|ADO81796.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926] Length = 634 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 266/648 (41%), Positives = 379/648 (58%), Gaps = 20/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A +I +LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY N IE+ + Sbjct: 2 SNYQAENITVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSVDESLAGYCNKIEIKV 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV HPK KS LEI+LT LHAGGKF+NS Y++SGGLHGVG+SV Sbjct: 62 LKDNIIEVSDNGRGIPVGIHPKH-GKSALEIVLTVLHAGGKFENSNYKVSGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ V V R I +Q+++RG+P ++ K N+ GT + F+ D +IF Sbjct: 121 VNALSEWTEVFVKRDGKIHNQRYNRGVPEFDVKVVGKT-NETGTTVRFKADSEIFETL-E 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + AYL+ ++ E+ ++E F GG+ +++ E ++ Sbjct: 179 YDFDVLKSRLKEMAYLNKGLEIVLID-----ERKEEIKEEILKFDGGIVDFIKEVEEGQA 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E E + VE AI + E+ I S+ N I T EGGTH SG R+ALTR Sbjct: 234 TLIPEPIYMAGESEDII---VEIAILYTEKQRETIYSFVNNINTHEGGTHVSGFRMALTR 290 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I + A+ +R + D+ I+S+ + EP+F GQTKTKL + + V + Sbjct: 291 IINEMAKSLGLLKERDGNFQGQDIREGVTAIISIKVPEPQFEGQTKTKLGNSEVTAVVSS 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + ++ +P +A ++E ++ + R +K RE V RK+A+ LPGKLADCS Sbjct: 351 IMGQFLKMHMEDHPSDARNIIERILMSRKAREAAKKARELVMRKSALEVGSLPGKLADCS 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +G K N ++ +V Sbjct: 411 SKKPEESEVFIVEGDSAGGSAKQGRDRHTQAILPLRGKIINVEKSGLHKALENNEVRSMV 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G E LRY K+IIMTDADVDGAHI +L+LTFFY+ M DLI ++++ P Sbjct: 471 TAFGANIGDDLELEKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQP 530 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLF++T G YA+ ++ ++I K + R+KGLGEM QL ET M+ + Sbjct: 531 PLFKVTAGRTIQYAYSDKQLKEITTVMDADNKR-YTLQRYKGLGEMNPDQLWETTMNHDT 589 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I+ ++ +KLMG K + R FI+E + F+ ++ Sbjct: 590 RTLLQVTIDD----AREADILFDKLMGDKVEPRRNFIEEHSHFVKNLD 633 >gi|217967929|ref|YP_002353435.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724] gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724] Length = 635 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 272/650 (41%), Positives = 385/650 (59%), Gaps = 22/650 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + D Y A SI+ILEG E VR RPGMYIG T + LHHL E++DN++DEV+AGY N I Sbjct: 4 TKKDKYTADSIQILEGTEAVRRRPGMYIGDTGIRGLHHLIFELVDNSIDEVMAGYCNYIL 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRGIPV+ HP+ K LE++LTTLHAGGKF NS Y+ISGGLHGVG Sbjct: 64 VELKKDGSVVVADNGRGIPVDIHPQA-KKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L V V R IF Q + +G P+ PL + + ++ GT+I F PD +IF Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQGYEKGKPVMPLTVRGET-DETGTKIRFYPDSEIFET 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + + A+L+ V ++ + F + GGL +++ + Sbjct: 182 -TKFDYDIVANRLRELAFLNPNVTIELRDER-------TGKSNVFKYEGGLLEFIEYLSK 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + E+ +++ + + I SY N I T EGGTH +G R AL Sbjct: 234 GKEILHEPIYMRREEENLIVEIVMQYNSGY---DELILSYANNIHTIEGGTHVTGFRTAL 290 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 TR + +A K S+ DD+ I+SV + +P+F GQTKTKL + + ++ VE Sbjct: 291 TRVVNNFARNWGLWKENESLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + + Y +NP ++ +IE R RK RE+ R+ + + LPGKLADC Sbjct: 351 KVVEEELTEYFSENPEVGKLIISKIIEAYRARQAARKARELVRRKSLLESSLLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS-EKIRNNQQIMD 515 S+ ELFIVEG+SAGGSAKQAR+R QA+LPLRGKILNV A KI ++++I Sbjct: 411 SERDPEKCELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKA 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +LG + LRY K+IIMTDADVDGAHI +LLLTFFY+ LIE ++++ Sbjct: 471 IIASLGTGIGQDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + +G + YA+ EE K++IL E+ + I R+KGLGEM QL+ET MD Sbjct: 531 QPPLYLLKKGKEERYAYSEEEKEEILREWG--YPDNVYIQRYKGLGEMDPEQLRETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+V I L + + + LMG +ER FI+++A F+ ++ Sbjct: 589 QKRILLQVTIEDAL----EAERLFSILMGNNVEERRSFIEQKAKFVRNLD 634 >gi|88803546|ref|ZP_01119071.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P] gi|88780558|gb|EAR11738.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P] Length = 646 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 253/657 (38%), Positives = 385/657 (58%), Gaps = 23/657 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + +YDASSI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY Sbjct: 1 MSEEKKTYSYDASSIQALEGMEHVRMRPSMYIGDVGPRGLHHLVYEVVDNSIDEAMGGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V+++ + +T DNGRGIPV H K S L++++T + AGGKFD +Y++SGGL Sbjct: 61 DTIDVTINEDNSVTTRDNGRGIPVGIHEK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALSD L T+ ++ ++ Q++S+G L P++ + + GT +TF PD Sbjct: 120 HGVGVSCVNALSDLLTATIHKEGKVWQQEYSKGKALYPVKTIGE-SDFTGTIVTFLPDKS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F+ L + +YL+ + + + ++ E FY GL +++ Sbjct: 179 IFKQTTEFNYDTLATRMRELSYLNKGITITLTDKRSTDDEG-NFISEVFYSDEGLPEFIK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 R ++S+I + + EK G VE A+ + + SY N I T EGGTH SG Sbjct: 238 YLDSTREQLTSKIISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSG 294 Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + + + DD I+SV + EP+F GQTKTKL + + Sbjct: 295 FRRGLTGTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V ++ + +YL +NP +A +++ VI + R RK RE+ RKT + LP Sbjct: 355 VSAAVSQSVSEMLTNYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N Sbjct: 415 GKLSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFEN 474 Query: 511 QQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ L Y KV+IM DADVDG+HIA+L+LTFF++ M + Sbjct: 475 EEIKNMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMRE 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 ++EQ ++++ +PPL+ + +G K YA D++ + I ++ G + I R+KGLGEM A Sbjct: 535 MVEQGYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMG----GTVNIQRYKGLGEMNA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ RTL +V I+ S + + LMG + R +FI++ A + Sbjct: 591 DQLWDTTMNPEFRTLRQVVID----SPTEADRVFSMLMGDEVPPRREFIEKNAKYAK 643 >gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008] gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008] Length = 633 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 2 PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 62 SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ + F+RG S L + K GT + F+PD +IF Sbjct: 120 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKASG-TGTTVIFKPDAEIFETT 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 179 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLISFITFLNEN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + I+ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 233 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 289 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 290 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 350 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 410 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 470 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I R+KGLGEM QL ET M+ Sbjct: 530 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 587 ENRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 632 >gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44] gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44] Length = 645 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 368/650 (56%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 14 PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 73 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++LT LHAGGKF Y++SGGLHGVGI Sbjct: 74 SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVGI 131 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ + F+RG S L + K GT + F+PD +IF Sbjct: 132 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 190 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 191 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 244 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + I+ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 245 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 301 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 302 TRTLNDYGRKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 361 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 362 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 421 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 422 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 481 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 482 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 541 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I R+KGLGEM QL ET M+ Sbjct: 542 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 598 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 599 DNRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 644 >gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] Length = 637 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 384/653 (58%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 2 SEQKKQVYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGFCKN 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV + + +TV D+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IEVFIHKDNSITVTDDGRGMPVGMHPKM-KKPTVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ V V R+ I+ Q F RG + LE GT+I F+PD +IF Sbjct: 121 VGASVVNALSELCEVEVKREGHIWKQAFERGKVKTGLEIVGDSEGH-GTKIHFKPDAEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + +D L + + A+L+ ++ S ++ I + E F++ GG+K+++ Sbjct: 180 EEV-DYDYDTLAQRLRELAFLNRNIRINLSDER-------IDKLEVFHYEGGIKSFVSYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ +I+ E + K +VE +I + + I S+ N I T EGGTH +G + Sbjct: 232 NRNKQVINKEPIYVEGNK---QDCSVEISIQYNDGYTENIFSFANNIDTVEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR YA+ + ++ +D+ ++SV + +P+F GQTKTKL + + + Sbjct: 289 SALTRAFNDYAKKFGILKENDKNLSGEDIREGLTAVISVKLIDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + + +L +NP A +L+ + S R RK RE RK+ + LPGK Sbjct: 349 GIVDGIVGEGVSSFLQENPQVAKSILDKSLMASRAREAARKARELTRRKSILENTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI ++ Sbjct: 409 LADCSSKDPKECEIYLVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGYEE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G + E +RY+++IIMTDADVDGAHI +LLLTFFY+ M +L++Q H+ Sbjct: 469 IRAMITAFGGGIGKDFDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ +G K YA+ ++ +K+LE+ I R+KGLGEM A+QL +T Sbjct: 529 YIAQPPLYKVAKGKKEHYAYSDKELEKLLEDVGGKDNNT-NIQRYKGLGEMDATQLWDTT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ ++R LL+V + + + LMG K + R +FIQE A + ++ Sbjct: 588 MNPDERVLLQVTVEDAM----AADEIFTILMGDKVEPRREFIQENAKKVINLD 636 >gi|229824639|ref|ZP_04450708.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271] gi|229786010|gb|EEP22124.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271] Length = 640 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 376/651 (57%), Gaps = 21/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YDA I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY + IE Sbjct: 6 QSPQQYDAGQIQVLEGLEAVRKRPGMYIGSTSIVGLHHLVWEIVDNSIDEALAGYCDHIE 65 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ N +TV DNGRGIPV+ P+ + +E + T LHAGGKF Y++SGGLHGVG Sbjct: 66 VTIEANNSITVQDNGRGIPVDIQPQ-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS EL V V+R ++ Q++ RG LE + GT++ F PDP IF + Sbjct: 125 ASVVNALSTELTVQVSRDGKLYQQRYHRGAVEGDLEVIGQATE-TGTKVNFLPDPAIFTE 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ RL K + A+L+ ++ + E EK+ F++ GG+K+Y+Q + Sbjct: 184 TTVFEYERLKKRIRELAFLNKGLRITIEDKRLDQE-----EKDSFHYEGGIKSYVQHLNQ 238 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337 +++ I E + E VE ++ + + I S+ N I T EGG+HE+G + Sbjct: 239 HKTPIFEEPIYIEGEVDDIQ---VEISMQYTDSYHTTILSFANNIHTHEGGSHEAGFKTG 295 Query: 338 LTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR I YA + ++ +D+ +LS+ +P+F GQTKTKL + + + Sbjct: 296 LTRVINDYARKMNLIKENDENLTGEDVREGLTLVLSIKHPDPQFEGQTKTKLGNSEVRAI 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 + + FD YL++NP A +++ ++ +R + RK+ + LPGKLA Sbjct: 356 TDRLFSNGFDVYLMENPKVARIIVDKGILAAKARMAAKRAREMTRRKSVMEISNLPGKLA 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS A ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI NN++I Sbjct: 416 DCSSREAELCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKASMDKILNNEEIR 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L A+G ++ RY K+I+MTDADVDGAHI +LLLT Y+ M L++ ++++ Sbjct: 476 SLFTAMGTGFGGEFDVAKARYHKLILMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYVYI 535 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ QG +++Y + ++ EE + + I R+KGLGEM QL ET M+ Sbjct: 536 AKPPLYQVKQGKRAIYLDTDAELKEWQEE---NPNARYTIQRYKGLGEMNEDQLWETTMN 592 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R +L+V + + + + + LMG + R FI++ A +++++ Sbjct: 593 PENRRMLQVTVEDAI----EAEAVLEMLMGDDVEPRRAFIEDNAVYVENLD 639 >gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120] gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120] Length = 645 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVE 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G + V D+GRGIP++ H + KS LE ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INADGSVAVTDDGRGIPIDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + +Q++ RG+P++ L + GT +TF+PD +IF + Sbjct: 121 VVNALSEVVEVTVWRDKKVHTQRYERGVPVTELITNPYKEARTGTSVTFKPDTQIFTNSI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK ++ ++ K P+ E + + GG+K Y+ ++ Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEIIYVQGERNNV-QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ + + ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TLNTIARKRNKIKEHEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +L+ I+ + R RE V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY ++IIMTDADVDGAHI +L+LTFFY+ LIEQ +++ Sbjct: 480 TALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + E Q+ + +F + I RFKGLGEM+ QL T M+ Sbjct: 540 PPLYKVERGRNYEYCYSERELQQAIAKFPANAN--YTIQRFKGLGEMMPEQLWTTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 RTL RVEI + LMG + R +FI+ S + D+ Sbjct: 598 TRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644 >gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202] gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202] Length = 655 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 259/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIILRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209 GGLHGVGISVVNALS+ ++VTV R + F+Q+F +G+ +K+ +K+GT I F Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKKGTTICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF F+ A L + AYL+G VK + ++ E E + + GG+ Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y++ + I EI ++++ + + I + N I T +GGT Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQRENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ I ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ R+ RE V RK+ + Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E + +E F ++ I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENAN--YNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ +S +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649 >gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQEKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM + + ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTLIWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|26553455|ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2] gi|26453461|dbj|BAC43793.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2] Length = 649 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 262/664 (39%), Positives = 387/664 (58%), Gaps = 29/664 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + Y AS+I+ILEGLE VR RPGMYIG TD K LHH+ E++DN++DE + G A Sbjct: 1 MNKETKKNTYSASNIKILEGLEAVRKRPGMYIGSTDIKGLHHMVWEIVDNSIDEAMTGNA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I ++L G V D+GRGIPVE H K KST+E +LT LHAGGKFDN +Y++SGGL Sbjct: 61 SEITITLTKEGSAKVQDDGRGIPVEKHAK-TKKSTVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEK-KEKVRNKRGTRITFRPD 212 HGVG SVVNALS L V V ++ +F G P++ L+ EK K GT + F PD Sbjct: 120 HGVGASVVNALSSWLKVWVYKEYKEHYIEFKDGGKPVADLKVTNEKASIKNGTIVEFYPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +I FDA + + AYL+ +K + ++ +KE F F GG+K + Sbjct: 180 FEIMERA-EFDADTIKSRLKQLAYLNKGIKINFIDER-------TDDKETFLFAGGIKQW 231 Query: 273 LQTKLENRSLISSEIFTGKTEK-------KGTHRGTVEWAIAWCEENPE-ITSYCNTILT 324 ++ + I I + E+ K + VE A + + ++CN I T Sbjct: 232 VEELNNEKEPIVPTIVYDEREESVKAANNKDKYNIRVEVAFQYNKTYNNSTFTFCNNINT 291 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382 EGG+HE G + AL + I K+A + + I +D + I+S+ P++ GQ Sbjct: 292 TEGGSHEEGFKFALQKIINKFAVEKKLLKETDEKISKEDAIEGLTAIVSIKHPNPQYEGQ 351 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KL + + + V N + + F+ YL++NP +A +++ + E R + + RE R+ Sbjct: 352 TKRKLGNSEVRPFVSNVVSEIFEKYLLENPEDANVIIKKCLLAMEARKKSFEAREATRRK 411 Query: 443 A-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + LPGKLADCS +EL+IVEGDSAGGSAK R+R QA+LPL+GKI+NV Sbjct: 412 SPFESNSLPGKLADCSTKDKEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEK 471 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A S+KI +N++I++L+ A+G +++ + LRY K+I+MTDADVDG+HI LLLTF ++ Sbjct: 472 AKSDKIFSNEEIINLITAIGAGVGPEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 MY L+E ++++ PPLF+ + G S YA+DE+ ++ +E + K K +I R+KGLG Sbjct: 532 YMYPLLENGNVYIACPPLFKFSVGKSSKYAYDEKTLEEFKKE---NSKVKYQIQRYKGLG 588 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM QL ET MD R LL+V I LN + LMG + R +FI++ A ++ Sbjct: 589 EMNPDQLWETTMDPKNRLLLKVTIEDALN----ADKVFSLLMGDEVAPRREFIEKNAKYV 644 Query: 682 DDVG 685 ++ Sbjct: 645 KNLD 648 >gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10] gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10] Length = 636 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 266/647 (41%), Positives = 380/647 (58%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD + I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG + IE+ + Sbjct: 7 TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIPV + K KSTLE+++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 67 EDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R I+ Q++ RG+P ++ + GT +TF PDP+IF + + Sbjct: 126 NALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDSDDH-GTTVTFLPDPEIFTETTVY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D LL + A+L+ + + ++ + F + GG+ Y++ E + Sbjct: 185 DYTTLLTRIRELAFLNKGIALTLTDER-------TGASDYFKYEGGIIEYVKFLNEKKEA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + VE ++ + + I S+ N I T EGGTHESG + ALTR Sbjct: 238 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 342 IKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA T + ++ DD+ I+SV + EP+F GQTKTKL + + + VE+ Sbjct: 295 INDYARKTGLIKDNTSNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + +L +NP + ++LE ++ S R RK R RK+A+ LPGKLADCS Sbjct: 355 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 474 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E ++++ PP Sbjct: 475 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 534 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF+I + YA E + +I++EF ++ KI + R+KGLGEM A QL ET MD R Sbjct: 535 LFKIERNKVIRYAGSERERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V I + + LMG + R FIQE A + ++ Sbjct: 593 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKSVRNLD 635 >gi|168335262|ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. 'N.t. morphotype B'] Length = 635 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 255/650 (39%), Positives = 375/650 (57%), Gaps = 21/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++ YD S I+ILEGLE VR RP MYIG T K LHHL E++DNA+DE +AG+ + + V Sbjct: 2 SNNIYDESQIQILEGLEAVRKRPDMYIGSTSAKGLHHLVYEIVDNAVDEALAGFCDKVTV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V+DNGRGIPV H K S E++ T LHAGGKF Y++SGGLHGVG Sbjct: 62 TIHKDNSISVLDNGRGIPVGIH-KDKGISAAEVVFTILHAGGKFGGGGYKVSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L V + I+ QKF +G + L ++ GT + F PD IF + Sbjct: 121 SVVNALSSWLISRVYQHGKIYEQKFKKGHVVESLHPIG-TTDQTGTFVHFLPDETIFEET 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D A L K Q A+L+ +K ++ ++ F++ GG+ ++ +N Sbjct: 180 V-YDFAILKKRFQETAFLTKGLKIKLIDER-----VEPKLEKIFHYEGGVSEFVLFLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF + EK ++E A + I S+ N I T EGGTH SG + AL Sbjct: 234 KTPIYENIFYCEGEKDDV---SIEVAFCHNDGYNENIFSFANNINTIEGGTHLSGFKNAL 290 Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ + YA+ + + +D+ G++S+ I EP+F GQTKTKLV+ + + V Sbjct: 291 TKTVNDYAKKMKILKDNDKSLSGEDIREGITGVISIKISEPKFEGQTKTKLVNTNVRTIV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 +N + + F +L QNP A +++ S R RK R+ RK + LPGKLAD Sbjct: 351 DNIVSEKFMIFLEQNPTIAKIIIQKATMASHARDAARKARDLTRRKNVLENSTLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ E++IVEGDSAGGSAK AR+R NQA+LPLRGKILNV A +K+ +++I + Sbjct: 411 CSERDPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIRN 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G E LRY K+I+MTDADVDGAHI +LLLTFFY+ +LI +++ Sbjct: 471 MITAFGAGINEDLNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRFYRELITGGFIYIA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + + K YA+++ + IL E ++G ++ R+KGLGEM QL +T M+ Sbjct: 531 QPPLYLVEKNKKKHYAYNDRELELILTEIGRNGITRM--QRYKGLGEMNPDQLWDTTMNP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTL++V I + + + LMG K + R +FI+E A + ++ Sbjct: 589 ATRTLVKVNIEDAV----EADEIFTALMGDKVEPRREFIKEYAKLVKNLD 634 >gi|312143598|ref|YP_003995044.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311904249|gb|ADQ14690.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 636 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 261/647 (40%), Positives = 389/647 (60%), Gaps = 24/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A I++L+GLE VR RPGMYIG T K LHHL EV+DN++DE +AGY + I+V++ Sbjct: 9 DYNADQIQVLKGLEAVRKRPGMYIGSTGIKGLHHLVWEVVDNSIDEFLAGYGDEIKVTIH 68 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +TV D GRGIP + H K ++++LTTLHAGGKF+N++Y++SGGLHGVG+SVV Sbjct: 69 ENNEITVEDYGRGIPADIH-KDSGLPAVQVVLTTLHAGGKFNNNSYKVSGGLHGVGVSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++L +T + + Q F +G+P S LEK K + GT I F+ D IF + + Sbjct: 128 NALSEKLVLTTHWEGNKYRQVFKKGVPTSKLEKLGKTKR-SGTVIRFKADSDIFAAR-DY 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L Q AYL+ + ++ EK + F + GG+K +++ ++R++ Sbjct: 186 KFENLAHRLQESAYLNKDLTLILIDERGEGEKKKV-----FQYDGGIKAFVEFLNKDRNV 240 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I+ +I +++ + VE AI + + I SY N I T +GG H +G + ALTR Sbjct: 241 INEDIIYFESKPED---YEVEMAIQYNDGYNERIYSYANNINTIDGGYHLTGFKTALTRA 297 Query: 342 IKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I +A+ + S+ D+ I++V + EP+F GQTKTKL + + + VE+ Sbjct: 298 INNFAKNNNRLPAKISSLRGKDVREGITAIINVKLPEPQFEGQTKTKLGNSELRSIVESE 357 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + Y NP A K+++ ++ R +K RE RK+A+ LPGKLADCS Sbjct: 358 VYEYLSLYFDTNPDLANKVIDKAVQAVRARKASKKARELTKRKSALNSNALPGKLADCSS 417 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +ELFIVEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI NN +I ++ Sbjct: 418 KKAEKSELFIVEGDSAGGSAKQGRDRNFQAILPLKGKILNVERARLDKILNNTEIASIIT 477 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + ++LRY K+IIMTDADVDGAHIA+L+LT FY+ M +LIE+ +++L PP Sbjct: 478 ALGAGIGEDFNIKNLRYHKIIIMTDADVDGAHIATLILTLFYRYMPELIEEGYIYLAKPP 537 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++++G + Y + ++ + ++ + + R+KGLGEM QL +T MD R Sbjct: 538 LYKVSRGKSTKYLYSDQELAEYKKKHEN-----FSLQRYKGLGEMNPRQLWDTTMDPENR 592 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRVEI+ D + D +LMG+ A R +FI A + + Sbjct: 593 VLLRVEIDDDF----EADDIFTRLMGSNASLRKEFIFNNAELVQTID 635 >gi|220927465|ref|YP_002504374.1| DNA gyrase subunit beta [Clostridium cellulolyticum H10] gi|219997793|gb|ACL74394.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10] Length = 642 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 251/656 (38%), Positives = 385/656 (58%), Gaps = 20/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + + YD S I++LEGLE VR RPGMYIG T + LHHL E++ N++DE +AG Sbjct: 1 MSDINNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSIDEALAGRC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++I+V + + +TV DNG GIPV HPK TLE++ T LHAGGKF + Y +SGGL Sbjct: 61 DIIKVIVHKDNSVTVTDNGSGIPVGIHPKM-GIPTLEVVHTILHAGGKFGSGAYSVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ + V V R+ I+ QK+SRG PL+ ++ ++ GT TF+PDP+ Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPLTSVDIVGDT-DETGTITTFKPDPE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D ++ + A+L+ + ++ ++ ++ GG+ ++++ Sbjct: 179 IFEEIV-YDFDAMISRYREMAFLNKGINIKLIDER-----PEESVEKNLHYEGGIISFVE 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + E+ + + VE A+ + + + +Y N I T EGGTH +G Sbjct: 233 YLNKSKEPLHDEVIYLEGSRDANI---VEVAMQYNDSYNESVFTYANNIATTEGGTHLTG 289 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R A+T+ + YA + ++ +D+ +LSV + EP+F GQTKTKL + + Sbjct: 290 FRAAITKVLNDYARKFNILKENDKNLSGEDVREGLTAVLSVKLPEPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + D +L ++P A +L+ I + R RK RE RK+A+ LP Sbjct: 350 IRTLVENVVSDKLFIFLEEHPAVAKIILDKSITAARAREAARKARELTRRKSAMDSSTLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ TE+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV + +K+ +N Sbjct: 410 GKLADCSEKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG ++ LRY+K+IIM DADVDG+HI LLLTFF++ M L+EQ Sbjct: 470 EKLSPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPLF++ +G + YA+D+ KI +E + + I RFKGLGEM QL Sbjct: 530 HVYIAMPPLFKVYKGKEEYYAYDDIELDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ RT+++V DL + K MG K + R ++IQ A + ++ Sbjct: 590 ETTMNPETRTIIKV----DLEDAISADEVFCKFMGDKVEPRREYIQMHARDVSNLD 641 >gi|260575737|ref|ZP_05843734.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2] gi|259022135|gb|EEW25434.1| DNA topoisomerase IV, B subunit [Rhodobacter sp. SW2] Length = 653 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 342/653 (52%), Positives = 450/653 (68%), Gaps = 10/653 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + AS+ Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+A+ Sbjct: 7 SGDHASNAYMASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNAMDEAVAGHAS 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV L + LTV DNGRGIPV+ HPKFP KS LE+I TLH+GGKF YE SGGLH Sbjct: 67 RIEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVIFCTLHSGGKFSGKAYETSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALSD + V VAR +++Q FSRGIP PL+K N+RGT +TF PD I Sbjct: 127 GVGASVVNALSDVMRVEVARNKELYAQSFSRGIPQGPLQKIGPAPNRRGTSVTFHPDADI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG ARLLKM +SKAYL V+ W K P++ F+FPGGL YL Sbjct: 187 FGSLH-LKPARLLKMARSKAYLFSGVEIRW---KSAVSDGETPQEAVFHFPGGLSDYLGE 242 Query: 276 KLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332 +L + + F GK K G+VEWAI W + + SYCNT+ T EGGTHE+ Sbjct: 243 QLAKTTTYADRPFAGKVSFPDKFNVPGSVEWAINWTPARDGFLQSYCNTVPTPEGGTHET 302 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 G A+ +GI+ Y +L +N++A I DD++ ++SVFIREP+F GQTK +L + +A Sbjct: 303 GFWSAILKGIRAYGDLVKNRKAELISRDDMLTGGCALISVFIREPQFVGQTKDRLSTEEA 362 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 R VE A+RD FD++L + A +L++++ R+EERL+RR+++E RKTA +KLRLPGK Sbjct: 363 ARYVELAVRDHFDNWLASDTKSAGAILDFLVLRAEERLKRRQEKETARKTATKKLRLPGK 422 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DCS GTELFIVEGDSAGGSAK AR R QA++PL+GKILNV A S K+ N + Sbjct: 423 LTDCSSKTREGTELFIVEGDSAGGSAKGARERETQAIMPLKGKILNVLGAASSKLNENSE 482 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I D+ +ALG + ++++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL Sbjct: 483 IRDICEALGVQMGTRFKVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHL 542 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL+R+TQG K +Y D+ K++ L + GKGKI++ RFKGLGEM A LK+T Sbjct: 543 YLACPPLYRLTQGAKRMYVSDDAEKEEWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTT 601 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 MNPETRKLIRVSIDEDE--PGETSDLVERLMGKKPELRFQYIQENARFVEELD 652 >gi|42525521|ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405] gi|4033400|sp|O87545|GYRB_TREDE RecName: Full=DNA gyrase subunit B gi|3676691|gb|AAC62070.1| DNA gyrase subunit B [Treponema denticola] gi|41815532|gb|AAS10500.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405] gi|325475358|gb|EGC78543.1| DNA gyrase subunit B [Treponema denticola F0402] Length = 638 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 365/653 (55%), Gaps = 24/653 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A++I +L+GLE VR RPGMYIG T LHHL EV+DN +DE +AG+ + I V Sbjct: 2 TKSNYSANNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ N + V DNGRGIPV+ HP S LE++LT LHAGGKFD +Y++SGGLHGVG+ Sbjct: 62 VLEPNDIVRVEDNGRGIPVDIHP-TEKISALELVLTRLHAGGKFDKGSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS + V + KF +G L P++K + GT I + DP IF + Sbjct: 121 SVVNALSVWMEAKVYKDGFEHYAKFEKGSILEPVKKIGETEK-SGTVIRWAVDPSIFTET 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + A+L+ ++ ++ P++ F F GG+ ++ E+ Sbjct: 180 TVYNFEVLATRLRELAFLNSKISITMRDER-----LSTPKEVTFAFEGGISQFVSYLNES 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + + EK E AI + + + S+ N I T EGGTH G + AL Sbjct: 235 KQVFPKSPVFIEGEKNDIL---CEVAIQYNDGYNENLLSFVNDINTREGGTHLEGFKTAL 291 Query: 339 TRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 TR + + + + + + +D+ I+SV + EP+F GQTKTKL + D + Sbjct: 292 TRVMNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVR 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V++ + + + QNP E K+L + V E + RR + RK+ + LPGK Sbjct: 352 GIVDSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E++IVEGDSAGGSAK+ R+ QA+LPL GK+LNV +K+ NN++ Sbjct: 412 LADCSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEK 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ LG + E LRY KVIIM DADVDG+HI +LLLTFF++ M +IE+ H+ Sbjct: 472 LQPIIATLGTGIGKDFNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL++I+ K Y ++++ + +L++ + + R+KGLGEM +QL ET Sbjct: 532 YLAMPPLYKISHNKKEWYVYNDDERDSVLDQIGRGNNAA--VQRYKGLGEMDGTQLWETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +R ++RV + + + + LMG + + R KFI+E A + ++ Sbjct: 590 MDPARRKMMRVTLPDAV----EADRIFSTLMGEEVEPRRKFIEENAVYA-NLD 637 >gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264] gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264] Length = 660 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 261/670 (38%), Positives = 376/670 (56%), Gaps = 37/670 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A +I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG + I V Sbjct: 2 ANNYGAENIKVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSVDEALAGVCDNIIVK 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + V DNGRGIP H KSTLE+++T LHAGGKFDN Y++SGGLHGVG+S Sbjct: 62 ILKDNVIEVSDNGRGIPFATHE--TGKSTLEVVMTVLHAGGKFDNDNYKVSGGLHGVGVS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS+ L VTV R I Q + RG P+S +EK + GT F+ DP+IF Sbjct: 120 VVNALSEWLEVTVTRDGQIVRQTYKRGEPVSDVEKIGEASPEAHGTTTKFKADPEIFETT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ + L + AYL+ + +++ + ++E+F F GG+ +L + Sbjct: 180 V-YEFSVLESRLKELAYLNKGLTITLIDERDQEKI----KEEKFLFEGGIIDFLNEIADE 234 Query: 280 RSLISSEIFTGKTEKKGTHRG--------------------TVEWAIAW-CEENPEITSY 318 + I+ T + + VE A+++ + + S+ Sbjct: 235 EKITDEVIYMSDTYEVEAAKEVEIVDDNGNTVKKMRAAKFVEVEIAMSYTISQRENVYSF 294 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I T EGGTH SG R ALTR I A+ + + D+ V ++SV I E Sbjct: 295 VNNINTHEGGTHVSGFRTALTRTINDIAKQMNIVKDKDGTFQGTDVREGLVCVISVKIPE 354 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F GQTKTKL + + V N + + YL +P EA K++E + R +K R Sbjct: 355 PQFEGQTKTKLGNSEVTGIVSNIVGNNLKFYLEDHPKEAEKIIEKMTMSKRAREAAKKAR 414 Query: 437 EVN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ RK + LPGKLADCS +E+FIVEG+SAGGSAKQ R+R QA+LPLRGK Sbjct: 415 ELVLRKNTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV +G K+ N +I ++ A G E LRY K+IIMTDADVDGAHI +L+ Sbjct: 475 ILNVEKSGMHKLLENAEIRAMITAFGAGFGDDMDLEKLRYHKIIIMTDADVDGAHIRTLM 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 LTFFY+++ +LI + ++++ PPL+++ G YA+ +E +KI ++ + I Sbjct: 535 LTFFYRQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRR-YTIQ 593 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET +D RTLL+V + N LMG K + R +FI+ Sbjct: 594 RYKGLGEMNPEQLWETTLDPEVRTLLKVTMED----ASYADKMFNILMGDKVEPRRQFIE 649 Query: 676 ERASFIDDVG 685 E A+++ ++ Sbjct: 650 ENANYVRNLD 659 >gi|291543406|emb|CBL16515.1| DNA gyrase subunit B [Ruminococcus sp. 18P13] Length = 649 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 249/660 (37%), Positives = 374/660 (56%), Gaps = 19/660 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + + YD S I++LEGLE VR RPGMYIG T LHHL E++DN++DE +A Sbjct: 2 SETEQIKPGAQQYDESQIQVLEGLEAVRKRPGMYIGTTGSGGLHHLVYEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GY I+V + + V DNGRGIP HPK S ++ T LHAGGKF Y+++ Sbjct: 62 GYCTHIQVEILPGDIIRVTDNGRGIPTGIHPK-EGISAATVVYTVLHAGGKFGGGGYKVA 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS+ L +TV + + Q+F RG PL+ GT + F+P Sbjct: 121 GGLHGVGASVVNALSEWLELTVKDGSHVHFQRFERGNYAEPLKIIGDTTEH-GTSVMFKP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D +IF + FD LLK + +A+L+ + S ++ A P+ E+ + GG++ Sbjct: 180 DAEIFEETTVFDYEVLLKRMREQAFLNAGLTIELSDQRDPA----NPQGEKMCYEGGIRQ 235 Query: 272 YLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 +++ + R +S ++ K VE A+ + + I S+ N + T +GG Sbjct: 236 FIEHIHKTRGLESLSEQVIYFTGSKGDN---AVEIAMQYNDSYNELILSFANNVHTIDGG 292 Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G R ALT+ + +Y + K ++ +D+ I+SV + + +F QTK KL Sbjct: 293 MHELGFRNALTKTLNEYGKRFGLLKDDSKLMGEDVREGLTAIISVKLTDCQFESQTKVKL 352 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + + VE+ + + +YL +NP A + + + R +K RE RKTA+ Sbjct: 353 GNPEIKPFVESIVSEKLMNYLEENPAVARAIFDKSLAAQRAREAAKKARETARRKTAMES 412 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS+ TE++IVEGDSAGGSAK+ R+R QA+LPL GK+LNV A +K Sbjct: 413 ASLPGKLADCSERDIEMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDK 472 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + N+++M +V ALG + LRY KVIIM DADVDG+HI +LLLTFF++ M L Sbjct: 473 VYCNEKLMPVVTALGTSIGEDFDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPL 532 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLA 625 I ++++ PPLFR+ +G YA +E + K + +F K+E+ R+KGLGEM A Sbjct: 533 ITNGNIYIAQPPLFRVAKGKTFKYAFSDEERDKYIAQFNAESPNAKVEVQRYKGLGEMDA 592 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ + RT+++VE+ + ++ + LMG K R +FI++ A + ++ Sbjct: 593 HQLWDTTMNPDTRTMIKVEMADAVK----ADETFSILMGDKVAPRREFIEKNAKYAQNLD 648 >gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110] gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110] Length = 642 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 251/653 (38%), Positives = 375/653 (57%), Gaps = 19/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IE Sbjct: 2 TTKSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + ++ +G +TV D+GRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVG Sbjct: 62 IDINPDGSVTVTDDGRGIPTDVHP-STGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ + V V R + + +Q++ RG+P++ LE K + GT I+F PD IF Sbjct: 121 VSVVNALSEWVIVKVWRDDQVHTQRYERGVPITSLETKADKDHSTGTSISFLPDKTIFTV 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + L + AYL+ VK ++ +++ P E + + GG+K Y+ Sbjct: 181 GTEFDYSTLAGRLRELAYLNAGVKITFTDNRK-----EEPHIESYCYEGGIKEYVTYMCR 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +I EK GT + V + + + N I T +GGTH GL+ L Sbjct: 236 DKDPLHQDIIFVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294 Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + A + ++ +++ G++SV + EPEF GQTKTKL + + + V Sbjct: 295 TRTMNNVARKRNKLKDNDSNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++ + + YL NP A ++E ++ + R+ RE V RK+ + LPGKLAD Sbjct: 355 DSLVGEVLSEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+N+ +I N +I Sbjct: 415 CSTRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQS 474 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + + + LRY +++IMTDADVDGAHI +LLLTFFY+ L++Q ++++ Sbjct: 475 LITALGLGIKGEEFDSSQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ +G VY ++E Q+ + + I RFKGLGEM+ +QL +T M+ Sbjct: 535 ACPPLYKVERGRNHVYCYNERQLQEHINSLPANAN--YSIQRFKGLGEMMPTQLWDTTMN 592 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R + +VEI + LMG + R +FI+ +D D+ Sbjct: 593 PETRRMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLD 641 >gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5] gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5] Length = 634 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 266/647 (41%), Positives = 379/647 (58%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD + I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG + IE+ + Sbjct: 5 TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIPV + K KSTLE+++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 65 EDNSITVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R I+ Q++ RG+P ++ + GT +TF PDP+IF + + Sbjct: 124 NALSSKVVVQVKRDGNIYQQEYHRGVPQYDIKIIGDSDDH-GTTVTFLPDPEIFTETTVY 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D LL + A+L+ + + ++ + F + GG+ Y++ E + Sbjct: 183 DYTTLLTRIRELAFLNKGIALTLTDER-------TGASDYFKYEGGIIEYVKFLNEKKEA 235 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + VE ++ + + I S+ N I T EGGTHESG + ALTR Sbjct: 236 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 292 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA T + + DD+ I+SV + EP+F GQTKTKL + + + VE+ Sbjct: 293 INDYARKTGLIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 352 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + +L +NP + ++LE ++ S R RK R RK+A+ LPGKLADCS Sbjct: 353 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 412 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 413 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 472 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E ++++ PP Sbjct: 473 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 532 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF+I + YA E + +I++EF ++ KI + R+KGLGEM A QL ET MD R Sbjct: 533 LFKIERNKVIRYAGSERERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V I + + LMG + R FIQE A + ++ Sbjct: 591 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKSVRNLD 633 >gi|229496104|ref|ZP_04389826.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406] gi|229317000|gb|EEN82911.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406] Length = 653 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 245/664 (36%), Positives = 389/664 (58%), Gaps = 21/664 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + Y A SI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +A Sbjct: 2 SDENNKSTEQQEYSAGSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GY ++V++ + ++V DNGRGIPV+ HPK +S LE+++T LHAGGKFD +Y++S Sbjct: 62 GYCTDVKVTILEDNSISVEDNGRGIPVDIHPK-EGRSALEVVMTVLHAGGKFDKGSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+S VNALS L V R F Q+FS+G PL ++++ + ++ GT +TF P Sbjct: 121 GGLHGVGVSCVNALSTHLRADVYRDGKHFVQEFSKGKPLYSVKEEGE-SDRTGTTVTFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF + L + A+L+ ++ + +E E+ P E FY GLK Sbjct: 180 DNSIFTVSI-YQFKILAHRLRELAFLNAGLRLSLTDLRERDEEG-NPLTEVFYSEDGLKE 237 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 +++ +++ + ++ K +E A+ + ++ + SY N I T EGGTH Sbjct: 238 FVRFIDQSKVNLLDDVIHI---KNDKGEVPIEVAMTYNQDYQENVYSYVNDINTIEGGTH 294 Query: 331 ESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR +K+YA ++ K +++ DD ++S+ + EP+F GQTKTKL Sbjct: 295 LTGFRRALTRTLKQYATDSKMLEKVKVNVEGDDFREGLTAVISIKVAEPQFEGQTKTKLG 354 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447 + + VE+A+ + YL ++P +A +++ V+ ++ R R++ + + + Sbjct: 355 NSEVIGIVESAVSEALAIYLEEHPQQAKAIVDKVVLAAQARHAAANARKLVLRKSPLAAG 414 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL+DC+ E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A K+ Sbjct: 415 GLPGKLSDCTSKDPAKCEIFLVEGDSAGGTAKQGRDRMYQAILPLRGKILNVEKAMQHKV 474 Query: 508 RNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++Q+I ++ ALG ++ + LRY K+IIMTDADVDG+HIA+L+LTFF++ Sbjct: 475 LDSQEIRNIYTALGVTIGTEEDSKALNLSKLRYHKIIIMTDADVDGSHIATLILTFFFRN 534 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M LI+ +++L +PPL+ +G + Y E+ ++ ++++ + ++ + R+KGLGE Sbjct: 535 MRSLIDNGYVYLATPPLYLCRKGKEQAYCWTEQQRRAFIDKYADGNESRVHVQRYKGLGE 594 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M+ QL ET M+ + R L ++ I S + + LMG R +FI++ A++ Sbjct: 595 MMEEQLWETTMNPDNRILKQITIE----SAASADRTFSMLMGEDVPPRREFIEDNATYAR 650 Query: 683 DVGT 686 + Sbjct: 651 -IDA 653 >gi|171920695|ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178763|ref|ZP_02554678.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024457|ref|ZP_02570760.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518714|ref|ZP_02557214.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524147|ref|ZP_02557455.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867481|ref|ZP_03079485.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273562|ref|ZP_03206098.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554430|ref|YP_002284500.1| DNA gyrase subunit B [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550770|ref|ZP_03771719.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551162|ref|ZP_03772108.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903433|gb|EDT49722.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209375|gb|EDU06418.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018752|gb|EDU56792.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997713|gb|EDU66810.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660124|gb|EDX53504.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660957|gb|EDX54210.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250082|gb|EDY74862.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541931|gb|ACI60160.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378977|gb|EEH01342.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379924|gb|EEH02286.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 650 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 249/666 (37%), Positives = 364/666 (54%), Gaps = 30/666 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y A SI++LEGLE VR RPGMYIG T + LHH+ E++DN++DE + G+A Sbjct: 1 MNDSNKENKYTAESIKVLEGLEAVRKRPGMYIGSTQSEGLHHMIWEIVDNSIDEAMGGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +++V + +G + V D+GRGIPV H K S +E +LT LHAGGKFDN +Y++SGGL Sbjct: 61 TVVKVIIKKDGVIRVEDDGRGIPVGIHEK-TGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD 212 HGVG SVVNALS V V + +F G K ++ + GT I F PD Sbjct: 120 HGVGASVVNALSKNFKVWVNKNYVQHYVEFINGGHAIEPLKIINDKDIKEKGTTIEFIPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +I + + + + AYL+ V + E KE++++ GGLK Y Sbjct: 180 FEIMEENEWDELKIMA-RLKQLAYLNKGVNIEF-------ESEMTNRKEKWHYEGGLKEY 231 Query: 273 LQTKLENRSLISSEIFTGKTEK--------KGTHRGTVEWAIAWCEENPEITS-YCNTIL 323 + + + I G+ EK T+ E A + T +CN I Sbjct: 232 IADLNAEKEPLFDAIVYGEEEKEVKVPGHNDQTYNIKCEVAFQYNNSYNNSTHSFCNNIN 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381 T EGGTHE G ++A+TR + KYA + + I +D+ I+S+ P++ G Sbjct: 292 TTEGGTHEEGFKLAITRLLNKYAIDKKYLKDTDDKITKEDVSEGLTAIISIKHPNPQYEG 351 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK KL + + + V F+ +L +NP E+ K++ V++ +E R R + RE R+ Sbjct: 352 QTKKKLGNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRR 411 Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + LPGKLADCS + TE++IVEGDSAGGSAK R R QA+LPLRGKI+NV Sbjct: 412 KSPFESNSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVE 471 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +KI N++I +++ A G ++ E LRY K+IIMTDADVDG+HI LLLTFFY Sbjct: 472 KAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFY 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + M LI+ ++++ PPL++++ G YA+ ++ +KI K I R+KGL Sbjct: 532 RYMLPLIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNT---KYNIQRYKGL 588 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET MD R LL+V I + + LMG R +FI++ A + Sbjct: 589 GEMNPDQLWETTMDPKNRLLLKVNIED----AAIADKTFSLLMGDDVTPRKEFIEKNAKY 644 Query: 681 IDDVGT 686 + ++ Sbjct: 645 VKNIDA 650 >gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102] gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102] Length = 645 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 252/651 (38%), Positives = 369/651 (56%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIPV+ H + KS LE ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INADGSVTVTDDGRGIPVDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + Q++ RGIP++ L+ K + GT +TF+PD +IF Sbjct: 121 VVNALSEVVEVTVWRDKKVHLQRYERGIPVTELQTKPYKEARTGTSVTFKPDTQIFTTSI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK ++ ++ K P+ E + + GG+K Y+ + Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYNYKGGIKEYIAYMNREK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEIIYVQGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ + + ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TLNAIARKRNKIKENEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +L+ I+ + R RE V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLEFHPAIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N ++ L+ Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479 Query: 518 QALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY +++IMTDADVDGAHI +LLLTFFY+ LIEQ +++ Sbjct: 480 TALGLGVKGDEFDSNQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ +G Y + + K + + +F + I RFKGLGEM+ QL +T M+ Sbjct: 540 PPLFKVERGRNHEYCYSDREKNQAIAKFPANAN--YTIQRFKGLGEMMPQQLWDTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R + +VEI + LMG + R +FI+ S ++ D+ Sbjct: 598 TRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLD 644 >gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus lugdunensis M23590] gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus lugdunensis M23590] Length = 644 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 256/657 (38%), Positives = 387/657 (58%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+ IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YADQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS++L V V R TI+ Q + +G+P L++ + +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + +D L K + A+L+ + +++ E+ ++ +++ GG+K+Y Sbjct: 181 SEIFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQ----REDTYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K +E AI + + SY N I T EGGTHE Sbjct: 237 VELMNENKEPIHEEPIYIHQMKDDI---EIEIAIQYNSGYATNLLSYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + ++ V+ + F+ +L +NP A ++E I S R+ +K REV R+ + + Sbjct: 354 SEVRQVVDKLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+FIVEGDSAGGS K+ R+ QA+LPLRGKILNV + ++I Sbjct: 414 LPGKLADCSSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPLF++TQG + Y +++ K+ E K +ISR+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLFKLTQGKQKYYVFNDKELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ + R +L+V ++ + + + LMG + R +FI++ A + + Sbjct: 592 WETTMNPDNRMMLQVRLDDAI----EADKTFEMLMGDVVENRRQFIEDNAVYAT-LD 643 >gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319] gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319] Length = 657 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 261/668 (39%), Positives = 382/668 (57%), Gaps = 28/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 QNIEVTINEDNSITVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + + GTR F PDP Sbjct: 121 HGVGVSCVNALSTHMMSQVYRDGKIYQQEYEKGKPLYPVKVVGETQK-TGTRQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + + + AYL+ +K + + E E F+ GLK +++ Sbjct: 180 IFTTTV-YQWDIVARRMRELAYLNAGIKITLTDLRPDPETGKT-RTEVFHAKDGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ KTEK+ +E A+ + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++++ + EP+F GQTKTKL Sbjct: 295 FRAALTRTLKSYADNDPQISKQIEKAKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + YL ++P EA + VI + R+ RK RE RK + Sbjct: 355 GNSEVAGAVQQAVGEALSDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVENEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618 + M +IEQ HL++ +PPL++ T S Y + E+ +Q L+++ + I R+K Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|160935172|ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC BAA-613] gi|158441903|gb|EDP19600.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC BAA-613] Length = 657 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 268/663 (40%), Positives = 376/663 (56%), Gaps = 17/663 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + A +++Y A+ I+ILEGLE VR RP MYIG T + LHH+ E++DNA+DE +A Sbjct: 2 NQTSALSPVTEDYGAAQIQILEGLEAVRKRPSMYIGSTSSQGLHHMVYEIVDNAVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ LI+V L+ +G +TV DNGRGIP K S ++++ T LHAGGKFD+S Y++S Sbjct: 62 GHCTLIQVYLNKDGSVTVRDNGRGIPAGIQTK-TGLSAIQVVFTVLHAGGKFDDSNYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFR 210 GGLHGVG SVVNALS LHV V + ++Q + RGIP +P+++ GT +TF Sbjct: 121 GGLHGVGASVVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTHGTTVTFM 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI----AEKYGIPEKEEFYFP 266 PD IF A L + + A+L+ ++ + A F F Sbjct: 181 PDQDIFPSIAWDR-NILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAWSRTFCFQ 239 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTD 325 GLK ++ ++ + + I +G+ E E+A+ E S+ N I T Sbjct: 240 NGLKDFVSWLEQDGEPLYTGIISGRHETDKVQ---AEFALVHNSSYSEQLLSFANNISTP 296 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R AL+R + YA + + D+L +LSV +++ +F GQT Sbjct: 297 EGGTHVTGFRQALSRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQDAQFEGQT 356 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442 K KL S + VE + +L QNP A + + + + R R RE+ RKT Sbjct: 357 KQKLGSSHVRPVVEQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAREMARRKT 416 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ L LPGKLADCS ELFIVEGDSAGGSAK AR+R NQAVLPLRGKILNV A Sbjct: 417 ALSGLSLPGKLADCSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGKILNVEKA 476 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++I N +I ++ A G + E+LRY K+I+MTDADVDGAHI +LLLTF ++ Sbjct: 477 SLDRISANAEIKAMISAFGTGILDTFSLENLRYNKIILMTDADVDGAHITTLLLTFLFRF 536 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M LIE+ H+FL PPL+R+ +G K YA+ + ++ + + G +I R+KGLGE Sbjct: 537 MPKLIEEGHVFLAQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGT--YKIQRYKGLGE 594 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M A QL ET MD ++RTLLR+ IN + +T + + LMG + + R FI E A +I Sbjct: 595 MDAGQLWETTMDPSRRTLLRITIND-MEMYHETCQTFSILMGDEVEPRKNFILEHAQYIS 653 Query: 683 DVG 685 + Sbjct: 654 MLD 656 >gi|124021870|ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9303] gi|123962156|gb|ABM76912.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9303] Length = 655 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 371/656 (56%), Gaps = 16/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVFEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L +G ++ DNGRGIP + H + KS LE +LT LHAGGKF + Y++SGGL Sbjct: 62 DEILVVLGPDGSASIADNGRGIPTDVHSR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG + + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + +++ + G P +E +++ GG+K Sbjct: 181 DEEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y+ + + EI +EK + + I + N I T +GGTH Sbjct: 241 EYVTYMNAEKDALHPEIIYVNSEKDNV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A ++ ++ +++ +LSV + +PEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +L+LTFFY+ +L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ +G Y ++E Q L F + K I RFKGLGEM+ Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEADLQTTLSGFPE--KANYTIQRFKGLGEMMPK 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD + R + RVE+ L + LMG K R +FI+ ++ +D Sbjct: 598 QLWETTMDPSTRMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|326789144|ref|YP_004306965.1| DNA gyrase subunit beta [Clostridium lentocellum DSM 5427] gi|326539908|gb|ADZ81767.1| DNA gyrase, B subunit [Clostridium lentocellum DSM 5427] Length = 634 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 378/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD + I+ILEGL+ VR RPGMYIG T K LHHL E++DNA+DE +AG+ + I+V+ Sbjct: 2 AATYDENQIQILEGLQAVRKRPGMYIGSTSSKGLHHLVYEIVDNAVDEALAGFCSFIKVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V+DNGRGIPV HP+ ST+E++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 IHADNTISVIDNGRGIPVGIHPQ-KGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V V + +KFSRG + PL GT + F+PD +IF + Sbjct: 121 VVNALSEWLTVEVYTDGKVHQEKFSRGDVVQPLTVIGDTNKV-GTYVRFKPDTEIFEEVI 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + + A+L+ +K ++E E+ F++ GG+K ++Q +++ Sbjct: 180 -FDYKVLEQRLKETAFLTKALKIQLVDEREGQEQNKT-----FHYEGGIKEFVQHLNKHK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I EIF + EK G VE A + + S+ N I T EGGTH SG R A+T Sbjct: 234 TPIYDEIFYCEGEKDGI---AVEVAFQHNDSYVENLFSFVNNINTPEGGTHLSGFRTAIT 290 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + YA + ++ DD+ ++S+ I +P+F GQTKTKL S +A V+ Sbjct: 291 KNLNDYARKMGLLKDSDKNLTGDDIREGMTAVISIKIGDPQFEGQTKTKLGSSEAAGAVQ 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + D ++L QNP +++ V+ R+ + RK+A+ LPGKLADC Sbjct: 351 SVFGDQLTYFLEQNPNVGKVIVQKGVMAARARDAARKARELTRRKSALEGNALPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ A E++IVEGDSAGGSAK AR+ QA+LPLRGKILNV +K+ NQ+I ++ Sbjct: 411 SEKDASKCEIYIVEGDSAGGSAKSARSPKTQAILPLRGKILNVEKVRIDKMLENQEIRNM 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G + LRY K+I+MTDADVDGAHI +LLLTF Y+ +LIEQ H+++ Sbjct: 471 ITAFGAGISDDFDISKLRYGKIILMTDADVDGAHIRTLLLTFLYRYYRELIEQDHVYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+ + + K YA D++ +K+LEE + G ++ R+KGLGEM A QL ET MD Sbjct: 531 PPLYLVEKNKKKHYAFDDKELEKLLEEVGRTGITRM--QRYKGLGEMNAEQLWETTMDPE 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L++V I+ + KLMG + R +FI E A + + Sbjct: 589 SRVLVKVNIDD----AAAADEIFTKLMGDDVEPRRQFINEHAHKVTYLD 633 >gi|78188013|ref|YP_378351.1| DNA gyrase, B subunit [Chlorobium chlorochromatii CaD3] gi|78170212|gb|ABB27308.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3] Length = 637 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 375/649 (57%), Gaps = 25/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A++I++L+G+E VRMRP MYIG + LHHL E++DN++DE + G+ + I V+L+ Sbjct: 6 YGATNIQVLDGIEHVRMRPAMYIGDIHSRGLHHLVYEIVDNSIDETLGGFNDYIFVALNA 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV+D+GRGIPV+ HP+ KS LE+++T + AGGKFD Y++SGGLHGVG SVVN Sbjct: 66 DGSITVIDHGRGIPVDMHPE-KQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVGASVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ V V R + Q++ RG+P ++ ++RGT+ TF PD IF F Sbjct: 125 ALSEWCEVEVYRDGKAYYQRYERGVPQGDVKVIGD-SDQRGTKTTFMPDGTIFKT-TEFR 182 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ++ + A+L+ ++ E+EEF+F GG+ +++ +NR + Sbjct: 183 KEIIIDRMRELAFLNKNLRIIVQD--------TNGEQEEFHFEGGICEFVRFTDQNRLNL 234 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E E+ GT VE A+ + + + SY N I T EGGTH +G R ALTR + Sbjct: 235 LREPIYLYGERDGT---VVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTL 291 Query: 343 KKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA+ +++ DD ++SV + EP+F GQTKTKL + + Q VE + Sbjct: 292 NSYAQKNDLLKNLKLTLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVV 351 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 D + NP ++E V + R RK +E RK+ + LPGKLADCS N Sbjct: 352 NDQLAEFAESNPNTLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSIN 411 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ N++I ++ A Sbjct: 412 DPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILA 471 Query: 520 LGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 LG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M +IE +++ PP Sbjct: 472 LGTSFGDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVYIAQPP 531 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK--IEISRFKGLGEMLASQLKETAMDAN 636 L+ + G YA D++ + I++ KK K K I I R+KGLGEM QL T MD Sbjct: 532 LYLVKSGKDQHYAWDDDERNSIVDNMKKMQKSKANIHIQRYKGLGEMNPEQLWSTTMDPA 591 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL V + + + + LMG K + R +FI++ A ++ + Sbjct: 592 HRSLLLVSVENAM----EADQVFSTLMGDKVEPRREFIEKNARYVRRLD 636 >gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215] gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215] Length = 655 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 259/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIVLRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209 GGLHGVGISVVNALS+ ++VTV R + F+Q+F +G+ +K+ +K+GT I F Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKKGTTICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF F+ A L + AYL+G VK + ++ E E + + GG+ Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y++ + I EI ++++ + + I + N I T +GGT Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQRENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ I ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ R+ RE V RK+ + Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E + +E F ++ I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENAN--YNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ +S +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649 >gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01] gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01] Length = 640 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 256/655 (39%), Positives = 387/655 (59%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS++L V V R TI+ Q + +G+P L++ + +K GT I F+ D + Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L K + A+L+ + +++ E+ ++ +++ GG+K+Y++ Sbjct: 179 IFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQ----REDTYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ I E K +E AI + + SY N I T EGGTHE G Sbjct: 235 LMNENKEPIHEEPIYIHQMKDDI---EIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 ++ V+ + F+ +L +NP A ++E I S R+ +K REV R+ + + LP Sbjct: 352 VRQVVDKLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +E+FIVEGDSAGGS K+ R+ QA+LPLRGKILNV + ++I NN Sbjct: 412 GKLADCSSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPLF++TQG + Y +++ K+ E K +ISR+KGLGEM A QL E Sbjct: 532 YVYIAQPPLFKLTQGKQKYYVFNDKELDKLKSELSPT--PKWQISRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ + R +L+V ++ + + + LMG + R +FI++ A + + Sbjct: 590 TTMNPDNRMMLQVRLDDAI----EADKTFEMLMGDVVENRRQFIEDNAVYAT-LD 639 >gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus] Length = 644 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 385/657 (58%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 NTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVIIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS++L V V R +TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L K + A+L+ + ++E E+ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQ----REDTYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K +E A+ + + SY N I T EGGTHE Sbjct: 237 VELLNENKEPIHEEPIYIHQTKDDV---EIEIAMQYNSGYATNLLSYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D ++S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRILNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + ++ V+ + F+ +L ++P A ++E I S R+ +K RE RK+A+ Sbjct: 354 SEVRQIVDRLFAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+F+VEGDSAGGS K+ R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG + Y ++ K+ E K +ISR+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLAQGKQKYYVFNDRELDKLKSELSPT--PKWQISRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R +L+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPENRMMLQVKLEDAI----EADHTCEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|150024625|ref|YP_001295451.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86] gi|149771166|emb|CAL42633.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86] Length = 647 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 263/662 (39%), Positives = 383/662 (57%), Gaps = 25/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +++ DNY A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + G+ Sbjct: 1 MSDEIKKDNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ +G ++V DNGRGIPV H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 61 DTIRVDINEDGSISVEDNGRGIPVGIHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVA-RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG+SVVNALS+ L TV I+ Q++ +G L P+++ + RGT +TF PDP Sbjct: 120 HGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETTK-RGTIVTFYPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + L + ++L+ + ++ +E +K G E F+ GLK Y+ Sbjct: 179 SIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKRE-KDKDGNFVSEIFHSTEGLKEYI 237 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + NR I + VE A+ + I SY N I T EGGTH Sbjct: 238 RYLDGNRE---PIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQ 294 Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R LTR +KKYA+ + K I DD I+SV + EP+F GQTKTKL + Sbjct: 295 GFRTGLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNR 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449 + V A+ D ++YL +NP +A +++ VI ++ R +K RE+ RKT + L Sbjct: 355 EVVSPVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGL 414 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ Sbjct: 415 PGKLSDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFE 474 Query: 510 NQQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ ALG + E LRY KV+IM DAD+DG+HI++L+LTFF++ M Sbjct: 475 NEEIRNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADIDGSHISTLILTFFFRFMK 534 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +LIEQ H+++ +PPL+ + +G K YA +E + + E G I R+KGLGEM Sbjct: 535 ELIEQGHIYIATPPLYLVKKGNKKEYAWNEVQRDQANERMG----GSATIQRYKGLGEMN 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL +T ++ RTL +V I+ SL + + LMG + R +FI++ A + ++ Sbjct: 591 AEQLWDTTLNPEFRTLRQVNID----SLAEADRVFSMLMGDEVPPRREFIEKNAVYA-NI 645 Query: 685 GT 686 Sbjct: 646 DA 647 >gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142] gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142] Length = 642 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 376/653 (57%), Gaps = 19/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AGY IE Sbjct: 2 TTKSNYGAEQIQVLEGLEPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + ++ +G +TV D+GRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVG Sbjct: 62 IDINPDGSVTVTDDGRGIPTDIHP-STGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ + V V R + + +Q++ RGIP++ LE K + GT I+F PD KIF Sbjct: 121 VSVVNALSEWVIVKVWRDDEVHTQRYERGIPITNLETKPDKNHSTGTSISFLPDKKIFTV 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + L + AYL+ V+ ++ +++ P E + + GG+K Y+ Sbjct: 181 GIEFDYSTLAGRLRELAYLNAGVRITFTDNRK-----EEPHVESYCYEGGIKEYVTYMCR 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +I EK GT + V + + + N I T +GGTH GL+ L Sbjct: 236 DKDPLHQDIIFVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294 Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + A + ++ +++ G++SV + EPEF GQTKTKL + + + V Sbjct: 295 TRTMNNVARKRNKLKDNDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++ + + YL NP A ++E ++ + R+ RE V RK+ + LPGKLAD Sbjct: 355 DSLVGEVLTEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+N+ +I N +I Sbjct: 415 CSTRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQS 474 Query: 516 LVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + + + LRY +++IMTDADVDGAHI +LLLTFFY+ L++Q ++++ Sbjct: 475 LITALGLGIKGEEFDPAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ +G VY ++E Q+ + + I RFKGLGEM+ +QL +T M+ Sbjct: 535 ACPPLYKVERGRNHVYCYNERQLQEHINSLPANAN--YSIQRFKGLGEMMPTQLWDTTMN 592 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R + +VEI + LMG + R +FI+ +D D+ Sbjct: 593 PETRRMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLD 641 >gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506] gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506] Length = 646 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 366/652 (56%), Gaps = 15/652 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIP K KS +E ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INADGSVTVTDDGRGIPTGIVAK-TGKSGIETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + +Q+F RGIP++ L K N+ GT ++F PD +IF Sbjct: 121 VVNALSEWVEVTVWRDKKVHNQRFERGIPVTDLVDKPSKENRSGTSVSFLPDTQIFSTGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK +S + K P E + + GG+K Y+ ++ Sbjct: 181 EFDYTILSGRLRELAYLNAGVKITFSDRRLELLKSSEPHIETYCYEGGIKEYIAYMNRDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + E+ + E+ + V + + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEVIFIQGERNNV-QVEVSLQWCIDAYSDNVLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TMNAIARKRNKIKENEPNLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL P A +LE I+ + R+ R+ V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLEFRPQVADTILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPSKSEIYLVEGDSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479 Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG R ++ LRY ++IMTDADVDGAHI +LLLTFFY+ L++Q ++++ Sbjct: 480 TALGLGIRGDEFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL-EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G Y + + Q ++ EF + I RFKGLGEM+ QL ET M+ Sbjct: 540 PPLYKVERGRNHFYCYSDRELQNLIRNEFPANAN--YTIQRFKGLGEMMPQQLWETTMNP 597 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 RTL RVEI + LMG + R +FI+ + D+ Sbjct: 598 ESRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLD 645 >gi|256545954|ref|ZP_05473309.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170] gi|256398376|gb|EEU11998.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170] Length = 634 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 262/648 (40%), Positives = 386/648 (59%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+AS+IR+L+GLEPVR+RPGMYIG T E+ LHHL EV+DN++DE +AG + I++S+ Sbjct: 4 SEYNASNIRVLKGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKISI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D N +TV D+G GIP+E HP+ KSTLE +LT LHAGGKFD+ Y++SGGLHGVG+SV Sbjct: 64 DENNIVTVEDDGSGIPIEKHPQ-TGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVGVSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V R+ I F RG P S LE + GT+ITF+ DP+IF Sbjct: 123 VNALSEYLIAEVKREGHIHRMTFERGKPTSDLEIVGDTKE-SGTKITFKADPEIFDVTV- 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ V+ + ++ +E F + GG+K +++ N++ Sbjct: 181 YDKKTLENRFREMAFLNKGVRLIFEDKRDESEIE-------FKYDGGIKEFVEYLNRNKT 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I E+ + ++ T +E + + + I ++ N I T EGGTH SG R ALTR Sbjct: 234 PIFKEVPYFEGRQEST---EIEISFQYTDGYSENILTFANNIYTLEGGTHLSGFRSALTR 290 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA + ++ DD I+SV I P+F GQTK KL + + + V+ Sbjct: 291 SVNDYARKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDA 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + ++L +NP A +++ + R RK R+ +++ + LPGKLADC Sbjct: 351 FFSEHMGNFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQ 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A ++I N ++I ++ Sbjct: 411 SQDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMI 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G S++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M L++ H+++ P Sbjct: 471 TAFGTGIGSEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDGGHIYIAQP 530 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++I+ G K Y + ++ +I++E+K +ISR+KGLGEM A QL ET MD Sbjct: 531 PLYKISSGKKERYCYTDKELDEIVKEWKVDN---YKISRYKGLGEMNAEQLWETTMDPEN 587 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V + +S T + + LMG K + R +FI+E A +++++ Sbjct: 588 RVLLQV--YEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633 >gi|288932528|ref|YP_003436588.1| DNA gyrase subunit beta [Ferroglobus placidus DSM 10642] gi|288894776|gb|ADC66313.1| DNA gyrase, B subunit [Ferroglobus placidus DSM 10642] Length = 621 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 256/646 (39%), Positives = 374/646 (57%), Gaps = 27/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I +L LE VR RPGMYIGG + LHHL EVIDN++DE +AGY + I V L Sbjct: 2 EEYTAEQIEVLSDLEAVRKRPGMYIGGVGIRGLHHLLWEVIDNSVDEHLAGYCSRIRVVL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +V D+GRGIP E HP K LEI++T LHAGGKF Y++SGGLHGVG+SV Sbjct: 62 HRDGSASVEDDGRGIPTEMHP--LGKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ + V V R I+ Q++ RG+P++PLE + N+ GT + F+PD +IF Sbjct: 120 VNALSEWVEVIVKRNGKIYRQRYERGVPVTPLEIIGET-NETGTYVRFKPDEEIFETT-E 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + AYL+ +K ++ +KEEFY G+ +++ NR Sbjct: 178 FRYDIVAHRLRELAYLNKGLKLELYDERS-------GKKEEFYSERGIVEFVEHLNANRE 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTR 340 I S++ E+ G +VE A+ + + I +Y N I EGGTH G R ALTR Sbjct: 231 KI-SDVIYISGERNGI---SVEVALQYTNTDFETILAYANNIHNVEGGTHVVGFRAALTR 286 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 I +Y + K I D+ ++SV + EP+F GQTKTKL + + + VE + Sbjct: 287 AINEYGK-KNVKNFKPITGVDVREGLTAVISVKVPEPQFEGQTKTKLSNSEVKTAVETIV 345 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 + ++P +A K++E I ++ R ++ R+V ++ LPGKLADCS Sbjct: 346 YSELMRWFEEHPEQANKIIEKCILAAKAREAAKRARDVIKRRE-EVATLPGKLADCSSKN 404 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 ELFIVEG+SAGGSAKQAR+R QA+LP+RGKI+NV AG ++ N +I ++ A+ Sbjct: 405 PEERELFIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMVRVLKNDEIKAIIAAI 464 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + RY ++IIMTDAD+DGAHI +LLLTFFY+ M LIE +L++ PPL+ Sbjct: 465 GAGFGKDFDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLY 524 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R+ +G K Y + ++ + +L+ E+ R+KGLGEM QL ET MD +R L Sbjct: 525 RVKKGKKVYYLYSDKELENLLKRIGDA-----EVQRYKGLGEMNPEQLWETTMDPKRRIL 579 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++V + ++ ++ LMG ++R +FI E A+ + ++ T Sbjct: 580 IQVTLED----AAMAEEIVSILMGENTEDRKRFIMEHATEVRNLDT 621 >gi|258647794|ref|ZP_05735263.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259] gi|260852245|gb|EEX72114.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259] Length = 653 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 263/664 (39%), Positives = 388/664 (58%), Gaps = 26/664 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 NQ+ S NY AS+I++LEGLE VR RP MYIG +K LHHL E +DN++DE +AGY Sbjct: 3 GNQNKSSNYSASNIQVLEGLEAVRKRPAMYIGDISDKGLHHLVYETVDNSIDEALAGYCT 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV++ + + V DNGRGIPV+ HPK ++S LE+++T LHAGGKFD +Y++SGGLH Sbjct: 63 HIEVTICTDNSIIVQDNGRGIPVDMHPK-EHRSALEVVMTVLHAGGKFDKGSYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ +G PL P++ + + RGT+ F PD + Sbjct: 122 GVGVSCVNALSKHMTSQVFRDGKIYQQEYEQGKPLYPVKVVGETQ-LRGTKQQFWPDDTV 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ L + A+L+ +K + + ++ G ++EEFY GL+ +++ Sbjct: 181 FTATI-YNYDTLATRMRELAFLNAGLKITLTDLR--PDEEGNTKQEEFYSEQGLREFVRY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +R+ + +++ T K +E AI + E SY N I T EGGTH G Sbjct: 238 VDSSRTHLFNDVIYISTNKADIP---IEVAIMYNTSYSENVHSYVNNINTIEGGTHLIGF 294 Query: 335 RVALTRGIKKYAELTQ----NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 R A+TR +KKYAE T K I I +D ++SV + EP+F GQTKT+L + Sbjct: 295 RQAITRVLKKYAEQTAAKQIEKAKIEISGEDFREGLTAVISVKVAEPQFEGQTKTRLGNT 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + V A+ + +YL ++P EA +++ VI + R+ RK RE ++ + L Sbjct: 355 EVTGAVNQAVGEALTNYLEEHPKEAKLIVDKVILAATARIAARKARESVQRKNPMSGGGL 414 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS A ELF+VEGDSAGGSAKQAR+R+ QA+LPLRGKILNV A K Sbjct: 415 PGKLADCSSKDAAVCELFLVEGDSAGGSAKQARSRTTQAILPLRGKILNVEKAMWHKAFE 474 Query: 510 NQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 + ++ +++QALG R + E LRY K+IIM DADVDG HIA+L++T FY+ M Sbjct: 475 SDEVNNIIQALGVRFGLDEDSKEANIEKLRYHKIIIMADADVDGQHIATLIMTLFYRYMP 534 Query: 565 DLIEQKHLFLISPPLF--RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +IE +L++ PPL+ R +G Y ++E + + +E++ + I R+KGLGE Sbjct: 535 QIIEDGYLYIAMPPLYRCRAKKGHAEEYCYNETARLRFIEQYGDGSEDNITTQRYKGLGE 594 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET M+ R L +V + S + + + LMG R +FI++ A++ Sbjct: 595 MNPEQLWETTMNPETRLLKQVSLE----SATNADYTFSMLMGEDVGPRREFIEKNATYA- 649 Query: 683 DVGT 686 ++ Sbjct: 650 NIDA 653 >gi|284037876|ref|YP_003387806.1| DNA gyrase subunit beta [Spirosoma linguale DSM 74] gi|283817169|gb|ADB39007.1| DNA gyrase, B subunit [Spirosoma linguale DSM 74] Length = 666 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 248/670 (37%), Positives = 368/670 (54%), Gaps = 23/670 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + E+ ++ A + + S+ Y A +I++LEGLE VR RP MYIG + LHHL EV+DN+ Sbjct: 2 TNELIEADAPVDTTKSN-YGADNIQVLEGLEAVRKRPSMYIGDVGIRGLHHLIWEVVDNS 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGY + I V+++ + +TV DNGRGIP + K KS LEI +T LHAGGKFD Sbjct: 61 IDEALAGYCDKISVTINPDNSITVQDNGRGIPTGINTKM-GKSALEIAMTILHAGGKFDK 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 TY++SGGLHGVG+S VNALS ++ V V R+ IF Q++ G+P + + + GT Sbjct: 120 DTYKVSGGLHGVGVSCVNALSTDVRVEVHREGKIFEQEYKIGVPQYDVRVIGEATD-TGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 F+PD IF + + + + AYL+ + +E+ E +++F+ Sbjct: 179 TTHFKPDASIFTETV-YKYDTVAGRLRELAYLNKGIHIFLKDMREVDETGEPVRQDDFFS 237 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325 GGL +++ E R + KG V E + SY N I T Sbjct: 238 EGGLIEFVEFLDETRPALDGMKPIYMENTKGATPVQVALVY-NYEAGENVLSYVNNINTH 296 Query: 326 EGGTHESGLRVALTRGIKKYAELT-----QNKRAISIISDDLMISAVGILSVFIREPEFA 380 EGGTH G R ALTR +K YA+ +N ++ +D ++SV ++EP+F Sbjct: 297 EGGTHVQGFRSALTRVLKNYADKNPGVLPKNSGKVTFSGEDFRKGLTAVISVKVQEPQFE 356 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQTKTKL + D V + D + +L +NP A +++ V+ ++ R+ + Sbjct: 357 GQTKTKLGNQDVVSAVSQTMADLLETWLEENPKTAQGIVKKVLVSAQARIAADLAYKRIM 416 Query: 441 KTAIR---KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 + LPGKLADCS EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKIL Sbjct: 417 TERKDFMGGMGLPGKLADCSDTDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKIL 476 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIA 552 NV A KI N++I ++ ALG R + + LRY K+IIMTDADVDG+HI Sbjct: 477 NVEKAMEHKIYENEEIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIR 536 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GK 611 +L+LT FY+ M LI+ ++++ PPL+ + +G + Y E ++ ++E G+ Sbjct: 537 TLILTLFYRNMKALIDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREEN 596 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 + + R+KGLGEM A QL T M+ + R+L V + S D + LMG + R Sbjct: 597 VGVQRYKGLGEMNAEQLWSTTMNPDTRSLKVVTVE----SAADADHVFSTLMGDEVAPRR 652 Query: 672 KFIQERASFI 681 +FI+ A + Sbjct: 653 EFIERNAKYA 662 >gi|99081581|ref|YP_613735.1| DNA topoisomerase IV subunit B [Ruegeria sp. TM1040] gi|99037861|gb|ABF64473.1| DNA topoisomerase IV B subunit [Ruegeria sp. TM1040] Length = 669 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 349/652 (53%), Positives = 448/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + S+SD YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 24 SPSSSDTYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 83 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 84 IEVELHADYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 143 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VA+ +F Q+FSRG PL +EK N+RGT +TF D +IF Sbjct: 144 VGSSVVNALSDSLVVQVAKNKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEQIF 203 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARL K+ +SKAYL V+ W K + P++ F+FPGGL+ YL Sbjct: 204 GS-HRFKPARLFKLVRSKAYLFSGVEIRW---KSAIDDGETPQEATFHFPGGLRDYLTEV 259 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L S+ + F GK E +K G VEWAI W + SYCNT+ T EGGTH +G Sbjct: 260 LGKSSVYADAPFAGKVEFREKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAG 319 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDLM ++S FI +P F GQTK +L + A Sbjct: 320 FWSAILKGIKAYGELVGNKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEAAA 379 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VEN++RD FD++L + A +L+++I R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 380 KMVENSVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETARKSATKKLRLPGKL 439 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K ARNR QA+LPL+GKILNV A S K+ +N +I Sbjct: 440 TDCTSKDRSGTELFIVEGDSAGGSGKGARNREYQALLPLKGKILNVLGAASGKLTSNAEI 499 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+ HL+ Sbjct: 500 RDLCEALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLY 559 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + +E+ GKGKI++SRFKGLGEM A LKET M Sbjct: 560 LACPPLFRLTQGAKRVYCLDEAERDMWMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 618 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 619 DPKTRKLIRVTIDEDE--PGETSDLVERLMGKKPELRFQYIQENAKFVEELD 668 >gi|302872928|ref|YP_003841561.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B] gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B] gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B] Length = 636 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 251/652 (38%), Positives = 372/652 (57%), Gaps = 22/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I Sbjct: 2 TDKKQSYDASQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGFCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + ++V D+GRG+PV H K N+ +E+I+T LHAGGKF Y++SGGLHGV Sbjct: 62 DVIIHEDNSISVKDDGRGMPVGMHAKM-NRPAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ VTV+ I Q+F RG + LE + GT + F PD +IF Sbjct: 121 GASVVNALSETCIVTVSIDGKIHRQEFHRGNVATELEVIGETEEH-GTEVFFTPDHEIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L++ + A+L+ + + + + F++ GG+K+++ Sbjct: 180 TL-EFDYDTLVQRLRELAFLNKGINISIEDRR-------NDKSDSFHYDGGIKSFVSYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ + E + + VE A+ + + I S+ N I T EGGTH +G + Sbjct: 232 RNKEALFPEPIYIEGIQNDIL---VEIALQYNDTYQENIFSFANNIDTAEGGTHLAGFKN 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR I YA + ++ +D+ I+SV I EPEF GQTKTKL + + + Sbjct: 289 AMTRVINDYARKFGFLKENDKNLSGEDVREGLTAIISVKIPEPEFEGQTKTKLGNSEVRG 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ L +L +NP +++ + S R +K RE RK+ + LPGKL Sbjct: 349 IVDSILGGSVSTFLEENPSVGKIIVDKALTASRAREAAKKARELTRRKSILESTSLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E++IVEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI + I Sbjct: 409 ADCSSKDPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + + LRY ++IIMTDADVDGAHI +LLLTFFY+ M D+IE+ H++ Sbjct: 469 RSMITAFGAGIGKDFDLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRYMRDMIEKGHVY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++++ K YA++++ + IL++ + I R+KGLGEM A QL +T M Sbjct: 529 IAQPPLYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTV-IQRYKGLGEMDAQQLWDTTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R LL+V++ + + + LMG K + R +FIQE A + ++ Sbjct: 588 DPEHRLLLKVDMGEAMM----ADEIFTILMGEKVEPRREFIQENAKNVVNLD 635 >gi|258513372|ref|YP_003189594.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771] Length = 635 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 264/653 (40%), Positives = 376/653 (57%), Gaps = 24/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y A I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY + Sbjct: 2 PERITERYGAEEIQVLEGLEAVRRRPGMYIGSTGAKGLHHLVYEVVDNSIDEAMAGYCDH 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV ++ + +TV DNGRGIPV+ H K S +E+++TTLHAGGKF Y++SGGLHG Sbjct: 62 IEVFINEDNSITVTDNGRGIPVDIHSK-TGNSAVELVMTTLHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS L V V RQ IF Q++ RGIP+S L+ GT+ITF PD +IF Sbjct: 121 VGVSVVNALSKWLEVEVRRQGKIFFQRYERGIPVSDLKIVGDSS-FTGTKITFSPDEEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 D F L + Q AYL+ RVK E + + GG+K ++ Sbjct: 180 EDVI-FSRETLEQRLQELAYLNSRVKIYLKDFINNLE-------FSYMYEGGIKDFVAHI 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 +++ L+ EK VE A+ + + E Y N I T +GGTHE+G R Sbjct: 232 NQDKILLPEAPLYFVREKDHVM---VEVAMQYTDAYFENLFSYVNNIHTIDGGTHEAGFR 288 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA+ + ++ +D+ ++S+ + EP+F GQTK KL + + + Sbjct: 289 SALTRVINDYAKKNNLIKNNEGNLSGEDIREGLTAVISIKVPEPQFEGQTKGKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGK 452 V++ + + +L +NP + K++E I R+ + RK + LPGK Sbjct: 349 GIVDSVVAEGLSTFLEENPAVSKKIIEKSISAFRAREAARKARELTRRKNVLESSTLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +KI NN + Sbjct: 409 LSDCSNRDPSESELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLDKILNNDE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ALG + RY K+IIMTDADVDG+HI +LLLTFFY+ M LIE ++ Sbjct: 469 IRAMITALGTGIGEDFDITKARYHKLIIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 F+ PPL+R+ +G +Y + + + L+E ++G I I R+KGLGEM A QL +T Sbjct: 529 FIAQPPLYRLKKGKMEIYLYSDRDLENKLKEVGRNG---ISIQRYKGLGEMDAQQLWDTT 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD RT+L VE+ + + + LMG + + R FI + A + ++ Sbjct: 586 MDPENRTILMVELE----NAAEADKIFDTLMGDRVEPRRSFINKHAHDVRNLD 634 >gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228] Length = 640 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 261/649 (40%), Positives = 392/649 (60%), Gaps = 23/649 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY + + V + Sbjct: 8 NYEAEHIQVLEGLEAVRKRPGMYIGSTSLEGLHHLVYEVVDNSIDEAMAGYCSEVIVEIK 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + V D+GRGIPVE HPK +K +E+++TTLHAGGKF Y++SGGLHGVGISVV Sbjct: 68 PGNIIKVQDDGRGIPVEIHPKV-DKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISVV 126 Query: 163 NALSDELHVTV-ARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NAL++ + V + + ++ QK+ RGIP L+ N GT I F+PDP IF + Sbjct: 127 NALTEWMEVEIAWKDGKVYKQKYERGIPQHELQLIGNCDGNCTGTTIEFKPDPLIFEEI- 185 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L K + A+L+ + +++ ++E+F+F GGL ++++ +++ Sbjct: 186 DFDFKLLAKRLKELAFLNKGINIKIVDNRKE-----EVQQEDFHFDGGLISFVEYLSQSK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALT 339 + SE + E + G++E AI + + + N I T EGGTH SG + A T Sbjct: 241 KPLLSEPIYIEDEAE---EGSIEVAIMYHQGYNTSLYTFANNINTKEGGTHLSGFKSATT 297 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R YA + ++ D+ + I+SV + EP+F GQTKTKL + + + V+ Sbjct: 298 RTFNDYARNKNLLKDGDDNLKGQDIREGMIAIISVKLSEPQFEGQTKTKLGNSEMRGFVD 357 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 +A+ YL +NP ++E I + R RK R+ RK+A+ LPGKLADC Sbjct: 358 SAVSSFLKTYLEENPKVGKAIIEKAISAAHARKAARKARDLTRRKSALTSTALPGKLADC 417 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ A TE++IVEGDSAGGSAKQ RNR QA+LPL+GKILNV + KI NN +I L Sbjct: 418 SKRKADDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRAL 477 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G ++ ++RY+++IIMTDADVDGAHI +LLLTFFY+ M L+E ++++ Sbjct: 478 ITAIGTGVGEEFDLTNIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLLENGNIYIAQ 537 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G + Y ++++ ++++EE GK ++ + R+KGLGEM SQL +T MD Sbjct: 538 PPLYKVKKGRREEYVYNDKALKELIEEI---GKDRVSMQRYKGLGEMNPSQLWDTTMDPE 594 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V+I + ++ + LMG K R +FIQ+ A + ++ Sbjct: 595 NRILLQVDIEDAIR----ADETFSILMGDKVAPRREFIQKHAREVKNLD 639 >gi|126463188|ref|YP_001044302.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17029] gi|126104852|gb|ABN77530.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 663 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A IEV L Sbjct: 23 ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGVG SV Sbjct: 83 HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGI P++ N+RGT ITF PDP+IF Sbjct: 143 VNALSDTLRVEVARNRELWMQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ARL+KM +SKAYL V+ W K P++ F+FPGGL YL +L S Sbjct: 202 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258 Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + F GK ++K G+VEWAI W + I SYCNT+ T EGGTHESG A+ Sbjct: 259 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +GI+ Y EL +N++A I DD++ ++SVFIREP+F GQTK +L + +A + VEN Sbjct: 319 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEAAKLVEN 378 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A+RD FD++L N A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DCS Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A S K+ N +I DL Q Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 498 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG +++ ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+L PP Sbjct: 499 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+TQG K +Y D+ K+ + + GKGKI++ RFKGLGEM A LK+T M+ R Sbjct: 559 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662 >gi|240139869|ref|YP_002964346.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1] gi|240009843|gb|ACS41069.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1] Length = 685 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 396/690 (57%), Positives = 500/690 (72%), Gaps = 11/690 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D + DLF +E+ ++ + SPA A ++A YDAS+I +LEGLEPVR Sbjct: 1 MSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 60 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ Sbjct: 61 RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 120 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALSD L V VAR T++ Sbjct: 121 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 180 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG LE +V+N+RGTR+ F PD +IFG FD RL KM +SKAYL G Sbjct: 181 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 239 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + E E + FPGGL YL +E + L+ IF+GK K G+H Sbjct: 240 VEIRWRCAPSLLEGLEDVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 298 Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWA+AW ++ SYCNTI T EGGTHE+GLRVAL R ++++AE KR ++ Sbjct: 299 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 358 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+M + +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L +P +A K Sbjct: 359 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 418 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS G+E+FIVEGDSAGGS Sbjct: 419 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 478 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R+ QAVLPLRGKILNVASA +K+ NQ I DL ALGC T + +RE DLRY++ Sbjct: 479 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 538 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M LI++ HL+L PPL+RI+QG KS YA D+ K Sbjct: 539 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 598 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++I++ K+G K+EI RFKGLGEM+ +QLKET MD KRTLLRV I + + T D Sbjct: 599 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 654 Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685 ++ +LMG K + RF FI ERASF D ++ Sbjct: 655 TVERLMGNKPEARFAFITERASFADGTELD 684 >gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413] gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413] Length = 645 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 368/651 (56%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIP + H + KS LE ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INADGSVTVTDDGRGIPTDTHSR-TGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + Q++ RGIP++ L K + GT ++F+PD +IF + Sbjct: 121 VVNALSEVVEVTVWRDKKVHIQRYERGIPVTELIAKPYKEARTGTSVSFKPDSQIFTNSI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK ++ ++ K P+ E + + GG+K Y+ ++ Sbjct: 181 EFDYITLSSRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEIIYVQGERNNV-QIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ + + ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TLNTIARKRNKIKENEANLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +L+ I+ + R RE V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEYLEFHPGIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY ++IIMTDADVDGAHI +L+LTFFY+ LIEQ +++ Sbjct: 480 TALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + E Q+ + +F + I RFKGLGEM+ QL T M+ Sbjct: 540 PPLYKVERGRNYEYCYSERDLQQAIAKFPANAN--YTIQRFKGLGEMMPEQLWTTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 RTL RVEI + LMG + R +FI+ S + D+ Sbjct: 598 TRTLKRVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644 >gi|256831260|ref|YP_003159987.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603] gi|256684791|gb|ACV07684.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603] Length = 686 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 253/692 (36%), Positives = 364/692 (52%), Gaps = 33/692 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +L + P++P + A YDA++I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 1 MAELNTTATDPNTPTQSVSPAQHQGAYDANAITVLEGLEAVRKRPGMYIGSTGERGLHHL 60 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+ + I V++ +G L V DNGRGIPV HP + T+E+++T L Sbjct: 61 VYEVVDNSVDEALAGHCDTINVTILEDGALEVSDNGRGIPVAIHP-TEGRPTVEVVMTIL 119 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF S Y +SGGLHGVGISVVNALS + + R + Q F+ G ++ Sbjct: 120 HAGGKFGGSGYAVSGGLHGVGISVVNALSSRVETVIRRDGYTWHQSFADGGKPVGELRQG 179 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 + ++GT TF PD IF FD L Q A+L+ + + + Sbjct: 180 EPTEEKGTTQTFWPDADIFET-VDFDFETLRARFQQMAFLNKGLSITLTDKRPDHADVSG 238 Query: 258 P--------------EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGT 301 + + + GL Y+ + +I EI E + + Sbjct: 239 DEVAGGDNSPTSERIKTVTYKYDAGLLDYVHHLNTAKRVEVIHDEIIDFDAE-DTDRKIS 297 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 VE A+ W + +Y NTI T EGGTHE G R ALT I +YA ++ ++ Sbjct: 298 VEIAMQWTTAYSESVHTYANTISTTEGGTHEEGFRAALTSLINRYARAKNILKEKDDNLT 357 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 +D+ ++SV + EP+F GQTKTKL + +A+ V++ + + + +L +P EA ++ Sbjct: 358 GEDIREGLTAVISVKLGEPQFEGQTKTKLGNTEARTFVQSIMNEKMNDWLDAHPNEAKEI 417 Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + I+ S+ RL RK RE R+ + +PGKL DC N E++IVEGDSAGGS Sbjct: 418 IRKAIQASQARLAARKAREATRRKGLLESGGMPGKLRDCQSNRPEECEIYIVEGDSAGGS 477 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 A + RN QA+LPLRGKILNV A +K +N ++ L+ A G + LRY K Sbjct: 478 AVRGRNPHIQAILPLRGKILNVERARLDKALSNAEVQALITAFGTGIGEDFDMSKLRYHK 537 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEH 596 +++M DADVDG HI +LLLT ++ M LIE H+FL PPL+RI + Y ++ Sbjct: 538 IVLMADADVDGQHICTLLLTLLFRYMRPLIEHGHVFLAQPPLYRIKWTNAEHDYVFSDKQ 597 Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + + E GK + I R+KGLGEM S+L +T MD RTLL+V + Sbjct: 598 RDDCIREGLAAGKRIPKDNGIQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLED----AA 653 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 654 AADEMFAILMGEDVESRRNFIQRNARDVRFLD 685 >gi|291558319|emb|CBL35436.1| DNA gyrase subunit B [Eubacterium siraeum V10Sc8a] Length = 686 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N Y A I+ILEGLE VR RPGMYIG T E LHHL E++DNA+DE +AGY Sbjct: 30 NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 89 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + V DNGRGIP HPK S ++ T LHAGGKF Y++SGGLHG Sbjct: 90 INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 148 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L +TV I Q+F G K +K GT++ F+PD IF Sbjct: 149 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 208 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F LL + +A+L+ +K S ++ + P++E + GG+ +Y++ Sbjct: 209 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 263 Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332 + R + ++ + +VE A + + S+ N I T +GGTHE Sbjct: 264 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 320 Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376 + AL + I + + + K + + + + + ++SV + E Sbjct: 321 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 380 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 EF GQTK KL + + + V + +Y ++P + + I R +K Sbjct: 381 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 440 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 E RK+ LPGKLADCS TE++IVEGDSAGGSAKQ R+R QA+LPL GK+ Sbjct: 441 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 500 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++K+ NN ++ +V+ALG + LRY +V++M DADVDG+HI +LLL Sbjct: 501 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 560 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ M LIE+ H++L PPLF++ +G K YA +E + + E K+++ R Sbjct: 561 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 620 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET MD RT+++V + + + LMG K + R +FI++ Sbjct: 621 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 676 Query: 677 RASFIDDVG 685 A + D+ Sbjct: 677 NARYAKDLD 685 >gi|255038730|ref|YP_003089351.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053] gi|254951486|gb|ACT96186.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053] Length = 651 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 368/649 (56%), Gaps = 20/649 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y A +I++LEGLE VR RP MYIG T K +HHL EV+DN++DE +AGY + I V++ Sbjct: 10 NSYSAENIQVLEGLEAVRKRPAMYIGDTGFKGVHHLIWEVVDNSIDEAMAGYCDTINVTV 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + N +TV DNGRGIP HPK NKS LE++LT LHAGGKFD TY++SGGLHGVG+S Sbjct: 70 EKNNSITVKDNGRGIPTGMHPK-ENKSALEVVLTVLHAGGKFDKDTYKVSGGLHGVGVSC 128 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V R+ IF Q+FS G PL P GT I F PD IF Sbjct: 129 VNALSIHLRAEVHREGKIFEQEFSEGKPLYPTRVIGDSEK-TGTIIHFLPDATIFTVT-E 186 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + + + +YL+ ++ +E E EEFY GL ++ R Sbjct: 187 YKYETIATRLRELSYLNKGIRITLEDKREEDENGQ-FRGEEFYSEVGLNEFVTYLDATRQ 245 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + E + +K VE A+ + E SY N I T EGGTH SG R ALTR Sbjct: 246 PLIPEPIHMENDKGVIP---VEVAMMYNTSYSENVFSYVNNINTIEGGTHVSGFRAALTR 302 Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +K YAE + K + I DD ++S+ + EP+F GQTKTKL + + V Sbjct: 303 TLKNYAEKSGILAKEKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTAAVSQ 362 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + ++YL ++P EA +++ VI ++ + V RK + LPGKL+DCS Sbjct: 363 VVAEMLENYLEEHPKEARVIIDKVILAAKARIAAKKAREMVQRKNILTGTGLPGKLSDCS 422 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + + EL++VEGDSAGG+AKQ RNR+ QA+LPLRGKILNV A KI N++I ++ Sbjct: 423 ETDPNVCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAQEYKIYENEEIKNMF 482 Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 A+G + + LRY K++IMTDAD+DG+HI +L+LTFF++ M LI+ ++ Sbjct: 483 TAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSHIRTLILTFFFRYMKILIDNGYI 542 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ + +G + Y E+ +++ + E + + + R+KGLGEM A QL ET Sbjct: 543 YIAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKEDSVNVQRYKGLGEMNAEQLWETT 602 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 M+ +R+L +V + S + + LMG + R FI++ A + Sbjct: 603 MNPERRSLKQVSVE----SAAEADHLFSMLMGDEVAPRRDFIEKNAKYA 647 >gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315] gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781] gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763] gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719] gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299] gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115] gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300] gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224] gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937] gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98] gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117] gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102] gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819] gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1] gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796] gi|54037243|sp|P66937|GYRB_STAAN RecName: Full=DNA gyrase subunit B gi|54041556|sp|P66936|GYRB_STAAM RecName: Full=DNA gyrase subunit B gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315] gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781] gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763] gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719] gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299] gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115] gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300] gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224] gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937] gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98] gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102] gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117] gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981] gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819] gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796] gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03] gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172] gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193] Length = 644 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175] gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175] Length = 645 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 253/656 (38%), Positives = 380/656 (57%), Gaps = 22/656 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + YDAS I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AG+A Sbjct: 5 NKAELAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEALAGFAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IE+ + + V D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLH Sbjct: 65 HIEIEITKENHIRVTDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS +L V V + I+ Q + RG L L+ +K GT + F PDP+I Sbjct: 124 GVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIIG-TTDKHGTSVYFVPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ +L + A+L+ +K + + P ++ F + GG+K+Y++ Sbjct: 183 FQETTVFEFDKLANRVRELAFLNKGLKLTITDFR-----PEEPVRKSFCYEGGIKSYVEH 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334 +++ ++ E + E+ G VE A+ + S+ N I T EGGTHESG+ Sbjct: 238 LNKSKQVLFEEPIYVEGEQDGIQ---VEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGM 294 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR I YA + + + +D+ ++S+ +P+F GQTKTKL + +A Sbjct: 295 KTALTRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEA 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + + FD +L++NP A K++E I S+ RL ++ RE +K+ + LPG Sbjct: 355 RTITDRLFSTHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N+ Sbjct: 415 KLADCSSNDPTISELFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKATLDKILANE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G + RY+K++IMTDADVDG+HI +LL+T FY+ M +E + Sbjct: 475 EIRSLFTAMGTGFGGDFDLSKARYQKLVIMTDADVDGSHIRTLLITLFYRYMRPAVEAGY 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++ QG Y +++ + L+E H K ++SR+KGLGEM A QL ET Sbjct: 535 IYIAQPPLYKLKQGKNEYYIQNDKELEAKLKELPAH--PKPQLSRYKGLGEMDAEQLWET 592 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 M+ R++L+V + + ++ LMG + + R +FI+ A +I +D+ Sbjct: 593 TMNPENRSMLQVSVED----AAEADQILDILMGDRVEPRREFIESNAKYINMEDLD 644 >gi|77464346|ref|YP_353850.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides 2.4.1] gi|77388764|gb|ABA79949.1| DNA topoisomerase II/DNA gyrase, subunit B [Rhodobacter sphaeroides 2.4.1] Length = 663 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A IEV L Sbjct: 23 ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGVG SV Sbjct: 83 HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGI P++ N+RGT ITF PDP+IF Sbjct: 143 VNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ARL+KM +SKAYL V+ W K P++ F+FPGGL YL +L S Sbjct: 202 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258 Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + F GK ++K G+VEWAI W + I SYCNT+ T EGGTHESG A+ Sbjct: 259 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +GI+ Y EL +N++A I DD++ ++SVFIREP+F GQTK +L + +A + VEN Sbjct: 319 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEASKLVEN 378 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A+RD FD++L N A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DCS Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A S K+ N +I DL Q Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 498 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG +++ ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+L PP Sbjct: 499 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+TQG K +Y D+ K+ + + GKGKI++ RFKGLGEM A LK+T M+ R Sbjct: 559 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662 >gi|196250913|ref|ZP_03149597.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16] gi|196209554|gb|EDY04329.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16] Length = 645 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 358/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N I V + Sbjct: 8 EYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+D GRG+PV H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSVTVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R I+ Q+F G + NK GT I F+PDP IF F Sbjct: 126 NALSEWLVVTIHRDGFIYRQRFENGGKPVTTLENIGTTNKTGTIIQFKPDPTIFSTTV-F 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + + A+L +K ++ +E F++ G++ ++ E + + Sbjct: 185 DYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYLNEEKDV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + E+ G VE+A + + E S+ N + T +GGTHE+G + A+TR Sbjct: 238 LHPVA-YFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454 + + ++L +NP + L++ I + R RK RE R RK + L GKL Sbjct: 354 AVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ Sbjct: 474 TIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533 Query: 575 ISPPLFRITQG--TKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL++I++G K YA +E ++I ++ + I R+KGLGEM A QL E Sbjct: 534 ALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGR----GYTIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635 >gi|304321475|ref|YP_003855118.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503] gi|303300377|gb|ADM09976.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis HTCC2503] Length = 665 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 353/657 (53%), Positives = 466/657 (70%), Gaps = 16/657 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y A I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A+ IEV Sbjct: 12 SGDYTAKDIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGHASRIEVH 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 LD G LTV DNGRGIP++ HPKF KS LE+I TTLH+GGKF N Y SGGLHGVGIS Sbjct: 72 LDAEGKLTVADNGRGIPIDKHPKFKTKSALEVIFTTLHSGGKFSNKAYATSGGLHGVGIS 131 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD+L V VAR ++ Q +++G+P S L K ++RGT +TF PDP+IFG A Sbjct: 132 VVNALSDDLVVEVARNRDLYRQTYAKGLPTSKLRKVGAAPSRRGTTVTFHPDPEIFGKGA 191 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ARL +M +SKAYL G V+ WSCD +A+ P+KE +F GGLK YL + Sbjct: 192 SFKPARLFRMARSKAYLFGGVEIRWSCDPSLLADDDPTPQKEVLHFAGGLKDYLTHVVGE 251 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAW----------CEENPEITSYCNTILTDEGGT 329 R ++ E+F GK EK+G H GTVEWAI W + SYCNT+ T EGGT Sbjct: 252 RPTVTGEVFAGKIEKEGGH-GTVEWAIVWGRAGFQTPAGQMADGFTNSYCNTVPTPEGGT 310 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE G+R AL+RG+K YAEL K+A +I ++D++ +A +LSVF+ PEF GQTK KL + Sbjct: 311 HEQGMRAALSRGLKAYAELAGQKKAANITAEDVLGTAGVLLSVFVSNPEFQGQTKDKLAT 370 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 +AQ+ E A+R FDH+L + +A +LLEWVI+R+E+R+RRRK++EV R +A++KLRL Sbjct: 371 AEAQKLTEAAIRPAFDHWLAGHKQQADQLLEWVIDRAEDRIRRRKEKEVQRASAMKKLRL 430 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ GTELF+VEGDSAGGSAKQAR R QA+LPLRGKILNVAS+ +KI Sbjct: 431 PGKLADCTAKDRTGTELFLVEGDSAGGSAKQARRRETQAILPLRGKILNVASSTKDKITQ 490 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N+++ D+ A+G S++ +DLRY+K++IMTDADVDGAHIA+LL+TFF+ M LI+ Sbjct: 491 NKEVTDIALAMGVGLGSRFELDDLRYDKIVIMTDADVDGAHIAALLITFFHISMPGLIQA 550 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 L++ PPL+R++QG K+VYA D+ ++ ++ K G K+++ RFKGLGEM A LK Sbjct: 551 GRLYMAQPPLYRLSQGGKTVYALDDADREAKIKAEFKSG-SKVDVGRFKGLGEMNAKDLK 609 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685 ET MD R L RV + D ++D + +++LMG A+ RF+FIQ+ A F+ DD+ Sbjct: 610 ETTMDPATRILARVRLTTDE--IEDINNLVDRLMGRNAEPRFRFIQDNAQFVTDDLD 664 >gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella multiformis DSM 16608] gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella multiformis DSM 16608] Length = 657 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 264/668 (39%), Positives = 383/668 (57%), Gaps = 28/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEVS++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 KNIEVSINEDNSVTVEDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + +K GTR F PD Sbjct: 121 HGVGVSCVNALSSHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDAG 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + AYL+ +K S + E E F+ GLK +++ Sbjct: 180 IFTTTV-FQWDIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ KTEK+ +E A+ + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 FRTALTRTLKAYADNDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + +YL ++P EA + VI + R+ RK RE RK + Sbjct: 355 GNSEVSGAVQQAVGEALSNYLEEHPNEAKLICNKVILAATARVAARKARESVQRKNVMSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI--SRFK 618 + M +IEQ HL++ +PPL++ T S Y + ++ +Q L+++ + I R+K Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|315499760|ref|YP_004088563.1| DNA topoisomerase iv, b subunit [Asticcacaulis excentricus CB 48] gi|315417772|gb|ADU14412.1| DNA topoisomerase IV, B subunit [Asticcacaulis excentricus CB 48] Length = 668 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 358/676 (52%), Positives = 478/676 (70%), Gaps = 16/676 (2%) Query: 16 SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75 K +PA + +A + Y AS+I +LEGLEPVR RPGMYIGGTDEKA+H Sbjct: 2 PTAKPAPAKAEPAKTSAPAPSALTA-EGYGASAIEVLEGLEPVRKRPGMYIGGTDEKAMH 60 Query: 76 HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135 HLF+EV+DNAMDE +AG+A I V LD G+L+V D+GRGIPV+ HPK+P KS LE+++T Sbjct: 61 HLFAEVLDNAMDEAVAGHAKAIWVELDAEGYLSVRDDGRGIPVDPHPKYPGKSALEVVMT 120 Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195 LH+GGKF YE SGGLHGVG+SVVNALS+ L VTV R + Q FSRG+ P+ + Sbjct: 121 VLHSGGKFSGKAYETSGGLHGVGVSVVNALSEHLEVTVWRDGFEWQQVFSRGLSQGPIRQ 180 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 + RGTR F+PD +IFG A F AR+ +M ++KAYL V+ W CD Sbjct: 181 VAPSKK-RGTRERFKPDEEIFGVGAHFKPARIYRMAKAKAYLFRGVQIHWKCDPSQI-SD 238 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----E 310 P +++FYFP GL YL +++ + ++IF+G+ E++G G VEWA+ W E Sbjct: 239 HTPAEDKFYFPNGLADYLAERVQETETV-TDIFSGRVERQGEA-GAVEWAVTWSGAGFGE 296 Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGIL 370 + SYCNTI T +GGTHE+GLR ALTR +K YAE+T +KR I ++D++ A ++ Sbjct: 297 FDGFTQSYCNTIPTPDGGTHEAGLRAALTRSLKTYAEMTGDKRGGIITAEDVVAQAGVVI 356 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SVFI+ PEF GQTK +L S +AQR VE AL DPFDH+L+ +P +A +LL++V+ER+E+RL Sbjct: 357 SVFIKNPEFQGQTKDRLSSSEAQRLVEKALADPFDHWLISSPKQADRLLQFVVERAEDRL 416 Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 ++RK +EV R +A RKLRLPGKLADC++ A+GTELFIVEGDSAGGSAKQARNR+ QA+L Sbjct: 417 KKRKDKEVQRASATRKLRLPGKLADCARQDANGTELFIVEGDSAGGSAKQARNRNTQAIL 476 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 PLRGKILN+ASA ++K ++NQ++ DL ALG + ++++E+DLRYE+++IMTDADVDGAH Sbjct: 477 PLRGKILNIASATADKAKSNQELSDLGLALGVQPGARFKEDDLRYERIVIMTDADVDGAH 536 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 IASLL+T+FY+ M +I HL+L PPL+RI+ GTK VYA D+ H+ +ILE K+ Sbjct: 537 IASLLITYFYRTMPSMIRNGHLYLAMPPLYRISHGTKIVYAKDDAHRLEILE--KEFKGK 594 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 K EI RFKGLGEM+ +QLKET MD RTL RV + + D +D + LMG K + R Sbjct: 595 KPEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTLP---ENESDIEDLVETLMGRKPELR 651 Query: 671 FKFIQERASFI-DDVG 685 FK+IQ+ A F+ DD+ Sbjct: 652 FKYIQQNAEFVGDDLD 667 >gi|227485761|ref|ZP_03916077.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] gi|227236316|gb|EEI86331.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] Length = 642 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 268/654 (40%), Positives = 393/654 (60%), Gaps = 23/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N + ++NYDA +IR+LEGLEPVR+RPGMYIG T + LHHL EV+DN++DE +AG + Sbjct: 7 KNMTENNNYDAGNIRVLEGLEPVRLRPGMYIGSTSSRGLHHLVYEVVDNSVDEALAGRCD 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V+++ + ++V D+G GIPV+ HP +KSTLE +LT LHAGGKFD+S Y++SGGLH Sbjct: 67 YIKVTINKDNVVSVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYKVSGGLH 125 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ L V R ++ +F+RG +E GT+ITF+PD +I Sbjct: 126 GVGVSVVNALSEYLIAEVKRDGHVYKMEFARGEVTKDIEVIGDTTE-TGTKITFKPDGEI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F+ + L + A+L+ V+ + ++E E F F GG+ ++ Sbjct: 185 FDTTI-FERSILENRFREMAFLNKGVEIRFEDERENFETS-------FKFEGGISEFVSF 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N+ I I ++G VE+A + + I SY N I T EGGTH SGL Sbjct: 237 LNRNKDPIMEMIPHFDGSQEGI---EVEFAFQYTDGYSENILSYANNIQTPEGGTHLSGL 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +LTR + YA ++ +D+ I+SV I +P+F GQTK+KL + + Sbjct: 294 RSSLTRSVNDYARKYNFIKDNEENLQGEDIREGITAIISVKISDPQFEGQTKSKLGNSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V++ + + +L +NP A +++ + R RK R+ +++ + LPG Sbjct: 354 RGVVDSYVSEHLTAFLEENPKPAKSIIDKALASRRAREAARKARDLTRKRSILDSATLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A +K+ N++ Sbjct: 414 KLADCQSTDISENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDKVLNSE 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +++ A G ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M DLI++ H Sbjct: 474 EIKNMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDEGH 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI+QG K Y + ++ K K ++E G +I+R+KGLGEM A QL ET Sbjct: 534 VYVALPPLYRISQGKKERYVYSDDEKDKYIKEL---GDATFKINRYKGLGEMNAEQLWET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD ++R LLRV ++ T D+ + LMG K + R FIQE A ++ D+ Sbjct: 591 TMDPDRRVLLRV---EEDLESTTTDDTFSLLMGEKVEPRRNFIQENAKYVTDID 641 >gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2] gi|87161454|ref|YP_492727.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948] gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30] gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3] gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160] gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139] gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765] gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427] gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19] gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH70] gi|59797750|sp|Q6GD85|GYRB_STAAS RecName: Full=DNA gyrase subunit B gi|59799585|sp|P0A0K7|GYRB_STAAW RecName: Full=DNA gyrase subunit B gi|59799586|sp|P0A0K8|GYRB_STAAU RecName: Full=DNA gyrase subunit B gi|93204588|sp|Q2FKQ1|GYRB_STAA3 RecName: Full=DNA gyrase subunit B gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus] gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus] gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2] gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948] gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3] gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30] gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139] gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765] gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160] gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19] gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133] gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH70] gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46] gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189] Length = 644 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|221640231|ref|YP_002526493.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides KD131] gi|221161012|gb|ACM01992.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides KD131] Length = 651 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 345/647 (53%), Positives = 449/647 (69%), Gaps = 10/647 (1%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A IEV L Sbjct: 11 ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 70 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGVG SV Sbjct: 71 HADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 130 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L V VAR ++ Q FSRGI P++ N+RGT ITF PDP+IF Sbjct: 131 VNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ARL+KM +SKAYL V+ W K P++ F+FPGGL YL +L S Sbjct: 190 FKPARLMKMVRSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 246 Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + F GK ++K G+VEWAI W + I SYCNT+ T EGGTHESG A+ Sbjct: 247 TYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 306 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +GI+ Y EL +N++A I DD++ ++SVFIREP+F GQTK +L + +A + VEN Sbjct: 307 LKGIRAYGELVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLATEEAAKLVEN 366 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A+RD FD++L N A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DCS Sbjct: 367 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 426 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A S K+ N +I DL Q Sbjct: 427 TARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQ 486 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG +++ ++LRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+L PP Sbjct: 487 ALGTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 546 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+TQG K +Y D+ K+ + + GKGKI++ RFKGLGEM A LK+T M+ R Sbjct: 547 LYRLTQGAKRLYVADDVEKELWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 605 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 606 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 650 >gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132] Length = 644 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQVLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876] gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635] gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101] gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809] gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus MN8] gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|59797755|sp|Q6GKU0|GYRB_STAAR RecName: Full=DNA gyrase subunit B gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876] gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635] gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20] gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101] gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809] gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus MN8] gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH60] gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus CGS00] gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131] Length = 644 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301] gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301] Length = 655 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 261/657 (39%), Positives = 379/657 (57%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLIYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIVLRADGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209 GGLHGVGISVVNALS+ + VTV R + F+Q+F +GI +K+ +K+GT I F Sbjct: 121 GGLHGVGISVVNALSEWVKVTVYRDGSEFNQRFEKGISKGELESKKQTGKSSKKGTTICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF F+ A L + AYL+G VK + ++ E E + + GG+ Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y++ + I EI ++K+ + + I + N I T +GGT Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ I ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ R+ RE V RK+ + Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + ++ E LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E + ++ F ++ I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENAN--YNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ +S +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSNLD 649 >gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus casseliflavus ATCC 12755] gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus casseliflavus ATCC 12755] Length = 649 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 383/653 (58%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A+ I+V Sbjct: 12 AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V ++ ++ Q++ RG + L+ ++ ++ GT + F PDP+IF + Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L + A+L+ +K +E P +E+++ GG+K+Y++ ++ Sbjct: 190 EFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++I + + E++G TVE ++ + + S+ N I T EGGTHE G + ALT Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA ++ + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ R ++ RE+ RK A+ LPGKLADC Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y E+ + +E K + R+KGLGEM QL ET Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPTVQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +LRV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 600 MDPDNRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046] Length = 641 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 372/656 (56%), Gaps = 21/656 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + +YDA I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY Sbjct: 2 ALEDNKVQQSYDADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V+++ + ++ V DNGRGIPV+ K +E+I+T LHAGGKF Y++SGG Sbjct: 62 CSGITVTIEQDNWIRVEDNGRGIPVDIQEKM-GMPAVEVIMTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS + V V R I F RG + L + + GT F+ D Sbjct: 121 LHGVGASVVNALSSQTIVQVHRDGKIHEIIFERGHTVQQLTVIGET-DHTGTTTRFKADS 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + ++ L + AYL+ + + ++ E+ E F+F GG++ Y+ Sbjct: 180 EIFKETTVYEYDILATRIRELAYLNRGISLTIADERTGQERS-----ETFHFEGGIREYV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + EN+ I + I EK+G TVE A+ + S+ N I T EGGTHES Sbjct: 235 EHINENKEAIHAPIDVL-GEKEGI---TVEIAMQYNAGFSSNIMSFANNINTYEGGTHES 290 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR I YA + + ++ +D+ I+S+ EP+F GQTKTKL + Sbjct: 291 GFKTALTRVINDYARKSNLIKESDANLTGEDVREGLTAIVSIKHPEPQFEGQTKTKLGNS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 + + D F+ +L++NP A +++E + ++ + RK+A+ L Sbjct: 351 EVSQITNALFSDGFERFLLENPSVARQVIEKGTMAARARVAAKKAREFTRRKSALEVSSL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E++IVEGDSAGGSAK R+R QA+LPLRGKILNV A ++I + Sbjct: 411 PGKLADCSSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILS 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G ++ E RY K++IMTDADVDGAHI LLLTFF++ M LIE Sbjct: 471 NAEIRAMITAFGTGIGEEFNLEKARYHKIVIMTDADVDGAHIRVLLLTFFFRFMRPLIEA 530 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+++ QG Y + ++ + IL K K + R+KGLGEM A+QL Sbjct: 531 GYVYAAKPPLYQVKQGKHVEYCYSDQELEDILNRLPK--LPKPNVQRYKGLGEMNATQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD RTL+RVE++ + + + LMG + R FI+E A ++ D+ Sbjct: 589 DTTMDPEHRTLIRVELDDAI----EADKIFDHLMGDEVAPRRDFIEENAVYVQDLD 640 >gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476] gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476] Length = 643 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 2 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 62 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 121 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 180 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 236 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 293 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 413 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 591 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642 >gi|254495273|ref|ZP_05108197.1| DNA gyrase subunit B [Polaribacter sp. MED152] gi|85819627|gb|EAQ40784.1| DNA gyrase subunit B [Polaribacter sp. MED152] Length = 645 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +YDASSI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE + GY + Sbjct: 2 SEEKKHSYDASSIQALEGMEHVRMRPSMYIGDVGIRGLHHLVYEVVDNSIDEAMGGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+++ + +T DNGRGIPV H K S L++++T + AGGKFD +Y++SGGLHG Sbjct: 62 IEVTINEDNSITTKDNGRGIPVGLHKK-EGVSALQVVMTKIGAGGKFDKDSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALSD L TV ++ I+ Q++ RG L P++ + GT +TF PD IF Sbjct: 121 VGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTFLPDKSIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L + AYL+ + + + ++ E F+ GL +++ Sbjct: 180 TQSTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEG-NFISETFHSNKGLPEFIEYL 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R + + + + + EK G VE A+ + + SY N I T EGGTH SG R Sbjct: 239 DSTREQLIANVISMEGEKNGIP---VEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFR 295 Query: 336 VALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LT +KKYA+ + + + DD I+SV + EP+F GQTKTKL + + Sbjct: 296 RGLTGTLKKYADESGLLKNVKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVT 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGK 452 V A+ + YL +NP +A +++ VI + R RK R++ ++ + + LPGK Sbjct: 356 SAVSQAVSEMLTDYLEENPNDAKTIVQKVILAATARHAARKARDMVQRKSVMSIGGLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DCS+ E+F+VEGDSAGG+AKQ R+R+ QA+LPLRGKILNV A K+ N++ Sbjct: 416 LSDCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I ++ ALG ++ L Y KV+IM DADVDG+HIA+L+LTFF++ M +++ Sbjct: 476 IKNMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTFFFRYMKEMV 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 EQ ++++ +PPL+ + +G K YA D++ + I ++ G + I R+KGLGEM A Q Sbjct: 536 EQGYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMG----GSVTIQRYKGLGEMNAEQ 591 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L +T M+ RTL +V I+ S + + LMG + R FI+ A + ++ Sbjct: 592 LWDTTMNPEFRTLRKVVID----SPTEADRVFSMLMGDEVPPRRDFIERNAKYA-NID 644 >gi|317054739|ref|YP_004103206.1| DNA gyrase subunit B [Ruminococcus albus 7] gi|315447008|gb|ADU20572.1| DNA gyrase, B subunit [Ruminococcus albus 7] Length = 662 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 256/672 (38%), Positives = 378/672 (56%), Gaps = 20/672 (2%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 K EI D+ + + S+NYD + I +LEGLEPVR+RPGMYIG T K LHHL E Sbjct: 3 NDNIKEVEIVDTESISQIDKSNNYDENQIEVLEGLEPVRVRPGMYIGSTGPKGLHHLVYE 62 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 ++DNA+DE +AGY I V + + VVDNGRGIP HPK S ++ T LHAG Sbjct: 63 IVDNAIDEALAGYCTEIIVDILPGDVIRVVDNGRGIPTGIHPK-EGISAATVVYTVLHAG 121 Query: 141 GKFDNSTYEISGG-LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GKF G LHGVG SVVNALS+ L +TV + Q+F RG PL+ + Sbjct: 122 GKFGGGGGYKVAGGLHGVGASVVNALSEYLELTVYDGKNVHFQRFDRGHYSEPLKIIGET 181 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 +K GT + F+PDP+IF + FD LLK + +A+L+ +K +S + P Sbjct: 182 -DKTGTEVKFKPDPEIFQETTTFDYEILLKRLREQAFLNAGIKIVFSDLR----NAEKPI 236 Query: 260 KEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316 E ++ GG++ +++ + R +S ++ + E A+ + + I Sbjct: 237 SEVLHYEGGIRQFVEHIHKTRGVEPLSEDVIYINGVEDDMF---AEIALQYNDTYNEIIL 293 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFI 374 S+ N I T +GG+HE + ALT+ + Y + + + +D I+SV + Sbjct: 294 SFANNIHTPDGGSHEMAFKSALTKILNDYGKAHNLIKDNDDALMGEDCREGLTAIVSVKL 353 Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 EF GQTK +L + + + V+ L++ +YL +NP A + + I+ + R ++ Sbjct: 354 TNCEFEGQTKGRLGNPEVRPFVDKMLKEKLRNYLEENPAVAKAIFDKSIQAQKAREAAKR 413 Query: 435 QRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493 RE RK+ + LPGKLADCS+ TE++IVEGDSAGGSAK+ R+R QA+LPL Sbjct: 414 ARELTRRKSVLESASLPGKLADCSERDMSMTEIYIVEGDSAGGSAKEGRDRRYQAILPLW 473 Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553 GK+LNV A +K+ N+++M +V ALG + LRY KVIIM DADVDG+HI + Sbjct: 474 GKMLNVEKARIDKVYGNEKLMPVVTALGTSIGDDFDISKLRYGKVIIMADADVDGSHIRT 533 Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 LLLTFF++ M LIE++H+F+ PPLF++ + K YA +E + K ++E GK K+ Sbjct: 534 LLLTFFFRFMRPLIEEEHVFIAQPPLFKVERNKKVRYAFTDEERDKYIDELSDGGKLKVA 593 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 + R+KGLGEM QL ET MD +RT+++V + + + LMG K R +F Sbjct: 594 VQRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVK----ADEIFTILMGDKVGPRKEF 649 Query: 674 IQERASFIDDVG 685 I++ A ++ D+ Sbjct: 650 IEKNAEYVKDLD 661 >gi|261415262|ref|YP_003248945.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371718|gb|ACX74463.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 646 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 250/652 (38%), Positives = 374/652 (57%), Gaps = 19/652 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + A +Y SSI +LEGLE VR+RP MYIG TD + LHHL EV+DN++DE +AG+ N I Sbjct: 9 KKAEADYSGSSITVLEGLEAVRVRPAMYIGSTDIRGLHHLVWEVVDNSVDEALAGFCNHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 E+S+ + V DNGRGIP + HPK T+++++T LHAGGKF+NS+Y++S GLHGV Sbjct: 69 EISILPGNGIRVTDNGRGIPTDIHPK-EKVGTIQVVMTKLHAGGKFNNSSYKVSAGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS++L VTV R + Q+F+RG+P P + GT + F PD IF Sbjct: 128 GVSCVNALSNKLIVTVRRNGRVVRQEFARGVPCGPQVDIGESDGTTGTSVEFYPDDTIFS 187 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + L + A+L ++ + +++ K + + F FPGG+ +++ Sbjct: 188 ETV-YVYDTLATRFRELAFLMSGLRLTLTDERDPEHK----QTDTFCFPGGVSEFVRYVD 242 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E+R+ + +E + +E A+ + + S+ N + T +GGTH +G + Sbjct: 243 EHRTPLFAEPIHLVL---PDGQYPLEVAMWYNDGYQENFFSFVNNVNTYDGGTHVTGFKT 299 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 ALTR I K+A+ K+ I SDD+ ++++ + +P+F GQTK KL + + Sbjct: 300 ALTRVISKFAQDMPKGKKEAQITSDDIREGLTAVIAIKVSQPQFEGQTKRKLGNSEIAGY 359 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V +A + Y +NP +L+ V + R + R RK + LPGKLA Sbjct: 360 VASAFGAKLEEYFQENPAAVKIILDKVYNAAVAREAAHRARTLARRKNVLESGGLPGKLA 419 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E+FIVEGDSAGGSAK R+R QA+LP+RGKILNV A ++ + ++I Sbjct: 420 DCSSRDPKECEMFIVEGDSAGGSAKMGRSREFQAILPIRGKILNVEKASLHRVLDTEEIQ 479 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +LV A+G ++++ E LRY+K+IIMTDADVDG+HI +LLLTFF++ M LI+ H+FL Sbjct: 480 NLVNAIGTGIGTEFKIEKLRYDKIIIMTDADVDGSHIQTLLLTFFFRYMRPLIDAGHIFL 539 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ G K Y DE K K++ E K + I+RFKGLGEM QL +T M+ Sbjct: 540 AMPPLYKLKIGQKERYLFDENEKDKVMAEI--EDKKNVAITRFKGLGEMSPEQLNDTTMN 597 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-SFIDDVG 685 R L + + + + LMG + R KFI+ A ++D+ Sbjct: 598 PKTRFLKQCHVEDSV----LADQIFSMLMGEDVEPRRKFIETNAYKVLNDLD 645 >gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252] Length = 643 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 2 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 62 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 121 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 180 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 235 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 236 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 293 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 352 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 353 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 412 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 413 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 472 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 473 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 532 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 533 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 591 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 642 >gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus italicus DSM 15952] gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus italicus DSM 15952] Length = 649 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 247/653 (37%), Positives = 374/653 (57%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFATKIEVV 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 VEKDNSITVTDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V ++ ++ Q++ RG +S L + ++ GT + F PDP+IF + Sbjct: 131 VVNALSTTLDVKVFKEGKVYFQEYHRGAVVSDLTIIGET-DRHGTEVHFVPDPEIFRETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L + A+L+ + ++ E F+F GG+K+Y++ + Sbjct: 190 TFEFEKLATRVRELAFLNRGLHISIEDKRK-----EEAEVRAFHFEGGIKSYVEHLNATK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +++ E + ++ +VE ++ + + S+ N I T EGGTHESG + ALT Sbjct: 245 TVLFPEPIYLEGNQQDI---SVEVSMQYTDGYHTNLLSFANNIHTYEGGTHESGFKTALT 301 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + R ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 302 RVINDYARKQKLMRESDENLSGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ RL ++ RE RK A+ LPGKLADC Sbjct: 362 RLFSEHFAKFLMENPTVGRQIVEKGLLASKARLAAKRAREVTRRKGALEISSLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSREADKCELFIVEGDSAGGSAKQGRDREFQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y E+ ++I+ K + R+KGLGEM QL ET Sbjct: 542 PPLYGVKQGKNITYVQPGKQAEDELKQIVSSLPAS--PKPNVQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +L+V ++ + + LMG + + R FI+E A ++ ++ Sbjct: 600 MDPENRMMLQVSVDDAI----EADQVFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|123969376|ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus marinus str. AS9601] gi|123199486|gb|ABM71127.1| DNA gyrase, subunit B [Prochlorococcus marinus str. AS9601] Length = 655 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 259/657 (39%), Positives = 378/657 (57%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S++Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEDKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIVLRADGSAFISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209 GGLHGVGISVVNALS+ ++VTV R + F+Q+F +G+ +K+ K+GT I F Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSKGELQAKKQTGKPFKKGTSICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF F+ A L + AYL+G VK + ++ E E + + GG+ Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKE-EIYLYQGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y++ + I EI ++K+ + + I + N I T +GGT Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ I ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + Y+ NP +LE I+ R+ RE V RK+ + Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPAILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E++IVEGDSAGGSAKQ R+R+ QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + ++ E LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ +++ PPL+++ +G Y ++E + ++ F ++ I RFKGLGEM+ Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENAN--YNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ + +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSGNLD 649 >gi|170742474|ref|YP_001771129.1| DNA topoisomerase IV subunit B [Methylobacterium sp. 4-46] gi|168196748|gb|ACA18695.1| DNA topoisomerase IV, B subunit [Methylobacterium sp. 4-46] Length = 682 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 395/690 (57%), Positives = 512/690 (74%), Gaps = 14/690 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D + DLF+ P ++ + + + P A + +A YDAS+I +LEGLEPVR Sbjct: 1 MSDPARDLFA---PGAKPAPGDPESGAKRPRPVAVPSPAAEAGYDASAIEVLEGLEPVRR 57 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A IEV L+ G L+V DNGRGIPV+ Sbjct: 58 RPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHATFIEVELEEGGILSVTDNGRGIPVDP 117 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP +S LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALSD L V VAR T++ Sbjct: 118 HPKFPGRSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDRLEVEVARNQTLY 177 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG+P LE+ +V+N+RGT++ F PDP+IFG FD RL KM +SKAYL G Sbjct: 178 RQHFSRGVPQGGLEQVGRVQNRRGTKVRFHPDPQIFGA-LAFDPRRLFKMARSKAYLFGG 236 Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + E G+P + FP GL+ YL +++ + L++ +FTGK + G+H Sbjct: 237 VEIRWRCAPALVEGIEGVPAEAVHRFPAGLRDYLAQEIDGKELVTDALFTGKVTRPGSH- 295 Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWA+AW ++ +SYCNT+ T EGGTHESGLR+AL R ++ +AE KR ++ Sbjct: 296 GSLEWAVAWLTHDDGFSSSYCNTVPTPEGGTHESGLRIALLRALRDHAERVGQVKRVQAV 355 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+M + +LSVFIREPEF GQTK KL +L+A R VE A+RD FDH+L +P +A K Sbjct: 356 TTDDVMATCASMLSVFIREPEFQGQTKDKLATLEASRIVEAAVRDAFDHWLAASPTQANK 415 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVI+R+EERLRRR+++EV RKTA RKLRLPGKLADCS+ A G+E+FIVEGDSAGGS Sbjct: 416 LLDWVIDRAEERLRRRQEKEVARKTATRKLRLPGKLADCSKAGAAGSEIFIVEGDSAGGS 475 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R++QAVLPLRGKILNVASA +K+ NQ + DL QALGC T S YR++DLRYEK Sbjct: 476 AKQARDRASQAVLPLRGKILNVASASRDKLGANQLLSDLTQALGCGTGSHYRDDDLRYEK 535 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M LIE+ HL+L PPL+R++QG K+ YA D+ HK Sbjct: 536 VIIMTDADVDGAHIASLLITFFYRQMPKLIEKGHLYLAVPPLYRLSQGAKTAYARDDRHK 595 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++++ K+G K+EI RFKGLGEM+ QLKET MD +KRTLLRVE+ + + T D Sbjct: 596 EQLIKTVFKNG--KVEIGRFKGLGEMMPGQLKETTMDPSKRTLLRVEVLD--EAREATGD 651 Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685 ++ +LMG K + RF FI ERA F D ++ Sbjct: 652 AVERLMGNKPEARFAFISERAVFADEAELD 681 >gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30] gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10] gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30] gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10] Length = 649 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 382/653 (58%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A+ I+V Sbjct: 12 AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V ++ ++ Q++ RG + L+ ++ ++ GT + F PDP+IF + Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L + A+L+ +K +E P +E+++ GG+K+Y++ ++ Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++I + + E++G TVE ++ + + S+ N I T EGGTHE G + ALT Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA ++ + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ R ++ RE+ RK A+ LPGKLADC Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y E+ + +E K + R+KGLGEM QL ET Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPTVQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +LRV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|218531372|ref|YP_002422188.1| DNA topoisomerase IV subunit B [Methylobacterium chloromethanicum CM4] gi|254562291|ref|YP_003069386.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens DM4] gi|218523675|gb|ACK84260.1| DNA topoisomerase IV, B subunit [Methylobacterium chloromethanicum CM4] gi|254269569|emb|CAX25539.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens DM4] Length = 685 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 396/690 (57%), Positives = 500/690 (72%), Gaps = 11/690 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D + DLF +E+ ++ + SPA A ++A YDAS+I +LEGLEPVR Sbjct: 1 MSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 60 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ Sbjct: 61 RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 120 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALSD L V VAR T++ Sbjct: 121 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 180 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG LE +V+N+RGTR+ F PD +IFG FD RL KM +SKAYL G Sbjct: 181 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 239 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + E E + FPGGL YL +E + L+ IF+GK K G+H Sbjct: 240 VEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 298 Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWA+AW ++ SYCNTI T EGGTHE+GLRVAL R ++++AE KR ++ Sbjct: 299 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 358 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+M + +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L +P +A K Sbjct: 359 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 418 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS G+E+FIVEGDSAGGS Sbjct: 419 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 478 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R+ QAVLPLRGKILNVASA +K+ NQ I DL ALGC T + +RE DLRY++ Sbjct: 479 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 538 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M LI++ HL+L PPL+RI+QG KS YA D+ K Sbjct: 539 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 598 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++I++ K+G K+EI RFKGLGEM+ +QLKET MD KRTLLRV I + + T D Sbjct: 599 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 654 Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685 ++ +LMG K + RF FI ERASF D ++ Sbjct: 655 TVERLMGNKPEARFAFITERASFADGTELD 684 >gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402] gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402] Length = 642 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 376/648 (58%), Gaps = 20/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D Y A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGYA+ +EV++ Sbjct: 10 DQYGADQIQVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEALAGYADHVEVTI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGLHGVG SV Sbjct: 70 EEDNWIKVTDNGRGIPVDIQKKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSV 128 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V + I+ Q + RG+P L+ + +K GT I F+ D +IF + Sbjct: 129 VNALSSTLEVYVHKDGKIYHQAYHRGVPAFDLKVIGET-DKTGTVIRFKADSEIFTETTE 187 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L K + A+L+ +K ++E E + +++ GG+K+Y++ +++ Sbjct: 188 YEYEILQKRIRELAFLNKGIKLEIKDEREQDEI----RHDVYHYEGGIKSYVELLNKSKE 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + E + VE +I + SY N I T EGGTHE G + ALTR Sbjct: 244 TLFPEPIYIHDNRDEI---EVEISIQYNNGYSTNLLSYANNIHTYEGGTHEDGFKRALTR 300 Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y + + + +D+ I+S+ P+F GQTKTKL + + ++ +N Sbjct: 301 VINSYGVKNKLIKEADEKLSGEDVREGITAIVSIKHGNPQFEGQTKTKLGNTEVRQITDN 360 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + F+ +L++NP A ++E I S RL +K RE RK+ + LPGKLADCS Sbjct: 361 LFAENFERFLLENPPIARIIVEKGIMASRARLAAKKAREVTRRKSGLEISSLPGKLADCS 420 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV A ++I N +I ++ Sbjct: 421 SKDPSISELYIVEGDSAGGSAKSGRDSKTQAILPLRGKILNVEKARLDRILGNNEIRSMI 480 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G ++ RY K++IMTDADVDGAHI +LLLTFFY+ M L+E ++++ P Sbjct: 481 TAMGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQP 540 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLF++ QG K Y ++E K+ +E K +++R+KGLGEM A QL ET M+ Sbjct: 541 PLFKVEQGKKKYYVYNERELDKLRKELPTT--PKWQLARYKGLGEMNADQLWETTMNPEH 598 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R++L+V ++ + + + LMG + R FI+E A + +V Sbjct: 599 RSMLQVTLSDAI----EADEVFEMLMGDVVEHRRTFIEENAEYA-NVD 641 >gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20] gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20] Length = 649 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 382/653 (58%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A+ I+V Sbjct: 12 AKAYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASSIQVI 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V ++ ++ Q++ RG + L+ ++ ++ GT + F PDP+IF + Sbjct: 131 VVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHFVPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L + A+L+ +K +E P +E+++ GG+K+Y++ ++ Sbjct: 190 VFNFDKLATRVRELAFLNRGLKISIEDKREEK-----PVLKEYHYDGGIKSYVEHLNASK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++I + + E++G TVE ++ + + S+ N I T EGGTHE G + ALT Sbjct: 245 TVIFPDPIYLEGEQQGI---TVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKTALT 301 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA ++ + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 302 RVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ R ++ RE+ RK A+ LPGKLADC Sbjct: 362 RLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y E+ + +E K + R+KGLGEM QL ET Sbjct: 542 PPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPAT--PKPSVQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +LRV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 600 MDPENRMMLRVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|261419951|ref|YP_003253633.1| DNA topoisomerase IV subunit B [Geobacillus sp. Y412MC61] gi|319766765|ref|YP_004132266.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52] gi|261376408|gb|ACX79151.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC61] gi|317111631|gb|ADU94123.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52] Length = 645 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 363/656 (55%), Gaps = 34/656 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + A+ Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N Sbjct: 2 AKRATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + +TV+D GRG+PV H K T E+ILT LHAGGKF Y+ SGGLHG Sbjct: 62 ILVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L VT+ R I+ Q+F G +K NK GT I F+PDP IF Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD L + + A+L +K ++ +E F++ G++ ++ Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E + ++ E+ G VE+A + + E S+ N + T +GGTHE+G + Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR +YA ++ ++ D+ ++SV I E +F GQTK KL + + Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448 A+ V+ + + ++L +NP + L++ I + R RK RE R RK + Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ A+G + + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527 Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL++I++ G + YA +E ++I+++ + I R+KGLGEM Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGR----GYTIQRYKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635 >gi|295401842|ref|ZP_06811806.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111016|ref|YP_003989332.1| DNA topoisomerase IV subunit beta [Geobacillus sp. Y4.1MC1] gi|294976096|gb|EFG51710.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216117|gb|ADP74721.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y4.1MC1] Length = 656 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 247/650 (38%), Positives = 360/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N I V + Sbjct: 8 EYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSVTVLDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R I+ Q+F G +K NK GT I F+PDP IF F Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFENGGKPVTTLEKIGTTNKTGTIIQFKPDPAIFSTTT-F 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K ++ + F++ G+K +++ E++ + Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDER-------TGMSDVFHYENGIKAFVEYLNEDKDV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + + + E+ G VE+A + + E S+ N + T +GGTHE+G + A+TR Sbjct: 238 LHPVV-YFEGEQNGI---EVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 294 FNEYARKNGLLKEKDKNLEGTDIREGLSAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + ++L +NP +T L++ I + R RK RE R RK L GKL Sbjct: 354 AIVSEHLTYFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ Sbjct: 474 TIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K + YA + ++I ++ K + R+KGLGEM A QL E Sbjct: 534 ALPPLYKVSKGSGKKEIVEYAWTDAQLKEITKKLGK----GYTVQRYKGLGEMNAEQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIEANVAF 635 >gi|328956387|ref|YP_004373773.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4] gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4] Length = 647 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 254/659 (38%), Positives = 384/659 (58%), Gaps = 20/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + Q + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE + Sbjct: 4 SEEIKSKQDRAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEAL 63 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A+ I + ++ + +TV+DNGRGIPV+ K + LE + T LHAGGKF Y++ Sbjct: 64 AGFADEINLIIEKDESITVIDNGRGIPVDIQAK-TGRPALETVFTVLHAGGKFGGGGYKV 122 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS L V V + I+ Q++++G + +E + +K GT + F Sbjct: 123 SGGLHGVGSSVVNALSITLDVYVHKDGKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFV 181 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF + F +L + A+L+ +K +E EK+ +++ GG+K Sbjct: 182 PDPEIFKETVEFHFDKLATRVRELAFLNKGLKITVEDKREGKEKFLE-----YHYEGGIK 236 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329 +Y++ EN++++ E + E++G T+E A+ + S+ N I T EGGT Sbjct: 237 SYVEFLNENKTVLYDEPIFLEGEQQGI---TLEVAMQHTDGYHNNLLSFANNIHTYEGGT 293 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G + ALTR I YA+ + + ++ +D+ +LS+ +P+F GQTKTKL Sbjct: 294 HEFGFKTALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + +A+ + FD +L++NP A +++E ++ +R + +K+ + Sbjct: 354 GNSEARTITDRLFSAHFDKFLMENPQVARQIVEKGLLAARARLAAKRAREVTRKKSGLEI 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 414 SNLPGKLADCSSKDPTISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDR 473 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I L A+G + + RY K++IMTDADVDGAHI +LLLT FY+ M + Sbjct: 474 ILANEEIRSLFTAMGTGFGNDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPV 533 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ QG K VY EE L+E K I R+KGLGEM A Sbjct: 534 VEAGYVYIAQPPLYQVRQGKKMVYLDSEEELDNYLKEIPLS--PKPVIQRYKGLGEMDAE 591 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R +L+V ++ + + K LMG + + R FI+E A ++ ++ Sbjct: 592 QLWETTMNPENRRMLQVTVDDAIEADKSCD----MLMGDRVEPRRLFIEENARYVQNLD 646 >gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453] gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453] Length = 634 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 264/647 (40%), Positives = 381/647 (58%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD + I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AG + IE+ + Sbjct: 5 TYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIEIIVH 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIPV + K KSTLE+++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 65 EDNSVTVIDNGRGIPVGENAKL-KKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGVSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R I+ Q++ RG+P ++ ++ GT +TF PDP+IF + + Sbjct: 124 NALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGD-SDEHGTTVTFLPDPEIFTETTVY 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + LL + A+L+ + + ++ + F + GG+ Y++ E + Sbjct: 183 EYTTLLTRIRELAFLNKGIALTLTDER-------TGASDFFKYEGGIIEYVKFLNEKKEA 235 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + VE ++ + + I S+ N I T EGGTHESG + ALTR Sbjct: 236 LHEDPIYVEGSRDNIQ---VEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 292 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA T + + DD+ I+SV + EP+F GQTKTKL + + + VE+ Sbjct: 293 INDYARKTGMIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 352 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + +L +NP + ++LE ++ S R RK R RK+A+ LPGKLADCS Sbjct: 353 FAEKLQEFLQENPSVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 412 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A ++I +N +I ++ Sbjct: 413 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 472 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E ++++ PP Sbjct: 473 ALGTGIAEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPP 532 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LF++ + YA E+ + +I++EF ++ KI + R+KGLGEM A QL ET MD R Sbjct: 533 LFKVERNKVIRYAGSEKERDEIIKEFGEN--VKINVQRYKGLGEMNAGQLWETTMDPESR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T+L+V I + + LMG + R FIQE A + ++ Sbjct: 591 TMLQVTIEDAI----LADTLFDTLMGDNVEPRRDFIQEHAKTVRNLD 633 >gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424] Length = 644 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|91215255|ref|ZP_01252227.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755] gi|91186860|gb|EAS73231.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755] Length = 655 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 258/661 (39%), Positives = 393/661 (59%), Gaps = 24/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +NY A SI+ LEG+E VRMRP MYIG E+ LHHL EV+DN++DE + GY Sbjct: 10 MSEEVKKNNYSADSIQALEGMEHVRMRPSMYIGDVGERGLHHLVYEVVDNSIDEAMGGYC 69 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I++ ++ +G +T +DNGRGIP++ H K S LE+++T + AGGKFD +Y++SGGL Sbjct: 70 DKIDLVINEDGSVTTLDNGRGIPIDLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGL 128 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS +LH V + ++ Q++ RG + P++ +GT ITF+PD + Sbjct: 129 HGVGVSVVNALSVKLHARVFKDGKVWEQEYERGKAIYPVKPTGDT-EHKGTEITFKPDSE 187 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F L K + +YL+ ++ ++ + ++EFY GLK +++ Sbjct: 188 IFQESVEFKYETLAKRLRELSYLNKGIRISIIDKRQTNDDG-EYRQDEFYSEEGLKEFIR 246 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 +NR I +++ + ++EK VE A+ + E Y N I T EGGTH SG Sbjct: 247 FIDQNREPIITDVISMESEKNNIP---VEVAMVYNNSYSENLHSYVNNINTHEGGTHLSG 303 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA+ + K I DD I+SV + P+F GQTKTKL + + Sbjct: 304 FRRGLTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFEGQTKTKLGNRE 363 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 V A+ + + YL +NP +A +++ V+ ++ R +K RE+ RKT + LP Sbjct: 364 LTSAVSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQRKTVMSGGGLP 423 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS+ E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A ++ N Sbjct: 424 GKLSDCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMQHRVFEN 483 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG ++ + LRY KVIIM DADVDG+HIA+L+LTFF++ M + Sbjct: 484 EEIKNIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATLILTFFFRYMKE 543 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE H+++ +PPL+ I +G+K YA +E+ + +I+ E+ K + + R+KGLGEM A Sbjct: 544 LIEASHIYIATPPLYLIKKGSKKRYAWNEKERNEIVNEY----KTSVSVQRYKGLGEMNA 599 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ R L RV I + + + LMG + R +FI++ A + ++ Sbjct: 600 IQLWDTTMNPENRILRRVTIVD----MAEADRIFSMLMGDEVPPRREFIEQNAVYA-NID 654 Query: 686 T 686 Sbjct: 655 A 655 >gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27] gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27] Length = 645 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 23/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 NY A +I++LEGL+ VR RPGMYIG T + LHHL EV+DN++DE +AGYA IEV Sbjct: 14 PEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSARGLHHLVYEVVDNSVDEALAGYATHIEV 73 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S++ + +TVVD+GRGIP H S +E++L LHAGGKF Y++SGGLHGVGI Sbjct: 74 SINPDNSVTVVDDGRGIPTGMHE--SGMSAVELVLMKLHAGGKFGGGGYKVSGGLHGVGI 131 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ V V++ + F+RG S L + K GT + F+PD +IF Sbjct: 132 SVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAEG-TGTTVIFKPDAEIFETT 190 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L Q A+L+ ++ S + P E F++ GGL +++ EN Sbjct: 191 V-FSFDTLKMRLQELAFLNKGLRITLSDLR-----LEEPRVESFHYEGGLVSFITFLNEN 244 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + I+ + + K V+ A+ + + E S+ N I T +GGTH SG R AL Sbjct: 245 KEAINPTVINIENTKDDV---VVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAAL 301 Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + + ++ +D+ ++SV + EP+F GQTKTKL + + + Sbjct: 302 TRTLNDYGRKSGLIKESESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGIT 361 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + + ++P +A K++E + R+ + RK A+ LPGKLAD Sbjct: 362 DVIVTEGLKTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLAD 421 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ TE+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI N +I Sbjct: 422 CSEKDTSMTEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRS 481 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E+ H+++ Sbjct: 482 MITAFGTGIGDEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIA 541 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I +G Y + + L+E + G I R+KGLGEM QL ET M+ Sbjct: 542 QPPLYQIKKGKSHWYVYSDAELTAKLDEVGRDGT---TIQRYKGLGEMNPEQLWETTMNP 598 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT+L+V + + + LMG K + R KFI++ A ++ ++ Sbjct: 599 DNRTILQVSLEDSI----EADKIFTVLMGDKVEPRRKFIEDNAKYVRNLD 644 >gi|167751440|ref|ZP_02423567.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702] gi|167655686|gb|EDR99815.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702] Length = 692 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N Y A I+ILEGLE VR RPGMYIG T E LHHL E++DNA+DE +AGY Sbjct: 36 NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 95 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + V DNGRGIP HPK S ++ T LHAGGKF Y++SGGLHG Sbjct: 96 INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L +TV I Q+F G K +K GT++ F+PD IF Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 214 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F LL + +A+L+ +K S ++ + P++E + GG+ +Y++ Sbjct: 215 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 269 Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332 + R + ++ + +VE A + + S+ N I T +GGTHE Sbjct: 270 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 326 Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376 + AL + I + + + K + + + + + ++SV + E Sbjct: 327 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 386 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 EF GQTK KL + + + V + +Y ++P + + I R +K Sbjct: 387 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 446 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 E RK+ LPGKLADCS TE++IVEGDSAGGSAKQ R+R QA+LPL GK+ Sbjct: 447 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 506 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++K+ NN ++ +V+ALG + LRY +V++M DADVDG+HI +LLL Sbjct: 507 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 566 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ M LIE+ H++L PPLF++ +G K YA +E + + E K+++ R Sbjct: 567 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 626 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET MD RT+++V + + + LMG K + R +FI++ Sbjct: 627 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 682 Query: 677 RASFIDDVG 685 A + D+ Sbjct: 683 NARYAKDLD 691 >gi|297530088|ref|YP_003671363.1| DNA topoisomerase IV subunit beta [Geobacillus sp. C56-T3] gi|297253340|gb|ADI26786.1| DNA topoisomerase IV, B subunit [Geobacillus sp. C56-T3] Length = 645 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 362/656 (55%), Gaps = 34/656 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + A+ Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N Sbjct: 2 AKRATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + +TV+D GRG+PV H K T E+ILT LHAGGKF Y+ SGGLHG Sbjct: 62 ILVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L VT+ R I+ Q+F G +K NK GT I F+PDP IF Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD L + + A+L +K ++ +E F++ G++ ++ Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E + ++ E+ G VE+A + + E S+ N + T +GGTHE+G + Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR +YA ++ ++ D+ ++SV I E +F GQTK KL + + Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448 A+ V+ + + ++L +NP + L++ I + R RK RE R RK + Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ A+G + + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527 Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL++I++ G + YA +E ++I ++ + I R+KGLGEM Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGR----GYTIQRYKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635 >gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11] Length = 644 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEYRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845] gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845] Length = 657 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 262/668 (39%), Positives = 383/668 (57%), Gaps = 28/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENPENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 QNIEVTINEDNSITVEDDGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + +K GTR F PDP+ Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDPE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + A + + + AYL+ +K S + E E F+ GLK +++ Sbjct: 180 IFTTTV-YQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ KTEK+ +E A+ + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 FRAALTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + YL ++P EA + VI + R+ RK RE RK + Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 + M +IEQ HL++ +PPL++ T + Y + E+ +Q ++++ I R+K Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVNEYCYTEQQRQAFIDKYANGAEDAKAIHTQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|312888910|ref|ZP_07748472.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603] gi|311298651|gb|EFQ75758.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603] Length = 652 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 258/657 (39%), Positives = 375/657 (57%), Gaps = 20/657 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + NY A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AG+ Sbjct: 2 SEEKEDKSNYSADNIQVLEGLEAVRKRPSMYIGDTGVKGLHHLVYEVVDNSIDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V + +TV+DNGRGIP + K KS LEI++T LHAGGKFD TY++SGGL Sbjct: 62 DDIKVFIHKGNSITVIDNGRGIPTGINTK-EQKSALEIVMTVLHAGGKFDKDTYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R+ IF+Q++ +G P+ +++ V + GT TF+PDP+ Sbjct: 121 HGVGVSCVNALSTHMKTLVYREGKIFTQEYEKGKPIFEVKEIG-VSDHTGTTQTFQPDPE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + A+L+ ++ + ++E+ E +EFY GGL+ +++ Sbjct: 180 IFTLTTEYKFETLASRLRELAFLNKGIRLSLTDEREVKEDG-TFVCDEFYSEGGLREFVK 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 R I E K G VE A + + E SY N I T EGGTH SG Sbjct: 239 YLDGTRVSIIPEPIYLDGIKNGVP---VELAFQYNDTYSENVHSYVNNINTIEGGTHVSG 295 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +K YA+ + I I DD I+SV ++EP+F GQTK+KL + + Sbjct: 296 FRRGLTRTLKAYADKEGLLKNNKIEITGDDFREGLTAIISVKVQEPQFEGQTKSKLGNNE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + ++L +NP EA ++ V I R+ + V RK + LP Sbjct: 356 VIGAVDQAVGEILGNFLEENPKEAKLIVGKVLIAAQARAAARKAREMVQRKNVMGGSGLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ + EL++VEGDSAGG+AK RNR QA+LPLRGKILNV A KI N Sbjct: 416 GKLADCANSDPAVCELYLVEGDSAGGTAKMGRNRDYQAILPLRGKILNVEKAMEHKIYEN 475 Query: 511 QQIMDLVQALGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG + + LRY K++IMTDADVDG+HI +L+LTFF++ M + Sbjct: 476 EEIKNMFTALGVSIGTAEDNKALNLDKLRYHKIVIMTDADVDGSHITTLILTFFFRYMKE 535 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 L+E ++++ SPPL+ + +G + Y E+ ++ ++ K GK + R+KGLGEM Sbjct: 536 LVEYGYVYIASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGEMN 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 A QL +T M+ RTL R I+ + + LMG + R +FI++ A + Sbjct: 596 AIQLWDTTMNPETRTLRRATIDNAAEC----DHTFSMLMGDEVAPRREFIEKNAKYA 648 >gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708] gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708] Length = 645 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 362/651 (55%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ +EV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSVDEALAGHCTHVEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIPV+ HPK KS LE +LT LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INADGSVTVTDDGRGIPVDIHPK-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R N Q++ R P++ L+ K + GT ITF+PD +IF Sbjct: 121 VVNALSEFVEVTVWRDNKEHLQRYERSFPVTELQVKPYKEPRTGTSITFKPDTQIFTISI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+ VK ++ + K P E + + GG+K Y+ + Sbjct: 181 EFDYITLSGRLRELAYLNAGVKIIFTDHRLELLKSDTPRIEIYEYKGGIKEYVAYMNREK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI + E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEIIYVQGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ + + ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TLNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +L+ I+ + R RE V RK+ + LPGKLADCS Sbjct: 360 FVGEVLTEYLEFHPSIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N ++ L+ Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479 Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY +++IMTDADVDGAHI +LLLTFFY+ LIEQ +++ Sbjct: 480 TALGLGVKGEEFDSAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y + E Q+ + K I RFKGLGEM+ QL T M+ Sbjct: 540 PPLYKVERGKNHEYCYSERELQQHIATLPT--KANYNIQRFKGLGEMMPEQLWTTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 R + +VEI + LMG + R +FI+ S + D+ Sbjct: 598 TRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLD 644 >gi|331004661|ref|ZP_08328123.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167] gi|330409588|gb|EGG89028.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167] Length = 637 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 374/650 (57%), Gaps = 20/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S YDAS I+ILEGLE VR+RPGMYIG + LHHL E++DN++DE +AG+ I+V Sbjct: 2 STEYDASQIQILEGLEAVRVRPGMYIGSISSRGLHHLVYEIVDNSVDEALAGFCTEIKVK 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV DNGRGIPV+ K K LE++ T LHAGGKF Y+ SGGLHGVG S Sbjct: 62 INEDNSITVRDNGRGIPVDIQQKA-GKPALEVVFTILHAGGKFGGGGYKTSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS L V V + I+ +F +G + ++ + + GT ++F PD IF + Sbjct: 121 VVNALSTWLDVKVYKDCKIYHMRFEKGKVVEDIKVIGECSPEESGTEVSFLPDAGIFEET 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + A+L+ +K + + F++ GG+K ++ ++ Sbjct: 181 V-YDFDILKVRLRETAFLTKALKITLIDKR------AEKREMSFHYEGGIKEFVTYLNKS 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 +S I ++ + K+ VE A+ + I ++ N I T EGGTH SG + AL Sbjct: 234 KSPIYEDVIYCEGIKEKV---VVEVAMQHNDTYTESIYTFVNNINTPEGGTHLSGFKNAL 290 Query: 339 TRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ +YA + + ++ +D+ V I+SV I++P+F GQTK KL + +AQ V Sbjct: 291 TKTFNEYARNNKLLKENEENLSGEDIREGLVAIISVKIQDPQFEGQTKQKLGNSEAQTAV 350 Query: 397 ENALRDPFDHYLVQNPIEAT-KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + ++L QNP A + + + R+ + RK+A+ + LPGKLAD Sbjct: 351 NAVVSEQLTYFLEQNPGVAKLISEKAITAQRARAAARKARDLTRRKSALDGMSLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E+FIVEGDSAGGSAK AR R QA+LPLRGKILNV A +KI +N +I Sbjct: 411 CSSKNPEECEIFIVEGDSAGGSAKSARKRDTQAILPLRGKILNVEKARLDKIYSNAEIKA 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G + + LRY K+IIMTDADVDGAHI +L+LTF Y+ M +LI++ H++L Sbjct: 471 MITAFGTGIQKDFDISKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + K YA+ +E IL+E + K I R+KGLGEM A QL ET MD Sbjct: 531 QPPLYKLEKNKKVWYAYSDEELDNILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R L +V ++ + L +T + N LMG + R +FI+ A ++ ++ Sbjct: 589 ERRVLKKVVLDDSM--LSETDITFNTLMGDQVAPRREFIEANAKYVSNLD 636 >gi|288800604|ref|ZP_06406062.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332817|gb|EFC71297.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 657 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 259/669 (38%), Positives = 388/669 (57%), Gaps = 30/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 SENQNIENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDIEVTINEDNSITVQDNGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL ++ + N RGTR F PDP Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEQGKPLYSVKVVGET-NLRGTRQQFWPDPS 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + + + AYL+ V+ + + E +EEFY GLK + + Sbjct: 180 IFTTTL-YKWDIISRRMRELAYLNAGVRITLTDLRLDEEGKI--RREEFYAQDGLKAFAR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK +E A+ + + I SY N I T EGGTH +G Sbjct: 237 YIDRHRTHLFDDVIYLKTEKNNVP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R+ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRMALTRTLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + V+ A+ + YL ++P EA + + VI + R+ RK RE ++ + Sbjct: 354 GNSEVSGAVQQAVGEALADYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMTG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV K Sbjct: 414 GGLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYCQAILPLRGKILNVEKVMWHK 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + ++ +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFESESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617 + M +I++ HL++ +PPL+ + + + Y + E+ +Q ++ K I + R+ Sbjct: 534 RFMPKVIQEGHLYIATPPLYLCSYKNKEKEYCYTEQQRQAFIDRHTEGKDDSKSIHVQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L +V I + + + + LMG + R +FI++ Sbjct: 594 KGLGEMNPEQLWETTMNPQTRLLKQVTIE----NAAEADEIFSMLMGDDVEPRREFIEQN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398] Length = 644 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 378/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GDIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|78185902|ref|YP_373945.1| DNA gyrase, B subunit [Chlorobium luteolum DSM 273] gi|78165804|gb|ABB22902.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273] Length = 644 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 264/655 (40%), Positives = 377/655 (57%), Gaps = 25/655 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q+ NY A++I++L+G+ VRMRP MYIG + LHHL E++DN++DE + GY + I Sbjct: 7 QTPQSNYGATNIQVLDGIAHVRMRPAMYIGDIHSRGLHHLIYEIVDNSIDETLGGYNDYI 66 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 VSL+ +G +TV+D+GRGIPV+ HP KS LE+++T + AGGKFD Y++SGGLHGV Sbjct: 67 FVSLNPDGSVTVIDHGRGIPVDIHP-DKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGV 125 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R + Q++ RG+P + +++ + T+ TF PD +IF Sbjct: 126 GASVVNALSEWCEVEVYRDGKAWFQRYHRGVPEADVKEIGTTTERG-TKTTFMPDSEIFK 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ++ + A+L+ +K E+E F+F GGLK ++ Sbjct: 185 V-TEFRKDIIIDRMRELAFLNSNLKIVVQD--------IEGEQETFHFEGGLKEFVLFTD 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ENR + E EK GT VE A+ + + + SY N I T EGGTH +G R Sbjct: 236 ENRLNLIKEPIYIYGEKDGTI---VEIALEYNDSYQENVFSYVNNINTHEGGTHVTGFRK 292 Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + YA+ + + + DD ++SV + EP+F GQTKTKL + + Q Sbjct: 293 ALTRTLNAYAQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQS 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE+ L + + NP ++E V + R RK +E RK+ + LPGKL Sbjct: 353 IVESVLNEQLAEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A K+ N++I Sbjct: 413 ADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEI 472 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE + Sbjct: 473 KTIILALGTNFGEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKV 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ + G + YA D++ + I + KK GK + I R+KGLGEM QL Sbjct: 533 YIAQPPLYLVKSGKEQQYAWDDDERNSISDSMKKMQKGKANVHIQRYKGLGEMNPEQLWG 592 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD R+LL+V + + + + LMG K + R +FI++ A ++ + Sbjct: 593 TTMDPEHRSLLQVSVENAM----EADKVFSTLMGDKVEPRREFIEKNARYVRRLD 643 >gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122] gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122] Length = 644 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGDDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ + + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSKL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|16126217|ref|NP_420781.1| DNA topoisomerase IV subunit B [Caulobacter crescentus CB15] gi|221234989|ref|YP_002517425.1| DNA topoisomerase IV subunit B [Caulobacter crescentus NA1000] gi|13638361|sp|O54479|PARE_CAUCR RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|13423439|gb|AAK23949.1| topoisomerase IV, subunit B [Caulobacter crescentus CB15] gi|220964161|gb|ACL95517.1| topoisomerase IV subunit B [Caulobacter crescentus NA1000] Length = 695 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 374/690 (54%), Positives = 471/690 (68%), Gaps = 17/690 (2%) Query: 5 SIDLFSTLPPQSQGSSEKLK---KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61 D + +P +S + + IP P SA Y A+ I +LEGLEPVR R Sbjct: 13 DDDALAPVPAAPFKASVEPRVEPTPRPIPPPPPSKTASAPGEYSAADIEVLEGLEPVRKR 72 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A IEV LD +GFL+V D+GRG+PV+ H Sbjct: 73 PGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLDADGFLSVKDDGRGMPVDPH 132 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 PK+P KS LE+I+T LHAGGKF YE SGGLHGVG SVVNALS+ + VTV R Sbjct: 133 PKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVVNALSERVEVTVWRDGFEHL 192 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 Q FSRG PL P+++ + +GT + F+PD +IFG+ F ARL +M +SKAYL V Sbjct: 193 QVFSRGKPLGPIQQVAPSKK-KGTMVRFKPDDEIFGEGTNFKPARLYRMARSKAYLFRGV 251 Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 + WSCD PE F+FP GL +L + + + I+ E F G+ E++G G Sbjct: 252 QIKWSCDPSRIHDQTPPEA-TFHFPNGLADFLAERTKGLTTITPESFAGRIERQGEA-GA 309 Query: 302 VEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 VEWA+ W E + + SYCNT+ T EGGTHESG R ALTRG+K YAEL KR Sbjct: 310 VEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAALTRGLKAYAELKGEKRGTI 369 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 I +DD++ A ++SVFI+ PEF GQTK KL + +AQR VE +LRDPFD +L +P A Sbjct: 370 ITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFVEASLRDPFDLWLSSSPKNAQ 429 Query: 417 KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 LLE+VIER+EERL+RRK +EV+R +A RKLRLPGKLADC+ + G ELFIVEGDSAGG Sbjct: 430 ALLEFVIERAEERLKRRKDKEVSRASATRKLRLPGKLADCAGSAVDGAELFIVEGDSAGG 489 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAKQAR+R QA+LPLRGKILNVASA EK N+++ DL+ ALG + ++YREEDLRYE Sbjct: 490 SAKQARDRKYQAILPLRGKILNVASASGEKFTANKELSDLMLALGAQAGAKYREEDLRYE 549 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596 ++IIMTDADVDGAHIASLL+TFFY+ M +LI HLFL PPL+R+ G KS YA D+ H Sbjct: 550 RIIIMTDADVDGAHIASLLITFFYRTMPELIRGGHLFLALPPLYRLAHGGKSEYARDDAH 609 Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 K+++L K K EI RFKGLGEM+ASQLKET MD KRTL RV + + S++D Sbjct: 610 KEELLATVFK--GKKPEIGRFKGLGEMMASQLKETTMDPKKRTLARVTLPRHEESVED-- 665 Query: 657 DSINKLMGTKADERFKFIQERASFID-DVG 685 + LMG K + RF+FIQE A F D+ Sbjct: 666 -LVETLMGRKPELRFRFIQENAEFASADLD 694 >gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus aureus subsp. aureus JKD6159] Length = 644 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 378/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ E + I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNEKKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|148266452|ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392485|ref|YP_001315160.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1] gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9] gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1] Length = 640 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 249/655 (38%), Positives = 378/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 NKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D + Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y++ Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSYVE 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ I E K VE AI + + +Y N I T EGGTHE G Sbjct: 235 LLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDG 291 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + + Sbjct: 292 FKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ LP Sbjct: 352 VRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I NN Sbjct: 412 GKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 472 NEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|300726297|ref|ZP_07059750.1| DNA gyrase, B subunit [Prevotella bryantii B14] gi|299776494|gb|EFI73051.1| DNA gyrase, B subunit [Prevotella bryantii B14] Length = 658 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 261/669 (39%), Positives = 390/669 (58%), Gaps = 29/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ+ NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQNNEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V+++ +G +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDVQVTVNEDGSITVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + +KRGT F PDP Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKIVGET-DKRGTCQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + AYL+ ++ + + AE +E F+ GLK +++ Sbjct: 180 IFTT-TTFQWDIIARRMRELAYLNAGIRITLTDLRPNAETGKT-RQEVFHAVEGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E A+ + + I SY N I T EGGTH +G Sbjct: 238 YVDRHRTHLFDDVIYLKTEKQGVP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 FRTALTRTLKAYADNDSAISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + YL ++P EA + E VI + R+ RK RE RK + Sbjct: 355 GNSEVAGAVQQAVGEALSDYLEEHPSEAKAICEKVILAATARIAARKARESVQRKNVMTG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKQCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVPWHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T F+ Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFF 534 Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRF 617 + M +IE+ HL++ +PPL++ T + S Y + ++ +Q ++++ I R+ Sbjct: 535 RFMPKVIEEGHLYIATPPLYKCTFKNKVSEYCYTDQQRQAFIDKYGNGIDDGKSIHTQRY 594 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET MD R L +V I + ++ + LMG + R +FI++ Sbjct: 595 KGLGEMNPEQLWETTMDPTSRLLKQVTIED----AAEADETFSMLMGDDVEPRREFIEQN 650 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 651 ATYA-NIDA 658 >gi|257876709|ref|ZP_05656362.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20] gi|257810875|gb|EEV39695.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20] Length = 677 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N I+ Sbjct: 5 KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 65 VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V + R + Q F G P L+K K R GT +TF+PD IF Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L VK + ++ P E F + G+K ++ Sbjct: 183 A-TRFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E + + +++ K+ VE A + + E S+ N + T +GGTHE G++ Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + A Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + V+N + + +YL +N + L+ I+ E R RK RE +R RK L Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532 Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++++ G K YA ++ K+ ++ K + R+KGLGEM A Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELNKLTQKIGK----GYLLQRYKGLGEMNA 588 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 639 >gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey] Length = 627 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 262/644 (40%), Positives = 379/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YD S I++LEGLE VR RPGMYI T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIASTSGKGLHHLVWEIVDNSIDEALAGYCDQINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + V DNGRGIPV K + +++I+T LHAGGKF Y++SGGLHGVG S Sbjct: 61 IEEYNSIRVTDNGRGIPVGIQEKM-GRPAVKVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ QG K YA++E+ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 641 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 248/656 (37%), Positives = 378/656 (57%), Gaps = 21/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +++Y A I++LEGLE VR RPGMYIG T EK LHHL E++DN++DE +AGYA Sbjct: 1 MSDVNNTEDYGAGQIQVLEGLEAVRKRPGMYIGSTSEKGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + ++ V DNGRGIPV K + +E+ILT LHAGGKF Y++SGGL Sbjct: 61 DTIEVVIEKDNWIKVTDNGRGIPVGIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDP 213 HGVG SVVNALS++L V V + ++ Q + +G+P L+ E+ + GT I F+ D Sbjct: 120 HGVGSSVVNALSEDLEVYVYKDRKVYHQGYKKGVPQFDLKVIEETDDDNTGTVIRFKADS 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + + L + T+ A+L+ + ++ ++ +++ GG+K+Y+ Sbjct: 180 EIFTETTTYHYETLQQRTRELAFLNKGISITLRDER-----GEEVREDTYHYEGGIKSYV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + EN+ + E K VE A+ + + + +Y N I T EGGTHE Sbjct: 235 EMLNENKQPLHEEPIYVHQTKDDI---EVEIALQYNKGFATNLLTYANNIHTYEGGTHEE 291 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + AL+R + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 292 GFKRALSRVLNSYGLNSKIIKEDKERLSGEDTREGLTAIVSIKHGDPQFEGQTKTKLGNS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + ++ V+ + F+ +L ++P ++E I S RL +K RE RK+A+ L Sbjct: 352 EVRQIVDKLFSELFERFLYEHPQVGRIVVEKGIMASHARLAAKKAREVTRRKSALEISSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS +E+FIVEGDSAGGS K R+ QA+LPLRGKILNV A ++I N Sbjct: 412 PGKLADCSSKDPSRSEIFIVEGDSAGGSTKSGRDSETQAILPLRGKILNVEKARLDRILN 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G ++ RY K+++MTDADVDGAHI +LLLTFFY+ M L+E Sbjct: 472 NNEIRSMITAFGTGIGGEFDLSKARYHKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEA 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPLF++TQG + Y +E +K+ E K ISR+KGLGEM A QL Sbjct: 532 GYVYIAQPPLFKLTQGKQKYYVFNERELEKLKAEL--EPTPKWSISRYKGLGEMNADQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R +L+V ++ + + LMG + R +FI++ A + ++ Sbjct: 590 ETTMNPENRAMLQVSLDDAI----EADQVFEMLMGDVVENRRQFIEDNAVYA-NLD 640 >gi|33862394|ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9313] gi|33640507|emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313] Length = 655 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 255/656 (38%), Positives = 371/656 (56%), Gaps = 16/656 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +AG+ Sbjct: 2 SEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVFEVVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L +G ++ DNGRGIP + H + KS LE +LT LHAGGKF + Y++SGGL Sbjct: 62 DEILVVLGPDGSASISDNGRGIPTDVHSR-TGKSALETVLTVLHAGGKFGSGGYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRP 211 HGVG+SVVNALS+ + VTV RQ + Q+F RG + + + + GT + F+P Sbjct: 121 HGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFKP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-EKYGIPEKEEFYFPGGLK 270 D +IF FD A L + AYL+G V+ + +++ + G P +E +++ GG+K Sbjct: 181 DEEIFTVGIVFDYATLSTRLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGIK 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 Y+ + + EI +EK + + I + N I T +GGTH Sbjct: 241 EYVTYMNAEKDALHPEIIYVNSEKDNV-QVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 331 ESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 GL+ LTR + +A ++ ++ +++ +LSV + +PEF GQTKTKL Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V++ + + YL NP +LE I+ R+ RE V RK+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 508 RNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +L+LTFFY+ +L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDSKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ +G Y ++E Q L F + K I RFKGLGEM+ Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPE--KANYTIQRFKGLGEMMPK 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET MD + R + RVE+ L + LMG K R +FI+ ++ +D Sbjct: 598 QLWETTMDPSARMMKRVEVQDAL----EADRIFTILMGDKVAPRREFIETHSAELD 649 >gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414] gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414] Length = 645 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 363/651 (55%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ IEV Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGHCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G +TV D+GRGIP + H + KS LE +LT LHAGGKF Y++SGGLHGVG+S Sbjct: 62 INADGSVTVTDDGRGIPTDTHSR-TGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGLS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD L VTV R N + Q++ RG+P++ L+ K K GT I F+PD +IF + Sbjct: 121 VVNALSDVLEVTVWRDNKVHVQRYERGVPVTELQAKPDKEGKTGTSINFKPDSQIFINSV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + AYL+ VK + + K P E + + GG+K Y+ ++ Sbjct: 181 EFDYITIAGRLRELAYLNAGVKIIFGDHRLELLKSDTPRIETYEYKGGIKEYIAYMNRDK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + EI E+ + V + + N I T +GGTH GL+ LTR Sbjct: 241 QPLHEEIIYVHGERNNV-QVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTR 299 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ + + ++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TLNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P A +L+ I+ + R RE V RK+ + LPGKLADCS Sbjct: 360 LVGEVLSEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N ++ L+ Sbjct: 420 SRDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + LRY +++IMTDADVDGAHI +LLLTFFY+ LIEQ +++ Sbjct: 480 TALGLGVKGDEFDSTQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF++ +G Y + E Q+ L + I RFKGLGEM+ QL +T M+ Sbjct: 540 PPLFKVERGKNHEYCYSERELQQYLGTLPSNAN--YNIQRFKGLGEMMPQQLWDTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R + +VEI + LMG + R +FI+ S ++ D+ Sbjct: 598 SRKMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLD 644 >gi|126725667|ref|ZP_01741509.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150] gi|126704871|gb|EBA03962.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150] Length = 653 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 347/658 (52%), Positives = 446/658 (67%), Gaps = 10/658 (1%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YDASSI +LEGLEPVR+RPGMYIGGTDE+ALHHL +EV+DN+MDE + Sbjct: 2 ANDLLTTPKDDPTYDASSIEVLEGLEPVRLRPGMYIGGTDERALHHLVAEVLDNSMDEAV 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+AN IEV L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ Sbjct: 62 AGHANRIEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQT 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALSD + V VAR ++ Q+FSRGIP P+EK N+RGT +TF Sbjct: 122 SGGLHGVGASVVNALSDSMVVQVARNKELYEQRFSRGIPQGPVEKVGAAPNRRGTSVTFH 181 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D +IF F ARL K +SKAYL V+ W K + P + F+FPGGL Sbjct: 182 ADEQIF-GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSEIDDGTTPTEATFHFPGGLS 237 Query: 271 TYLQTKLENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEG 327 YL L + + + F G ++K G VEWAI W + I SYCNT+ T EG Sbjct: 238 DYLNETLGTATTYAEKPFAGTVDFQEKFGVPGKVEWAINWTPSRDGFIQSYCNTVPTPEG 297 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 GTHESG A+ +GIK Y EL NK+A I +DL ++S FI EPEF GQTK +L Sbjct: 298 GTHESGFWAAVLKGIKAYGELINNKKATQITREDLTTGGSALVSCFISEPEFVGQTKDRL 357 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 +++AQR VEN++RD FD++L + A +L++++ RSEERLRR+ ++E RK+A +KL Sbjct: 358 ATVEAQRLVENSVRDHFDNWLAADTKSAGAILDFLVLRSEERLRRKMEKETARKSATKKL 417 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 RLPGKL DCS + GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ Sbjct: 418 RLPGKLTDCSNSNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKM 477 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N +I DL QALG +++ +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M +I Sbjct: 478 GQNAEINDLCQALGVGLGTKFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMI 537 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 + HL+L PPLFR+TQG K VY DE K E+ GKGKI++SRFKGLGEM A Sbjct: 538 DNGHLYLACPPLFRLTQGAKRVYCLDEIEKNNHFEK-GLGGKGKIDVSRFKGLGEMDAKD 596 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LK+T M+ R L+RV I++D +T D + +LMG K ++RF++IQE A F++++ Sbjct: 597 LKDTTMNPLTRKLIRVTIDEDE--PGETGDLVERLMGKKPEKRFEYIQENAKFVEELD 652 >gi|254469391|ref|ZP_05082796.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062] gi|211961226|gb|EEA96421.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062] Length = 698 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 389/654 (59%), Positives = 492/654 (75%), Gaps = 5/654 (0%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG Sbjct: 48 TPPPAAAGDAEYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAG 107 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+ I+VSL +G+LT+ DNGRGIP++ HPK+ +KS LE+I+TTLHAGGKFD+ YE SG Sbjct: 108 HASWIDVSLSEDGYLTITDNGRGIPIDPHPKYKDKSALEVIMTTLHAGGKFDSKVYETSG 167 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVGISVVNALS+EL V VAR ++ Q F RG+ LE V N+RGT + F+PD Sbjct: 168 GLHGVGISVVNALSEELVVEVARNRKLYRQTFRRGLADGGLELVGDVHNRRGTMVRFKPD 227 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKT 271 +IFG F ARL+KM +SKAYL G V+ W C K E G+PE F+FPGGLK Sbjct: 228 AEIFGKTLKFKPARLMKMARSKAYLFGGVEIRWRCAKSLADEANGVPESATFHFPGGLKD 287 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331 YL+ L ++ E+F G+T+ G H G VEWA+AW + + SYCNT+ T EGGTHE Sbjct: 288 YLEEALGKERRVTDEVFAGRTQATGRH-GAVEWAVAWFAGDGFVNSYCNTVPTPEGGTHE 346 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +GLR AL RG+K Y EL NK+A I DD++ SA G+LSVF+REPEF GQTK KL + + Sbjct: 347 TGLRYALLRGLKAYGELIGNKKASIITGDDVLTSAAGMLSVFVREPEFVGQTKDKLATNE 406 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A R ENA+RD FDH+L +P +A KLLEWVI+R+EERL+RR++++V RKTA+R+LRLPG Sbjct: 407 ATRIAENAVRDAFDHWLTASPNQANKLLEWVIDRAEERLKRRQEKDVARKTAVRRLRLPG 466 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS + + GTELFIVEGDSAGGSAKQARNRS QAVLPLRGKILNVA+AG +K+ NQ Sbjct: 467 KLADCSTSKSDGTELFIVEGDSAGGSAKQARNRSTQAVLPLRGKILNVANAGRDKLVANQ 526 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + DL+QALGC TRS Y ++DLRYE+++IMTDADVDGAHIA+LL+TFFY+EM DLI H Sbjct: 527 LLSDLIQALGCGTRSNYDDKDLRYERIVIMTDADVDGAHIAALLITFFYKEMPDLINNGH 586 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+RI+QG K++YA D+EH++++L+ K GKIEI RFKGLGEML +QLKET Sbjct: 587 LYLAVPPLYRISQGGKTLYARDDEHREQLLKTSFKKN-GKIEIGRFKGLGEMLPAQLKET 645 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +RTLL+V + +D + +T+ ++ +LMG K + RF FIQERA F D+ Sbjct: 646 TMDPKRRTLLKVVVGEDE--VIETRSAVEQLMGNKPEARFNFIQERAEFATDLD 697 >gi|300871637|ref|YP_003786510.1| DNA gyrase subunit B [Brachyspira pilosicoli 95/1000] gi|300689338|gb|ADK32009.1| DNA Gyrase B subunit [Brachyspira pilosicoli 95/1000] Length = 637 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 376/652 (57%), Gaps = 23/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y + +I++LEGL+PVR RPGMYIG T + LHHL EV+DN++DE +AG+ I Sbjct: 3 TGEKTYSSKNIQVLEGLDPVRKRPGMYIGSTGSQGLHHLVYEVVDNSIDEAMAGFCKNII 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + V D+GRGIPV+ HPK S LE+++T LHAGGKFDN TY++SGGLHGVG Sbjct: 63 VTIKKGNIIEVEDDGRGIPVDMHPKL-KISALEVVMTKLHAGGKFDNETYKVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS EL V++ ++ Q + +G+P P+++ K GT++TF PDP+IF Sbjct: 122 VSVVNALSTELIAEVSKDGKLYRQVYHKGVPEEPVKEVGKSNK-TGTKVTFTPDPEIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L + A+L+ ++ +E P EFY+ GG++ ++ E Sbjct: 181 TI-YDYKILANRLRELAFLNRGIRITLIDKRESK-----PVSNEFYYEGGIEMFITHLNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+ + + + T VE A+ + + I +YCN I T EGGTH G R A Sbjct: 235 NKKTLHDKPIYLHKTEDKT---DVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTA 291 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR +A+ K I+ + +D V ++SV I P+F GQTKTKL + + + Sbjct: 292 LTRVYTDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAV 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 E + + + Y QNP +LE +I + RR + RK A+ LPGKLA Sbjct: 352 TEKLVVEGLNDYFSQNPKVIKAILEKIISAANAREAARRARDLARRKNALESDSLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ E+++VEGDSAGG+AK R+R QA+LPLRGK+LNV A +KI + + Sbjct: 412 DCSEQEVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDTDSLK 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALGC + + +RY ++IIM DAD+DG+HI +LLLTFF++ M LI+ H+F+ Sbjct: 472 PIIAALGCGVGASFDISKIRYGRIIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFI 531 Query: 575 ISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL++I+ K+ YA+ +E + KILEE + K +I R+KGLGEM A QL ET M Sbjct: 532 AVPPLYKISFDKKNFVYAYTDEQRDKILEE---NKDRKYDIQRYKGLGEMNADQLWETTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R + +V + + LMG + R +FI+ A ++ ++ Sbjct: 589 NPETRLMYQV----LTEDAEKADQLFSMLMGDEVKPRREFIEANAKYVKNLD 636 >gi|13357637|ref|NP_077911.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762124|ref|YP_001752160.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920490|ref|ZP_02931785.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508595|ref|ZP_02689822.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701878|ref|ZP_02553290.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11270885|pir||E82937 DNA topoisomerase, DNA gyrase subunit B UU081 [imported] - Ureaplasma urealyticum gi|6899032|gb|AAF30486.1|AE002107_10 DNA topoisomerase - DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827701|gb|ACA32963.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902958|gb|EDT49247.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676050|gb|EDT87955.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701184|gb|EDU19466.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 650 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 249/666 (37%), Positives = 366/666 (54%), Gaps = 30/666 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + Y A SI++LEGLE VR RPGMYIG T + LHH+ E++DN++DE + G+A Sbjct: 1 MNDSNKEKKYTAESIKVLEGLEAVRKRPGMYIGSTQSEGLHHMIWEIVDNSIDEAMGGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++ V L +G + V D+GRGIP+E H K S +E +LT LHAGGKFDN +Y++SGGL Sbjct: 61 TIVRVILKKDGSVRVEDDGRGIPIEIHEK-TGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFRPD 212 HGVG SVVNALS V V + + + +F G K ++ ++GT I F PD Sbjct: 120 HGVGASVVNALSKNFKVWVNKNHVQYYVEFINGGHAIEPLKPINNKDVKEKGTTIEFIPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +I + + + + AYL+ V + E KE++++ GGLK Y Sbjct: 180 FEIMEENEWDELKIMA-RLKQLAYLNKGVNIEF-------ESELTNRKEKWHYEGGLKEY 231 Query: 273 LQTKLENRSLISSEIFTGKTEKKG--------THRGTVEWAIAWCEENPEITS-YCNTIL 323 + + + I G+ EK+ T+ E A + T +CN I Sbjct: 232 ITDLNAEKEPLFDLIVYGEEEKEVRVPGHNEQTYNIKCEVAFQYNNSYNNSTHSFCNNIN 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAG 381 T EGGTHE G ++A+TR + KYA + + I +D+ I+SV P++ G Sbjct: 292 TTEGGTHEEGFKLAITRLLNKYAVDKKYLKDTDDKITKEDVSEGLTAIISVKHPNPQYEG 351 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK KL + + + V F+ +L +NP E+ K++ V++ +E R R + RE R+ Sbjct: 352 QTKKKLGNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRR 411 Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + LPGKLADCS + TE++IVEGDSAGGSAK R R QA+LPLRGKI+NV Sbjct: 412 KSPFESNSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVE 471 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +KI N++I +++ A G ++ E LRY K+IIMTDADVDG+HI LLLTFFY Sbjct: 472 KAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFY 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + M LI+ ++++ PPL++++ YA+ ++ ++I K I R+KGL Sbjct: 532 RYMLPLIQNGNVYIAQPPLYKVSYAKTIKYAYSDQELERIKSTISNI---KYNIQRYKGL 588 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET MD R LL+V I + + LMG R +FI++ A + Sbjct: 589 GEMNPDQLWETTMDPKNRLLLKVNIED----AAIADKTFSLLMGDDVAPRKEFIEKNAKY 644 Query: 681 IDDVGT 686 + ++ Sbjct: 645 VKNIDA 650 >gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754] gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754] Length = 644 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 379/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV-DTTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|257869692|ref|ZP_05649345.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2] gi|257803856|gb|EEV32678.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2] Length = 674 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 242/655 (36%), Positives = 355/655 (54%), Gaps = 34/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++G+ N I+ Sbjct: 3 KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALSGFGNEID 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 63 VTIHKDNSISVRDNGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V++ R + +KF G P L+K K R GT + F+PD IF Sbjct: 121 ASVVNALSSWLEVSIVRDGIEYQEKFKDGGKPDGTLKKIGKTRKATGTTVRFKPDDTIFT 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L VK + ++ ++E F F G+K ++ Sbjct: 181 T-TKFSYDTLAERLRESAFLLRGVKITLTDER------AELQQEVFLFEEGIKEFVDYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E + ++ K+ VE A + + E S+ N + T +GGTHE G+++ Sbjct: 234 EEKDTLTPV-VYFSGTKEAI---EVEVAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKI 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + A Sbjct: 290 SMTKAFNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPIA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + V+N + + +YL +N + L+ I+ E R RK RE +R RK L Sbjct: 350 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRSGKKRKKGESLL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 469 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 470 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 529 Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++++ G K YA ++ + ++ K + R+KGLGEM A Sbjct: 530 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELNAVTKKIGK----GYMLQRYKGLGEMNA 585 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 586 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 636 >gi|315640722|ref|ZP_07895824.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM 15952] gi|315483477|gb|EFU73971.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM 15952] Length = 668 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 249/655 (38%), Positives = 366/655 (55%), Gaps = 34/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S+ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL EV+DNA+DE ++GY + I+ Sbjct: 3 KKSNEYNDASIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEVVDNAVDEALSGYGDEIK 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +G ++V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 63 VIIHKDGSISVQDFGRGMPVGMH--TSGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V + R + Q+F + G P LEK K + K GT + F PD IF Sbjct: 121 ASVVNALSEWLEVRIVRDGIEYRQRFVNGGHPEGTLEKIGKTKEKNGTTVRFLPDKGIFS 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L VK ++ +E ++ + F++ G+K +++ Sbjct: 181 TT-KFSYDTLAERLRESAFLLRGVKISFTDLREDDKE------DVFHYEEGIKEFVEYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E + +++ I EK+ VE A+ + + I S+ N + T +GGTHE+G++ Sbjct: 234 EEKDVLTPII-YFSGEKEMI---EVEVALQYNDGFSETILSFVNNVRTKDGGTHEAGMKA 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ALT+ + +YA ++ ++ D +LS+ + E +F GQTK KL + A Sbjct: 290 ALTKALNEYARKVGLLKEKDRNLEGSDFREGLSSVLSIRVPEHLLQFEGQTKEKLGTPAA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + V+NA+ + YL +N + L+ I+ E R RK RE +R +K L Sbjct: 350 RTAVDNAISEQLGFYLQENNEISQLLVRKAIKAREAREAARKAREESRNGKKKKKGESLL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 SGKLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 469 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 470 NEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 529 Query: 570 KHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++++G K V YA +E Q + E+ + + R+KGLGEM A Sbjct: 530 GKVYIALPPLYKVSKGTGKKEVIEYAWTDEELQTVTEKVGR----GYMLQRYKGLGEMNA 585 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD RTL++V I+ + + LMG K + R K+I+ F Sbjct: 586 DQLWETTMDPETRTLVQVRIDD----PAQAERRVTTLMGDKVEPRRKWIESHVQF 636 >gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367] gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367] Length = 647 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 248/661 (37%), Positives = 370/661 (55%), Gaps = 22/661 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE + Sbjct: 2 ADEKETKAQQAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIVDNGIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A+ I V+++ + +TV DNGRGIP+ K K LE + T LHAGGKF Y++ Sbjct: 62 AGFADEIHVTVNQDNSITVTDNGRGIPIGIQKK-TGKPALETVFTILHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRIT 208 SGGLHGVG SVVNALS +L V R ++ F G +P+ ++ +++ GT + Sbjct: 121 SGGLHGVGASVVNALSTDLEAQVTRDGKTYAIAFDHGHVKTPMHVIKEGLPQDQHGTAVH 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF + FD L + A+L+ ++ ++ P +E+F + GG Sbjct: 181 FLPDPDIFRETTVFDIKTLTTRIRELAFLNKGLRITIRDER-----PEKPTEEDFLYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327 ++ Y+ EN+ + + ++ G TVE A+ + ++ ++ N I T EG Sbjct: 236 IRHYVDYLNENKETLFEPPIYVEGQENGI---TVEVALQYTDDYHNNLLTFTNNIHTYEG 292 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + ALTR + YA + + ++ DD+ ++SV +P+F GQTKT Sbjct: 293 GTHEEGFKRALTRVVNDYARQNKLMKDNEANLTGDDVREGLTAVVSVKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + DA+ V++ D F +++++P A K+++ S+ R+ ++ RE +K+ + Sbjct: 353 KLGNSDARTAVDHTFADHFMRFMMEHPDVARKIVDKGTLASKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 EISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASM 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++I N++I L A+G + + + Y K+I+MTDADVDGAHI +LLLT Y+ M Sbjct: 473 DRILANEEIRSLFTAMGTGFGNDFDVSKVNYHKLILMTDADVDGAHIRTLLLTLVYRYMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 L++ +++ PPL+R+ QG Y +E + +L + K +I R+KGLGEM Sbjct: 533 PLLDAGFVYIACPPLYRVRQGKMQRYLDSDEELKDLLGQLPPS--PKPQIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET M+ R LLRV D + LMG K R +FI+ A+F + + Sbjct: 591 AEQLWETTMNPENRRLLRV----DAQDAINADQVFTMLMGDKVAPRREFIENNATFAE-L 645 Query: 685 G 685 Sbjct: 646 D 646 >gi|291531944|emb|CBK97529.1| DNA gyrase subunit B [Eubacterium siraeum 70/3] Length = 692 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 242/669 (36%), Positives = 354/669 (52%), Gaps = 33/669 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N Y A I+ILEGLE VR RPGMYIG T E LHHL E++DNA+DE +AGY Sbjct: 36 NTQVEHAYGADDIQILEGLEAVRKRPGMYIGSTGESGLHHLVYEIVDNAIDEALAGYCTE 95 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + V DNGRGIP HPK S ++ T LHAGGKF Y++SGGLHG Sbjct: 96 INVKILPGDVIEVTDNGRGIPTGIHPK-EKISAATVVYTILHAGGKFGGGGYKVSGGLHG 154 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L +TV I Q+F G K +K GT++ F+PD IF Sbjct: 155 VGASVVNALSEWLELTVYDGKEIHFQRFENGGHYKEQMKVIGTTDKTGTQVRFKPDSTIF 214 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F LL + +A+L+ +K S ++ + P++E + GG+ +Y++ Sbjct: 215 HST-EFKYDILLDRLREQAFLNAGLKIVLSDLRDEDK----PKQEVLQYEGGIISYVEWL 269 Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHES 332 + R + ++ + +VE A + + S+ N I T +GGTHE Sbjct: 270 QKKRGAEALHPDVVYIEGLLDNI---SVEIAFQYNTDFNSETFRSFANNIHTVDGGTHEI 326 Query: 333 GLRVALTRGIKKYAELTQN----------------KRAISIISDDLMISAVGILSVFIRE 376 + AL + I + + + K + + + + + ++SV + E Sbjct: 327 AFKNALNKVINDFVKQYKEQQANNNKKSKKKQDEVKEFVPLSGEAIREAINAVISVKLPE 386 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 EF GQTK KL + + + V + +Y ++P + + I R +K Sbjct: 387 CEFEGQTKGKLGNPEVRPVVYKITVEKLTYYFEEHPDTIATIAQKCINAQAARDAAKKAM 446 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 E RK+ LPGKLADCS TE++IVEGDSAGGSAKQ R+R QA+LPL GK+ Sbjct: 447 EAKRKSVTDGASLPGKLADCSDTDPEKTEVYIVEGDSAGGSAKQGRDRRFQAILPLWGKM 506 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++K+ NN ++ +V+ALG + LRY +V++M DADVDG+HI +LLL Sbjct: 507 LNVEKARADKVYNNDKLQPVVKALGTGIGEDFDITKLRYGRVVVMADADVDGSHIRTLLL 566 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ M LIE+ H++L PPLF++ +G K YA +E + + E K+++ R Sbjct: 567 TFFFRFMRPLIEEGHVYLAQPPLFKVFRGKKVRYAFSDEERDAYIAELAGESNAKVDVQR 626 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET MD RT+++V + + + LMG K + R +FI++ Sbjct: 627 YKGLGEMDPEQLWETTMDPAARTMIKVNLED----AAKADEIFSILMGDKVEPRREFIEQ 682 Query: 677 RASFIDDVG 685 A + D+ Sbjct: 683 NARYAKDLD 691 >gi|56420286|ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426] gi|56380128|dbj|BAD76036.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426] Length = 645 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 362/656 (55%), Gaps = 34/656 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + A+ Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N Sbjct: 2 AKHATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNY 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + +TV+D GRG+PV H K T E+ILT LHAGGKF Y+ SGGLHG Sbjct: 62 IFVQIHKDNSITVLDEGRGMPVGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L VT+ R I+ Q+F G +K NK GT I F+PDP IF Sbjct: 120 VGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD L + + A+L +K ++ +E F++ G++ ++ Sbjct: 180 STTV-FDYETLSERLRESAFLLKGLKIELVDER-------TGMREVFHYENGIEAFVAYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E + ++ E+ G VE+A + + E S+ N + T +GGTHE+G + Sbjct: 232 NEEKDVLHPV-VYFAGEQNGI---EVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAK 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR +YA ++ ++ D+ ++SV I E +F GQTK KL + + Sbjct: 288 TAMTRVFNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448 A+ V+ + + ++L +NP + L++ I + R RK RE R RK + Sbjct: 348 ARSAVDAVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEAL 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I Sbjct: 408 LSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDIL 467 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ A+G + + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 KNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 527 Query: 569 QKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL++I++ G + YA +E ++I ++ + I R+KGLGEM Sbjct: 528 AGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGR----GYTIQRYKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 584 ADQLWETTMNPQTRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIETHVAF 635 >gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 263/644 (40%), Positives = 378/644 (58%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD S I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AGY + I VS Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVS 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V DNGRGIPV K + +E+I+T LHAGGKF Y++SGGLH V S Sbjct: 61 IEEDNSIRVTDNGRGIPVGIQKKM-GRPAVEVIMTVLHAGGKFGGGGYKVSGGLHDVVAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS EL V V R+ I QK+ RGIP++ L+ ++ GT F+PDP+IF + Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K +E +K +EF++ GG+K+Y++ ++ Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQK------KEFHYEGGIKSYVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I E + K G VE ++ + E S+ N I T EGGTHE G + ALT Sbjct: 233 QPIHEEPVYVEGSKDGIQ---VEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALT 289 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y + ++ +D+ I+S+ P+F GQTKTKL + +A+ E Sbjct: 290 RVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + + F+ +L++NP A K++E + ++ + RK+A+ LPGKLADC Sbjct: 350 SVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E++IVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N ++ + Sbjct: 410 SSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTI 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E RY KVIIMTDADVDGAHI +LLLTFFY+ M +IE ++++ Sbjct: 470 ITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIYIAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLF+I QG K YA++++ +KIL E K I R+KGLGEM +QL ET MD Sbjct: 530 PPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPG--IQRYKGLGEMNPTQLWETTMDPE 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+LL+V + + + ++ LMG K + R FIQE A + Sbjct: 588 VRSLLQVSLQDAI----EADETFEILMGDKVEPRRNFIQENAKY 627 >gi|325678556|ref|ZP_08158167.1| DNA gyrase, B subunit [Ruminococcus albus 8] gi|324109775|gb|EGC03980.1| DNA gyrase, B subunit [Ruminococcus albus 8] Length = 665 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 254/671 (37%), Positives = 377/671 (56%), Gaps = 20/671 (2%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 K K EI D+ + + S+NYD + I +LEGLEPVR+RPGMYIG T K LHHL E+ Sbjct: 7 KEIKEVEIEDTESISQIDKSNNYDENQIEVLEGLEPVRVRPGMYIGSTGPKGLHHLVYEI 66 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DNA+DE +AGY I V + + VVDNGRGIP HPK S ++ T LHAGG Sbjct: 67 VDNAIDEALAGYCTEIIVDILPGDVIRVVDNGRGIPTGIHPK-EGISAATVVYTVLHAGG 125 Query: 142 KFDNSTYEISGG-LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 KF G LHGVG SVVNALS+ L +TV + + Q+F RG ++ Sbjct: 126 KFGGGGGYKVAGGLHGVGASVVNALSEYLELTVYDGSHVHFQRFDRGQYSEAMKVIGDT- 184 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 +K GT + F+PDP IF + FD LLK + +A+L+ +K +S + P Sbjct: 185 DKTGTEVKFKPDPLIFQETTTFDYEVLLKRLREQAFLNAGIKIIFSDLR----NAEKPVT 240 Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E ++ GG++ +++ + R +S ++ + E A+ + + I S Sbjct: 241 ETLHYEGGIRQFVEHIHKTRGVEPLSEDVIYINGVEDDMF---AEIALQYNDTYNEIILS 297 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIR 375 + N I T +GG+HE + ALT+ + +Y + + + +D I+SV + Sbjct: 298 FANNIHTPDGGSHEMAFKSALTKILNEYGKAHNLIKDNDDALMGEDCREGLTAIVSVKLT 357 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EF GQTK +L + + + V+ L++ +YL +NP A + + ++ + R ++ Sbjct: 358 NCEFEGQTKGRLGNPEVRPFVDKMLKEKLRNYLEENPAVAKAIFDKSLQAQKAREAAKRA 417 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE RK+ + LPGKLADCS+ TE++IVEGDSAGGSAK+ R+R QA+LPL G Sbjct: 418 RELTRRKSVLESASLPGKLADCSERDMTMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWG 477 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 K+LNV A +K+ N ++M +V ALG + LRY KVIIM DADVDG+HI +L Sbjct: 478 KMLNVEKARIDKVYGNDKLMPVVTALGTSIGEDFDISKLRYGKVIIMADADVDGSHIRTL 537 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 LLTFF++ M LIEQ+H++L PPLF++ + K YA +E + K + E + GK K+ + Sbjct: 538 LLTFFFRFMRPLIEQEHVYLAQPPLFKVERAKKVRYAFTDEERDKYIAELSEGGKLKVAV 597 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM QL ET MD +RT+++V + + + LMG K R +FI Sbjct: 598 QRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVK----ADEIFTILMGDKVGPRKEFI 653 Query: 675 QERASFIDDVG 685 ++ A ++ ++ Sbjct: 654 EKNAEYVRNLD 664 >gi|297570618|ref|YP_003696392.1| DNA gyrase subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296930965|gb|ADH91773.1| DNA gyrase, B subunit [Arcanobacterium haemolyticum DSM 20595] Length = 682 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 251/690 (36%), Positives = 369/690 (53%), Gaps = 33/690 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 +K+ E + A ++ Y+AS+I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 1 MSDEQKTAEDTEQRAGTVAQGTE-YNASNITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 59 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AGYA+ I V+L NG + V D+GRGIPV+ HP + +++++T LHA Sbjct: 60 EVVDNSVDEALAGYASEITVTLLDNGGVKVEDDGRGIPVDIHP-TEGVAAVQVVMTVLHA 118 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF N +Y +SGGLHGVGISVVNALS + V R ++ + G+P++PLE+ + Sbjct: 119 GGKFGNGSYAVSGGLHGVGISVVNALSTRMDTEVRRDGYVWRISYENGVPVAPLEQ-GEP 177 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249 +K GT TF P+ IF FD L + A+L+ +K ++ Sbjct: 178 TDKTGTTQTFWPNADIFET-VEFDFDTLRQRFHQMAFLNKSLKITLIDERETAVVEGDEV 236 Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWA 305 E + + + GL Y+ ++ + + + E K +VE A Sbjct: 237 TGEDDATETKHTQVTYQYDNGLHDYVTHLIKTKKSEPVHEHPIYFEAEDK-ERVISVEVA 295 Query: 306 IAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDL 362 + W E + NTI T EGGTHE G R ALT I KYA ++ ++ DD+ Sbjct: 296 MQWTNAYSESLHTFANTINTTEGGTHEEGFRTALTSIINKYARDKAILKEKDANLTGDDI 355 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 ++SV + EP+F GQTKTKL + +A+ V+ +L +P E +++ Sbjct: 356 REGLTAVISVKLGEPQFEGQTKTKLGNTEARTFVQQTTYAQLTDWLDMHPSEGKEIIRKA 415 Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 ++ RL RK RE R+ + + +PGKL DC+ E+FIVEGDSAGGSA Sbjct: 416 MQAQTARLAARKAREATRRKSVLESAAMPGKLKDCTSRKPEECEIFIVEGDSAGGSAVNG 475 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+ ++QA++P+RGKILNV A ++ ++ I L+ A G ++ + LRY K++ M Sbjct: 476 RDPNHQAIMPIRGKILNVEKARLDRALSSDSIQSLITAFGTGVGEEFDIDKLRYHKIVFM 535 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKI 600 DADVDG HIA+LLLT Y+ M LIE +++L PPL+R+ + Y ++ + Sbjct: 536 ADADVDGQHIATLLLTLVYRYMRPLIEHGYIYLAMPPLYRLKWTNAEHEYVFSDKERDIK 595 Query: 601 LEEFKKHGKGKIE-----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 LEE GK + I R+KGLGEM +L +T M+ RTL RV I + T Sbjct: 596 LEEGLAAGKRLPKAEGQGIQRYKGLGEMNDHELWDTTMNPETRTLKRVSIGE----AAAT 651 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 +S + LMG R FIQ A + + Sbjct: 652 DESFSVLMGEDVASRRSFIQRNAHDVRFLD 681 >gi|255535639|ref|YP_003096010.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10] gi|255341835|gb|ACU07948.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10] Length = 644 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 249/652 (38%), Positives = 379/652 (58%), Gaps = 21/652 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y ASSI+ LEG+E VR+RP MYIG + LHHL EV+DN++DE +AG+ + I V Sbjct: 2 SQKEYTASSIQALEGMEHVRLRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGHCDTISV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + ++V DNGRGIPV+ H K KS LE+++T + AGGKFD +Y++SGGLHGVG+ Sbjct: 62 VIHEGESISVKDNGRGIPVDMHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS L TV R ++ QK+S G L + + +RGT + F+PD IF + Sbjct: 121 SCVNALSTSLVATVNRDGKVYQQKYSEGKALDKVHEIG-TTGERGTEVFFQPDATIFQET 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + ++L+ + + ++ E E F+ GGL+ +++ N Sbjct: 180 V-YNYDTLAARLRELSFLNKGITITLTDERRPNEDG-TFVSEVFHSDGGLREFVEFIDGN 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 R I S + + + VE A+ + E Y N I T EGGTH +G R AL Sbjct: 238 RESIMSNVIYMEGDNNDIP---VEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRAL 294 Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +KK+A+ K + + DD ++SV + EP+F GQTKTKL + + V Sbjct: 295 TRTLKKFADELGIPAKEKVEVTGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + ++L +NP EA +++ V+ + ++ + V RK+ + LPGKL+D Sbjct: 355 DKIVGEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSPMGGSGLPGKLSD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +ELF+VEGDSAGG+AKQ R+R QA+LPLRGKILNV + K+ +N++I + Sbjct: 415 CSSKDPAISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIKN 474 Query: 516 LVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + ALG ++ LRY KV+IMTDAD+DG+HI++L+LTFF++ M +LIE Sbjct: 475 IYTALGVSVGTEEDSKALNISKLRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++F+ PPL+ + +G K +YA++E+ +++ E GKG +E+ R+KGLGEM QL E Sbjct: 535 YIFIAQPPLYLLKKGQKKIYAYNEKEREEFTLELAPDGKG-VEVQRYKGLGEMNPEQLWE 593 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 T ++ R L +V I SL D + + LMG + R +FI++ A + Sbjct: 594 TTLNPEHRILKQVTIE----SLADADNVFSMLMGDEVPPRREFIEKNAVYAK 641 >gi|89054416|ref|YP_509867.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1] gi|88863965|gb|ABD54842.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1] Length = 653 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 351/647 (54%), Positives = 453/647 (70%), Gaps = 10/647 (1%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AGYA IEV L Sbjct: 13 QSYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGYATRIEVEL 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +T+ DNGRG+P + HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGVG SV Sbjct: 73 HADHAVTIRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 132 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD + V VAR + Q+FSRG+PL P+ + N+RGT TF D +IFG Sbjct: 133 VNALSDSMVVQVARDRKVVEQRFSRGLPLGPVTEIGAAPNRRGTTTTFHADEQIFGS-HR 191 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ARL+KM QSKAYL V+ W K + P + F+FPGGL YL L + Sbjct: 192 FKPARLMKMVQSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLTETLGKTA 248 Query: 282 LISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + F GK E ++ G+VEWAI+W + I S+CNT+ T EGGTHE+G A+ Sbjct: 249 TYTEIPFAGKVEFQQRFNVPGSVEWAISWTPARDGFIQSFCNTVPTPEGGTHEAGFWAAI 308 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +GI+ Y EL NK+A +I DD+ A ++S FI EPEF GQTK +L + +AQR VE Sbjct: 309 LKGIRAYGELAGNKKAANITRDDIATGAGALVSCFIAEPEFVGQTKDRLATTEAQRLVEQ 368 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A+RD FD++L QN EA +L++++ R+EERLRRR ++E RK+A +KLRLPGKL DCSQ Sbjct: 369 AVRDHFDNWLGQNTKEAGAILDFLVLRAEERLRRRAEKETARKSATKKLRLPGKLVDCSQ 428 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + GTELFIVEGDSAGGSAK ARNR NQA+LPLRGKILNV A S K+ +N +I DL Q Sbjct: 429 SARDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGKILNVLGAASGKLTSNAEISDLCQ 488 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG +++ EDLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+L PP Sbjct: 489 ALGVGMGTKFNIEDLRYDKIIIMTDADVDGAHIAALLMTFFFSQMRPMIDGGHLYLACPP 548 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LFR+TQG + VY DE+ + +++E+ GKGKI++SRFKGLGEM A LKET MD R Sbjct: 549 LFRLTQGARRVYCLDEQERDEMMEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPESR 607 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV ++ D+ +T D + +LMG K + RF++IQE A F++++ Sbjct: 608 KLIRVSVDDDV--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 652 >gi|146276459|ref|YP_001166618.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17025] gi|145554700|gb|ABP69313.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 663 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 342/647 (52%), Positives = 449/647 (69%), Gaps = 10/647 (1%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A IEV L Sbjct: 23 ETYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATRIEVEL 82 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +T+ DNGRGIPV+ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGVG SV Sbjct: 83 HADHSVTIRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASV 142 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD + V VAR ++ Q F+RGI P++ N+RGT ITF PDP+IF Sbjct: 143 VNALSDTMRVEVARNRELWVQSFARGIAQGPVKMVGAASNRRGTTITFHPDPEIF-GHLQ 201 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ARL+KM +SKAYL V+ W K P++ F+FPGGL YL +L S Sbjct: 202 FKPARLMKMARSKAYLFSGVEIRW---KSAIPDGDTPQEAVFHFPGGLGDYLAEQLSGAS 258 Query: 282 LISSEIFTGK--TEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + + F GK ++K G+VEWAI W + I SYCNT+ T EGGTHESG A+ Sbjct: 259 TYAEKPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHESGFWSAI 318 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +GI+ Y EL +N++A I +D++ ++SVFIREP+F GQTK +L + +A + VEN Sbjct: 319 LKGIRAYGELVKNRKADQITREDMLAGGSALISVFIREPQFVGQTKDRLSTEEAAKLVEN 378 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A+RD FD++L N A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DCS Sbjct: 379 AVRDHFDNWLAANTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSA 438 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 GTELFIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A S K+ N +I DL Sbjct: 439 TARDGTELFIVEGDSAGGSAKMARDRTLQALLPLRGKILNVLGAASGKMGANAEINDLCL 498 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+L PP Sbjct: 499 ALGTGMGTRFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPP 558 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+TQG K +Y D+ K+ L + GKGKI++ RFKGLGEM A LK+T M+ R Sbjct: 559 LYRLTQGAKRLYVADDVEKELWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATR 617 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 618 KLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 662 >gi|255530774|ref|YP_003091146.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366] gi|255343758|gb|ACU03084.1| DNA gyrase, B subunit [Pedobacter heparinus DSM 2366] Length = 652 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 253/662 (38%), Positives = 373/662 (56%), Gaps = 21/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + NY A +I++LEGLE VR RP MYIG T K LHHL EV+DN++DE +AG+A Sbjct: 2 SEEKDPKSNYSADNIQVLEGLEAVRKRPSMYIGDTGIKGLHHLVYEVVDNSIDEALAGHA 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ + + V DNGRGIP + K KS LEI++T LHAGGKFD TY++SGGL Sbjct: 62 DTIYVNILKDNSIRVEDNGRGIPTGINTK-EQKSALEIVMTVLHAGGKFDKDTYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS L V R+ I+ Q+++ G PL ++ GT ITF PDP Sbjct: 121 HGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL-GTIITFTPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + L + ++L+ +K + ++E E E F+ GGLK ++Q Sbjct: 180 IFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENG-EFLSELFHSEGGLKEFVQ 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 R + E + K G VE A+ + + E SY N I T EGGTH +G Sbjct: 239 FLDGTRPSLIPEPIYVEGIKNGIP---VELALQYNDSYSENVHSYVNNINTHEGGTHIAG 295 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +K YA+ + + + DD ++SV ++EP+F GQTKTKL + + Sbjct: 296 FRRGLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + YL + P EA ++ VI + R+ + V RK+ + LP Sbjct: 356 VMGAVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQRKSVMGGSGLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS + EL++VEGDSAGG+AKQ R+R+ QA+LPL+GKILNV A KI N Sbjct: 416 GKLADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYEN 475 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I ++ ALG ++ ++ LRY K++IMTDAD+DG+HI +L+LTFF++ M Sbjct: 476 DEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTLILTFFFRYMKA 535 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 LIE ++++ +PPL+++ +G + Y +++ + ++ K GK + I R+KGLGEM Sbjct: 536 LIEAGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGKEESVHIQRYKGLGEMN 595 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL +T ++ RTL++ I + + LMG + R FI+ A + + Sbjct: 596 AEQLWDTTLNPATRTLMQATIENAAEC----DHTFSMLMGDEVAPRRDFIERNAKYAK-I 650 Query: 685 GT 686 Sbjct: 651 DA 652 >gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010] gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010] Length = 656 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 266/664 (40%), Positives = 383/664 (57%), Gaps = 27/664 (4%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY I Sbjct: 5 QEHENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYCTDI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLHGV Sbjct: 65 EVTINEDNSITVEDNGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS + V R+ I+ Q++ +G PL P++ + GTR F PD IF Sbjct: 124 GVSCVNALSKHMMSQVFREGKIYQQEYEKGKPLYPVKVVGETEK-TGTRQQFWPDGTIFT 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + + + AYL+ +K + E E F+ GLK Y++ Sbjct: 183 TTV-FQWDVVARRMRELAYLNAGIKITLIDLRPDPETGKT-RTEIFHAKDGLKEYVRYVD 240 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +R + +++ K+EK+G +E AI + + I SY N I T EGGTH G R Sbjct: 241 RHRQHLFNDVIYLKSEKQGVP---IEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRT 297 Query: 337 ALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 ALTR +K YA+ K I I +D ++SV + EP+F GQTKTKL + Sbjct: 298 ALTRTLKTYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNS 357 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449 + V+ A+ + YL ++P EA + V+ + R+ RK RE RK + L Sbjct: 358 EVSGAVQQAVGEALSAYLEEHPSEAKMICNKVVLAATARIAARKARESVQRKNVMTGGGL 417 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV ++ Sbjct: 418 PGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFE 477 Query: 510 NQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY+ M Sbjct: 478 AESVMNIIQSIGVRFGVEEDSDFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYM 537 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGE 622 +IEQ HLF+ +PPL++ T S Y + E+ +Q ++++ +GK I R+KGLGE Sbjct: 538 PKVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYGAGEEGKTIHTQRYKGLGE 597 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET MD R L +V I + D + + LMG + R +FI++ A++ Sbjct: 598 MNPEQLWETTMDPKTRLLKQVTIE----NAADADEVFSMLMGDDVEPRREFIEQNATYA- 652 Query: 683 DVGT 686 ++ Sbjct: 653 NIDA 656 >gi|118587497|ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163] gi|71466856|emb|CAH41002.1| DNA gyrase subunit B [Oenococcus oeni] gi|118432147|gb|EAV38888.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 652 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 252/656 (38%), Positives = 375/656 (57%), Gaps = 22/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 S +++Y SSI+ILEGLE VR RPGMYIG T LHHL E+IDN +DE +AG+A+ Sbjct: 11 APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + ++++ + +T+ D+GRG+PVE PK + +E + T LHAGGKFD+ +Y++SGGLHG Sbjct: 71 VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215 VG SVVNALS E+ V V R N I+ F RG + ++ ++ KRGT + F PDP I Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ ++ + + K E F + GG+ Y++ Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKN-----ESFMYEGGIAEYVKF 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N+ + E + E+ G VE A+ + + + S+ N I T EGGTHE+G Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFTNNIHTHEGGTHETGF 301 Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ++ALTR I Y + + +D+ I+S+ +P+F GQTKTKL + DA Sbjct: 302 KMALTRIINDYVKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 Q+ V + F+ ++++NP A + + S+ R+ +K R+ +K+ + L G Sbjct: 362 QQAVNHQFSTIFNRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISALAG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +K+ N+ Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G ++ Y KVIIMTDADVDGAHI +LLLT F++ M LI+ + Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541 Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+ + G + VY +E + K + I R+KGLGEM A QL Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD R LLRV D + + + LMG + + R +FI++ A F++D+ Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651 >gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2] gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2] Length = 647 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 374/652 (57%), Gaps = 21/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Y A I++LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AG+A Sbjct: 13 EDKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGFATD 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IE++++ N + V DNGRG+P K S +E I T LHAGGKF Y++SGGLHG Sbjct: 73 IEITIEKNNIIRVEDNGRGMPTGIVEK-TGISGVETIFTVLHAGGKFGGGAYKVSGGLHG 131 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V V + F +F G + K K G+ + F+ DP+IF Sbjct: 132 VGASVVNALSEWLEVNVHQNGHEFFLRFEDGGKATGPLKIINDSEKHGSIVRFKADPEIF 191 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + +D L + A+L+ ++ ++E P++ E+ + GG++ Y++ Sbjct: 192 QETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREA-----EPKRIEYKYDGGIRQYVEYL 246 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N++ + E+ + + G E A+ + + P I S+CN I T EGGTHE G R Sbjct: 247 NKNKTPLHEEVVYVEGIEDGIL---AEIAMQYNDGYIPSIYSFCNNINTMEGGTHEDGFR 303 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +ALTR I YA K+ ++ DD+ I+SV +P++ GQTKTKL + + ++ Sbjct: 304 LALTRIINAYAREQGMIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRK 363 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + L + D + ++NP A +++ I S+ RL +K RE RK+A+ LPGKL Sbjct: 364 IVSSILGEQLDRFFMENPETAKIIVDKAILASKARLAAKKARELTRRKSALEITSLPGKL 423 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A E++IVEGDSAGGSAKQ RN QA+LPLRGKILNV A ++I N +I Sbjct: 424 ADCSSKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLQRIFENNEI 483 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A GC + LRY K+IIMTDADVDGAHI +L+LTFFY+ + +IE +++ Sbjct: 484 RSMITAFGCGIGEEMDVSKLRYHKIIIMTDADVDGAHICTLMLTFFYRYLRPIIEGGYVY 543 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPLF++ +G + Y + EE + + ++ + + R+KGLGEM QL ET M Sbjct: 544 IAMPPLFKVAKGNRVEYVYKEEEVETVRASMGEN----VNVQRYKGLGEMNPEQLWETTM 599 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D RTL +V I+ + + LMG + + R FIQE A + + Sbjct: 600 DPAFRTLKQVNIDDAM----EADSIFEMLMGEEVEPRRDFIQENAIYAT-LD 646 >gi|84683525|ref|ZP_01011428.1| DNA topoisomerase IV, B subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668268|gb|EAQ14735.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium HTCC2654] Length = 650 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 346/651 (53%), Positives = 444/651 (68%), Gaps = 10/651 (1%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + SD+YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+A I Sbjct: 6 TNPSDDYDASSIEVLEGLEPVRQRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHATRI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV L G+ +TV DNGRGIP++ HPKFP KS LE+IL TLHAGGKF Y+ SGGLHGV Sbjct: 66 EVELHGDYSVTVTDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGV 125 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALSD L V VA+ +F Q+FSRG+PL P+EK N+RGT +TF D +IFG Sbjct: 126 GSSVVNALSDSLVVQVAKNKELFEQRFSRGLPLGPVEKVGAAPNRRGTSVTFHADDQIFG 185 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F RL + +SKAYL V+ W K + P + F+FPGGLK YL+ L Sbjct: 186 S-HRFKPKRLFTLARSKAYLYSGVEIRW---KSAIDDGETPTEATFHFPGGLKDYLKEVL 241 Query: 278 ENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 S S F GK E +K G VEWAI W + I SYCNT+ T EGGTH +G Sbjct: 242 GTASTYSDTGFAGKVEFREKFGEPGYVEWAINWTPARDGFIQSYCNTVPTPEGGTHVAGF 301 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+ +GIK Y EL NK+A I DDL+ ++S FI +P F GQTK +L + A + Sbjct: 302 WAAILKGIKAYGELVGNKKAAQINRDDLLTGGCALVSTFIADPAFVGQTKDRLSTEAAAK 361 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 VE A+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 362 MVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKSATKKLRLPGKLV 421 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS GTE+F+VEGDSAGGSAK R+R QA+LPLRGKILNV A S K+ NQ+I Sbjct: 422 DCSATNREGTEIFLVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGQNQEIN 481 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 DL QALG ++R +DLRY+KVIIMTDADVDGAHIA+LL+TFF+ +M LI+ HL+L Sbjct: 482 DLCQALGVGMGIKFRVDDLRYDKVIIMTDADVDGAHIAALLMTFFFSQMRPLIDHGHLYL 541 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+TQG K +Y D+ K + + GKGKI++ RFKGLGEM A LKET MD Sbjct: 542 ACPPLYRLTQGAKRLYVADDAEKDAWMAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTMD 600 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 N R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 601 PNTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 649 >gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328] gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328] Length = 645 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 248/651 (38%), Positives = 372/651 (57%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSTYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVE 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIP++ H K +S LE ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INPDNSVRVTDDGRGIPIDTHSK-TGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + + Q++ RG+P++ +++ + GT + F+PD KIF Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTEVKEHSSKETQTGTSVCFKPDTKIFTTGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + AYL+ V+ + ++ K + E + + GG+K Y+ + Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + + E+ + V + I + N I T +GGTH GL+ LTR Sbjct: 241 QALHEDTIYVSGERNNV-QVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTR 299 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ G++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + +L NP A +LE I+ + R+ R+ V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479 Query: 518 QALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + ++ LRY KVIIMTDADVDGAHI +LLLTFFY+ +L++Q +++ Sbjct: 480 TALGLGIKGEEFDPSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVDQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y ++E+ Q+ L EF + I RFKGLGEM+ +QL +T M+ Sbjct: 540 PPLYKVERGRNHYYCYNEQQLQQQLAEFPDNAN--YTIQRFKGLGEMMPNQLWDTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R++ RVEI + LMG + R +FI++ A +D D+ Sbjct: 598 TRSIKRVEIED----AAEADHIFTVLMGDRVAPRRQFIEDHAPRLDITDLD 644 >gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583] gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11] gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583] gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11] Length = 642 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 374/653 (57%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A I+V Sbjct: 5 AQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVI 64 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+D+GRGIPV K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 65 IEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 123 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V V + ++ Q++ RG + L+ E+ ++ GT + F PDP+IF + Sbjct: 124 VVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPEIFTETT 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D +L + A+L+ + +E E +++ GG+K+Y++ N+ Sbjct: 183 VYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVEHLNANK 237 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I E + E++ TVE ++ + + I S+ N I T EGGTHESG + +LT Sbjct: 238 DVIFPEPIFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSLT 294 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + + +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 295 RVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTD 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + F +L++NP +++E + S+ RL ++ RE RK A+ LPGKLADC Sbjct: 355 RLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N++I L Sbjct: 415 SSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSL 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 475 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQ 534 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y EE K+LEE K + R+KGLGEM QL ET Sbjct: 535 PPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDHQLWETT 592 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KR + RV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 593 MDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 641 >gi|257867817|ref|ZP_05647470.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30] gi|257874144|ref|ZP_05653797.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10] gi|257801900|gb|EEV30803.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30] gi|257808308|gb|EEV37130.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10] Length = 677 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N I+ Sbjct: 5 KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 65 VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V + R + Q F G P L+K K R GT +TF+PD IF Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L VK + ++ P E F + G+K ++ Sbjct: 183 A-TKFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E + + +++ K+ VE A + + E S+ N + T +GGTHE G++ Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + A Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + V+N + + +YL +N + L+ I+ E R RK RE +R RK L Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532 Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++++ G K YA ++ K+ ++ K + R+KGLGEM A Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGK----GYMLQRYKGLGEMNA 588 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 639 >gi|327404490|ref|YP_004345328.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823] gi|327319998|gb|AEA44490.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823] Length = 650 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 258/658 (39%), Positives = 378/658 (57%), Gaps = 21/658 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + +Y A +I++LEGLE VR RP MYIG K LHHL EV+DN++DE +AG+ Sbjct: 1 MSEEKKNQDYSADNIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V ++ + +TV DNGRGIP K KS LEI++T LHAGGKFD TY++SGGL Sbjct: 61 DTIGVWINEDNSITVKDNGRGIPTGI-TKKEGKSALEIVMTVLHAGGKFDKDTYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS LH V R IF Q++ G PL + + +K GT +TF+PD Sbjct: 120 HGVGVSCVNALSIHLHAVVHRDGKIFEQEYQIGKPLYEVREIGN-SDKHGTEVTFKPDGT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + ++ L + A+L+ + + +E+ + P F+ GGL+ + Q Sbjct: 179 IFEN-TEYNYDTLCARMRELAFLNKGITITMTDLRELDDNG-NPTSTIFHSEGGLREFAQ 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 NR + +++ + E++G VE A+ + I +Y N I T EGGTH SG Sbjct: 237 YLDRNREPLVADVIYFEGEREGIP---VEVALTYNTSYTENIQAYVNNINTHEGGTHLSG 293 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LT +KKYA + + I I DD ++SV ++EP+F GQTKTKL + + Sbjct: 294 FRRGLTNTLKKYATDSGMLAREKIEIDGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNRE 353 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 V A+ + YL ++P EA +++ VI R+ + V RK + LP Sbjct: 354 VTAPVSQAVSEMLSIYLEEHPNEAKIIVDKVILAARARHAARKAREMVQRKNVMTGSGLP 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ E++ VEGDSAGG+AKQ R+R QA++PLRGKILNV A KI N Sbjct: 414 GKLADCSEKDPSLCEIYFVEGDSAGGTAKQGRDRHFQAIMPLRGKILNVEKAMHHKIFEN 473 Query: 511 QQIMDLVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ ALG R ++ E LRY K+IIM DADVDG+HI +L+LTFF++ M + Sbjct: 474 EEIKNMYTALGVRIGTEEDSKALNIEKLRYHKIIIMCDADVDGSHIETLILTFFFRFMKE 533 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEML 624 LIE ++++ +PPL+++ +G KS YA +E+ + ++ + K G + + R+KGLGEM Sbjct: 534 LIELGYIYIATPPLYQVKKGAKSDYAWNEDQRDILINQLKGGGADSSVNVQRYKGLGEMN 593 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A QL +T M+ RTL +V I + LMG + R +FI++ A + Sbjct: 594 AEQLWDTTMNPEYRTLRQVTIENAAEC----DQIFSMLMGDEVPPRREFIEKNAKYAK 647 >gi|325954875|ref|YP_004238535.1| DNA gyrase subunit beta [Weeksella virosa DSM 16922] gi|323437493|gb|ADX67957.1| DNA gyrase, B subunit [Weeksella virosa DSM 16922] Length = 671 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 257/656 (39%), Positives = 386/656 (58%), Gaps = 22/656 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + + Y A +I+ +EG+E VR+RP MYIG + LHHL EV+DN++DE +AG+ + I V Sbjct: 29 SQNTYTADNIQAIEGMEHVRLRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGFCDTISV 88 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + ++V DNGRGIPV+ H K KS LE+++T + AGGKFD TY++SGGLHGVG+ Sbjct: 89 KILEGNSISVSDNGRGIPVDIHKK-EGKSALEVVMTKIGAGGKFDKDTYKVSGGLHGVGV 147 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS+ L V + + Q++ +G PL +++ +K GT +TF PD IF + Sbjct: 148 SCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKSGTTVTFTPDNTIFNE- 205 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + +YL+ + + ++ EK P E F+ GGLK +++ N Sbjct: 206 LEYNFNTLANRLRELSYLNKGITITLTDERVKDEKG-EPLLEVFHSDGGLKEFVEFIDGN 264 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 R I + + E+ G VE A+ + E Y N I T EGGTH +G R AL Sbjct: 265 REAIMDNVICMEGERDGIP---VEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRAL 321 Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +KKYA+ N K + I+ DD I+SV + EP+F GQTKTKL + + V Sbjct: 322 TRTLKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFEGQTKTKLGNSEVSGAV 381 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + ++L +NPIEA +++ VI + ++ + V RK + LPGKLAD Sbjct: 382 DKIVSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQRKNPMGGSGLPGKLAD 441 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV A + K+ +N++I + Sbjct: 442 CSSRNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAMAHKVLDNEEIKN 501 Query: 516 LVQALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + ALG ++ LRY KV+IMTDADVDG+HIA+L+LTFF++ M +LIE Sbjct: 502 IYTALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENG 561 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H+++ +PPL+ + +G K+ YA EE ++ ++E+ GKG + I R+KGLGEM A QL + Sbjct: 562 HIYIATPPLYLVKKGNKAEYAWGEEEREALVEKLAPDGKG-VTIQRYKGLGEMNAEQLWD 620 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ RT+ +V I + + + LMG R +FI++ A + + Sbjct: 621 TTLNPQNRTMRKVTIE----NAAEADRVFSMLMGDDVQPRREFIEKNAEYAK-IDA 671 >gi|295689649|ref|YP_003593342.1| DNA topoisomerase IV subunit B [Caulobacter segnis ATCC 21756] gi|295431552|gb|ADG10724.1| DNA topoisomerase IV, B subunit [Caulobacter segnis ATCC 21756] Length = 755 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 373/688 (54%), Positives = 471/688 (68%), Gaps = 14/688 (2%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 + L S++ P+ + + + A SA Y A+ I +LEGLEPVR RPG Sbjct: 75 PAAPLLSSVEPRVEATPRPIPPPPPSSKPAPAAKPSAPGEYSAADIEVLEGLEPVRKRPG 134 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIGGTDE+ALHHLF+EV+DN+MDE +AG+A IEV LD +GFL+V D+GRG+PV+ HPK Sbjct: 135 MYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLDADGFLSVKDDGRGMPVDPHPK 194 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 +P KS LE+I+T LHAGGKF YE SGGLHGVG SVVNALS+ + VTV R Q Sbjct: 195 YPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVVNALSERVEVTVWRDGFEHLQV 254 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+RG PL P+++ + +GT + F+PD +IFG+ F ARL +M +SKAYL V+ Sbjct: 255 FARGKPLGPIQQVAPSKK-KGTMVRFKPDDEIFGEGTNFKPARLYRMARSKAYLFRGVQI 313 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 WSCD PE F+FP GL +L + + + I+ E F+G+ E++G G VE Sbjct: 314 KWSCDPSRIHDQTPPEA-TFHFPNGLADFLAERTKGLTTITPESFSGRIERQGEA-GAVE 371 Query: 304 WAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII 358 WA+ W E + + SYCNT+ T EGGTHESG R ALTRG+K YAEL KR I Sbjct: 372 WAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAALTRGLKAYAELKGEKRGGIIT 431 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 +DD++ A ++SVFI+ PEF GQTK KL + +AQR VE ALRDPFD +L +P A L Sbjct: 432 ADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQRFVEQALRDPFDLWLSSSPKNAQAL 491 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 LE+VIER+EERL+RRK +EV+R +A RKLRLPGKLADC+ + G ELFIVEGDSAGGSA Sbjct: 492 LEFVIERAEERLKRRKDKEVSRASATRKLRLPGKLADCAGSAVDGAELFIVEGDSAGGSA 551 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQAR+R QA+LPLRGKILNVASA EK N+++ DL+ ALG + S+YREEDLRYE++ Sbjct: 552 KQARDRKYQAILPLRGKILNVASASGEKFTANKELSDLMLALGAQGGSKYREEDLRYERI 611 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFFY+ M D+I Q HLFL PPL+RI G KS YA D+ HK Sbjct: 612 IIMTDADVDGAHIASLLITFFYRTMPDVIRQGHLFLALPPLYRIAHGGKSEYARDDAHKD 671 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L K K EI RFKGLGEM+A+QLKET MD KRTL RV + + S ++ Sbjct: 672 ELLATVFK--GKKPEIGRFKGLGEMMAAQLKETTMDPKKRTLARVTLPRHEES---VEEL 726 Query: 659 INKLMGTKADERFKFIQERASFID-DVG 685 + LMG K + RF+FIQE A F D+ Sbjct: 727 VETLMGRKPELRFRFIQENAEFATADLD 754 >gi|315650187|ref|ZP_07903262.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] gi|315487544|gb|EFU77852.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] Length = 650 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 372/648 (57%), Gaps = 20/648 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y AS I+ILEGLE VR+RPGMYIG + LHHL E++DN++DE +AG+ IEVS++ Sbjct: 17 EYGASQIQILEGLEAVRVRPGMYIGSISSRGLHHLVYEIVDNSVDEALAGFCTEIEVSIN 76 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ K LE++ T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 77 EDNSITVKDNGRGIPVDIQKKA-GIPALEVVFTILHAGGKFGGGGYKTSGGLHGVGASVV 135 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L V V R ++ +F +G + +E + K GT ++F PD IF + Sbjct: 136 NALSTWLDVKVYRDGKVYHMRFEKGKVVEKIEVIGECDPQKTGTEVSFLPDAGIFEETV- 194 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L+ +K ++E K F++ GG+K ++ + + Sbjct: 195 YDFDILKIRLRETAFLTKALKITLIDNREEKRK------MSFHYEGGIKEFVTYLNKGKV 248 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I ++ + K+ VE A+ + I ++ N I T EGGTH SG + ALT+ Sbjct: 249 PIYEDVIYCEGTKEKVM---VEVAMQHNDNYSESIYTFVNNINTPEGGTHLSGFKNALTK 305 Query: 341 GIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +YA + + ++ +D+ V I+SV I +P+F GQTK KL + +AQ V + Sbjct: 306 TFNEYARSNKLLKDSDENLSGEDIREGLVAIISVKIEDPQFEGQTKQKLGNSEAQTAVNS 365 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + ++L QNP A + + + + R+ + RK+A+ + LPGKLADCS Sbjct: 366 IVSEQLTYFLEQNPTVAKIISEKAITAQRARAAARKARDLTRRKSALDNMSLPGKLADCS 425 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+FIVEGDSAGGSAK AR R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 426 SKNPKECEIFIVEGDSAGGSAKGARRRDTQAILPLRGKILNVEKARLDKIYSNAEIKGMI 485 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+IIMTDADVDGAHI +L+LTF Y+ M +LI++ H++L P Sbjct: 486 TAFGTGIHDDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQP 545 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ + K YA+ +E IL+E + K I R+KGLGEM A QL ET MD + Sbjct: 546 PLYKLEKNKKVWYAYSDEELNNILKEVGRDQNNK--IQRYKGLGEMDAEQLWETTMDPER 603 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L +V +++ + L +T + LMG + R +FI+ A ++ ++ Sbjct: 604 RVLKKVVLDESM--LSETDVVFSTLMGDQVAPRREFIEANAKYVSNLD 649 >gi|154248675|ref|YP_001419633.1| DNA topoisomerase IV subunit B [Xanthobacter autotrophicus Py2] gi|154162760|gb|ABS69976.1| DNA topoisomerase IV, B subunit [Xanthobacter autotrophicus Py2] Length = 678 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 397/684 (58%), Positives = 501/684 (73%), Gaps = 16/684 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ S DLF + P + +P A +Y A+ I +LEGLEPVR Sbjct: 1 MS-QSDDLFGSTPRPKPAGKPAKAAAAAVPAMDA--------DYTAAHIEVLEGLEPVRR 51 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTD KALHHLF+EVIDN MDE +AG+A IEV + +G+LTV DNGRGIPVE Sbjct: 52 RPGMYIGGTDSKALHHLFAEVIDNCMDEAVAGHATFIEVQMAADGYLTVSDNGRGIPVEE 111 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALSD+L V V R T++ Sbjct: 112 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDDLEVEVTRNQTLY 171 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FS+G+P L++ ++ N+RGTR+ F PDP+IFG A F+ AR+ +M +SKAYL G Sbjct: 172 RQSFSKGVPQGKLKEVGRITNRRGTRVRFHPDPEIFGPSARFEPARVFRMARSKAYLFGG 231 Query: 241 VKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ WSCD E+ + G+PEK F FPGGL+ YL LE ++L+ S+IF+G+ +K G H Sbjct: 232 VEIRWSCDPELLKGIEGVPEKTSFRFPGGLRDYLAADLEGQTLVHSDIFSGRIQKPGGH- 290 Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G+VEWA+AW + + I+SYCNTI T +GGTHE+GLR L +G+K +AE + KR I Sbjct: 291 GSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRAVLLKGLKDHAERSGQGKRGSVI 350 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+ +LSVF+REPEF GQTK +L + +A R VE LRDPFDH+L NP++A++ Sbjct: 351 TGDDVTTGCAAMLSVFVREPEFQGQTKDRLATAEAARIVEQGLRDPFDHWLAANPVQASR 410 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LLE VI+R+EERLRR++++EV+RKTA+RKLRLPGKLADCS A G+E+FIVEGDSAGGS Sbjct: 411 LLEHVIDRAEERLRRKQEKEVSRKTAVRKLRLPGKLADCSNTEAAGSEIFIVEGDSAGGS 470 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R QAVLPLRGKILNVASA +K+ NQQ+ DL QALGC S YR+ DLRYEK Sbjct: 471 AKQARDRKTQAVLPLRGKILNVASATRDKLAQNQQLADLGQALGCGMLSHYRDADLRYEK 530 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFF+++M LIE HLFL PPL+RITQG K++YA D+ HK Sbjct: 531 VIIMTDADVDGAHIASLLVTFFFRQMPKLIEDGHLFLAVPPLYRITQGAKTLYARDDAHK 590 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +K+L++ + GKGK+E+ RFKGLGEM+ +QLKET MD RTL RV I + T D Sbjct: 591 EKLLKK-EFTGKGKVEVGRFKGLGEMMPAQLKETTMDPRTRTLQRVTIEDAEQAA--TTD 647 Query: 658 SINKLMGTKADERFKFIQERASFI 681 + +LMG + + RF FI ERA+F Sbjct: 648 LVERLMGNRPEARFAFISERAAFA 671 >gi|150387859|ref|YP_001317908.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF] gi|149947721|gb|ABR46249.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF] Length = 635 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 391/652 (59%), Gaps = 23/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY ++I Sbjct: 2 ENKIQEYGAEQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCDVI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V++ + + VVDNGRGIP+E HP+ KSTLE ++T LHAGGKF Y++SGGLHGV Sbjct: 62 DVTIYQDNSIKVVDNGRGIPIETHPQ-TGKSTLETVMTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS+ + V V + ++ Q++ RGIP++ +++ + T ITF+ D +IF Sbjct: 121 GISVVNALSEYVEVEVRKDGKLYKQRYERGIPITDVQEVGETTETG-TTITFKADSEIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + L + A+L+ +K +E + F + GG++ ++ Sbjct: 180 EIL-YVYTTLENRLREMAFLNKGIKITLRDLREE-----EVMESSFRYDGGIQEFVMHLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 NR + ++ + +K+G+ VE A+ + I SY NTI T EGGTH SG + Sbjct: 234 RNREALIDKVIYFEKQKEGS---VVEVALQYTGAYTENIFSYANTINTHEGGTHLSGFKA 290 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I +YA ++ I+++ +D+ I+SV + +P+F GQTKTKL + + + Sbjct: 291 GLTRVINEYARKNGILKEKEINLLGEDIREGLTAIISVKMADPQFEGQTKTKLGNSEMKG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE++ + +L +NP EA ++E + R +K RE RK A+ LPGKL Sbjct: 351 IVESSTSQYLEAFLEENPHEAKIIIEKSLRAQRAREAAKKARELTRRKGALENTALPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC++ +E++IVEG+SAGGSAKQ R+R+ QA+LPLRGKILNV + ++I + +I Sbjct: 411 ADCAEKDPALSEIYIVEGNSAGGSAKQGRDRATQAILPLRGKILNVEKSRLDRILGSAEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 +++ A G ++ E +RY K++IMTDADVDGAHI +LLLTFF++ M LIE +++ Sbjct: 471 RNMITAFGTGIGIEFDIEKVRYHKIVIMTDADVDGAHIRTLLLTFFFRYMKPLIELGYVY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ +G YA+ +E QKI+ + G +I R+KGLGEM QL +T M Sbjct: 531 IAQPPLYKLKKGKVENYAYSDEEMQKIIVQMG----GSADIQRYKGLGEMNPEQLWDTTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RT L+V I D N LMG K + R +FI++ + ++ ++ Sbjct: 587 NPETRTFLQVSIED----AAGADDIFNTLMGDKVEPRRQFIEQNSKYVTNLD 634 >gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17] gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae ATCC 33574] gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17] gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae ATCC 33574] Length = 656 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 255/668 (38%), Positives = 394/668 (58%), Gaps = 29/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N + +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENLNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 KNIEVTINEDNSITVQDDGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + +++GTR F PDP Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DRQGTRQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 +F + + + A+L+ ++ + ++ G +E F+ GLK +++ Sbjct: 180 VFTTTV-YKWDIIASRMRELAFLNAGIRITLRDLR--PDEEGKTREEVFHAEQGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGVP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRAALTRVLKAYADNDAQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + V+ A+ + ++YL ++P+EA K+ E V+ + R+ RK RE ++ + + Sbjct: 354 GNSEVAGAVQQAVGEALNNYLEEHPVEAKKICEKVVLAATARIAARKARESVQRKSVMSG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 + M +IE+ HL++ +PPL++ T S Y + E+ +Q ++++ + + R+K Sbjct: 534 RFMPKVIEEGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGREDDKALHTQRYK 593 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + + + + LMG + R +FI++ A Sbjct: 594 GLGEMNPEQLWETTMDPATRLLKQVNI----QNAAEADEIFSMLMGDDVEPRREFIEKNA 649 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 650 TYA-NIDA 656 >gi|225016753|ref|ZP_03705945.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum DSM 5476] gi|224950421|gb|EEG31630.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum DSM 5476] Length = 642 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 371/655 (56%), Gaps = 22/655 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + NYD + I++LEGLE VR RPGMYIG T K LHHL E++DNA+DE +AG+ I Sbjct: 2 EKLNQNYDENQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVYEIVDNAIDEALAGFCTQI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + VVDNGRGIP H K S ++ T LHAGGKF Y+++GGLHGV Sbjct: 62 DVEILPGNIIHVVDNGRGIPTGIHQK-EGISAATVVYTILHAGGKFGGGGYKVAGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ L + V I Q+F RG +E K ++ GT + F+ DP+IF Sbjct: 121 GASVVNALSEWLELKVYDGENIHYQRFERGHYDKQMEVIGKT-DRTGTEVAFKADPEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D LL + +A+L+ VK + + P E ++ GG+ ++++ Sbjct: 180 ET-EYDYDTLLTRLREQAFLNAGVKIVMADRR-----QPEPVVENLHYEGGIISFVEFIH 233 Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + + + ++ K ++ + E A+ + + I S+ N I T EGGTHE G Sbjct: 234 KRKSLETLHPDVIYLKAQEGDS---VAEVALQYNDSYNELILSFANNIHTAEGGTHEIGF 290 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR Y + ++ DD+ I+SV + E EF GQTK+KL +++ Sbjct: 291 KNALTRVFNDYGRKNNLLKEADKNLSGDDVREGLTAIISVKLTECEFEGQTKSKLGNIEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V+ + + ++ +NP A + + + R RK RE RK+A+ LPG Sbjct: 351 RALVDRMVSEKLTNFFEENPSVARSIFDKALNAQRAREAARKARELTRRKSALETASLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ TEL+IVEGDSAGGSAK R R QA+LPL GK+LNV A +++ N Sbjct: 411 KLADCSERDPALTELYIVEGDSAGGSAKSGRERKYQAILPLWGKMLNVEKARLDRVYGND 470 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++M +V ALG + LRY K++IM DADVDG+HI +LLLTFF++ M LI+Q H Sbjct: 471 KLMPVVTALGTSIGDDFDITKLRYNKIVIMADADVDGSHIRTLLLTFFFRFMRPLIDQGH 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK-HGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++++G + YA+ ++ + + L E + + K++I R+KGLGEM QL E Sbjct: 531 VYIAQPPLYKLSRGKQHRYAYSDKERNQYLSELRDGNPDAKVDIQRYKGLGEMDPEQLWE 590 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +++VE+ + + LMG K R +FI++ A ++ ++ Sbjct: 591 TTMNPENRVMIKVEMEDAV----AADEVFTILMGDKVGPRREFIEKNAQYVQNLD 641 >gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312] gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312] Length = 655 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 259/657 (39%), Positives = 378/657 (57%), Gaps = 15/657 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S+ Y A I++LEGLEPVR RPGMYIG T + LHHL EV+DN++DE +A Sbjct: 2 SEDKRSNKISNEYGAEQIQVLEGLEPVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+ + IE+ L +G + DNGRGIP + HP+ KS LE +LT LHAGGKF + Y++S Sbjct: 62 GHCDHIEIVLQSDGSALISDNGRGIPTDIHPR-TGKSALETVLTVLHAGGKFGSGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITF 209 GGLHGVGISVVNALS+ ++VTV R + F+Q+F +G+ + +K+ K K+GT I F Sbjct: 121 GGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSQNVLQSKKQTKKPFKKGTTICF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF F+ A L + AYL+G VK + ++ E E + + GG+ Sbjct: 181 KPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNKLSDGSFKE-EIYLYQGGI 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K Y+Q + I +I ++K+ + + I + N I T +GGT Sbjct: 240 KEYVQYMNAEKEAIHPDIIYVDSQKENVY-VEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H GL+ LTR A+ ++ I ++ +++ +LSV + +PEF GQTKTKL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + + V++ + + ++ NP +LE I+ R+ RE V RK+ + Sbjct: 359 GNTEVRGIVDSLIGEALTKFMEFNPGILDLVLEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILN+ K Sbjct: 419 STLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTK 478 Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N +I L+ ALG + + + LRY +V+IMTDADVDGAHI +LLLTFFY+ + Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L+E+ ++++ PPL+++ +G Y ++E + + F ++ I RFKGLGEM+ Sbjct: 539 LVEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENAN--YNIQRFKGLGEMMP 596 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL +T M+ R + RVEI L + N LMG K R +FI+ +S +D Sbjct: 597 KQLWDTTMNPQTRMMKRVEIEDAL----EADRIFNILMGDKVAPRREFIETHSSKLD 649 >gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052] gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052] Length = 635 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 262/645 (40%), Positives = 381/645 (59%), Gaps = 21/645 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY N IEV ++ Sbjct: 8 YDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCNKIEVYINE 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D+GRG+PV HPK KST+E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 68 DNSITVNDDGRGMPVGIHPKM-GKSTVEVIMTILHAGGKFGGGGYKVSGGLHGVGASVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+E VTV R I+ QK+S+G L+ L K ++ GT+ F+PD +IF + FD Sbjct: 127 ALSEECTVTVNRDGHIWQQKYSKGKVLNELTKVGD-SDQTGTQTYFKPDAEIFDEIV-FD 184 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + + A+L+ + ++ E E F++ GG+K+++ N+ + Sbjct: 185 FEILSQRLRELAFLNKGIYIRLVDKRDEKE-------EVFHYEGGIKSFVSYLNRNKVPL 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E + K +VE A+ + + I S+ N I T EGGTH G + ALTR Sbjct: 238 HEEPIYIEGVKDNI---SVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVF 294 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA+ + + DD+ G++S+ I EP+F GQTKTKL + + + V++ + Sbjct: 295 NDYAKKFGHIKENDKNFTGDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIV 354 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 + +L +NP +++ + + R RK RE+ RK+ + + LPGKLADCS Sbjct: 355 GENIGIFLEENPNIGKMIVDKALMAARARDAARKARELTRKSVLERSTLPGKLADCSSKD 414 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E++IVEGDSAGGSAKQ RNR QA+LPLRGKILNV ++I N I ++ A Sbjct: 415 PRECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAF 474 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +LI+ H+++ PPL+ Sbjct: 475 GAGIGNDFDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLY 534 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++++ K YA+ + + +L E +I R+KGLGEM ASQL +T MD KR L Sbjct: 535 KVSKSKKEYYAYSDPELESVLSELGGKDNST-DIQRYKGLGEMNASQLWDTTMDPEKRIL 593 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V I + + LMG K + R +FIQ+ A + ++ Sbjct: 594 LKVNIEDAM----AADEIFTILMGEKVEPRKEFIQQNARNVVNLD 634 >gi|284051687|ref|ZP_06381897.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca] gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39] Length = 645 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 250/651 (38%), Positives = 372/651 (57%), Gaps = 14/651 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A I++LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY IEV Sbjct: 2 TSTYSADQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVD 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + + V D+GRGIP++ H K +S LE ++T LHAGGKF Y++SGGLHGVGIS Sbjct: 62 INPDNSVRVTDDGRGIPIDTHSK-TGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R + + Q++ RG+P++ LE+ ++ GT + F+PD KIF Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQTGTSVCFKPDTKIFTTGI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + AYL+ V+ + ++ K + E + + GG+K Y+ + Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + + E+ + V + I + N I T +GGTH GL+ LTR Sbjct: 241 QALHEDTIYVSGERNNV-QVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTR 299 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + A + ++ +++ G++SV + +PEF GQTKTKL + + + V++ Sbjct: 300 TMNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDS 359 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + +L NP A +LE I+ + R+ R+ V RK+ + LPGKLADCS Sbjct: 360 LVGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCS 419 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILN+ KI N +I L+ Sbjct: 420 SRDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLI 479 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + + LRY KVIIMTDADVDGAHI +LLLTFFY+ +L+ Q +++ Sbjct: 480 TALGLGIKGEEFDSSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIAC 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ +G Y ++E+ Q+ L EF + I RFKGLGEM+ +QL +T M+ Sbjct: 540 PPLYKVERGRNHYYCYNEQQLQQQLAEFPDNAN--YTIQRFKGLGEMMPNQLWDTTMNPE 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 R++ RVEI + LMG + R +FI++ A +D D+ Sbjct: 598 TRSIKRVEIED----AAEADHIFTVLMGDRVAPRRQFIEDHAPRLDITDLD 644 >gi|325972866|ref|YP_004249057.1| DNA gyrase subunit beta [Spirochaeta sp. Buddy] gi|324028104|gb|ADY14863.1| DNA gyrase, B subunit [Spirochaeta sp. Buddy] Length = 677 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 251/670 (37%), Positives = 369/670 (55%), Gaps = 38/670 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +SAS +Y A SI++L+GLE VR RPGMYIG T + LHHL EV+DN++DE +AGY + I Sbjct: 23 ESASHSYSAGSIQVLKGLEAVRKRPGMYIGSTGIEGLHHLVYEVVDNSIDEAMAGYCSDI 82 Query: 98 EVSLDGNGF----LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 +V LD + TV DNGRGIPVE HP KS+LEI LT LHAGGKFD ++Y++SGG Sbjct: 83 QVFLDLDSEGREICTVEDNGRGIPVELHP-TEKKSSLEIALTQLHAGGKFDKNSYKVSGG 141 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS + VTV R ++ Q++S GIP + + + ++ GT ++F PD Sbjct: 142 LHGVGVSCVNALSIWMEVTVYRDGGVYRQQYSCGIPQTEVVRIGDT-DRSGTVVSFAPDY 200 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 I F+ L+ + ++L+ V + + + F GG+ ++ Sbjct: 201 SIMEQN-AFNYEVLVSRFRELSFLNKGVSITITDRR-----GDETHSQAFQSEGGISQFV 254 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 E + ++ + + EK VE A+ + ++ ++ SY N I T EGGTH + Sbjct: 255 SYLNEFKRVLVDPPISIEGEKDSI---KVEIALQYNDKYDEKVLSYVNNINTREGGTHLT 311 Query: 333 GLRVALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R L+R I + K + D+ ++SV + EP+F GQTK KL + Sbjct: 312 GFRTGLSRVINTQLQKNTKLLKKYEEKLEQSDISEGLTAVVSVKVPEPQFEGQTKMKLGN 371 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 V + + + +Y + P + +LE +I + R+ RK RE RK + L Sbjct: 372 SAVTGVVFSLVYEKLGNYFDEFPAQTEVILEKIINAALGRIAARKAREQIRKKS-EGGGL 430 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS+ E+FIVEGDSAGGSAKQ R+R QA+L L GK+LNV A K+ Sbjct: 431 PGKLADCSEKDPAKCEVFIVEGDSAGGSAKQGRDRKFQAILALWGKMLNVEKAQEYKVLG 490 Query: 510 NQQIMDLVQALGCRTRSQYRE--------------EDLRYEKVIIMTDADVDGAHIASLL 555 N ++ ++ +G +RY KVIIM DADVDG+HI +LL Sbjct: 491 NDKLQPVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADADVDGSHIRTLL 550 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 LTFF++ M LIE +++ PPL++IT G K YA+DEE + +IL+E K+ I Sbjct: 551 LTFFFRYMRPLIEAGYVYFAMPPLYKITIGKKVQYAYDEEARVRILQENNIADPSKVAIQ 610 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET M+ R + ++++ + ++ + LMG + + R FI Sbjct: 611 RYKGLGEMNPEQLWETTMNPETRLISQIKL----HDAEEADRVFSMLMGEEVEPRRAFID 666 Query: 676 ERASFIDDVG 685 A ++ ++ Sbjct: 667 ANAVYVSNLD 676 >gi|163786113|ref|ZP_02180561.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1] gi|159877973|gb|EDP72029.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1] Length = 649 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 246/655 (37%), Positives = 383/655 (58%), Gaps = 24/655 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y A SI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AG+ + I V+ Sbjct: 10 EHGYSADSIQALEGMEHVRMRPSMYIGDVGTRGLHHLVYEVVDNSIDEALAGHCDNITVT 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +T D+GRGIPV H K S LE+++T + AGGKFD +Y++SGGLHGVG+S Sbjct: 70 INEDNSITTEDDGRGIPVGLHKK-EGVSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGVS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L TV R+ ++ Q++ RG + P++ +KRGT +TF+PD IF Sbjct: 129 CVNALSEHLKATVFREGKVYEQEYERGKAMYPVKTTGDT-DKRGTTVTFKPDSTIFTQTL 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + AYL+ + + E E E F+ GLK +++ R Sbjct: 188 EYNYDTLASRLRELAYLNKGITVHLIDKRHTKEDG-SFEGETFHSKEGLKEFIKFLDATR 246 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + ++ + EK G VE A+ + + SY N I T EGGTH SG R LT Sbjct: 247 DPLMKDVIAFEGEKNGVP---VEVAMIYNTSYAENLHSYVNNINTHEGGTHLSGFRRGLT 303 Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 +KK+A+ + K + DD I+SV ++EP+F GQTKTKL + + +V Sbjct: 304 HTLKKFADSSGMLDKLKFDVAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVSASVS 363 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 A+ + YL ++P +A +++ VI ++ R +K RE+ RKT + LPGKL+DC Sbjct: 364 QAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPGKLSDC 423 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ E+++VEGDSAGG+AK R+R+ QA+LPLRGKILNV A + K+ N++I ++ Sbjct: 424 SEQNPEICEIYLVEGDSAGGTAKMGRDRAFQAILPLRGKILNVEKAMTHKVFENEEIKNI 483 Query: 517 VQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ALG ++ + LRY K++IM DAD+DG+HI +L+LTFF++ M +LIE H Sbjct: 484 FTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKELIENGH 543 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ +PPL+ + +G K YA +++ + +++++ K I R+KGLGEM A QL +T Sbjct: 544 IYIATPPLYLVKKGAKKAYAWNDDERMALMDQYGDGAK----IQRYKGLGEMNAIQLWDT 599 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ RTL +++I+ + + + LMG + R +FI++ A + ++ Sbjct: 600 TMNPEFRTLRQIQIDNGV----EADRVFSMLMGDEVPPRREFIEKNAVYA-NIDA 649 >gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302] gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735] gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302] gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735] Length = 656 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 262/668 (39%), Positives = 392/668 (58%), Gaps = 29/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ++ NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +E++L+ +G +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDVEITLNEDGSVTVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + RGTR F PDP Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETTK-RGTRQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 +F + + + AYL+ ++ + + E G +E F+ GLK +++ Sbjct: 180 VFTT-TTYKWDIVASRMRELAYLNAGIRITLTDLRPNEE--GKTRQEVFHAKDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRAALTRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + V+ A+ + +YL ++PIEA K+ E V+ + R+ RK RE ++ + + Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKSVMTG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 + M +IE HL++ +PPL++ T S Y + E+ +Q ++++ K + R+K Sbjct: 534 RFMPKVIEDGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGKEDDKSLHTQRYK 593 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + + + + LMG + R +FI++ A Sbjct: 594 GLGEMNPEQLWETTMDPKSRLLKQVTI----QNAAEADEIFSMLMGDDVEPRREFIEQNA 649 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 650 TYA-NIDA 656 >gi|325570905|ref|ZP_08146554.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus casseliflavus ATCC 12755] gi|325156309|gb|EGC68492.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus casseliflavus ATCC 12755] Length = 677 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 245/655 (37%), Positives = 355/655 (54%), Gaps = 33/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N I+ Sbjct: 5 KKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEID 64 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 65 VTIHKDNSISVRDNGRGMPVGTH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V + R + Q F G P L+K K R GT +TF+PD IF Sbjct: 123 ASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDDTIFS 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L VK + ++ P E F + G+K ++ Sbjct: 183 T-TKFSYEILAERLRESAFLLKGVKISLTDER-----GEEPIHEVFLYEEGIKEFVDYLN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E + + +++ K+ VE A + + E S+ N + T +GGTHE G++ Sbjct: 237 EEKDTL-TQVVYFSGTKEAI---EVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKT 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + A Sbjct: 293 SMTKAFNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLA 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + V+N + + +YL +N + L+ I+ E R RK RE +R RK L Sbjct: 353 RNAVDNVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLL 412 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 413 SGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILK 472 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 473 NEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEA 532 Query: 570 KHLFLISPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++++ G K YA ++ K+ ++ K + R+KGLGEM A Sbjct: 533 GKVYIALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGK----GYMLQRYKGLGEMNA 588 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 589 DQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIESHVQF 639 >gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b] gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b] Length = 660 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 263/669 (39%), Positives = 374/669 (55%), Gaps = 37/669 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY A +I +LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG + I V + Sbjct: 3 NNYGAEAITVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSVDEALAGICDKITVKI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRGIPV H KSTLE++LT LHAGGKFDN Y++SGGLHGVG+SV Sbjct: 63 LEGNIIEVSDNGRGIPVGMHK--TGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 VNALS+ L TV R IF Q + RG+P SP+E+ + GT + F+ D +IF Sbjct: 121 VNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDSAHGTVVRFKADDEIFETTV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D + L + AYL+ +K + ++ + EEF F GG+K +L ++ Sbjct: 181 -YDYSVLESRLKELAYLNKGLKIELADER----NAENVKAEEFLFEGGIKDFLNEIIDEE 235 Query: 281 -----------SLISSEIFTGKTEKKGTH---------RGTVEWAIAWCEEN-PEITSYC 319 ++ E + E + + VE A+ + + S+ Sbjct: 236 KIIDDVIYMADTMQIEEAKEVEAEDENGNIVIKQRSAKFVEVEIAMNYTTSQRETVYSFV 295 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377 N I T EGGTH SG R ALTR I A+ + + D+ V ++SV I EP Sbjct: 296 NNINTHEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEP 355 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + + V N + YL +P A K++E ++ R +K RE Sbjct: 356 QFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKVIEKMVMSKRAREAAKKARE 415 Query: 438 VN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + RK + LPGKLADCS +E+FIVEG+SAGGSAKQ R+R QA+LPLRGKI Sbjct: 416 LVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKI 475 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV +G K N +I ++ A G + + LRY K++IMTDADVDGAHI +L+L Sbjct: 476 LNVEKSGIHKALENAEIRAMITAFGAGFGEEIDLKKLRYHKIVIMTDADVDGAHIRTLML 535 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFFY+ + +LI + ++++ PPL++I G YA+ ++ +++ + G+ K I R Sbjct: 536 TFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLENEGR-KYTIQR 594 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET +D RTLL+V + N LMG K + R KFI++ Sbjct: 595 YKGLGEMNPEQLWETTLDPEVRTLLKVSMED----ASYADKMFNILMGDKVEPRRKFIED 650 Query: 677 RASFIDDVG 685 A+++ ++ Sbjct: 651 NANYVRNLD 659 >gi|192291144|ref|YP_001991749.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris TIE-1] gi|192284893|gb|ACF01274.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris TIE-1] Length = 683 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 394/683 (57%), Positives = 501/683 (73%), Gaps = 10/683 (1%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L ++ +S + P +PA + A D Y A+ I +LEGLEPVR RPGMYIG Sbjct: 5 LKASSKSKSGDDLFEGAPKSAAPKAPAKPSG-AEDGYTAADIEVLEGLEPVRRRPGMYIG 63 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 GTDEKALHHLF+EVIDN+MDE +AG+A IEV L +GFLTV DNGRGIPV+ HPKFP K Sbjct: 64 GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTADGFLTVSDNGRGIPVDPHPKFPKK 123 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S LE+I+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS L V VAR + F RG Sbjct: 124 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARGQQLHRMVFERG 183 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 P LE KV N+RGTR+ F+PD IFG KA F RL KM +SKAYL G VK W C Sbjct: 184 HPKGKLESLGKVNNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKC 243 Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 D E+ + +P ++EF+FPGGLK +L + N +L+ +IF GK+ + G H G EWA+ Sbjct: 244 DPELLKGIEDVPAEDEFHFPGGLKDFLGAAIHNDTLVHPDIFAGKSGRNGAH-GACEWAV 302 Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364 AW + + ++SYCNT+ T +GGTHESGLR AL RG+K +AE KRA SI S+D+M+ Sbjct: 303 AWTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERAGQGKRASSITSEDVMV 362 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 A +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L NP++A KLL++VIE Sbjct: 363 GAAIMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVIE 422 Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+EERLRRR+++E++RKTA++KLRLPGKLADC+ A G+ELFIVEGDSAGGSAKQAR+R Sbjct: 423 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTSTAAEGSELFIVEGDSAGGSAKQARDR 482 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 S QAVLPLRGKILNVASAG +K+ N Q+ DL+QALG T YREEDLRY ++IIMTDA Sbjct: 483 STQAVLPLRGKILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDA 542 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHIASLL+TFFY++M LI++ HL+L PPL+R+T G K+VYA D+ HK+++L++ Sbjct: 543 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKK- 601 Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664 + + K+E+ RFKGLGEM+ +QLKET MD KRT+LRV + D T +S+ +LMG Sbjct: 602 EFNANAKVEVGRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDG--TANSVERLMG 659 Query: 665 TKADERFKFIQERASFIDD--VG 685 TKA+ RF FI E+A F D + Sbjct: 660 TKAEARFAFISEKAEFASDELLD 682 >gi|191636829|ref|YP_001985995.1| DNA gyrase, B subunit [Lactobacillus casei BL23] gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang] gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23] gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang] gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei LC2W] gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei BD-II] Length = 653 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 261/667 (39%), Positives = 373/667 (55%), Gaps = 22/667 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + ++ + YDAS I++L GLE VR RPGMYIG T + LHHL E+IDN + Sbjct: 2 TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A IEV ++ + +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205 Y++SGGLHGVG SVVNALS +L VTV R + F RG +P++ GT Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F PDP IF + FD L + A+L+ +K ++ + EK F++ Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324 GGLK+Y+ E + + E + + KG TVE A+ + + ++ N I T Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE+G + ALTR I YA + + DD+ ++SV +P+F GQ Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + DA+ V+ D F+ +L+++P + +++ + S+ RL ++ RE +K Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A E+I N++I L A+G + RY K+IIMTDADVDGAHI +LLLT Y+ Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M +++ ++++ PPL+R+ QG + Y +E Q IL + K EI R+KGLG Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A+QL ET MD + R LLRV + LMG + R KFI++ A F+ Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646 Query: 682 D--DVGT 686 D ++ Sbjct: 647 DPNNIDA 653 >gi|239827049|ref|YP_002949673.1| DNA topoisomerase IV subunit B [Geobacillus sp. WCH70] gi|239807342|gb|ACS24407.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70] Length = 656 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 365/650 (56%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY N I V + Sbjct: 8 EYNDDAIQVLEGLEAVRRRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSITVLDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R I+ Q+F G +K NK GT I F+PDP IF F Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFEHGGKPVTTLEKIGTTNKTGTIIQFKPDPTIFSTTT-F 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K ++ ++ FY+ G++ +++ E++ + Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDER-------TGMRDVFYYENGIEAFVEYLNEDKDV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + + + E+ G VE+A + + E S+ N + T +GGTHE+G + A+TR Sbjct: 238 LHPVV-YFEGEQNGI---EVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 294 FNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454 + + ++L +NP +T L++ I + R RK RE R RK + L GKL Sbjct: 354 AVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ Sbjct: 474 TIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL++I++G K + YA +E ++I+++F K I R+KGLGEM A QL E Sbjct: 534 ALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFGK----GYTIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV I + + LMG K + R K+I+ +F Sbjct: 590 TTMNPETRTLIRVRIED----AARAERRVTTLMGDKVEPRRKWIEANVAF 635 >gi|163852535|ref|YP_001640578.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens PA1] gi|163664140|gb|ABY31507.1| DNA topoisomerase IV, B subunit [Methylobacterium extorquens PA1] Length = 701 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 395/690 (57%), Positives = 501/690 (72%), Gaps = 11/690 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 ++D + DLF +E+ ++ + SPA A ++A YDAS+I +LEGLEPVR Sbjct: 17 VSDPARDLFGPGAKPPPAEAERRRRLTPVAPSPAPAPETAEAGYDASAIEVLEGLEPVRR 76 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGIPV+ Sbjct: 77 RPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGSLVVTDNGRGIPVDP 136 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALSD L V VAR T++ Sbjct: 137 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDVLEVEVARNQTLY 196 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG LE +V+N+RGTR+ F PD +IFG FD RL KM +SKAYL G Sbjct: 197 RQCFSRGHAQGSLETIGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAYLFGG 255 Query: 241 VKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + E +P + FPGGL YL +E + L+ IF+GK K G+H Sbjct: 256 VEIRWRCAPALLEGLADVPAEAVHRFPGGLSDYLARDIEGKELVLDSIFSGKITKPGSH- 314 Query: 300 GTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWA+AW ++ SYCNTI T EGGTHE+GLRVAL R ++++AE KR ++ Sbjct: 315 GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHEAGLRVALLRALREHAERVNQAKRMTAV 374 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+M + +LSVFIREPEF GQTK KL +++A R VE A+RD FDH+L +P +A K Sbjct: 375 TTDDVMATCASMLSVFIREPEFQGQTKDKLATVEASRIVETAIRDAFDHWLAASPAQANK 434 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS G+E+FIVEGDSAGGS Sbjct: 435 LLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTVGSEIFIVEGDSAGGS 494 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R+ QAVLPLRGKILNVASA +K+ NQ I DL ALGC T + +RE DLRY++ Sbjct: 495 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDLTLALGCGTGANFREADLRYDR 554 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M LI++ HL+L PPL+RI+QG KS YA D+ K Sbjct: 555 VIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAIPPLYRISQGAKSAYARDDADK 614 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++I++ K+G K+EI RFKGLGEM+ +QLKET MD KRTLLRV I + + T D Sbjct: 615 ERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAILD--EARESTGD 670 Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685 ++ +LMG K + RF FI ERASF D ++ Sbjct: 671 TVERLMGNKPEARFAFITERASFADGTELD 700 >gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1] gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1] Length = 649 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A Sbjct: 6 KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V ++ + +TV+D+GRGIPV K + +E + T LHAGGKF Y++SGGL Sbjct: 66 KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V + ++ Q++ RG + L+ E+ ++ GT + F PDP+ Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D +L + A+L+ + +E E +++ GG+K+Y++ Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ +I E + E++ TVE ++ + + I S+ N I T EGGTHESG Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDI---TVEVSMQYADGYHSNILSFANNIHTYEGGTHESG 295 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + +LTR I YA + + + +D+ ++S+ +P+F GQTKTKL + + Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + + + F +L++NP +++E + S+ RL ++ RE RK A+ LP Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535 Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + QG Y EE K+LEE K + R+KGLGEM Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KR + RV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11] gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11] Length = 649 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A Sbjct: 6 KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V ++ + +TV+D+GRGIPV K + +E + T LHAGGKF Y++SGGL Sbjct: 66 KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V + ++ Q++ RG + L+ E+ ++ GT + F PDP+ Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D +L + A+L+ + +E E +++ GG+K+Y++ Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ +I E + E++ TVE ++ + + I S+ N I T EGGTHESG Sbjct: 239 HLNANKDVIFPEPVFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESG 295 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + +LTR I YA + + + +D+ ++S+ +P+F GQTKTKL + + Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + + + F +L++NP +++E + S+ RL ++ RE RK A+ LP Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535 Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + QG Y EE K+LEE K + R+KGLGEM Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KR + RV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104] gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22] gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2] gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200] gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3] gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8] gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5] gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96] gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704] gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1] gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol] gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1] gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6] gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188] gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis AR01/DG] gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98] gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712] gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613] gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1] gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248] gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855] gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134] gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860] gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109] gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411] gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470] gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635] gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512] gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102] gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516] gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis] gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104] gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22] gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2] gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200] gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3] gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8] gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5] gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96] gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704] gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1] gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol] gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1] gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6] gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188] gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG] gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98] gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712] gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613] gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1] gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76] gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411] gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109] gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860] gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134] gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855] gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248] gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512] gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102] gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635] gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516] gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470] gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137] gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000] gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017] gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027] gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141] gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244] gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012] gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031] gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043] gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312] gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645] gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302] gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341] gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342] gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346] gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B] gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630] gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A] gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62] gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus faecalis OG1RF] gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467] Length = 649 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 375/659 (56%), Gaps = 24/659 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A Sbjct: 6 KNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V ++ + +TV+D+GRGIPV K + +E + T LHAGGKF Y++SGGL Sbjct: 66 KSIQVIIEPDDSITVIDDGRGIPVGIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V + ++ Q++ RG + L+ E+ ++ GT + F PDP+ Sbjct: 125 HGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D +L + A+L+ + +E E +++ GG+K+Y++ Sbjct: 184 IFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKE-----YHYEGGIKSYVE 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ +I E + E++ TVE ++ + + I S+ N I T EGGTHESG Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDI---TVEVSMQYTDGYHSNILSFANNIHTYEGGTHESG 295 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + +LTR I YA + + + +D+ ++S+ +P+F GQTKTKL + + Sbjct: 296 FKTSLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + + + F +L++NP +++E + S+ RL ++ RE RK A+ LP Sbjct: 356 VRTVTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI N Sbjct: 416 GKLADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILAN 475 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E Sbjct: 476 EEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAG 535 Query: 571 HLFLISPPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + QG Y EE K+LEE K + R+KGLGEM Sbjct: 536 YVYIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPAS--PKPSVQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KR + RV ++ + + LMG + + R FI+E A ++ ++ Sbjct: 594 QLWETTMDPEKRLMARVSVDDAI----EADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 648 >gi|15639990|ref|NP_219443.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026229|ref|YP_001934001.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14] gi|3913790|sp|O08399|GYRB_TREPA RecName: Full=DNA gyrase subunit B gi|2102700|gb|AAB66715.1| DNA gyrase subunit B [Treponema pallidum] gi|3323330|gb|AAC65954.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018804|gb|ACD71422.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14] gi|291060363|gb|ADD73098.1| DNA gyrase, B subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 637 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 255/650 (39%), Positives = 375/650 (57%), Gaps = 24/650 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y ASSI +LEGLE VR RPGMYIG T LHHL EV+DN +DE +AGY + I V L+ Sbjct: 4 EYSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLE 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + V DNGRGIPV+ HP S LE++LT LHAGGKFD +Y++SGGLHGVG+SVV Sbjct: 64 QGNVVRVEDNGRGIPVDVHP-HEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV 122 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + VTV R + QKF+ G+PL+P+EK+ V KRGT I ++ DP IF + + Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLAPVEKRG-VSEKRGTIIRWQADPSIFKETVAY 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D LL + A+L+ V ++ ++ EF F GG++ ++ +S+ Sbjct: 182 DFDVLLTRLRELAFLNSTVVIQLRDER-----LATAKQVEFAFEGGIRHFVSYLNRGKSV 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + K VE A+ + + + S+ N I T EGGTH G + ALTR Sbjct: 237 VPERPLYIEGSKSDVL---VEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRV 293 Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + + + +R ++ +D+ +LSV I EP+F GQTKTKL + + + V Sbjct: 294 ANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLAD 455 ++ + + Y QNP TK+LE I ++ RL R+ +E R+ + + LPGKLAD Sbjct: 354 DSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLAD 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAK+ R+ QA+LPL GK+LNV +K+ +N+++ Sbjct: 414 CSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQP 473 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ LG + +RY KVIIM DADVDG+HI +LLLTFF++ + +IE +++L Sbjct: 474 IIATLGTGVGKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI K +Y + + + + LE K K + + R+KGLGEM +QL ET M+ Sbjct: 534 MPPLYRIAWSKKELYVYSDTERDEALESIGK--KSGVAVQRYKGLGEMDGTQLWETTMNP 591 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R +++V ++ + + + LMG + R KFI+E A + + Sbjct: 592 VRRKMMQVVLSDAV----EADRVFSTLMGEDVEPRRKFIEENAIYAR-LD 636 >gi|29376174|ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococcus faecalis V583] gi|227518804|ref|ZP_03948853.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104] gi|229545771|ref|ZP_04434496.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322] gi|229549961|ref|ZP_04438686.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200] gi|256853176|ref|ZP_05558546.1| topoisomerase IV B subunit [Enterococcus faecalis T8] gi|257422560|ref|ZP_05599550.1| topoisomerase IV subunit B [Enterococcus faecalis X98] gi|293382943|ref|ZP_06628861.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712] gi|293389568|ref|ZP_06634025.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613] gi|294781701|ref|ZP_06747036.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1] gi|300861193|ref|ZP_07107280.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11] gi|307270968|ref|ZP_07552251.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248] gi|307273174|ref|ZP_07554420.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855] gi|307274908|ref|ZP_07556071.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134] gi|307289156|ref|ZP_07569112.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109] gi|307291946|ref|ZP_07571815.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411] gi|312899465|ref|ZP_07758795.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470] gi|312903358|ref|ZP_07762538.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635] gi|312907586|ref|ZP_07766577.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512] gi|312910204|ref|ZP_07769051.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516] gi|312951548|ref|ZP_07770444.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102] gi|15982570|dbj|BAB69480.1| topoisomerase IV B subunit [Enterococcus faecalis] gi|29343637|gb|AAO81398.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis V583] gi|227073717|gb|EEI11680.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104] gi|229304874|gb|EEN70870.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200] gi|229309083|gb|EEN75070.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322] gi|256711635|gb|EEU26673.1| topoisomerase IV B subunit [Enterococcus faecalis T8] gi|257164384|gb|EEU94344.1| topoisomerase IV subunit B [Enterococcus faecalis X98] gi|291079608|gb|EFE16972.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712] gi|291081185|gb|EFE18148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613] gi|294451253|gb|EFG19720.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1] gi|300850232|gb|EFK77982.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11] gi|306496944|gb|EFM66492.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411] gi|306499865|gb|EFM69226.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109] gi|306508356|gb|EFM77463.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134] gi|306510159|gb|EFM79183.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855] gi|306512466|gb|EFM81115.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248] gi|310626614|gb|EFQ09897.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512] gi|310630514|gb|EFQ13797.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102] gi|310633234|gb|EFQ16517.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635] gi|311289477|gb|EFQ68033.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516] gi|311293335|gb|EFQ71891.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470] gi|315029334|gb|EFT41266.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4000] gi|315034019|gb|EFT45951.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0017] gi|315037028|gb|EFT48960.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0027] gi|315147315|gb|EFT91331.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4244] gi|315152429|gb|EFT96445.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0031] gi|315155702|gb|EFT99718.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0043] gi|315158127|gb|EFU02144.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0312] gi|315164065|gb|EFU08082.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1302] gi|315168985|gb|EFU13002.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1341] gi|315169781|gb|EFU13798.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1342] gi|315172254|gb|EFU16271.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1346] gi|315575816|gb|EFU88007.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309B] gi|315577656|gb|EFU89847.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0630] gi|315580468|gb|EFU92659.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309A] gi|323480780|gb|ADX80219.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis 62] gi|327535184|gb|AEA94018.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus faecalis OG1RF] Length = 685 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N Sbjct: 2 AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L V + R + ++F G P+ L+K K + + GT +TF PD I Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK + ++ P++E F++ G+K ++ Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + K+G VE A + + E S+ N + T +GGTHE G+ Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G KSV YA + +++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I++ F Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638 >gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae DSM 15606] gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae DSM 15606] Length = 656 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 264/668 (39%), Positives = 392/668 (58%), Gaps = 29/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ++ NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +E++L+ +G +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDVEITLNEDGSVTVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + RGTR F PDP Sbjct: 121 HGVGVSCVNALSTHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETTK-RGTRQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + + AYL+ ++ + + ++ G +E F+ GLK +++ Sbjct: 180 IFTT-TTYKWDIVASRMRELAYLNAGIRITLTDMR--HDEEGKIRQEVFHAKDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRAALTRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + +YL ++PIEA K+ E V+ + R+ RK RE RK + Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKNVMTG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 + M +IE HL++ +PPL++ T S Y + E+ +Q ++++ K + R+K Sbjct: 534 RFMPKVIEDGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYVDGKEDDKGLHTQRYK 593 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I + + + + LMG + R +FI++ A Sbjct: 594 GLGEMNPEQLWETTMDPKSRLLKQVTI----QNAAEADEIFSMLMGDDVEPRREFIEQNA 649 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 650 TYA-NIDA 656 >gi|315145098|gb|EFT89114.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2141] gi|315160386|gb|EFU04403.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0645] Length = 685 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N Sbjct: 2 AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L V + R + ++F G P+ L+K K + + GT +TF PD I Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK + ++ P++E F++ G+K ++ Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + K+G VE A + + E S+ N + T +GGTHE G+ Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G KSV YA + +++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I++ F Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638 >gi|126735157|ref|ZP_01750903.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2] gi|126715712|gb|EBA12577.1| DNA topoisomerase IV, B subunit [Roseobacter sp. CCS2] Length = 652 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 344/652 (52%), Positives = 443/652 (67%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + D+Y+A SI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN Sbjct: 7 SNKGPDDYNADSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHADYSVTIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VAR I+ Q+FSRGIPL P+EK N+RGT TF D +IF Sbjct: 127 VGASVVNALSDSLVVQVARNKEIYEQRFSRGIPLGPVEKVGSAPNRRGTTFTFHADAEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARL K +SKAYL V+ W + + E P + F+FPGGL YL+ Sbjct: 187 GS-HRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGE---TPTEATFHFPGGLSDYLKET 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L + + + F G ++K G VEWAI W + I SYCNT+ T EGGTH SG Sbjct: 243 LGTATTYADKPFAGTVDFQEKFGEPGKVEWAINWTPVRDGFIQSYCNTVPTPEGGTHVSG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL+ NK+A I DDLM ++S FIR+P F GQTK +L S A Sbjct: 303 FWAAILKGIKAYGELSGNKKAGQITRDDLMSGGCALVSCFIRDPAFVGQTKDRLSSEIAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + E A+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 363 KMTEGAVRDHFDNWLANDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DC+ GTELFIVEGDSAGGS K AR+R QA+LPL+GKILNV A S K+ N +I Sbjct: 423 TDCTSKDRVGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLTTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL +ALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI+Q HL+ Sbjct: 483 NDLCEALGVGMGTKFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY D+ K ++ + GKGKI++ RFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGAKRVYVADDAEKDAVMAK-GLGGKGKIDLQRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV ++ D DT D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPATRKLIRVTVHDDE--PGDTADLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|293568154|ref|ZP_06679490.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071] gi|291589144|gb|EFF20956.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071] Length = 692 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|293563433|ref|ZP_06677882.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162] gi|314938043|ref|ZP_07845353.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04] gi|314941971|ref|ZP_07848832.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C] gi|314948776|ref|ZP_07852148.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082] gi|314951794|ref|ZP_07854833.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A] gi|314991799|ref|ZP_07857257.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B] gi|314995840|ref|ZP_07860927.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01] gi|291604694|gb|EFF34179.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162] gi|313589944|gb|EFR68789.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01] gi|313593610|gb|EFR72455.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B] gi|313596073|gb|EFR74918.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A] gi|313599223|gb|EFR78068.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C] gi|313642618|gb|EFS07198.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04] gi|313644842|gb|EFS09422.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082] Length = 692 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL] gi|81859679|sp|Q5HJZ1|GYRB_STAAC RecName: Full=DNA gyrase subunit B gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL] Length = 644 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 378/657 (57%), Gaps = 20/657 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE R RPGMYIG T E+ LHHL E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 63 YANQIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 121 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 122 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 181 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 237 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + Sbjct: 294 DGFKRALTRVLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ Sbjct: 354 SEVRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I Sbjct: 414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NN +I ++ A G + RY K++IMTDADVDGAHI +LLLTFFY+ M LIE Sbjct: 474 NNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIE 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++TQG + Y +++ K+ E + K I+R+KGLGEM A QL Sbjct: 534 AGYVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIARYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 592 WETTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 643 >gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11] gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11] gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000] Length = 651 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 379/649 (58%), Gaps = 23/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ IEV Sbjct: 12 ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L VTV + + Q++ RG+ L+ + + RGT + F PDP+IF + Sbjct: 131 VVNALSTTLDVTVHKDGQKYFQEYHRGLVRDDLKIIGET-DLRGTTVHFVPDPEIFTETV 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L + A+L+ ++ + +E EK + F++ GG+++Y++ EN+ Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339 ++I + E G VE A+ + + + S+ N I T EGGTHE G R ALT Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + + ++ DD+ ++SV P+F GQTKTKL + + V Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + ++++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G Y RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 483 FTAMGTGFGGDYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ I G+++ Y E+ Q+ L + G+ K + R+KGLGEM QL ET Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV + + + LMG + + R +FI+ A + Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646 >gi|315150486|gb|EFT94502.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0012] Length = 685 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N Sbjct: 2 AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L V + R + ++F G P+ L+K K + + GT +TF PD I Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK + ++ P++E F++ G+K ++ Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + K+G VE A + + E S+ N + T +GGTHE G+ Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G KSV YA + +++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELSEVIDKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I++ F Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638 >gi|110598305|ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031] gi|110340113|gb|EAT58613.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031] Length = 649 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 264/666 (39%), Positives = 375/666 (56%), Gaps = 25/666 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + D + +A Y A++I++L+G+E VRMRP MYIG + LHHL E++DN++ Sbjct: 1 MQEDDILSTVAPTAPSTYGANNIQVLDGIEHVRMRPAMYIGDIHSRGLHHLVYEIVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE + G+ + I V+L+ G +TV+D GRGIPV+ HP+ KS LE+++T + AGGKFD Sbjct: 61 DETLGGFNDYIFVALNPEGSVTVIDRGRGIPVDIHPE-KQKSALELVMTVIGAGGKFDKG 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG SVVNALS+ V V R ++ Q+F RGIP + K K T+ Sbjct: 120 AYKVSGGLHGVGASVVNALSEWCEVEVYRDGNVYFQRFERGIPQGDVRVIGKTDKKG-TK 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 TF PD +IF F ++ + A+L+ + + I E F++ Sbjct: 179 TTFMPDHQIFKT-TEFRKDIIIDRMRELAFLNKELSITVQDTEGIDE--------IFHYV 229 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+K ++Q +NR + E E+ T VE A+ + + + SY N I T Sbjct: 230 GGIKEFVQFTDQNRINLLKEPIYLYGERDSTI---VEIALQYNDSYQENVFSYVNNINTH 286 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R ALTR + YA+ + + + DD ++SV + EP+F GQT Sbjct: 287 EGGTHVTGFRKALTRTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQT 346 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL + + Q VE + + + NP ++E V + R RK +E RK+ Sbjct: 347 KTKLGNSETQSIVETIVNEQLAEFAESNPNVLKMIIEKVKGAAMSREAARKAKELTRRKS 406 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS N EL+IVEGDSAGGSAKQ R+RS QA+LPL+GKILNV A Sbjct: 407 VLESSGLPGKLADCSINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKA 466 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 K+ N++I ++ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF++ Sbjct: 467 RLHKMLENEEIKTIILALGTSFGEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFR 526 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK--HGKGKIEISRFKG 619 M LIE +F+ PPL+ + G + YA D++ + I E KK GK I I R+KG Sbjct: 527 HMRSLIEAGRVFIAQPPLYLVKSGKEQQYAWDDDERNSITESMKKMQKGKANIHIQRYKG 586 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL T MD R+LL V + + + + LMG K + R +FI++ A Sbjct: 587 LGEMNPEQLWSTTMDPAHRSLLLVNVENAM----EADQVFSTLMGDKVEPRREFIEKNAR 642 Query: 680 FIDDVG 685 ++ + Sbjct: 643 YVRRLD 648 >gi|293556775|ref|ZP_06675338.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039] gi|291601107|gb|EFF31396.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039] Length = 692 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 653 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 261/667 (39%), Positives = 374/667 (56%), Gaps = 22/667 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + ++ + YDAS I++L GLE VR RPGMYIG T + LHHL E+IDN + Sbjct: 2 TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A IEV ++ + +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205 Y++SGGLHGVG SVVNALS +L VTV R + F RG +P++ GT Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F PDP IF + FD L + A+L+ +K ++ + EK F++ Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324 GGLK+Y+ E + + E + + KG TVE+A+ + + ++ N I T Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEFALQYTNDYHSTLLTFANNIHT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE+G + ALTR I YA + + DD+ ++SV +P+F GQ Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + DA+ V+ D F+ +L+++P + +++ + S+ RL ++ RE +K Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A E+I N++I L A+G + RY K+IIMTDADVDGAHI +LLLT Y+ Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M +++ ++++ PPL+R+ QG + Y +E Q IL + K EI R+KGLG Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A+QL ET MD + R LLRV + LMG + R KFI++ A F+ Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646 Query: 682 D--DVGT 686 D ++ Sbjct: 647 DPNNIDA 653 >gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 644 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA +I+ILE + VR RPGMYIG TDE+ LHHL EV+DN++DE +AGY + I V + Sbjct: 4 YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G ++V D+GRGIPV+ HP+ KS LE+++T LHAG KFD Y I+GGLHGVGI VVN Sbjct: 64 DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 122 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207 LS+ L + R I+ Q + RG P + K+ N GT I Sbjct: 123 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 182 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PD +IF F + + K + A+L+ ++ ++ +KE F + G Sbjct: 183 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEITLEDERS-------GKKEVFKYDG 234 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326 G+ +++ E + I ++ GK E+ G VE+A+ + + E ++ NTI T E Sbjct: 235 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 291 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385 GGTH SG R ALT+ I +A+ + I + +D+ ++ V P+F GQTK Sbjct: 292 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + + + V + + Y ++P AT ++ I + R+ RK RE+ R+ + Sbjct: 352 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L LPGKLADCS+ ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV A Sbjct: 412 ESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 471 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +K+ N +I L+ A+G R + LRY K+IIMTDADVDGAHI +LLLTFFY+ M Sbjct: 472 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +LIE+ H+++ PL+RI +G Y + +E +E K G + RFKGLGEM Sbjct: 532 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL +T M+ R L+RV I + + LMG + R +FI + A + ++ Sbjct: 587 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 642 Query: 685 G 685 Sbjct: 643 D 643 >gi|115524952|ref|YP_781863.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53] gi|115518899|gb|ABJ06883.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53] Length = 685 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 379/656 (57%), Positives = 490/656 (74%), Gaps = 9/656 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S + +Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A Sbjct: 33 GRRASEAGDYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHA 92 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV L +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLH+GGKFD+ YE SGGL Sbjct: 93 DFIEVELSADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGL 152 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L V VAR ++ F RG P LE KV N+RGTRI F+PD + Sbjct: 153 HGVGVSVVNALSSLLEVEVARGQQLYKMTFERGHPKGKLEDLGKVHNRRGTRIRFKPDTE 212 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYL 273 IFG KA F RL KM +SKAYL G V W CD E+ + +P ++ F+FPGGLK +L Sbjct: 213 IFGAKAAFKPQRLFKMARSKAYLFGGVVIRWKCDPELLKGLEDVPSEDSFHFPGGLKDFL 272 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + N +L+ +IF+GK+ + G H G EWA+AW + + ++SYCNT+ T +GGTHES Sbjct: 273 GAAIHNDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADADGFLSSYCNTVPTPDGGTHES 331 Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G+R AL RG+K +AE KRA S+ S+D+M+ A +LSVF+REPEF GQTK +L + + Sbjct: 332 GMRSALLRGLKDHAERVGQGKRASSVTSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAE 391 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 AQ+ VE A++DPFDH+L NP +A KLLE++IER++ERLRRR ++E++RKTA++KLRLPG Sbjct: 392 AQKIVEQAIKDPFDHWLSGNPAQANKLLEFIIERADERLRRRAEKEISRKTAVKKLRLPG 451 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC+ A G+ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNVASAG +K+ N Sbjct: 452 KLADCTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASAGKDKVVANA 511 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 Q+ DL+QALGC T + YRE+DLRY ++IIMTDADVDGAHIASLL+TFFY++M LI+ H Sbjct: 512 QLSDLIQALGCGTGANYREDDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDDGH 571 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+T G K+VYA D+ HK+++L++ + + K+++ RFKGLGEM+ +QLKET Sbjct: 572 LYLAVPPLYRLTHGAKTVYARDDAHKEELLKK-EFNANAKVDVGRFKGLGEMMPAQLKET 630 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685 MD KRTLLRV + + T DS+ +LMGTKA+ RF FI ++A F D + Sbjct: 631 TMDPAKRTLLRVNLADI--DREGTADSVERLMGTKAEARFAFISDKAEFASDEMLD 684 >gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna ATCC 53516] gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna ATCC 53516] Length = 638 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 256/653 (39%), Positives = 384/653 (58%), Gaps = 21/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR+RPGMYIG TDEK LHHL EV+DN++DE +AG +LI+ Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTDEKGLHHLVYEVVDNSIDEALAGVCDLIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + + V D+G GIPVE HPK KSTLE +LT LHAGGKF N Y+ SGGLHGVG Sbjct: 62 VTIKKDNSVIVEDDGSGIPVETHPK-TGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS L V R ++ Q+F +G ++ L ++ GT I F PD IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTELTVIKENVRGTGTTIEFMPDNTIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L K + A+L+ VK ++ ++E KE F++ GG+K++++ + Sbjct: 181 LN-FDKNVLAKRFREMAFLNKGVKIEFADERE-------GYKELFHYEGGIKSFVEYINK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E+ + EK T VE A+ + E I S+ N I T +GGTH G + A Sbjct: 233 SKKPLDHEVMYIEGEKDTT---KVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + YA ++ ++ DD+ ++SV + P+F GQTK KL + +A+ Sbjct: 290 LTRALNDYARNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTV 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 V++ + + Y +NP +++ + + RL R+ R+ V +K+ + LPGKLA Sbjct: 350 VDSVVYEHLSFYFEENPKIVKTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E+F+VEGDSAGGSAK R+ QA+LPLRGKILNV A E++ N+ +I Sbjct: 410 DCQSSDIEHNEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSNEIK 469 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A G + LRY K++IMTDADVDGAHI +LLLTF Y+ M L+E+ H+++ Sbjct: 470 AMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYI 529 Query: 575 ISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+ I +G K Y + E+ ++ LE++ + + I++ R+KGLGEM A QL +T M Sbjct: 530 AQPPLYGIIKGVKVMEYCYTEKELEEALEKYGE--RSNIKVQRYKGLGEMNAEQLWDTTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L++VEI+ + ++ + LMG + R +FI++ A + ++ Sbjct: 588 NPEHRILIKVEIDG--EDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNIDA 638 >gi|154253688|ref|YP_001414512.1| DNA topoisomerase IV subunit B [Parvibaculum lavamentivorans DS-1] gi|154157638|gb|ABS64855.1| DNA topoisomerase IV, B subunit [Parvibaculum lavamentivorans DS-1] Length = 679 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 386/686 (56%), Positives = 501/686 (73%), Gaps = 18/686 (2%) Query: 2 TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61 +DD+ DLF+ P ++ + + Y A I +LEGLEPVR R Sbjct: 9 SDDTDDLFAAAPKAAKPARAPKGAPRD------------DGTYSAKDIEVLEGLEPVRRR 56 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIGGTDEKALHHLF+EV+DN+MDE +AG+AN IEV++ +G LTV DNGRGIPV+ H Sbjct: 57 PGMYIGGTDEKALHHLFAEVLDNSMDEAVAGHANWIEVTVSEDGSLTVADNGRGIPVDPH 116 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 PKF NKS LE+ILTTLH+GGKF YE SGGLHGVG+SVVNALSD V VAR T+++ Sbjct: 117 PKFKNKSALEVILTTLHSGGKFGGKAYETSGGLHGVGVSVVNALSDRFEVEVARDQTLYT 176 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 Q ++RG+P + L K + +N+RGT+ITF PD IFG A F RL KM +SKAYL G V Sbjct: 177 QSYARGVPTTKLTDKGRTQNRRGTKITFHPDADIFGKGAHFIPKRLYKMARSKAYLFGGV 236 Query: 242 KTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 + W+C I EK P + +FPGGL YL+ + +++E FTGK + G+H G Sbjct: 237 EIRWNCAPSLIGEKDDTPVNDVLHFPGGLVDYLKASINGYDTVTAEPFTGKVSRAGSH-G 295 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 +VEWAIAW SYCNT+ T EGGTHE+GLR ALT+G+K YA++ NK+A I + Sbjct: 296 SVEWAIAWFGGGDGFLNSYCNTVPTAEGGTHEAGLRAALTKGLKAYADMVGNKKAAQIQA 355 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D++ +A +LSVFIREPEF GQTK KL S +AQR VE A+ D FDH+L P +A KLL Sbjct: 356 EDVLGTAGAMLSVFIREPEFQGQTKEKLASAEAQRLVERAIGDHFDHWLTAAPQQANKLL 415 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 +WVI+R+++RLRRR++++V RK+A RKLRLPGKLADCSQ+ A G+E+F+VEGDSAGGSAK Sbjct: 416 DWVIDRADDRLRRRQEKDVARKSATRKLRLPGKLADCSQSAADGSEIFLVEGDSAGGSAK 475 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QAR+R++QA+LPLRGKILNVASA K+ +QQI DL+QALG RT S YR+ DLRY+KVI Sbjct: 476 QARDRASQAILPLRGKILNVASASGAKLAQSQQISDLIQALGVRTGSHYRQADLRYDKVI 535 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ +LI + HL++ PPL+++TQG K++YA D+ HK + Sbjct: 536 IMTDADVDGAHIASLLITFFYRELPELIREGHLYMAVPPLYKLTQGGKTLYARDDAHKDE 595 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+GK+EISRFKGLGEM+ +QLKET M KRTL+RV + + K+T +I Sbjct: 596 LLKA-EFSGRGKVEISRFKGLGEMMPAQLKETTMARGKRTLMRVVVPEAE--AKETSGAI 652 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 +LMG K + RF+FIQE A+F D+ Sbjct: 653 ERLMGNKPELRFQFIQEHAAFAHDLD 678 >gi|315027216|gb|EFT39148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2137] Length = 685 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 242/657 (36%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N Sbjct: 2 AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L V + R + ++F G P+ L+K K + + GT +TF PD I Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK + ++ P++E F++ G+K ++ Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + K+G VE A + + E S+ N + T +GGTHE G+ Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G KSV YA + +++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I++ F Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638 >gi|293570285|ref|ZP_06681354.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980] gi|291609692|gb|EFF38953.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980] Length = 692 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|116493579|ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei ATCC 334] gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334] Length = 653 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 261/667 (39%), Positives = 372/667 (55%), Gaps = 22/667 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + ++ + YDAS I++L GLE VR RPGMYIG T + LHHL E+IDN + Sbjct: 2 TDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGI 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A IEV ++ + +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 DEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSK-TGRPALETVYTVLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGT 205 Y++SGGLHGVG SVVNALS +L VTV R + F RG P++ GT Sbjct: 121 GYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNMPMKVIGTAPEHEHGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F PDP IF + FD L + A+L+ +K ++ + EK F++ Sbjct: 181 KVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHY 235 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324 GGLK+Y+ E + + E + + KG TVE A+ + + ++ N I T Sbjct: 236 EGGLKSYVDFLTEKKENLLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE+G + ALTR I YA + + DD+ ++SV +P+F GQ Sbjct: 293 YEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + DA+ V+ D F+ +L+++P + +++ + S+ RL ++ RE +K Sbjct: 353 TKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV Sbjct: 413 SGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A E+I N++I L A+G + RY K+IIMTDADVDGAHI +LLLT Y+ Sbjct: 473 ASMERILANEEIRTLFTAMGTGFGQDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M +++ ++++ PPL+R+ QG + Y +E Q IL + K EI R+KGLG Sbjct: 533 YMRPVLDAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPS--PKPEIQRYKGLG 590 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A+QL ET MD + R LLRV + LMG + R KFI++ A F+ Sbjct: 591 EMDANQLWETTMDPDNRRLLRVS----PKDAEAADGVFEMLMGDHVEPRRKFIEDNAVFV 646 Query: 682 D--DVGT 686 D ++ Sbjct: 647 DPNNIDA 653 >gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254] gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254] Length = 660 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 264/669 (39%), Positives = 373/669 (55%), Gaps = 37/669 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY A +I +LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG + I V + Sbjct: 3 NNYGAEAITVLEGLEAVRKRPGMYIGSTSARGLHHLVWEIVDNSVDEALAGICDKITVKI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRGIPV H KSTLE++LT LHAGGKFDN Y++SGGLHGVG+SV Sbjct: 63 LEGNIIEVSDNGRGIPVGMHK--TGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDKA 220 VNALS+ L TV R IF Q + RG+P SP+E+ + GT + F+ D +IF Sbjct: 121 VNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDGTHGTVVRFKADDEIFETTV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D + L + AYL+ +K + ++ + EEF F GG+K +L ++ Sbjct: 181 -YDYSVLESRLKELAYLNKGLKIELADER----NAENVKAEEFLFEGGIKDFLNEIIDEE 235 Query: 281 -----------SLISSEIFTGKTEKK---------GTHRGTVEWAIAWCEEN-PEITSYC 319 ++ E + E + G VE A+ + + S+ Sbjct: 236 KIIDDVIYMADTMQIEEAKEVEAEDENGNTVIKQRGAKFVEVEIAMNYTTSQRETVYSFV 295 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREP 377 N I T EGGTH SG R ALTR I A+ + + D+ V ++SV I EP Sbjct: 296 NNINTHEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEP 355 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + + V N + YL +P A K++E + R +K RE Sbjct: 356 QFEGQTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKKARE 415 Query: 438 VN-RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + RK + LPGKLADCS +E+FIVEG+SAGGSAKQ R+R QA+LPLRGKI Sbjct: 416 LVLRKNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKI 475 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV +G K N +I ++ A G + + LRY K++IMTDADVDGAHI +L+L Sbjct: 476 LNVEKSGVHKALENAEIRAMITAFGAGFGEEMDLKKLRYHKIVIMTDADVDGAHIRTLML 535 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFFY+ + +LI + ++++ PPL++I G YA+ ++ +++ + G+ K I R Sbjct: 536 TFFYRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLEGEGR-KYTIQR 594 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET +D RTLL+V + N LMG K + R KFI++ Sbjct: 595 YKGLGEMNPEQLWETTLDPEVRTLLKVSMED----ASYADKMFNILMGDKVEPRRKFIED 650 Query: 677 RASFIDDVG 685 A+++ ++ Sbjct: 651 NANYVRNLD 659 >gi|197105032|ref|YP_002130409.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1] gi|196478452|gb|ACG77980.1| topoisomerase IV, subunit B [Phenylobacterium zucineum HLK1] Length = 684 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 369/691 (53%), Positives = 469/691 (67%), Gaps = 14/691 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ S S + P + Y A+ I +LEGLEPVR Sbjct: 1 MSPKSTAQASLFDEALNPAPAAPLAESHEPRPDPAVVGVKTSGYSAADIEVLEGLEPVRK 60 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDE+ALHHLF+EV+DNAMDE +AG+A +IEVSLD +G LTV D+GRGIPV+ Sbjct: 61 RPGMYIGGTDERALHHLFAEVLDNAMDEAVAGHAKVIEVSLDADGALTVRDDGRGIPVDP 120 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPK P KS LE+I+T LH+GGKF YE SGGLHGVG+SVVNALS+ + VTV + + Sbjct: 121 HPKHPGKSALEVIMTVLHSGGKFSGKAYETSGGLHGVGVSVVNALSERVEVTVFKDGFEW 180 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q F+RG PL +EK R +GT I+F PDP IFGD A F ARL +M +SKAYL G Sbjct: 181 RQAFTRGKPLGGIEKIGPTRK-KGTAISFLPDPVIFGDGAAFKPARLYRMARSKAYLFGG 239 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 V+ W CD P + F FP GL +L +++ ++ E FTG+ E+ G G Sbjct: 240 VEIRWKCDPARIHD-QTPAEAVFRFPNGLADFLAERIKGLETVTPEPFTGRYERPGEA-G 297 Query: 301 TVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355 VEWAIAW E + + SYCNT+ T EGGTHESGLR ALT+G+K+YAEL KR Sbjct: 298 KVEWAIAWTPAGFGEADSFMQSYCNTVPTPEGGTHESGLRAALTKGLKQYAELVGEKRGG 357 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 I +DD++ A ++SVFIR+PEF GQTK KL S +AQR VE AL DPFDH+L P A Sbjct: 358 LITADDVVAQAGALVSVFIRDPEFQGQTKEKLSSTEAQRLVEKALADPFDHWLTAQPKAA 417 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 LL++V+ER+EERL+RR+ +EV R +A RKLRLPGKLADC+ N G ELF+VEGDSAG Sbjct: 418 GALLQFVVERAEERLKRRRDKEVARASATRKLRLPGKLADCAGNAIDGAELFLVEGDSAG 477 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQAR+R NQA+LPLRGKILNVASA ++K N+++ DL+ ALG + S+++E+DLRY Sbjct: 478 GSAKQARDRKNQAILPLRGKILNVASASTDKFGGNKELSDLLLALGVQPGSKFKEDDLRY 537 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595 E++IIMTDADVDGAHIASLL+TFF++ M D+I L+L PPL+RI+ G K+VYA D+ Sbjct: 538 ERIIIMTDADVDGAHIASLLITFFFRTMPDMIRAGRLYLALPPLYRISHGGKAVYARDDA 597 Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 H+ ++L K K EISRFKGLGEM+ +QLKET MD RTL RV + + +++D Sbjct: 598 HRDELLATEFK--GKKPEISRFKGLGEMMPNQLKETTMDPKTRTLARVTLPRAEETVED- 654 Query: 656 QDSINKLMGTKADERFKFIQERASF-IDDVG 685 + LMG K + RF+FIQE A F D+ Sbjct: 655 --LVEALMGRKPELRFRFIQENAEFAAADLD 683 >gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310] gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310] Length = 657 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 264/669 (39%), Positives = 390/669 (58%), Gaps = 30/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENQNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDIEVTINDDESITVQDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ RG L P++ + N RGTR F PD Sbjct: 121 HGVGVSCVNALSSHMTSQVFRDGKIYQQEYERGKALYPVKVIGET-NLRGTRQQFWPDGS 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + A+L+ ++ + + E G E F+ GLK +++ Sbjct: 180 IFTTTH-FQWDIIARRMRELAFLNAGIRITLTDLRPNEE--GKTRTEVFHAKDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRAALTRTLKTYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + +YL ++P EA ++ E V+ + R+ RK RE RK + Sbjct: 354 GNSEVSGAVQQAVGEALTNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNVMSG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617 + M +IE+ HL++ +PPL++ T + S Y + E+ +Q ++++ + I R+ Sbjct: 534 RFMPKIIEEGHLYIATPPLYKCTYKNKASEYCYTEQQRQAFIDKYAQGEEDSKSIHTQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET MD R L +V I + D + + LMG + R +FI++ Sbjct: 594 KGLGEMNPEQLWETTMDPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEQN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147] gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147] Length = 651 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 381/649 (58%), Gaps = 23/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ IEV Sbjct: 12 ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L VTV + + Q++ RG+ L+ + ++RGT + F PDP+IF + Sbjct: 131 VVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHFVPDPEIFTETV 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L + A+L+ ++ + +E EK + F++ GG+++Y++ EN+ Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339 ++I + E G VE A+ + + + S+ N I T EGGTHE G R ALT Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + + ++ DD+ ++SV P+F GQTKTKL + + V Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + ++++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + Y RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 483 FTAMGTGFGADYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ I G+++ Y E+ Q+ L + G+ K + R+KGLGEM QL ET Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV + + + LMG + + R +FI+ A + Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646 >gi|288801620|ref|ZP_06407062.1| DNA gyrase, B subunit [Prevotella melaninogenica D18] gi|288335662|gb|EFC74095.1| DNA gyrase, B subunit [Prevotella melaninogenica D18] Length = 655 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 264/668 (39%), Positives = 383/668 (57%), Gaps = 30/668 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENPENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 QNIEVTINEDNSITVEDDGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ + +K GTR F PDP+ Sbjct: 121 HGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDPE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + A + + + AYL+ +K S + E E F+ GLK +++ Sbjct: 180 IFTTTV-YQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKT-RTEVFHAKDGLKEFVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ KTEK+ +E A+ + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKTEKQNIP---IEVAVMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 FRAALTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + YL ++P EA + VI + R+ RK RE RK + Sbjct: 355 GNSEVSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 + M +IEQ HL++ +PPL++ T S Y + E+ +Q ++++ I R+K Sbjct: 535 RYMPKVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYANGDEEDKAIHTQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD R L +V I D+ D + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPKTRLLKQVTIENDV------DDIFSMLMGDDVEPRREFIEKNA 648 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 649 TYA-NIDA 655 >gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12] gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12] Length = 635 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 275/650 (42%), Positives = 387/650 (59%), Gaps = 22/650 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + D Y A SI+ILEG E VR RPGMYIG T + LHHL E++DN++DEV+AGY + I Sbjct: 4 TKKDKYTADSIQILEGTEAVRRRPGMYIGDTGVRGLHHLIFELVDNSIDEVMAGYCDYIL 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRGIPV+ HP+ K LE++LTTLHAGGKF NS Y+ISGGLHGVG Sbjct: 64 VELKKDGAVVVADNGRGIPVDIHPQA-KKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L V V R IF Q + RG P++PL K + +K GT+I F PDP+IF Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQVYERGKPITPLTVKGET-DKTGTKIKFYPDPEIFET 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + + A+L+ +V ++ F + GGL +++ + Sbjct: 182 -TKFDYDIVANRLRELAFLNPKVTIELRDER-------TGRSNIFKYEGGLLEFIEYLSK 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + E +++ + + I SY N I T EGGTH +G R AL Sbjct: 234 GKEVLHEPIYMEREEGNLILEIVMQYNSGY---DELILSYVNNIHTIEGGTHVTGFRTAL 290 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 TR + +A K S+ DD+ I+SV + +P+F GQTKTKL + + ++ VE Sbjct: 291 TRVVNNFARSWGLWKENESLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + + Y +NP ++ +IE R RK RE+ R+ + + LPGKLADC Sbjct: 351 KVVEEELTEYFSKNPDTGKLIITKIIEAYRARQAARKARELVRRKSLLESTLLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS-EKIRNNQQIMD 515 S+ ELFIVEG+SAGGSAKQAR+R QA+LPLRGKILNV A KI ++++I Sbjct: 411 SEKDPAKCELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKA 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +LG + LRY K+IIMTDADVDGAHI +LLLTFFY+ LIE ++++ Sbjct: 471 IIASLGTGIGQDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + +G + YA+ EE K++IL+E+ + I R+KGLGEM QL+ET MD Sbjct: 531 QPPLYLLRKGKEERYAYSEEEKEEILKEWG--YPENVYIQRYKGLGEMDPEQLRETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+V I L + + + LMG +ER FI+++A F+ ++ Sbjct: 589 QKRILLQVTIEDAL----EAERLFSILMGNNVEERRNFIEQKAKFVRNLD 634 >gi|289565127|ref|ZP_06445580.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF] gi|294614810|ref|ZP_06694705.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636] gi|294617489|ref|ZP_06697120.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679] gi|289163134|gb|EFD10981.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF] gi|291592272|gb|EFF23886.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636] gi|291596229|gb|EFF27491.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679] Length = 692 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + +P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEVPVKEIFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|219851686|ref|YP_002466118.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c] gi|219545945|gb|ACL16395.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c] Length = 665 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 250/680 (36%), Positives = 372/680 (54%), Gaps = 52/680 (7%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +++YDAS I +LEGL+PVR RP MYIG TD + LHHL EV+DNA+DE +AG+ +LI ++ Sbjct: 2 TESYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNAVDEALAGFCDLISIT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G TV DNGRGIPV+ K KS LE +LT LHAGGKFD +TY++SGGLHGVG+S Sbjct: 62 INRDGSCTVDDNGRGIPVDKMQKN-GKSALETVLTILHAGGKFDKNTYQVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------------- 199 VVNALS L V R + +F++G +SPL ++ Sbjct: 121 VVNALSVSLVADVFRDGNRYRMEFAQGKVVSPLSVHKETLSELLERYRRRYRSEPPREVE 180 Query: 200 ----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 GT ITF+PD IF FD L+ + A+L+ + + + Sbjct: 181 TKEALFADEGAKLSGTIITFQPDDSIFET-VTFDYDVLVHRLREMAFLNRGITIRITDLR 239 Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309 + F++ GGL+ ++Q ++ R ++ ++ K ++ VE A+ + Sbjct: 240 SGDKDE-------FHYDGGLREFVQYLIDGREVLHPDVIDLS-RKDEENKLEVEVALQYT 291 Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISA 366 + + ++ N++ T EGGTH G R A+TR I A + ++ +D+ Sbjct: 292 QSYTETVYTFVNSVNTREGGTHLEGFRSAITRAINNSARKANLIKNNTLTLRGEDVREGL 351 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 ++S+ + P+F GQTK +L + + + V++ + Y +NP + E + Sbjct: 352 TAVISIKLANPQFEGQTKMRLGNSNVRGIVDSLVYQSLSEYFEENPKSIAAIFEKATVAA 411 Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 + R R RE+ R+ + + LPGKLADCS+ +E++IVEGDSAGGSAKQ RNR Sbjct: 412 QAREAARNARELARRKSTLESSGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRNRR 471 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LPLRGKILNV A K+ + +I L+ A+G + RY +++MTDAD Sbjct: 472 FQAILPLRGKILNVEKATQHKMIKSVEIQVLISAIGAGIGDRMDANRARYHHIVLMTDAD 531 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 VDGAHI +LLLTFFY+ M +LIE+ ++++ PPLFRI +G + Y + EE Q+I EF Sbjct: 532 VDGAHIQTLLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEF- 590 Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 G + + R+KGLGEM A QL ET M+ + R L ++ I + KLMG Sbjct: 591 --GDKGVTVQRYKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGY----ANEIFEKLMGE 644 Query: 666 KADERFKFIQERASFIDDVG 685 R FI A + ++ Sbjct: 645 DVSARKNFILRHAKEVTNLD 664 >gi|288929798|ref|ZP_06423641.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288328899|gb|EFC67487.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 657 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 261/668 (39%), Positives = 395/668 (59%), Gaps = 30/668 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 NQ+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY + Sbjct: 3 ENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCS 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLH Sbjct: 63 NIEVTINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL P++ + +KRGTR F PDP I Sbjct: 122 GVGVSCVNALSSRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDPSI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + + AYL+ VK + + ++ G E F+ GLK +++ Sbjct: 181 FTTTV-YRWDIIASRMRELAYLNAGVKITLTDLR--PDENGKTRTETFHAKDGLKEFVRY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +R+ + ++ KTEK+ +E A+ + + I SY N I T EGGTH +G Sbjct: 238 VDRHRTHLFDDVIYLKTEKQNIP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGF 294 Query: 335 RVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 R+ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 RMALTRTLKAYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLG 354 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447 + + V+ A+ + +YL ++P EA + + VI + R+ RK RE ++ + Sbjct: 355 NSEVSGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGG 414 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV K+ Sbjct: 415 GLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKV 474 Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY+ Sbjct: 475 FEAESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYR 534 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK--HGKGKIEISRFK 618 M +I++ HL++ +PPL+ T K Y ++E+ +Q ++++ + I + R+K Sbjct: 535 FMPRIIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYGEGQEDNKSIHVQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD +KR L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPSKRLLKQVTI----QNAADADEIFSMLMGDDVEPRREFIEQNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|148654235|ref|YP_001274440.1| DNA gyrase subunit B [Roseiflexus sp. RS-1] gi|148566345|gb|ABQ88490.1| DNA gyrase subunit B [Roseiflexus sp. RS-1] Length = 645 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 369/648 (56%), Gaps = 23/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD + I++LEG+E VR RPGMYIG TD LH + EV+DN++DEV+AG A +EV++ Sbjct: 14 YDENQIQVLEGMEAVRRRPGMYIGPTDVNGLHTMVREVVDNSVDEVMAGRATTVEVTIHR 73 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV D+G GIP HPK STL++++T LHAGGKFDN +Y++S GLHGVG+S VN Sbjct: 74 DGSVTVADDGYGIPTGPHPKL-GVSTLQVVMTVLHAGGKFDNKSYKVSSGLHGVGVSAVN 132 Query: 164 ALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 ALS + V V R + Q++ G+P ++K RGT F PD I Sbjct: 133 ALSAYMRVDVHNARDGMHYFQEYRCGVPQCEVQKVGPTTR-RGTITRFLPDTTIIQTL-D 190 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + AYL+ ++ + +++ E FYF GG+++Y++ ++R+ Sbjct: 191 YNFKTLAQRFREMAYLNKGLRFKFVDERDGNE-------VNFYFEGGIRSYVRHLNKDRN 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339 ++ + F + VE A+ + E ++ N I +GG H +G R ALT Sbjct: 244 VLHKQPFYVERIVDDVM---VEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFRSALT 300 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ DD+ ++SV +R+P+F+ QTK KLVS A V Sbjct: 301 RVINAYARSKGLLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPAASGAVN 360 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 D F +L +NP EA +++E I + R+ +K RE RK+A+ LPGKLADCS Sbjct: 361 TVFGDAFSAWLEENPQEARRIIEKCIAAARTRIAVQKVRETARKSAMEGFSLPGKLADCS 420 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV + +K+ +N ++ L+ Sbjct: 421 DTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNEVKALI 480 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G Q+ LRY ++I+M DADVDG+HI +LLLTFF++ M +I HL+L P Sbjct: 481 TAIGAGVGDQFDPAKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQP 540 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G Y + + + L + K I+R+KGLGEM A+QL ET M+ Sbjct: 541 PLYRIVHGKTEKYVFTDAERDQYLATLSSSERNKATITRYKGLGEMNAAQLWETTMNPLN 600 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V + + ++ LMG R +FIQ A + ++ Sbjct: 601 RLLLQVTLED----AQQADETFTMLMGDLVPPRKRFIQTHALEVRNLD 644 >gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501] gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501] Length = 642 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 376/653 (57%), Gaps = 19/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY A I++LEGL+PVR RPGMYIG T + LHHL EV+DN++DE +AGY IE Sbjct: 2 TKKSNYGAEQIQVLEGLDPVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + ++ +G +TV DNGRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVG Sbjct: 62 IDINADGSITVTDNGRGIPTDVHP-TTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS+ + V V R N I +Q++ RGIPL L+ K ++ GT ++F PD +IF Sbjct: 121 ISVVNALSEWVVVNVWRDNNIHTQRYERGIPLGSLDTKPDKKHSTGTSVSFLPDIQIFSG 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + L + AYL+ VK ++ ++ P E + + GG+K Y+ Sbjct: 181 GIEFDYSTLAGRLKELAYLNAGVKITFTDHRK-----EEPYNETYCYEGGIKEYVTYMCR 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +I EK GT + V + + + N I T +GGTH GL+ L Sbjct: 236 DKDPLHQDIIYVSGEKNGT-QVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294 Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + A + ++ +++ G++SV + EPEF GQTKTKL + + + V Sbjct: 295 TRTMNNVARKRNKLKENDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 ++ + + YL NP A ++E ++ + R+ RE V RK+ + LPGKLAD Sbjct: 355 DSLVGEVLTEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+N+ KI N +I Sbjct: 415 CSSRDPEESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQS 474 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + + + E LRY +++IMTDADVDGAHI +LLLTFFY+ L++Q ++++ Sbjct: 475 LITALGLGIKGEEFDSEQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+++ +G +Y ++E Q+ + + I RFKGLGEM+ +QL ET M+ Sbjct: 535 ACPPLYKVERGRNHMYCYNERQLQEHINSLPNNAN--YTIQRFKGLGEMMPTQLWETTMN 592 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA--SFIDDVG 685 R++ +VEI + LMG + R +FI+ + D+ Sbjct: 593 PETRSMKQVEIED----AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLD 641 >gi|126730950|ref|ZP_01746759.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37] gi|126708666|gb|EBA07723.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37] Length = 652 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 347/651 (53%), Positives = 448/651 (68%), Gaps = 10/651 (1%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN I Sbjct: 8 TAVEPTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANRI 67 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L + + + DNGRGIP++ HPKFP KS LE+IL TLHAGGKF YE SGGLHGV Sbjct: 68 EVTLRADHAIEIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDAYETSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALSD + V VA+ ++ Q+FSRGIPL P+EK N+RGT TF D IF Sbjct: 128 GASVVNALSDSMVVQVAKNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTTTFHADEDIF- 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ARL KM +SKAYL V+ W + + E P + F+FPGGL YL L Sbjct: 187 GHHRFKPARLFKMVRSKAYLFSGVEIRWKSEIDDKE---TPTEATFHFPGGLSDYLTETL 243 Query: 278 ENRSLISSEIFTGKTEKKGTHR--GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGL 334 S + F G + + + G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 244 GTASTYADAPFGGVVDFRERFQVPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGF 303 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+ +GI+ Y EL NK+A +I DDLM ++S FIREPEF GQTK +L + +AQR Sbjct: 304 WAAILKGIRAYGELVNNKKASNITRDDLMTGGCALVSCFIREPEFVGQTKDRLATTEAQR 363 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 VENA+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 364 LVENAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLT 423 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ GTE+FIVEGDSAGGSAK AR+R QA+LPL+GKILNV A S K+ +N +I Sbjct: 424 DCTAKSREGTEIFIVEGDSAGGSAKGARSRETQALLPLKGKILNVLGAASNKLTSNAEIR 483 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 DL +ALG +++ +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M LI+Q HL+L Sbjct: 484 DLCEALGVSLGTKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDQGHLYL 543 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+TQG K +Y D+ K++ L + GKGKI++ RFKGLGEM A LKET MD Sbjct: 544 ACPPLYRLTQGAKRLYVADDAAKEEALAK-GLGGKGKIDVQRFKGLGEMDAKDLKETTMD 602 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 N RTL+RV I++D +T D + +LMG K + RF++IQE A F ++ Sbjct: 603 PNTRTLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFAVELD 651 >gi|227551202|ref|ZP_03981251.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|293377175|ref|ZP_06623383.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1] gi|227179670|gb|EEI60642.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|292644195|gb|EFF62297.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1] Length = 692 Score = 611 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 13 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 130 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 131 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTI 190 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 191 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDY 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 245 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 300 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 301 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 360 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 361 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 420 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 421 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 480 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 481 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 540 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 541 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 596 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 597 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 649 >gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528] gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528] Length = 637 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 378/652 (57%), Gaps = 22/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + I Sbjct: 3 QEKKQTYDENQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNSIDEALAGYCDKI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + +TV DNGRG+PV H K K T+E+I+T LHAGGKF Y++SGGLHGV Sbjct: 63 NVIIHKDNSITVTDNGRGMPVGMHHKM-KKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ V V R++ I+ Q F RG S L+ GT+I F+PD +IF Sbjct: 122 GASVVNALSEICEVEVKRESHIWRQVFKRGKVASGLDIIGDSEEH-GTKIHFKPDAEIFD 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + + A+L+ +K +++ E E F++ GG+K+++ Sbjct: 181 EI-EYDYDTLAQRLRELAFLNKGIKIRLEDERDDKE-------EIFHYEGGIKSFVTYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ I E + +K +VE AI + + I ++ N I T EGGTH +G + Sbjct: 233 RNKQPIHKEPIYVEGKKDD---YSVEIAIQYNDGYTENIFAFANNIDTVEGGTHLAGFKS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR YA+ + ++ +D+ ++SV + +P+F GQTKTKL + + + Sbjct: 290 ALTRVFNDYAKKFGILKENDKNLSGEDIREGLTAVISVKLVDPQFEGQTKTKLGNSEVRG 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + +++L +NP A +L+ + S R RK RE RK+ + LPGKL Sbjct: 350 IVDSIMGESLNNFLQENPQVAKMILDKSLMASRAREAARKARELTRRKSILENTSLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS E+++VEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI ++I Sbjct: 410 ADCSSKDPSECEIYLVEGDSAGGSAKQGRNRKFQAILPLRGKIMNVEKQRLDKILGYEEI 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + +RY K+IIMTDADVDGAHI +LLLTFF++ M +L+E+ H++ Sbjct: 470 RAMITAFGAGIGKDFDVNKIRYNKIIIMTDADVDGAHIRTLLLTFFFRYMKELVEKCHVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ +G K YA+ ++ +L E ++I R+KGLGEM + QL +T M Sbjct: 530 IAQPPLYRVAKGKKEYYAYSDDELDVLLTEIGGKD-SNVDIQRYKGLGEMDSEQLWDTTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTL++V + + + LMG K + R FIQE A + ++ Sbjct: 589 NPETRTLIQVNVEDTM----AADEIFTILMGDKVEPRRNFIQENAKKVVNLD 636 >gi|295103719|emb|CBL01263.1| DNA gyrase subunit B [Faecalibacterium prausnitzii SL3/3] Length = 664 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 241/671 (35%), Positives = 371/671 (55%), Gaps = 31/671 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + A+ + Y+AS I++L+GLE VR RPGMYIG T E+ LHHL E++DNA+DE +A Sbjct: 7 TSTNADTATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149 GY + IEV + + + V DNGRGIPV+ + ++ T LHAGGKF +NS Y+ Sbjct: 67 GYCDHIEVKILKDNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 ++GGLHGVG SVVNA S+ L V V R + Q F RG P L+ V GTR+T Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGALKCIGTVAEGVTGTRVT 185 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEK 260 F+PDP++F D +D L K + +++L+ VK + ++ + E Sbjct: 186 FKPDPEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRS 245 Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E + GG+K+++ E R ++ + K + RG E A+ + + S Sbjct: 246 EVMCYEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTD---RGVAEIALQYNSSYNELLLS 302 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N + T +GGTHE G + +LTR Y + ++ D+ + ++SV ++ Sbjct: 303 FANNVNTPDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434 E EF GQTK KL + + + V N + + +NP A + + ++ Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 + V RK+A+ R+PGKLADC + TE+FIVEGDSAGGSAK R+ + QA+LPL G Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 K+LNV A ++KI N ++M +V ALGC ++ LRY+KV IM DADVDG+HI +L Sbjct: 483 KMLNVEKARADKIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 +LTFF++ M LIEQ H+++ PPLF++ +G YA+++ + +E ++ Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 +R+KGLGEM QL ET M+ + R ++++ I + ++ LMG + + R +FI Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653 Query: 675 QERASFIDDVG 685 + A + + Sbjct: 654 ETNAQYAK-LD 663 >gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 648 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA +I+ILE + VR RPGMYIG TDE+ LHHL EV+DN++DE +AGY + I V + Sbjct: 8 YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G ++V D+GRGIPV+ HP+ KS LE+++T LHAG KFD Y I+GGLHGVGI VVN Sbjct: 68 DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207 LS+ L + R I+ Q + RG P + K+ N GT I Sbjct: 127 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 186 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PD +IF F + + K + A+L+ ++ ++ +KE F + G Sbjct: 187 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEIALEDERS-------GKKEIFKYDG 238 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326 G+ +++ E + I ++ GK E+ G VE+A+ + + E ++ NTI T E Sbjct: 239 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 295 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385 GGTH SG R ALT+ I +A+ + I + +D+ ++ V P+F GQTK Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 355 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + + + V + + Y ++P AT ++ I + R+ RK RE+ R+ + Sbjct: 356 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 415 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L LPGKLADCS+ ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV A Sbjct: 416 ESLDLPGKLADCSEENPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 475 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +K+ N +I L+ A+G R + LRY K+IIMTDADVDGAHI +LLLTFFY+ M Sbjct: 476 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 535 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +LIE+ H+++ PL+RI +G Y + +E +E K G + RFKGLGEM Sbjct: 536 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL +T M+ R L+RV I + + LMG + R +FI + A + ++ Sbjct: 591 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|209964673|ref|YP_002297588.1| DNA topoisomerase IV subunit B [Rhodospirillum centenum SW] gi|209958139|gb|ACI98775.1| DNA topoisomerase IV, B subunit, putative [Rhodospirillum centenum SW] Length = 663 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 360/657 (54%), Positives = 456/657 (69%), Gaps = 8/657 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 D Y A I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+A Sbjct: 7 NTARKQDTYSAQDIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHAT 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I++ L +G +TV DNGRGIPV+ HP++P KS LE+ILTTLH+GGKF Y SGGLH Sbjct: 67 RIDMELTADGTVTVRDNGRGIPVDEHPRYPGKSALEVILTTLHSGGKFSGKVYATSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG +VVNALSD L V VAR +++Q++ RG+PL PL V N+RGT ++F PDP I Sbjct: 127 GVGSAVVNALSDRLRVEVARDRQLWTQEYCRGVPLGPLTNVGPVHNRRGTVVSFHPDPLI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQ 274 FGD A F RL +M +SKAYL V+ WSCD + +P E +FP GL YL Sbjct: 187 FGDGAVFKPERLYRMCRSKAYLYRGVEIRWSCDPALLPADGSVPAAETQHFPNGLLDYLT 246 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 L R+ ++ + F G+ E G VEWAIAW E++ + YCNTI T GGTHE G Sbjct: 247 GTLRQRATVTPQAFAGQAEFPNEA-GRVEWAIAWPEDDEGFSHTYCNTIPTPLGGTHEQG 305 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LR ALTR +K Y EL NKRA + +DD+M A+ +LSVF+R+P+F GQTK +LVS +AQ Sbjct: 306 LRAALTRALKGYGELVGNKRAAGVTADDVMDGAMVLLSVFVRDPQFQGQTKERLVSPEAQ 365 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R + ++D FDH+L P A LLE +IE++EER R+R Q+E+ RK+ R+LRLPGKL Sbjct: 366 RLTDATIKDHFDHWLSAAPDAAKALLERLIEKAEERARKRAQKEMARKSPTRRLRLPGKL 425 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ A TE+FIVEGDSAGGSAKQARNR QA+LPLRGKILNVASA +K+R NQ++ Sbjct: 426 ADCSRQSAENTEIFIVEGDSAGGSAKQARNREIQAILPLRGKILNVASASVDKLRGNQEL 485 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALGC T ++ + LRYE+VIIMTDADVDGAHIASLL+TFFY+EM LI+ HL+ Sbjct: 486 ADLAQALGCGTGKEFSLDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQAGHLY 545 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R++ G YA D+ HK ++++ + +GK+EISRFKGLGEM SQLKET M Sbjct: 546 LALPPLYRLSGGNTVRYARDDAHKDELMKTVFRTVRGKVEISRFKGLGEMPPSQLKETTM 605 Query: 634 DANKRTLLRVEINKDLN-----SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D KRTLLRV + + ++T+ + LMG K + RFKFI E A F D+ Sbjct: 606 DPAKRTLLRVVVPDLRDPEQKVDAEETRSLVESLMGRKPELRFKFITENARFAQDLD 662 >gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] gi|121890|sp|P22447|GYRB_MYCPN RecName: Full=DNA gyrase subunit B gi|44484|emb|CAA37622.1| gyrase B subunit [Mycoplasma pneumoniae] gi|1673811|gb|AAB95799.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] Length = 650 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 252/664 (37%), Positives = 382/664 (57%), Gaps = 28/664 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + YD+SSI+ILEGLE VR RPGMYIG T E+ LHH+ E+IDN++DE + G+A Sbjct: 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60 Query: 95 NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + ++++L + F+T V D+GRGIPV+ HPK N+ST+E + T LHAGGKFDN +Y++SGG Sbjct: 61 STVKLTL-KDNFVTIVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS V VAR++ + F G + L + K + GT++ F PD Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + + + Q A+L+ ++ + ++ P+ + + GGL Y Sbjct: 179 FTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFVDERRQ-----NPQSFSWKYDGGLVQY 232 Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 + + + +I G+ + ++ VE A + + I S+CN I T Sbjct: 233 IHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382 EGGTH G R AL + I ++A + + I DD+ I+S+ P++ GQ Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KL + + + V + + + F+ ++++NP EA ++ + E R R ++ RE RK Sbjct: 353 TKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + LPGKLADC+ +EL+IVEGDSAGG+AK R+R QA+LPLRGKILNV Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + E+I NN +I LV A+GC + + E LRY K+IIMTDADVDGAHI +LLLTFF++ Sbjct: 473 SHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 MY L+EQ ++++ PPL++++ K +Y + ++ ++ H K + R+KGLG Sbjct: 533 FMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQ---HPNLKYNLQRYKGLG 589 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A QL ET MD RTLL+V + + + LMG + R +FI++ A + Sbjct: 590 EMDAIQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREFIEQNARNV 645 Query: 682 DDVG 685 ++ Sbjct: 646 KNID 649 >gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis DSM 2160] gi|76558252|emb|CAI49840.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis DSM 2160] Length = 639 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 22/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S Y A I++LEGLE VR RP MYIG TD + LHHL EV+DNA+DE +AGY + IE Sbjct: 2 SQDSEYSAGQIQVLEGLEAVRKRPAMYIGSTDTRGLHHLVYEVVDNAIDEALAGYCDTIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V ++ +G +TV D+GRGIPV+ H + ++ +E+I+T LHAGGKFD+ +Y++SGGLHGVG Sbjct: 62 VVINDDGSVTVRDDGRGIPVDTH-EDHDRPAVEVIMTVLHAGGKFDSKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216 +SVVNALS L V + R ++ +F G P + LE ++ GT I F PD IF Sbjct: 121 VSVVNALSKWLEVEIKRDGHVWHHRFDHGEPENGLEQVREMDPNESTGTEIRFWPDDDIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F + L + A+L+ V ++ P+ F + GG++ ++ Sbjct: 181 ET-TDFTFSTLESRLRELAFLNPGVGITIRDER-----PEEPDASTFEYDGGIREFVAYL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335 E R ++ I + E+ H VE A+ I ++ N I T EGGTH +G + Sbjct: 235 NETRDVLHENIIYFEDEEDDIH---VEVAMQATAGVQGSIHAFANNINTREGGTHLTGFK 291 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++S+ +P+F GQTKTKL + + + Sbjct: 292 TALTRVINDYATSNGMLKDLDGNLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNGEVR 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 VE+A+ + +L ++P A ++ + V + ++ + RK+A+ LPGK Sbjct: 352 GIVESAVHEELATHLEEHPDTAEAIISKAVEAAKARKAAKKAEELTRRKSALESTSLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DC +ELF+VEGDSAGGSAKQ RN QA+LPLRGKILNV ++I N + Sbjct: 412 LSDCQTRDPEESELFVVEGDSAGGSAKQGRNPEFQAILPLRGKILNVEKHRLDRILENNE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +L+ A+G ++ E+ RY+K+II+ DADVDGAHI +LLLTF Y+ M LIE ++ Sbjct: 472 IRNLITAVGTGIGEEFDIEEARYQKIIILCDADVDGAHIRTLLLTFLYRHMTPLIEAGYV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL+R+ G + A E + +I+EE ++ RFKGLGEM QL +T Sbjct: 532 YAAQPPLYRVRDGGDTYDAMTEAERDRIVEEVCDGSPD--QVQRFKGLGEMNPKQLWDTT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R L ++ I + LMG + R +FI+E A + + Sbjct: 590 MNPENRILKQITIED----AAAADRMFSVLMGDAVEPRKQFIKEHADEAEWID 638 >gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 648 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 371/661 (56%), Gaps = 40/661 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA +I+ILE + VR RPGMYIG TDE+ LHHL EV+DN++DE +AGY + I V + Sbjct: 8 YDAKAIQILEDAQAVRKRPGMYIGSTDERGLHHLIYEVVDNSIDEALAGYCSRINVIIHK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G ++V D+GRGIPV+ HP+ KS LE+++T LHAG KFD Y I+GGLHGVGI VVN Sbjct: 68 DGSVSVEDDGRGIPVDMHPE-KGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR----------------GTRI 207 LS+ L + R I+ Q + RG P + K+ N GT I Sbjct: 127 FLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGTYI 186 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PD +IF F + + K + A+L+ ++ ++ +KE F + G Sbjct: 187 RFKPDAEIFETT-EFKYSIVKKKLRDLAFLNRGIEITLEDERS-------GKKEVFKYDG 238 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326 G+ +++ E + I ++ GK E+ G VE+A+ + + E ++ NTI T E Sbjct: 239 GIVEFVKFLNEGYNPIHRDVVYGKDEQDGII---VEFAMQYNDSTSENLLAFVNTIHTVE 295 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISII-SDDLMISAVGILSVFIREPEFAGQTKT 385 GGTH SG R ALT+ I +A+ + I + +D+ ++ V P+F GQTK Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGIDSLQGEDVREGLTAVIHVKHPNPQFEGQTKA 355 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + + + V + + Y ++P AT ++ I + R+ RK RE+ R+ + Sbjct: 356 KLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYL 415 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L LPGKLADCS+ ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV A Sbjct: 416 ESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARI 475 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +K+ N +I L+ A+G R + LRY K+IIMTDADVDGAHI +LLLTFFY+ M Sbjct: 476 DKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMP 535 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +LIE+ H+++ PL+RI +G Y + +E +E K G + RFKGLGEM Sbjct: 536 ELIEKGHIYIAQAPLYRIQKGKNIYYVYSDE-----EKEEKLRELGNASVQRFKGLGEMN 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL +T M+ R L+RV I + + LMG + R +FI + A + ++ Sbjct: 591 PQQLWDTTMNPETRRLIRVTIED----AAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7] gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7] Length = 645 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 251/659 (38%), Positives = 386/659 (58%), Gaps = 20/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + Q ++ YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DE + Sbjct: 2 SEEIKSKQDLANEYDASQIQVLEGLEAVRKRPGMYIGATSSEGLHHLVWEIVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A+ I +S++ +G + V+DNGRGIPV+ K + LE + T LHAGGKF Y++ Sbjct: 62 AGFADEINLSIEKDGSIIVMDNGRGIPVDIQAK-TGRPALETVFTILHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS L V V + + I+ Q++++G + +E + +K GT + F Sbjct: 121 SGGLHGVGSSVVNALSTTLDVYVYKNSKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFV 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF + F+ +L + A+L+ +K +E + + +++ GG+K Sbjct: 180 PDPEIFKETVEFNFDKLATRVRELAFLNKGLKITVEDKREDKQAFLE-----YHYEGGIK 234 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGT 329 +Y++ EN+ ++ E + E++G T+E A+ + S+ N I T EGGT Sbjct: 235 SYVEFLNENKVVLYDEPIFLEGEQQGI---TIEVAMQHTDGYHNNLMSFANNIHTYEGGT 291 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G + ALTR I YA+ + + ++ +D+ +LS+ +P+F GQTKTKL Sbjct: 292 HEFGFKTALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKL 351 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + +A+ + F+ +L++NP A +++E ++ +R + +K+ + Sbjct: 352 GNSEARTITDRLFSAHFEKFLMENPPVARQIVEKGLLAARARLAAKRAREVTRKKSGLEI 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 412 SNLPGKLADCSSKDPSISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDR 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I L A+G + RY K++IMTDADVDGAHI +LLLT FY+ M + Sbjct: 472 ILANEEIRSLFTAMGTGFGGDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPI 531 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +E ++++ PPL+++ QG K VY E+ + L+E K I R+KGLGEM A Sbjct: 532 VEAGYVYIAQPPLYQVRQGKKMVYLDSEDELNEYLKEIPLS--PKPAIQRYKGLGEMDAE 589 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R +L+V ++ + + K LMG + + R FI+E A ++ ++ Sbjct: 590 QLWETTMNPENRRMLQVTVDDAIEADKSCD----MLMGDRVEPRRIFIEENARYVQNLD 644 >gi|160932418|ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753] gi|156868377|gb|EDO61749.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753] Length = 646 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 243/654 (37%), Positives = 369/654 (56%), Gaps = 21/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ Y AS I++LEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I Sbjct: 7 TQTNEEYGASDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNAIDEALAGYCDKI 66 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + V DNGRGIPV PK + ++ T LHAGGKF Y++SGGLHGV Sbjct: 67 DVRILPGDIIVVEDNGRGIPVGIQPKM-GIPAVTVVFTVLHAGGKFGGGGYKVSGGLHGV 125 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L V V+ I+ Q+F RG ++ LE GT++TF+ DP+IF Sbjct: 126 GASVVNALSTWLEVEVSDGAHIYRQRFERGKTITDLEMIGDTTK-TGTKVTFQADPEIFS 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + ++ L + +A+L+ + +++ + F + GG+ ++++ Sbjct: 185 ESTVYEYETLETRLREQAFLNAGIHIELVDERDPENRVQK----NFLYEGGISSFVEFLH 240 Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334 + + +I +I K E A+ + E E+ + N I T +GGTHE G Sbjct: 241 KRKSLEVIHPDIIHVKGALTD-GSAEAEVAMQYNESYNELLISFANNIHTTDGGTHEEGF 299 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR + YA + ++ +D+ I+SV ++E +F GQTK KL + + Sbjct: 300 KRALTRIMNDYARKYNILKDGDKNLSGEDVREGLTAIISVKLKEAQFEGQTKAKLGNTEI 359 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + V+N + + YL +NP A + + + R+ + V RK+A+ LPG Sbjct: 360 RTLVDNLISEKLSAYLEENPATARAIFEKAMAASRAREAARKARELVRRKSALESAALPG 419 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC TE++IVEGDSAGGSAK R+R QA+LPL GK+LNV A +K+ N Sbjct: 420 KLADCQSRNPEETEIYIVEGDSAGGSAKGGRDRKFQAILPLWGKMLNVEKARLDKVYGND 479 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++M ++ ALGC ++ LRY KVIIM DADVDG+HI +LLLTFF++ M LIE+ H Sbjct: 480 KLMPVITALGCGIGDEFDLAKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMKPLIEEGH 539 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+R+T+G YA+ ++ + ++L+E I R+KGLGEM + QL ET Sbjct: 540 IYIAQPPLYRLTKGKNHYYAYSDKERDQMLKEMTVTAP----IQRYKGLGEMDSEQLWET 595 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R +L+VE+ ++ LMG K + R +FI++ A ++ ++ Sbjct: 596 TMNPETRIMLKVELED----AAAADETFTILMGDKVEPRREFIEKNAKYVQNLD 645 >gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656] gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656] gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629] gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1] Length = 645 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 379/657 (57%), Gaps = 19/657 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + Q + Y A I+ILEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY Sbjct: 2 SKEIQQNNQEYGADQIQILEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVDNAVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 IEV+++ + +TV D+GRGIPV + K KS LE++ T LHAGGKF Y++SGG Sbjct: 62 CKNIEVTIEEDNSITVQDDGRGIPVGTNHKA-KKSALEVVFTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212 LHGVG SVVNALS L V V + I+ Q + RG ++ + GT++ F PD Sbjct: 121 LHGVGASVVNALSTWLTVEVYKDGNIYRQSYKRGKTDDTVKIVGQCDESLHGTKVHFLPD 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + +D L + + A+L+ +K +E + + F++ GG+K + Sbjct: 181 PEIFEETV-YDYDTLKQRLRETAFLTKGLKITLKDVRENSHHNHV-----FHYEGGIKEF 234 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ + + E+ + + G + VE A+ + S+ N ++T EGGTH Sbjct: 235 VEYLNRGKEALYDEVIYCEGTQNGVY---VEVALQHNDSFNDSTFSFVNNVITPEGGTHL 291 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALT+ YA + + DD+ I+S+ I EP+F GQTK KL + Sbjct: 292 AGFRNALTKTFNAYAREKKILKDSDPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGN 351 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 +A+ V+ + + ++L QNP A + E ++ + R+ + RKT++ Sbjct: 352 SEARGAVDAVVSEKLTYFLEQNPDVAKNICEKSLLAQRAREAARKARDLTRRKTSLDGGT 411 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS E+FIVEGDSAGGSAK AR+R+ QA+LPLRGKILNV A ++I Sbjct: 412 LPGKLADCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRIY 471 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +N +I ++ A G + LRY+K+IIMTDADVDGAHIA+L+LTF Y+ M DLI+ Sbjct: 472 DNAEIRAMITAFGTGIHEDFDITKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIK 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + H++L +PPL+++ + YA+D++ ++IL + + K I R+KGLGEM A QL Sbjct: 532 EGHVYLATPPLYKVEKNKGVWYAYDDDELKQILNDIGRDNNNK--IQRYKGLGEMDADQL 589 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD + R L +V I+ + + + LMG K + R +FI+ A ++ ++ Sbjct: 590 WETTMDPDHRILKQVMIDG--ENSSELDVTFTTLMGDKVEPRKEFIEANAKYVTNLD 644 >gi|170016363|ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citreum KM20] gi|169803220|gb|ACA81838.1| DNA gyrase, B subunit [Leuconostoc citreum KM20] Length = 669 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 252/660 (38%), Positives = 373/660 (56%), Gaps = 22/660 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + + +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG Sbjct: 24 SASTVTANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAG 83 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+ I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SG Sbjct: 84 FASHITVTIEADNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSG 142 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRP 211 GLHGVG SVVNALS L V V R ++ F G + ++ EK RGT + F+P Sbjct: 143 GLHGVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIARGTIVHFKP 202 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF + F+ LL + A+L+ ++ + ++ P E F++ GG+K Sbjct: 203 DADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----AETPMTESFHYEGGIKE 257 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330 Y++ + ++ E + E+ G VE A+ + + + ++ N I T EGGTH Sbjct: 258 YVKYLNAEKVVVFPEPVYVEGEENGI---VVEAALQYTTDVKDSLRTFTNNINTYEGGTH 314 Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E+G + ALTR I YA + S+ +D+ I+S+ +P+F GQTKTKL Sbjct: 315 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 374 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447 + DA++ + + F ++++NP A +++E I + RL ++ RE+ +++ + Sbjct: 375 NSDARQATDRMFSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 434 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +K+ Sbjct: 435 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 494 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + E Y KVIIMTDADVDGAHI +LLLT FY+ M L+ Sbjct: 495 LANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLV 554 Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + ++++ PPL+ + G Y +E + L + + K K + R+KGLGEM Sbjct: 555 DSGYIYIAQPPLYGVALGNSKNREYLDSDEELEDYLAQLPANIKPK--VQRYKGLGEMDF 612 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD R LLRV D + + LMG R +FI+E A F++++ Sbjct: 613 DQLADTTMDPLNRRLLRV----DPADAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668 >gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG] gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705] gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG] gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705] gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG] Length = 653 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 261/649 (40%), Positives = 369/649 (56%), Gaps = 22/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A IEV ++ Sbjct: 19 YDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFATRIEVEVNP 78 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 79 DNSVTVTDDGRGIPVDIQAK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 137 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGF 222 ALS L VTV R + F RG +P+++ GT++ F+PDP IF + F Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + A+L+ +K ++ + EK F++ GGLK+Y+ + + Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHYEGGLKSYVDFLTKKKEN 252 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341 + E + + KG TVE A+ + + ++ N I T EGGTHE+G + ALTR Sbjct: 253 LLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRV 309 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + + DD+ ++SV +P+F GQTKTKL + DA+ V+ Sbjct: 310 INDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRT 369 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 D F+ +L+++P + +++ + S+ RL ++ RE +K+ + LPGKLAD + Sbjct: 370 FSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTS 429 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A E+I N++I L Sbjct: 430 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFT 489 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + RY K+IIMTDADVDGAHI +LLLT Y+ M +++ ++++ PP Sbjct: 490 AMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPP 549 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+ QG Y +E Q IL + K +I R+KGLGEM ASQL ET MD + R Sbjct: 550 LYRLRQGKMMRYIDSDEELQDILGQLPPS--PKPDIQRYKGLGEMDASQLWETTMDPDTR 607 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 LLRV + LMG + R KFI+E A F+D ++ Sbjct: 608 RLLRVS----PKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNID 652 >gi|212639275|ref|YP_002315795.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1] gi|212560755|gb|ACJ33810.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1] Length = 657 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 358/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY I V++ Sbjct: 10 TYNEDTIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGKRIIVTIH 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 NDQSISVQDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R I+ Q+F G +K V + GT+I F+PDP IF F Sbjct: 128 NALSEWLEVTIHRDGFIYYQRFEHGGKPVTTLEKIGVTKQTGTKIQFKPDPTIFST-TTF 186 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + + A+L +K ++ + FY+ G++ ++Q E + + Sbjct: 187 HHETISERLRESAFLLKGLKIELYDER-------TGLCDTFYYENGIEAFVQYLNEEKDV 239 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + +F + VE+A + + + S+ N + T +GGTHE G + A+TR Sbjct: 240 LHPVVFFTGEQSD----IEVEFAFQFHDGYAENMLSFVNHVRTKDGGTHEIGAKTAMTRV 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA +R ++ D+ I+SV I E +F GQTK KL + +A+ VE Sbjct: 296 FNEYARKVGLLKERDKNLEGTDIREGLSAIISVRIPEALLQFEGQTKGKLGTPEARSAVE 355 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLA 454 + + ++L +NP AT L++ I + R RK RE R RK + L GKL Sbjct: 356 AVVSEKLTYFLNENPDIATLLIKKAIRAFQAREAARKAREEARSGKKRKGKEHVLSGKLT 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 416 PAQTRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + +D+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +F+ Sbjct: 476 TIIHAIGGGVGADFSLDDIHYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFI 535 Query: 575 ISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++ G K V YA +E Q IL++ K I R+KGLGEM A QL E Sbjct: 536 ALPPLYKVSKKVGKKEVVEYAWTDEQLQSILKKIGK----GYTIQRYKGLGEMNADQLWE 591 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 592 TTMNPETRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIESNVQF 637 >gi|296110748|ref|YP_003621129.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154] gi|295832279|gb|ADG40160.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154] Length = 669 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 254/659 (38%), Positives = 375/659 (56%), Gaps = 22/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A ++ + +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 25 ASTVEAQAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 84 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SGG Sbjct: 85 ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 143 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS L V V R ++ F G + ++ EK RGT + F PD Sbjct: 144 LHGVGASVVNALSTNLDVKVVRDGQVYYMDFKIGRVNTRMVKLDEKPTIDRGTIVHFNPD 203 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + F+ LL + A+L+ ++ + ++ P E F+F GG+K Y Sbjct: 204 ADIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNR-----LETPVVESFHFEGGIKEY 258 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 ++ +++I E + E+ G VE A+ + + + ++ N I T EGGTHE Sbjct: 259 VEYLNAEKTVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFTNNINTYEGGTHE 315 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G + ALTR I YA + S+ +D+ I+S+ +P+F GQTKTKL + Sbjct: 316 TGFKTALTRVINDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 375 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448 DA++ + + F ++++NP+ A +++E I + RL ++ RE+ +++ + Sbjct: 376 SDARQATDRMFSETFSRFMMENPVVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGN 435 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +K+ Sbjct: 436 LPGKLADNTSNDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDKVL 495 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + E Y KVIIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 496 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 555 Query: 569 QKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + G Y +E + L + + K K + R+KGLGEM Sbjct: 556 AGYIYIAQPPLYGVALGNSKTREYLDTDEELETYLAQLPSNIKPK--VQRYKGLGEMDFD 613 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD R LLRV D + + LMG R +FI+E A F++++ Sbjct: 614 QLADTTMDPLNRRLLRV----DPTDAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668 >gi|332182303|gb|AEE17991.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168] Length = 638 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 239/650 (36%), Positives = 361/650 (55%), Gaps = 23/650 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I +L+GLE VR RPGMYIG T LHHL EV+DN +DE +AG+ + I V L+ Sbjct: 4 SYSASNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDTIVVVLE 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + V DNGRGIPV+ HP S LE++LT LHAGGKFD +Y++SGGLHGVG+S V Sbjct: 64 KDDIVRVEDNGRGIPVDIHP-TEGISALELVLTRLHAGGKFDKGSYKVSGGLHGVGVSCV 122 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V + + KF+ G SP+++ + T I ++ D IF + + Sbjct: 123 NALSSWLEAYVEKDGKKYYMKFNTGAAESPVKETGTTDRRG-TTIRWKADSTIFTETTTY 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + A+L+ +K + ++ P++ F F GG++ ++ E + + Sbjct: 182 NFDVLCTRLRELAFLNSGIKIVFRDER-----LTNPKEVVFQFEGGIRHFVSYLNEGKKV 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I E E+ VE I + + + S+ N I T EGGTH GL+ ALT Sbjct: 237 IPEEPVYISGERDDIQ---VELCIQYNDGYNENMLSFVNDINTREGGTHLEGLKSALTLV 293 Query: 342 IKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + ++ + + + + +D+ ++SV + EP+F GQTKTKL + + + V Sbjct: 294 MNEFLKNNAKLLKKMDKEEKLTGEDVRAGLTSVISVKVPEPQFEGQTKTKLGNTEVRGIV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + QNP ++LE + E + R+ + RK ++ LPGKLAD Sbjct: 354 ASLSNEQLTLFFEQNPRLIEQILEKAVSEAAARIAARKAKEATRRKNSMDSFGLPGKLAD 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E++IVEGDSAGGSAKQ R+ QA+LPL GK+LNV +K+ NN ++ Sbjct: 414 CSSKDPTECEVYIVEGDSAGGSAKQGRDPKIQAILPLWGKMLNVEKTRIDKVINNDKLQP 473 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +LG + E LRY K+IIM DADVDG+HI++LLLTFF++ M LIE ++++ Sbjct: 474 VIASLGAGIGKDFNVEKLRYHKIIIMADADVDGSHISTLLLTFFFRYMPQLIEHGYVYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I G K + + + +IL+ KGK++I R+KGLGEM +LKET MD Sbjct: 534 MPPLYKIKLGKKEHFVFSDAERDEILQTLG-DDKGKVDIQRYKGLGEMEWKELKETTMDP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + RVE+ + LMG + + R KFI++ A + + Sbjct: 593 ANRKMKRVELTDAV----AADHIFTTLMGEEVEPRRKFIEDNAVYAT-LD 637 >gi|306821823|ref|ZP_07455415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550130|gb|EFM38129.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 649 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 260/654 (39%), Positives = 383/654 (58%), Gaps = 21/654 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + Y A I++LEGLEPVR RPGMYIG T K LHHL EV+DNA+DE +AG+ Sbjct: 11 EEKVNSEYGAEQIQVLEGLEPVRKRPGMYIGSTGSKGLHHLVYEVVDNAIDEALAGFCKN 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I VS+D N +TV+D+GRGIPVE HPK KSTLE +LT LHAGGKF Y++SGGLHG Sbjct: 71 IYVSIDVNNGITVIDDGRGIPVEVHPK-TGKSTLETVLTVLHAGGKFGAGGYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VG+SVVNALS L V + I+ Q+F +G P+S + +RGT I+F PD + Sbjct: 130 VGVSVVNALSKSLTAVVKKDGKIYKQEFEKGNPVSDVHVVGDCPMEERGTCISFLPDETV 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + A+L+ + ++ I + +++ GG+ Y++ Sbjct: 190 FEETV-YSFEVLEHRLRELAFLNKGISITLEDNRTIEKVTRK-----YHYEGGIIEYVKA 243 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +NR ++ I+ K +++ ++ +E A+ + + I S+ N I T EGG H G Sbjct: 244 LNKNREALTEVIYFNKLDEEFSYD--IEIAMQYTDAYVENIYSFANNINTVEGGMHLIGF 301 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR + YA ++ + +D+ I+SV + EP++ GQTKTKL + Sbjct: 302 KSALTRVVNDYARKNNMLKEKDENFTGEDIREGLTAIISVKLPEPQYEGQTKTKLGNPQM 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + +VE D +L +NP A ++E + R ++ R+ RK + LPG Sbjct: 362 RSSVEQITVDQVATFLEENPATARIIMEKCMRSQRARQAAKRARDLTRRKGILESTSLPG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +E+FIVEGDSAGGSAK+ RN NQA+LPLRGKILNV A +K + Sbjct: 422 KLADCREKDPSKSEIFIVEGDSAGGSAKEGRNSQNQAILPLRGKILNVEKARLDKALQSD 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I +++ A GC S++ + LRY K+IIM+DADVDGAHI +L+LTFF++ M LIE+ + Sbjct: 482 TIKNMITAFGCGIGSEFDDSKLRYHKIIIMSDADVDGAHIRTLILTFFFRYMRPLIEKGY 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF I +G K+ YA+ E + L E G+ + +SR KGLGEM A +L +T Sbjct: 542 VYIAQPPLFSIEKGKKTYYAYSPEELEAKLNEI---GRERTVVSRNKGLGEMDAEELGDT 598 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KR LL+V + + + + LMG K + R +FIQ+ A +++++ Sbjct: 599 TMDPAKRVLLKVNLEDAI----AADEIFDILMGDKVEPRREFIQKNAKYVENLD 648 >gi|257884846|ref|ZP_05664499.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501] gi|257820684|gb|EEV47832.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501] Length = 681 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 2 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 120 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638 >gi|257878031|ref|ZP_05657684.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933] gi|257881183|ref|ZP_05660836.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502] gi|257889770|ref|ZP_05669423.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410] gi|257892293|ref|ZP_05671946.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408] gi|258616477|ref|ZP_05714247.1| DNA topoisomerase IV subunit B [Enterococcus faecium DO] gi|260559081|ref|ZP_05831267.1| gram positive topoisomerase IV [Enterococcus faecium C68] gi|257812259|gb|EEV41017.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933] gi|257816841|gb|EEV44169.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502] gi|257826130|gb|EEV52756.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410] gi|257828672|gb|EEV55279.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408] gi|260074838|gb|EEW63154.1| gram positive topoisomerase IV [Enterococcus faecium C68] Length = 681 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 360/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 2 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 120 VGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + P KE F++ G+K ++ Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638 >gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929] gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929] Length = 647 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 250/660 (37%), Positives = 371/660 (56%), Gaps = 20/660 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE + Sbjct: 2 ADEKETKKELAHEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++ Sbjct: 62 AGFATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVFTILHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITF 209 SGGLHGVG SVVNALS EL V V R ++ FSRG + ++ +V + GT++ F Sbjct: 121 SGGLHGVGASVVNALSSELDVEVTRDGKVYYMDFSRGHVKTKMKVVREVSDDLHGTKVHF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDP IF + +D L + A+L+ ++ + P +++F + GG+ Sbjct: 181 LPDPDIFRETTTYDIKVLTARLRELAFLNKGLRIVVLDLR-----PEKPTEQDFMYEGGI 235 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 K Y++ ++ + E + G TVE AI + + ++ N I T EGG Sbjct: 236 KHYVEYLDNSKETLLDEPIYVEGVMNGI---TVEVAIQYTNDYHNTLMTFTNNIHTYEGG 292 Query: 329 THESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE G + ALTR I YA + + ++ +D+ ++S+ +P+F GQTKTK Sbjct: 293 THEEGFKRALTRVINDYARKNKLLKDNEPNLSGEDVREGTTAVVSIKHPDPQFEGQTKTK 352 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + DA+ + D F +L++NP A K+++ + S+ R ++ RE +K+ + Sbjct: 353 LGNSDARTVTDRIFSDHFTKFLMENPKMARKIVDRGMLASKARSAAKRAREVTRKKSGLE 412 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A + Sbjct: 413 ISNLPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 472 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I N++I L A+G + + Y K+IIMTDADVDGAHI +LLLT Y+ M Sbjct: 473 RILANEEIRSLFTAMGTGFGEDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRP 532 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LI+ +++ PPL+++ QG S Y ++ L + K I R+KGLGEM A Sbjct: 533 LIDAGFVYVAQPPLYQVRQGKMSRYIDSDDDLNAFLGTLQPS--PKPVIQRYKGLGEMDA 590 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ R LLRV + + + + LMG K + R +FI++ A+F++++ Sbjct: 591 EQLWDTTMNPENRHLLRV----ESSDAAEADKVFSMLMGDKVEPRREFIEDNATFVENLD 646 >gi|47458936|ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 163K] gi|47458264|gb|AAT27587.1| DNA gyrase subunit b [Mycoplasma mobile 163K] Length = 647 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 365/652 (55%), Gaps = 19/652 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++NY +I++LEGLE VR RPGMYIG T +K LHHL E++DN++DE +AG+AN +++ Sbjct: 8 SNNNYSGKNIQVLEGLEAVRKRPGMYIGTTGKKGLHHLIWEIVDNSIDEAMAGHANQVKI 67 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ NG+ + DNGRGIP + H K KS +E +LT LHAGGKFD TY++SGGLHGVG Sbjct: 68 TLNKNGYAIIEDNGRGIPTDIHEK-TGKSAVETVLTVLHAGGKFDKDTYKVSGGLHGVGA 126 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS+ L V V R+ + Q+F G P+ L V GT+I+F PD I Sbjct: 127 SVVNALSNHLEVWVKREGKLHYQEFRFGKPVKALNIISDVEESDTGTKISFFPDYSIMDK 186 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ ++ + AYL+ +K ++ PE EFY+ GG+ Y++ Sbjct: 187 N-EFEYDVIVDRAKQIAYLNRGLKLILRDER-----QEEPEDIEFYYEGGIIEYVEALNI 240 Query: 279 NRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 ++ + + + ++ G TVE A+ + + SY N I T EGGTHE G Sbjct: 241 SKKALHENVIYAEGKEVGDEGDITVEVALQYTDSYQPNIVSYANNISTIEGGTHEQGFVD 300 Query: 337 ALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 AL R YA + + DD+ I+S+ +P F GQTK KL + DA+ Sbjct: 301 ALIRIFNNYAGENKLMKNDKEKLTRDDIREGLTAIISIKHVDPVFEGQTKAKLGNKDART 360 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPGKL 453 L +L++NP +A ++E V+ + R RE +K + LPGKL Sbjct: 361 ATNKVLSSVLYKFLLENPDQAKVIIEKVLFSQKIRFSASAAREATIKKNSFGISSLPGKL 420 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS A +EL+IVEG+SAGGSAK R+R QA+LPLRGK++N A K+ N +I Sbjct: 421 ADCSTKNAEISELYIVEGNSAGGSAKMGRDRETQAILPLRGKVINAEKANIVKVFENTEI 480 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + L+ ALG ++ LRY KV+IMTDADVDGAHI +LLLTF Y LIE ++ Sbjct: 481 LSLITALGTGVGPEFNINKLRYHKVVIMTDADVDGAHIRTLLLTFLYHHFRPLIEYGFIY 540 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I+ G YA + K+++L++ + K I R+KGLGEM QL ET M Sbjct: 541 IAQPPLYKISYGKSFQYAFSDAEKEEVLKQLLPNQKA--TIQRYKGLGEMDPEQLWETTM 598 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R +L+V+I + LMG R +FI++ A ++ + Sbjct: 599 NPESRKMLQVQIED----AAIADLVFSTLMGGDVAPRREFIEKNAKYVKQID 646 >gi|282880626|ref|ZP_06289332.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1] gi|281305521|gb|EFA97575.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1] Length = 657 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 258/669 (38%), Positives = 390/669 (58%), Gaps = 30/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AEKQNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDIEVTINEDESITVQDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G L P++ + +KRGTR F PD Sbjct: 121 HGVGVSCVNALSSHMTSQVFRDGKIYQQEYEKGKALYPVKVVGET-DKRGTRQQFWPDGS 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + A+L+ ++ + + E G E F+ GLK +++ Sbjct: 180 IFTTTH-FQWDIIARRMRELAFLNAGIRITLTDLRPNEE--GKTRTEVFHAKDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRAALTRTLKTYADSEPTISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + V+ A+ + +YL ++P EA ++ E V+ + R+ RK RE ++ + Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNFMSG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617 + M +IE+ HL++ +PPL++ + + S Y + E+ +Q ++++ + I R+ Sbjct: 534 RFMPKVIEEGHLYIATPPLYKCSYKNKASEYCYTEQQRQAFIDKYANGEEDSKSIHTQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L +V I + D + + LMG + R +FI++ Sbjct: 594 KGLGEMNPEQLWETTMNPKTRLLKQVTIE----NAADADEIFSMLMGDDVEPRREFIEKN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN] gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN] Length = 683 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 259/687 (37%), Positives = 389/687 (56%), Gaps = 29/687 (4%) Query: 16 SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75 +K + + N +NY AS+I++LEGLE VR RP MYIG EK LH Sbjct: 10 KPKLKNNYQKKNKYNLNKMADNLENENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLH 69 Query: 76 HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135 HL +E +DN++DE +AGY + IEV+++ + +TV D+GRGIPV+ H K S LE+++T Sbjct: 70 HLINETVDNSIDEAMAGYCSHIEVTINEDNSITVEDDGRGIPVDEHEKLHK-SALEVVMT 128 Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195 LHAGGKFD +Y++SGGLHGVG+S VNALS + V R I+ Q++ +G PL ++ Sbjct: 129 VLHAGGKFDKGSYKVSGGLHGVGVSCVNALSSHMMSQVFRNGKIYQQEYEKGKPLYSVKI 188 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 +K GTR F PD IF + + + + A+L+ +K + + E Sbjct: 189 VGDT-DKTGTRQQFWPDASIFTTTI-YQWDIVARRMRELAFLNAGIKITLTDLRPNEE-- 244 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 G ++E F+ GLK +++ +R+ + ++ KTEK+G +E AI + + Sbjct: 245 GKTKQEVFHAQEGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIP---IEVAIMYNNDYNEN 301 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVG 368 I SY N I T EGGTH +G R ALTR +K YA+ K I I +D Sbjct: 302 IHSYVNNINTIEGGTHLTGFRTALTRTLKAYADNDTQIAKQIEKAKIEITGEDFREGLTA 361 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428 ++S+ + EP+F GQTKTKL + + V+ A+ + +YL +NP EA + + VI + Sbjct: 362 VISIKVAEPQFEGQTKTKLGNSEVSGAVQQAVGEALSYYLEENPAEAKLICDKVILAATA 421 Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 R+ RK RE RK + LPGKLADCS E+F+VEGDSAGGSAKQ R+R Q Sbjct: 422 RIAARKARESVQRKNVMTGGGLPGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQ 481 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIM 541 A+LPLRGKILNV ++ + +M+++Q++G R + + LRY+K+IIM Sbjct: 482 AILPLRGKILNVEKVQRHRVFEAESVMNIIQSIGVRFGVDGESDFEANTDKLRYDKIIIM 541 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TDADVDG+HI +L++T FY+ M +IE+ HL++ +PPL++ T S Y + E+ + + L Sbjct: 542 TDADVDGSHIDTLIMTLFYRYMPRVIEEGHLYIATPPLYKCTFKKVSEYCYTEQQRLQFL 601 Query: 602 EEF--KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 E++ + R+KGLGEM QL +T M+ R L +V I + Sbjct: 602 EKYVGGDEENKALHTQRYKGLGEMNPEQLWDTTMNPKTRLLKQVTIENATT----ADEMF 657 Query: 660 NKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R +FI++ A++ ++ Sbjct: 658 SMLMGDDVEPRREFIEQNATYA-NIDA 683 >gi|119384573|ref|YP_915629.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222] gi|119374340|gb|ABL69933.1| DNA topoisomerase IV subunit B [Paracoccus denitrificans PD1222] Length = 656 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 347/656 (52%), Positives = 447/656 (68%), Gaps = 12/656 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A AS++Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A Sbjct: 7 PAADKASESYSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV L + + + DNGRGIP++ HPKFP KS LE+IL TLHAGGKF Y+ SGGL Sbjct: 67 SRIEVELLADFSVVIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGDVYQTSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALSD + V VAR ++ Q FSRG+PL P+EK N+RGT +TF D + Sbjct: 127 HGVGASVVNALSDSMVVQVARNRELYEQCFSRGLPLGPVEKVGAAPNRRGTTVTFHADEQ 186 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F ARLL+M +SKAYL V+ W + + E P + F+FPGGL YL Sbjct: 187 IF-GHHRFKPARLLRMVKSKAYLFSGVEIRWKSEIDDGE---TPLEATFHFPGGLADYLG 242 Query: 275 TKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 L N S + F G + +K G V+WAI W + I SYCNT+ T EGGTHE Sbjct: 243 EVLGNASTYADRPFAGSVDFKEKFNTPGKVDWAINWTPSRDGFIQSYCNTVPTPEGGTHE 302 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G A+ RGI+ Y E NK+A I DDL+ ++S FIREPEF GQTK +L + + Sbjct: 303 AGFWSAILRGIRAYGERVSNKKAAQITRDDLLAGGCALVSCFIREPEFVGQTKDRLATTE 362 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 AQR VE A+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPG Sbjct: 363 AQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPG 422 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS GTELFIVEGDSAGGSAK AR R+ QA+LPLRGKILNV A S K+ +NQ Sbjct: 423 KLVDCSATNREGTELFIVEGDSAGGSAKMARERTTQALLPLRGKILNVLGAASSKLGSNQ 482 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I DL QALG S++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ H Sbjct: 483 EIADLCQALGVGMGSRFNVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDKGH 542 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+TQG +Y D+ K+ L + GKGKI++ RFKGLGEM A LK+T Sbjct: 543 LYLACPPLYRLTQGPHRIYVADDAEKESWLAK-GLGGKGKIDVQRFKGLGEMDAKDLKDT 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 M+ R L+RV I++ +T D + +LMG K + RF+FIQE A F D ++ Sbjct: 602 TMNPRTRKLIRVSIDE--EEGGETGDLVERLMGKKPELRFQFIQENAQFADAEELD 655 >gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403] gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403] gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56] Length = 651 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 258/649 (39%), Positives = 381/649 (58%), Gaps = 23/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ IEV Sbjct: 12 ADEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L VTV + + Q++ RG+ L+ + ++RGT + F PDP+IF + Sbjct: 131 VVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHFVPDPEIFTETV 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L + A+L+ ++ + +E EK + F++ GG+++Y++ EN+ Sbjct: 190 EFDFDKLATRVRELAFLNRGLRISLTDKREGNEKN----EVHFHYEGGIQSYVEYLNENK 245 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALT 339 ++I + E G VE A+ + + + S+ N I T EGGTHE G R ALT Sbjct: 246 TVIFEPAIFTEGEMDGI---AVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFRTALT 302 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + + ++ DD+ ++SV P+F GQTKTKL + + V Sbjct: 303 RVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVTGIVN 362 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + ++++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 363 KLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 422 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 423 SSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 482 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + Y RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 483 FTAMGTGFGADYDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQ 542 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ I G+++ Y E+ Q+ L + G+ K + R+KGLGEM QL +T Sbjct: 543 PPIYGIKVGSETKEYIQPGENQEKDLQEALARW-AQGRTKPTVQRYKGLGEMDDHQLWDT 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV + + + LMG + + R +FI+ A + Sbjct: 602 TMDPEHRLMARVSVED----AAEADKIFDMLMGDRVEPRREFIENNAQY 646 >gi|307352947|ref|YP_003893998.1| DNA gyrase,subunit B [Methanoplanus petrolearius DSM 11571] gi|307156180|gb|ADN35560.1| DNA gyrase, B subunit [Methanoplanus petrolearius DSM 11571] Length = 640 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 255/654 (38%), Positives = 372/654 (56%), Gaps = 24/654 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +NY+AS+I +LEGLEPVR RP MYIG TD + LHHL EV+DNA+DE +AG + I V Sbjct: 2 AQNNYNASNITVLEGLEPVRERPAMYIGSTDVRGLHHLVYEVVDNAVDEALAGVCDHIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G TV DNGRGIPV+ + KS LE+++T LHAGGKFD +TY++SGGLHGVG+ Sbjct: 62 TLGRDGTCTVEDNGRGIPVDIMEEQDGKSALEVVMTVLHAGGKFDKNTYQVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE----KVRNKRGTRITFRPDPKI 215 SVVNALS+ L V V R I+ F+RG S L ++ K GT+I+F+PD I Sbjct: 122 SVVNALSEFLQVEVFRDGYIYDMGFARGGLKSDLTSRKNAAPDAFEKHGTKISFKPDALI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + A+L+ + S ++ + F + GG+ ++ Sbjct: 182 FET-VTFDYDILSHRMRELAFLNRGITIEISDERS-------GYADIFNYEGGISEFVTY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + + + ++ T K VE A+ + + ++ N++ T EGGTH G Sbjct: 234 LITGKETVHPDVIYFDT-KDAASMTEVEVALQYSTAYSETMMTFVNSVNTREGGTHLEGF 292 Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I K A+ + +S +D+ V ++S+ + P+F GQTK +L + + Sbjct: 293 RSALTRAINKSAKDNNLMKGMSESLKGEDVREGLVTVISLKVANPQFEGQTKMRLGNSNV 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 + V++ + Y +NP ++ + + R RK RE+ R+ + + LPG Sbjct: 353 KGIVDSLVYQSLTEYFEENPKVIQAIVSKAVGAARAREAARKARELARRKSTLESGGLPG 412 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +I N Sbjct: 413 KLADCSERDPSKSEIYIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKANPHRILKNA 472 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ A+GC + E RY +I MTDADVDGAHI +LLLTFFY+ M +LIE+ + Sbjct: 473 EIQTLISAIGCGFGESFDVEKARYHHIIFMTDADVDGAHICTLLLTFFYRYMPELIEKGY 532 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLFR+ +G YA EE ++ ++EF G + + R+KGLGEM A QL T Sbjct: 533 IYIAQPPLFRVAKGKNEKYAFSEEEMKRYVKEF---GDKGVSVQRYKGLGEMNADQLWHT 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M R L +V + + + +KLMG + R +FI + + ++ Sbjct: 590 TMAPESRVLKQVSVIE----ASYADEIFSKLMGDDVEARKEFIIRHSKEVTNLD 639 >gi|227876546|ref|ZP_03994657.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|227842860|gb|EEJ53058.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] Length = 671 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 251/672 (37%), Positives = 358/672 (53%), Gaps = 30/672 (4%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL EV+DN++DE +AGY + I Sbjct: 5 EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF S+Y +SGGLHGV Sbjct: 65 EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS ++ TV R + +F G ++ ++ K + GT F PDP IF Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261 FD L Q A+L+ ++ + ++ G Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKVGHRHV 242 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 + + GL Y+ + E +E A+ W I +Y N Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 TI T EGGTHE G R ALT + KYA + ++ DD ++SV +R P+ Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKTKL + +A+ V+ + + +P EA +L R RK R+ Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RKTA+ +PGKL DCS A E+FIVEGDSAGGSA R+ ++QA+LPLRGKIL Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +K +N++I L+ A G + LRY K+++M DADVDG HIA+LLLT Sbjct: 483 NVEKARLDKALDNKEIQSLITAFGTGIGEDFDLSKLRYHKIVLMADADVDGQHIATLLLT 542 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE--- 613 ++ M LIE+ H+FL +PPL+R+ + + + ++ K K+L+ + G + Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKDKLLDMGLEGGGRLPKEGG 602 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 I R+KGLGEM +L ET MD R L +V +++ ++ + LMG R F Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFSLLMGEDVASRRSF 658 Query: 674 IQERASFIDDVG 685 IQ A + + Sbjct: 659 IQRNAQDVRFLD 670 >gi|221195249|ref|ZP_03568305.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626] gi|221185152|gb|EEE17543.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626] Length = 649 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 254/661 (38%), Positives = 370/661 (55%), Gaps = 26/661 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + NY + I +LEGLEPVR RPGMYIG T LHHL E++DN++DE +AG+ Sbjct: 2 AKEKKSNYSSDDITVLEGLEPVRKRPGMYIGTTSSAGLHHLVWEIVDNSVDEALAGFCTK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + ++V DNGRGIPV+ HPK TLE++LT LHAGGKFDNS Y++SGGLHG Sbjct: 62 IKVTVHADNSVSVEDNGRGIPVDIHPK-KKIPTLEVVLTILHAGGKFDNSAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS + V R I+ +F RG +++ K ++ GT ITF PD IF Sbjct: 121 VGVSVVNALSKRMIAEVKRDGKIYQMEFKRGKTTQKMKEIGKTKS-TGTTITFWPDDTIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L Q A+L+ +K + ++E+ IP E+ + GG+ +++ Sbjct: 180 ETTT-YNFDTLRDRLQETAFLNKNLKIVLTDEREL-----IPRVVEYQYAGGIIDFVKYL 233 Query: 277 LENRSL----ISSEIFTGKTEKK--GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGT 329 + +++ G +E + G VE A+ W E N S+ N I T+EGG Sbjct: 234 NDEKTVLTGLSKPIYIEGSSEPDAPTSQMGEVEVAMQWNTEFNDRTLSFANDIYTEEGGM 293 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H G R ALT+ + Y ++ + DD+ ++SV + +P+F GQTK KL Sbjct: 294 HLEGFRTALTKAVNDYGTRQGILKEKDPKLTGDDIREGLTAVISVKLPDPQFEGQTKAKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RK 446 S + + YL ++P +A ++L+ + ++ RL RK RE R+ + Sbjct: 354 GSSYMRTLTNKIVSSGLAEYLEEHPNQAKEILKKATQAAKGRLAARKAREATRRKGLLES 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV + + Sbjct: 414 ASLPGKLADCSVKDPEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHR 473 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++ I L+ A+G ++ E RY K++IMTDADVDG+HI LLLTFFY+ M + Sbjct: 474 ALSSDTITSLITAIGTGVGEEFNLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPM 533 Query: 567 IEQKHLFLISPPLFRIT-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 I+ ++++ PPL++I +G K Y + +E +E + K + R+KGLGEM Sbjct: 534 IDAGYIYVAQPPLYQIKAKGKKHGKYIYTDEEL--AVEAKQFEDSSKYTVQRYKGLGEMD 591 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL T M+ R LL+V I+ + ++ LMG + ++R FIQ A + + Sbjct: 592 PEQLWSTTMEPKNRILLKVTIDDAM----AADRAVADLMGNQVEKRKDFIQTHAKDVRFL 647 Query: 685 G 685 Sbjct: 648 D 648 >gi|261207615|ref|ZP_05922300.1| gram positive topoisomerase IV [Enterococcus faecium TC 6] gi|260077998|gb|EEW65704.1| gram positive topoisomerase IV [Enterococcus faecium TC 6] Length = 681 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 361/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 2 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K + GT + F PD I Sbjct: 120 VGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + +P KE F++ G+K ++ Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEVPVKEIFHYEEGIKEFVDY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638 >gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23] gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23] Length = 658 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 258/664 (38%), Positives = 381/664 (57%), Gaps = 28/664 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY IE Sbjct: 7 NQEQNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTHIE 66 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLHGVG Sbjct: 67 VTINEDNSITVQDNGRGIPVDEHEKMHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGVG 125 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +S VNALS + V R I+ Q++ +G PL ++ +K GTR F PD IF Sbjct: 126 VSCVNALSTHMMSQVFRNGHIYQQEYEKGKPLYDVKIVGDT-DKTGTRQQFWPDGSIFTT 184 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + + K + AYL+ + + + E+ + + E F+ GLK +++ Sbjct: 185 -TEYKYDIIAKRMRELAYLNAGITITLTDLR-PDEEGNLRQPEVFHAKEGLKEFVRYVDR 242 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +R+ I + KTEK G +E A+ + + I SY N I T EGGTH +G R+A Sbjct: 243 HRTSIIGDPICLKTEKDGVP---IEVALLYNSDYSENIHSYVNNINTIEGGTHLTGFRIA 299 Query: 338 LTRGIKKYAELTQ------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 L R +KKYA+ K I + DD I+SV + EP+F GQTKTKL + + Sbjct: 300 LARTLKKYADEDDQLRKQIEKAKIEVAQDDFREGLTAIISVKVAEPQFEGQTKTKLGNSE 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 V+ A+ + +YL +NP EA + E VI + R+ RK RE ++ + LP Sbjct: 360 VNGAVQKAVGEAMTNYLEENPKEAHTICEKVILAATARIAARKARESVQRKNPMTGGGLP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV ++ Sbjct: 420 GKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKVQWHRVFEA 479 Query: 511 QQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 + +M+++Q++G R + LRY+K+IIMTDADVDG+HI +L++T FY+ M Sbjct: 480 ESVMNIIQSIGVRFGVDGEDSKDANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMP 539 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFKGLGE 622 +I+ HL++ +PPL++ T S Y + E+ +Q ++++ + R+KGLGE Sbjct: 540 QVIQGGHLYIATPPLYKCTYKKTSEYCYTEQQRQAFIDKYVAGNGDDKGLHTQRYKGLGE 599 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL ET M+ R L +V I + + + + LMG + R +FI++ A++ Sbjct: 600 MNPEQLWETTMNPENRLLKQVTIE----NAAEADEIFSMLMGDDVEPRREFIEKNATYA- 654 Query: 683 DVGT 686 ++ Sbjct: 655 NIDA 658 >gi|239616758|ref|YP_002940080.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1] gi|239505589|gb|ACR79076.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1] Length = 631 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 382/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y+A SI+IL+GLEPVR RPGMYIG T + LHHL EV+DN++DEV+ GY + I+++ Sbjct: 2 STDYNAQSIKILKGLEPVRQRPGMYIGSTGKAGLHHLIYEVVDNSIDEVVGGYCDYIKIT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V DNGRGIPV+ HP+ S LE+++TTLHAGGKF +Y+ISGGLHGVG+S Sbjct: 62 IFEDGSVSVWDNGRGIPVDIHPE-TGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + V V R I+ Q++ RG P +P+E + +KRG+ + F+PD + Sbjct: 121 VVNALSEWMEVKVYRDGKIYRQRYERGKPTTPVEIIGET-DKRGSLVAFKPD-SLVFTTT 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + A+L+ RV + + EK F+F GG+ +++ + Sbjct: 179 DFDFDILESRFKELAFLNPRVTIEFED-RRYDEKRV------FHFEGGIVEFVKYLNRKK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ E F + ++ A+ + I ++ N I T EGGTH +G + LT Sbjct: 232 TAINKEPFYIEGTYNDV---KIQLAMQYTNAYDENILTFVNNIKTVEGGTHLTGFKTVLT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + YA + ++ +D+ +LSVF++EP+F GQTK KL + + V Sbjct: 289 KMMNDYARKLNVLKDKDPNLQGEDVREGLTAVLSVFVKEPQFEGQTKAKLGNEEVYEAVI 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456 LRD + E ++ ++ ++ R+ +K + RK A+ LPGKLADC Sbjct: 349 KVLRDKLPEVFDYHTKELKAIIIKALDAAKARVAAKKAREMIRRKNALENTTLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV + EK+ N+QI ++ Sbjct: 409 TSTDLETTELFIVEGDSAGGSAKQARDREFQAILPLRGKILNVEKSSFEKLLKNEQINNI 468 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + E+LRY K+IIMTDADVDGAHI +LLLT FY+ M LI H+++ Sbjct: 469 IVAIGTGIGDDCKLENLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMTPLINAGHIYIAQ 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+++ K Y + +E ++ L K + K+ I R+KGLGEM QL ET M+ Sbjct: 529 APLYKVELNRKKYYFYSDEELEEFL---KNNDGKKVSIQRYKGLGEMNPDQLWETTMNPE 585 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L+++E+ +++ LMG++ +ER +FI+ A I ++ Sbjct: 586 SRKLIKIEMED----VEEADRVFTILMGSEVEERREFIERHALMITELD 630 >gi|73747960|ref|YP_307199.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1] gi|147668656|ref|YP_001213474.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1] gi|73659676|emb|CAI82283.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1] gi|146269604|gb|ABQ16596.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1] Length = 642 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 258/659 (39%), Positives = 380/659 (57%), Gaps = 24/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D+ + S+ Y AS I++LEGL VR RPGMYIG TD++ LHHL E++ N++DE + Sbjct: 3 DANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG + I+V + +G ++V DNGRGIPV+ H S LE ++T LHAG KF TY++ Sbjct: 63 AGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHS-TTKISALETVMTVLHAGAKFGGKTYQV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS+ V V R I+ Q + RG P +PLE+ V GT F Sbjct: 122 SGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFM 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D +IF +D L + AYL+ ++ +K E+ +YF GG+ Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGIT 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329 +++ NR + + + T +E AI + + + ++ N + T +GGT Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTVDGGT 289 Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR YA ++ + +++ DD+ V I+SV + EP+F GQTK KL Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 +++ + VE+A+ + YL ++P + ++LE I ++ R RK R+ + RK+A+ Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS+ A ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +K Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + +++I ++ AL + + LRY ++++MTDADVDG+HI +LLLTFF++ M L Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I + HLF+ PPL++I G+ + +++ K+ IL + K K++I R+KGLGEM A Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKEAILAQTKST---KVDIQRYKGLGEMSAE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD RTLL V++ N LMG + R FIQ + + ++ Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641 >gi|326802621|ref|YP_004320439.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 660 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 242/671 (36%), Positives = 376/671 (56%), Gaps = 20/671 (2%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 ++ + + + + + Y+AS I++LEGLE VR RPGMYIG T L Sbjct: 2 AENQANNSEHEQPQNHNPKDKNQPNQAGEYNASQIQVLEGLEAVRKRPGMYIGSTGAPGL 61 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134 HHL E++DN++DE +AGYA+ I++ ++ +G +TV+DNGRGIPV+ K + +E + Sbjct: 62 HHLVWEIVDNSIDEALAGYADKIDIKIESDGSITVIDNGRGIPVDIQEK-TGRPAVETVF 120 Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 T LHAGGKF Y++SGGLHGVG SVVNALS +L V V R I+ Q++SRG +S L+ Sbjct: 121 TVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLK 180 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 + +K GT + F DP+IF D +D L K + A+L+ + +E Sbjct: 181 VVGE-SDKTGTVVNFVADPEIFTDTTDYDFQTLNKRVRELAFLNKGLHITLEDRREED-- 237 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313 ++ + + GG+K Y+Q EN+ ++ E + + VE A + Sbjct: 238 ---SQEVAYQYEGGIKEYVQYLNENKEILFEEPVYLEGQMDDI---EVEVAFQYTAGYHS 291 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 S+ N I T EGGTHESG++ ALTR I YA ++ ++ +D+ I+S Sbjct: 292 NFMSFANNIHTFEGGTHESGIKTALTRTINDYARSQNLLKEKDDNLSGEDVREGLTLIVS 351 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 + P+F GQTK KL + + + + + +L + P A ++++ I S+ R Sbjct: 352 IRHPNPQFEGQTKMKLGNSEVRTITDRLFGQHLEQFLYETPNIARQIVDKGILASKARQA 411 Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 ++ RE+ +K+ + LPGKLADCS + ELFIVEG+SAGGSAK R+R QA+L Sbjct: 412 AKRAREMTRKKSGLEISNLPGKLADCSSRVPEECELFIVEGNSAGGSAKLGRDRHFQAIL 471 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKILNV A ++I N++I L A+G + + RY K++IMTDADVDGAH Sbjct: 472 PIRGKILNVEKASMDRILANEEIRSLFTAMGTGWGNDFDVTKARYHKLVIMTDADVDGAH 531 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 I +LLLT Y+ M L++ ++++ PPL+++ QG Y + ++ ++ + + Sbjct: 532 IRTLLLTLIYRYMRPLLDAGYIYIAVPPLYQVRQGKNVHYVNSDQELNDYMKTLAE--RP 589 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 + + R+KGLGEM A QL ET MD +R +L+V ++ ++ +I+ LMG R Sbjct: 590 RPAVQRYKGLGEMDAEQLWETTMDPTQRQMLQVTVDD----AQEADRNISMLMGDLVAPR 645 Query: 671 FKFIQERASFI 681 FI+ A++ Sbjct: 646 RDFIENNATYA 656 >gi|160944260|ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii M21/2] gi|158444442|gb|EDP21446.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii M21/2] Length = 664 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 241/671 (35%), Positives = 370/671 (55%), Gaps = 31/671 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + A+ Y+AS I++L+GLE VR RPGMYIG T E+ LHHL E++DNA+DE +A Sbjct: 7 TSTNADTVTDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149 GY + IEV + + + V DNGRGIPV+ + ++ T LHAGGKF +NS Y+ Sbjct: 67 GYCDHIEVKILKDNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 ++GGLHGVG SVVNA S+ L V V R + Q F RG P L+ V GTR+T Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGDLKCIGTVAEGVTGTRVT 185 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEK 260 F+PDP++F D +D L K + +++L+ VK + ++ + E Sbjct: 186 FKPDPEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRS 245 Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E + GG+K+++ E R ++ + K + RG E A+ + + S Sbjct: 246 EVMCYEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTD---RGVAEIALQYNSSYNELLLS 302 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N + T +GGTHE G + +LTR Y + ++ D+ + ++SV ++ Sbjct: 303 FANNVNTPDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434 E EF GQTK KL + + + V N + + +NP A + + ++ Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 + V RK+A+ R+PGKLADC + TE+FIVEGDSAGGSAK R+ + QA+LPL G Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 K+LNV A ++KI N ++M +V ALGC ++ LRY+KV IM DADVDG+HI +L Sbjct: 483 KMLNVEKARADKIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 +LTFF++ M LIEQ H+++ PPLF++ +G YA+++ + +E ++ Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 +R+KGLGEM QL ET M+ + R ++++ I + ++ LMG + + R +FI Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653 Query: 675 QERASFIDDVG 685 + A + + Sbjct: 654 ETNAQYAK-LD 663 >gi|110679338|ref|YP_682345.1| DNA topoisomerase IV subunit B [Roseobacter denitrificans OCh 114] gi|109455454|gb|ABG31659.1| DNA topoisomerase IV, B subunit [Roseobacter denitrificans OCh 114] Length = 682 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 342/667 (51%), Positives = 447/667 (67%), Gaps = 10/667 (1%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + + ++ + + +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV Sbjct: 22 QTNTKKSSGMNDLLSSGTEATDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEV 81 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN+MDE +AG+A IEV L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGG Sbjct: 82 LDNSMDEAVAGHATRIEVELHEDYAITIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGG 141 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF YE SGGLHGVG SVVNALSD + V VAR +F Q+FSRG+PL P+++ +N Sbjct: 142 KFSGKAYETSGGLHGVGASVVNALSDSMVVQVARNKQLFEQRFSRGVPLGPVQELGPTQN 201 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 +RGT +TF D +IFG F ARL +SKAYL V+ W K P++ Sbjct: 202 RRGTTVTFHADAEIFGA-HRFKPARLFNSIRSKAYLFSGVEIRW---KSAIADGDTPQEA 257 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSY 318 F+FPGGL YL+ L + + F G + +K G VEWAI W + I SY Sbjct: 258 TFHFPGGLSDYLRETLGTATTYADNPFAGSVDFKEKFGEPGKVEWAINWTPSRDGFIQSY 317 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378 CNT+ T EGGTH +G A+ +GIK Y EL+ K+A I +DL ++S FI EP Sbjct: 318 CNTVPTPEGGTHVAGFWAAILKGIKAYGELSNTKKAAQITREDLTSGGCALVSCFIAEPA 377 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTK +L + A + E A+RD FD++L + A +L++++ R+EERLRRR+++E Sbjct: 378 FVGQTKDRLSTEAAAKMTEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKET 437 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 RK+A +KLRLPGKL DC+ GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILN Sbjct: 438 ARKSATKKLRLPGKLTDCTSKDRAGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILN 497 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A S K+ N +I DL +ALGC +++ +DLRYEK+IIMTDADVDGAHIA+LL+TF Sbjct: 498 VLGAASSKLGTNAEISDLCEALGCGMGTKFNLDDLRYEKIIIMTDADVDGAHIAALLMTF 557 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY +M LI+ HL+L PPLFR+TQG K VY EE K LE+ GKGKI++SRFK Sbjct: 558 FYTQMRPLIDAGHLYLACPPLFRLTQGAKRVYCLTEEEKNDWLEK-GLGGKGKIDVSRFK 616 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM A LKET MD R L+RV I++D+ +T D + +LMG K + RF++IQE A Sbjct: 617 GLGEMDAKDLKETTMDPTTRKLIRVSIDEDV--PGETGDLVERLMGKKPELRFQYIQENA 674 Query: 679 SFIDDVG 685 F++++ Sbjct: 675 KFVEELD 681 >gi|6502512|gb|AAF14340.1|U86303_1 topoisomerase IV ParE subunit [Caulobacter crescentus CB15] gi|2749947|gb|AAC38044.1| DNA topoisomerase IV ParE subunit [Caulobacter crescentus CB15] Length = 667 Score = 609 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 368/657 (56%), Positives = 460/657 (70%), Gaps = 14/657 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 SA Y A+ I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A Sbjct: 18 SKTASAPGEYSAADIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFA 77 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV LD +GFL+V D+GRG+PV+ HPK+P KS LE+I+T LHAGGKF YE SGGL Sbjct: 78 KTIEVKLDADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGL 137 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ + VTV R Q FSRG PL P+++ + +GT + F+PD + Sbjct: 138 HGVGASVVNALSERVEVTVWRDGFEHLQVFSRGKPLGPIQQVAPSKK-KGTMVRFKPDDE 196 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG+ F ARL +M +SKAYL V+ WSCD PE F+FP GL +L Sbjct: 197 IFGEGTNFKPARLYRMARSKAYLFRGVQIKWSCDPSRIHDQTPPEA-TFHFPNGLADFLA 255 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGT 329 + + + I+ E F G+ E++G G VEWA+ W E + + SYCNT+ T EGGT Sbjct: 256 ERTKGLTTITPESFAGRIERQGEA-GAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGT 314 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HESG R ALTRG+K YAEL KR I +DD++ A ++SVFI+ PEF GQTK KL + Sbjct: 315 HESGFRAALTRGLKAYAELKGEKRGTIITADDVVAQAGALISVFIKNPEFQGQTKEKLST 374 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 +AQR VE +LRDPFD +L +P A LLE+VIER+EERL+RRK +EV+R +A RKLRL Sbjct: 375 SEAQRFVEASLRDPFDLWLSSSPKNAQALLEFVIERAEERLKRRKDKEVSRASATRKLRL 434 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ + G ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNVASA EK Sbjct: 435 PGKLADCAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTA 494 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N+++ DL+ ALG + ++YREEDLRYE++IIMTDADVDGAHIASLL+TFFY+ M +LI Sbjct: 495 NKELSDLMLALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRG 554 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HLFL PPL+R+ G KS YA D+ HK+++L K K EI RFKGLGEM+ASQLK Sbjct: 555 GHLFLALPPLYRLAHGGKSEYARDDAHKEELLATVFK--GKKPEIGRFKGLGEMMASQLK 612 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-DVG 685 ET MD KRTL RV + + S++D + LMG K + RF+FIQE A F D+ Sbjct: 613 ETTMDPKKRTLARVTLPRHEESVED---LVETLMGRKPELRFRFIQENAEFASADLD 666 >gi|313205819|ref|YP_004044996.1| DNA gyrase subunit b [Riemerella anatipestifer DSM 15868] gi|312445135|gb|ADQ81490.1| DNA gyrase subunit B [Riemerella anatipestifer DSM 15868] gi|315022785|gb|EFT35809.1| DNA gyrase subunit B [Riemerella anatipestifer RA-YM] Length = 644 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 252/656 (38%), Positives = 383/656 (58%), Gaps = 22/656 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y ASSI+ LEG+E VR+RP MYIG + LHHL EV+DN++DE +AGY + I V Sbjct: 2 SNKQYTASSIQSLEGIEHVRLRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ ++V DNGRGIPV+ H K KS LE+++T + AGGKFD +Y++SGGLHGVG+ Sbjct: 62 TIHEGNAISVKDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS TV R+ I+ QK+S+G L +++ + RGT + F+PD IF + Sbjct: 121 SCVNALSTSTIATVYREGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNEL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + A+L+ + + ++ EK E F GGLK +++ N Sbjct: 180 V-YNYDTLSARLRELAFLNKGINITITDERVKDEKG-EFLTETFLSEGGLKEFVEFIDGN 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 R I + + E+ VE A+ + E Y N I T EGGTH +G R AL Sbjct: 238 RESIMENVIFMEGERDDIP---VEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRAL 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +KKYA+ K + I DD ++SV + EP+F GQTKTKL + + V Sbjct: 295 TRTLKKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + ++L +NP EA ++++ V+ + ++ + V RK+ + LPGKL+D Sbjct: 355 DKIVGEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV + K+ N++I + Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKN 474 Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + ALG ++ + LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIEQ Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ SPPL+ + +G K VYA +E+ +++ E GKG +E+ R+KGLGEM QL E Sbjct: 535 YVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKG-VEVQRYKGLGEMNPEQLWE 593 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ R L +V I + + LMG + R +FI++ A + + Sbjct: 594 TTLNPENRILKQVNIENAG----EADRIFSMLMGDEVPPRREFIEKNAVYAK-IDA 644 >gi|39935552|ref|NP_947828.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris CGA009] gi|39649405|emb|CAE27927.1| DNA topoisomerase [Rhodopseudomonas palustris CGA009] Length = 683 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 389/682 (57%), Positives = 496/682 (72%), Gaps = 8/682 (1%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L ++ +S + P +PA + A D Y A+ I +LEGLEPVR RPGMYIG Sbjct: 5 LKASSKSKSGDDLFEGAPKSAAPKAPAKPSG-AEDGYTAADIEVLEGLEPVRRRPGMYIG 63 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 GTDEKALHHLF+EVIDN+MDE +AG+A IEV L +GFLTV DNGRGIPV+ HPKFP K Sbjct: 64 GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTADGFLTVSDNGRGIPVDPHPKFPKK 123 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S LE+I+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS L V VAR + F RG Sbjct: 124 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARGQQLHRMVFERG 183 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 P LE KV N+RGTR+ F+PD +IFG KA F RL KM +SKAYL G VK W C Sbjct: 184 HPKGKLESLGKVNNRRGTRVRFKPDTEIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKC 243 Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 D E+ + +P ++EF+FPGGLK +L + N +L+ +IF GK+ + G H A Sbjct: 244 DPELLKGIEDVPAEDEFHFPGGLKDFLGAAIHNDTLVHPDIFAGKSGRNGAHGACEWAAA 303 Query: 307 AWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMIS 365 + + ++SYCNT+ T +GGTHESGLR AL RG+K +AE KRA SI S+D+M+ Sbjct: 304 WTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERAGQGKRASSITSEDVMVG 363 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 A +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L NP++A KLL++VIER Sbjct: 364 AAIMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVIER 423 Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 +EERLRRR+++E++RKTA++KLRLPGKLADC+ A G+ELFIVEGDSAGGSAKQAR+RS Sbjct: 424 AEERLRRRQEKEISRKTAVKKLRLPGKLADCTSTAAEGSELFIVEGDSAGGSAKQARDRS 483 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QAVLPLRGKILNVASAG +K+ N Q+ DL+QALG T YREEDLRY ++IIMTDAD Sbjct: 484 TQAVLPLRGKILNVASAGKDKVVANAQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDAD 543 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 VDGAHIASLL+TFFY++M LI++ HL+L PPL+R+T G K+VYA D+ HK+++L++ + Sbjct: 544 VDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKEELLKK-E 602 Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 + K+E+ RFKGLGEM+ +QLKET MD KRT+LRV + D T +S+ +LMGT Sbjct: 603 FNANAKVEVGRFKGLGEMMPAQLKETTMDPAKRTMLRVVLLPDDRDG--TANSVERLMGT 660 Query: 666 KADERFKFIQERASFIDD--VG 685 KA+ RF FI E+A F D + Sbjct: 661 KAEARFAFISEKAEFASDELLD 682 >gi|260910948|ref|ZP_05917589.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral taxon 472 str. F0295] gi|260634939|gb|EEX52988.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral taxon 472 str. F0295] Length = 657 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 262/668 (39%), Positives = 395/668 (59%), Gaps = 30/668 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 NQ+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY + Sbjct: 3 ENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCS 62 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLH Sbjct: 63 SIEVTINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALS + V R I+ Q++ G PL P++ + +KRGTR F PDP I Sbjct: 122 GVGVSCVNALSTRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDPNI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + + AYL+ VK + + ++ G E F+ GLK +++ Sbjct: 181 FTTTV-YRWDIIASRMRELAYLNAGVKITLTDLR--PDENGKTRTETFHAKDGLKEFVRY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +RS + ++ KTEK+ +E A+ + + I SY N I T EGGTH +G Sbjct: 238 VDRHRSHLFDDVIYLKTEKQNIP---IEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGF 294 Query: 335 RVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 R+ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 295 RMALTRTLKTYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLG 354 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447 + + V+ A+ + +YL ++P EA + + VI + R+ RK RE ++ + Sbjct: 355 NSEVSGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGG 414 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV K+ Sbjct: 415 GLPGKLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKV 474 Query: 508 RNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY+ Sbjct: 475 FEAESVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYR 534 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEF--KKHGKGKIEISRFK 618 M +I++ HL++ +PPL+ T K Y ++E+ +Q ++++ + I + R+K Sbjct: 535 FMPRIIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYAEGQEDNKSIHVQRYK 594 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET MD +KR L +V I + D + + LMG + R +FI++ A Sbjct: 595 GLGEMNPEQLWETTMDPSKRLLKQVTI----QNAADADEIFSMLMGDDVEPRREFIEQNA 650 Query: 679 SFIDDVGT 686 ++ ++ Sbjct: 651 TYA-NIDA 657 >gi|84501601|ref|ZP_00999773.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597] gi|84390222|gb|EAQ02781.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597] Length = 652 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 347/652 (53%), Positives = 442/652 (67%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +A D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+A Sbjct: 7 TDTAPDTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHATR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRG+P + HPKFP KS LE+IL TLHAGGKF +YE SGGLHG Sbjct: 67 IEVELHEDYSLTVRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKSYETSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR + Q+FSRG+P PL++ N+RGT TF PD +IF Sbjct: 127 VGASVVNALSDSMVVQVARDRKLVEQRFSRGVPQGPLQEIGAAPNRRGTTTTFHPDEEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL K +SKAYL V+ W K + P++ F+FPGGL YL+ Sbjct: 187 -GHHKFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPQEATFHFPGGLADYLKES 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L S F G +++ G VEWAI W + + SYCNT+ T EGGTH +G Sbjct: 243 LSGAMTYSEAPFAGRVSFQERFGVPGRVEWAINWTPVRDGFVQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL N++A I +DLM ++S FIREPEF GQTK +L +++A Sbjct: 303 FWAAVLKGIKAYGELVNNRKAAQITREDLMAGGCALVSCFIREPEFVGQTKDRLATVEAH 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VENA+RD FD++L + A +L++++ R+EER RRR+++E RKTA +KLRLPGKL Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERQRRRQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELF+VEGDSAGGSAK AR+R QA+LPLRGKILNV A S KI NQ+I Sbjct: 423 TDCSATNRDGTELFLVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKIGTNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QA+G +++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M LI++ HL+ Sbjct: 483 NDLCQAMGVGLGTKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFSQMRPLIDKGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG VY DE + LE+ GKGKIE+SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAHRVYVQDEAERDVWLEK-GLGGKGKIEVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV +++ + +T D + +LMG K + RF++IQE A F + + Sbjct: 602 DVKTRKLIRVTVDE--EAPGETGDLVERLMGKKPELRFQYIQENARFAEGLD 651 >gi|119963753|ref|YP_945839.1| DNA gyrase subunit B [Arthrobacter aurescens TC1] gi|119950612|gb|ABM09523.1| DNA gyrase, B subunit [Arthrobacter aurescens TC1] Length = 692 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 251/711 (35%), Positives = 378/711 (53%), Gaps = 46/711 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M +D+ + + P + ++ PD+PA A + Y AS I +LEGLE VR Sbjct: 1 MANDNAETLAVEPEE---------ETVPKPDTPAEAPR----EYGASDITVLEGLEAVRK 47 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL EV+DN++DE +AGY + IEV+L +G + VVD+GRGIPV+ Sbjct: 48 RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCSHIEVTLRADGGVRVVDDGRGIPVDI 107 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP K T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 108 HP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVW 166 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 F+ G K + + GT TF PD IF FD L Q A+L+ Sbjct: 167 RMTFADGGKPQGELVKGEATDVTGTSQTFYPDGTIFES-TEFDFETLRARFQQMAFLNKG 225 Query: 241 VKTCWSCDK----------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SL 282 ++ + ++ E + +P GL Y++ ++ + Sbjct: 226 LRITLTDERPVNRDGDDDLDLDAVATEGEVAAEHRTVVYQYPDGLLDYVKHLNSSKKVEI 285 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + ++ +TE VE A+ W + +Y NTI T EGGTHE G R A+T Sbjct: 286 VHEDVIAFETE-DTERHIAVEVAMQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 344 Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + + + V+ Sbjct: 345 INRYAREKSIIKEKEDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRV 404 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + D +L +NP A ++ I ++ R+ RK R+ R+ + + +PGKL+DCS Sbjct: 405 VTDQLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 464 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+++VEGDSAGGSAK+ RN QA+LPLRGKILNV A +K N ++ ++ Sbjct: 465 KDPSRCEVYLVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 524 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+++M DADVDG HI +LL+T ++ M LIE +++L PP Sbjct: 525 AFGTGIGEDFDIAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 584 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634 L+RI + Y + + + + + + K + I R+KGLGEM ++L +T MD Sbjct: 585 LYRIKWSNAAHDYVYSDRERDETIRKGAAMNKRLPKDNGIQRYKGLGEMDYTELWDTTMD 644 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++RTLL+V ++ L + + LMG + R FIQ+ A + + Sbjct: 645 PDRRTLLQVTMDDAL----AADQTFSVLMGEDVESRRNFIQQNAKDVRFLD 691 >gi|269124283|ref|YP_003297653.1| DNA gyrase subunit B [Thermomonospora curvata DSM 43183] gi|268309241|gb|ACY95615.1| DNA gyrase, B subunit [Thermomonospora curvata DSM 43183] Length = 649 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 246/656 (37%), Positives = 381/656 (58%), Gaps = 24/656 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYA+ IEV+L Sbjct: 3 YDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEALAGYADTIEVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIPV+ HP + +E++LTTLHAGGKFD +Y +SGGLHGVG SVVN Sbjct: 63 DGGVRVADNGRGIPVDEHP-VEKRPAIEVVLTTLHAGGKFDGKSYAVSGGLHGVGSSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V ++ ++ Q ++ P++PL K + ++ GT ITF PDP+IF ++ Sbjct: 122 ALSTRLDAEVRQKGYVWRQSYTWRGPIAPLAK-GEPTDETGTTITFWPDPEIFET-VEWN 179 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIA---EKYGIPEKEEFYFPGGLKTYLQTKLENR 280 L + Q A+L+ + + ++ E P + + + GG+ +++ + Sbjct: 180 FETLSRRLQEMAFLNRGLSITLTDERPGHLGGEDGTEPRRVVYCYEGGISDFVRYLNAKK 239 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + ++ + + +G +VE A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 240 DAVHPDVISFEEHTEG---MSVEVAMQWSGSYTESVHTFANTINTAEGGTHEEGFRSALT 296 Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + +YA ++ ++ +D+ I+S+ + P+F GQTKTKL + +A+ V+ Sbjct: 297 SVVNRYARDKGLLREKDDNLTGEDVREGLTAIISIKLTNPQFEGQTKTKLGNTEARSFVQ 356 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + + + + P +A +++ + + R+ R+ R++ R+ + + LPGKLADC Sbjct: 357 KTVHEHLKDWFDREPGQAKEIINKASQAARARIAARQARDLTRRKSLLESTSLPGKLADC 416 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 EL+IVEGDSAGGSAK RN QA+LP+RGKILNV A +KI N ++ + Sbjct: 417 QSTDPAKCELYIVEGDSAGGSAKGGRNPHFQAILPIRGKILNVEKARIDKILKNAEVQAI 476 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG ++ LRY K+I+M+DAD+DG HI +LLLT ++ M LIE H++L Sbjct: 477 ITALGTGVHDEFDISKLRYHKIILMSDADIDGHHINTLLLTLLFRFMRPLIEAGHVYLSQ 536 Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGEMLASQLK 629 PPL++I +G + YA+ + + I+E K+ + + + RFKGLGEM A +L Sbjct: 537 PPLYKIKWDQRGQDAEYAYSDAERDAIIEAGIAAGKRDPRPRDGVQRFKGLGEMNAQELW 596 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD ++R LL+V ++ + + LMG + R +FIQ A + + Sbjct: 597 DTTMDPSRRVLLQVTLDD----AAQADELFSVLMGEDVEPRREFIQRNAKDVRFLD 648 >gi|261878836|ref|ZP_06005263.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis DSM 17361] gi|270334578|gb|EFA45364.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis DSM 17361] Length = 657 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 259/669 (38%), Positives = 388/669 (57%), Gaps = 30/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 AENLKREENYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV+++ + TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 DHIEVTINEDNSCTVEDNGRGIPVDQHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R + Q++ +G PL P++ +KRGTR F PDP Sbjct: 121 HGVGVSCVNALSARMLSQVFRDGKAYQQEYEKGKPLYPVKVIGNT-DKRGTRQQFWPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + AYL+ +K + + + G +E F+ GLK +++ Sbjct: 180 IFTT-RTFQWDIVARRMRELAYLNAGIKITLTDLR--PNEDGKIRQEVFHAKDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E AI + + E Y N I T EGGTH +G Sbjct: 237 YIDRHRTHLFDDVIYLKTEKQGVP---IEVAIMYNTDYSENLHSYVNNINTIEGGTHVTG 293 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K + I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRQALTRVLKNYADNDPQIAKQIEKAKVEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + V A+ + +YL ++P EA ++ E V+ + R+ RK RE ++ + + Sbjct: 354 GNSEVTGAVNQAVGEALTNYLEEHPTEAKQICEKVVLAATARVAARKARESVQRKSVMTG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 414 GGLPGKLADCSNKDPKLCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHR 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRF 617 + M +IE+ HL++ +PPL++ T +G S Y ++E + +++ + I R+ Sbjct: 534 RFMPKIIEEGHLYIATPPLYKCTYKGKNSEYCYNEGQRLAYFQKYANGEEDSKNIHTQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET MD R L +V I + + ++ + LMG + R +FI+ Sbjct: 594 KGLGEMNPDQLWETTMDPANRLLKQVTIE----NAAEADETFSMLMGDDVEPRREFIEAN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 AAYA-NIDA 657 >gi|261368839|ref|ZP_05981722.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176] gi|282569109|gb|EFB74644.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176] Length = 662 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 234/670 (34%), Positives = 374/670 (55%), Gaps = 31/670 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + Y + I++LEGLE VR RPGMYIG T LHHL E++DN++DE +A Sbjct: 7 TETNRETATDHAYGGAQIQVLEGLEAVRKRPGMYIGSTGPSGLHHLVYEIVDNSIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149 GY IEV++ + V DNGRGIPV+ PK + ++ T LHAGGKF ++S Y+ Sbjct: 67 GYCTHIEVTIKPGNIIQVSDNGRGIPVDIQPKL-GIPAVTVVYTVLHAGGKFGGEDSGYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 ++GGLHGVG SVVNALS+ L V V R + Q F RG P L+K + GT + F Sbjct: 126 VAGGLHGVGASVVNALSEWLTVRVRRDGAEYEQSFQRGKPDGDLKKIGSAAS-TGTLVIF 184 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE-------KEE 262 +PDP++F + + LLK + +A+L+ V+ + ++ +++ + E Sbjct: 185 KPDPEMFQETTQYRYETLLKRLREEAFLNAGVRITLTDERPESDRPAEEKGPENDGRSET 244 Query: 263 FYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSY 318 + GG+++++ E R + ++ ++ K E +G E A+ + + N I S+ Sbjct: 245 MCYEGGIRSFVSYLCERRDLTPLTPQVMYMKGEGQG---AVAEVALQYYDNSYNELILSF 301 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N + T EGGTHE G ++ALTR + +Y + ++ D + ++SV ++E Sbjct: 302 ANNVHTPEGGTHEEGFKLALTRVLNEYGRAKGILKDKDENLSGPDAREGIIAVVSVKLQE 361 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQ 435 +F GQTK KL + + V + Y +NP A +L + ++ + Sbjct: 362 AQFEGQTKAKLGNTFIKGLVNGVVYKALTEYFEENPAVAKAILEKATQAARARAAAKKAR 421 Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 V RK+A+ R+PGKLADC + TELFIVEGDSAGGSAK R+ + QA+LPL GK Sbjct: 422 DLVRRKSALESNRMPGKLADCHEKDPSKTELFIVEGDSAGGSAKMGRDSNIQAILPLWGK 481 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 +LNV A +++I N ++M +V ALG ++ +RY K+ IM DADVDG+HI +L+ Sbjct: 482 MLNVEKARADRIYGNDKLMPVVTALGTGIGDEFDISKVRYHKIFIMADADVDGSHICTLM 541 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 LTFF++ M LIE ++++ PPLF++ +G YA++++ + + E +++ Sbjct: 542 LTFFFRYMRPLIEHGYVYVAQPPLFKLQKGQTVKYAYNDDEMKVLSAEMP-----GAKVN 596 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET M+ + R +++++I + ++ + LMG + + R +FI Sbjct: 597 RYKGLGEMNPDQLWETTMNPDNRVIVQIKIED----AERADEAFSILMGEQVEPRRQFIV 652 Query: 676 ERASFIDDVG 685 + A F ++ Sbjct: 653 KNAKFA-NLD 661 >gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT] gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT] Length = 637 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 379/646 (58%), Gaps = 20/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ IEV + Sbjct: 7 YDESQIQVLEGLEAVRKRPGMYIGTTGIRGLHHLVYEIVDNSIDEALAGFCQNIEVLIHK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D+GRG+PV HPK K T+E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 67 DNCITVKDDGRGMPVGIHPKM-KKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS E +V V R I+SQ + +G +S L ++ GT + F+PD +IF + FD Sbjct: 126 ALSKECNVEVRRDGHIWSQNYKKGKVVSELTIVGDT-DEHGTSVYFKPDDEIFEEV-EFD 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 + L + + A+L+ +K ++E E+ F++ GG+K+++ N+ + Sbjct: 184 YSTLAQRLRELAFLNKGIKIILVDEREGNERRDE-----FHYEGGIKSFVSFLNRNKQTL 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 +E + K VE + + + I S+ N I T EGGTH +G + ALTR + Sbjct: 239 HAEPIYVEGNKDD---YLVEVGLQYNDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVL 295 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA + ++ DD ++SV + +P+F GQTKTKL + + + V++ + Sbjct: 296 NDYARRYGFLKENDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIV 355 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + +L +NP A ++E + + R +K RE RK+ + LPGKLADCS Sbjct: 356 SERVSIFLEENPDTAKIVIEKSLTAARAREAAKKARELTRRKSVLESTSLPGKLADCSSK 415 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI N+ QI ++ A Sbjct: 416 DPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITA 475 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L++ H+++ PPL Sbjct: 476 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPL 535 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ +G YA+ + Q++L + K EI R+KGLGEM A QL +T M+ RT Sbjct: 536 YQVKKGKSVNYAYSDNELQEVLAQIGGKDKNT-EIQRYKGLGEMDAGQLWDTTMNPEHRT 594 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L++V I+ + + LMG K + R +FI+E A + ++ Sbjct: 595 LVKVTIDDAMR----ADEVFTILMGDKVEPRREFIEENAKKVVNLD 636 >gi|57233676|ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195] gi|57224124|gb|AAW39181.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195] Length = 642 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 255/659 (38%), Positives = 386/659 (58%), Gaps = 24/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D + ++NY+AS I++LEGL VR RPGMYIG TD++ LHHL E++ N++DE + Sbjct: 3 DENKAKPGANAENYNASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG + I+V + +G ++V DNGRGIP++ HP S LE ++T LHAG KF TY++ Sbjct: 63 AGVCDRIKVIIYKDGSVSVEDNGRGIPIDIHP-VTKISALETVMTVLHAGAKFGGKTYQV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNAL++ V V R I+ Q + RG P +PLE+ V + GT F+ Sbjct: 122 SGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFK 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D +IF +D L + AYL+ ++ ++ E+ +YF GG+ Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT-------YYFEGGIT 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329 +++ NR + + + T +E AI + + + ++ N + T +GGT Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTIDGGT 289 Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR YA ++ + +++ DD+ V I+SV + EP+F GQTK KL Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 +++ + VE+A+ + YL ++P + ++LE I ++ R RK R+ + RK+A+ Sbjct: 350 GNIEIKSFVESAVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS+ A ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +K Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + +++I ++ AL + + LRY ++++MTDADVDG+HI +LLLTFF++ M L Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I + HLF+ PPL++I G+ + +++ K+ +L + K + K++I R+KGLGEM A Sbjct: 530 ITESHLFIAQPPLYKIKIGSNEHWVYNDAEKETLLSQTKSN---KVDIQRYKGLGEMSAE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD RTLL V++ N LMG + R FIQ + + ++ Sbjct: 587 QLWKTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSKTVKNLD 641 >gi|257783820|ref|YP_003179037.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469] gi|257472327|gb|ACV50446.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469] Length = 647 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 253/659 (38%), Positives = 371/659 (56%), Gaps = 26/659 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y+ + I+ILEGLE VR RPGMYIG T LHHL E++DN++DE +AGY + I+ Sbjct: 2 AKENKYNGTEIKILEGLEAVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCSKIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRGIPV+ HP+ TLE++LT LHAGGKFDN+ Y++SGGLHGVG Sbjct: 62 VTIHPDNSISVEDNGRGIPVDLHPQ-KKIPTLEVVLTILHAGGKFDNNAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L V R I+ F RG + +++ GT ITF PD IF Sbjct: 121 VSVVNALSKKLVAQVKRDGKIYEMVFERGKTVQKMKEIG-TSKSNGTTITFWPDDMIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L Q A+L+ +K ++E+ P + +F + GG+ +++ + Sbjct: 180 TT-YNFDTLRDRLQETAFLNKNLKITLVDEREL-----TPRQVDFQYAGGIIDFVKYLND 233 Query: 279 NRSLIS--SEIFTGKTEKKGT----HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++++ S + + G VE AI W + + S+ N I T+EGG H Sbjct: 234 EKTVLPGLSRPIYIEGKSDPDAPMSQMGEVEVAIQWNTDFSDRTLSFANDIFTEEGGMHL 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT+ + Y ++ + D+ ++SV + +P+F GQTK KL S Sbjct: 294 EGFRTALTKVVNDYGTRQGILKEKDPKLEGGDIREGLTAVISVKLPDPQFEGQTKAKLGS 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLR 448 + + YL ++P +A ++L+ + ++ RL RK RE R+ + Sbjct: 354 SYMRTLTNKIVTQGLSEYLEEHPNQAKEILKKASQAAKGRLAARKAREATRRKGLLESAA 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS A TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV + + Sbjct: 414 LPGKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRAL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++ I L+ A+G ++ E RY K++IMTDADVDG+HI LLLTFFY+ M +I+ Sbjct: 474 SSDTITSLITAIGTGVGDEFSLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMID 533 Query: 569 QKHLFLISPPLFRIT-QGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL++I +G K+ Y + +E LE K K I R+KGLGEM Sbjct: 534 AGYIYVAQPPLYQIKPKGKKNGKYIYTDEEL--ALETKKFEDNTKYTIQRYKGLGEMDPE 591 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T M+ R LL+V I+ L +++ LMG + ++R FIQ A + + Sbjct: 592 QLWATTMEPKNRILLKVTIDDAL----AADRAVSDLMGNQVEKRKDFIQTHAKDVRFLD 646 >gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 637 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 391/649 (60%), Gaps = 25/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGL+PVR RPGMYIG T + LHHL E++DN++DE +AG + I + ++ Sbjct: 8 YDASDIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEIVDNSIDEALAGICDHIIIKINK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 NG + + DNG GIPV+ HP+ KST+E +LT LHAGGKFDNS Y++SGGLHGVG+SVVN Sbjct: 68 NGSVEITDNGSGIPVDIHPQ-TGKSTVETVLTILHAGGKFDNSAYKVSGGLHGVGVSVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS++L TV R I+ Q+F+RGI S LE + ++ GT I F PD IF F Sbjct: 127 ALSNKLVATVKRNGKIYRQEFARGIRKSDLEVIGETNTDETGTTIYFEPDDTIFET-VEF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L K + A+L+ +K + +++ E F++ GG+K++++ + Sbjct: 186 SDEVLAKRFREMAFLNKGIKIEFIDERK-------DLNEVFHYEGGIKSFVEFINAKKKP 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + EI ++ T VE AI + + + S+ N I T+EGGTH SG R ALTR Sbjct: 239 VHDEIIYIDEIREET---AVEIAIQYTDSYSEVVLSFANNINTEEGGTHLSGFRSALTRT 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + Y ++ ++ +D+ ++SV + +P+F GQTK KL + + + V++ Sbjct: 296 LNDYGRKNNIIKEKEENLSGEDVREGISAVISVKLPDPQFEGQTKGKLGNSETRGIVDSV 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 L + +L +NP ++L+ + R RK R+ +K + + LPGKLADC Sbjct: 356 LSEDLAVFLEENPRVGKQILDKALSARRAREAARKARDLTRKKNNLESMTLPGKLADCQN 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + E+F+VEG+SAGGSAK R+ + QA+LPLRGKI+NV A +++ N+ +I ++ Sbjct: 416 DDPKRNEIFLVEGNSAGGSAKDGRDSAYQAILPLRGKIMNVEKARLDRMLNSSEIRAMIT 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G ++ E LRY+K+IIMTDADVDGAHI +LLLTFF++ M LIE+ H+++ P Sbjct: 476 AFGTGIGEEFDLEKLRYDKIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQAP 535 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+ I +GTK + Y H+E+ + L+E+K K+ I R+KGLGEM QL ET M+ + Sbjct: 536 LYGIEKGTKILRYCHNEKELRLALKEYKD---SKVNIKRYKGLGEMDPEQLWETTMNPDN 592 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 R LL+V I+ L + D+ + LMGT+ + R FI E A + D + Sbjct: 593 RLLLKVNIDD----LAEADDTFSILMGTEVEPRRDFITENAVYADYIDA 637 >gi|289431959|ref|YP_003461832.1| DNA gyrase subunit beta [Dehalococcoides sp. GT] gi|288945679|gb|ADC73376.1| DNA gyrase, B subunit [Dehalococcoides sp. GT] Length = 642 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 258/659 (39%), Positives = 379/659 (57%), Gaps = 24/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D+ + S+ Y AS I++LEGL VR RPGMYIG TD++ LHHL E++ N++DE + Sbjct: 3 DANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG + I+V + +G ++V DNGRGIPV H S LE ++T LHAG KF TY++ Sbjct: 63 AGVCDRIKVIMFKDGSVSVEDNGRGIPVGIHS-TTKISALETVMTVLHAGAKFGGKTYQV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNALS+ V V R I+ Q + RG P +PLE+ V GT F Sbjct: 122 SGGLHGVGASVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFM 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D +IF +D L + AYL+ ++ +K E+ +YF GG+ Sbjct: 181 ADSQIFSTT-EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERT-------YYFEGGIT 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329 +++ NR + + + T +E AI + + + ++ N + T +GGT Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTVDGGT 289 Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR YA ++ + +++ DD+ V I+SV + EP+F GQTK KL Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 +++ + VE+A+ + YL ++P + ++LE I ++ R RK R+ + RK+A+ Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS+ A ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +K Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + +++I ++ AL + + LRY ++++MTDADVDG+HI +LLLTFF++ M L Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I + HLF+ PPL++I G+ + +++ K+ IL + K K++I R+KGLGEM A Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKEAILAQTKST---KVDIQRYKGLGEMSAE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD RTLL V++ N LMG + R FIQ + + ++ Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641 >gi|114771101|ref|ZP_01448541.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255] gi|114548383|gb|EAU51269.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255] Length = 661 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 345/655 (52%), Positives = 452/655 (69%), Gaps = 9/655 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +YDASSI++LE +E VR+RPGMYIGGTD++ALHH+ +E+IDN+MDE +AG+A Sbjct: 9 DRPIDKSYDASSIQVLEDMEHVRLRPGMYIGGTDDRALHHMVAEIIDNSMDEAVAGHATW 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L N +TV DNGRGIPV+ HPKFPNKS LEII TL+AGGKF YE SGGLHG Sbjct: 69 IEVELHENFHVTVRDNGRGIPVDMHPKFPNKSALEIIFCTLNAGGKFSGENYETSGGLHG 128 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VA+ +F+ +FSRG+P L+ V+N+RGT +TF PDP+IF Sbjct: 129 VGSSVVNALSDFVRVEVAKNRELFALEFSRGLPQGKLKNLGSVQNRRGTSVTFHPDPEIF 188 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-PEKEEFYFPGGLKTYLQT 275 G F A RL M +SKAYL V+ W D + E P + F FP GL YL Sbjct: 189 GKSLNFKAKRLYAMAKSKAYLFSGVEIRWKVDPKCLEHNDETPITDTFRFPNGLADYLNE 248 Query: 276 KLENRSLISSEIFTGKT---EKKGTHR-GTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330 +L S+ S F GK EK G G +EWAI W + SYCNT+ T EGGTH Sbjct: 249 RLVGSSVYSEIPFAGKVQFSEKFGHSTIGNIEWAINWTPSRDSFTQSYCNTVPTPEGGTH 308 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 ESG A+ +GIK Y EL NK++ SI DD+M ++S FI EP+F GQTK +L + Sbjct: 309 ESGFWSAILKGIKSYGELINNKKSASITRDDVMGGGCALVSCFISEPKFVGQTKDRLATT 368 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A + VEN++RD FD++L N A +L++++ ++EERLRR+++++ RK+A +KLRLP Sbjct: 369 EAIKWVENSVRDHFDNWLASNNKSAGAILDYMVLKAEERLRRKQEKDTARKSATKKLRLP 428 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DCS N GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ N Sbjct: 429 GKLTDCSNNTREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKMSAN 488 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I DL QALG +T +++ +DLRYEK+IIMTDADVDGAHIASLL+TFF+ +M LI+ Sbjct: 489 NEINDLCQALGVQTGTKFNIDDLRYEKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDNG 548 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL++ PPLFR+TQG VY D+ K ++EE G+G+I+ISRFKGLGEM A LKE Sbjct: 549 HLYMACPPLFRLTQGANRVYCMDDIEKNNMIEE-GLGGRGRIDISRFKGLGEMDAKDLKE 607 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ + R L+++ I++D T D +++LMG K + RF++IQE A F++D+ Sbjct: 608 TTMNKSTRQLIQINIDEDE--PGQTDDLVDRLMGKKPELRFQYIQENAKFVEDLD 660 >gi|156744114|ref|YP_001434243.1| DNA gyrase subunit B [Roseiflexus castenholzii DSM 13941] gi|156235442|gb|ABU60225.1| DNA gyrase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 653 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 368/648 (56%), Gaps = 23/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD I++LEG+E VR RPGMYIG TD LH + EV+DN++DEV+AG A +EV++ Sbjct: 22 YDEDQIQVLEGMEAVRRRPGMYIGPTDVNGLHTMVREVVDNSVDEVMAGRATTVEVTIHE 81 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV D+G GIP HPK STL++++T LHAGGKFDN +Y++S GLHGVG+S VN Sbjct: 82 DGSVTVADDGYGIPTGPHPKL-GVSTLQVVMTVLHAGGKFDNKSYKVSSGLHGVGVSAVN 140 Query: 164 ALSDELHVTVA--RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 ALS + V V R + Q++ G+P ++K RGT F PD I Sbjct: 141 ALSAYMRVDVHNARDGMHYYQEYRCGVPQCEVQKVGPTTR-RGTITRFLPDTTIIQTL-D 198 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + AYL+ ++ + +++ E FYF GG+++Y++ ++++ Sbjct: 199 YNFKTLAQRFREMAYLNKGLRFKFVDERDGNEIN-------FYFEGGIRSYVRHLNKDKN 251 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339 ++ F + + VE A+ + E ++ N I +GG H +G R ALT Sbjct: 252 VLHKHPFYVE---RTIDEVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFRSALT 308 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ DD+ ++SV +R+P+F+ QTK KLVS A V Sbjct: 309 RVINAYARSKGFLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPSATGAVN 368 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 D F +L +NP EA +++E I + R+ +K RE RK+A+ LPGKLADCS Sbjct: 369 TVFGDAFSAWLEENPQEARRIVEKCISAARTRIAVQKVRETARKSAMEGFSLPGKLADCS 428 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV + +K+ +N ++ L+ Sbjct: 429 DTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNEVKALI 488 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G Q+ LRY ++I+M DADVDG+HI +LLLTFF++ M +I HL+L P Sbjct: 489 TAIGAGVGDQFDPSKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQP 548 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G Y + + + L + K ++R+KGLGEM A+QL ET M+ Sbjct: 549 PLYRIVHGKTEKYVFTDTERDQYLATLSSAERNKAVVTRYKGLGEMNAAQLWETTMNPLN 608 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V + + ++ LMG R +FIQ A + ++ Sbjct: 609 RLLLQVTLED----AQQADETFTMLMGDLVPPRKRFIQTHALEVRNLD 652 >gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001] gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001] Length = 653 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 260/649 (40%), Positives = 368/649 (56%), Gaps = 22/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A IEV ++ Sbjct: 19 YDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFATRIEVEVNP 78 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGVG VVN Sbjct: 79 DNSVTVTDDGRGIPVDIQAK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGALVVN 137 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGF 222 ALS L VTV R + F RG +P+++ GT++ F+PDP IF + F Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + A+L+ +K ++ + EK F++ GGLK+Y+ + + Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKR-----AATHEKLVFHYEGGLKSYVDFLTKKKEN 252 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341 + E + + KG TVE A+ + + ++ N I T EGGTHE+G + ALTR Sbjct: 253 LLQEPIYVEGQDKGI---TVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRV 309 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + + DD+ ++SV +P+F GQTKTKL + DA+ V+ Sbjct: 310 INDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRT 369 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 D F+ +L+++P + +++ + S+ RL ++ RE +K+ + LPGKLAD + Sbjct: 370 FSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTS 429 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A E+I N++I L Sbjct: 430 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFT 489 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + RY K+IIMTDADVDGAHI +LLLT Y+ M +++ ++++ PP Sbjct: 490 AMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPP 549 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+ QG Y +E Q IL + K +I R+KGLGEM ASQL ET MD + R Sbjct: 550 LYRLRQGKMMRYIDSDEELQDILGQLPPS--PKPDIQRYKGLGEMDASQLWETTMDPDTR 607 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 LLRV + LMG + R KFI+E A F+D ++ Sbjct: 608 RLLRVS----PKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNID 652 >gi|303240062|ref|ZP_07326583.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2] gi|302592331|gb|EFL62058.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2] Length = 641 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 375/655 (57%), Gaps = 20/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N + + +Y+ S+I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 2 SENANLNLSYNESNIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIMDNSIDEALAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE++++ + +T +DNGRGIPV HPK T+E++ T LHAGGKF Y +SGGL Sbjct: 62 TEIEITINPDNSITNIDNGRGIPVGIHPKM-GIPTVEVVHTILHAGGKFGGEGYTVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V V R I+ Q++ RG + LE T+ TF+PD Sbjct: 121 HGVGASVVNALSEYLEVEVYRDGNIYKQRYERGNVATKLEVIGTTEKTG-TKTTFKPDSL 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + F LL + A+L+ + + P ++ ++ GG+ ++++ Sbjct: 180 IFEEM-EFSFDILLNRFRELAFLNKGLMITLIDKR-----PEEPIVKKLHYEGGIISFVE 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N+ +I K G+ VE ++ + + I S+ N I T EGGTH +G Sbjct: 234 YMNRNKGVIQEHPIYIDCSKDGS---NVEISMQYNDTYVENIFSFANNIATTEGGTHLTG 290 Query: 334 LRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + A+T+ YA + ++ +D+ ++SV ++EP+F GQTKTKL + + Sbjct: 291 FKTAITKVFNDYARKYNYLKDNDKNLAGEDIREGLTAVISVKLQEPQFEGQTKTKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE + + +L +NP +L+ + + R RK R+ RK+A+ LP Sbjct: 351 IRSLVEFTVGEKLASFLEENPSVTKTILDKCLTAARAREAARKARDLTRRKSALETTTLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ E++IVEGDSAGGSAKQ R+R QA+LPL GK+LNV + +K+ +N Sbjct: 411 GKLADCSEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLWGKMLNVEKSRIDKVYDN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++++ ++ ALG + E LRY K+IIM DADVDG HI +LLLTF ++ M L+E Sbjct: 471 EKLLPVITALGASIGDDFDVEKLRYHKIIIMADADVDGQHIRTLLLTFMFRYMKPLVEGG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPLF+I +G + YA++E+ + E K K + I R+KGLGEM QL E Sbjct: 531 YVYIAQPPLFKIAKGKEEGYAYNEKQVDNFINE-KGWKKDECSIQRYKGLGEMNPEQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RT+LRVE++ + + LMG K + R +FIQ A + ++ Sbjct: 590 TTMNPETRTMLRVELSDAI----AADEIFTILMGDKVEPRKEFIQTHAKTVTNLD 640 >gi|258541839|ref|YP_003187272.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-01] gi|256632917|dbj|BAH98892.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-01] gi|256635974|dbj|BAI01943.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-03] gi|256639029|dbj|BAI04991.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-07] gi|256642083|dbj|BAI08038.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-22] gi|256645138|dbj|BAI11086.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-26] gi|256648193|dbj|BAI14134.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-32] gi|256651246|dbj|BAI17180.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654237|dbj|BAI20164.1| DNA topoisomerase IV subunit B [Acetobacter pasteurianus IFO 3283-12] Length = 679 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 359/685 (52%), Positives = 472/685 (68%), Gaps = 16/685 (2%) Query: 6 IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65 DLFS PP + S +G+ D+ ++ YDAS+I +LEGLEPVR RPGMY Sbjct: 2 SDLFSNTPPARKSS------TGKTRDAKPGTQADSAQAYDASAIEVLEGLEPVRRRPGMY 55 Query: 66 IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125 IGGTDE ALHHL +E++DNAMDE +AG+AN I+V LD LT+ DNGRGIPV+ HP+FP Sbjct: 56 IGGTDESALHHLAAEILDNAMDEAVAGHANTIDVRLDTENRLTIRDNGRGIPVDPHPRFP 115 Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185 ++S LE+ILTTLHAGGKF Y SGGLHGVG SVVNALS + V +AR T++ Q + Sbjct: 116 DRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSTRMEVEIARDRTVWKQVYE 175 Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 RG P++ LEK N+RGT+I+F+PDP+IFG F +RL ++ +SKA+L V W Sbjct: 176 RGKPVTKLEKVGAAPNRRGTQISFQPDPEIFGTHV-FVPSRLYRLCRSKAFLFRGVTIRW 234 Query: 246 SCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----EKKGTHRG 300 SCD + + P + +FPGGL L +L ++ + + ++ G+ GT G Sbjct: 235 SCDPALIKAGDETPAEATLHFPGGLADSLTDELGPKAPLLTPLWAGEAPLPPAADGTDNG 294 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 VEWA+A+ E P SYCNTI T +GGTHE+G R AL +G++ + + K+A +I + Sbjct: 295 KVEWAVAFLEHGPASLVSYCNTIPTPQGGTHETGFRNALVKGLRAWGDQRSIKKASAITA 354 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D++ + G LSVFIR+P+F GQTK KL S A + VE ALRD FDH+L QNP +A LL Sbjct: 355 EDVLGMSAGRLSVFIRDPQFQGQTKEKLTSSGASKLVETALRDRFDHWLAQNPPQADTLL 414 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 + IER+EERLRR++Q+E RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAK Sbjct: 415 GFAIERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAK 474 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR QAVLPLRGKILNVASA +EK+R NQ++ DL++ALGC + ++ LRY +VI Sbjct: 475 QARNRETQAVLPLRGKILNVASATAEKLRGNQELRDLIEALGCGSGDRFDLSKLRYGRVI 534 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ +LI HL+L PPL+R+TQG KSVYA D+ + + Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPELIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDR 594 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++ K +GKI++SRFKGLGEM LKET MD +RTLLRV + T+ + Sbjct: 595 KMKTEFK-ARGKIDVSRFKGLGEMPPGDLKETTMDPKRRTLLRVITPQ--EDRLSTRQRV 651 Query: 660 NKLMGTKADERFKFIQERASFIDDV 684 LMG K + RF FIQE A +DD+ Sbjct: 652 ESLMGRKPELRFAFIQEHARTVDDL 676 >gi|144898429|emb|CAM75293.1| DNA gyrase subunit B [Magnetospirillum gryphiswaldense MSR-1] Length = 756 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 351/651 (53%), Positives = 462/651 (70%), Gaps = 10/651 (1%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+ IE+ LD Sbjct: 107 EYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHASWIELELD 166 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV DNGRGIPV+ HPKFP+KS LE+ILTTLH+GGKF Y++SGGLHGVG+SVV Sbjct: 167 VSGHATVRDNGRGIPVDPHPKFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGVSVV 226 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD L V VAR ++ Q FS+G PL PL V+N+RGT + F PDP+IFGD+A Sbjct: 227 NALSDSLVVEVARDRQLWRQSFSKGAPLGPLSLVGPVQNRRGTALRFHPDPEIFGDRARL 286 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRS 281 A L +M +SKAYL V+ W CD + + IP ++ +FP GL +L +++R Sbjct: 287 KARTLYRMARSKAYLFRGVQIRWKCDPLLIDDGDDIPAEDILHFPNGLADFLAAVMKDRP 346 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLRVALT 339 L++ F G G VEWA+ W +++ + +YCNT+ T EGGTHE+GLR ALT Sbjct: 347 LVTRGFFAGTAPLADDM-GQVEWALVWPDDDEDGFVNTYCNTVPTPEGGTHEAGLRNALT 405 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +G++ Y +L NK+A + ++D+M A ++S+FIR+P+F GQTK KLVS +A R VENA Sbjct: 406 KGLRGYGDLLGNKKAGQVTAEDVMGGACVLVSLFIRDPQFQGQTKEKLVSTEATRLVENA 465 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D FDH+L +P L+ +IE++EERLR++ +E +RKTA +KLRLPGKLADCS+ Sbjct: 466 IKDHFDHWLSADPESGKALMARLIEKAEERLRKKVAKETSRKTATKKLRLPGKLADCSRQ 525 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + GTELF+VEGDSAGGSAKQ RNR QA+LPL+GKILNVASA ++K+R NQ+I DL++A Sbjct: 526 VNVGTELFLVEGDSAGGSAKQGRNRETQAILPLKGKILNVASASADKLRANQEIKDLMEA 585 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LGC +R + E LRYE++IIMTDADVDGAHIASLL+TFFYQEM +LI HLFL PPL Sbjct: 586 LGCGSRESFDAEKLRYERIIIMTDADVDGAHIASLLMTFFYQEMPELIRTGHLFLAMPPL 645 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +R+ G +YA D+ HK ++++ GK IEISRFKGLGEM +QLKET M+ RT Sbjct: 646 YRLAHGQTVIYARDDSHKDELMKTVFA-GKKNIEISRFKGLGEMPPAQLKETTMNPANRT 704 Query: 640 LLRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I +D KD + + LMG K + RF +IQ+ A F D+ Sbjct: 705 LIRVTIPAGRTEEDQEEAKDVANLVETLMGKKPELRFHYIQKHAKFARDLD 755 >gi|229917451|ref|YP_002886097.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b] gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b] Length = 642 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 248/656 (37%), Positives = 364/656 (55%), Gaps = 20/656 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + N+ Y A I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 2 SNENEKELQAYGADQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V+++ + V DNGRGIPV+ K + +E+I T LHAGGKF Y++SGG Sbjct: 62 CDTITVTVEPGNSIVVEDNGRGIPVDVQKK-TGRPAVEVIFTVLHAGGKFGGGGYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS +L V V R ++ Q F RG+P LE T + F PD Sbjct: 121 LHGVGASVVNALSTKLEVFVRRDGNVYYQSFKRGVPQGELEIVGTTDTTG-TTVRFFPDG 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + +D L + A+L+ ++ D+ + +++ GG+K+Y+ Sbjct: 180 DIFQETLEYDFDLLATRLRELAFLNKGLRIVAKDDR-----NDETIERNYHYEGGIKSYV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ I E K G VE A+ + E I S+ N I T EGGTHE+ Sbjct: 235 EHLNRSKASIHEEPVYVHGTKDGI---EVEIALQYNEGFASNIYSFTNNIPTHEGGTHET 291 Query: 333 GLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR I YA+ + S+ DD+ I+SV P+F GQTKTKL + Sbjct: 292 GFKTALTRSINDYAKRFGLMKEADGSLSGDDVREGLTAIVSVKHPAPQFEGQTKTKLGNA 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 DA+ + D F+ +L++NP +++ ++ +R + RK + L Sbjct: 352 DARTATDTLFSDTFEQFLLENPSVGRLIVDKGLMAARARLAAKRAREMTRRKGILEVSSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS A +EL+IVEGDSAGGSAK R+R QA+LP+RGKI+NV A +KI Sbjct: 412 PGKLADCSSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILA 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ++ ++ ALG ++ RY K+IIMTDADVDGAHI +LLLTFFY+ M L+E Sbjct: 472 NQEVRTIITALGTGIADEFDLSKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLVES 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+ + G +++Y ++ Q + + ++ + + R+KGLGEM QL Sbjct: 532 GYVYIAQPPLYGVKHGKETIYVQNDRELQAAIAQLPENAR--YSVQRYKGLGEMDPEQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R++LRV DL + + LMG + R FIQ A ++ ++ Sbjct: 590 NTTMNPETRSMLRV----DLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNLD 641 >gi|83312449|ref|YP_422713.1| DNA topoisomerase IV subunit B [Magnetospirillum magneticum AMB-1] gi|82947290|dbj|BAE52154.1| Type IIA topoisomerase, B subunit [Magnetospirillum magneticum AMB-1] Length = 666 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 357/655 (54%), Positives = 467/655 (71%), Gaps = 10/655 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A IE Sbjct: 13 PKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAGWIE 72 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L +G TV DNGRGIPV+ HPK+P+KS LE+ILTTLH+GGKF Y++SGGLHGVG Sbjct: 73 LELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVG 132 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L V VAR ++SQ+FSRG+PL PLEK V+N+RGT + F PD +IFG+ Sbjct: 133 VSVVNALSDALTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVIFHPDAQIFGE 192 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +A L +M +SKAYL V+ W CD I + IP ++ +FPGGL +L+ L Sbjct: 193 RAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPGGLTDFLKAVL 252 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLR 335 + R L++ ++F G G VEWA+AW +++ E +YCNT+ T EGGTHE+G R Sbjct: 253 KERPLVTKDMFQGTAPLADDM-GQVEWALAWPDDDEEGFVNTYCNTVPTPEGGTHEAGFR 311 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT+G++ Y E+ NK+A I ++D+M+ A ++S+FIR+P+F GQTK KL S +A R Sbjct: 312 NLLTKGLRSYGEMAGNKKAGQITAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEATRL 371 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VENA++D FDH+L + A LL +IE++E+R RRR+ +E+NRKT ++LRLPGKLAD Sbjct: 372 VENAVKDHFDHWLSGDKASAGALLTRLIEKAEDRARRRQAKEMNRKTPTKRLRLPGKLAD 431 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+++ GTELF+VEGDSAGGSAK RNR QA+LPLRGKILNVASA ++K+R NQ++ D Sbjct: 432 CSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQELKD 491 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L++ALGC R Y +E LRYEK+IIMTDADVDGAHIASLL+TFFYQEM +LI HL+L Sbjct: 492 LMEALGCGARDNYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPELIRNGHLYLA 551 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+ G Y D+ HK+++L+ + K +EISRFKGLGEM +QLKET MD Sbjct: 552 LPPLYRLAHGQIVAYGRDDAHKEELLKTLFAN-KKNVEISRFKGLGEMPPAQLKETTMDP 610 Query: 636 NKRTLLRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++RTLLRV I +D KD + LMG K + RF FIQERA F D+ Sbjct: 611 SRRTLLRVTIPSGRTEEDHEEAKDVARLVESLMGRKPELRFAFIQERARFATDLD 665 >gi|312869236|ref|ZP_07729408.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3] gi|311095257|gb|EFQ53529.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3] Length = 648 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 247/661 (37%), Positives = 377/661 (57%), Gaps = 20/661 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 D + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+ I V ++ + +TV DNGRGIPV+ + K LE + T LHAGGKF Y+ Sbjct: 62 LAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQ-TGKPALETVFTVLHAGGKFGGGGYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207 +SGGLHGVG SVVNALS EL V VARQ + F G + ++ + GT + Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTSMKVINDHLAEDIHGTTV 180 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PDP IF + ++ L + A+L+ +K ++ PE+++F++ G Sbjct: 181 HFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDD-----EPERQDFHYEG 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 G++ Y+ E+++ + + ++ G TVE ++ + + E+ ++ N I T E Sbjct: 236 GIRHYVDYLNEDKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSELLTFTNNIHTYE 292 Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTKT Sbjct: 293 GGTHETGFKMALTRVINDYGHKANILKSNETLSGDDVREGMTAVVSIKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ + Sbjct: 353 KLGNSDARTATDHVFAATFNRFLMEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 EISNLPGKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N++I L ALG + + Y K+IIMTDADVDGAHI +LLLT Y+ M Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDIDKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I ++++ PPL+++ QG Y +E ++++ + K I R+KGLGEM Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD R LLRV+++ + + LMGTK R FI++ A F++++ Sbjct: 591 AEQLWETTMDPENRHLLRVQLDD----AEQANEIFPMLMGTKVGPRRDFIEQNAKFVENL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|326692337|ref|ZP_08229342.1| DNA gyrase, B subunit [Leuconostoc argentinum KCTC 3773] Length = 669 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 376/660 (56%), Gaps = 22/660 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + + +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG Sbjct: 24 SASTVDANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAG 83 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+ I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SG Sbjct: 84 FASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSG 142 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRP 211 GLHGVG SVVNALS +L V V R ++ F G + + K ++V +RGT + F+P Sbjct: 143 GLHGVGASVVNALSTDLDVRVVRDGQVYYMDFQVGRVNTNMVKLDEVPTIERGTIVHFKP 202 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF + ++ LL + A+L+ ++ + + P E FYF GG+K Sbjct: 203 DADIFRETTVYNYNTLLTRVRELAFLNKGLRISITDKR-----PEEPVTESFYFEGGIKE 257 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330 Y+ ++++ E + E+ G VE A+ + + + ++ N I T EGGTH Sbjct: 258 YVNYLNAEKTVVFPEPVYVEGEENGI---VVEVALQYTTDVKDSLRTFTNNINTYEGGTH 314 Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E+G + ALTR I YA + S+ +D+ I+S+ +P+F GQTKTKL Sbjct: 315 ETGFKTALTRVINDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLG 374 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKL 447 + DA++ + + F ++++NP A +++E I + RL ++ RE+ +++ + Sbjct: 375 NSDARQATDRMFSETFSRFMMENPSVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIG 434 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +K+ Sbjct: 435 NLPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKV 494 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I + A+G ++ E Y KVIIMTDADVDGAHI +LLLT FY+ M LI Sbjct: 495 LANEEIRTIFTAMGTGFGDEFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLI 554 Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + ++++ PPL+ + G Y +E + L + + K K + R+KGLGEM Sbjct: 555 DAGYIYIAQPPLYGVALGNSKTREYLDSDEELEDFLAQLPANIKPK--VQRYKGLGEMDF 612 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD R LLRV D + + LMG R +FI+E A F++++ Sbjct: 613 DQLADTTMDPLHRRLLRV----DPADAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668 >gi|325478798|gb|EGC81908.1| DNA gyrase, B subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 633 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 378/649 (58%), Gaps = 23/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +NYDA +IR+LEGLEPVR+RPGMYIG T E+ LHHL EV+DN++DE +AG + I+V Sbjct: 3 ENNYDAGNIRVLEGLEPVRLRPGMYIGSTSERGLHHLVYEVVDNSVDEALAGRCDYIKVI 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +TV D+G GIPV+ HP +KSTLE +LT LHAGGKFD+ Y+ SGGLHGVG+S Sbjct: 63 VSKDNIITVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDKAYQFSGGLHGVGVS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V R I+ FSRG S LE + GT+ITF+PD +IF Sbjct: 122 VVNALSEYLIAEVKRDGHIYKMSFSRGEVTSELEVIGDTKE-TGTKITFKPDAEIFDTTI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + A+L+ V+ + +E E F F GG+ +++ N+ Sbjct: 181 -FDRKTLENRFREMAFLNKGVEIIFEDQRE-------DFSESFKFDGGISEFVKYLNRNK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I I ++ VE + + + I +Y N I T EGGTH SG R ALT Sbjct: 233 TPIMDVIPHFDGMQEDI---EVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + YA + + ++ +D+ I+SV I EP+F GQTK KL + + + V+ Sbjct: 290 RTVNDYARNFKFIKENEDNLQGEDIREGITAIISVKISEPQFEGQTKAKLGNSEVRGAVD 349 Query: 398 NALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + +L +NP A ++ + + R R+ + +++ + LPGKLADC Sbjct: 350 TFVSQRLQAFLEENPKPAKAIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A ++I N+++I + Sbjct: 410 QSTDLAENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAM 469 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A G ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M LI++ H+++ Sbjct: 470 ITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQ 529 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I+ G Y + + + K+L+E +I+R+KGLGEM A QL +T MD + Sbjct: 530 PPLYKISHGRNERYVYTDAERDKVLKEL---DVENYKINRYKGLGEMNADQLWDTTMDPD 586 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV + + S T D+ + LMG K + R FIQE A ++ ++ Sbjct: 587 HRVLLRVNEDFESTS---TDDTFSLLMGEKVEPRRNFIQENAKYVSNID 632 >gi|15829210|ref|NP_326570.1| DNA gyrase subunit B [Mycoplasma pulmonis UAB CTIP] gi|14090154|emb|CAC13912.1| DNA GYRASE SUBUNIT B [Mycoplasma pulmonis] Length = 644 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 258/655 (39%), Positives = 381/655 (58%), Gaps = 23/655 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S ++ Y+AS+I++L+GLEPVR RPGMYIG T +K LHHL E++DN++DE +AG+A+ I Sbjct: 4 SKNNQYNASNIQVLKGLEPVRKRPGMYIGTTGKKGLHHLIWEIVDNSVDETMAGFASQIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++LD + +T+ D+GRGIPV+ HP+ ST+E +LT LHAGGKFD+ +Y++SGGLHGVG Sbjct: 64 ITLDNDNLITIEDDGRGIPVDRHPE-TGISTVETVLTVLHAGGKFDSESYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIF 216 SVVNALS L + R N + +F G + + ++ GT+I+F+PD I Sbjct: 123 ASVVNALSTNLKAWIKRHNKLHYVEFHDGGKILKPLEVISELESDQTGTKISFQPDFSIM 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD + + AYL+ ++ ++ + ++FYF GG+ Y++ Sbjct: 183 EKN-DFDLEVVKDRAKQLAYLNKQLVINVVDNR-------VGYTKQFYFEGGIVDYIKEL 234 Query: 277 LENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESG 333 +++ ++ + + + VE AI + + SY N ILT EGGTHE G Sbjct: 235 NKSKKVLHDQTIYSEGANVLEDNPEVIVEVAIQYTDSYQSNIVSYANNILTIEGGTHEQG 294 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 L R + K+A + +I DD+ I+S+ +P F GQTK KL + D Sbjct: 295 FFDGLVRILNKFATNLGLVKLEEEKLIRDDVKEGISAIISIKHVDPIFEGQTKGKLGNKD 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 A+ V F+ +L +NP+EA ++ VI + R+ RE RK+A LP Sbjct: 355 ARIAVNKIFSKNFERFLNENPVEAKNIILKVINARKARMAGLLAREAVRRKSAFDISSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A +EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ NN Sbjct: 415 GKLADCSSKNAEISELYIVEGNSAGGSAKMGRDREFQAILPLRGKVINAEKNNIEKVFNN 474 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L+ ALG ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ LIE Sbjct: 475 EEIQSLIIALGTGIAEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFKPLIEYG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL++I+ KS YA+++E K++IL K K+ I R+KGLGEM QL + Sbjct: 535 FVYIAQPPLYKISISGKSRYAYNDEQKEEILANIK--DVSKVAIQRYKGLGEMDPDQLWD 592 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD RT+L+V+I + LMG + R +FI++ A ++ ++ Sbjct: 593 TTMDPGIRTMLQVQIED----AAKADWTFTTLMGGEVAPRREFIEQNAKYVKNID 643 >gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM 15897] gi|224525796|gb|EEF94901.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM 15897] Length = 641 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 21/650 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ N I V L Sbjct: 6 EHYDESDIQVLEGLEAVRKRPGMYIGTTSARGLHHLVWEIVDNSIDEALAGFCNKIRVVL 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V+DNGRG+P + K K+T+E I T LHAGGKF Y++SGGLHGVG SV Sbjct: 66 LPGDVVKVIDNGRGMPTGMNVK-TGKNTIETIFTVLHAGGKFGGGGYKVSGGLHGVGASV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VNALS+ L V V R+ I+ Q+F G P+ L+ + GT + F+ DP+IF + Sbjct: 125 VNALSEWLEVYVHREGHIYYQRFENGGTPVGSLKVVGDCEQEETGTTVVFKADPEIFTET 184 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L + + A+L+ +K ++ K +++ GGL+ Y+ +N Sbjct: 185 TVYDYGVLSQRLRELAFLNKGLKLVLEDERLDPAKVDE-----YHYEGGLREYVAFLNKN 239 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 ++ + I + + +VE A+ + + S+CN I T EGGTHE G R+AL Sbjct: 240 KTPLHDHIIDCE---DTMNDISVEIAMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLAL 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I YA+ + S+ DD I+SV +P++ GQTKTKL + + ++ V Sbjct: 297 TRVINNYAKSHNFLKDKDESLSGDDCREGLTAIVSVKHPDPQYEGQTKTKLGNAEVRKIV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455 L + D +L++NP A +++ V S+ R+ ++ RE+ RKTA+ LPGKLAD Sbjct: 357 STILANALDKFLLENPDTAKIIMDKVTLASKARMAAKRAREMTRRKTALDVSNLPGKLAD 416 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E+FIVEGDSAGGSAK R+R QA+LPLRGKILNV A E+I N +I Sbjct: 417 CSSKDPSECEIFIVEGDSAGGSAKSGRDRKIQAILPLRGKILNVEKARLERILGNAEIRS 476 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A G ++ LRY K++IMTDADVDG HI L+LTF Y+ + LIE +++ Sbjct: 477 MITAFGTGIGDEFDINKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGYVYAA 536 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + G Y + + K+ EE + K I R+KGLGEM QL ET M+ Sbjct: 537 QPPLYLLRHGKDDHYLYSDYELDKLKEELGPN--AKYTIQRYKGLGEMNPEQLWETTMNP 594 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L R++++ + + LMG + + R FI+E A +++++ Sbjct: 595 ENRVLNRIQLDDAM----QADQLFDMLMGERVEPRRDFIRENAKYVENLD 640 >gi|253681222|ref|ZP_04862020.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873] gi|253562460|gb|EES91911.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873] Length = 636 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 380/646 (58%), Gaps = 21/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I+V + Sbjct: 7 YDESQIQVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEIVDNSIDEALAGFCQNIKVYIHK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV D+GRG+PV HPK + T+E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 67 DNSVTVKDDGRGMPVGIHPKM-KRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS V V R+ I+ Q++ +G S LE +++GT + F PD +IF + FD Sbjct: 126 ALSKYCKVEVRREGHIWMQEYKKGKVASELEIIGD-SDEKGTLVYFEPDDEIFEEV-QFD 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ ++ ++E +K +EF++ GG+K+++ N+ + Sbjct: 184 YDTLAHRLRELAFLNKGIRITLIDEREEEKK------QEFHYEGGIKSFVSYLNRNKQTL 237 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + K VE A+ + + I ++ N I T EGGTH +G + ALTR + Sbjct: 238 HEDPIYVEGNKDD---YLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRAL 294 Query: 343 KKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA + ++ DD ++SV + +P+F GQTKTKL + + + V++ + Sbjct: 295 NDYARRYGYLKEADKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIV 354 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + +L +NP A ++E + + R +K RE RK+ + LPGKLADCS Sbjct: 355 FERVSEFLEENPNTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSK 414 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI N++QI ++ A Sbjct: 415 DPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITA 474 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L+E H+++ PPL Sbjct: 475 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPL 534 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ +G Y++ + Q++L E K EI R+KGLGEM A+QL +T M+ RT Sbjct: 535 YQVKKGKIIRYSYSDNELQQVLTEIGGKDKNT-EIQRYKGLGEMDATQLWDTTMNPEHRT 593 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L++V I+ + + LMG K + R +FI+E A + ++ Sbjct: 594 LVKVTIDDAMR----ADEIFTILMGDKVEPRREFIEENAKRVVNLD 635 >gi|28896290|ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogenes SSI-1] gi|161485752|ref|NP_664280.2| DNA gyrase subunit B [Streptococcus pyogenes MGAS315] gi|73919729|sp|Q8K840|GYRB_STRP3 RecName: Full=DNA gyrase subunit B gi|28811541|dbj|BAC64473.1| putative DNA gyrase B subunit [Streptococcus pyogenes SSI-1] Length = 650 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 377/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF +Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQVK-TGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|216263495|ref|ZP_03435490.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1] gi|215980339|gb|EEC21160.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1] Length = 634 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EVIDN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVIDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V + R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 YQSESYYIDGLINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLKIINLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M +LIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y +DE+ K+K L + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLNSIEAKNRNSILLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|15614703|ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125] gi|10174759|dbj|BAB05859.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125] Length = 655 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 235/649 (36%), Positives = 363/649 (55%), Gaps = 34/649 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY + I V++ Sbjct: 9 YNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGSNINVTIHK 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + ++V D GRG+P H K T E+ILT LHAGGKF Y SGGLHGVG SVVN Sbjct: 69 DQSVSVRDEGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGASVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V + R ++ Q+F G S +K+ + GT I F+PDP +F F+ Sbjct: 127 ALSEWLIVEIKRDGWVYEQRFENGGKPSTTLEKKGKTRQTGTTIHFKPDPTVFSTTN-FN 185 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + + A+L +K ++ + E F++ G+K +++ E++ + Sbjct: 186 VETLSERLREAAFLLKGLKIELVDLRDDTK-------EVFHYEDGIKAFVEYLNEDKETL 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + E G +E+A + + + S+ N + T +GGTHE G + A+TR + Sbjct: 239 HPVV-FFNGESNGI---EIEFAFQFNDGYTENVLSFVNNVRTKDGGTHELGAKTAMTRAV 294 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 +YA + ++ ++ D+ ++SV + E +F GQTK KL + +A+ V++ Sbjct: 295 NEYARKAKLLKEKDKNLDGSDIREGFTALISVRVPEEKLQFEGQTKGKLGTPEARSAVDS 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLAD 455 + + + +NP ++ L+ I+ ++ R RK RE R + R GKL Sbjct: 355 LVSEKLSFFFEENPEMSSMLIRKAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTP 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 415 AQSKNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRT 474 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G + + +D+ Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E +++ Sbjct: 475 IIHTIGAGVGADFTLDDVNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIA 534 Query: 576 SPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL+++++G + V YA DE+ +K +++ + I R+KGLGEM A+QL ET Sbjct: 535 LPPLYKVSKGSGAKEVVEYAWDEDGLKKAIKKVGR----GYTIQRYKGLGEMNATQLWET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD RTL+RV I+ + ++ LMG K + R K+I+ +F Sbjct: 591 TMDPETRTLIRVRIDD----AARAEKRVSTLMGDKVEPRRKWIESHVAF 635 >gi|256820281|ref|YP_003141560.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271] gi|256581864|gb|ACU92999.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271] Length = 658 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 259/668 (38%), Positives = 378/668 (56%), Gaps = 33/668 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q S Y A +I+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AGY + Sbjct: 7 NEQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVGTRGLHHLVYEVLDNSIDEALAGYCD 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ + +TV DNGRGIPV+ H K S L++++T + AGGKFD +Y++SGGLH Sbjct: 67 TISVTINEDNSITVEDNGRGIPVDVHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLH 125 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALSD L TV R I+ Q++ RG+ + P+++ +KRGT++TF PD I Sbjct: 126 GVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKRGTKVTFHPDEVI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L + AYL+ + + + EK E+FY GLK +++ Sbjct: 185 FEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSQNGLKEFVKF 243 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334 NR I + EK G VE A+ + + E Y N I T EGGTH G Sbjct: 244 LDGNRMPIIGNVIAMDGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGF 300 Query: 335 RVALTRGIKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 R+ LTR +K YA+ + K + I DD ++SV + EP+F GQTKTK Sbjct: 301 RMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTK 360 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445 L + + V A+ + YL +NP +A ++E VI ++ R RK RE+ ++ + + Sbjct: 361 LGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMS 420 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ ELF+VEGDSAGG+AKQ RN+ QA+LPLRGKILNV A Sbjct: 421 GGGLPGKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQH 480 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 K+ ++ +I ++ ALG ++ + LRY KVIIM DADVDG+HI +L+LTFF+ Sbjct: 481 KVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFF 540 Query: 561 QEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 + M +LIE H+++ +PPL+ + + YA +++ + + E G + I R+K Sbjct: 541 RYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM-----GNVNIQRYK 595 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL +T M+ RTL +V I+ + + LMG + R +FI++ A Sbjct: 596 GLGEMNDHQLWDTTMNPEHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNA 651 Query: 679 SFIDDVGT 686 + + Sbjct: 652 KYAK-IDA 658 >gi|219685160|ref|ZP_03539980.1| DNA gyrase, B subunit [Borrelia garinii Far04] gi|219673256|gb|EED30275.1| DNA gyrase, B subunit [Borrelia garinii Far04] Length = 634 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYAASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIDVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +LE I + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY KVIIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y +DE+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYCYDEKEKEKFLDSIETKNRNNISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|114569878|ref|YP_756558.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10] gi|114340340|gb|ABI65620.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10] Length = 672 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 361/695 (51%), Positives = 488/695 (70%), Gaps = 34/695 (4%) Query: 1 MTD--DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M++ DLFS P + + Y A+ I +LEGLE V Sbjct: 1 MSNQNSDSDLFSGAPAPTPSKAPAPG-------------------YSAAHIEVLEGLEAV 41 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIGGTDE+A HHLF+E++DN+MDE +AG+A+ IEV++D + ++TV DNGRGIPV Sbjct: 42 RRRPGMYIGGTDERAYHHLFAEILDNSMDEAVAGWADRIEVAVDEDSYITVTDNGRGIPV 101 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 + HPK+P+KS LE++LT LHAGGKF +S Y+ SGGLHGVGISVVNALS+ L V VAR+ T Sbjct: 102 DPHPKYPDKSALEVVLTILHAGGKFSDSAYKTSGGLHGVGISVVNALSEVLDVEVAREKT 161 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 +++Q +SRG+P PL K N+RGT+I F PD +IFGDK AR+ M +SKA+L Sbjct: 162 LWTQSYSRGLPQGPLVKVGPAPNRRGTKIRFLPDTQIFGDKMSVKPARIYAMARSKAFLR 221 Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 VK W C + E IP + FPGGL + E R+L+++E F+G+ E++ Sbjct: 222 RGVKIQWRCAPSLVEGTDIPADDILCFPGGLADRMAELAEKRALVTAEGFSGRVERED-G 280 Query: 299 RGTVEWAIAWC------EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK 352 G VEWAI W + + SYCNT+ T +GGTHE GLR AL++G++ YAE T K Sbjct: 281 AGGVEWAITWSGNGYGGDADGFCQSYCNTVPTPQGGTHEQGLRAALSKGLRAYAEHTHAK 340 Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 +A I ++D++ A ++SVFI +PEF GQTK +L + +A + VE A+RD FDH+L +P Sbjct: 341 KASQITAEDVLGGAGALVSVFIGDPEFQGQTKERLATPEATKLVETAVRDQFDHWLAGSP 400 Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA KL+E+ IER+++R+RRRK++ V R+TA R+LRLPGKLADCS+ A GTELF+VEGD Sbjct: 401 KEAAKLVEFAIERADDRMRRRKEKNVKRQTASRRLRLPGKLADCSRADADGTELFLVEGD 460 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAKQAR+R QA+LPLRGKILNVASA ++KI NQ+I DL+ ALGC T S+++ ED Sbjct: 461 SAGGSAKQARSRQTQAILPLRGKILNVASATADKISANQEISDLLLALGCLTGSKFKLED 520 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592 LRYE+V+IMTDADVDGAHIA+LL+TFFY+ M +LI LFL PPL+R+TQG++++YA Sbjct: 521 LRYERVVIMTDADVDGAHIAALLITFFYRSMPELIHSGRLFLAQPPLYRLTQGSRTLYAR 580 Query: 593 DEEHKQKIL-EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 D+ H+++++ +EFK + KIE+ RFKGLGEM SQLK+T MD RTL RV I++ N Sbjct: 581 DDAHREQLIRDEFKAN--SKIEVGRFKGLGEMTPSQLKQTTMDPAVRTLARVVIDE--ND 636 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685 + + + LMG K + RFKFIQ+ A+F+ +D+ Sbjct: 637 MPTLEALVETLMGKKPEARFKFIQDNATFVTEDLD 671 >gi|296268004|ref|YP_003650636.1| DNA gyrase subunit B [Thermobispora bispora DSM 43833] gi|296090791|gb|ADG86743.1| DNA gyrase, B subunit [Thermobispora bispora DSM 43833] Length = 647 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 251/656 (38%), Positives = 363/656 (55%), Gaps = 24/656 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDASSI +LEGLE VR RPGMYIG T E+ LHHL E++DNA+DE +AG+ + I+V+L Sbjct: 2 SYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAVDEALAGHNDRIDVTLL 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D GRGIPV P + +E++ T LHAGGKFD +Y +SGGLHGVG SVV Sbjct: 62 ADGGVRVADRGRGIPVGIVP-SEGRPAVEVVFTVLHAGGKFDRKSYAVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V ++ Q + + P PL+K + + GT +TF PD IF + Sbjct: 121 NALSKRLEVEVRTDGHVWRQSYVQAKPTGPLQK-GEPTDDHGTTVTFWPDETIFET-TTW 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + Q A+L+ + + ++ G P+ +++ GGL ++ + Sbjct: 179 NFETLSRRFQEMAFLNKGLTITLTDER-PEYINGEPKVVTYHYEGGLADFVTYLNSKKEP 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I + + G +VE A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 238 IHGSVIYFEEHGDGI---SVEVAMQWNASYTESVYTFANTINTAEGGTHEEGFRAALTSV 294 Query: 342 IKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +Y + + ++ DD+ I+SV + P+F GQTKTKL + +A+ V+ Sbjct: 295 VNRYAREQRYLKEGKDDNLTGDDVREGLAAIISVKLANPQFEGQTKTKLGNTEAKSFVQK 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADC 456 A D + +NP EA +++ I+ S R+ R+ R++ R+ ++ LPGKLADC Sbjct: 355 ACNDHLRDWFERNPGEAKEIINKAIQASRARIAARQARDLTRRKSLLESGSGLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELFIVEGDSAGGSAK R+ QA+LP+RGKILNV A +K+ N +I L Sbjct: 415 QWSDPEKCELFIVEGDSAGGSAKGGRDPRFQAILPIRGKILNVEKARIDKVLRNNEIQAL 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + LRY K+I+M DADVDG HI +LLLT ++ M LIE H++L Sbjct: 475 ITALGTGVHDDFDISKLRYHKLILMADADVDGQHITTLLLTLLFRFMRPLIEAGHVYLAQ 534 Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLK 629 PPL++I +G + YA+ + + I+E GK + RFKGLGEM ASQL Sbjct: 535 PPLYKIKWDRKGEDASYAYSDRERDAIIEAGIAQGKRDPRLHDGVQRFKGLGEMNASQLW 594 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R L +V ++ + + LMG + R +FI A + + Sbjct: 595 ETTMNPETRILRQVTLDD----AAQADELFSVLMGEDVEARRQFIIRNARDVRFLD 646 >gi|329938633|ref|ZP_08288029.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045] gi|329302124|gb|EGG46016.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045] Length = 691 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 263/703 (37%), Positives = 380/703 (54%), Gaps = 31/703 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D P ++ S++ S S YDAS+I +LEGL+ VR Sbjct: 1 MADSGN------PNENIPSTDAGAHDPGPTSSSGSPAGEGSPAYDASAITVLEGLDAVRK 54 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV Sbjct: 55 RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGI 114 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P K +E++LT LHAGGKF Y +SGGLHGVG+SVVNALS ++ V V + Sbjct: 115 VP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVEVRTDGYRW 173 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 +Q + G+P +PL K E GT +TF D IF + L + Q A+L+ Sbjct: 174 TQDYKLGVPTAPLVKNEATEE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKG 231 Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289 + + ++E A++ + +++ GG+ +++ + I Sbjct: 232 LTIRLTDERESAKATSGADEAGADEKEEVKSVTYHYEGGIVDFVKYLNARKGEIVHPSVI 291 Query: 290 GKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 + ++E A+ W E + S+ NTI T EGGTHE G R ALT I +YA Sbjct: 292 DIEAEDKDRMLSLEVAMQWNNGYSEGVYSFANTIHTHEGGTHEEGFRAALTGLINRYARD 351 Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + ++ ++ DD+ I+SV + EP+F GQTKTKL + +A+ V+ + + Sbjct: 352 KKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTD 411 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465 +L +NP EA ++ I+ + R+ RK R++ R+ + LPGKL+DC N E Sbjct: 412 WLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCE 471 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 +FIVEGDSAGGSAK RN QA+LP+RGKILNV A +KI NQ+I L+ A G Sbjct: 472 IFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVH 531 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + E LRY K+I+M DADVDG HI +LLLTF ++ M L+E H+FL PPLF+I G Sbjct: 532 EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLFKIKWG 591 Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 YA+ + + ++E + +GK I RFKGLGEM A +L+ T MD + R L + Sbjct: 592 RDDFEYAYSDRERDALIELGRNNGKRVRDDSIQRFKGLGEMNAEELRITTMDVDHRVLGQ 651 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ D + LMG + R FIQ A + + Sbjct: 652 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 690 >gi|300172307|ref|YP_003771472.1| DNA gyrase subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299886685|emb|CBL90653.1| DNA gyrase, B subunit [Leuconostoc gasicomitatum LMG 18811] Length = 669 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 255/659 (38%), Positives = 377/659 (57%), Gaps = 22/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A +++ +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 25 ASTVNASAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 84 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I V+++ + +TV D+GRGIPV+ K KS LE + T LHAGGKF Y++SGG Sbjct: 85 ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKSALETVFTVLHAGGKFGGGGYKVSGG 143 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS L V V R N ++ F G + S ++ EK RGT + F PD Sbjct: 144 LHGVGASVVNALSTNLDVRVIRDNQVYYMDFKLGRVNTSIVKLDEKPTIDRGTIVHFNPD 203 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + F+ LL + A+L+ ++ + ++ P E F+F GG+K Y Sbjct: 204 SDIFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLEV-----PATESFHFEGGIKEY 258 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 + +++I E + E+ G VE A+ + + + ++ N I T EGGTHE Sbjct: 259 VGYLNSEKTVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 315 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G + ALTR I Y + S+ +D+ I+S+ +P+F GQTKTKL + Sbjct: 316 TGFKTALTRVINDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFEGQTKTKLGN 375 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448 DA++ + + F ++++NPI A ++++ I + RL ++ RE+ +++ + Sbjct: 376 SDARQATDRMFSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTRKQSGLEIGN 435 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +++ Sbjct: 436 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDRVL 495 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + E Y KVIIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 496 GNEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 555 Query: 569 QKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + G Y +E + L + + K K + R+KGLGEM Sbjct: 556 AGYIYIAQPPLYGVALGNSKTREYLDTDEELEAYLTQLPSNIKPK--VQRYKGLGEMDFD 613 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MD R LLRV D + + + LMG R +FI+E A F++++ Sbjct: 614 QLADTTMDPINRRLLRV----DPSDAEAADSIFDMLMGDDVAPRREFIEENAVFVENLD 668 >gi|325843401|ref|ZP_08167959.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1] gi|325489323|gb|EGC91697.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1] Length = 644 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 243/658 (36%), Positives = 364/658 (55%), Gaps = 38/658 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DEV+AGY + I+V++ Sbjct: 6 NYNEDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAIDEVLAGYGDHIKVTIH 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N ++V D+GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 ENNSISVQDSGRGVPTGMHK--SGKPTPEVIFTVLHAGGKFGTGGYKTSGGLHGVGASVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ + VT+ R ++ Q+F G P++ L+ K + GT ++F+PDP+IF Sbjct: 124 NALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSKE-TGTLVSFKPDPEIFSTTV- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + L + + A+L +K + E E FY+ G+K+++ E + Sbjct: 182 YSFDILSERLRESAFLLKGLKIELIDLRNDKE-------ETFYYEDGIKSFVSYLNEGKD 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ + E + V++A + I S+ N + T +GGTHE+G + LTR Sbjct: 235 TLH-DVVYFEGE---SQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTR 290 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 291 IFNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 +N + + + +N AT+L++ I+ ++ R RK RE R +K L GKL Sbjct: 351 DNVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RNR+ QA+LPLRGK++N A E I N++I Sbjct: 411 TPAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + + D+ Y+KVIIMTDAD DGAHI LLLTFF++ M +L+E ++ Sbjct: 471 NTMIYTIGAGVGANFELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530 Query: 574 LISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K YA +E ++ + K + R+KGLGEM A QL Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDEELGSVIAKVGK----GYTLQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 +T M+ RTL++V I D + LMG K + R ++I++ F DD Sbjct: 587 DTTMNPETRTLIQVSIED----AADADHRVTTLMGDKVEPRREWIEQNVDFTMEDDYD 640 >gi|315223358|ref|ZP_07865217.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga ochracea F0287] gi|314946689|gb|EFS98678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga ochracea F0287] Length = 658 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 258/668 (38%), Positives = 375/668 (56%), Gaps = 33/668 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 Q S Y A +I+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AGY + Sbjct: 7 NEQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVSTRGLHHLVYEVLDNSIDEALAGYCD 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ + +TV DNGRGIPV+ H K S L++++T + AGGKFD +Y++SGGLH Sbjct: 67 TISVTINEDNSITVEDNGRGIPVDVHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLH 125 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+S VNALSD L TV R I+ Q++ RG+ + P+++ +KRGT++TF PD I Sbjct: 126 GVGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGDT-DKRGTKVTFHPDEVI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L + AYL+ + + + EK E+FY GLK +++ Sbjct: 185 FEQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSQNGLKEFVKF 243 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGL 334 NR I + EK G VE A+ + + E Y N I T EGGTH G Sbjct: 244 LDGNRMPIIGNVIAMDGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGF 300 Query: 335 RVALTRGIKKY--------AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 R+ LTR +K Y K + I DD ++SV + EP+F GQTKTK Sbjct: 301 RMGLTRTLKAYADKSGLLEKMNKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTK 360 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445 L + + V A+ + YL +NP +A ++E VI ++ R RK RE+ ++ + + Sbjct: 361 LGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMS 420 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ ELF+VEGDSAGG+AKQ RN+ QA+LPLRGKILNV A Sbjct: 421 GGGLPGKLADCSEEDPAKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQH 480 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 K+ ++ +I ++ ALG ++ + LRY KVIIM DADVDG+HI +L+LTFF+ Sbjct: 481 KVFDSDEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFF 540 Query: 561 QEMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 + M +LIE H+++ +PPL+ + + YA +++ + + E G + I R+K Sbjct: 541 RYMRELIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDALSAEM-----GNVNIQRYK 595 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL +T M+ RTL +V I+ + + LMG + R +FI++ A Sbjct: 596 GLGEMNDHQLWDTTMNPEHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNA 651 Query: 679 SFIDDVGT 686 + + Sbjct: 652 KYAK-IDA 658 >gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925] gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925] Length = 635 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 253/646 (39%), Positives = 376/646 (58%), Gaps = 22/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I+V + Sbjct: 7 YDESQIQVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEIVDNSIDEALAGFCQNIKVYIHK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 N +TV D+GRG+PV HPK + T+E+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 67 NNSVTVKDDGRGMPVGIHPKM-KRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS V V R+ ++ Q++ +G S LE RGT + F PD +IF + FD Sbjct: 126 ALSKYCKVEVRREGHVWMQEYKKGKVASELEVIGDSEE-RGTLVYFEPDDEIFEEV-EFD 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + A+L+ + ++E E +EF++ GG+K+++ N+ + Sbjct: 184 YDTLSHRLRELAFLNKGTRIILVDEREEKE-------QEFHYEGGIKSFVSYLNRNKQTL 236 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E + K VE A+ + + I ++ N I T EGGTH +G + ALTR + Sbjct: 237 HEEPIYVEGNKDD---YLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRVL 293 Query: 343 KKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA + ++ DD ++SV + +P+F GQTKTKL + + + V++ + Sbjct: 294 NDYARRYGYLKETDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDSIV 353 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + +L +NP A ++E + + R +K RE RK+ + LPGKLADCS Sbjct: 354 SERVSEFLEENPDTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSK 413 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI N++QI ++ A Sbjct: 414 DPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITA 473 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + E +RY ++IIMTDADVDGAHIA+LLLTFFY+ M +L+E H+++ PPL Sbjct: 474 FGAGIGKDFDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPL 533 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ +G Y++ + +++L E K EI R+KGLGEM A+QL +T M+ RT Sbjct: 534 YQVKRGKVIRYSYSDNELKQVLTELGGKDKNT-EIQRYKGLGEMDATQLWDTTMNPEHRT 592 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L++V I+ + + LMG K + R +FI+E A + ++ Sbjct: 593 LVKVTIDDAMR----ADEVFTILMGDKVEPRREFIEENAKKVVNLD 634 >gi|297158796|gb|ADI08508.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1] Length = 680 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 257/651 (39%), Positives = 375/651 (57%), Gaps = 15/651 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ IEV++ Sbjct: 36 SYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIEVTIL 95 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + VVDNGRGIPV+ HP K +E++LT LHAGGKF Y +SGGLHGVG+SVV Sbjct: 96 PDGGVRVVDNGRGIPVDLHP-VEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 154 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V V R ++Q + G+P +PL K E+V GT +TF DP +F + Sbjct: 155 NALSTKVSVEVKRDGYRWTQDYKLGVPTAPLAKNEQVTE-TGTTVTFWADPDVFET-TEY 212 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 L + Q A+L+ + + ++ ++ G P + + GG+ ++Q + Sbjct: 213 SFETLSRRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVTYCYEGGIVDFVQYLNSRKG 272 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + G + +VE A+ W + + S+ NTI T EGGTHE G R ALT Sbjct: 273 ELVHPTIIGFEAEDKERMLSVEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGFRAALTY 332 Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I KYA + ++ ++ +D+ I+SV + EP+F GQTKTKL + +A+ V+ Sbjct: 333 LINKYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQK 392 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L +NP EA ++ I+ + R+ RK R++ R+ + LPGKLADC Sbjct: 393 IVHEHLADWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLETASLPGKLADCQ 452 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N E+FIVEGDSAGGSAK RN QA+LP+RGKILNV A +KI N ++ L+ Sbjct: 453 SNDPAKCEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARVDKILQNNEVQALI 512 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+I+M DADVDG HI +LLLTF ++ M L+E H+FL P Sbjct: 513 SAFGTGVHEDFDISKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRP 572 Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMD 634 PL++I G YA+ + + +++ ++ GK + + RFKGLGEM A +L+ T MD Sbjct: 573 PLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMD 632 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L +V ++ D + LMG + R FIQ A + + Sbjct: 633 VDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFIQRNAKDVRFLD 679 >gi|307278016|ref|ZP_07559100.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860] gi|306505413|gb|EFM74599.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860] Length = 685 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 242/657 (36%), Positives = 358/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY N Sbjct: 2 AKKINNEYNDASIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + + V D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQKDNSICVADSGRGMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L V + R + ++F G P+ L+K K + + GT +TF PD I Sbjct: 120 VGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK + + K E F++ G+K ++ Sbjct: 180 FSTTN-FSYEILAERLRESAFLLKGVKITLTDGRGEELKE-----EVFHYEEGIKEFVAY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + K+G VE A + + E S+ N + T +GGTHE G+ Sbjct: 234 LNEEKDTLTPVV-YFSGAKEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + ++T+ +YA ++ ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KTSMTKAYNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 LARTVVDNVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G KSV YA + +++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGTGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I++ F Sbjct: 586 NAEQLWETTMDPETRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 638 >gi|298291347|ref|YP_003693286.1| DNA topoisomerase IV subunit beta [Starkeya novella DSM 506] gi|296927858|gb|ADH88667.1| DNA topoisomerase IV, B subunit [Starkeya novella DSM 506] Length = 680 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 405/689 (58%), Positives = 510/689 (74%), Gaps = 14/689 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ ++ DLFS PP + + K + P A + Y A+ I +LEGLEPVR Sbjct: 1 MS-NADDLFSAAPPAPRPARPTAKAAARGEAPPP-----AENGYTAAHIEVLEGLEPVRR 54 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDN MDE +AG+A+ I+V L +GFL V DNGRGIP+E+ Sbjct: 55 RPGMYIGGTDEKALHHLFAEVIDNCMDEAVAGHASFIDVELTEDGFLAVTDNGRGIPIED 114 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPK+P KS LE+ILTTLHAGGKFD+ YE SGGLHGVG+SVVNALSD L V VAR ++ Sbjct: 115 HPKYPGKSALEVILTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDVLEVEVARGQMLY 174 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q +SRG+P P+++ +V N+RGTR+ F PD +IFG+ A F AR+ KM +SKAYL G Sbjct: 175 RQTYSRGLPQGPIQEVGRVLNRRGTRVRFHPDAQIFGEGARFKPARVFKMARSKAYLFGG 234 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 V+ WSCD + IPEK F FPGGLK YL +E +L+ ++F GKT + G H G Sbjct: 235 VEIRWSCDASLVAGSEIPEKAVFRFPGGLKDYLAADIEGHTLVHPDVFAGKTSRPGGH-G 293 Query: 301 TVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISII 358 + EWA+AW + + I+SYCNTI T EGGTHE+GLR L +G++ +AE T N KRA I Sbjct: 294 SAEWAVAWLGDADGAISSYCNTIPTAEGGTHEAGLRSVLLKGLRDHAERTGNTKRASIIT 353 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 +DD+M +LSVF+REPEF GQTK KL + +A R VE ALRDPFDH+L NP +A++L Sbjct: 354 TDDVMAGCAAMLSVFVREPEFQGQTKEKLATAEATRIVEAALRDPFDHWLGGNPTQASRL 413 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 L+WVIER++ERLRRR+++E++RKTA+RKLRLPGKLADCS N A G+ELFIVEGDSAGGSA Sbjct: 414 LDWVIERADERLRRRQEKEISRKTAVRKLRLPGKLADCSNNSAAGSELFIVEGDSAGGSA 473 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQAR R QAVLPLRGKILNVASAG +K+ NQQ+ DL+QALGC T + YREEDLRYE+V Sbjct: 474 KQARERQTQAVLPLRGKILNVASAGRDKLAQNQQLADLMQALGCGTGTHYREEDLRYERV 533 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHIASLL+TFF+++M LIE HLFL PPL+RI+QG K++YA DE H+ Sbjct: 534 IIMTDADVDGAHIASLLVTFFFRQMPKLIENGHLFLAVPPLYRISQGAKTLYARDEAHRD 593 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L++ + G+GK+EI RFKGLGEM+ +QLKET M RTLLRV I + + T D Sbjct: 594 ELLKK-EFSGRGKVEIGRFKGLGEMMPAQLKETTMSRKTRTLLRVSIEEAERAA--TADI 650 Query: 659 INKLMGTKADERFKFIQERASFIDD--VG 685 + +LMG K + RF FI ERA+F + + Sbjct: 651 VERLMGNKPESRFAFISERAAFASEELLD 679 >gi|55377342|ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049] gi|55230067|gb|AAV45486.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049] Length = 642 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 367/652 (56%), Gaps = 22/652 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SD Y A SI+ LEGLE V+ RP MYIG TD + LHHL EV+DNA+DE +AGY + I+V+ Sbjct: 5 SDEYGAKSIQTLEGLEAVQKRPAMYIGSTDARGLHHLVYEVVDNAIDEALAGYCDNIDVT 64 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V D+GRGIPV+ H + + +E+++T LHAGGKFDN +Y++SGGLHGVG+S Sbjct: 65 IHDDGSVSVSDDGRGIPVDTHEEH-GRPAVEVVMTILHAGGKFDNKSYQVSGGLHGVGVS 123 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGD 218 VVNALS L V V R ++ Q+F G P L+K K + GT + F PD +IF Sbjct: 124 VVNALSKWLEVEVRRDGALWKQRFDHGKPEYDLKKVRDLKPDEETGTTVRFWPDDEIFET 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + L + A+L+ V +++ E E F + GG++ +++ E Sbjct: 184 -GEFKFSTLSSRLRELAFLNSGVAISIDDERD-------GETETFAYDGGIREFVEYLNE 235 Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRV 336 + + +I + E++ VE A+ + I ++ N I T EGGTH +G + Sbjct: 236 TKDPLHRDIIYFEDEEEIAEGPVQVEIAMQGTDDLQGSIHAFANNINTREGGTHLTGFKT 295 Query: 337 ALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR I YA + + DD+ ++SV +P+F GQTKTKL + + + Sbjct: 296 SLTRVINDYATDNNLLKDLDDTLKGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRG 355 Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 VE+A+ D + +NP A ++ + V + ++ + RK+A+ LPGKL Sbjct: 356 IVESAMHDGLATFFEENPDTAEAIVGKAVEAAKARKAAQKAEELTRRKSALDSTALPGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC ELFI EGDSAGGSAKQ RN QA+LP++GKILNV ++I N +I Sbjct: 416 ADCQTRDPEEAELFIAEGDSAGGSAKQGRNPDFQAILPIKGKILNVEKHRLDRILENNEI 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 +L+ ALG ++ EDLRYEK+I+MTDADVDGAHI +LLLT FY+ M L+E +++ Sbjct: 476 RNLITALGTGIGDEFDIEDLRYEKIILMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVY 535 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI + A + + +I+EE K + RFKGLGEM QL ET M Sbjct: 536 ASQPPLYRIRYRGNTYDAMTDAERDQIIEE--KCDGNPTHVQRFKGLGEMNPEQLWETTM 593 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + R L ++ I N LMG + R +FI+E + + V Sbjct: 594 NPDNRILKQITIED----AAAADKMFNILMGDAVEPRKEFIKEHSPEAEWVD 641 >gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290] gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290] gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 647 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 252/657 (38%), Positives = 375/657 (57%), Gaps = 20/657 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + ++ YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 5 KETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEALAGF 64 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SGG Sbjct: 65 ATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVYTILHAGGKFGGGGYKVSGG 123 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212 LHGVG SVVNALS+EL V V R ++ FSRG +P++ + V + GT++ F PD Sbjct: 124 LHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVHFLPD 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF + FD L + A+L+ ++ + P +++F + GG++ Y Sbjct: 184 PDIFRETTTFDIKVLTARLRELAFLNKGLRIIVRDMR-----PEKPTEQDFLYEGGIRHY 238 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ +++ + E + G TVE AI + E+ ++ N I T EGGTHE Sbjct: 239 VEYLDKDKETLLKEPIYVEGMDNGI---TVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHE 295 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR I YA + ++ +D+ ++S+ +P+F GQTKTKL + Sbjct: 296 EGFKRALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 DA+ + D F +L++NP A K+++ + S+ R ++ RE RK+ + Sbjct: 356 SDARTVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISS 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + +ELFIVEGDSAGGSAKQ R R QA+LP+RGKILNV A ++I Sbjct: 416 LPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRIL 475 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + + Y K+IIMTDADVDGAHI +LLLT Y+ M LI+ Sbjct: 476 ANEEIRSLFTAMGTGFGDDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLID 535 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG Y ++ + L + K I R+KGLGEM A QL Sbjct: 536 AGYVYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPS--PKPVIQRYKGLGEMDAEQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T M+ R LLRV + + + + LMG K + R +FI++ A+F++++ Sbjct: 594 WDTTMNPENRHLLRV----ESSDAAEANHVFSMLMGDKVEPRREFIEDNATFVENLD 646 >gi|270307455|ref|YP_003329513.1| DNA gyrase, B subunit [Dehalococcoides sp. VS] gi|270153347|gb|ACZ61185.1| DNA gyrase, B subunit [Dehalococcoides sp. VS] Length = 642 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 257/659 (38%), Positives = 383/659 (58%), Gaps = 24/659 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D + S+NY AS I++LEGL VR RPGMYIG TD++ LHHL E++ N++DE + Sbjct: 3 DVNKAKPGANSENYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAM 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG + I+V + +G ++V DNGRGIPV+ HP S LE ++T LHAG KF TY++ Sbjct: 63 AGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHP-VTKISALETVMTVLHAGAKFGGKTYQV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG SVVNAL++ V V R I+ Q + RG P +PLE+ V + GT F+ Sbjct: 122 SGGLHGVGASVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSGTTTIFK 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D +IF +D L + AYL+ ++ ++ E+ +YF GG+ Sbjct: 181 ADSQIFSTT-EYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERT-------YYFEGGIT 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329 +++ NR + + + T +E AI + + + ++ N + T +GGT Sbjct: 233 GFVRHLNRNREVRHRQPIYITKKSDSTI---LEVAIQYNDGYSDSTLTFANCVNTIDGGT 289 Query: 330 HESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR YA ++ + +++ DD+ V I+SV + EP+F GQTK KL Sbjct: 290 HLTGFRSALTRAFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 +++ + VE+A+ + YL ++P + ++LE I ++ R RK R+ + RK+A+ Sbjct: 350 GNIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDT 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS+ A ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +K Sbjct: 410 GTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + +++I ++ AL + + LRY ++++MTDADVDG+HI +LLLTFF++ M L Sbjct: 470 MLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I + HLF+ PPL++I G+ + +++ K+ +L + K K++I R+KGLGEM A Sbjct: 530 ITESHLFIAQPPLYKIKIGSTEHWVYNDAEKETLLSQTKST---KVDIQRYKGLGEMSAE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T MD RTLL V++ N LMG + R FIQ + + ++ Sbjct: 587 QLWRTTMDPASRTLLEVKVED----AAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLD 641 >gi|257076794|ref|ZP_05571155.1| DNA gyrase subunit B [Ferroplasma acidarmanus fer1] Length = 677 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 261/669 (39%), Positives = 380/669 (56%), Gaps = 37/669 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + A DNYDAS I+ILEGL+ VR PGMYIG T LHH+ EV+DN +DE +AG+ Sbjct: 28 SNSMDKAMDNYDASQIQILEGLKAVRKVPGMYIGSTGPDGLHHMVYEVVDNCIDEAMAGF 87 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I + + +G ++V D+GRGIPV+ HPK+ + LEI++T LH+G KFD Y+++GG Sbjct: 88 GSDINIVIYKDGSISVEDDGRGIPVDIHPKY-KRPGLEIVMTELHSGAKFDKKVYKVTGG 146 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------ 201 LHGVG+ VVNALSD L V + I+ +KF +G+P+S L+ + Sbjct: 147 LHGVGVHVVNALSDYLVAVVKKGTKIYYEKFQQGVPVSGLQVLDAKNKSADPEIGDIEMK 206 Query: 202 --KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 + GT I F PD IF F + + A+L+ + S + + Sbjct: 207 YPEHGTIIKFYPDATIFDTI-DFSYPVISQRIMDLAFLNPNITIELSDLRS-------GK 258 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSY 318 E+F+F GGL Y+Q + + +++ E + E K VE+A+ + + S+ Sbjct: 259 HEKFHFDGGLVEYVQFLDQGKDIVNKEPIYCREEYK---EYVVEFALQYIDNVTGTEESF 315 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP 377 N I T EGGTH +G L+R + +YA+ + +S +I DD +L V + P Sbjct: 316 VNNIKTPEGGTHITGFHTGLSRAVLEYAKAKNLVKGVSGLIGDDTREGLTAVLHVKMFNP 375 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTK KL + + V + Y P A +++ V+ + R RK ++ Sbjct: 376 QFEGQTKEKLGNSVVKSIVSSITEKYLKDYFESYPPIADAIIKRVLAAAIAREASRKAKD 435 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 V RKTA+ LPGKLADCS + + TE++IVEGDSAGGSAKQARNR QA+LPLRGKI Sbjct: 436 LVRRKTALESGTLPGKLADCSSSDSDQTEVYIVEGDSAGGSAKQARNREYQAILPLRGKI 495 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV + K N++I +L+ A+G + ++ ++LRY K+IIMTDADVDGAHI +LLL Sbjct: 496 LNVEKSNDNKALENEEIKNLITAIGTNIKDKFEIKNLRYGKIIIMTDADVDGAHIRTLLL 555 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFFY+ M +LI+ H++ PPLFR+ +G VY E+ K + + + K+ + I R Sbjct: 556 TFFYRFMNELIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMGKN----VVIQR 611 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM QL ET M+ R L++V I L N LMG K + R KFI++ Sbjct: 612 FKGLGEMNPEQLWETTMNPESRKLVQVSIEDALY----ADQLFNILMGEKVEPRRKFIED 667 Query: 677 RASFIDDVG 685 A ++ ++ Sbjct: 668 NAKYVQNLD 676 >gi|169235747|ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium salinarum R1] gi|167726813|emb|CAP13599.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium salinarum R1] Length = 637 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 373/652 (57%), Gaps = 22/652 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S Y A I++LEGLE V+ RP MYIG TD + LHHL EV+DN++DE +AGY + I+ Sbjct: 2 SDQSEYSAGQIQVLEGLEAVQKRPAMYIGSTDARGLHHLVYEVVDNSIDEALAGYCDRID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G ++V D+GRGIPV H ++ ++ +E+ILT LHAGGKFD +Y++SGGLHGVG Sbjct: 62 VTLHDDGSVSVTDDGRGIPVATHEEY-DRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L V V+R + ++F RG P++ L+ + GT I FRPD +IF Sbjct: 121 VSVVNALSERLAVEVSRDGARYREQFERGEPVTDLQHVGD-SDDSGTLIRFRPDSEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D + L + A+L+ V+ + ++ P + F + GG++ +++ E Sbjct: 180 -TAYDFSTLENRLRELAFLNSGVEITLTDER-----GDEPTQSTFEYEGGIREFVEYLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVA 337 R+ + ++ + E G +VE A+ + ++ N I T EGGTH +G + A Sbjct: 234 TRNALHDDVIYFQGEDDGI---SVEIAMQASEDVQSSTHAFANNINTREGGTHLTGFKTA 290 Query: 338 LTRGIKKYAELTQN---KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + YA ++ DD+ ++SV +P+F GQTKTKL + + + Sbjct: 291 LTRTVNDYANDNNLLSELDGENLTGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE A+ D Y +NP A ++ +E ++ R +K E RK+A+ LPGKL Sbjct: 351 IVERAVNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC ELF+VEGDSAGGSAKQ RN QA+LPL GKILNV ++I + ++ Sbjct: 411 ADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGGKILNVEKHRLDRILEHDEL 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG ++ ++LRYE +I+MTDADVDGAHI +LLLTFFY+ M L+E +++ Sbjct: 471 RHIITALGTGIGDEFDIDELRYENIIMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI K+ A E +++I+EE ++ RFKGLGEM QL +T M Sbjct: 531 AAQPPLYRIRYRGKTYDAMTEADRERIVEEQCNGNPT--QVQRFKGLGEMNPQQLWDTTM 588 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L R+ + + LMG + R +FIQERA + V Sbjct: 589 DPENRILKRITVED----AAAADKMFSVLMGDAVEPRKQFIQERAGDAEWVD 636 >gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577] gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577] Length = 647 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 252/657 (38%), Positives = 375/657 (57%), Gaps = 20/657 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + ++ YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 5 KETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEALAGF 64 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SGG Sbjct: 65 ATKITVTVEKDNSITVTDDGRGIPVDIQKK-TGKPALETVYTILHAGGKFGGGGYKVSGG 123 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPD 212 LHGVG SVVNALS+EL V V R ++ FSRG +P++ + V + GT++ F PD Sbjct: 124 LHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVHFLPD 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF + FD L + A+L+ ++ + P +++F + GG++ Y Sbjct: 184 PDIFRETTTFDIKVLTARLRELAFLNKELRIIVRDMR-----PEKPTEQDFLYEGGIRHY 238 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ +++ + E + G TVE AI + E+ ++ N I T EGGTHE Sbjct: 239 VEYLDKDKETLLKEPIYVEGMDNGI---TVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHE 295 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G + ALTR I YA + ++ +D+ ++S+ +P+F GQTKTKL + Sbjct: 296 EGFKRALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 DA+ + D F +L++NP A K+++ + S+ R ++ RE RK+ + Sbjct: 356 SDARTVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISS 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + +ELFIVEGDSAGGSAKQ R R QA+LP+RGKILNV A ++I Sbjct: 416 LPGKLADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRIL 475 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + + Y K+IIMTDADVDGAHI +LLLT Y+ M LI+ Sbjct: 476 ANEEIRSLFTAMGTGFGDDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLID 535 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG Y ++ + L + K I R+KGLGEM A QL Sbjct: 536 AGYVYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPS--PKPVIQRYKGLGEMDAEQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T M+ R LLRV + + + + LMG K + R +FI++ A+F++++ Sbjct: 594 WDTTMNPENRHLLRV----ESSDAAEANHVFSMLMGDKVEPRREFIEDNATFVENLD 646 >gi|213964047|ref|ZP_03392290.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno] gi|213953329|gb|EEB64668.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno] Length = 658 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 258/661 (39%), Positives = 376/661 (56%), Gaps = 33/661 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AGY + I V+++ Sbjct: 14 DYSADNIQSLEGMEHVRMRPSMYIGDVGPRGLHHLVYEVLDNSIDEALAGYCDTISVTIN 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K S L++++T + AGGKFD +Y++SGGLHGVG+S V Sbjct: 74 EDNSITVEDNGRGIPVDIHKK-EGVSALQVVMTKIGAGGKFDKGSYKVSGGLHGVGVSCV 132 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD L TV R I+ Q++ RG+ L P+++ +KRGT++TF PD IF + Sbjct: 133 NALSDHLKATVYRDGKIWEQEYQRGVALYPVKQVGDT-DKRGTKVTFHPDELIFEQTTEY 191 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + AYL+ + + + EK E+FY GLK +++ NR Sbjct: 192 KYDTLAARIRELAYLNKGITITLTDLRNKDEKG-NFITEKFYSENGLKEFVKFLDGNRMP 250 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRG 341 I + + EK G VE A+ + + E Y N I T EGGTH G R+ LTR Sbjct: 251 IIGGVIAMEGEKNGIP---VEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLTRT 307 Query: 342 IKKYAELTQ--------NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +K YA+ + K + I DD ++SV + EP+F GQTKTKL + + Sbjct: 308 LKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNREVT 367 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V A+ + YL +NP +A ++E VI + R+ + V RK+ + LPGK Sbjct: 368 SAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLPGK 427 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS+ ELF+VEGDSAGG+AKQ RN+ NQA+LPLRGKILNV A K+ ++ + Sbjct: 428 LADCSEEDPTKCELFLVEGDSAGGTAKQGRNKDNQAILPLRGKILNVEKAMQHKVFDSDE 487 Query: 513 IMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I ++ ALG ++ + LRY KVIIM DADVDG+HI +L+LTFF++ M +LI Sbjct: 488 IKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRELI 547 Query: 568 EQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 E H+++ +PPL+ + + YA +++ + + E G + I R+KGLGEM Sbjct: 548 ENGHVYIATPPLYLVKSKSSKREEYAWNDKQRDALSAEM-----GNVTIQRYKGLGEMND 602 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ + + LMG + R +FI++ A + + Sbjct: 603 HQLWDTTMNPQHRTLRQVTIDNAT----EADRVFSMLMGDEVPPRREFIEKNAKYAK-ID 657 Query: 686 T 686 Sbjct: 658 A 658 >gi|111115263|ref|YP_709881.1| DNA gyrase, subunit B [Borrelia afzelii PKo] gi|110890537|gb|ABH01705.1| DNA gyrase, subunit B [Borrelia afzelii PKo] Length = 634 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EVIDN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVIDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V + R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESS-ITGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 YQSESYYIDGLMNDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLKIINLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M +LIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y +DE+ K+K L + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLNSIETKNRNSILLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|188588443|ref|YP_001919471.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43] gi|251778873|ref|ZP_04821793.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498724|gb|ACD51860.1| DNA gyrase, B subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083188|gb|EES49078.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 635 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 382/651 (58%), Gaps = 21/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 2 EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +T D+GRG+PV HPK S +E+I+T LHAGGKF Y++SGGLHGV Sbjct: 62 KVKINKDNSITSSDDGRGMPVGMHPKMHK-SAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS++ VTV R+ I+ Q++S+G L L++ GT I F+PD +IF Sbjct: 121 GASVVNALSEQCIVTVKREGHIWQQEYSKGKVLYDLKQIGDTEE-SGTTIYFKPDAEIFD 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L + + A+L+ + ++ E E +Y+ GG+K+++ Sbjct: 180 EV-EFDFDTLSQRLRELAFLNKGINITLIDCRDDRE-------ENYYYEGGIKSFVAYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 N++ + E + K TVE + + + E + N I T EGGTH G + Sbjct: 232 RNKTPLHPEPIYVEGIKDKV---TVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKT 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR YA+ + + DD+ ++SV I +P+F GQTKTKL + + + Sbjct: 289 ALTRAFNDYAKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKG 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + + +L +NP + +++ + + R RK RE+ RK+ + + LPGKLA Sbjct: 349 IVDSIVSEYIGIFLEENPGTSKIIIDKALMAARAREAARKARELTRKSVLERTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI N++ I Sbjct: 409 DCSSKDPRECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A G + E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+EQ H+++ Sbjct: 469 SMVTAFGGGIGKDFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLFR+ +G K YA+ + ++L++ ++I R+KGLGEM A+QL +T MD Sbjct: 529 AQPPLFRVGKGKKETYAYSDAELDQVLQDMGGKDNS-VDIQRYKGLGEMNATQLWDTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +KR LL+ EI + + LMG K + R +FI++ A + ++ Sbjct: 588 PSKRILLKAEIEDAM----AADEIFTILMGEKVEPRREFIEQNAKNVVNLD 634 >gi|304385859|ref|ZP_07368203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus acidilactici DSM 20284] gi|304328363|gb|EFL95585.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus acidilactici DSM 20284] Length = 648 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 253/661 (38%), Positives = 364/661 (55%), Gaps = 21/661 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE + Sbjct: 2 ADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+AN I+V ++ + +TV DNGRGIPV+ K K LE + T LHAGGKF Y++ Sbjct: 62 AGFANKIDVVVEKDNSITVSDNGRGIPVDIQKK-TGKPALETVYTVLHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208 SGGLHGVG SVVNALS EL V R I+ F +G +P++ + + GT + Sbjct: 121 SGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIVH 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF + FD L + A+L+ ++ + P +++F + GG Sbjct: 181 FVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMR-----PENPTEDDFLYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327 ++ Y++ + + +I E + KG TVE A+ + E ++ N I T EG Sbjct: 236 IRHYVEYLNKGKEVIFPEPIYVEGITKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + ALTR I YA+ + + DD+ ++SV +P+F GQTKT Sbjct: 293 GTHEEGFKRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444 KL + DA+ V + F +L++NP A ++++ + +R + +K+ + Sbjct: 353 KLGNSDARTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A Sbjct: 413 ELNNLPGKLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N++I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I+ ++++ PPL+++ QG Y +E + +L + K I R+KGLGEM Sbjct: 533 PMIDAGYVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET M+ R LLRV + + D LMG K + R KFI++ A F++++ Sbjct: 591 AEQLWETTMNPENRRLLRVSADDLDAANGD----FEMLMGDKVEPRRKFIEDNAVFVENL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|319440154|ref|ZP_07989310.1| DNA gyrase subunit B [Corynebacterium variabile DSM 44702] Length = 686 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 249/697 (35%), Positives = 367/697 (52%), Gaps = 51/697 (7%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 E + + S +Y A I ILEGLE VR RPGMYIG T E+ LHHL EV+DN++ Sbjct: 2 AEAEMNAGPESHHGSGDYGADQITILEGLEAVRKRPGMYIGSTSERGLHHLIWEVVDNSV 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A+ +EV+L +G + V DNGRGIPVE HP + T+++++T LHAGGKFD+ Sbjct: 62 DEAMAGFADHVEVTLKDDGSVQVSDNGRGIPVEMHP--TGRPTVQVVMTELHAGGKFDSQ 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y +SGGLHGVGISVVNALS + + R ++ Q F IP + K GT Sbjct: 120 AYAVSGGLHGVGISVVNALSTRVETEIRRDGYLWHQVFDHSIPEELEQV--KKARGSGTT 177 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------- 249 F DP+IF ++ + + Q A+L+ + + ++ Sbjct: 178 QRFWADPEIFET-TTYNFDTVSRRLQEMAFLNKGLTITLTDERRQVIEQVEDLEDAAADE 236 Query: 250 ------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 E + + F++P GLK Y+ ++++ + + + + Sbjct: 237 AAAPKTADEEAEEQKKDAPKVRTKVFHYPDGLKDYVDHLNKSKTPVHPTVIDLEVKGDDH 296 Query: 298 HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA + + Sbjct: 297 ---EVEIALQWNSGYSQSVHTFANTINTVEGGTHEEGFRAALTSLMNRYARDHKMLKDKE 353 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 ++ DD ++SV + +P+F GQTKTKL + + + V+ A + + NP E Sbjct: 354 PNLTGDDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQKATNEHVADWFDANPAE 413 Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A ++ + ++ R+ RK R+ V RK+A LPGKLADC +E++IVEGDS Sbjct: 414 AKAIVNKAVSSAQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDS 473 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ L Sbjct: 474 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKL 533 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAH 592 RY K+++M DADVDG HIA+LLLT Y+ M LIE+ H++L PPL+++ G + +A Sbjct: 534 RYHKIVLMADADVDGQHIATLLLTLLYRFMRPLIEEGHVYLAMPPLYKLKWGKGEPGFAF 593 Query: 593 DEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + L E G+ KI I R+KGLGEM A +L ET MD R L +V + Sbjct: 594 SDAERDAQLAEGLAAGR-KINKDDGIQRYKGLGEMNAKELWETTMDPQDRILKKVTLED- 651 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D ++ LMG R FI A + + Sbjct: 652 ---AADADETFAVLMGDDVVARRSFITRNAKDVRFLD 685 >gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555] gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016] gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555] gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016] Length = 637 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 251/653 (38%), Positives = 368/653 (56%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YD + I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + Sbjct: 2 PQEKKQTYDENQIQILEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V + + +TV DNGRG+PV H K K T+E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IDVVIHEDNSVTVADNGRGMPVGIHHKI-KKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ V V R+ ++ Q F RG + LE GT+I F+PD +IF Sbjct: 121 VGASVVNALSEICEVEVKREKHVWKQVFKRGKVATGLEIIGDSEEH-GTKIYFKPDKEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + + A+L+ + ++ E E F++ GG+K+++ Sbjct: 180 DEV-DFDYDMLSQRLRELAFLNKGIAITLKDERSGKE-------ELFHYEGGIKSFVTYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+ I E + K +VE A + I S+ N I T EGGTH +G + Sbjct: 232 NRNKQTIHKEPIYVEGIK---GDYSVEIAFQYNNGYSENIFSFANNIDTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR YA+ + ++ +D+ ++S+ + +P+F GQTKTKL + + + Sbjct: 289 SALTRVFNDYAKKFNILKENDKNLSGEDIREGITAVISIKLVDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+N + + +L +NP A +++ + S R RK RE RKT + LPGK Sbjct: 349 GIVDNIMAESLSDFLQENPQVAKTIIDKSLVASRAREAARKARELTRRKTVLENTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E+++VEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI ++ Sbjct: 409 LADCSSKDPSECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G + +RY K+IIMTDADVDGAHI +LLLTFFY+ M +L+E+ H+ Sbjct: 469 IRAMITAFGAGIGKDFDISKIRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ + K YA+ ++ +L E + I R+KGLGEM + QL +T Sbjct: 529 YIAQPPLYKVAKNKKDYYAYSDKELDILLNEIGGKN-SNVNIQRYKGLGEMDSEQLWDTT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTL++V + + + LMG K + R FI E A + ++ Sbjct: 588 MNPETRTLIQVNVEDTI----AADEIFTILMGDKVEPRKDFIIENAKKVVNLD 636 >gi|325336741|gb|ADZ13015.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Riemerella anatipestifer RA-GD] Length = 644 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 251/656 (38%), Positives = 383/656 (58%), Gaps = 22/656 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y ASSI+ LEG+E VR+RP MYIG + LHHL EV+DN++DE +AGY + I V Sbjct: 2 SNKQYTASSIQSLEGIEHVRLRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ ++V DNGRGIPV+ H K KS LE+++T + AGGKFD +Y++SGGLHGVG+ Sbjct: 62 TIHEGNAISVKDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS TV ++ I+ QK+S+G L +++ + RGT + F+PD IF + Sbjct: 121 SCVNALSTSTIATVYKEGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNEL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + A+L+ + + ++ EK E F GGLK +++ N Sbjct: 180 V-YNYDTLSARLRELAFLNKGINITITDERVKDEKG-EFLTETFLSEGGLKEFVEFIDGN 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 R I + + E+ VE A+ + E Y N I T EGGTH +G R AL Sbjct: 238 RESIMENVIFMEGERDDIP---VEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRAL 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +KKYA+ K + I DD ++SV + EP+F GQTKTKL + + V Sbjct: 295 TRTLKKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + ++L +NP EA ++++ V+ + ++ + V RK+ + LPGKL+D Sbjct: 355 DKIVGEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV + K+ N++I + Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKN 474 Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + ALG ++ + LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIEQ Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ SPPL+ + +G K VYA +E+ +++ E GKG +E+ R+KGLGEM QL E Sbjct: 535 YVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKG-VEVQRYKGLGEMNPEQLWE 593 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ R L +V I + + LMG + R +FI++ A + + Sbjct: 594 TTLNPENRILKQVNIENAG----EADRIFSMLMGDEVPPRREFIEKNAVYAK-IDA 644 >gi|270289888|ref|ZP_06196114.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4] gi|270281425|gb|EFA27257.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4] Length = 648 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 253/661 (38%), Positives = 364/661 (55%), Gaps = 21/661 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE + Sbjct: 2 ADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+AN I+V ++ + +TV DNGRGIPV+ K K LE + T LHAGGKF Y++ Sbjct: 62 AGFANKIDVVVEKDNSITVSDNGRGIPVDIQKK-TGKPALETVYTVLHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208 SGGLHGVG SVVNALS EL V R I+ F +G +P++ + + GT + Sbjct: 121 SGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIVH 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF + FD L + A+L+ ++ + P +++F + GG Sbjct: 181 FVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMR-----PEKPTEDDFLYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327 ++ Y++ + + +I E + KG TVE A+ + E ++ N I T EG Sbjct: 236 IRHYVEYLNKGKEVIFPEPIYVEGITKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + ALTR I YA+ + + DD+ ++SV +P+F GQTKT Sbjct: 293 GTHEEGFKRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444 KL + DA+ V + F +L++NP A ++++ + +R + +K+ + Sbjct: 353 KLGNSDARTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A Sbjct: 413 ELNNLPGKLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N++I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I+ ++++ PPL+++ QG Y +E + +L + K I R+KGLGEM Sbjct: 533 PMIDAGYVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET M+ R LLRV + + D LMG K + R KFI++ A F++++ Sbjct: 591 AEQLWETTMNPENRRLLRVSADDLDAANGD----FEMLMGDKVEPRRKFIEDNAVFVENL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|289705900|ref|ZP_06502279.1| DNA gyrase, B subunit [Micrococcus luteus SK58] gi|289557385|gb|EFD50697.1| DNA gyrase, B subunit [Micrococcus luteus SK58] Length = 720 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 259/723 (35%), Positives = 364/723 (50%), Gaps = 50/723 (6%) Query: 7 DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASD-----NYDASSIRILEGLEPVRMR 61 D P + ++ +PD+ D Y AS+I +LEGLE VR R Sbjct: 3 DAMPENPAEEPTAASAAPNPEAVPDAVGQPEAPVKDRKVPGEYGASAITVLEGLEAVRKR 62 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIG T + LHHL EV+DN++DE +AGYA I+V+L +G + V D+GRGIPV+ H Sbjct: 63 PGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYATGIDVTLQADGGVRVADDGRGIPVDLH 122 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 P + T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 123 P-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWR 181 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 F+ G K + + GT TF PDP+IF FD L Q A+L+ + Sbjct: 182 MSFADGGVPQGELVKGEAMDATGTVQTFYPDPEIFDS-IEFDYETLRARFQQMAFLNRGL 240 Query: 242 KTCWSCDK----------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273 + + ++ E AE+ + + GL Y+ Sbjct: 241 RITLTDERVQESNEVVDDEIAGEGAAGEDVAENGLAEEAEQEPQRRSVTYLYENGLLDYV 300 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Q + + E + G VE A+ W + +Y NTI T EGGT Sbjct: 301 QHLNSAKKVEYVHDDVIAFEAEDVSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGT 360 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G R ALT + +YA + + ++ +D+ ++SV + EP+F GQTKTKL Sbjct: 361 HEEGFRAALTSLVNRYAREKEILKPKEDNLTGEDIREGLTAVISVKLSEPQFEGQTKTKL 420 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + +A+ V A+ D + +NP A +++ I S RL RK R+ R+ + + Sbjct: 421 GNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKAIMASHARLAARKARDNARRKSPLES 480 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 +PGKLADCS E++IVEGDSAGGSAKQ RN QA+LPLRGKILNV A +K Sbjct: 481 FGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDK 540 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I ++ A G ++ LRY K+++M DADVDG HI +LLLT ++ M L Sbjct: 541 ALGNAEIQSMITAFGTNIGEEFDISKLRYHKIVLMADADVDGQHITTLLLTVLFRYMRPL 600 Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622 IE H+FL PPL+RI Y +E + +E G + + R+KGLGE Sbjct: 601 IEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDAAVEAGLAKGWRYPKDNGVQRYKGLGE 660 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M +L +T MD RTLL+V + + LMG + R FIQ+ A I Sbjct: 661 MNYQELWDTTMDPEHRTLLQVTMED----AAAADAVFSMLMGEDVESRRSFIQQNAKDIR 716 Query: 683 DVG 685 + Sbjct: 717 FLD 719 >gi|255264201|ref|ZP_05343543.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62] gi|255106536|gb|EET49210.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62] Length = 652 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 353/650 (54%), Positives = 458/650 (70%), Gaps = 10/650 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +ASD YDASSI +LEGLEPVR+RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A IE Sbjct: 9 AASDTYDASSIEVLEGLEPVRLRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHATRIE 68 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + +T+ DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF+ Y+ SGGLHGVG Sbjct: 69 VELHTDYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFNGKAYQTSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALSD + V VAR ++ Q+FSRGIP P++K N+RGT +TF D +IFG Sbjct: 129 ASVVNALSDIMIVQVARDRELYEQRFSRGIPQGPVKKIGAAPNRRGTTVTFHADEEIFGS 188 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RLLK +SKAYL V+ W K P + F+FPGGL YL+ L Sbjct: 189 -HRFKPSRLLKSIRSKAYLFSGVEIRW---KTAIVDGDTPMEATFHFPGGLADYLRETLG 244 Query: 279 NRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335 S + + F+G E +K G VEWAI W I SYCNT+ T EGGTHE+G Sbjct: 245 QASTYAEQPFSGIVEFQEKFNVPGKVEWAINWTPSREGFIQSYCNTVPTPEGGTHEAGFW 304 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+ +GI+ Y EL N++A SI +DL+ ++S FIREPEF GQTK +L + +AQR Sbjct: 305 AAILKGIRAYGELVSNRKASSITREDLVAGGCALVSCFIREPEFVGQTKDRLATTEAQRM 364 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VENA+RD FD++L + A +L+++I R+EERLRRR+++E RK+A +KLRLPGKL D Sbjct: 365 VENAVRDHFDNWLAADTKSAGAILDYLILRAEERLRRRQEKETARKSATKKLRLPGKLVD 424 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS N GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ +N +I D Sbjct: 425 CSSNTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNAEISD 484 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L QALG +++ +DLRY+KVIIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+L Sbjct: 485 LTQALGVGLGTKFNVDDLRYDKVIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLA 544 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFR+TQG K VY DE K++ +++ GKGKI++SRFKGLGEM A LK+T M+ Sbjct: 545 CPPLFRLTQGAKRVYCIDELEKERHMDK-GLGGKGKIDVSRFKGLGEMDAKDLKDTTMNP 603 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L+RV I++DL +T D + +LMG K + RF++IQE A F++++ Sbjct: 604 KTRKLIRVTIDEDL--PGETSDLVERLMGKKPEMRFQYIQENARFVEELD 651 >gi|257898812|ref|ZP_05678465.1| gram positive topoisomerase IV [Enterococcus faecium Com15] gi|257836724|gb|EEV61798.1| gram positive topoisomerase IV [Enterococcus faecium Com15] Length = 681 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 359/657 (54%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++ Y+ SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + Sbjct: 2 AKKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IDVTIHEDNSITVADSGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS L VT+ R + QKF G P L+K K R GT + F PD I Sbjct: 120 VGASVVNALSKWLTVTIVRDGIEYQQKFKNGGKPDGTLKKIGKTRKANGTIVHFLPDDTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L + + A+L VK S + KE F++ G+K ++ Sbjct: 180 FSTT-KFSYEILAERLRESAFLLKGVKISLSDLR-----GEESVKEVFHYEEGIKEFVDY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E + ++ + EK+G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 234 LNEEKDTLTPVV-YFSGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA +R ++ D +LS+ + E +F GQTK KL + Sbjct: 290 KAAMTKSYNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---L 447 A+ V+N + + YL +N + L+ I+ E R RK RE +R RK Sbjct: 350 VARTVVDNVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGES 409 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I Sbjct: 410 LLSGKLTPAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LI Sbjct: 470 LKNEEINTMIYTIGAGVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLI 529 Query: 568 EQKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++++G + + YA ++ ++++ K + R+KGLGEM Sbjct: 530 EAGKVYIALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET MD RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 586 NAEQLWETTMDPTSRTLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 638 >gi|309389293|gb|ADO77173.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228] Length = 638 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 377/648 (58%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A+ I++L+GLE VR RPGMYIG T K LHHL EV+DN++DE +AG + I+V++ Sbjct: 8 KDYNANQIQVLKGLEAVRKRPGMYIGSTGIKGLHHLVWEVVDNSIDEFLAGNGDQIKVTI 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +TV D GRGIP + H + ++++LTTLHAGGKF+NS+Y++SGGLHGVG+SV Sbjct: 68 HQGEEITVEDFGRGIPADTHQE-TGLPAVQVVLTTLHAGGKFNNSSYKVSGGLHGVGVSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS EL +T + + Q + +G P+ L+K K + GT I F+PD +IF + Sbjct: 127 VNALSSELEITTHWEGHKYQQHYKKGAPVDKLKKIGKT-ERSGTIIRFKPDSEIFTAR-E 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L Q AYL+ + ++ F + GG+K +++ ++R+ Sbjct: 185 FKFENLAHRLQESAYLNKELTLSLRDERGEEVVEKE-----FQYDGGIKAFVEFLNKDRN 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +I+++I +++ VE A+ + + I SY N I T +GG H +G + ALTR Sbjct: 240 IINNDIIYFESKPDD---YEVEIAVQYNDGYNERIFSYANNINTIDGGYHLTGFKTALTR 296 Query: 341 GIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +A+ + S+ D+ +++V + EP+F GQTKTKL + + + VE+ Sbjct: 297 AVNNFAKNNNKLPAKISSLNGKDVREGITAVINVKLPEPQFEGQTKTKLGNSEIRSIVES 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + Y NP A K+++ ++ R +K RE RKTA+ LPGKLADCS Sbjct: 357 EVYQYLSLYFDTNPDLAKKIIDKAVQAVRARKASKKARELTKRKTALSSNSLPGKLADCS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +ELFIVEGDSAGGSAKQ R R QA+LPL+GKILNV A +KI NN ++ ++ Sbjct: 417 SKKSEESELFIVEGDSAGGSAKQGRERKFQAILPLKGKILNVERARLDKILNNNEVAAII 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + E LRY K++IMTDADVDGAHIA+L+LT FY+ M +LIE H++L P Sbjct: 477 TALGAGIGEDFNLEKLRYHKIVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKP 536 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++T+ KS Y + ++ + +E + + R+KGLGEM QL T MD Sbjct: 537 PLYKVTKRKKSHYLYSDQALETFRKE---NENSSFSLQRYKGLGEMNPEQLWATTMDPQN 593 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L +VEI+ + + D +LMG+ A R +FI A + Sbjct: 594 RVLQKVEIDDKI----EADDIFTRLMGSNASLRKEFIFNNAELAQTID 637 >gi|62866002|gb|AAY17151.1| DNA gyrase B [Borrelia turicatae] Length = 634 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 243/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R F Q +SRGIP S +E V + RGT++TF D +IF + Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + E++ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 233 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I SE + + ++W + + I S+ N I T EGGTH +G + + Sbjct: 234 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + +V N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHNELLKVIVNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ H+++ PP Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + ++ LMG + R +FI++ A + ++ Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1] gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1] Length = 675 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 261/680 (38%), Positives = 374/680 (55%), Gaps = 47/680 (6%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y++ +I+IL GLEPVR RP MYIG TD + LHHL EV+DN++DE +AGY I+V Sbjct: 7 SNTYNSENIKILRGLEPVRERPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCTHIQVV 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V DNGRGIP++ NK+ LE +LT LHAGGKFD +TY++SGGLHGVG+S Sbjct: 67 IHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGVS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------------- 199 VVNALS EL TV + + FSRG P + LEKKE+ Sbjct: 127 VVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCPE 186 Query: 200 ----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 GT I F+PD KIF FD L + A+L+ + + ++ Sbjct: 187 TKEEFLNRYLSKISGTMIRFKPDSKIFET-IEFDYDILAHRLRELAFLNSGITISIADER 245 Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309 + E F + GG+ Y++ I + + K R V+ A + Sbjct: 246 ---CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFS-RKDEEARVEVDIAFQYA 301 Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISA 366 ++ +Y N++ T EGGTH G R ALT+ I K + + + + + DD+ Sbjct: 302 AAYSEKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGL 361 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 I+SV + P+F GQTK KL + + + V++ + Y ++P E +++ + Sbjct: 362 TAIISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAY 421 Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 + R RK +E+ R+ + + LPGKLADCS+ A +E++IVEGDSAGGSAKQ R+R Sbjct: 422 QAREAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRR 481 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LPLRGKILNV A KI N +I L+ A+G + E RY +IIMTDAD Sbjct: 482 FQAILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDAD 541 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 VDGAHI++LL+TFF++ + LIE +++L PPL+RI +G + YA+ EE ++IL+E Sbjct: 542 VDGAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMG 601 Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 + G + + R+KGLGEM ASQL T MD R L RV I + KLMG Sbjct: 602 EKG---VNVQRYKGLGEMNASQLWATTMDPETRVLKRVVIED----AAYANEIFEKLMGD 654 Query: 666 KADERFKFIQERASFIDDVG 685 R FI+ A + ++ Sbjct: 655 DVTARRDFIKRHAKEVTNLD 674 >gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides ATCC 33313] gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides ATCC 33313] Length = 648 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 373/653 (57%), Gaps = 22/653 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +D+YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+AN I Sbjct: 11 TQADDYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIVDNGIDEALAGFANHIT 70 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +TV+DNGRGIPV+ K K LE + T LHAGGKF Y++SGGLHGVG Sbjct: 71 VTIEKDNSITVIDNGRGIPVDIQVK-TGKPALETVFTILHAGGKFGGGGYKVSGGLHGVG 129 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216 SVVNALS L V V R F+ F RG + + + + RGT + F PDP IF Sbjct: 130 ASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVSRGTIVHFAPDPDIF 189 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L+ + A+L+ ++ + + P E F++ GG+K Y+ Sbjct: 190 RETTVFDYKTLMNRVRELAFLNKGLRISITDMR-----PEEPVVESFHYEGGIKEYVDFL 244 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 N+ +I +E + + VE ++ + ++ S+ N I T EGGTHE+G + Sbjct: 245 NVNKDVIFNEPIYVEGMENDI---DVEVSLQYTDDFHSNLLSFTNNIHTYEGGTHETGFK 301 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + DD+ I+SV +P+F GQTKTKL + DA+ Sbjct: 302 SALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSDAR 361 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ + F ++++NP A +++E I + R+ ++ RE +K+ + LPGK Sbjct: 362 TAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLPGK 421 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + +ELFIVEGDSAGGSAKQ R R QA+LP+RGKILNV A EKI N + Sbjct: 422 LADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILGNDE 481 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G + + +Y K+IIMTDADVDGAHI +LLLT Y+ M L+E ++ Sbjct: 482 IRSLFTAMGTGFGTDFDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYV 541 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y + + +L K I R+KGLGEM ASQL ET Sbjct: 542 YIAQPPLYQVRQGKFIKYLDADSELEALLPTLPAS--PKPIIQRYKGLGEMDASQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R LLRVE++ + + + LMG K + R KFI+E A + + + Sbjct: 600 MDPSVRRLLRVEMDDAI----EADMIFSMLMGDKVEPRRKFIEENAQYAE-LD 647 >gi|257065525|ref|YP_003151781.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548] gi|256797405|gb|ACV28060.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548] Length = 633 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 378/648 (58%), Gaps = 23/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYDA +IR+LEGLEPVR+RPGMYIG T EK LHHL EV+DN++DE +AG + I+V++ Sbjct: 4 NNYDAGNIRVLEGLEPVRLRPGMYIGSTSEKGLHHLVYEVVDNSVDEALAGRCDYIKVTV 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+G GIPV+ HP +KSTLE +LT LHAGGKFD+S Y+ SGGLHGVG+SV Sbjct: 64 TKDNVIKVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYQFSGGLHGVGVSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V R I+ F++G S LE ++ GT ITF+PD +IF Sbjct: 123 VNALSEYLIAEVKRDGHIYKMTFAKGEVTSDLEIIGDT-DETGTTITFKPDGEIFDTTI- 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L + A+L+ V+ +++ E F + GG+K ++ N++ Sbjct: 181 FDRKTLENRFREMAFLNKGVEIILEDERD-------DFSESFKYEGGIKEFVTYLNRNKT 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I ++ ++ VE + + + I +Y N I T EGGTH SG R ALTR Sbjct: 234 PIMEQVPHFDGMQEDI---EVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTR 290 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA + + ++ DD+ ++S+ I +P+F GQTK KL + + + V+ Sbjct: 291 TVNDYARNFKFLKENDENLQGDDIREGITAVVSIKISDPQFEGQTKAKLGNSEVRGAVDT 350 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + YL +NP A ++ + + R R+ + +++ + LPGKLADC Sbjct: 351 FVSQRLQAYLEENPKPAKNIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQ 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A ++I N+++I ++ Sbjct: 411 STDLSENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMI 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ M LI++ H+++ P Sbjct: 471 TAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQP 530 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL++I+ G Y + + + K+L+E +I+R+KGLGEM A QL +T MD + Sbjct: 531 PLYKISHGRNERYVYTDAERDKVLKELNVDN---YKINRYKGLGEMNADQLWDTTMDPDH 587 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV + T D+ + LMG K + R FIQE A ++ ++ Sbjct: 588 RVLLRVN---EDLDSTSTDDTFSLLMGEKVEPRRNFIQENAKYVSNID 632 >gi|29830864|ref|NP_825498.1| DNA gyrase subunit B [Streptomyces avermitilis MA-4680] gi|29607977|dbj|BAC72033.1| putative DNA gyrase subunit B [Streptomyces avermitilis MA-4680] Length = 692 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 261/703 (37%), Positives = 387/703 (55%), Gaps = 30/703 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D +P G+ E GE+ A +N + +YDAS+I +LEGL+ VR Sbjct: 1 MADSGNPN-ENIPSTDAGNGEANTSIGEV----AASNGEVTASYDASAITVLEGLDAVRK 55 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ I++++ +G + V+DNGRGIPV Sbjct: 56 RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADTIDITILADGGVRVIDNGRGIPVGI 115 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P K LE++LT LHAGGKF Y +SGGLHGVG+SVVNALS ++ V V + Sbjct: 116 VP-SEGKPALEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGFRW 174 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 +Q++ G+P +PL + E ++ GT +TF D IF + L + Q A+L+ Sbjct: 175 TQEYKMGVPTAPLSQNEAT-DETGTSVTFWADADIFET-TEYSFETLSRRFQEMAFLNKG 232 Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289 + + ++E A++ + +++ GG+ +++ + Sbjct: 233 LTIKLTDERESAKATAGADEAGADEKDEVKTVTYHYEGGIVDFVKYLNSRKGDAVHPTVI 292 Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 + ++E A+ W + S+ N I T EGGTHE G R ALT I KYA Sbjct: 293 DLEAEDRDKSLSLEVAMQWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARD 352 Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + ++ ++ DD+ I+SV + EP+F GQTKTKL + +A+ V+ A+ + + Sbjct: 353 KKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLND 412 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465 +L +NP EA ++ I+ + R+ RK R++ R+ + LPGKL+DC N E Sbjct: 413 WLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCE 472 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 +FIVEGDSAGGSAK RN QA+LP+RGKILNV A +KI NQ+I L+ A G Sbjct: 473 IFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVH 532 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + E LRY K+I+M DADVDG HI +LLLTF ++ M L+E H+FL PPL+++ G Sbjct: 533 EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKLKWG 592 Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 YA+ + + ++E ++ GK + I RFKGLGEM A +L+ T MD R L + Sbjct: 593 RDDFEYAYSDRERDALIELGRQAGKRVREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQ 652 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ D + LMG + R FIQ A + + Sbjct: 653 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 691 >gi|323343849|ref|ZP_08084076.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis ATCC 33269] gi|323095668|gb|EFZ38242.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis ATCC 33269] Length = 672 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 263/666 (39%), Positives = 388/666 (58%), Gaps = 30/666 (4%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY I Sbjct: 20 QNNENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTDI 79 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLHGV Sbjct: 80 EVTINEDESITVQDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGV 138 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALS + V R I+ Q++ +G PL P++ +KRGTR F PD IF Sbjct: 139 GVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKRGTRQQFWPDKTIFT 197 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + AYL+ +K + + E G P E F+ GLK +++ Sbjct: 198 TIH-YQWDIIARRMRELAYLNAGIKITLTDLRANEE--GKPRVEVFHAKDGLKEFVRYVD 254 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +R+ + ++ KTEK+G +E AI + + I SY N I T EGGTH SG R Sbjct: 255 RHRTHLFDDVIYLKTEKQGIP---IEVAIMYNTDYSENIHSYVNNINTIEGGTHLSGFRT 311 Query: 337 ALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL + Sbjct: 312 ALTRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 371 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + V+ A+ + +YL ++P EA K+ E V+ + R+ RK RE ++ + L Sbjct: 372 EVSGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKARESVQRKNFMSGGGL 431 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV ++ Sbjct: 432 PGKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFE 491 Query: 510 NQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY+ M Sbjct: 492 AESVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFM 551 Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF--KKHGKGKIEISRFKGL 620 +IE HL++ +PPL++ + + S Y + E+ +Q +++ I R+KGL Sbjct: 552 PKVIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGDEDAKSIHTQRYKGL 611 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET MD R L +V I + + + + LMG + R +FI++ A++ Sbjct: 612 GEMNPDQLWETTMDPKSRLLKQVNIE----NAAEADEIFSMLMGDDVEPRREFIEQNATY 667 Query: 681 IDDVGT 686 ++ Sbjct: 668 A-NIDA 672 >gi|269837196|ref|YP_003319424.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745] gi|269786459|gb|ACZ38602.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745] Length = 638 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 260/647 (40%), Positives = 385/647 (59%), Gaps = 23/647 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + I+V++ Sbjct: 9 YDASSIQVLEGLEAVRRRPGMYIGTTDIRGLHHLVYEIVDNSVDEALAGYCDRIDVTIHP 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TVVDNGRGIPV+ HPK KS LE+I+T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 69 DSAVTVVDNGRGIPVDVHPKL-GKSALEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 127 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS+ + V V + ++ Q++ RG P++P+E+ +V ++ GT+ TF+PD IF + Sbjct: 128 ALSEWVVVEVRKDGVLYRQRYERGRPVTPVEQVGEVGPDEHGTKTTFKPDATIFESLN-Y 186 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L++ + AYL+ ++ + ++ E FYF GG+ ++++ R + Sbjct: 187 NFDTLMQRFREIAYLTKGLQISFRDERTDRE-------MSFYFDGGIVSFVRHLNRRRQV 239 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + F+ E G +E A+ + + ++ N I T +GGTH +G + ALTR Sbjct: 240 LQPRPFSVSREVNGNL---IEVALQYNDGVAESTYTFANNINTIDGGTHLTGFKAALTRT 296 Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I YA + ++ +D+ I+SV + EP+F GQTK +L + + V++ Sbjct: 297 INDYARRAGFLKETDENLSGEDVREGLTAIVSVKLPEPQFEGQTKGRLGNAEVAGQVQSV 356 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + D YL +NP A ++++ + + R RK RE V RK A+ LPGKLADC + Sbjct: 357 VNDALATYLNENPQAARRIVDKCVTAARAREAARKARELVQRKGALDTFSLPGKLADCQE 416 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 EL+IVEGDSAGGSAKQ R+R QAVLPLRGKILNV A +++ N++I L+ Sbjct: 417 RDPARAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLQNEEIRALIT 476 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG Q+ LRY ++I+MTDADVDGAHI +LLLTFF++ + LI L++ PP Sbjct: 477 ALGTSIGDQFDPSKLRYHRIILMTDADVDGAHIRTLLLTFFFRHLESLIVDGRLYIAQPP 536 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+R+ G + Y + + + +I+ + EI R+KGLGEM QL ET MD R Sbjct: 537 LYRLQSGKEIHYVYSDAQRDEIIAAGGPN--KTWEIVRYKGLGEMNPEQLWETTMDPENR 594 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 TLL+V + + ++ + LMG+ R +FIQ A + ++ Sbjct: 595 TLLQVTLEDAVR----ADETFDMLMGSAVPPRRRFIQMHAREVQNLD 637 >gi|224532514|ref|ZP_03673139.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23] gi|224512586|gb|EEF82962.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23] gi|312149421|gb|ADQ29492.1| DNA gyrase, B subunit [Borrelia burgdorferi N40] Length = 634 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 243/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+G+P S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGVPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|310816655|ref|YP_003964619.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25] gi|308755390|gb|ADO43319.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25] Length = 654 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 334/654 (51%), Positives = 450/654 (68%), Gaps = 10/654 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y+A+SI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+A Sbjct: 7 AGSGAQGNEYNAASIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N IEV L + +TV DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF N Y SGGL Sbjct: 67 NRIEVELHEDYSVTVRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSNKAYSTSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 +GVG SVVNALSD + V VAR ++ Q FSRG+P P++K N++GT +TF PD + Sbjct: 127 NGVGSSVVNALSDLMRVEVARNRELYVQSFSRGVPQGPVQKVGAAPNRKGTSVTFHPDAE 186 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG ARL KM +SKAYL V+ W K + P + F FPGGL YL Sbjct: 187 IFGS-LKLKPARLFKMVRSKAYLFSGVEIRW---KTAIDDGETPAEATFKFPGGLADYLA 242 Query: 275 TKLENRSLISSEIFTGK--TEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHE 331 +++ + + F GK E+K G+VEWAI W + I SY NT+ T EGGTHE Sbjct: 243 DVMKDTQTYADKPFAGKVSFEEKFNVPGSVEWAINWSAMRDGFILSYTNTVPTPEGGTHE 302 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G A+ +G+K Y E N++A I +DL+ +LS+FIREP F GQTK +L + + Sbjct: 303 AGFWAAVLKGVKTYGERVNNRKAKDITREDLLTGGCALLSIFIREPSFVGQTKDRLSTEE 362 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + VE A+RD FD++L +P A ++L++++ R+EERLRRR+++E RK+A ++LRLPG Sbjct: 363 AAKWVELAVRDHFDNWLAADPKSAREILDFLVLRAEERLRRRQEKETQRKSATKRLRLPG 422 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS I TELF+VEGDSAGGSAK AR+R QA+LPLRGK+LNV A + K+ NQ Sbjct: 423 KLTDCSAKIRDNTELFLVEGDSAGGSAKGARSRETQAILPLRGKVLNVMGAAAGKLNQNQ 482 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ D+ +ALG + +++ EDLRY+++IIMTDADVDGAHIASLL+TFF+ +M LIE+ H Sbjct: 483 ELSDICEALGVQMGAKFNTEDLRYQRIIIMTDADVDGAHIASLLMTFFFTQMRPLIEKGH 542 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 LFL PPL+R+TQG +Y D+ K+ L++ G+GKI++ RFKGLGEM A LKET Sbjct: 543 LFLACPPLYRLTQGANRLYVADDAEKEYWLQK-GLGGRGKIDVQRFKGLGEMDAKDLKET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R L+RV IN D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 TMDPKTRKLIRVTINDDE--PGETSDLVERLMGKKPELRFQYIQENARFVEELD 653 >gi|206895598|ref|YP_002246982.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738215|gb|ACI17293.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265] Length = 637 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 243/657 (36%), Positives = 361/657 (54%), Gaps = 27/657 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + NY A I++L LE VR RP MYIG TD+ LHHL E++DNA+DE +AG+ Sbjct: 1 MEKSLKTKNYGAEQIKVLGDLEGVRKRPAMYIGSTDKNGLHHLIWEIVDNAIDEAMAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V L +G + V DNGRGIPVE HP+ + T+E++LT LHAGGKF Y+ SGGL Sbjct: 61 DHIKVVLYKDGSVLVEDNGRGIPVEIHPQ-EGRPTVEVVLTKLHAGGKFGGQAYKASGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPD 212 HGVG+SVVNALS+ L +TV R T++ Q++ G P++ +++ T + F+PD Sbjct: 120 HGVGLSVVNALSEWLEITVKRDGTVYWQRYEFGKPVTEVKEIGQYDDTESSATIVQFKPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF D FD + + + A+L+ V + E E F+F GL Sbjct: 180 KSIFAD-TRFDYEVIRQRLRELAFLNSEVTIELQREGS--------EPEFFHFESGLAGL 230 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 L+ + I + ++ VE A + + + I S+ N++ T +GGTH Sbjct: 231 LEEVANSSEKIIDVLRFSGAQQD----VQVEVAFTYVDDFDENIVSFVNSVRTVDGGTHV 286 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 GLR A+++ + + + ++ SDD +++V + EPEF GQTK KL S Sbjct: 287 QGLRSAISKTLAEVGRRKGLLKDNNVSSDDFRQGLRAVVAVRVPEPEFEGQTKGKLGSKY 346 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450 + VE+ + F+ YL L++ + +E R ++ R + + + LP Sbjct: 347 VRNIVEDVVSKAFESYLETQNDVTKTLIQRALASAEMRETFKRTREMMKNRLRVESTVLP 406 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+DCS EL IVEG+SAGGSAKQ R+R+ QAVLPLRGKILNV A +++ +N Sbjct: 407 GKLSDCSSRDVEKRELLIVEGESAGGSAKQGRDRTIQAVLPLRGKILNVEKASWKRVLDN 466 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L+ A+G + LRY K+IIMTDADVDGAHI +LLLTFF++ M L+E+ Sbjct: 467 EEIQALIAAIGTGVGEHFNFAKLRYGKIIIMTDADVDGAHIRTLLLTFFFRMMRPLVEEG 526 Query: 571 HLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H+++ PPL++I + +Y + +E Q L E + EI R+KGLGEM A QL Sbjct: 527 HIYIAQPPLYKIERKKSKDIIYLYSDEDLQAFLREHEGEN---FEIQRYKGLGEMNAEQL 583 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET ++ R L V + + + + LMG K R +FI A+ + ++ Sbjct: 584 WETTLNPETRNLYMVTVED----AEKADELFSVLMGEKVQPRKEFIFANANLVKNLD 636 >gi|300778803|ref|ZP_07088661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium gleum ATCC 35910] gi|300504313|gb|EFK35453.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium gleum ATCC 35910] Length = 644 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 251/656 (38%), Positives = 384/656 (58%), Gaps = 22/656 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y ASSI+ LEG+E VRMRP MYIG + LHHL EV+DN++DE +AGY + I V Sbjct: 2 SQKQYTASSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEALAGYCDTIFV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S+ + V DNGRGIPV+ H K KS LE+++T + AGGKFD +Y++SGGLHGVG+ Sbjct: 62 SIKEGNGIEVSDNGRGIPVDFHEK-EQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS+E+ TV R ++ Q +SRG + +E+ +RGT+ F+PD IF + Sbjct: 121 SCVNALSNEMITTVYRDGNVYQQIYSRGKAQTGVEEIGH-SERRGTKQFFQPDDTIFTEL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 ++ L + +YL+ + + ++E E E F+ GGLK ++ N Sbjct: 180 V-YNYDTLASRLRELSYLNKGITITLTDEREKLEDG-SFRSEVFHSEGGLKEFVAYIDGN 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVAL 338 R I + + E+ VE A+ + E Y N I T EGGTH +G R AL Sbjct: 238 RESIMEHVIFMEGERDDIP---VEVAMRYNTSFNENLHSYVNNINTHEGGTHLAGFRRAL 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +KKYA+ K + + DD ++SV + EP+F GQTKTKL + + V Sbjct: 295 TRTLKKYADDLGIPQKEKVEVTGDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVSGAV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + ++L +NP EA ++++ V+ + ++ + V RK+ + LPGKL+D Sbjct: 355 DKIVGEMLTNFLEENPNEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLSD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+F+VEGDSAGG+AKQ R+R QA+LPLRGKILNV + K+ +N++I + Sbjct: 415 CSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIRN 474 Query: 516 LVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + ALG ++ + LRY K++IMTDAD+DG+HI++L+LTFF++ M +LIE Sbjct: 475 IYTALGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIENG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+ + +G K VYA++E+ +++ E GKG +E+ R+KGLGEM QL E Sbjct: 535 YIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKG-VEVQRYKGLGEMNPEQLWE 593 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ R L +V I+ + + + LMG + R +FI++ A + + Sbjct: 594 TTLNPEHRILKQVTIDNAV----EADSIFSMLMGDEVPPRREFIEKNAKYAK-IDA 644 >gi|163733481|ref|ZP_02140924.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149] gi|161393269|gb|EDQ17595.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149] Length = 652 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 341/646 (52%), Positives = 440/646 (68%), Gaps = 10/646 (1%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A IEV L Sbjct: 13 DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHATRIEVELH 72 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +T+ DNGRGIPV+ HPKFP+KS LE+IL TLHAGGKF YE SGGLHGVG SVV Sbjct: 73 EDYAVTIRDNGRGIPVDPHPKFPDKSALEVILCTLHAGGKFSGKAYETSGGLHGVGASVV 132 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD + V VAR +F Q+FSRG+PL P+E+ +N+RGT +TF D +IFG F Sbjct: 133 NALSDSMIVQVARNKQLFEQRFSRGLPLGPVEELGPTQNRRGTTVTFHADAEIFGA-HRF 191 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ARL +SKAYL V+ W K P++ F+FPGGL YL+ L + Sbjct: 192 KPARLFNSIRSKAYLFSGVEIRW---KSAISDGETPQEATFHFPGGLSDYLRETLGAATT 248 Query: 283 ISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALT 339 + F G ++K G VEWAI W + I SYCNT+ T EGGTH +G A+ Sbjct: 249 YADNPFAGTVDFKEKFGEPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAGFWAAIL 308 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +GIK Y EL+ K+A I +DL ++S FI EP F GQTK +L + A + E A Sbjct: 309 KGIKAYGELSNTKKAAQITREDLTSGGCALVSCFIAEPAFVGQTKDRLSTEAAAKMTEGA 368 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DC+ Sbjct: 369 VRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTDCTSK 428 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 GTELFIVEGDSAGGS K AR+R QA+LPL+GKILNV A S K+ N +I DL +A Sbjct: 429 DRIGTELFIVEGDSAGGSGKGARDRKTQALLPLKGKILNVLGAASSKLGTNAEISDLCEA 488 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LGC +++ +DLRYEK+IIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+L PPL Sbjct: 489 LGCGMGTKFNLDDLRYEKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLYLACPPL 548 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FR+TQG K VY EE K LE+ GKGKI++SRFKGLGEM A LKET MD R Sbjct: 549 FRLTQGAKRVYCLTEEEKNDWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTMDPTTRK 607 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D+ +T D + +LMG K + RF++IQE A F++++ Sbjct: 608 LIRVSIDEDI--PGETGDLVERLMGKKPELRFQYIQENAKFVEELD 651 >gi|116491823|ref|YP_803558.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745] gi|116101973|gb|ABJ67116.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745] Length = 648 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 252/661 (38%), Positives = 362/661 (54%), Gaps = 21/661 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE + Sbjct: 2 ADEKETKAELAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A+ I+V ++ + +TV DNGRGIPV+ K K LE + T LHAGGKF Y++ Sbjct: 62 AGFADKIDVIVEKDNSITVTDNGRGIPVDIQKK-TGKPALETVFTVLHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRIT 208 SGGLHGVG SVVNALS EL V + I+ F+ G +P++ + GT + Sbjct: 121 SGGLHGVGASVVNALSTELDARVMKDGKIYYIDFALGKVKTPMKTIGDTEHPDDHGTIVH 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF + +D L + A+L+ ++ + P +++F + GG Sbjct: 181 FVPDPDIFQETTTYDINILKTRIRELAFLNKGLRITLKDMR-----PEKPTEDDFLYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEG 327 ++ Y++ E + +I E + KG TVE A+ + E ++ N I T EG Sbjct: 236 IRHYVEYLNEGKEVIFPEPIYVEGVTKGI---TVEVAMQYIEGYQSKLLTFTNNIHTYEG 292 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + ALTR I YA+ + + DD+ ++SV +P+F GQTKT Sbjct: 293 GTHEEGFKRALTRVINDYAKNNNILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAI 444 KL + DA+ V + F+ +L++NP A ++++ ++ +R + +K+ + Sbjct: 353 KLGNSDARTAVNEVFAETFNKFLLENPKVARQIVDKGILAAKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + +ELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A Sbjct: 413 ELNNLPGKLADNTSKDPSISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N++I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I+ +++ PPL+++ QG Y +E + +L + K I R+KGLGEM Sbjct: 533 PMIDAGFVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQLSPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET M+ R LLRV + D LMG K + R KFI+E A F+ ++ Sbjct: 591 AEQLWETTMNPENRRLLRVSAEDADAASGD----FEMLMGDKVEPRRKFIEENAVFVKNL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|2338752|gb|AAB67237.1| DNA gyrase subunit B [Borrelia burgdorferi] Length = 634 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|288958482|ref|YP_003448823.1| topoisomerase IV subunit B [Azospirillum sp. B510] gi|288910790|dbj|BAI72279.1| topoisomerase IV subunit B [Azospirillum sp. B510] Length = 662 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 355/659 (53%), Positives = 471/659 (71%), Gaps = 13/659 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 +D+Y A I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A+ Sbjct: 7 NTAPKADSYSAQDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAS 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I++ L +G + V DNGRGIP+++HPK+P KS LE+I+TTLH+GGKF N Y+ SGGLH Sbjct: 67 RIDLELAADGTVMVRDNGRGIPIDDHPKYPGKSALEVIMTTLHSGGKFSNKVYQTSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L V +AR+ + Q++SRG+P PL + V N+RGT I F DP+I Sbjct: 127 GVGLSVVNALSDRLTVEIAREKQLHVQEYSRGLPQGPLAHRGNV-NRRGTTIRFHADPEI 185 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQ 274 FG+ A F+ RL ++ +SKAYL V+ W+CD ++ P E +FPGGL+ YL Sbjct: 186 FGETAHFEPHRLYRLARSKAYLYRGVEIRWACDPSLLSVDATTPASETLHFPGGLQDYLN 245 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 L++R ++ F G + +G VEWA+AW +++ + YCNT+ T GGTHE+G Sbjct: 246 AALKDRKTLTPSPFAGALDFPN-GQGRVEWAVAWPDDDEGFSHTYCNTVPTPLGGTHEAG 304 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LR ALTRG+K Y ELT NKRA + +DD+M A +LSVFIREP F GQTK KLV+ +AQ Sbjct: 305 LRTALTRGLKAYGELTSNKRAGQVTADDVMGDACVLLSVFIREPHFQGQTKEKLVTAEAQ 364 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VE A++D FDH+L +P A LLE +IE++EER RR++ +E+ RK+A R+LRLPGKL Sbjct: 365 RLVETAVKDHFDHWLSGDPQSANGLLERLIEKAEERARRKQSKEMTRKSATRRLRLPGKL 424 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+N GTELF+VEGDSAGGSAKQAR R QA+LPLRGKILNVASA +K++ NQ++ Sbjct: 425 ADCSRNSPEGTELFLVEGDSAGGSAKQARQRETQAILPLRGKILNVASASVDKMKANQEL 484 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALGC + + LRYE+VIIMTDADVDGAHIASLL+TFFY+EM LI++ HL+ Sbjct: 485 NDLTQALGCGIGKDFSTDKLRYERVIIMTDADVDGAHIASLLMTFFYREMPGLIQEGHLY 544 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R++ G K VYA D+ HK ++L + K K +ISRFKGLGEM+ +QL++T M Sbjct: 545 LALPPLYRLSHGNKQVYARDDAHKDELLAKMFK--GKKPDISRFKGLGEMMPAQLRDTTM 602 Query: 634 DANKRTLLRVEINKDLNSLKD-----TQDSINKLMGTKADERFKFIQERASFI--DDVG 685 D +KR+LLRV + + + T+ + LMG + + RFKFIQ+ A F+ DD+ Sbjct: 603 DPSKRSLLRVVVPNAADPEEKPECERTRSLVEDLMGKRPELRFKFIQDNAKFVKADDID 661 >gi|319949427|ref|ZP_08023488.1| DNA gyrase subunit B [Dietzia cinnamea P4] gi|319436889|gb|EFV91948.1| DNA gyrase subunit B [Dietzia cinnamea P4] Length = 705 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 250/715 (34%), Positives = 376/715 (52%), Gaps = 73/715 (10%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D+ + A+ + Y ASSI +LEGLE VRMRPGMYIG T + LHHL EV+DN++DE + Sbjct: 3 DARSTADNGGAKEYGASSITVLEGLEAVRMRPGMYIGSTGPRGLHHLIWEVVDNSVDEAM 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A ++V+L +G + V+D+GRGIPVE H T+++++T LHAGGKFD+ +Y + Sbjct: 63 AGHATGVKVTLLEDGGVEVIDDGRGIPVEMHE--SGMPTVQVVMTQLHAGGKFDSDSYAV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVGISVVNALS + V + R ++ Q F +P ++ GT++ F Sbjct: 121 SGGLHGVGISVVNALSTRVEVQIKRDGRLWKQDFDMAVPAELVDA--GPAEGTGTKVRFW 178 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------- 257 DP IF +D + + Q A+L+ + + + AEK Sbjct: 179 ADPSIFETT-EYDFDIVARRLQEMAFLNKGLTITLTDRRPRAEKAAELDAIADSEGVGPD 237 Query: 258 --------------------------------------PEKEEFYFPGGLKTYLQTKLEN 279 K F++P GLK Y++ ++ Sbjct: 238 SAPGSDEGSDLASAVDAEQVFVEGAGDGAEAAEPEKIRERKRTFHYPDGLKDYVKAINKS 297 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I I + + G VE A+ W + ++ NTI T EGGTHE G R AL Sbjct: 298 KTAIHPTILYFEGKGTGH---EVEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAAL 354 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T + KYA + ++ ++ DD+ ++S I +P+F GQTKTKL + + + V Sbjct: 355 TSLVNKYARDKKLIKEKDPNLTGDDIREGLAAVISAKIADPQFEGQTKTKLGNTEVKGFV 414 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455 + + + H+ NP EA ++ I S+ R+ RK RE+ RK+A LPGKLAD Sbjct: 415 QRQVAEHVGHWFEANPAEAKVIVNKAIASSQARVAARKAREMVRRKSATDIGGLPGKLAD 474 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +EL+IVEGDSAGGSAK R+ QA+LPLRGKI+NV + +K+ N ++ Sbjct: 475 CRSKDPSKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKSRIDKVLKNAEVQA 534 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG ++ + LRY K+++M DADVDG HIA+LLLT ++ M L+E +++L Sbjct: 535 IITALGTGIHEEFDIDKLRYHKIVLMADADVDGQHIATLLLTLIFRFMKPLVENGYVYLA 594 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKE 630 PPL+++ + +A+ + + ++L + K KI I R+KGLGEM +L E Sbjct: 595 QPPLYKLKWSKGEPDFAYSDRERDELL-KIGLENKRKINVDDGIQRYKGLGEMNPKELWE 653 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + RTL +V + + + LMG D R FI A + + Sbjct: 654 TTMDPSVRTLRQVTLED----AAAADELFSILMGEDVDARRNFITRNARDVRFLD 704 >gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1087] Length = 649 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 258/658 (39%), Positives = 380/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++SRG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGIE-----QVKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|257437729|ref|ZP_05613484.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165] gi|257200036|gb|EEU98320.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165] Length = 664 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 243/671 (36%), Positives = 371/671 (55%), Gaps = 31/671 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + Y+AS I++L+GLE VR RPGMYIG T E+ LHHL E++DNA+DE +A Sbjct: 7 TSTNVETATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149 GY N IEV + N + V DNGRGIPV+ + ++ T LHAGGKF +NS Y+ Sbjct: 67 GYCNHIEVKILKNNIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 ++GGLHGVG SVVNA S+ L V V R + Q F RG P PL+ V GTR+T Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCLGTVAEGVTGTRVT 185 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------IAEKYGIPEK 260 F+PDP++F D ++ L K + +++L+ VK + ++E E Sbjct: 186 FKPDPEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGQEGDPCYRT 245 Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E + GG+K+++ E R ++ + K + + RG E A+ + + S Sbjct: 246 EVMCYEGGIKSFVTYLGEKRNLEVLHPNVIYLKGQTE---RGMAEIALQYNSSYNELLLS 302 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N + T +GGTHE G R +LTR Y + ++ D+ + ++SV ++ Sbjct: 303 FANNVNTPDGGTHEEGFRTSLTRVFNDYGRSHGLLKDKDENLSGSDVREGLICVISVKLQ 362 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434 E EF GQTK KL + + + V N + + +NP A + + ++ Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYTKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 + V RK+A+ R+PGKLADC + TE+FIVEGDSAGGSAK R+ + QA+LPL G Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 K+LNV A +++I N ++M +V ALGC ++ LRY+KV IM DADVDG+HI +L Sbjct: 483 KMLNVEKARADRIYGNDKLMPVVLALGCGIGEEFDISKLRYDKVFIMADADVDGSHICTL 542 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 +LTFF++ M LIEQ H+++ PPLF++ +G YA+++ + +E ++ Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMAILSQEMP-----GAKV 597 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 +R+KGLGEM QL ET M+ + R ++++ I + ++ LMG + + R +FI Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVQITIED----AEKADEAFTILMGDQVEPRRRFI 653 Query: 675 QERASFIDDVG 685 + A + + Sbjct: 654 ETNAQYAK-LD 663 >gi|86750095|ref|YP_486591.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2] gi|86573123|gb|ABD07680.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2] Length = 684 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 381/683 (55%), Positives = 495/683 (72%), Gaps = 9/683 (1%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L ++ + P + A A Y A+ I +LEGLEPVR RPGMYIG Sbjct: 5 LKASSKSKPASDLFGAAAKSGAPRAAAKPTGGAEAGYTAADIEVLEGLEPVRRRPGMYIG 64 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 GTDEKALHHLF+EVIDN+MDE +AG+A IEV L +G+LTV DNGRGIPV+ HPKFP K Sbjct: 65 GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELGADGYLTVSDNGRGIPVDPHPKFPKK 124 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S LE+I+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS L V VAR ++ F+RG Sbjct: 125 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSLLEVEVARGQQLYRMVFARG 184 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 IP LE K+ N+RGTR+ F+PD IFG KA F RL KM +SKAYL G V+ W C Sbjct: 185 IPQGKLESLGKINNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKC 244 Query: 248 DKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 D E+ + +P ++ F+FPGGLK YL + +L+ +IF+GK+ + G H G EWA+ Sbjct: 245 DPELLKGVEDVPPEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAH-GACEWAV 303 Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364 AW + + ++SYCNT+ T +GGTHESG+R AL RG+K +AE KRA SI S+D+M+ Sbjct: 304 AWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQGKRASSITSEDVMV 363 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 A +LSVF+REPEF GQTK +L + +AQ+ VE A++DPFDH+L NP++A KLL++V+E Sbjct: 364 GAAVMLSVFVREPEFQGQTKDRLATAEAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVVE 423 Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+EERLRRR+++E++RKTA++KLRLPGKLADC+ A G+ELFIVEGDSAGGSAKQAR+R Sbjct: 424 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDR 483 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QAVLPLRGKILNVASA +K+ N Q+ DL+QA+GC T YREEDLRY ++IIMTDA Sbjct: 484 KTQAVLPLRGKILNVASATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDA 543 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHIASLL+TFFY++M LI++ HL+L PPL+R+T G K+VYA D+ HK ++L++ Sbjct: 544 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKDELLKK- 602 Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664 + + K+++ RFKGLGEM+ +QLKET MD +RTLLRV + T DS+ +LMG Sbjct: 603 EFNANAKVDVGRFKGLGEMMPAQLKETTMDPARRTLLRVSLLDIDRDG--TADSVERLMG 660 Query: 665 TKADERFKFIQERASFIDD--VG 685 TKA+ RF FI ++A F + + Sbjct: 661 TKAEARFAFISDKAEFASEDLLD 683 >gi|195942016|ref|ZP_03087398.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi 80a] gi|216264581|ref|ZP_03436573.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a] gi|218249329|ref|YP_002374947.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7] gi|221218016|ref|ZP_03589482.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a] gi|223888682|ref|ZP_03623273.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b] gi|224533655|ref|ZP_03674244.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a] gi|225548740|ref|ZP_03769787.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a] gi|225549469|ref|ZP_03770435.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a] gi|226321066|ref|ZP_03796608.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805] gi|226321745|ref|ZP_03797271.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26] gi|215981054|gb|EEC21861.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a] gi|218164517|gb|ACK74578.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7] gi|221191964|gb|EEE18185.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a] gi|223885498|gb|EEF56597.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b] gi|224513328|gb|EEF83690.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a] gi|225369746|gb|EEG99193.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a] gi|225370770|gb|EEH00206.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a] gi|226232934|gb|EEH31687.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26] gi|226233476|gb|EEH32215.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805] gi|312148462|gb|ADQ31121.1| DNA gyrase, B subunit [Borrelia burgdorferi JD1] Length = 634 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|154249648|ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1] gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1] Length = 650 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 238/661 (36%), Positives = 375/661 (56%), Gaps = 23/661 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 + N + + +Y+A +I++L+GLEPVR RPGMYIG T + LHHL E++DN++DE Sbjct: 7 NPTTNVNNINEASDYNAQNIQVLKGLEPVRQRPGMYIGSTGKNGLHHLVYEIVDNSIDEA 66 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 + G+ + I+V++ +G + V DNGRGIPV+ HP+ S LE+++TTLHAGGKF S+Y+ Sbjct: 67 LQGFCDTIKVTIKSDGSVEVEDNGRGIPVDIHPE-TGTSALEVVMTTLHAGGKFSKSSYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG SVVNALS+ + V V R I+ Q+++RG+ + +E + RGT + F Sbjct: 126 VSGGLHGVGASVVNALSEWMEVEVHRDGKIYRQRYARGVKTTEVEVIGETNK-RGTIVRF 184 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF FD+ +L + A+L+ + + ++ ++ ++ GGL Sbjct: 185 KPDKLIFTT-TEFDSDTILTRLRDLAFLNPSITIEFVDERNDIKRT-------LHYAGGL 236 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 K ++ + + + +++ ++ E+ I S+ N I T +GGT Sbjct: 237 KEFIAHLNKGSKTLHEVVVIDGSQQDCEVHIAFQYTD---EDGETIVSFVNNIKTIDGGT 293 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSV-FIREPEFAGQTKTKLV 388 H +G + A TR + + + + +DL +++V + P+F GQTK+KL Sbjct: 294 HVTGFKTAFTRVVNELGKKKNLIKGEPFKGEDLREGMTAVVNVLMMGTPQFEGQTKSKLG 353 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + Q V +RD Y N +++ + E R ++ RE V RK+A+ Sbjct: 354 NEEIQDAVAKVVRDKLTDYFEVNETVLKIIIQKAQQAREAREAAKRAREAVKRKSALGAS 413 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC ELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV + K+ Sbjct: 414 TLPGKLADCITKNFEEAELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSELKL 473 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N+Q+ D++ A+G + LRY K++IMTDADVDGAHI +LLL FY+ M LI Sbjct: 474 LKNEQVKDIIMAIGGGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLLLALFYRYMRQLI 533 Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 E++ +++ PPL++++ G K +Y + +E +++ K + E+ R+KGLGEM Sbjct: 534 EEERIYIAMPPLYKLSISGEKPMYLYSDEELNEMIN-IAKQNNKRYEVQRYKGLGEMNPE 592 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DV 684 QL ET M+ R +++V+I ++ LMG +ER ++I A + D+ Sbjct: 593 QLWETTMNPKTRKIIKVKIED----AEEADSLFEILMGKDPEERREYIMRHARQLSLVDL 648 Query: 685 G 685 Sbjct: 649 D 649 >gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans ATCC 11563] gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans ATCC 11563] Length = 689 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 247/661 (37%), Positives = 386/661 (58%), Gaps = 21/661 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + + + +YDAS I++LEGLE VR RPGMYIG T LHHL E++DN++DE Sbjct: 45 SEEEKMAKKRELAKDYDASQIQVLEGLEAVRKRPGMYIGSTSASGLHHLVWEIVDNSIDE 104 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+A I+V+++ + +TVVD+GRGIPV+ + +E + T LHAGGKF Y Sbjct: 105 ALAGFAGHIQVTIEKDNSITVVDDGRGIPVDIQS-NTGRPAVETVFTVLHAGGKFGGGGY 163 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG SVVNALS+ LHV V + I+ Q+F +G +S +E+ + GT + Sbjct: 164 KVSGGLHGVGASVVNALSEWLHVYVHKNGRIYHQEFRQGAIVSDVEQTGDT-DTHGTVVH 222 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+PD +IF + F+ L + + A+L+ ++ + K +++ GG Sbjct: 223 FKPDAEIFTETTTFEFEVLNRRVRELAFLNKGLRISLMDARSENHKTAS-----YHYEGG 277 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 +K Y++ +++ ++ + + E+ G VE A+ + + I S+ N I T EG Sbjct: 278 IKEYIEYMNKDKDVLFEQPIYLEDEQDGI---EVEVALQYTDGFHSNILSFANNIHTFEG 334 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKT 385 G HESG + ALTR I YA + + ++ +D+ I+S+ +P+F GQTK Sbjct: 335 GMHESGAKTALTRVINNYARSQKLIKENEDNLTGEDVREGITLIVSIRHPDPQFEGQTKM 394 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAI 444 KL + + + +N F+ +L++NP A ++++ S+ RL ++ RE+ +K+ + Sbjct: 395 KLGNSEVRTITDNLFATHFETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGL 454 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 455 EISNLPGKLADCSSRNPEESELFIVEGNSAGGSAKQGRSRHFQAILPIRGKILNVEKASM 514 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++I +N++I L A+G ++ + RY K++IMTDADVDGAHI +LLLT Y+ M Sbjct: 515 DRILSNEEIRSLFTAMGTGWQNDFDITKARYHKLVIMTDADVDGAHIRALLLTLIYRYMR 574 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ ++++ PPL+++ QG K VY ++ ++ L+ K I R+KGLGEM Sbjct: 575 PILDAGYVYIAVPPLYQVRQGKKIVYLDTDKQLEEYLQTIPAT--PKPAIQRYKGLGEMD 632 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD RTLL+V ++ + + IN LMG + R FI+E A++ ++ Sbjct: 633 AEQLWETTMDPANRTLLQVNVDDAV----EADKIINMLMGDHVEPRRDFIEENATYA-NI 687 Query: 685 G 685 Sbjct: 688 D 688 >gi|225552337|ref|ZP_03773277.1| DNA gyrase, B subunit [Borrelia sp. SV1] gi|225371335|gb|EEH00765.1| DNA gyrase, B subunit [Borrelia sp. SV1] Length = 634 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GTR+TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEIVGESS-ITGTRVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDRRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 S+ + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSQPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNGISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|90424324|ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18] gi|90106338|gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18] Length = 685 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 375/650 (57%), Positives = 493/650 (75%), Gaps = 9/650 (1%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A IEV+ Sbjct: 39 EGDYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEVT 98 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLH+GGKFD+ YE SGGLHGVG+S Sbjct: 99 LAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGVS 158 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V VAR ++ F RG+P+ LE KV N+RGT I F+PDP+IFG KA Sbjct: 159 VVNALSCLLEVEVARSQQLYKMTFERGLPMGKLESLGKVHNRRGTTIRFKPDPQIFGPKA 218 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL KM +SKAYL G V+ W CD E+ + G+P ++ F+FPGGLK +L + N Sbjct: 219 AFKPQRLFKMARSKAYLFGGVEIRWHCDPELLKGLEGVPAEDTFHFPGGLKDFLGAAIHN 278 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVAL 338 +L+ +IF+G++ + G H G EWA+AW + + ++SYCNT+ T +GGTHE+G+R AL Sbjct: 279 DTLVHPDIFSGRSGRVGAH-GGCEWAVAWTADADGFLSSYCNTVPTPDGGTHEAGMRSAL 337 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 RG+K +AE KRA SI S+D+M+ A +LSVF+REPEF GQTK +L + +AQ+ VE Sbjct: 338 LRGLKDHAERAGQGKRASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKIVE 397 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 A++DPFDH+L NP++A KLLE+V+ER++ERLRRR+++E++RKTA++KLRLPGKLADC+ Sbjct: 398 QAIKDPFDHWLSGNPLQANKLLEFVLERADERLRRRQEKEISRKTAVKKLRLPGKLADCT 457 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 A G+ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNVASA +K+ N Q+ DL+ Sbjct: 458 NTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASATRDKLTANAQLSDLM 517 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 QA+GC + + YRE+DLRY ++IIMTDADVDGAHIASLL+TFFY++M LI++ HL+L P Sbjct: 518 QAIGCGSGANYREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAVP 577 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+T G K+VYA D+ HK+++L+ + + K+++ RFKGLGEM+ +QLKET MD K Sbjct: 578 PLYRLTHGAKTVYARDDAHKEQLLKS-EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAK 636 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685 RTLLRV + + T DS+ +LMGTKA+ RF FI E+A F + + Sbjct: 637 RTLLRVALADI--DREGTADSVERLMGTKAEARFAFISEKAEFASEDLLD 684 >gi|40063591|gb|AAR38380.1| DNA topoisomerase IV, B subunit [uncultured marine bacterium 582] Length = 652 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 350/652 (53%), Positives = 453/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y+ASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN Sbjct: 7 SSTQGSDYNASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + +T+ DNGRGIPV+ HPKF +KS LE+IL TLH+GGKF Y+ SGGLHG Sbjct: 67 IEVELHADYAVTIRDNGRGIPVDPHPKFKDKSALEVILCTLHSGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR +F Q+FSRGIPL P+ K N+RGT +TF D +IF Sbjct: 127 VGASVVNALSDSMVVEVARNKELFEQRFSRGIPLGPVAKTGTAANRRGTSVTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARLLKM +SKAYL V+ W K P++ F+FPGGL YL Sbjct: 187 GS-HRFKPARLLKMVRSKAYLFSGVEIRW---KSAVSDGDTPQEAVFHFPGGLADYLGET 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L + + + F G + +K + G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 243 LAGATTYAEKPFAGSIDFQEKFSVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +G++ Y EL+ NK+A I DDL+ ++S FI EPEF GQTK +L + +AQ Sbjct: 303 FWTAILKGMRAYGELSNNKKAAQITRDDLITGGCALVSCFISEPEFVGQTKDRLATTEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VENA+RD FD++L + A +L++++ R+EERLRRR+++E RKTA ++LRLPGKL Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKRLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELF+VEGDSAGGSAK ARNR QA+LPLRGKILNV A S KI NQ+I Sbjct: 423 VDCSATAREGTELFLVEGDSAGGSAKMARNRKVQALLPLRGKILNVLGAASAKIGTNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QA+G +++ +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+ Sbjct: 483 SDLSQAMGVNLGTRFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG K VY DE + + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRLTQGAKRVYCVDEIERDEWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + R L+RV I++D +T D + +LMG K + RF++IQE A F+ ++ Sbjct: 602 DPSSRKLIRVSIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVQELD 651 >gi|15594781|ref|NP_212570.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31] gi|3915725|sp|P33769|GYRB_BORBU RecName: Full=DNA gyrase subunit B gi|2688337|gb|AAC66802.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31] Length = 639 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 7 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 67 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 126 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 238 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 239 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 296 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 356 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 476 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 536 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 596 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 638 >gi|313886470|ref|ZP_07820186.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924016|gb|EFR34809.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 649 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 263/661 (39%), Positives = 375/661 (56%), Gaps = 21/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Y ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++DE +AGY Sbjct: 1 MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + V + + + V DNGRGIPV+ H K KS LE+++T LHAGGKFD +Y++SGGL Sbjct: 61 TEVLVEILSDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKGSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L V R I+ Q++SRG PL+ +E K + GTRITF+PD Sbjct: 120 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKADD-TGTRITFKPDDT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + + L + +YL+ + + E+ P+ FY GL +++ Sbjct: 179 IFRETI-YSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWIFYSENGLSEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + + ++ TEK+G VE A+ + + +Y N I T EGGTH +G Sbjct: 237 YVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R LTR +KKYA + K I DD I+SV + EP+F GQTKTKL + + Sbjct: 294 FRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSE 353 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 V+ A+ + + YL ++P EA +++ VI RR + V RK+ + LP Sbjct: 354 IVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLP 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS ELFIVEGDSAGG+AKQ R+ QA+LPLRGKILNV A +I +N Sbjct: 414 GKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDN 473 Query: 511 QQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I ++ ALG ++ + LRY K+IIMTDADVDGAHIA+L+LTFF++ M Sbjct: 474 AEIKNIYTALGVTVGTEDDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRP 533 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE ++++ +PPL+ + Y +E K + ++ + +I+I R+KGLGEM Sbjct: 534 LIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQENRIKIQRYKGLGEMND 593 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T M+ RTL +V I+ +L + LM + R +FI+E A++ ++ Sbjct: 594 VQLWDTTMNPQTRTLRQVTID----NLASADSVFSMLMSEDVEPRREFIEENATYA-NID 648 Query: 686 T 686 Sbjct: 649 A 649 >gi|145592574|ref|YP_001156871.1| DNA gyrase, B subunit [Salinispora tropica CNB-440] gi|145301911|gb|ABP52493.1| DNA gyrase subunit B [Salinispora tropica CNB-440] Length = 719 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 242/686 (35%), Positives = 369/686 (53%), Gaps = 21/686 (3%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIG 67 + + + + + D+ + +A D Y A SI +LEGLE VR RPGMYIG Sbjct: 44 ARPTSRPVRRTPRPVVPNGVADARKWPRVAAQDKQEYGAESITVLEGLEAVRKRPGMYIG 103 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T E+ LHHL EV+DNA+DE +AG+ + I+V L +G + V DNGRG PV+ HPK K Sbjct: 104 STGERGLHHLVWEVVDNAVDEALAGHCDTIDVVLLADGGVRVTDNGRGFPVDPHPKL-KK 162 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 +E+ LT LHAGGKFD Y +SGGLHGVG+SVVNALS + V + + ++ Q ++ Sbjct: 163 PGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSVVNALSTRMAVEIQKDGYVWRQSYTDS 222 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 P + + + G+ ++F PDP++F FD + + Q A+L+ + + Sbjct: 223 KPTPLEK--GESTDATGSAVSFWPDPRVFET-VAFDFQTIYRRLQEMAFLNRGLTIHFLD 279 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 ++ G + F + GG+ +++ +++ I + TE+ G +VE A+ Sbjct: 280 ERVDEGDDGKMREVTFCYQGGIADFVRHLNASKTSIHKSVVEFGTEEDG---MSVEIAMQ 336 Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMIS 365 W E + ++ N I T EGGTHE G R ALT I +Y + K + +D+ Sbjct: 337 WNESYGESVYTFANNINTHEGGTHEEGFRSALTSVINRYGAEKRLLKSDEKLSGEDIREG 396 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIE 424 I+SV + P+F GQTKTKL + + V+ + +L +NP EA ++ + Sbjct: 397 LAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCNEWLVDWLDRNPAEAKVIITKASQA 456 Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ ++ RK+ + +PGKLADC E+FIVEGDSAGGSAKQ R+ Sbjct: 457 ARARVAAQQARKLARRKSLLESGSMPGKLADCQSTDPRECEVFIVEGDSAGGSAKQGRDP 516 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A +++ N ++ L+ ALG + E LRY K+++M DA Sbjct: 517 RTQAILPIRGKILNVEKARIDRVLKNNEVQALITALGTGIHDDFDIEKLRYHKIVLMADA 576 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKI- 600 DVDG HI +LLLT ++ M L+E H++L +PPL++I +G + YA+ + + + Sbjct: 577 DVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPLYKIKWNRKGDDAQYAYSDRERDGLI 636 Query: 601 -LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L + KK +I RFKGLGEM +L ET M+ RTL +V ++ + Sbjct: 637 ALRQQKKPNAKPDDIQRFKGLGEMNYPELWETTMNPATRTLRQVTLDD----AATADELF 692 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 693 SVLMGEDVEARRSFIQRNAKDVRFLD 718 >gi|62865988|gb|AAY17144.1| DNA gyrase B [Borrelia turicatae] gi|62865990|gb|AAY17145.1| DNA gyrase B [Borrelia turicatae] gi|62865992|gb|AAY17146.1| DNA gyrase B [Borrelia turicatae] gi|62865994|gb|AAY17147.1| DNA gyrase B [Borrelia turicatae] gi|62865996|gb|AAY17148.1| DNA gyrase B [Borrelia turicatae] gi|62865998|gb|AAY17149.1| DNA gyrase B [Borrelia turicatae] gi|62866000|gb|AAY17150.1| DNA gyrase B [Borrelia turicatae] Length = 634 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R F Q +SRGIP S +E V + RGT++TF D +IF + Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + E++ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 233 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I SE + + ++W + + I S+ N I T EGGTH +G + + Sbjct: 234 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHNELLKVIGNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ H+++ PP Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + ++ LMG + R +FI++ A + ++ Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|119953224|ref|YP_945433.1| DNA gyrase subunit B [Borrelia turicatae 91E135] gi|119861995|gb|AAX17763.1| DNA gyrase subunit B [Borrelia turicatae 91E135] Length = 639 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 67 SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R F Q +SRGIP S +E V + RGT++TF D +IF + Sbjct: 126 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVG-VSSNRGTKVTFLADSEIFETL-EY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + E++ FYF GG+K ++ N Sbjct: 184 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKN 238 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I SE + + ++W + + I S+ N I T EGGTH +G + + Sbjct: 239 IQSEPYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 296 MSEAFKDSKISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 356 VHNELLKVIGNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ H+++ PP Sbjct: 476 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R Sbjct: 536 LYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + ++ LMG + R +FI++ A + ++ Sbjct: 596 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 638 >gi|315925615|ref|ZP_07921825.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter alactolyticus ATCC 23263] gi|315621156|gb|EFV01127.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter alactolyticus ATCC 23263] Length = 668 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 252/675 (37%), Positives = 378/675 (56%), Gaps = 22/675 (3%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 Q + +++ + + Y A I++LEGLE V+ RPGMYIG T + L Sbjct: 11 QQNPAPKRVDEIESDRGGIMSETTKTNHEYGADQIQVLEGLEAVKRRPGMYIGSTGSQGL 70 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134 HHL EV+DNA+DE +AGY + I VS+D + +TV+D+GRGIP + K K+ +E+ L Sbjct: 71 HHLVYEVVDNAIDEALAGYCDKIIVSVDKDNAVTVMDDGRGIPTGINHK-EGKTGVELAL 129 Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 T LHAGGKF Y++SGGLHGVG+SVVNALS+ L V V + ++ Q F G S L+ Sbjct: 130 TVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSEVLTVEVKQNKKVYRQTFEHGNKTSELD 189 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 N+ GT+I F+PDP+IF +D L + A+L+ V ++ E+ Sbjct: 190 VVG-TTNRTGTKIYFKPDPEIFDTTV-YDYDVLEHRLRELAFLNKGVAITLKDERPGQEQ 247 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313 G +++ GG+++Y++ N+ + +I + +E A + Sbjct: 248 TGE-----YHYAGGIRSYIEYMNRNKDPLYPQITYYEKAMD---EYALELAFQYTRGYQE 299 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILS 371 I SY N I T EGGTH +G + ALTR I YA + ++ DD+ ++S Sbjct: 300 NIYSYANNIYTPEGGTHLNGFKSALTRTINNYARKAGLLKQNDKNLSGDDVREGLTAVIS 359 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 + + EP+F GQTKTKL + + + VE + + ++L +NP A ++E I S R+ Sbjct: 360 IKLLEPQFEGQTKTKLGNPEVKGIVETIVNEELSNFLEENPNVAKAIVEKNISASHARMA 419 Query: 432 RRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 ++ RE+ RK+A+ LPGKLADC + +E+FIVEGDSAGGSAK R+ QA+L Sbjct: 420 AKRAREMTRRKSALDATSLPGKLADCREKDPAQSEIFIVEGDSAGGSAKVGRDSRIQAIL 479 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 PLRGKILNV A +++ + I ++ A G + E RY K++IMTDADVDGAH Sbjct: 480 PLRGKILNVEKARLDRMLTSDTIKGMITAFGTGIGEDFDIEKARYHKIVIMTDADVDGAH 539 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 I +LLLTFFY+ M LI+ ++++ PPL++++ G YA+D+ + LE+ + Sbjct: 540 IRTLLLTFFYRYMRGLIDHGYVYIAQPPLYKVSWGKHVEYAYDDADLNRRLED---KDRS 596 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 ++ + R+KGLGEM A QL ET M+ + RT+LRV I + LMG K R Sbjct: 597 RVTLQRYKGLGEMDAEQLWETTMNPDTRTMLRVGIEDATY----ADEIFTMLMGDKVQPR 652 Query: 671 FKFIQERASFIDDVG 685 +FI+ A + ++ Sbjct: 653 KEFIERNAKKVQNLD 667 >gi|227529858|ref|ZP_03959907.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350227|gb|EEJ40518.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 648 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 246/661 (37%), Positives = 375/661 (56%), Gaps = 20/661 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 D + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SDEQKETKAELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+ N I V ++ + ++V DNGRGIPV+ K K LE + T LHAGGKF Y+ Sbjct: 62 LAGFCNEINVIVEPDNSISVTDNGRGIPVDTQ-KETGKPALETVFTVLHAGGKFGGGGYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207 +SGGLHGVG SVVNALS EL V V+RQ + F G + ++ ++ + GT + Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVSRQGKRYYMDFDHGHVKTSMKVIDENVPEDIHGTTV 180 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PDP+IF + ++ L + A+L+ +K ++ + F++ G Sbjct: 181 HFKPDPEIFRETTTYNIKTLTNRLRELAFLNKGLKITIEDKRDKESERQE-----FHYEG 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 G++ Y+ E ++ + + ++ G TVE ++ + + ++ ++ N I T E Sbjct: 236 GIRHYVDFLNEGKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSDLLTFTNNIHTYE 292 Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTKT Sbjct: 293 GGTHETGFKMALTRVINDYGHKAGVLKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ + Sbjct: 353 KLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 EISNLPGKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N +I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 DRVLANDEIRSLFTALGTGFGEDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMK 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I ++++ PPL+++ QG Y +E +++ + K I R+KGLGEM Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVKYIESDEELDRVVNSLQPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD KR LLRV ++ K ++ LMG K R +FI++ A F++++ Sbjct: 591 AEQLWETTMDPEKRHLLRVNLDD----AKAAEEIFPMLMGNKVTPRREFIEKNAKFVENL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A] gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A] Length = 642 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 376/653 (57%), Gaps = 19/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +Y A I++LEGLEPVR RPGMYIG T K LHHL EV+DN++DE +AG+ IE Sbjct: 2 AIKSDYGAEQIQVLEGLEPVRKRPGMYIGTTGPKGLHHLVYEVVDNSIDEALAGHCTHIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V ++ +G +TV DNGRGIP + HP KS LE ++T LHAGGKF Y++SGGLHGVG Sbjct: 62 VDINIDGSVTVTDNGRGIPTDIHP-ATGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS+ L + V R N++++Q++ G+ +S L+K+ + +GT ++F PD +IF Sbjct: 121 ISVVNALSEWLIIKVWRDNSVYTQRYECGVAVSELKKEPDTEHPKGTSVSFLPDKQIFTS 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD A L + AYL+ ++ ++ ++ P E +++ GGL+ Y+ Sbjct: 181 DTNFDYATLSARLRELAYLNSQITIKFTDYRK-----QEPYSETYFYEGGLREYVTYMCR 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 N+ + +I EKKG + + + + N I T +GGTH GL+ L Sbjct: 236 NKEALHKDIIYICGEKKGV-QVEAALLWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVL 294 Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + A + ++ +++ GI+SV + EPEF GQTKTKL + + + V Sbjct: 295 TRTMNNVARKRNKIKENEPNLSGENVREGLTGIVSVKVPEPEFEGQTKTKLGNTEVRGIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + + + YL NP ++E ++ + R+ R+ V RK+ + LPGKLAD Sbjct: 355 DLLVGEVLGEYLEFNPHVGDIIIEKAVQAFKAAEAARRARDLVRRKSVLESSPLPGKLAD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+N+ KI N +I Sbjct: 415 CSTRDPAEAEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQS 474 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + + + LRY +++IMTDADVDGAHI +L+LTFFY+ LIEQ +++ Sbjct: 475 LITALGLGIKGEEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I +G Y ++E+ Q ++ + K I RFKGLGEM+ QL T M+ Sbjct: 535 ACPPLYKIERGRNHSYCYNEQQLQDNIKALPAN--AKYTIQRFKGLGEMMPVQLWNTTMN 592 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 R++ RVEI+ + + LMG K R +FI+ S ++D+ Sbjct: 593 PETRSMKRVEIDDAV----EADRIFTILMGDKVAPRRQFIENYGSKLNLNDLD 641 >gi|83952846|ref|ZP_00961576.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM] gi|83835981|gb|EAP75280.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM] Length = 652 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 350/652 (53%), Positives = 447/652 (68%), Gaps = 9/652 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 S +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A Sbjct: 7 TQMPDSGDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHAT 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV L NG ++V DNGRGIP HPK P+KS LEII TL+AGGKF +YE SGGLH Sbjct: 67 WIEVELHENGHVSVRDNGRGIPTGPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALSD L V VAR +F+ +FSRG+P LEK N+RGT +TF PDP+I Sbjct: 127 GVGSSVVNALSDHLRVEVARNKELFAMEFSRGVPQGKLEKIGAAPNRRGTAVTFHPDPEI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG RL KM +SKAYL V+ W K P + +F+FPGGL YL+ Sbjct: 187 FGS-LKLKPHRLFKMARSKAYLFSGVEIRW---KSAIPDGDTPMEAKFHFPGGLSDYLKE 242 Query: 276 KLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 + + + F G +K G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 243 AMGGATTYAEVPFAGTVSFEKFNAPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I +DL+ A ++S FIREPEF GQTK +L + +AQ Sbjct: 303 FWAAILKGIKAYGELVGNKKAGQITREDLVTGAGALVSCFIREPEFVGQTKDRLATTEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VEN++RD FD++L + A +L++++ R+EERLRRR+++E RKTA +KLRLPGKL Sbjct: 363 RMVENSVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS N+ GTELFIVEGDSAGGSAK ARNR NQA+LPLRGKILNV A S K+ N +I Sbjct: 423 VDCSTNVRDGTELFIVEGDSAGGSAKMARNRVNQALLPLRGKILNVLGAASSKLGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG +++ +DLRY+KVIIMTDADVDGAHIASLL+TFF+ +M +I+ HL+ Sbjct: 483 SDLTQALGVGLGTKFNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGAKRVYCLDEPERDSWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|224534805|ref|ZP_03675377.1| DNA gyrase, B subunit [Borrelia spielmanii A14S] gi|224514053|gb|EEF84375.1| DNA gyrase, B subunit [Borrelia spielmanii A14S] Length = 639 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 7 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 67 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V + R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 126 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGE-SVITGTKVTFLADSEIFETL-DY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ N Sbjct: 184 NFDVLEKRLKELAFLNDKIYISIEDRRFGKEKSSK-----FYFEGGIKSFVDYLTNNSKA 238 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 239 YQSESYYIDGFMNDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 296 MNEAFKNSKISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEVI 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 356 VYEHLLKIINLNPLEIDIILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M +LIE ++++ PP Sbjct: 476 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y +DE+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 536 LYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNSIFLQRYKGLGEMNPTQLWETTMDPARR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 596 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 638 >gi|326202777|ref|ZP_08192644.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782] gi|325986854|gb|EGD47683.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782] Length = 642 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 247/656 (37%), Positives = 379/656 (57%), Gaps = 20/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + +YD S I++LEGLE VR RPGMYIG T + LHHL E++ N++DE +AG Sbjct: 1 MNDFNNTSSYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVYEIVANSVDEALAGRC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V + + +TV DNG GIPV HPK TLE++ T LHAGGKF + Y +SGGL Sbjct: 61 DTIQVIVHKDNSITVTDNGSGIPVGIHPKM-GIPTLEVVHTILHAGGKFGSGAYSVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ + V V R+ I+ QK+SRG P++ +E + + GT TF+PDP Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPITSVEIIGETED-SGTITTFKPDPD 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF D FD ++ + A+L+ +K + ++ ++ GG+ ++++ Sbjct: 179 IFEDIV-FDFDVMITRYREMAFLNRGIKIQLIDQR-----PDEIIEKNLHYEGGIISFVE 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + + + ++ + + VE A+ + + + SY N I T EGGTH +G Sbjct: 233 YLNKTKEPLHDKVIYFEGIRDANI---VEVAMQYNDNYNETVFSYANNIATTEGGTHLTG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R A+T+ + YA + ++ +D+ ++SV + EP+F GQTKTKL + + Sbjct: 290 FRSAITKVLNDYARKFNIIRENDKNLSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 + VEN + D + +L +NP A +L+ + + R RK RK+A+ LP Sbjct: 350 IRTLVENVVSDKLNIFLEENPAIAKIILDKSLTAARARDAARKARELTRRKSAMDSSTLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS+ TE+FIVEGDSAGGSAKQ R+R QA+LPL GK+LNV + +K+ +N Sbjct: 410 GKLADCSEKDPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRLDKVFDN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG ++ LRY+K+IIM DADVDG+HI LLLTFF++ M L+EQ Sbjct: 470 EKLAPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPLF++ +G YA+D+ KI E+ + + I RFKGLGEM QL Sbjct: 530 HVYIAMPPLFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNIQRFKGLGEMNPDQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ RT+++V++ + + + MG K + R ++I A + + Sbjct: 590 ETTMNPETRTIMKVDVQDAIT----ADEVFSMFMGEKVEPRKEYIHLHAKDVTYLD 641 >gi|307693839|ref|ZP_07636076.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16] Length = 650 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 239/654 (36%), Positives = 361/654 (55%), Gaps = 19/654 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + Y S I++LEGLE VR RPGMYIG T E LHHL E++DN++DE +AGY Sbjct: 11 NSTQVEHEYGGSEIQVLEGLEAVRKRPGMYIGSTSESGLHHLVYEIVDNSIDEALAGYCT 70 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ +TV DNGRGIPV+ P+ + LE++ T LHAGGKF Y++SGGLH Sbjct: 71 DITVTINPGNTITVTDNGRGIPVDIQPQ-TGRPALEVVFTVLHAGGKFGGGGYKVSGGLH 129 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS+ L V V + I+ KFSRG ++ K + GT +TF+PDP++ Sbjct: 130 GVGASVVNALSEWLEVQVHKNGEIYEMKFSRGKITQEMKVVGKT-DHTGTTVTFKPDPEM 188 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ L + +A+L+ ++ + EK ++ + GG++ ++ Sbjct: 189 FDTL-EYNYETLHTRMREEAFLNAGLRIQTVDLRPGQEKE-----DDMCYEGGIREFVTF 242 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ I + ++ + E A+ + + + S+ N + T EGG HE G Sbjct: 243 INRNKTPIHDGVIYMSGAREDSM---AEIAMQYNDGYQEVMVSFANNVHTPEGGMHEEGF 299 Query: 335 RVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 R ALT + Y K + DD ++SV + E +F GQTK KL + + + Sbjct: 300 RRALTNTLNAYGRKIGVLKNDDKVSGDDCREGLTCVISVKLTEAQFEGQTKAKLGNAEIR 359 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGK 452 V + + + + +L +NP +LE + R+ + + RKTA+ +P K Sbjct: 360 TLVNSVVSEKLEIFLEENPKVGKLILEKAMMANRAREAARKARESIRRKTALGGAAMPDK 419 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC++ TEL+IVEGDSAGGSA Q R+ QA+LPL GK+LNV A ++K+ N + Sbjct: 420 LRDCNEANPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGNDK 479 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG + LRY KVIIM DADVDGAHI +LLLTFF++ M LI+ ++ Sbjct: 480 LTPVITALGAGIGDDFDLNKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIDNGYV 539 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T+G + A +E + KI E + K+ I+R+KGLGEM +L ET Sbjct: 540 YAAVPPLYKLTKGKTTRVAFSDEERDKISAELRGDNPNAKVIINRYKGLGEMDPHELWET 599 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KRTL R+E++ + + LMG K + R ++IQE A ++ Sbjct: 600 TMDPEKRTLKRIELDDAVR----ADEIFTLLMGEKVEPRREYIQENAKKAVNLD 649 >gi|329850536|ref|ZP_08265381.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19] gi|328840851|gb|EGF90422.1| DNA topoisomerase IV, B subunit [Asticcacaulis biprosthecum C19] Length = 699 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 351/689 (50%), Positives = 467/689 (67%), Gaps = 15/689 (2%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62 D ++ + + ++ + + + Y ASSI +LEGLEPVRMRP Sbjct: 19 DSQPVPETSSRAEKRQPAKPVASNPVKTPETPTPPPAPDSTYGASSIEVLEGLEPVRMRP 78 Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 GMYIGGTDEKALHHLF+EV+DNAMDE +A +A I V LD +G+++V D+GRGIPV+ HP Sbjct: 79 GMYIGGTDEKALHHLFAEVLDNAMDEAVANHAKAIWVELDADGYVSVRDDGRGIPVDPHP 138 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K+P KS LE+I+T LH+GGKF Y SGGLHGVG SVVNALS+ L VT R + Q Sbjct: 139 KYPGKSALEVIMTVLHSGGKFSGKAYATSGGLHGVGASVVNALSERLEVTAWRDGFEWQQ 198 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F+RG L P+E+ + + RGT++ F PD +IFG A F ARL +MT++KAYL V+ Sbjct: 199 NFARGHSLGPIEQIQPSKK-RGTKMRFLPDVEIFGSTAHFKPARLYRMTKAKAYLFRGVQ 257 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 W C P +++FYFP GL YL +++ ++IF+G+ E+K G V Sbjct: 258 IFWKCATSQI-TDQTPPEDKFYFPNGLADYLAERIKGTE-ALTDIFSGRVERKDDA-GAV 314 Query: 303 EWAIAW-----CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI 357 EWA+ W + + + SYCNTI T +GGTHE+GLR ALTR +K YAE+T +KR I Sbjct: 315 EWAVVWSGAGFDDHDSFVQSYCNTIPTPDGGTHEAGLRAALTRSLKTYAEMTGDKRGGLI 374 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 ++D+ A ++SVFIR PEF GQTK +L S DA R VE AL DPFDH+L +P +A K Sbjct: 375 TAEDVAAYAGIVISVFIRNPEFQGQTKDRLSSSDAARLVERALADPFDHWLTGSPKQAEK 434 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+++IER+EERL++RK +EV R +A RKLRLPGKLADCS+ A GTELFIVEGDSAGGS Sbjct: 435 LLQYIIERAEERLKKRKDKEVQRASATRKLRLPGKLADCSRQDAIGTELFIVEGDSAGGS 494 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQ RNR+ QA+LPLRGKILNVASA +K+R N ++ DL ALG + ++++EEDLRYE+ Sbjct: 495 AKQGRNRNTQAILPLRGKILNVASATVDKLRQNSELSDLGLALGVQPGAKFKEEDLRYER 554 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHIASLL+TFFY+ M ++ +L+L PPL+R++ G + YA D+ H+ Sbjct: 555 IIIMTDADVDGAHIASLLITFFYRTMPAMVRNGNLYLALPPLYRLSHGKEVHYAKDDSHR 614 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +IL + K K EI RFKGLGEM+ +QLKET MD RTL RV + + +D Sbjct: 615 AEILAKHFK--GKKPEIGRFKGLGEMMPAQLKETTMDPKTRTLARVTLPHEEED---IED 669 Query: 658 SINKLMGTKADERFKFIQERASF-IDDVG 685 + LMG K + R+++IQ+ A F +D+ Sbjct: 670 LVETLMGRKPELRYRYIQDHAEFAAEDLD 698 >gi|260433138|ref|ZP_05787109.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260416966|gb|EEX10225.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 652 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 353/652 (54%), Positives = 448/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ YDASSI +LEGLEPVR RPGMYIGGTDE+ALHH+ +E++DN+MDE +AG+AN Sbjct: 7 TPESATTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHEDYSLTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR ++ Q+FSRGIPL P+EK N+RGT +TF DP+IF Sbjct: 127 VGASVVNALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFHADPEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL K +SKAYL V+ W K + P + F+FPGGL YL+ Sbjct: 187 -GHHRFKPARLFKSIRSKAYLFSGVEIRW---KSAIDDGETPTEATFHFPGGLSDYLKET 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + S + + F G + +K G VEWAI W + I SYCNT+ T EGGTH +G Sbjct: 243 MNGSSTYADQPFAGTVDFNEKFGTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL NK+A I DDL+ ++S FIREPEF GQTK +L +++AQ Sbjct: 303 FWAAILKGIKAYGELINNKKAAQITRDDLITGGCALVSCFIREPEFVGQTKDRLATVEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VENA+RD FD++L + A +L+++I R+EERLRRR+++E RKTA +KLRLPGKL Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLILRAEERLRRRQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ N +I Sbjct: 423 VDCSATNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG S++ +DLRY+KVIIMTDADVDGAHIASLL+TFF+ +M +I+ HL+ Sbjct: 483 NDLTQALGVGLGSKFNLDDLRYDKVIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY DE + + GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGAKRVYCLDEAERDMW-LKKGLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPKSRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|289450191|ref|YP_003474441.1| DNA gyrase subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184738|gb|ADC91163.1| DNA gyrase, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 696 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 253/682 (37%), Positives = 376/682 (55%), Gaps = 23/682 (3%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 + P + E+ + + S + Y S I++LEGLE VR RPGMYIG Sbjct: 31 LADNPCALVEDFSEKNDFAELEKNQDEFDTSNNSKYSESDIQVLEGLEAVRKRPGMYIGD 90 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T + LHHL E++ N++DE +AG ++I ++++ +G +TV D+G GIP+ HP Sbjct: 91 TTLRGLHHLVYEIVANSVDEALAGRCDMIYLTINHDGSITVEDDGSGIPIGIHP-TKGIP 149 Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188 T+E++ T LHAGGKF Y +SGGLHGVG SVVNALS+ + V V R+ I+ F+RG+ Sbjct: 150 TVEVVHTILHAGGKFGGGAYSVSGGLHGVGASVVNALSEWMDVYVKREGNIYKISFARGV 209 Query: 189 PLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 PL+ N+ GT+ F PD +IF D F+ +L + A+L+ + + Sbjct: 210 VTEPLKIIGHCPINETGTKTVFMPDKEIFPDIH-FNYDNMLTRYREMAFLNKEITIVFRD 268 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 ++ E ++ GG+ ++++ ++ + + + + VE A+ Sbjct: 269 ERPEEEVVEK----VLHYDGGIISFVEYMNLHKEPLFPKPIYFASS---INNSYVEVALQ 321 Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMI 364 + I SY N I T EGGTH +G + A+T+ I YA + ++ +D Sbjct: 322 YNNTYAENIYSYANNIATPEGGTHLTGFKSAITKVINDYARKYGFLKTNDKNLQGEDCRE 381 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 I+SV + EP+F GQTK+KL + + + VE+ + D F +L +NP A ++E I Sbjct: 382 GLTCIVSVKLPEPQFEGQTKSKLGNSEMRTLVESMINDKFPVFLEENPAIAKIIMEKCIS 441 Query: 425 RSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 S R +K RE+ R+ + LPGKL DC +N E+FIVEGDSAGG+AK R Sbjct: 442 ASRARDAAKKAREMTRRKNTFDSVSLPGKLVDCQENDPTLCEIFIVEGDSAGGNAKGGRE 501 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 R QA+LPL GK+LNV + +K+ NN ++ +V ALG ++ LRY KVIIM D Sbjct: 502 RKYQAILPLWGKMLNVERSRVDKVYNNSKLSPIVMALGTGIGDEFDLNKLRYNKVIIMAD 561 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 ADVDGAHI +LLLTFF++ M L+E+ H+F+ PPLF++ + YA+DE +KI +E Sbjct: 562 ADVDGAHIRTLLLTFFFRHMKPLVEKGHVFIACPPLFKVENDNQVFYAYDEAGVEKIKQE 621 Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 G K ++ R+KGLGEM A QL ET M+ R LLRV DL + + N LM Sbjct: 622 ---QGWDKPKLQRYKGLGEMDAEQLWETTMNPATRKLLRV----DLEDAQSADQTFNLLM 674 Query: 664 GTKADERFKFIQERASF--IDD 683 G + R FIQ A + +D+ Sbjct: 675 GEEVKPRKDFIQANAKYALLDN 696 >gi|329114385|ref|ZP_08243147.1| DNA gyrase subunit B [Acetobacter pomorum DM001] gi|326696461|gb|EGE48140.1| DNA gyrase subunit B [Acetobacter pomorum DM001] Length = 679 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 359/685 (52%), Positives = 472/685 (68%), Gaps = 16/685 (2%) Query: 6 IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65 DLFS PP + S +G+ D+ ++ YDAS+I +LEGLEPVR RPGMY Sbjct: 2 SDLFSNTPPARKSS------TGKSRDAKPGTQADSAQAYDASAIEVLEGLEPVRRRPGMY 55 Query: 66 IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125 IGGTDE ALHHL +E++DNAMDE +AG+AN I+V LD LT+ DNGRGIPV+ HP+FP Sbjct: 56 IGGTDESALHHLAAEILDNAMDEAVAGHANTIDVRLDTENRLTIRDNGRGIPVDPHPRFP 115 Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185 ++S LE+ILTTLHAGGKF Y SGGLHGVG SVVNALS + V +AR T++ Q + Sbjct: 116 DRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSTRMEVEIARDRTVWKQVYE 175 Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 RG P++ LEK N+RGT+I+F+PDP+IFG F ARL ++ +SKA+L V W Sbjct: 176 RGKPVTKLEKVGAAPNRRGTQISFQPDPEIFGTHV-FVPARLYRLCRSKAFLFRGVTIRW 234 Query: 246 SCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----EKKGTHRG 300 SCD + + P + +FPGGL L +L ++ + + ++ G+ GT G Sbjct: 235 SCDPALIKTGDETPAEATLHFPGGLADSLTDELGPKAPLLTPLWAGEAPLPPAADGTDNG 294 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 VEWA+A+ E SYCNTI T +GGTHE+G R AL +G++ + + K+A +I + Sbjct: 295 KVEWAVAFLENGSASLVSYCNTIPTPQGGTHETGFRNALVKGLRAWGDQRSIKKASAITA 354 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D++ + G LSVFIR+P+F GQTK KL S A + VE ALRD FDH+L QNP +A LL Sbjct: 355 EDVLGMSAGRLSVFIRDPQFQGQTKEKLTSSTASKLVETALRDRFDHWLAQNPPQADTLL 414 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 + IER+EERLRR++Q+E RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAK Sbjct: 415 GFAIERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTKEFAPDTEIFLVEGDSAGGSAK 474 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR QAVLPLRGKILNVASA +EK+R NQ++ DL++ALGC + ++ LRY +VI Sbjct: 475 QARNRETQAVLPLRGKILNVASATAEKLRGNQELRDLIEALGCGSGDRFDLSKLRYGRVI 534 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ +LI HL+L PPL+R+TQG KSVYA D+ + + Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPELIRNGHLYLAQPPLYRLTQGAKSVYAMDDADRDR 594 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++ K +GKI++SRFKGLGEM LK+T MD +RTLLRV + T+ + Sbjct: 595 KMKTEFK-ARGKIDVSRFKGLGEMPPGDLKQTTMDPKRRTLLRVITPQ--EDRLATRQRV 651 Query: 660 NKLMGTKADERFKFIQERASFIDDV 684 LMG K + RF FIQE AS +DD+ Sbjct: 652 ESLMGRKPELRFAFIQEHASTVDDL 676 >gi|51598690|ref|YP_072878.1| DNA gyrase, subunit B [Borrelia garinii PBi] gi|51573261|gb|AAU07286.1| DNA gyrase, subunit B [Borrelia garinii PBi] Length = 634 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDRIDVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +LE I + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIISSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY KVIIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y +DE+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNNIFLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211] gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211] Length = 648 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 259/654 (39%), Positives = 383/654 (58%), Gaps = 24/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +++YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A Sbjct: 5 NKELQAEDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLH Sbjct: 65 HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F PDP+I Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD +L K Q A+L+ ++ + +E E + +++++ GG+ +Y+Q Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 EN+ +I E TVE A+ + + S+ N I T EGGTHE G Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGF 294 Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPG Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N H TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N+ Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E + Sbjct: 475 EIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534 Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PP++ + G++ Y EE Q LE + G+ K I R+KGLGEM Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGANQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|239916576|ref|YP_002956134.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] gi|281414960|ref|ZP_06246702.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] gi|239837783|gb|ACS29580.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] Length = 720 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 258/723 (35%), Positives = 363/723 (50%), Gaps = 50/723 (6%) Query: 7 DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASD-----NYDASSIRILEGLEPVRMR 61 D P + ++ +PD+ D Y AS+I +LEGLE VR R Sbjct: 3 DAMPENPAEEPTAASAAPNPEAVPDAVGQPEAPVKDRKVPGEYGASAITVLEGLEAVRKR 62 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIG T + LHHL EV+DN++DE +AGYA I+V+L +G + V D+GRGIPV+ H Sbjct: 63 PGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYATGIDVTLQADGGVRVADDGRGIPVDLH 122 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 P + T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 123 P-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSRRVDTEVRRQGHVWR 181 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 F+ G K + + GT TF PD +IF FD L Q A+L+ + Sbjct: 182 MSFADGGVPQGELVKGEATDATGTVQTFYPDAEIFDS-IEFDYETLRARFQQMAFLNKGL 240 Query: 242 KTCWSCDK----------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273 + + ++ E AE+ + + GL Y+ Sbjct: 241 RITLTDERVQESNEVVDDEIAGEGAAGEDVAENGLAEDAEQEPQRRSVTYLYENGLLDYV 300 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRG---TVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Q + + E + G VE A+ W + +Y NTI T EGGT Sbjct: 301 QHLNSAKKVEYVHDDVIAFEAEDFSDGRSMAVEVAMQWTSAYSESVHTYANTINTHEGGT 360 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G R ALT + +YA + + ++ +D+ ++SV + EP+F GQTKTKL Sbjct: 361 HEEGFRAALTSLVNRYAREKEILKPKEDNLSGEDIREGLTAVISVKLSEPQFEGQTKTKL 420 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + +A+ V A+ D + +NP A +++ I S RL RK R+ R+ + + Sbjct: 421 GNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKAIMASHARLAARKARDNARRKSPLES 480 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 +PGKLADCS E++IVEGDSAGGSAKQ RN QA+LPLRGKILNV A +K Sbjct: 481 FGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQGRNPETQAILPLRGKILNVERARLDK 540 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I ++ A G ++ LRY K+++M DADVDG HI +LLLT ++ M L Sbjct: 541 ALGNAEIQSMITAFGTNIGEEFDISKLRYHKIVLMADADVDGQHITTLLLTVLFRYMRPL 600 Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622 IE H+FL PPL+RI Y +E + +E G + + R+KGLGE Sbjct: 601 IEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDAAVEAGLAKGWRYPKDNGVQRYKGLGE 660 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M +L +T MD RTLL+V + + LMG + R FIQ+ A I Sbjct: 661 MNYQELWDTTMDPEHRTLLQVTMED----AAAADAVFSMLMGEDVESRRTFIQQNAKDIR 716 Query: 683 DVG 685 + Sbjct: 717 FLD 719 >gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396] gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus vestibularis ATCC 49124] gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396] gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus vestibularis ATCC 49124] Length = 650 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 258/651 (39%), Positives = 380/651 (58%), Gaps = 22/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q++ RG+ ++ L + GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETEKH-GTTVHFTPDPEIFQ 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLE-----QEKHYHYEGGITSYVKYIN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I E E G +VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + ++ ++ DD+ I+SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G S++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGSEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PP++ + G++ Y ++E K ++ E G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGANQEEKLRVALENYSVGRSKPTVQRYKGLGEMDDHQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG K + R +FI+E A + Sbjct: 599 ETTMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|293376332|ref|ZP_06622569.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909] gi|292645021|gb|EFF63094.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909] Length = 644 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 243/658 (36%), Positives = 364/658 (55%), Gaps = 38/658 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DEV+AGY + I+V++ Sbjct: 6 NYNEDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAIDEVLAGYGDHIKVTIH 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N ++V D+GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 ENNSISVQDSGRGVPTGMHK--SGKPTPEVIFTVLHAGGKFGTGGYKTSGGLHGVGASVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ + VT+ R ++ Q+F G P++ L+ K + GT ++F+PDP+IF Sbjct: 124 NALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSKE-TGTLVSFKPDPEIFSTTV- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + L + + A+L +K + E E FY+ G+K+++ E + Sbjct: 182 YSFDILSERLRESAFLLKGLKIELIDLRNDKE-------ETFYYEDGIKSFVSYLNEGKD 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ + E + V++A + I S+ N + T +GGTHE+G + LTR Sbjct: 235 TLH-DVVYFEGE---SQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTR 290 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 291 IFNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 +N + + + +N AT+L++ I+ ++ R RK RE R +K L GKL Sbjct: 351 DNVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RNR+ QA+LPLRGK++N A E I N++I Sbjct: 411 TPAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + + D+ Y+KVIIMTDAD DGAHI LLLTFF++ M +L+E ++ Sbjct: 471 NTMIYTIGAGVGANFELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530 Query: 574 LISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K YA +E ++ + K + R+KGLGEM A QL Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDEELGSVIAKVGK----GYMLQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 +T M+ RTL++V I D + LMG K + R ++I++ F DD Sbjct: 587 DTTMNPETRTLIQVSIED----AADADHRVTTLMGDKVEPRREWIEQNVDFTMEDDYD 640 >gi|259502126|ref|ZP_05745028.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri DSM 16041] gi|259169939|gb|EEW54434.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri DSM 16041] Length = 648 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 246/661 (37%), Positives = 375/661 (56%), Gaps = 20/661 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 D + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+ I V ++ + +TV DNGRGIPV+ + K LE + T LHAGGKF Y+ Sbjct: 62 LAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQ-TGKPALETVFTILHAGGKFGGGGYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRI 207 +SGGLHGVG SVVNALS EL V VARQ + F G + ++ + GT + Sbjct: 121 VSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTAMKVINDHLPEDVHGTTV 180 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F+PDP IF + ++ L + A+L+ +K ++ ++++F++ G Sbjct: 181 HFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDEDS-----QRQDFHYEG 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 G++ Y+ E+++ + + ++ G TVE ++ + + E+ ++ N I T E Sbjct: 236 GIRHYVDYLNEDKTTLFEPPIYVEGKENGI---TVEVSLQYTDSYRSELLTFTNNIHTYE 292 Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTKT Sbjct: 293 GGTHETGFKMALTRVINDYGHKANILKSNETLSGDDVREGMTAVVSIKHPDPQFEGQTKT 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ + Sbjct: 353 KLGNSDARTATDHVFAATFNRFLMEHPEEARQIIEKGQLASKARVAAKRAREVTRKKSGL 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 EISNLPGKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATL 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N++I L ALG + E Y K+IIMTDADVDGAHI +LLLT Y+ M Sbjct: 473 DRVLANEEIRSLFTALGTGFGEDFDIEKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMR 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +I ++++ PPL+++ QG Y +E ++++ + K I R+KGLGEM Sbjct: 533 PMITHGYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPS--PKPVIQRYKGLGEMD 590 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD R LLRV+++ + + LMGTK R FI++ A F++++ Sbjct: 591 AEQLWETTMDPENRHLLRVQLDD----AEQANEIFPMLMGTKVGPRRDFIEQNAKFVENL 646 Query: 685 G 685 Sbjct: 647 D 647 >gi|62865972|gb|AAY17139.1| DNA gyrase B [Borrelia parkeri] gi|62865974|gb|AAY17140.1| DNA gyrase B [Borrelia parkeri] gi|62865976|gb|AAY17141.1| DNA gyrase B [Borrelia parkeri] gi|62865978|gb|AAY17142.1| DNA gyrase B [Borrelia parkeri] gi|62865980|gb|AAY17143.1| DNA gyrase B [Borrelia parkeri] Length = 634 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 243/647 (37%), Positives = 366/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R F Q +SRGIP S +E V + RGT++TF D +IF + Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + E++ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKT 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I SE + + V + W E + S+ N I T EGGTH +G + + Sbjct: 234 IQSESYFIEGTCDDVI---VSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFKDSKVSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHNELLKVIGDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ H+++ PP Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + ++ LMG + R +FI++ A + ++ Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|27379466|ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium japonicum USDA 110] gi|27352618|dbj|BAC49620.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] Length = 681 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 385/685 (56%), Positives = 498/685 (72%), Gaps = 20/685 (2%) Query: 6 IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65 D F P+ + +++ ++G A +Y A+ I +LEGLEPVR RPGMY Sbjct: 11 DDFFGGNEPKPRAAAKASPRAGG-----------AEADYTAADIEVLEGLEPVRRRPGMY 59 Query: 66 IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125 IGGTDEKALHHLF+EVIDN+MDE +AG+A I V L +GFLTV DNGRGIP++ HPKFP Sbjct: 60 IGGTDEKALHHLFAEVIDNSMDEALAGHATFIGVELSADGFLTVTDNGRGIPIDPHPKFP 119 Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185 KS LE+I+ TLH+GGKFD+ YE SGGLHGVGISVVNALS L V VAR ++ F Sbjct: 120 KKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGISVVNALSSLLEVEVARSQKLYRMTFE 179 Query: 186 RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 RG P LE K+ N+RGTR+ F+PD IFG KA F RL KMT+SKAYL G V+ W Sbjct: 180 RGHPKGKLEDLGKINNRRGTRVRFKPDTDIFGAKAAFKPQRLFKMTRSKAYLFGGVEIRW 239 Query: 246 SCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304 +C E+ + +P + F+FPGGLK YL + +L+ +IF+GK+ + G H G EW Sbjct: 240 NCAPELLKGIDDVPAEATFHFPGGLKDYLAAAIHADTLVHPDIFSGKSGRNGAH-GACEW 298 Query: 305 AIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDL 362 A+AW + + ++SY NT+ T +GGTHESGLR AL RG+K +AE KRA SI S+D+ Sbjct: 299 AVAWTADADGFLSSYTNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKRASSITSEDV 358 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 M+ A +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L NP +A KLL++V Sbjct: 359 MVGAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAMKDPFDHWLSGNPNQANKLLDFV 418 Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 I+R+EERLRRR+++E RKTA +KLRLPGKLADCS G+ELFIVEGDSAGGSAKQAR Sbjct: 419 IDRAEERLRRRQEKETARKTAGKKLRLPGKLADCSDAGTEGSELFIVEGDSAGGSAKQAR 478 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 +R QAVLPLRGKILNVASAG +K+ N Q+ DLVQA+GC T +QYREEDLRY+++IIMT Sbjct: 479 DRKTQAVLPLRGKILNVASAGKDKLTANAQLSDLVQAIGCGTLAQYREEDLRYQRIIIMT 538 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDGAHIASLL+TFFY++M LI++ HLFL PPL+++T G+KSVYA D+ HK+ +++ Sbjct: 539 DADVDGAHIASLLITFFYRQMPRLIDEGHLFLAVPPLYKLTHGSKSVYARDDAHKEALIK 598 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 + + K+E++RFKGLGEM+ +QLKET MD KRT+L+V + D T DS+ +L Sbjct: 599 S-EFNANAKVEVNRFKGLGEMMPAQLKETTMDPAKRTMLKVVLLADDRDT--TADSVERL 655 Query: 663 MGTKADERFKFIQERASFIDD--VG 685 MGTKA+ RF FI ++A F ++ + Sbjct: 656 MGTKAEARFAFISDKAEFANEDLLD 680 >gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1] gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1] Length = 635 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 261/650 (40%), Positives = 376/650 (57%), Gaps = 21/650 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A NY A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AG+AN I + Sbjct: 2 AEQNYGAESIKVLKGLEAVRKRPGMYIGSTSKAGLHHLVWEIMDNSVDEAMAGFANKIIL 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ G + V DNGRGIPV KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG Sbjct: 62 TITKEGEIIVQDNGRGIPVGIQA-DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS + V V R+ I Q FS G + N+ GT + F+PDP+IF + Sbjct: 121 SVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGETNETGTIVRFKPDPEIFLEG 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + +YL+ + + + I + E++FP G+ Y++ K E Sbjct: 181 TEFDYETIRNKVKQLSYLNKGLVIELNDLR-------IDKHVEYHFPNGILDYVKEKNET 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVAL 338 + I+ IF + VE A+ + E E ++ N I T EGGTHE GLR +L Sbjct: 234 KVKINPSIFYVDDKHDDI---EVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSL 290 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 R I +YAE T NK A DD+ V I+S+ +P++ GQTKTKL + DA++ V Sbjct: 291 VRVINRYAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455 + + D F+ +L+++P +A +++ + R+ ++ RE RK+A+ LPGKLAD Sbjct: 351 DAVVGDAFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + N +I Sbjct: 411 CESKDPEIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKS 470 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 +V A+G + LRY K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 IVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I G K YA+ + +++ + + I R+KGLGEM QL ET MD Sbjct: 531 QPPLYKIEAGKKVAYAYSDVELEEL--KAGDFKDSRFTIQRYKGLGEMDPIQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L++++ + + LMG + R +IQE A F++++ Sbjct: 589 EKRTMLQIKLED----AAIANEVFSDLMGEDPELRRNYIQENAEFVENID 634 >gi|62865970|gb|AAY17138.1| DNA gyrase B [Borrelia parkeri] Length = 634 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 242/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R F Q +SRGIP S +E V + RGT++TF D +IF + Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVG-VSSNRGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + E++ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRLGKERFLE-----FYFEGGIKAFVDFITNNSKT 233 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I SE + + ++W + + I S+ N I T EGGTH +G + + Sbjct: 234 IQSESYFIEGTYDDVIVSVGLKWTEGYSDN---ILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFKDSKVSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHNELLKVIGDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPVEREIYIVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ H+++ PP Sbjct: 471 SLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + ++ LMG + R +FI++ A + ++ Sbjct: 591 KMKLIEIDDAI----QAENIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|228470217|ref|ZP_04055124.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3] gi|228308168|gb|EEK17031.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3] Length = 657 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 262/669 (39%), Positives = 377/669 (56%), Gaps = 21/669 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + Y ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++ Sbjct: 1 MSEQEKDIKTAPQDKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AGY + V + + + V DNGRGIPV+ H K KS LE+++T LHAGGKFD Sbjct: 61 DEALAGYCTEVLVEILPDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKG 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 +Y++SGGLHGVG+S VNALS+ L V R I+ QK+SRG PL+ +E + + GTR Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQKYSRGKPLTGVEVVGEASD-TGTR 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF+PD IF + + + L + +YL+ + + E+ P+ FY Sbjct: 179 ITFKPDDTIFRETI-YSSDTLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWTFYSE 236 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GL +++ + + ++ TEK+G VE A+ + + +Y N I T Sbjct: 237 DGLSEFVRYVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTI 293 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R LTR +KKYA + K I DD I+SV + EP+F GQT Sbjct: 294 EGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQT 353 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKT 442 KTKL + + V+ A+ + + YL ++P+EA +++ VI RR + V RK+ Sbjct: 354 KTKLGNSEIVSVVDAAVSEALEIYLEEHPLEAKLIVDKVILAAQARHAARRARELVQRKS 413 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS ELFIVEGDSAGG+AKQ R+ QA+LPLRGKILNV A Sbjct: 414 PLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKA 473 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLT 557 +I +N +I ++ ALG ++ + LRY K+IIMTDADVDGAHIA+L+LT Sbjct: 474 MQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILT 533 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ M LIE ++++ +PPL+ + Y ++ K + ++ + +I+I R+ Sbjct: 534 FFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDDEKANFVTKYGNGQENRIKIQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL +T M+ RTL +V I+ +L + LM + R +FI+E Sbjct: 594 KGLGEMNDIQLWDTTMNPQTRTLRKVTID----NLASADSVFSMLMSEDVEPRREFIEEN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|114798323|ref|YP_759701.1| DNA topoisomerase IV subunit B [Hyphomonas neptunium ATCC 15444] gi|114738497|gb|ABI76622.1| DNA topoisomerase IV, B subunit [Hyphomonas neptunium ATCC 15444] Length = 665 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 356/654 (54%), Positives = 461/654 (70%), Gaps = 10/654 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y A I +LEGLEPVR RPGMYIGGTDE+A HHLF+EV+DNAMDE +AGYAN I+ Sbjct: 14 AGTAGYSAKDIEVLEGLEPVRKRPGMYIGGTDERAWHHLFAEVLDNAMDEAVAGYANRID 73 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + LD +GFLTVVDNGRGIP++ HPKFP KS LE+I+TTLH+GGKF + Y +GGLHGVG Sbjct: 74 IKLDADGFLTVVDNGRGIPIDPHPKFPKKSALEVIMTTLHSGGKFSDKAYSTAGGLHGVG 133 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS+ + V VAR T++ Q FSRG+PL L+K N+RGT + F+PD +IFGD Sbjct: 134 ISVVNALSELVEVEVARDRTLYRQDFSRGLPLGKLQKVGAAPNRRGTSVRFKPDFQIFGD 193 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKL 277 K + RL +M +SKAYL V+ WSCD E + E +P + +P GL L Sbjct: 194 KLRWRPQRLFQMARSKAYLFRGVEVRWSCDPELLPEDSKVPAEAVLSYPNGLADQLTEVF 253 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHES 332 ++S I+ FTG G VEWAIAW E + SYCNTI T EGGTHE+ Sbjct: 254 GDKSTITETPFTGLV--DMGAEGKVEWAIAWTQAGFGEADGFARSYCNTIPTPEGGTHEA 311 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 G R A+T+GI+ + +LT NK+A + ++D+M + +LSVFIR PEF GQTK KL S A Sbjct: 312 GFRSAITKGIRNFGDLTGNKKAAEVTAEDVMGHSGLLLSVFIRGPEFVGQTKDKLSSTHA 371 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 R VENA+RD FDH+L +P EA KLL W I+R++ER +RRK +E++RK+A +KLRLPGK Sbjct: 372 FRLVENAVRDHFDHWLAGSPKEANKLLGWAIDRADERAKRRKAKEISRKSATKKLRLPGK 431 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS GTELF+VEGDSAGGSAKQARNR QA+LPLRGKILNV SA +K+ NQ+ Sbjct: 432 LADCSAKGPEGTELFLVEGDSAGGSAKQARNRETQAILPLRGKILNVESASDDKLMGNQE 491 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + DL ALG ++ +DLRYE++IIMTDADVDGAHIA+LL+TFFY+ LIE L Sbjct: 492 LADLSLALGTELGRKFNIDDLRYERIIIMTDADVDGAHIAALLITFFYRLTPGLIESGRL 551 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPLF+++ YA D+ + +I++E K G K+E++RFKGLGEM +QLKET Sbjct: 552 YLALPPLFKLSNKGNIHYAMDDADRARIMKEHFK-GNQKVEMTRFKGLGEMNPAQLKETT 610 Query: 633 MDANKRTLLRVEINKDLNSLK-DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ + RTL RV + ++ L+ + D IN LMG KA+ RF+FIQE A+F++++ Sbjct: 611 MNPSSRTLARVTLPAAMDDLEINPADLINTLMGKKAELRFRFIQENAAFVEELD 664 >gi|325961456|ref|YP_004239362.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3] gi|323467543|gb|ADX71228.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3] Length = 695 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 251/711 (35%), Positives = 372/711 (52%), Gaps = 43/711 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M +D+ D+ + S + ++ + P +PA + Y AS I +LEGLE VR Sbjct: 1 MANDNTDILAA------ESGIEDARTPDTPAAPATQRE-----YGASDITVLEGLEAVRK 49 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL EV+DN++DE +AGY IEV L +G + VVD+GRGIPV+ Sbjct: 50 RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEVVLQADGGVKVVDDGRGIPVDM 109 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP +K T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 F+ G K + + GT TF PDP IF FD L Q A+L+ Sbjct: 169 RMSFADGGKPQGSLVKGEETDLTGTTQTFYPDPAIFES-TEFDFETLRARFQQMAFLNKG 227 Query: 241 VKTCWSCDKEIA-----------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ++ + ++ A E + + GL Y++ + + Sbjct: 228 LRITLTDERTSAEEEDDADLDLDGVVTEGEVKAEHRTVVYQYDEGLLDYVKHLNSGKKVD 287 Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 E + + +E A+ W + +Y NTI T EGGTHE G R A+T Sbjct: 288 VVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 347 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + + + V+ Sbjct: 348 INRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQRV 407 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + D +L +NP A ++ I ++ R+ RK R+ R+ + + +PGKL+DCS Sbjct: 408 VTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 467 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK+ RN QA+LPLRGKILNV A +K N ++ ++ Sbjct: 468 KDPERCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 527 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+++M DADVDG HI +LL+T ++ M LIE +++L PP Sbjct: 528 AFGTGIGEDFDLSKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 587 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634 L+RI + Y + + + L + G+ + I R+KGLGEM ++L +T MD Sbjct: 588 LYRIKWSNAAHDYVYSDRERDAKLVAGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTMD 647 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTLL+V ++ L + LMG + R FIQ+ A + + Sbjct: 648 PDNRTLLQVTMDDAL----AADQIFSVLMGEDVESRRNFIQQNAKDVRFLD 694 >gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36] gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis VMC66] gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36] gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis VMC66] gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK353] gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK405] gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK678] gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK115] gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK150] gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1] gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK408] Length = 649 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|332177400|gb|AEE13090.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707] Length = 657 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 263/669 (39%), Positives = 376/669 (56%), Gaps = 21/669 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + Y ASSI++LEGLE VR RP MYIG EK LHHL EV+DN++ Sbjct: 1 MSEQEKDIMTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSI 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AGY + V + + + V DNGRGIPV+ H K KS LE+++T LHAGGKFD Sbjct: 61 DEALAGYCTEVLVEILSDNSIQVTDNGRGIPVDMHAK-EGKSALEVVMTVLHAGGKFDKG 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 +Y++SGGLHGVG+S VNALS+ L V R I+ Q++SRG PL+ +E K + GTR Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKADD-TGTR 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF+PD IF + + + L + +YL+ + + E+ P+ FY Sbjct: 179 ITFKPDDTIFRETI-YSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQ-PKSWIFYSE 236 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GL +++ + + ++ TEK+G VE A+ + + +Y N I T Sbjct: 237 NGLSEFVRYVDGAKESLIHDVIHHTTEKQGVP---VEVALTYNTSYQENVYTYVNDIHTI 293 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R LTR +KKYA + K I DD I+SV + EP+F GQT Sbjct: 294 EGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQT 353 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKT 442 KTKL + + V+ A+ + + YL ++P EA +++ VI RR + V RK+ Sbjct: 354 KTKLGNSEIVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKS 413 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS ELFIVEGDSAGG+AKQ R+ QA+LPLRGKILNV A Sbjct: 414 PLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKA 473 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREE-----DLRYEKVIIMTDADVDGAHIASLLLT 557 +I +N +I ++ ALG ++ + LRY K+IIMTDADVDGAHIA+L+LT Sbjct: 474 MQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILT 533 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ M LIE ++++ +PPL+ + Y +E K + ++ + +I+I R+ Sbjct: 534 FFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQENRIKIQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL +T M+ RTL +V I+ +L + LM + R +FI+E Sbjct: 594 KGLGEMNDVQLWDTTMNPQTRTLRQVTID----NLASADSVFSMLMSEDVEPRREFIEEN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1057] Length = 649 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QAKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV] gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV] Length = 648 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 259/654 (39%), Positives = 382/654 (58%), Gaps = 24/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A Sbjct: 5 NKELQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLH Sbjct: 65 HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F PDP+I Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD +L K Q A+L+ ++ + +E E + +++++ GG+ +Y+Q Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 EN+ +I E TVE A+ + + S+ N I T EGGTHE G Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGF 294 Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPG Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N H TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N+ Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E + Sbjct: 475 EIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534 Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PP++ + G++ Y EE Q LE + G+ K I R+KGLGEM Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGANQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|304383575|ref|ZP_07366034.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii DSM 16973] gi|304335099|gb|EFM01370.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii DSM 16973] Length = 657 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 259/669 (38%), Positives = 386/669 (57%), Gaps = 30/669 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ+ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AG+ Sbjct: 2 AENQTKENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGFC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV ++ + +TV D+GRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 KNIEVIINEDNSITVQDDGRGIPVDEHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ +RGTR F PD Sbjct: 121 HGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVG-TTERRGTRQQFWPDAT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + + + AYL+ +K + ++ G +E F+ GLK +++ Sbjct: 180 IFTT-TKYKWDIIANRMRELAYLNAGIKITLKDMR--PDEEGKLREETFHAEDGLKEFVR 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R+ + ++ KTEK+G +E A+ + + I SY N I T EGGTH +G Sbjct: 237 YVDRHRTHLFDDVIYLKTEKQGIP---IEVAVMYNNDYSENIHSYVNNINTIEGGTHLTG 293 Query: 334 LRVALTRGIKKYAE------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R+ALTR +K YA+ K I I +D ++S+ + EP+F GQTKTKL Sbjct: 294 FRMALTRTLKTYADADPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 + + V+ A+ + +YL ++P EA + + V+ + R+ RK RE RK + Sbjct: 354 GNSEVSGAVQQAVGEALSNYLEEHPKEAKLICDKVVLAATARIAARKARESVQRKNVMSG 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV K Sbjct: 414 GGLPGKLADCSNRDPKKCEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHK 473 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + + LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 474 VFEAESVMNIIQSIGVRFGVEGEGDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK--HGKGKIEISRF 617 + M +I++ HL++ +PPL+ T K Y + E+ +Q L+++ I R+ Sbjct: 534 RFMPRVIQEGHLYIATPPLYLCTYKNKVKEYCYTEQQRQAFLDKYGDGVEDGKSIHTQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET MD N R L +V I + + + LMG + R +FI++ Sbjct: 594 KGLGEMNPEQLWETTMDPNTRLLKQVNIE----NAAKADEIFSMLMGDDVEPRREFIEQN 649 Query: 678 ASFIDDVGT 686 A++ ++ Sbjct: 650 ATYA-NIDA 657 >gi|220910789|ref|YP_002486098.1| DNA gyrase subunit B [Arthrobacter chlorophenolicus A6] gi|219857667|gb|ACL38009.1| DNA gyrase, B subunit [Arthrobacter chlorophenolicus A6] Length = 695 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 244/711 (34%), Positives = 364/711 (51%), Gaps = 43/711 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M +D+ D+ + P P Y AS I +LEGLE VR Sbjct: 1 MANDNTDILAVDPAAGDAGGPDATAEAATPR-----------EYGASDITVLEGLEAVRK 49 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL EV+DN++DE +AGY + IE+ L +G + VVD+GRGIPV+ Sbjct: 50 RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCSHIEIVLQADGGVKVVDDGRGIPVDM 109 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP +K T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 F+ G + + + GT TF PD +IF FD L Q A+L+ Sbjct: 169 RMSFANGGKPQGSLVQGEETERTGTTQTFYPDAEIFET-TEFDFETLRARFQQMAFLNKG 227 Query: 241 VKTCWSCDKEIAEK-----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ++ + ++ E+ + + GL Y++ + + Sbjct: 228 LRITLTDERAATEEEADADPDLDGMVTEGEINAEHRTVVYQYDEGLLDYVKHLNSGKKVD 287 Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 E + + +E A+ W + +Y NTI T EGGTHE G R A+T Sbjct: 288 VVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTSL 347 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + + + V+ Sbjct: 348 VNRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEVKGFVQRV 407 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + D +L +NP A ++ I ++ R+ RK R+ R+ + + +PGKL+DCS Sbjct: 408 VTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCSS 467 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK+ RN QA+LPLRGKILNV A +K N ++ ++ Sbjct: 468 KDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNAEVQSMIT 527 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A G + LRY K+++M DADVDG HI +LL+T ++ M LIE +++L PP Sbjct: 528 AFGTGIGEDFDLAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQPP 587 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMD 634 L+RI Y + + + L + G+ + I R+KGLGEM ++L +T MD Sbjct: 588 LYRIKWSNAPHDYVYSDRERDAKLVSGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTMD 647 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTLL+V ++ L + LMG + R FIQ+ A + + Sbjct: 648 PDNRTLLQVTMDDAL----AADQIFSVLMGEDVESRRNFIQQNAKDVRFLD 694 >gi|281491482|ref|YP_003353462.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis KF147] gi|281375200|gb|ADA64713.1| Topoisomerase IV, subunit B [Lactococcus lactis subsp. lactis KF147] Length = 644 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 246/653 (37%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD S+I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I V++ Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P + LEK K ++K GT++TF PD IF Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + EKEEF++ G++ ++ E+ Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + ++ G VE A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + +YA ++ ++ D +LSV I +F GQTK KL S A+ Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + YL++N A L+ I+ E R RK RE +R K G Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N+ Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + ++ ++F K+ + R+KGLGEM A Q Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL++V I+ + ++ LMG K + R K+I+ F Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636 >gi|167646829|ref|YP_001684492.1| DNA topoisomerase IV subunit B [Caulobacter sp. K31] gi|167349259|gb|ABZ71994.1| DNA topoisomerase IV, B subunit [Caulobacter sp. K31] Length = 707 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 378/648 (58%), Positives = 464/648 (71%), Gaps = 14/648 (2%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI +LEGLEPVRMRPGMYIGGTDE+ALHHLF+EV+DN+MDE +AG+A IEV LD Sbjct: 67 YDASSIEVLEGLEPVRMRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVRLDA 126 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G+L+V D+GRG+PV+ HPK P KS LE+I+T LHAGGKF YE SGGLHGVG SVVN Sbjct: 127 DGYLSVKDDGRGMPVDEHPKHPGKSALEVIMTVLHAGGKFSGKAYETSGGLHGVGASVVN 186 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ + VTV R Q F+RG PL P++K + RGT + F+PD +IFGD F Sbjct: 187 ALSELVEVTVWRDGFEHLQSFARGKPLGPVQKIAPSKK-RGTMVRFKPDDQIFGDNVAFK 245 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ARL +M +SKAYL V+ WSCD P + F+FP GL +L + + L+ Sbjct: 246 PARLYRMARSKAYLFRGVQIKWSCDPSRILD-QTPAEATFHFPNGLADFLAERTKGLELV 304 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVAL 338 + + F+G+ E++G G VEWAIAW E + + SYCNT+ T EGGTHESGLR L Sbjct: 305 TPDSFSGRIERQGEA-GAVEWAIAWTPRGFGEHDGFMQSYCNTVPTPEGGTHESGLRAVL 363 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 TRG+K YAEL KRA I +DD++ A ++SVFI+ PEF GQTK KL S +AQR VEN Sbjct: 364 TRGLKAYAELKNEKRAAIITADDVIAQAGALISVFIKNPEFQGQTKEKLSSSEAQRFVEN 423 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ALRDPFDH+L +P A LLE+VIER+EERL+RRK +EV R +A RKLRLPGKLADC+ Sbjct: 424 ALRDPFDHWLTGSPKAAQALLEFVIERAEERLKRRKDKEVQRASATRKLRLPGKLADCAA 483 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 G ELFIVEGDSAGGSAKQARNR NQA+LPLRGKILNVASA EK N+++ DL+ Sbjct: 484 GAVDGAELFIVEGDSAGGSAKQARNRKNQAILPLRGKILNVASASGEKFTANKELSDLML 543 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + ++Y+EEDLRYE++IIMTDADVDGAHIASLL+TFFY+ M DLI Q HLFL PP Sbjct: 544 ALGAQGGARYKEEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPDLIRQGHLFLALPP 603 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI+ G KS YA D+EHK ++L K K EI RFKGLGEM+ASQLKET MD R Sbjct: 604 LYRISHGGKSAYARDDEHKDELLATMFK--GKKPEIGRFKGLGEMMASQLKETTMDPAVR 661 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685 TL ++ + S + + + LMG K + RF+FIQE A F DD+ Sbjct: 662 TLAKITLP---RSEEAVEALVETLMGRKPELRFRFIQENAEFAADDLD 706 >gi|294630343|ref|ZP_06708903.1| DNA gyrase, B subunit [Streptomyces sp. e14] gi|292833676|gb|EFF92025.1| DNA gyrase, B subunit [Streptomyces sp. e14] Length = 685 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 256/683 (37%), Positives = 384/683 (56%), Gaps = 25/683 (3%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 E + + + A ++ + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL E Sbjct: 9 ENIPSTDAGENGAAASSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVYE 68 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHAG Sbjct: 69 VVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 127 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P +PL + E+ Sbjct: 128 GKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVRTDGYRWTQDYKMGVPTAPLARHEETA 187 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--------- 251 GT +TF D IF + L + Q A+L+ + + ++E Sbjct: 188 E-TGTSVTFWADADIFET-TEYSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADE 245 Query: 252 --AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC 309 A++ + +++ GG+ +++ + + + ++E A+ W Sbjct: 246 AGADETDEVKSVTYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWN 305 Query: 310 EENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISA 366 E + S+ N I T EGGTHE G R ALT I KYA + + ++ DD+ Sbjct: 306 GGYSEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGL 365 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 I+SV + EP+F GQTKTKL + +A+ V+ A+ + + +L +NP+EA ++ I+ + Sbjct: 366 TAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAA 425 Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 426 TARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPE 485 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LP+RGKILNV A +KI NQ+I L+ A G + E LRY K+I+M DAD Sbjct: 486 YQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMADAD 545 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEF 604 VDG HI++LLLTF ++ M L+E H++L PPL++I G + YA+ + + ++E Sbjct: 546 VDGQHISTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMG 605 Query: 605 KKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 ++ GK + I RFKGLGEM A +L+ T MD R L +V ++ D + L Sbjct: 606 RQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSVL 661 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG + R +FIQ A + + Sbjct: 662 MGEDVEARRQFIQRNAKDVRFLD 684 >gi|126179353|ref|YP_001047318.1| DNA gyrase, B subunit [Methanoculleus marisnigri JR1] gi|125862147|gb|ABN57336.1| DNA gyrase subunit B [Methanoculleus marisnigri JR1] Length = 656 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 253/671 (37%), Positives = 375/671 (55%), Gaps = 43/671 (6%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D YDAS I +LEGL PVR RP MYIG T+ + LHHL EV+DNA+DE +AG+ +LI+V+ Sbjct: 2 TDTYDASHITVLEGLRPVRERPAMYIGSTESRGLHHLVYEVVDNAVDEALAGFCDLIQVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ +G ++V DNGRGIPV+ P++ KS LEI+LT LHAGGKFD +TY++SGGLHGVG+S Sbjct: 62 VNRDGSVSVDDNGRGIPVDLMPQY-GKSALEIVLTVLHAGGKFDKNTYQVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK------------------ 202 VVNALS L TV + +++ +F +G+ PL + + ++ Sbjct: 121 VVNALSSWLDATVFKDGNVYAMQFRQGLVAKPLASRPETEHEMEARYEERYGARDGQPLD 180 Query: 203 ----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 RGTRITF+PD IF FD L + AYL+ + ++ Sbjct: 181 YERLRGTRITFQPDRSIFETV-EFDYDVLDHRLRELAYLNSGLTIVLRDER-------TG 232 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + + F G++ ++ E + + +I + ++ + VE A+ + I + Sbjct: 233 DVVTYCFEDGIRQFVAHLGEGKESLHDDIIYFQ-KRDSESKVEVEVALQYNNSYSETIYT 291 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIR 375 Y N++ T EGGTH G R ALTR I A + + +D+ ++S + Sbjct: 292 YVNSVNTREGGTHLEGFRSALTRAINSAAHRNNLLKNNDAQVKGEDVREGLACVISTRVA 351 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 P+F GQTK +L + + + V++ + Y ++P +++ + + R R Sbjct: 352 NPQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQTVVDKAMAAARAREAARTA 411 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE+ R+ + + LPGKLADC + +EL+IVEGDSAGGSAKQ R+R QA+LPLRG Sbjct: 412 RELARRKSTLESTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRG 471 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A KI N +I L+ A+G + E RY ++I+MTDADVDGAHI +L Sbjct: 472 KILNVEKASEHKILKNAEIQALISAIGTGVGDSFDAERARYHRIILMTDADVDGAHIRTL 531 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 LLTFFY+ M L+E ++++ PPL+R+ +G + Y + EE ++IL E+ + G + I Sbjct: 532 LLTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKG---VSI 588 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM A QL T MD R L +V+I + KLMG D R FI Sbjct: 589 QRYKGLGEMNAGQLWSTTMDPANRILKQVKIED----AAYANEIFEKLMGENVDARRDFI 644 Query: 675 QERASFIDDVG 685 + A + ++ Sbjct: 645 RRHAKEVSNLD 655 >gi|269793364|ref|YP_003312819.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542] gi|269095549|gb|ACZ19985.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542] Length = 683 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 247/690 (35%), Positives = 366/690 (53%), Gaps = 33/690 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 +E + P + + Y AS I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 2 AELNNAADSEPSTHVPG--TVDGGYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 59 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AGY + IEV+L +G + VVDNGRGIPV+ HP + T+E+++T LHA Sbjct: 60 EVVDNSVDEALAGYCDHIEVTLLDDGGVRVVDNGRGIPVDIHP-TEGRPTVEVVMTILHA 118 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVGISVVNALS + V RQ + Q F+ G +K Sbjct: 119 GGKFGGGGYAVSGGLHGVGISVVNALSTRVETVVRRQGFTWHQSFADGGKPVGELRKGDA 178 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP- 258 ++ GT+ TF D IF +D L Q A+L+ ++ + ++ + Sbjct: 179 TDQTGTQQTFWADGSIFET-TRYDFETLRARFQQMAFLNKGLQISLTDERSDVAETDDEV 237 Query: 259 -------------EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVE 303 + + GL Y+ + ++ +I ++E R ++E Sbjct: 238 TGAEDGEGAGAQARTVVYKYDRGLLDYVAHLNSAKRVEIVHEDIIAFESE-DTERRISLE 296 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 A+ W + +Y NTI T EGGTHE G R A+T + +YA ++ ++ D Sbjct: 297 VAMQWTNAYSESVHTYANTISTTEGGTHEEGFRAAMTSLVNRYARAKGIIKEKDDNLTGD 356 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ ++S+ + EP+F GQTKTKL + +A+ V++ + + +L +P+EA ++ Sbjct: 357 DIREGLTAVISIKLGEPQFEGQTKTKLGNTEAKTFVQSVVNEQLGDWLDSHPVEAKDIIR 416 Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I+ S+ RL RK RE R+ + +PGKL DC N E++IVEGDSAGGSA Sbjct: 417 KAIQASQARLAARKAREATRRKGLLESGGMPGKLRDCQSNKPEECEVYIVEGDSAGGSAV 476 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 + RN QA+LP+RGKILNV A +K NQ++ L+ A G + LRY K++ Sbjct: 477 RGRNPRTQAILPIRGKILNVERARLDKALGNQEVQALITAFGTGIGEDFDIAKLRYHKIV 536 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598 +M DADVDG HI +LLLT ++ M LIE ++L PPL+RI Y + + + Sbjct: 537 LMADADVDGQHICTLLLTLLFRYMRPLIEHGMVYLAQPPLYRIKWSNAEHDYVYSDRERD 596 Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + + +GK + I R+KGLGEM S+L +T MD + RTLL+V ++ Sbjct: 597 EYIAAGLANGKRIPKDNGIQRYKGLGEMDYSELWDTTMDPDHRTLLQVTLDD----AAAA 652 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FIQ A + + Sbjct: 653 DEIFSVLMGEDVESRRNFIQRNAKDVRFLD 682 >gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88] gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88] Length = 637 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 380/653 (58%), Gaps = 22/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 Q YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY + Sbjct: 2 EQDKKQKYDESQIQVLEGLEAVRKRPGMYIGSTGARGLHHLVYEIVDNSIDEALAGYCDK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I++ ++ + +T+ DNGRG+PV HPK NK T+E+I+T LHAGGKF Y++SGGLHG Sbjct: 62 IDIYINEDNSITIEDNGRGMPVGLHPKM-NKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS E V V R ++ Q + +GI ++ LEK + + GT+ F+PDP IF Sbjct: 121 VGASVVNALSSECRVEVKRDGYVWRQVYEKGIAVTGLEKIGETS-QHGTKTYFKPDPTIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L++ + A+L+ + + + +KE+F++ GG+K+++ Sbjct: 180 DEL-EFEYDVLVQRLREMAFLNKGINITIEDKR-------VDKKEDFHYEGGIKSFVLYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + ++ E + K VE +I + + I S+ N I T EGGTH +G + Sbjct: 232 NRTKEVLHKEPIYIEGMKDEHM---VEISIQYNDGYAENIFSFANNISTIEGGTHLAGFK 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+TR YA + ++ +D+ I+SV + +P+F GQTKTKL + + + Sbjct: 289 SAVTRAFNDYARRYGFLKENDKNLAGEDIREGITAIISVKLIDPQFEGQTKTKLGNSEVR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V+ + + ++L +NP A +++ ++ R+ + RK+ + LPGK Sbjct: 349 GIVDTIVGEGVGNFLEENPQIAKSIIDKTLMAARAREAARKARDLTRRKSVLESTSLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS E++IVEGDSAGGSAKQ RNR QA+LPLRGKI+NV +KI N+ Sbjct: 409 LADCSSKDPKECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILNSDT 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G + E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+E H+ Sbjct: 469 IKSMITAFGAGIGKDFDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVENGHV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++++ K Y + + ++IL+E K +I R+KGLGEM A QL +T Sbjct: 529 YIAQPPLYKVSKDRKEHYVYTDRELEEILDEIGGRDN-KTQIQRYKGLGEMNAEQLWDTT 587 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ +KR LLR I + + LMG K D R +FIQE A + ++ Sbjct: 588 MNPDKRILLRATIEDAM----AADEIFTILMGDKVDLRREFIQENAKTVVNLD 636 >gi|298246161|ref|ZP_06969967.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297553642|gb|EFH87507.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 668 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 254/672 (37%), Positives = 389/672 (57%), Gaps = 21/672 (3%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 + S + D + ++ Y +I+ILEGLE VR+RPGMYIG TD++ LHHL Sbjct: 13 ATPANTISSSDEVDLGSTTQNHGNNGYSGQNIQILEGLEAVRVRPGMYIGATDQRGLHHL 72 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DEV+AGYA+ I+V++ +G +T+ DNGRGIPVE H + P STLE+++T L Sbjct: 73 IQEVVDNSVDEVMAGYADTIQVTIHADGSVTIEDNGRGIPVEEHHQRPGMSTLEVVMTVL 132 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y+IS GLHGVG+SVVNALS+ V V R ++ Q++ +G P++ L Sbjct: 133 HAGGKFGGGGYQISSGLHGVGVSVVNALSEWCQVDVRRDGKVYRQRYEKGTPVTKLAAVG 192 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 GTR +F PD + ++ L + + AYL+ + C ++ E Sbjct: 193 -SFEGTGTRTSFMPDLSVMET-RDYNFDMLAQRFREMAYLNRGMTICIRDERSDREAT-- 248 Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEIT 316 FYF GGL ++++ +NR+ + + + E + V+ A+ + + + Sbjct: 249 -----FYFEGGLVSFVRYLNKNRNTLQARPASASRE---IDKVKVDIALQYNDSWSTTEF 300 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374 S+ N I T +GG H +G R ALTR + YA T ++ ++ DD+ ++SV I Sbjct: 301 SFANGINTVDGGMHITGFRSALTRSLNDYARKTGLLKEKDPNLTGDDVRQGLAVVVSVKI 360 Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 P+F QTK+KL + + + VEN D + YL + P EA ++ + ++ R R Sbjct: 361 PNPQFEAQTKSKLNNAEIRPIVENITADMLNRYLEETPSEAKAIISKCLTSAKAREAARA 420 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 R++ ++ + LPGKLADCS+ A EL++VEGDSAGGSAKQ R+R QA+LPLRG Sbjct: 421 ARDLVQRKNVLDTTLPGKLADCSERRADRCELYLVEGDSAGGSAKQGRDRHFQAILPLRG 480 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV +KI +N+++ +++ A+G Q+ LRY +V+IM DADVDGAHI +L Sbjct: 481 KILNVERVTLDKILHNEEVKNIITAVGVGIGEQFNLSRLRYGRVVIMCDADVDGAHIRTL 540 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IE 613 LLTFFY+ M +LI HL++ PPL+ + G + + + EE + ++ E+K GK E Sbjct: 541 LLTFFYRYMPELIGGGHLYIAQPPLYHVKFGKQVHFVYTEEERDALINEYKATHNGKEPE 600 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 + R+KGLGEM L ET MD +RT+L+V +++ + + + LMG + R +F Sbjct: 601 VGRYKGLGEMNPETLWETTMDPERRTILKVSVDEAV----EADKVFSMLMGDEVAPRRRF 656 Query: 674 IQERASFIDDVG 685 I+ A ++ Sbjct: 657 IESHARNA-NLD 667 >gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK160] Length = 649 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 258/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV +N + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVND----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281361|gb|EDT46796.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 650 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V+V R I Q++ RG + L+ ++ GT + F PD +IF + Sbjct: 131 VVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHFTPDGEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ EN+ Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYHYEGGISSYVEFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I + E G +VE A+ + + S+ N I T EGGTHE G R ALT Sbjct: 245 DVIFDKPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ ++ DD+ ++SV P+F GQTKTKL + + + Sbjct: 302 RVINDYARQNKLLKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 D F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSDAFGRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N A ELFIVEGDSAGGSAK R+R +QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y E Q +E + +G+ K + R+KGLGEM QL T Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEAELQAAIERYS-NGRSKPSVQRYKGLGEMDDHQLWAT 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG K + R +FI+E A + Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909] Length = 643 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 381/657 (57%), Gaps = 25/657 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 2 EQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 62 KVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + + Q++ RG+ ++ LE + GT + F PDP+IF Sbjct: 121 GSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD +L K Q A+L+ ++ S +E E +++ GG+ +Y++ Sbjct: 180 ETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YHYEGGIGSYVEFIN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I E G +VE A+ + + S+ N I T EGGTHE G R Sbjct: 235 ENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRT 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 292 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F+ +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 352 ITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 412 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + +RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 472 RSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 531 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE ++ L+ + G+ K + R+KGLGEM QL Sbjct: 532 IAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQL 590 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R + RV ++ + + LMG + + R +FI+ A + ++ Sbjct: 591 WETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 642 >gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus equinus ATCC 9812] gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus equinus ATCC 9812] Length = 650 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 376/649 (57%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V+V R I Q++ RG + L+ ++ GT + F PD +IF + Sbjct: 131 VVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHFTPDGEIFTETI 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y+Q EN+ Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEQHYHYEGGISSYVQFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I E G +VE A+ + + S+ N I T EGGTHE G R ALT Sbjct: 245 DVIFDTPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ ++ DD+ ++SV P+F GQTKTKL + + + Sbjct: 302 RVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 D F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAK R+R +QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDVTMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + + RY K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGADFDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y E Q +E + +G+ K + R+KGLGEM QL T Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQESELQAAIERYS-NGRSKPSVQRYKGLGEMDDHQLWAT 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG K + R +FI+E A + Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|163795529|ref|ZP_02189495.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199] gi|159179128|gb|EDP63661.1| Type IIA topoisomerase, B subunit [alpha proteobacterium BAL199] Length = 669 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 367/665 (55%), Positives = 471/665 (70%), Gaps = 16/665 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + +D+Y A I +LEGLEPVR RPGMYIGG DE+ALHHL +EV+DN MDE +AG+A Sbjct: 6 ASSAARTDDYSAKDIEVLEGLEPVRRRPGMYIGGVDERALHHLVAEVLDNCMDEAVAGHA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IE+ L + +TV DNGRGIPV+ HPKFP+KS LE+ILTTLH+GGKF + Y +GGL Sbjct: 66 SWIEIELAADHTVTVRDNGRGIPVDPHPKFPSKSALEVILTTLHSGGKFSDKVYATAGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALSD L V VAR +++Q+F+RG+PL PLE N+RGT + F PDP+ Sbjct: 126 HGVGVSVVNALSDRLEVEVARDRRLYAQRFARGVPLGPLETIGAAPNRRGTTVRFHPDPE 185 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYL 273 IFG A F A L +M++SKAYL V+ W D E + + G P + ++PGGL +L Sbjct: 186 IFGPNAHFRPATLYRMSRSKAYLFKGVEIRWKVDPELLRDGDGTPAEAVIHYPGGLADFL 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHE 331 + +E R I+ FTG +G VEWA W + ++ + +YCNTI T +GGTHE Sbjct: 246 ASSIEGRRTIAERPFTGDVAAPD-GQGRVEWAATWPDDQDDGFLHAYCNTIPTPQGGTHE 304 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +GLR AL RG+K Y E+ NKRA + +DDLM A +LSVFIR+P+F GQTK +LVS + Sbjct: 305 AGLRTALLRGVKAYGEMVGNKRAAQVTADDLMGGACIMLSVFIRDPQFQGQTKDRLVSQN 364 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A R VE A++D FDH+L P A LLE +IER+E+RLRRR+Q+EV+RKTA RKLRLPG Sbjct: 365 ATRMVEQAVKDHFDHWLSGAPEIANLLLERLIERAEDRLRRRQQKEVSRKTATRKLRLPG 424 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS++ A GTE+F+VEGDSAGGSAKQAR R+ QA+LPLRGKILNVASA ++K+R NQ Sbjct: 425 KLADCSRSDADGTEIFLVEGDSAGGSAKQARERATQAILPLRGKILNVASASADKLRQNQ 484 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ DLVQALGC S ++ + LRYEKV+IMTDADVDGAHIASLL+TFFY+EM LIE+ H Sbjct: 485 ELADLVQALGCGAGSSFKLDQLRYEKVVIMTDADVDGAHIASLLMTFFYREMPRLIEEGH 544 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 LFL PPL+R+TQG K+VYA D+ HK +++ GK K+EISRFKGLGEM QLKET Sbjct: 545 LFLAMPPLYRLTQGGKTVYARDDAHKDELMAT-AFSGKAKVEISRFKGLGEMPPMQLKET 603 Query: 632 AMDANKRTLLRVEINKD-----------LNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R LLRV + + T + + LMG K + RF +IQ A F Sbjct: 604 TMNRQTRQLLRVRVPPSGGPGLVLEPELEAETRRTSEMVESLMGKKPELRFAYIQANARF 663 Query: 681 IDDVG 685 + DV Sbjct: 664 VHDVD 668 >gi|295101859|emb|CBK99404.1| DNA gyrase subunit B [Faecalibacterium prausnitzii L2-6] Length = 664 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 244/671 (36%), Positives = 372/671 (55%), Gaps = 31/671 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + A + Y+AS I++L+GLE VR RPGMYIG T E+ LHHL E++DNA+DE +A Sbjct: 7 TSTNAETATDHEYNASEIQVLKGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNAIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYE 149 GY + IEV + + V DNGRGIPV+ + ++ T LHAGGKF +NS Y+ Sbjct: 67 GYCDHIEVKILKGDIIQVTDNGRGIPVDIQA-DTGLPAVTVVYTILHAGGKFGGENSGYK 125 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 ++GGLHGVG SVVNA S+ L V V R + Q F RG P PL+ V + GTR+T Sbjct: 126 VAGGLHGVGASVVNACSEWLTVNVRRDGREYEQTFRRGDPDGPLKCIGTVDPSVTGTRVT 185 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------IAEKYGIPEK 260 F+PDP++F D ++ L K + +++L+ VK + ++E E Sbjct: 186 FKPDPEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGKEGEPTYRT 245 Query: 261 EEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E + GG+K+++ E R ++ + K + RG E A+ + + S Sbjct: 246 EVMCYEGGIKSFVTYLGEKRDLEVLHPNVIYLKGQTD---RGMAEIALQYNSSYNELLLS 302 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N + T +GGTHE G R +LTR Y + ++ D+ + ++SV ++ Sbjct: 303 FANNVNTPDGGTHEEGFRSSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQ 362 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRK 434 E EF GQTK KL + + + V N + + +NP A + + ++ Sbjct: 363 EAEFEGQTKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKA 422 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 + V RK+A+ R+PGKLADC + TE+FIVEGDSAGGSAK R+ + QA+LPL G Sbjct: 423 RELVRRKSALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWG 482 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 K+LNV A +++I N ++M +V ALGC ++ LRY+KV IM DADVDG+HI +L Sbjct: 483 KMLNVEKARADRIYGNDKLMPVVLALGCGIGDEFDISKLRYDKVFIMADADVDGSHICTL 542 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 +LTFF++ M LIEQ H+++ PPLF++ +G+ YA+++ + +E +I Sbjct: 543 MLTFFFRYMRPLIEQGHVYVAQPPLFKVQKGSTIKYAYNDAEMALLSQEMP-----GAKI 597 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 +R+KGLGEM QL ET M+ + R ++R+ I + ++ LMG + + R +FI Sbjct: 598 NRYKGLGEMNPEQLWETTMNPDNRVIVRITIED----AEKADEAFTILMGDQVEPRRRFI 653 Query: 675 QERASFIDDVG 685 + A + + Sbjct: 654 ETNAQYAK-LD 663 >gi|146340513|ref|YP_001205561.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. ORS278] gi|146193319|emb|CAL77335.1| DNA topoisomerase IV, subunit B [Bradyrhizobium sp. ORS278] Length = 691 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 383/671 (57%), Positives = 483/671 (71%), Gaps = 9/671 (1%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 + K K + PA + Y A I +LEGLEPVR RPGMYIGGTDEKALHHLF+ Sbjct: 24 AAKGKAQTKHQAKPAARAAGSEGEYTARDIEVLEGLEPVRRRPGMYIGGTDEKALHHLFA 83 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EVIDN+MDE +AG+A IEV LD GFLTV DNGRGIP++ HPKFP KS LEII+ TLHA Sbjct: 84 EVIDNSMDEALAGHATFIEVELDAQGFLTVTDNGRGIPIDPHPKFPKKSALEIIMCTLHA 143 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKFD+ YE SGGLHGVGISVVNALS L V VAR ++ F RG P LE+ K Sbjct: 144 GGKFDSKVYETSGGLHGVGISVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEVGKA 203 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N+RGT++ F+PDP IFG KA F RL KM +SKAYL G V+ W CD + + + Sbjct: 204 PNRRGTKVRFQPDPTIFGAKATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQ 263 Query: 260 KE-EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITS 317 E F+FPGGLK YL + +L+ +IF GK+ + G H G EWA+AW + + ++S Sbjct: 264 PEATFHFPGGLKDYLAAAIHADTLVHPDIFAGKSGRTGGH-GGCEWAVAWTADADGFLSS 322 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIRE 376 YCNTI T +GGTHESG+R AL RG+K +AE KR+ +I S+D+M A +LSVF+RE Sbjct: 323 YCNTIPTPDGGTHESGIRSALLRGLKDHAERVGQGKRSANITSEDIMAGAAIMLSVFVRE 382 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 PEF GQTK +L + +AQR VE A++DPFDH+L NP++A +LL++V+ER+EER+RRR+++ Sbjct: 383 PEFQGQTKDRLATAEAQRIVEQAVKDPFDHWLSGNPVQANRLLDFVVERAEERIRRRQEK 442 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 E RKTA +KLRLPGKLADC+ G+ELFIVEGDSAGGSAKQAR+R QAVLPLRGKI Sbjct: 443 ETARKTATKKLRLPGKLADCTDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKI 502 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNVASAG +K+ N Q+ DLV A+G T + YREEDLRY+++IIMTDADVDGAHIASLL+ Sbjct: 503 LNVASAGKDKLTANAQLADLVMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLLI 562 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFFY++M LI++ HL+L PPL+R+T G+K+ YA D+ H+ ++L + + K+EI R Sbjct: 563 TFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTFYARDDAHRDELLRR-EFNANAKVEIGR 621 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM+ +QLKET MD KRTLLRV + D T DS+ +LMGTKA+ RF FI E Sbjct: 622 FKGLGEMMPAQLKETTMDPAKRTLLRVMLLADDRDG--TADSVERLMGTKAEARFAFISE 679 Query: 677 RASFIDD--VG 685 +A F D + Sbjct: 680 KAEFASDELLD 690 >gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z] gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z] Length = 651 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 260/666 (39%), Positives = 369/666 (55%), Gaps = 38/666 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +DNYDAS I +LEGL PVR RP MYIG TD + LHHL EV+DN++DE +AG+ I + Sbjct: 2 TDNYDASHITVLEGLTPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCKHIVII 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ NG ++V D+GRGIPV+ PK NKS LE+++T LHAGGKFD +TY++SGGLHGVG+S Sbjct: 62 INPNGSVSVEDDGRGIPVDIMPKQ-NKSALEVVMTVLHAGGKFDKNTYQVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------K 202 VVNALS L V R I+S F +G+ L PL + + Sbjct: 121 VVNALSTRLTAEVYRDGNIYSMVFGKGVLLQPLTSRPETDEEYLLRQKRLDKEGQPKETT 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GTRITF PD IF FD L + AYL+ ++ + + + Sbjct: 181 TGTRITFYPDGSIFETT-EFDYDVLAHRFRELAYLNKGLEIHVEDHR-------TGDSDT 232 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNT 321 F + GGL+ ++ E + L+ E + ++ VE A+ + + EI Y N+ Sbjct: 233 FCYEGGLRQFVAHLNEGKELLHPEPIYVD-KSDDVNKIEVEVALQYNDTYGEILYTYVNS 291 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFA 380 + T EGGTH G R ALTR I A + K +S+ +D+ ++SV I P+F Sbjct: 292 VNTREGGTHLEGFRSALTRAINNIAHANKHLKEDVSVRGEDVREGLTAVISVKIANPQFE 351 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 GQTK +L + + + V++ + + +NP + + ++ + R R+ +E Sbjct: 352 GQTKMRLGNSNVKGLVDSMMYQALTEFFEENPKVIAAIAKKSLDAANAREAARRAKELAR 411 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RKT++ LPGKLADCS+ +E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV Sbjct: 412 RKTSLEMSGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 471 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A K N +I L+ A+G ++ E RY ++IMTDADVDGAHI LLLTFF Sbjct: 472 EKALEHKALKNAEIQTLITAIGAGYGDKFDAERARYHHIVIMTDADVDGAHIRILLLTFF 531 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 Y+ M L+E ++++ PPLFRI +G + Y + EE + + E+ + G I + R+KG Sbjct: 532 YRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKG---ISVQRYKG 588 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A QL T M+ R L +V I + KLMG R FI+ A Sbjct: 589 LGEMNAGQLWNTTMNPEFRILKQVRIED----ASYANEIFEKLMGDDVMPRKDFIKRHAG 644 Query: 680 FIDDVG 685 + ++ Sbjct: 645 EVKNLD 650 >gi|257054095|ref|YP_003131927.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017] gi|256583967|gb|ACU95100.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017] Length = 654 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 259/662 (39%), Positives = 382/662 (57%), Gaps = 26/662 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y ASSI +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGYA+ +E Sbjct: 3 AKNSEYSASSITVLEGLEAVRKRPGMYIGSTGVRGLHHLIQEVVDNSVDEAMAGYASRVE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + VVD+GRGIPVE HP K T+EI+LT LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLADGGVRVVDDGRGIPVEPHP-VHGKPTVEIVLTQLHAGGKFDSDSYAVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L V + R I++Q++ +P + ++ GT +TF DP+IF Sbjct: 122 VSVVNALSSALEVEIHRDGRIWAQRYENSVPGEL--VDKGPTDRSGTSVTFWADPEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE-------FYFPGGLKT 271 ++A + + Q A+L+ + ++ E+ E +Y+PGGL+ Sbjct: 180 -TEYNAETVARRLQEMAFLNKGLTMILRDERVTDEEGEDATGERAQLKERTYYYPGGLED 238 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 +++ +R I + + + + G VE A+ W + P + ++ NTI T EGGTH Sbjct: 239 FVKYINASREAIHPSVISFEQKGDG---LEVEVAMQWNDGYTPSVYTFANTINTHEGGTH 295 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR + YA + ++ ++ DD+ I+S+ + EP+F GQTKTKL Sbjct: 296 EEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLTEPQFEGQTKTKLG 355 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + +A+ V+ A + + +NP EA ++ + ++ RL RK R+ V RK A+ Sbjct: 356 NSEARSFVQTACNEWLADWFERNPTEAKLIINKAVSSAQARLAARKARDLVRRKGAMDIG 415 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC N EL+IVEGDSAGGSAK+ R+ QA+LP+RGKI+NV A +K+ Sbjct: 416 GLPGKLKDCRSNDPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRGKIINVEKARIDKV 475 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ++ L+ ALG + LRY K++IM DADVDG HI +LLLT ++ M L+ Sbjct: 476 LKNQEVQSLITALGTGIHDDFDISKLRYHKIVIMADADVDGQHIRTLLLTLLFRFMRPLV 535 Query: 568 EQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 EQ H++L PPL++I + YA+ + + +L + G+ + I R+KGLGEM Sbjct: 536 EQGHVYLAQPPLYKIKWPRMEPQYAYSDRERDGLLRAGAEAGRKLPKDDGIQRYKGLGEM 595 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A +L ET MD + R LL+V ++ + + LMG + R FI A + Sbjct: 596 NAEELWETTMDPSNRVLLQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKGVQF 651 Query: 684 VG 685 + Sbjct: 652 LD 653 >gi|262341127|ref|YP_003283982.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272464|gb|ACY40372.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 642 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 260/654 (39%), Positives = 389/654 (59%), Gaps = 29/654 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + NY A SI+ LEG+E +R+RP MYIG + LHHL EVIDN++DE +AG+ Sbjct: 1 MSKHNTTKNYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVYEVIDNSVDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V++ NGF+T++DNGRGIP++ H K KS LE+++T + AGGKFD ++Y++SGGL Sbjct: 61 NKIWVTIHKNGFITILDNGRGIPIDIHKK-EGKSALEVVMTKIGAGGKFDKNSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGIS VNALS++L VT+ R I+ Q++ +G L ++ K N +GT+I + DP Sbjct: 120 HGVGISCVNALSEKLIVTIYRNRKIYQQEYLKGKALYSVKCLGKT-NMQGTKIHYLVDPS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF ++ ++ + A+L+ + ++E + E F+ GLK YL Sbjct: 179 IFQT-ITYNYEIIVNRLKELAFLNKGLYLFLKDERENIK-------EHFFSKNGLKEYLT 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N+ ++ + + EK T VE A+ + +I SY N I T EGGTH SG Sbjct: 231 ILDKNQESLTKNVIFIEGEKDNTI---VEVAMQYNTSFKEKIYSYVNNINTYEGGTHLSG 287 Query: 334 LRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 R ALTR +KKY + NK + + DD I+SV + EP+F GQTKTKL + Sbjct: 288 FRRALTRTLKKYTDGYGILSNKDKVELTGDDFREGITAIISVRVMEPQFEGQTKTKLSNH 347 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRL 449 + V+ + + + YL ++P + K+++ VI + R+ + + ++ I L Sbjct: 348 EVGGIVDKIVGEMLNSYLEEHPSDRKKIIDKVILAAKARQAARKAREFIQKRNPINNSIL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS N E+++VEGDSAGG+AKQ R+R+ QAVLPLRGKILNV A KI Sbjct: 408 PGKLADCSFNNPENCEIYLVEGDSAGGTAKQGRDRNFQAVLPLRGKILNVEKAMQYKIFE 467 Query: 510 NQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ +LG + + + LRY K+IIMTDAD+DG+HI++L+LT F++ M Sbjct: 468 NEEIKNIFASLGVSIETEEDQEIFNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMK 527 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 LIE+ H+++ +PPL+ I +G S YA ++E ++ IL + G+ + I R+KGLGEM Sbjct: 528 PLIEKGHIYIATPPLYLIRKGNHSQYAWNDEERENILNQLG--GRKSVNIQRYKGLGEMN 585 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 A QL ET M+ RTL +V I D + + LMG + R FI++ A Sbjct: 586 AEQLWETTMNPKNRTLRKVNIEND----SEADKIFSILMGDEVPPRRNFIEKNA 635 >gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J] gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J] Length = 650 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 257/657 (39%), Positives = 377/657 (57%), Gaps = 27/657 (4%) Query: 36 ANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 N++ +N YDAS I++LEGLE VRMRPGMYIG T + LHHL E++DN++DE +AG Sbjct: 4 ENKNLEENVQEYDASQIQVLEGLEAVRMRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAG 63 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SG Sbjct: 64 FATHIEVFIEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSG 122 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V + I Q+F RG+ + L + GT + F PD Sbjct: 123 GLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTGTTVHFTPD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + F+ +L K Q A+L+ ++ + ++ E + +F++ GG+ +Y Sbjct: 182 PEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIE-----QNHDFHYEGGISSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ E + +I E G VE A+ + + S+ N I T EGGTHE Sbjct: 237 VEYLNEKKDVIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + Sbjct: 294 QGFRTALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + + F +L++NP A K+++ I S+ R+ ++ RE +K+ + Sbjct: 354 SEVVKITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISN 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 414 LPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G S + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E Sbjct: 474 ANEEIRSLFTAMGTGFGSDFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLE 533 Query: 569 QKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 ++++ PP++ + G + Y E Q+ LE++ G+ K + R+KGLGEM Sbjct: 534 AGYVYIAQPPIYGVKVGNEIKQYIQPGINQETELQEALEKYS-VGRSKPSVQRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 593 DDHQLWETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645 >gi|224531788|ref|ZP_03672420.1| DNA gyrase, B subunit [Borrelia valaisiana VS116] gi|224511253|gb|EEF81659.1| DNA gyrase, B subunit [Borrelia valaisiana VS116] Length = 634 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 369/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDKIDVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V + R IF Q FS+GIP S +E + GT++ F D +IF + Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEIVGESS-ITGTKVNFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKICISIEDKRFGREKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSESYYIDGFLDDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYDHLLKIINLNPLEIDNILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + + LRY KVIIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDIKKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKINYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAV----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK72] Length = 649 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 257/658 (39%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QSKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQTALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R] gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316] gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909] gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R] gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316] gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus agalactiae ATCC 13813] Length = 650 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 254/662 (38%), Positives = 381/662 (57%), Gaps = 25/662 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG Sbjct: 4 ETKNMEQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAG 63 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SG Sbjct: 64 FAGHIKVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSG 122 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V + + Q++ RG+ ++ LE + GT + F PD Sbjct: 123 GLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + FD +L K Q A+L+ ++ S +E E +++ GG+ +Y Sbjct: 182 PEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE-----YHYEGGIGSY 236 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ +I E G +VE A+ + + S+ N I T EGGTHE Sbjct: 237 VEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFANNIHTHEGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + Sbjct: 294 QGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + + F+ +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 354 SEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISN 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 414 LPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKIL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + + +RY+K++IMTDADVDGAHI +LLLT Y+ M ++E Sbjct: 474 ANEEIRSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLE 533 Query: 569 QKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 ++++ PP++ + G++ Y EE ++ L+ + G+ K + R+KGLGEM Sbjct: 534 AGYVYIAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSKPTVQRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL ET MD R + RV ++ + + LMG + + R +FI+ A + + Sbjct: 593 DDHQLWETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEANAVY-SN 647 Query: 684 VG 685 + Sbjct: 648 LD 649 >gi|159035681|ref|YP_001534934.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205] gi|157914516|gb|ABV95943.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205] Length = 648 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 241/655 (36%), Positives = 359/655 (54%), Gaps = 19/655 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 Y A SI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY + I+ Sbjct: 4 QDKQEYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGYCDTID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRG PV+ HPK K +E+ LT LHAGGKFD Y +SGGLHGVG Sbjct: 64 VVLLADGGVRVTDNGRGFPVDPHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS + V + + + Q ++ P + + + G+ ++F PDP +F Sbjct: 123 VSVVNALSTRMAVEIQKDGYFWRQSYTDSKPSPLEK--GEPTDATGSAVSFWPDPAVFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + + Q A+L+ + + ++ A++ G + F + GG+ +++ Sbjct: 181 -VDFDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIADFVRHLNA 239 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +++ I + TE+ G +VE A+ W E + ++ N I T EGGTHE G R A Sbjct: 240 SKTPIHKSVVEFGTEEDG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAA 296 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LT I +Y + K + +D+ I+SV + P+F GQTKTKL + + V Sbjct: 297 LTSVINRYGADKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + +L +NP EA ++ + ++ ++ RK+ + +PGKLAD Sbjct: 357 QRVCNEWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLAD 416 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C E+FIVEGDSAGGSAKQ R+ QA+LP+RGKILNV A +++ N ++ Sbjct: 417 CQSTDPRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQA 476 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ ALG + E LRY K+++M DADVDG HI +LLLT ++ M L+E H++L Sbjct: 477 LITALGTGIHDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLA 536 Query: 576 SPPLFRIT---QGTKSVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +PPL++I +G + YA+ + + + L + KK +I RFKGLGEM +L E Sbjct: 537 APPLYKIKWNRKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWE 596 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTL +V ++ + + LMG + R FIQ A + + Sbjct: 597 TTMNPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647 >gi|15672961|ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. lactis Il1403] gi|12723922|gb|AAK05077.1|AE006332_6 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis Il1403] Length = 644 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD S+I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I V++ Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P + L K K ++K GT++TF PD IF Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + EKEEF++ G++ ++ E+ Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + ++ G VE A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + +YA ++ ++ D +LSV I +F GQTK KL S A+ Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTVVLSVLIPEEHLQFEGQTKDKLGSPLARP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + YL++N A L+ I+ E R RK RE +R K G Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N+ Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + ++ ++F K+ + R+KGLGEM A Q Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL++V I+ + ++ LMG K + R K+I+ F Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636 >gi|291297544|ref|YP_003508822.1| DNA gyrase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290566764|gb|ADD39729.1| DNA gyrase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 656 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 235/663 (35%), Positives = 369/663 (55%), Gaps = 21/663 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + D+Y+A S+ +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAAEKKQDDYNAGSLTVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V++ + + V+DNGRG PV+ HPK K +E+ LT LHAGGKFD+ +Y +SGGL Sbjct: 62 DTIDVTILADNGVRVIDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDSKSYAVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + + + R +++Q + +P ++ + K GT ++F PD Sbjct: 121 HGVGISVVNALSTRIEMEIQRDGFVWTQSYKHSVPGPL--EQGEKSRKTGTSVSFWPDDT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--AEKYGIPEKEEFYFPGGLKTY 272 IF ++ + + Q A+L+ +K ++ +E+ P + F + G+ + Sbjct: 179 IFETTV-YNFETIYRRLQEYAFLNKNLKIVLRDERPRPESEEDTKPREVVFQYAEGIADF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ +S + + + + + ++E A+ W E + ++ N I T EGGTHE Sbjct: 238 VRHLNATKSPLHKSVVMFEAKSE-EDGSSLEVAMQWNESYGESVYTFANAINTHEGGTHE 296 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALT + KY + + DD+ I+SV + EP+F GQTKTKL + Sbjct: 297 EGFRAALTTCVNKYGTDRKLLKGTDRLSGDDIREGLAAIVSVKLVEPQFEGQTKTKLGNT 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + + V+ + + +NP EA ++ ++ R + R++ R+ + + + Sbjct: 357 EVKSFVQRVCNEWLVDWFDRNPSEAKTIITKASAAAQARKAAAQARKLARRKSLLETSSM 416 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC +E+F+VEGDSAGGSAKQ R+ QA+LP+RGKILNV A +KI Sbjct: 417 PGKLADCQSTDPSESEMFVVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDKILK 476 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N ++ ++ ALG + E LRY K+I+M+DADVDG HI +LLLT ++ M L+E Sbjct: 477 NNEVQAMITALGTGIHDDFDIEKLRYHKIILMSDADVDGQHINTLLLTLLFRMMRPLVEM 536 Query: 570 KHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGE 622 H+++ PPL++I +G + YA + + ++E + K + I R+KGLGE Sbjct: 537 GHVYMSQPPLYKIKWNRKGDQVEYAFSDRERDGLIEMGMSQGKPDPRKYDGIQRYKGLGE 596 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M ++L ET M+ R LL+V ++ + + LMG + R FIQ A + Sbjct: 597 MNYTELWETTMNPATRALLQVTLDD----AATADELFSVLMGEDVETRRNFIQRNAKDVR 652 Query: 683 DVG 685 + Sbjct: 653 FLD 655 >gi|326406524|gb|ADZ63595.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis CV56] Length = 644 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 245/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD S+I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I V++ Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRISVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P + L K K ++K GT++TF PD IF Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + EKEEF++ G++ ++ E+ Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVSYLNED 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + ++ G VE A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + +YA ++ ++ D +LSV I +F GQTK KL S A+ Sbjct: 292 TKAMNEYARKVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + YL++N A L+ I+ E R RK RE +R K G Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N+ Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + ++ ++F K+ + R+KGLGEM A Q Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL++V I+ + ++ LMG K + R K+I+ F Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636 >gi|85705733|ref|ZP_01036830.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217] gi|85669723|gb|EAQ24587.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217] Length = 662 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 340/667 (50%), Positives = 446/667 (66%), Gaps = 10/667 (1%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + + + + +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+ Sbjct: 2 PPNQQKKSSGMNDLLSPTPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEI 61 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDN+MDE +AG+A IEV L NG ++V DNGRGIPV+ HPK P KS LEII TL+AGG Sbjct: 62 IDNSMDEAVAGHATWIEVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGG 121 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF +Y+ SGGLHGVG SVVNALSD L V VAR ++ +FSRG+P +PL K N Sbjct: 122 KFSGDSYQTSGGLHGVGSSVVNALSDHLRVEVARNRELYMMEFSRGMPQAPLVKIGAAPN 181 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 +RGT +TF PDP+IFG ARL KM +SKAYL V+ W + E P + Sbjct: 182 RRGTSVTFHPDPEIFGS-LTLKPARLFKMARSKAYLFSGVEIRWKTEITDGE---TPTEA 237 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSY 318 F FPGGL YL L + + F G + + + G VEWAI W + I SY Sbjct: 238 TFKFPGGLADYLGETLNGATTYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSY 297 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPE 378 CNT+ T EGGTHE+G A+ +GIK Y EL+ N++A I +DL+ ++S FIREPE Sbjct: 298 CNTVPTPEGGTHEAGFWAAILKGIKAYGELSNNRKAAQITREDLLAGGCALVSCFIREPE 357 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTK +L + DA R VE A+RD FD++L + A +L++++ R+EERLRRR+++E Sbjct: 358 FVGQTKDRLATTDAARMVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKET 417 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 RKTA +KLRLPGKL DCS + GTELFIVEGDSAGGSAK R+R QA+LPLRGKILN Sbjct: 418 QRKTATKKLRLPGKLVDCSSSTREGTELFIVEGDSAGGSAKMGRDRKIQALLPLRGKILN 477 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A S K+ +NQ+I DL QALG +++ +DLRY+K+IIMTDADVDGAHIA+LL+TF Sbjct: 478 VLGAASSKLGSNQEINDLTQALGVGLGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTF 537 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 F+ +M +I+ HL+L PPL+R+TQG+K VY DE + L + GKGKI++SRFK Sbjct: 538 FFTQMRPMIDAGHLYLACPPLYRLTQGSKRVYCLDEAERDVWLAK-GLGGKGKIDVSRFK 596 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM A LKET MD R L+RV I++D T D + +LMG K + RF++I E A Sbjct: 597 GLGEMDAKDLKETTMDPRSRKLIRVTIDEDE--PGQTSDLVERLMGKKPELRFQYISENA 654 Query: 679 SFIDDVG 685 F++++ Sbjct: 655 RFVEELD 661 >gi|284165545|ref|YP_003403824.1| DNA gyrase B subunit [Haloterrigena turkmenica DSM 5511] gi|284015200|gb|ADB61151.1| DNA gyrase, B subunit [Haloterrigena turkmenica DSM 5511] Length = 644 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 17/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ + I Sbjct: 2 SQESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 VS++ +G ++V D+GRGIPV+ H ++ ++ LE+ILT LHAGGKFDN +Y++SGGLHGVG Sbjct: 62 VSINDDGSVSVADDGRGIPVDTHDEY-DRPALEVILTVLHAGGKFDNKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216 +SVVNALS+ L V R ++F F G P+ +E + + + GT+I F PD IF Sbjct: 121 VSVVNALSERLEAEVKRDGSVFRHAFEAGEPVGDMERVRDMEPDEETGTQIRFWPDTGIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F + L + A+L+ V ++E A + +E + + GG++ +++ Sbjct: 181 ES-GEFSFSTLSNRLRELAFLNSGVHITLRDEREEATEGDDLVEETYEYQGGIREFVEYL 239 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335 E RS + ++ + E++ VE A+ EE I ++ N I T EGGTH +G + Sbjct: 240 NETRSAMHDDVIYFEAEEQNIQ---VEVAMQATEELQGSIHAFANNINTREGGTHLTGFK 296 Query: 336 VALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA+ ++ +D+ ++SV +P+F GQTKTKL + + + Sbjct: 297 TALTRTVNDYAKDNDMLGDLEDNLKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVR 356 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE+++ + Y ++P A ++ +E ++ R +K E RK+A+ LPGK Sbjct: 357 GIVESSMHEGLGTYFEEHPDTAQAIVTKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 416 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC ELFI EGDSAGGSAKQARN QA+LP++GKILNV ++I N + Sbjct: 417 LADCQTKDPDEAELFIAEGDSAGGSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDE 476 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +++ A+G ++ ED+RY+K+I+ TDADVDGAHI +LLLTFFY+ M L+E ++ Sbjct: 477 IRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGYV 536 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL+RI ++ A E + +I+ E ++ RFKGLGEM QL +T Sbjct: 537 YATQPPLYRIRYRGETYDAMTEAERDEIVAEKCDGNPS--QVQRFKGLGEMNPQQLWDTT 594 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R L ++ I + LMG + R +FI++ A + + Sbjct: 595 MDPDNRILKQITIED----AAAADKMFSVLMGDAVEPRKQFIKDNAPEAEWID 643 >gi|330994149|ref|ZP_08318077.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1] gi|329758616|gb|EGG75132.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1] Length = 680 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 356/686 (51%), Positives = 469/686 (68%), Gaps = 13/686 (1%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLFS + ++ P PA ++ D YDAS+I +LEGLEPVR RPGM Sbjct: 2 NDDLFS----APASPGKPTRRKVSPPAMPADNAKNGPDTYDASAIEVLEGLEPVRRRPGM 57 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDE A HHL SE++DNAMDE +AG+A I+VSL+ LT+ DNGRGIPV+ HP+F Sbjct: 58 YIGGTDETAYHHLASEILDNAMDEAVAGHATTIDVSLEAGDCLTIRDNGRGIPVDPHPRF 117 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 P++S LE+ILTTLHAGGKF Y SGGLHGVG SVVNAL+ + V +AR ++ Q + Sbjct: 118 PDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALASRMEVEIARDRELWRQVY 177 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 RG PLS +EK V N+RGT+I F PDP+IFG F ARL ++ +SKA+L V Sbjct: 178 ERGHPLSGVEKIGPVNNRRGTQIRFTPDPEIFGRLH-FSPARLYRLCRSKAFLFRGVTIR 236 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300 WSCD + + IP + +FPGGL L+ +L +++ + ++++ G + G+ G Sbjct: 237 WSCDPSLIKGDDIPAEAVLHFPGGLADSLRDELGDKAALLTDLWAGDADLPTAPDGSDTG 296 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 +EWAIA+ E+ SYCNTI T GGTHE+G R AL +G++ + E NKRA SI + Sbjct: 297 RMEWAIAFLEQGTAALASYCNTIPTPNGGTHETGFRNALLKGLRNWGEQRANKRAASINA 356 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+M LSVFIR+P+F GQTK KL S +A + VE ALRD FDH+L NP +A LL Sbjct: 357 DDIMGCIAAKLSVFIRDPQFQGQTKEKLTSSEASKLVETALRDRFDHWLAANPPQADNLL 416 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 +V+ER+EERLRR++Q+E RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAK Sbjct: 417 AFVVERAEERLRRKEQKETPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 476 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC ++ LRY ++I Sbjct: 477 QARNRETQAVLPLRGKILNVASASTEKLRGNQELRDLVEALGCGMGERFDATKLRYGRII 536 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ LI HL+L PPL+R+TQG +S+YA D+ +++ Sbjct: 537 IMTDADVDGAHIASLLMTFFYRELPGLIRGGHLYLAQPPLYRLTQGGRSIYAMDDADRER 596 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L++ K K+E+SRFKGLGEM LK+T MD RTLL+V T + + Sbjct: 597 KLKKDFK-PNSKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVITP--PEDRALTLERV 653 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG KA+ RF+FIQ+ A +D++ Sbjct: 654 EHLMGRKAELRFRFIQDHARQVDNLD 679 >gi|290958999|ref|YP_003490181.1| DNA gyrase subunit B [Streptomyces scabiei 87.22] gi|260648525|emb|CBG71636.1| DNA gyrase subunit B [Streptomyces scabiei 87.22] Length = 681 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 384/686 (55%), Gaps = 25/686 (3%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 S ++ ++PA ++++ YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 2 ADSGNPNENILSTEAPAGVAEASATAYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 61 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT L Sbjct: 62 VQEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 120 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y +SGGLHGVG+SVVNALS + V + ++Q + G+P +PL + E Sbjct: 121 HAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEIKTDGHRWTQDYKLGVPTAPLAQHE 180 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251 ++ GT +TF DP IF + L + Q A+L+ ++ + ++E Sbjct: 181 AT-DEHGTTVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGLRINLADERESAKATAG 238 Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 ++ + +++ GG+ +++ + + + ++E A+ Sbjct: 239 ADEAGEDEKHEVKSVSYHYEGGIVDFVKYLNSRKGDVVHPTVIDLEAEDKDRSLSLELAM 298 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + S+ N I T EGGTHE G R ALT + KYA + ++ ++ DD+ Sbjct: 299 QWNSGYTEGVYSFANIIHTHEGGTHEEGFRAALTNLVNKYAREKKLLREKDDNLTGDDIR 358 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + + + V+ + + + +L +NP+EA ++ I Sbjct: 359 EGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPVEAADIVRKGI 418 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 419 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGR 478 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI NQ+I L+ A G + E LRY K+I+M Sbjct: 479 NPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 538 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+E H+FL PPL++I G + + YA+ + + ++ Sbjct: 539 DADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGREDIEYAYSDRERDALI 598 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 E ++ GK + I RFKGLGEM A +L+ T MD R L +V ++ D Sbjct: 599 EMGRQRGKRIREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQADDLF 654 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 655 SVLMGEDVEARRAFIQRNAKDVRFLD 680 >gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1058] Length = 649 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 257/658 (39%), Positives = 378/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N +I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANGEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G++ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|85716303|ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A] gi|85696819|gb|EAQ34704.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A] Length = 681 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 383/677 (56%), Positives = 488/677 (72%), Gaps = 9/677 (1%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73 SS L + + P A Y A+ I +LEGLEPVR RPGMYIGGTDEKA Sbjct: 8 NTKVKSSNDLFSASKAKGHPPARASGAETGYTAADIEVLEGLEPVRRRPGMYIGGTDEKA 67 Query: 74 LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 LHHLF+EVIDNAMDE +AG+A I V L +GFLTV DNGRGIPV+ HPKFP KS LE+I Sbjct: 68 LHHLFAEVIDNAMDEALAGHATFIVVELATDGFLTVTDNGRGIPVDPHPKFPKKSALEVI 127 Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193 + TLH+GGKFD+ YE SGGLHGVG+SVVNALS L V VAR ++ F RG P L Sbjct: 128 MCTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARSQNLYKMTFERGHPKGKL 187 Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 E ++ N+RGT I F+PD +IFG KA F RL KMT+SKAYL G V+ W C E+ + Sbjct: 188 EDLGRIANRRGTTIRFKPDTEIFGAKAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPELLK 247 Query: 254 K-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EE 311 IP + F+FPGGLK YL + +L+ +IF+GK+ + G H G EWA+AW + Sbjct: 248 GLDDIPAEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADA 306 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGIL 370 + ++SYCNT+ T +GGTHESGLR AL RG+K +AE KRA SI S+D+M+ A +L Sbjct: 307 DGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGYGKRAASITSEDVMVGAAVML 366 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SVF+REPEF GQTK +L + +A R VE A++DPFDH+L NP++A KLL++VIER++ERL Sbjct: 367 SVFVREPEFQGQTKDRLATSEASRIVEQAIKDPFDHWLSGNPVQANKLLDFVIERADERL 426 Query: 431 RRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RRR ++E +RK+A++KLRLPGKLADC+ G+ELFIVEGDSAGGSAKQAR+R QAVL Sbjct: 427 RRRAEKETSRKSAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAVL 486 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 PLRGKILNVASA +K+ N Q+ DL+QALGC T + YREEDLRY +VIIMTDADVDGAH Sbjct: 487 PLRGKILNVASATRDKVTANAQLADLIQALGCGTGTNYREEDLRYSRVIIMTDADVDGAH 546 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 IASLL+TFFY++M LI++ HL+L PPL+R+T G+K+VYA D+ K +L+ + + Sbjct: 547 IASLLITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTVYARDDADKDALLKS-EFNANA 605 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 K+++ RFKGLGEM+ +QLKET MD KRT+LRV + + +DT DS+ +LMGTKA+ R Sbjct: 606 KVDVGRFKGLGEMMPAQLKETTMDPAKRTMLRVML--LADDREDTADSVERLMGTKAEAR 663 Query: 671 FKFIQERASFI--DDVG 685 F FI ++A F D + Sbjct: 664 FAFISDKAEFASEDMLD 680 >gi|290889525|ref|ZP_06552615.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429] gi|290480723|gb|EFD89357.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429] Length = 652 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 250/656 (38%), Positives = 372/656 (56%), Gaps = 22/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 S +++Y SSI+ILEGLE VR RPGMYIG T LHHL E+IDN +DE +AG+A+ Sbjct: 11 APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + ++++ + +T+ D+GRG+PVE PK + +E + T LHAGGKFD+ +Y++SGGLHG Sbjct: 71 VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215 VG SVVNALS E+ V V R N I+ F RG + ++ ++ KRGT + F PDP I Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ ++ + + K E F + GG+ Y++ Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKN-----ESFMYEGGIAEYVKF 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N+ + E + E+ G VE A+ + + + S+ N I T EGGTHE+G Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFANNIHTHEGGTHETGF 301 Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ++ALTR I YA+ + +D+ I+S+ +P+F GQTKTKL + DA Sbjct: 302 KMALTRIINDYAKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 Q+ V + F+ ++++NP A + +I ++ + +K+ + L G Sbjct: 362 QQVVNHQFSTIFNRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +K+ N+ Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G ++ Y KVIIMTDADVDGAHI +LLLT F++ M LI+ + Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541 Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+ + G + VY +E + K + I R+KGLGEM A QL Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD R LLRV D + + + LMG + + R +FI++ A F++D+ Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651 >gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33] gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84] gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7] gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407] gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33] gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis] gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84] gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407] gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7] gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14] Length = 650 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 261/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV ++ + +TV+DNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + ++ Q++ RG ++ LE + ++ GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD A+L K Q A+L+ + + +E E+ +++ GG+ +Y++ Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I + E TVE A+ + + S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 D F +L++NP A +++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A TELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT FY+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ I G++ Y E+ Q LE G+ K I R+KGLGEM QL Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ R + RV ++ + + LMG K + R +FI+E A + Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|116511808|ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris SK11] gi|116107462|gb|ABJ72602.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris SK11] Length = 644 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 247/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD S+I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I V++ Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKITVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P + LEK K ++K GT++TF PD IF Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + EKEEF++ G++ ++ E+ Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVAYLNED 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + ++ G VE A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + +YA + ++ D +LSV I +F GQTK KL S A+ Sbjct: 292 TKAMNEYARKVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + YL++N A L+ I+ E R RK RE +R K G Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N+ Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + D Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + ++ ++F K+ + R+KGLGEM A Q Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL++V I+ + ++ LMG K + R K+I+ F Sbjct: 588 LWETTMDPETRTLIQVTIDD----AAQAEKRVSVLMGDKVEPRRKWIENNVKF 636 >gi|257051220|ref|YP_003129053.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940] gi|256689983|gb|ACV10320.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940] Length = 637 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 373/650 (57%), Gaps = 24/650 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I++LEGL+ V+ RP MYIG TD + LHHL EV+DNA+DE +AG+ + IEV++ Sbjct: 5 NAYGAGQIQVLEGLQAVQKRPAMYIGSTDTRGLHHLVYEVVDNAIDEALAGHCDHIEVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V D+GRGIP++ H ++ ++ +E+I+T LHAGGKFDN +Y++SGGLHGVG+SV Sbjct: 65 HDDGSVSVTDDGRGIPIDIHEEY-DRPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDPKIFGDK 219 VNALS +L V V+R+ ++ Q F G P L + ++ GT I F PD +IF Sbjct: 124 VNALSQKLEVEVSREGNVWKQTFDHGAPADDLTEIRSLDDPDETGTTIRFWPDEEIFET- 182 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + L + A+L+ V+ + D+E E F + GG++ +++ E Sbjct: 183 TDFQFSTLANRLRELAFLNSGVEITLADDRE-------ERAETFQYEGGIREFVEYLNET 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + + E+ + E + VE A+ E I ++ N I T EGG+H +G + AL Sbjct: 236 KDPLHDEVVYFEDEDQDIQ---VEVALQATTELQGSIHAFANNINTREGGSHLTGFKTAL 292 Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + YA I +D+ ++S+ +P+F GQTKTKL + + + V Sbjct: 293 TRVVNDYATTNDLLSDIEETLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGVV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+A+ + Y +NP A ++ +E ++ R +K E RK+A+ LPGKLAD Sbjct: 353 ESAMHENLGTYFEENPAVAQAIVRKAVEAAKARKAAQKAEELTRRKSALESTALPGKLAD 412 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C ELFI EGDSAGGSAKQARN QAVLP+RGKILNV ++I N+QI + Sbjct: 413 CQTKDPSRAELFIAEGDSAGGSAKQARNPDFQAVLPIRGKILNVEKHRLDRILENEQIRN 472 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG ++ ++LRYEK+I TDADVDGAHI +LLLTFFY+ M L+E H++ Sbjct: 473 IITALGTGVGDEFDLDELRYEKIIFATDADVDGAHIRTLLLTFFYRHMRPLLEGGHVYAA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI ++ A + + +I+EE K +I RFKGLGEM QL +T M+ Sbjct: 533 RPPLYRIRYRGETYDAMTDAERDEIIEE--KCNGNPTQIQRFKGLGEMNPQQLWDTTMNP 590 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L R+ I+ + LMG + R +FI+E + + V Sbjct: 591 ENRFLKRITIDD----AAAADKMFSVLMGDAVEPRKQFIKEHSPEAEWVD 636 >gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK330] Length = 649 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 257/658 (39%), Positives = 378/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIVS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E +++ PP++ + G+ Y EE Q L + G+ K I R+KGLGE Sbjct: 532 EAGFVYIAQPPIYGVKVGSDVKEYIQPGANQEEELQAALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|94497614|ref|ZP_01304183.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58] gi|94423031|gb|EAT08063.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58] Length = 658 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 351/657 (53%), Positives = 461/657 (70%), Gaps = 10/657 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A+ S +YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A Sbjct: 7 AASPVPSTDYDASTIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+L+ LT+ DNGRGIPV+ HPKFPN+S LE+ILTTLH+GGKF+ Y SGGL Sbjct: 67 TRIEVTLEPGNRLTITDNGRGIPVDPHPKFPNQSALEVILTTLHSGGKFEGKAYATSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS V VAR +F Q FS+G+P PLEK N+RGT + F PD Sbjct: 127 HGVGISVVNALSTSTVVEVARNKELFRQSFSQGLPQGPLEKVGGAPNRRGTSVAFTPDTA 186 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG+ F ARL ++ +SKAYL V+ W C E+ PE F FPGGL +L+ Sbjct: 187 IFGE-QKFKPARLYRLARSKAYLFAGVEIRWKCAPELISDDTPPEAV-FQFPGGLADHLK 244 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333 ++ +R +S F+G + G G VEWA+AW + + YCNTI T +GGTHE+G Sbjct: 245 EQVGDRECATSVFFSGNQDFPGDA-GRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEAG 303 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LR AL +GI+ + +L K+A I +DD+M S+ +LSVFIR+P+F QTK +L S DA Sbjct: 304 LRAALVKGIRAFGDLVGQKKAKDITADDIMTSSEIMLSVFIRDPQFQSQTKDRLTSPDAA 363 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 R VENA+RD FDHYL + LL +V++R +ERLRR++++EV RKTA RKLRLPG Sbjct: 364 RLVENAVRDHFDHYLTDHMDRGKALLAYVLDRMDERLRRKQEKEVKRKTATNSRKLRLPG 423 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS + G E+F+VEGDSAGGSAKQAR+R QA+LPLRGKILNVASA + KI NQ Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKIFANQ 483 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I D++ ALGC R ++LRYE+V+IMTDADVDGAHIA+LL+TFF+QEM +L+ + H Sbjct: 484 EIGDMILALGCGIRKDCNPDNLRYERVVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+T G KS+YA D+ H++++L K+ K+++SRFKGLGEM QL+ET Sbjct: 544 LYLAQPPLYRLTAGGKSLYAKDDAHREQLLA--KEFKGKKVDVSRFKGLGEMNPMQLRET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686 MD R+L+R+ + D+ + +D +++LMGT RF FIQE A+ +D+ + Sbjct: 602 TMDPKTRSLIRITLPDDVEDRQQVRDLVDRLMGTNPAHRFAFIQENAAAVDEEAIDA 658 >gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591] gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3] gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591] gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3] Length = 650 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 262/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV ++ + +TV+DNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + ++ Q++ RG ++ LE + ++ GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD A+L K Q A+L+ + + +E E+ +++ GG+ +Y++ Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 EN+ +I + E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 D F +L++NP A +++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A TELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDATKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT FY+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ I G++ Y E+ Q LE G+ K I R+KGLGEM QL Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ R + RV ++ + + LMG K + R +FI+E A + Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|294508443|ref|YP_003572501.1| DNA gyrase subunit B [Salinibacter ruber M8] gi|294344771|emb|CBH25549.1| DNA gyrase subunit B [Salinibacter ruber M8] Length = 698 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 262/654 (40%), Positives = 375/654 (57%), Gaps = 23/654 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y AS+I++LEGLE VR RP MYIG + LHHL EV+DN++DE +AG+ + I V + Sbjct: 59 SDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCDEIGVEI 118 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +++ DNGRGIPV+ HP ++S LE+++T LHAGGKFD +Y++SGGLHGVG+SV Sbjct: 119 YEDGSVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQVSGGLHGVGVSV 177 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDK 219 VNAL+ VTV R +++ Q + G+P P+ + + + GTRI F PD IF Sbjct: 178 VNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRIRFWPDGDIFKT- 236 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + A+L+ V+ +E E +E ++ G+ ++ E Sbjct: 237 TEFRFETLSDRLRELAFLNAGVRIRVEDHREEDEGLA---RETYHSEEGIIGFVDYLDEA 293 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 R I E E G VE A+ + +E + S+ N I T EGGTH +G R AL Sbjct: 294 RDSILDETIYI-AETDG--EVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTGFRRAL 350 Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +K+YA+ + DD +LSV + EP+F GQTKTKL + D Q V Sbjct: 351 TRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSDVQGIV 410 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+ + +L +P +A +++E VI+ +E R RK RE V RK A LPGKLAD Sbjct: 411 ESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLPGKLAD 470 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS EL++VEGDSAGGSAKQAR+R QA+LPLRGKILNV A ++I + QI + Sbjct: 471 CSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEHDQIQN 530 Query: 516 LVQALG---CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 +V ALG T ++ ++RY K+++MTDADVDGAHI SLLLTFFY+++ LIE+ ++ Sbjct: 531 IVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNI 590 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI G++ +Y +E Q + E + G + R+KGLGEM QL T Sbjct: 591 YIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNS-PSMQRYKGLGEMNPEQLWTTT 649 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R + +V I + LMG + R +FI+ A + + Sbjct: 650 MNPETRKIQQVTIQD----AAAADRLFSTLMGDSVEPRREFIERNAKYAT-IDA 698 >gi|289579993|ref|YP_003478459.1| DNA gyrase subunit beta [Natrialba magadii ATCC 43099] gi|289529546|gb|ADD03897.1| DNA gyrase, B subunit [Natrialba magadii ATCC 43099] Length = 643 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 367/653 (56%), Gaps = 18/653 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ + I Sbjct: 2 SQESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDEIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 VS++ + ++V D+GRGIPV+ H ++ ++ LE+ILT LHAGGKFDN +Y++SGGLHGVG Sbjct: 62 VSINEDDSISVADDGRGIPVDTHEEY-DRPALEVILTVLHAGGKFDNKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIF 216 +SVVNALS L TV R ++ F G P+ +E + + + GT I F PD IF Sbjct: 121 VSVVNALSSRLETTVKRDGGVYEHAFEIGEPIGDMERVRDMEPDEETGTEIQFWPDDDIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + L + A+L+ V+ ++E E E + + GG++ +++ Sbjct: 181 ET-TDMSFSTLSNRLRELAFLNSGVRITLRDERERTEDG-EAVAETYEYEGGIREFVEYL 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLR 335 E RS + +I + E + VE A+ E I ++ N I T EGGTH +G + Sbjct: 239 NETRSAMHEDIIYFEDEDQNV---RVEVAMQATQELQGSIHAFANNINTREGGTHLTGFK 295 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y I ++ +D+ ++SV +P+F GQTKTKL + + + Sbjct: 296 TALTRVVNDYGNENNLLSDIEENLKGEDIREGLTAVVSVKHPDPQFEGQTKTKLGNSEVR 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE A+ D Y ++P A ++ +E ++ R +K E RK+A+ LPGK Sbjct: 356 GIVEGAMHDCLGTYFEEHPDTAQAIVMKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC ELFI EGDSAGGSAKQARN QAVLP++GKILNV ++I N + Sbjct: 416 LADCQTKDPEEAELFIAEGDSAGGSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +++ A+G ++ ED+RY+K+I+ TDADVDGAHI +L+LTFFY+ M L+E ++ Sbjct: 476 IRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYV 535 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL+RI ++ A + + +I+EE ++ RFKGLGEM QL ET Sbjct: 536 YATQPPLYRIRYRGETYDAMTDVERDEIVEEKCDGNPS--QVQRFKGLGEMNPEQLWETT 593 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R L ++ + + LMG + R +FI+E A + + Sbjct: 594 MNPENRILKQITVED----AAAADKMFSVLMGDAVEPRKQFIKENAPEAEWID 642 >gi|187934052|ref|YP_001884271.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B] gi|187722205|gb|ACD23426.1| DNA gyrase, B subunit [Clostridium botulinum B str. Eklund 17B] Length = 635 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 256/651 (39%), Positives = 380/651 (58%), Gaps = 21/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YD + I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 2 EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVYEIVDNSIDEALAGYCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV ++ + +T D+GRG+PV HPK S +E+I+T LHAGGKF Y++SGGLHGV Sbjct: 62 EVKINKDNSITSSDDGRGMPVGMHPKMHK-SAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS++ VTV R+ I+ Q++S+G L L++ GT I F+PD +IF Sbjct: 121 GASVVNALSEQCIVTVKREGHIWKQEYSKGKVLYDLKQIGNTEE-SGTTIYFKPDAEIFD 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L + + A+L+ + + E E +Y+ GG+K+++ Sbjct: 180 EVL-FDFDTLSQRLRELAFLNKGINIKLIDSRNDRE-------ENYYYEGGIKSFVSYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 N++ + E + K TVE + + + E + N I T EGGTH G + Sbjct: 232 RNKTPLHPEPIYVEGIKDKV---TVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKT 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR YA+ + + DD+ ++SV I +P+F GQTKTKL + + + Sbjct: 289 ALTRAFNDYAKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKG 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ + + +L +NP + +++ + + R RK RE+ RK+ + + LPGKLA Sbjct: 349 IVDSIVSEYIGIFLEENPGISKIIIDKALMAARAREAARKARELTRKSVLERTTLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS E++IVEGDSAGGSAKQ R+R QA+LPLRGKI+NV +KI N++ I Sbjct: 409 DCSSKDPRECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIR 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +V A G + E +RY ++IIMTDADVDGAHI +LLLTFFY+ M +L+EQ H+++ Sbjct: 469 SMVTAFGGGIGKDFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYI 528 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPLFR+ +G K VYA+ + ++L + ++I R+KGLGEM A+QL +T MD Sbjct: 529 AQPPLFRVGKGKKEVYAYSDSELDQVLLDMGGKDTS-VDIQRYKGLGEMNATQLWDTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+ EI + + LMG K + R +FI++ A + ++ Sbjct: 588 PAKRILLKAEIEDAM----AADEIFTILMGEKVEPRREFIEQNAKNVVNLD 634 >gi|91976956|ref|YP_569615.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5] gi|91683412|gb|ABE39714.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5] Length = 684 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 387/683 (56%), Positives = 497/683 (72%), Gaps = 9/683 (1%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + +S G P A A Y A+ I +LEGLEPVR RPGMYIG Sbjct: 5 LKPSSKSKSAGDLFGAAPKSAAPRPAAKPTGGAEAGYTAADIEVLEGLEPVRRRPGMYIG 64 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 GTDEKALHHLF+EVIDN+MDE +AG+A IEV L +GFLTV DNGRGIPV+ HPKFP K Sbjct: 65 GTDEKALHHLFAEVIDNSMDEALAGHATFIEVELTTDGFLTVSDNGRGIPVDPHPKFPKK 124 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S LE+I+ TLHAGGKFD+ YE SGGLHGVG+SVVNALS L V VAR ++ F+RG Sbjct: 125 SALEVIMCTLHAGGKFDSKVYETSGGLHGVGVSVVNALSSLLEVEVARGQQLYRMVFARG 184 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 IP LE K+ N+RGTR+ F+PD IFG KA F RL KM +SKAYL G V+ W C Sbjct: 185 IPQGKLESLGKINNRRGTRVRFKPDADIFGAKAAFKPQRLFKMARSKAYLFGGVEIRWKC 244 Query: 248 DKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 D E+ + +P ++ F+FPGGLK YL + +L+ +IF+GK+ + G H G EWA+ Sbjct: 245 DPELLKGLEDVPAEDTFHFPGGLKDYLGAAIHADTLVHPDIFSGKSGRNGAH-GACEWAV 303 Query: 307 AWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364 AW + + ++SYCNT+ T +GGTHESG+R AL RG+K +AE KRA SI S+D+M+ Sbjct: 304 AWTADADGFLSSYCNTVPTPDGGTHESGMRSALLRGLKDHAERVGQGKRASSITSEDVMV 363 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 A +LSVF+REPEF GQTK +L + +AQR VE A++DPFDH+L NP++A KLL++V+E Sbjct: 364 GAAVMLSVFVREPEFQGQTKDRLATAEAQRIVEQAIKDPFDHWLSGNPVQANKLLDFVVE 423 Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+EERLRRR+++E++RKTA++KLRLPGKLADC+ A G+ELFIVEGDSAGGSAKQAR+R Sbjct: 424 RAEERLRRRQEKEISRKTAVKKLRLPGKLADCTNTAAEGSELFIVEGDSAGGSAKQARDR 483 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QAVLPLRGKILNVASA +K+ N Q+ DL+QA+GC T YREEDLRY ++IIMTDA Sbjct: 484 KTQAVLPLRGKILNVASATKDKVVANAQLSDLMQAIGCGTGVNYREEDLRYARIIIMTDA 543 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHIASLL+TFFY++M LI++ HL+L PPL+R+T G K+VYA D+ HK ++L++ Sbjct: 544 DVDGAHIASLLITFFYRQMPKLIDEGHLYLAVPPLYRLTHGAKTVYARDDAHKAELLKK- 602 Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664 + + K+++ RFKGLGEM+ +QLKET MD KRTLLRV + D + T DS+ +LMG Sbjct: 603 EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAKRTLLRVVLLPD--DREGTADSVERLMG 660 Query: 665 TKADERFKFIQERASFIDD--VG 685 TKA+ RF FI ++A F + + Sbjct: 661 TKAEARFAFISDKAEFASEDLLD 683 >gi|294499300|ref|YP_003563000.1| DNA topoisomerase IV subunit B [Bacillus megaterium QM B1551] gi|294349237|gb|ADE69566.1| DNA topoisomerase IV, subunit B [Bacillus megaterium QM B1551] Length = 658 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD + LHHL E++DN++DE +AGY I V++ Sbjct: 8 NYNEDAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGYGEEIIVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G P++ LEK K + GT I F+PD IF Sbjct: 126 NALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTKK-TGTTIHFKPDATIFSTTV- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L K + + F++ G++ ++ E + Sbjct: 184 YNYDTLCERLRESAFLLKGFKIELIDKRH-------DRHDIFHYETGIQAFVSYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +F H VE+A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 SLHPVVFFEGIH----HNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ +V Sbjct: 293 AFNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP ++ L++ I+ ++ R RK RE R RK L GKL Sbjct: 353 DAVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 413 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + +D+ Y+K++IMTDAD DGAHI LLLTFFY+ M L+E +F Sbjct: 473 STIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K V Y+ +E Q +++ + I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR----GYMIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I+ + LMG K + R K+I+ +F Sbjct: 589 ETTMNPETRTLIRVRIDD----AARADRRVTTLMGDKVEPRRKWIESNVAF 635 >gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius] Length = 648 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 259/654 (39%), Positives = 382/654 (58%), Gaps = 24/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A Sbjct: 5 TKEMQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLH Sbjct: 65 HIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS +L V V + I Q++ RG ++ L+ + ++ GT + F PDP+I Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGTTVHFTPDPEI 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD +L K Q A+L+ ++ + +E E + +++++ GG+ +Y+Q Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKDYHYEGGIASYVQY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 EN+ +I E TVE AI + + S+ N I T EGGTHE G Sbjct: 238 INENKDVIFENPIYTDGEMDDI---TVEVAIQYTTGYHETVMSFANNIHTHEGGTHEQGF 294 Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 295 RTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPG Sbjct: 355 VKITNRLFSEAFSDFLLENPAVAKKIIEKGILASKARIAAKRAREVTRKKSGLEISNLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS N H TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N+ Sbjct: 415 KLADCSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E + Sbjct: 475 EIRSLFTAMGTGFGADFDVNKTRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGY 534 Query: 572 LFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PP++ + G++ Y EE Q LE + G+ K I R+KGLGEM Sbjct: 535 VYIAQPPIYGVKVGSEVKEYIQPGVNQEEELQLALERYS-EGRSKPSIQRYKGLGEMDDH 593 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 594 QLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|302864517|ref|YP_003833154.1| DNA gyrase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315500827|ref|YP_004079714.1| DNA gyrase, b subunit [Micromonospora sp. L5] gi|302567376|gb|ADL43578.1| DNA gyrase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315407446|gb|ADU05563.1| DNA gyrase, B subunit [Micromonospora sp. L5] Length = 648 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 236/652 (36%), Positives = 358/652 (54%), Gaps = 19/652 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ + I+V L Sbjct: 7 KKYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTIDVVL 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRG PV+ HPK K +E+ LT LHAGGKFD Y +SGGLHGVG+SV Sbjct: 67 LADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS + V + + ++ Q++ P + + ++ G+ ++F PDP +F Sbjct: 126 VNALSTRMAVEIHKDGFVWRQQYHHSKPTPLEK--GEATDRTGSAVSFWPDPDVFET-VD 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD + + Q A+L+ + ++ ++ G + F++ GG+ +++ ++S Sbjct: 183 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKS 242 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G +VE A+ W E + ++ N I T EGGTHE G R ALT Sbjct: 243 PIHKTVVEFGAEETG---MSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTS 299 Query: 341 GIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + +Y + + +D+ I+SV + +P+F GQTKTKL + + V+ Sbjct: 300 VVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRV 359 Query: 400 LRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 + + +NP EA +++ ++ ++ RK+ + +PGKLADC Sbjct: 360 CNESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQS 419 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +E+FIVEGDSAGGSAKQ R+ QA+LP+RGKILNV A +++ N ++ L+ Sbjct: 420 TDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALIT 479 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + E LRY K+++M DADVDG HI +LLLT ++ M L+E H++L +PP Sbjct: 480 ALGTGIHDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPP 539 Query: 579 LFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L++I K + YA+ + + + L + KK +I RFKGLGEM +L ET M Sbjct: 540 LYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNARPDDIQRFKGLGEMNYPELWETTM 599 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTL +V ++ + + LMG + R FIQ A + + Sbjct: 600 NPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647 >gi|182678200|ref|YP_001832346.1| DNA topoisomerase IV subunit B [Beijerinckia indica subsp. indica ATCC 9039] gi|182634083|gb|ACB94857.1| DNA topoisomerase IV, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 691 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 385/687 (56%), Positives = 507/687 (73%), Gaps = 13/687 (1%) Query: 7 DLFSTLPPQ------SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 DLF T + +G+ + K + Y A+SI +LEGLEPVR Sbjct: 6 DLFGTSARKAAPRGADKGADKSADKGTPKTPRALPSGTPGEAGYTAASIEVLEGLEPVRR 65 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDE ALHHLF+EV+DNAMDE +AG+A I+V+ + GF+TV+DNGRGIPV+ Sbjct: 66 RPGMYIGGTDETALHHLFAEVLDNAMDEAVAGHATFIDVTCETGGFVTVIDNGRGIPVDP 125 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ Y+ SGGLHGVG+SVVNAL++ L V VAR ++ Sbjct: 126 HPKFPKKSALEVIMTTLHAGGKFDSGAYQTSGGLHGVGVSVVNALAEVLEVEVARGQILY 185 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q F+RG+P S L++ KV+N+RG+++ F+PDP+IFG++A ARL KM+++KA+L Sbjct: 186 RQTFARGLPTSKLQEVGKVQNRRGSKVRFKPDPQIFGEQAHLKPARLFKMSRAKAFLFKG 245 Query: 241 VKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + +P++ +FPGGLK YL +E +SL++ +IF G+ EK+G H Sbjct: 246 VEIRWHCAPSLLPHDGSVPQEAVLHFPGGLKDYLTQDIEGKSLVTEQIFAGRIEKEGGH- 304 Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWAIAW +++ + S+CNTI T +GGTHE+GLR AL RG+K +AE KRA + Sbjct: 305 GSLEWAIAWLADDDGFVHSFCNTIPTPDGGTHEAGLRGALLRGLKDHAERIGQTKRASIL 364 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 ++D+M+S +LSVFIREPEF GQ K++L++ +A R VE LRD FDH+L +P A K Sbjct: 365 TNEDVMVSTAALLSVFIREPEFQGQNKSRLMTTEASRLVEGPLRDAFDHWLAASPSHAAK 424 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+W +ER+EERLRRR +++V RKTA RKLRLPGKLADC+ + G+E+FIVEGDSAGGS Sbjct: 425 LLDWSVERAEERLRRRAEKDVARKTATRKLRLPGKLADCTNTASQGSEIFIVEGDSAGGS 484 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R+NQAVLPLRGKILNVASA +K+ NQQ+ DL+QALGC T S YR +DLRYEK Sbjct: 485 AKQARDRANQAVLPLRGKILNVASATRDKLTANQQLADLIQALGCGTGSHYRHDDLRYEK 544 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHIASLL+TFFY++M L+E HL+L PPL+R+TQG+K VYA +E H+ Sbjct: 545 IIIMTDADVDGAHIASLLITFFYRQMPKLVEGGHLYLAVPPLYRLTQGSKQVYARNEAHR 604 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 I+++ + GKGKIEISRFKGLGEM+ASQLKET MD KR LLRV + ++T D Sbjct: 605 DAIIKK-ELTGKGKIEISRFKGLGEMMASQLKETTMDPAKRNLLRVVV--LAEDREETSD 661 Query: 658 SINKLMGTKADERFKFIQERASFIDDV 684 S+ +LMG + + RF FIQE A+F D+ Sbjct: 662 SVERLMGNRPEARFAFIQEHAAFAGDL 688 >gi|228998349|ref|ZP_04157941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17] gi|229005832|ref|ZP_04163527.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4] gi|228755412|gb|EEM04762.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4] gi|228761394|gb|EEM10348.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17] Length = 654 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + + GT + F+PDP IF Sbjct: 125 NALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKITIRDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + + + +V Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|6647532|sp|Q9ZFK1|GYRB_BORHE RecName: Full=DNA gyrase subunit B gi|3859564|gb|AAC72846.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317666|gb|AAT99954.1| DNA gyrase subunit B [Borrelia hermsii DAH] gi|51317668|gb|AAT99955.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317670|gb|AAT99956.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317672|gb|AAT99957.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317674|gb|AAT99958.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317676|gb|AAT99959.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317678|gb|AAT99960.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317680|gb|AAT99961.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317682|gb|AAT99962.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317684|gb|AAT99963.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317686|gb|AAT99964.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317688|gb|AAT99965.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317690|gb|AAT99966.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317692|gb|AAT99967.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317694|gb|AAT99968.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317696|gb|AAT99969.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317698|gb|AAT99970.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317700|gb|AAT99971.1| DNA gyrase subunit B [Borrelia hermsii] gi|112031373|gb|ABH88159.1| GyrB [Borrelia hermsii] gi|112031377|gb|ABH88161.1| GyrB [Borrelia hermsii] Length = 634 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R +F Q +SRGIP S ++ V + RGT++TF D +IF + Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + EK+ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I +E + + V + W E + S+ N I T EGGTH +G + + Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K S+ DD ++S+ I EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R +QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE H+++ PP Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + Y +D+ K+ L + + K+ + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + ++IN + + LMG + R +FI++ A + ++ Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|28412562|gb|AAO39047.1| coumermycin-resistant GyrB [synthetic construct] Length = 634 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 368/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKFD TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFDKDTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNIDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ + Sbjct: 179 NFDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSK-----FYFEGGIKSFVDYLTNDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSEPYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +L I+ + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY K+IIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I + Y ++E+ K+K L+ + + I + R+KGLGEM +QL ET MD +R Sbjct: 531 LYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLMNIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|187918301|ref|YP_001883864.1| DNA gyrase subunit B [Borrelia hermsii DAH] gi|119861149|gb|AAX16944.1| DNA gyrase subunit B [Borrelia hermsii DAH] Length = 639 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 67 SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R +F Q +SRGIP S ++ V + RGT++TF D +IF + Sbjct: 126 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + EK+ FYF GG+K ++ N Sbjct: 184 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I +E + + V + W E + S+ N I T EGGTH +G + + Sbjct: 239 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K S+ DD ++S+ I EP+F GQTK KL + ++ VE Sbjct: 296 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 356 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R +QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE H+++ PP Sbjct: 476 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + Y +D+ K+ L + + K+ + R+KGLGEM +QL ET M+ R Sbjct: 536 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + ++IN + + LMG + R +FI++ A + ++ Sbjct: 596 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638 >gi|302552701|ref|ZP_07305043.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] gi|302470319|gb|EFL33412.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] Length = 690 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 256/686 (37%), Positives = 375/686 (54%), Gaps = 25/686 (3%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 S + + + A SA+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 11 DSGNPNENNPSVEAMAGVAEASATASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 70 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT L Sbjct: 71 VYEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 129 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q++ G+P +PL K E Sbjct: 130 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQEYKMGVPTAPLAKHE 189 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251 GT +TF D IF + L + Q A+L+ + + ++E Sbjct: 190 ATEE-TGTSVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVTG 247 Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 A++ + +++ GG+ +++ + + ++E A+ Sbjct: 248 ADEAGADEKAEVKAVTYHYEGGIVDFVKYLNSRKGEAVHPTVIDLEAEDRDKHLSLEIAM 307 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + S+ N I T EGGTHE G R ALT I KYA + ++ ++ DD+ Sbjct: 308 QWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIR 367 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + +A+ V+ + + +L +NP EA ++ I Sbjct: 368 EGLTAIISVKLSEPQFEGQTKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAVDIIRKGI 427 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 428 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPDKCEIFIVEGDSAGGSAKSGR 487 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI NQ+I L+ A G + E LRY K+I+M Sbjct: 488 NPQYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 547 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + ++ Sbjct: 548 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDFEYAYSDRERDALI 607 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 E + GK + RFKGLGEM A +L+ T MD R L +V ++ D Sbjct: 608 EMGRNAGKRIKDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQADDLF 663 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 664 SVLMGEDVEARRAFIQRNAKDVRFLD 689 >gi|269217830|ref|ZP_06161684.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212765|gb|EEZ79105.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 693 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 251/698 (35%), Positives = 366/698 (52%), Gaps = 38/698 (5%) Query: 19 SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78 ++++ P+ + S YDASSI +LEGLE VR RPGMYIG T E+ LHH Sbjct: 2 TTDETSADNAAPEEESVVKVSKGQAYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHCV 61 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 EV+DN++DE +AG + IEV++ +G L V DNGRGIPV HP +K +E+++T LH Sbjct: 62 YEVVDNSVDEALAGICDHIEVTILADGGLRVRDNGRGIPVNEHP-TEHKPAVEVVMTILH 120 Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198 AGGKF N Y +SGGLHGVG+SVVNALS + V R ++ F G+P PLE+ + Sbjct: 121 AGGKFGNGGYAVSGGLHGVGVSVVNALSTRMETEVRRDGYVWRISFENGVPTGPLER-GE 179 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------- 249 ++ GT TF +P IF +D L + Q A+L+ ++ + ++ Sbjct: 180 QTDEHGTTQTFWANPDIFETTH-YDFETLRRRFQQMAFLNKDLRITLTDERPTATPEGDE 238 Query: 250 ---EIAEKYGIP--EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKKG-----T 297 E E P + + GGL Y++ + ++ ++ + E + Sbjct: 239 VVGETGEGSPTPGYRSVSYMYSGGLLDYVKHLNTTKKVEVVHPDVVYFEAEDRERQIQCE 298 Query: 298 HRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 E A+ W E ++ NTI T EGGTHE G R ALT I KYA + Sbjct: 299 VAMQCEVAMQWTSAYSETLNTFANTINTTEGGTHEEGFRSALTSVINKYARDKGLLKDKD 358 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 ++ DD+ I+SV + P+F GQTKTKL + +A+ V+ + +L +P E Sbjct: 359 PNLSGDDIREGLTAIISVKLGNPQFEGQTKTKLGNTEARTFVQQQVYSHLTDWLDMHPNE 418 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A ++ ++ R RK RE R+ + + +PGKL DC+ E+FIVEGDS Sbjct: 419 AKDIIRKALQAFAARAAARKAREATRRKSVLESASMPGKLKDCTSRNPEECEIFIVEGDS 478 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSA R+ +QA++P+RGKILNV A ++ ++ I L+ A G ++ L Sbjct: 479 AGGSAVNGRDPEHQAIMPIRGKILNVEKARLDRALSSDTIQGLITAFGTGIGDEFDMAKL 538 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAH 592 RY K++ M DADVDG+HIA+LLLT Y+ M LIE H++L PPL+RI Y Sbjct: 539 RYHKIVFMADADVDGSHIATLLLTLVYRYMRPLIEGGHVYLAMPPLYRIKWTNAVHDYVF 598 Query: 593 DEEHKQKILEEFKKHG-----KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647 + + + L E K G + I R+KGLGEM A +L +T M+ RTL +V I+ Sbjct: 599 SDRERDEKLVEGKDKGFRLPREESQRIQRYKGLGEMNAEELWDTTMNPEARTLKQVSIDD 658 Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T ++ + LMG + R FIQ A + + Sbjct: 659 ----AAATDETFSILMGEDVESRRGFIQRNAHDVRFLD 692 >gi|256786618|ref|ZP_05525049.1| DNA gyrase subunit B [Streptomyces lividans TK24] gi|289770511|ref|ZP_06529889.1| DNA gyrase, B subunit [Streptomyces lividans TK24] gi|289700710|gb|EFD68139.1| DNA gyrase, B subunit [Streptomyces lividans TK24] Length = 694 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 250/691 (36%), Positives = 375/691 (54%), Gaps = 25/691 (3%) Query: 13 PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72 + + D+ + ++ AS +YDAS+I +LEGL+ VR RPGMYIG T E+ Sbjct: 10 ADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGER 69 Query: 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132 LHHL EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E+ Sbjct: 70 GLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEV 128 Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192 +LT LHAGGKF Y +SGGLHGVG+SVVNALS + V V ++Q++ G+P + Sbjct: 129 VLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTAS 188 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI- 251 L + E GT +TF D IF + L + Q A+L+ +K + ++E Sbjct: 189 LARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERESA 246 Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 ++ + +++ GG+ ++ + + + + Sbjct: 247 KATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLS 306 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISII 358 +E A+ W + S+ N I T EGGTHE G R ALT I KYA + ++ ++ Sbjct: 307 LEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLT 366 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD+ I+SV + EP+F GQTKTKL + + + V+ + + +L +NP EA + Sbjct: 367 GDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADI 426 Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + I+ + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGS Sbjct: 427 IRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGS 486 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AK RN QA+LP+RGKILNV A ++I NQ+I ++ A G + E LRY K Sbjct: 487 AKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYHK 546 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596 +I+M DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + Sbjct: 547 IILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRE 606 Query: 597 KQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++E ++ GK + + RFKGLGEM A +L+ T MD R L +V ++ Sbjct: 607 RDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQ 662 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + LMG + R FIQ A + + Sbjct: 663 ADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 693 >gi|326803543|ref|YP_004321361.1| DNA topoisomerase IV, B subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650531|gb|AEA00714.1| DNA topoisomerase IV, B subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 691 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 364/656 (55%), Gaps = 32/656 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +++ YD SSI+ILEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + Sbjct: 2 AKNSKATYDESSIQILEGLEAVRKRPGMYIGSTDNRGLHHLVYEIVDNSIDEALAGYCDE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + +TV DNGRG+P+ H K T+E+ILT LHAGGKF S Y+ SGGLHG Sbjct: 62 ISVTIHEDNSVTVTDNGRGMPIGKH--SSGKPTVEVILTVLHAGGKFSESAYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L VTV R N + Q FS+G + + GT I F PDPKIF Sbjct: 120 VGSSVVNALSDSLEVTVYRDNKKYYQSFSQGGKPHKPKLTSHKSKQTGTSIHFHPDPKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F++ + + + KA+L+ + ++ +K +E F++ GL ++ Sbjct: 180 GA-TEFNSDTIKEQLREKAFLTKGLAIHFTDEK-------TDSQESFHYEDGLVEFIHYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 EN+ ++ + +K + +E A + + I S+ N + T +GGTHE+ L+ Sbjct: 232 NENKEVLQGVTYI--EDKDKSSNIEMELAFQYNDGYSETILSFVNNVRTPDGGTHETALK 289 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 +T+ +YA + ++ D+ ++SV I E +F GQTK KL + Sbjct: 290 TGMTKAFNEYARKVNLIKPKEKNLEGSDVREGFTAVISVRIPEEILQFEGQTKGKLGTPQ 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448 A+ VEN + YL++N A L+ I+ + R RK RE +R + K + Sbjct: 350 ARLAVENMVNTHLSIYLLENGEIAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETL 409 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL ELF+VEGDSAGGSAK R+R QA+LPLRGK+LN A I Sbjct: 410 LSGKLTPAQSKNTKKNELFLVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDIL 469 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N+++ ++ +G ++ D Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 470 KNEELNTIIHTVGAGVGPEFDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIE 529 Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL+++++G K YA +E + ++F K + R+KGLGEM Sbjct: 530 AGKVYIAMPPLYKLSRGKGKNEKIAYAWTDEELAQETKKFGK----GYTLQRYKGLGEMN 585 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL +T M+ RTL+RV ++ L + ++ LMG K + R +I++ F Sbjct: 586 ADQLWDTTMNPETRTLIRVTLDD----LSQAEKRVSVLMGNKVEPRRDWIEDNVQF 637 >gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus] Length = 688 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 240/688 (34%), Positives = 354/688 (51%), Gaps = 23/688 (3%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69 + P S ++ + G + A A +Y A I +LEGLEPVR RPGMYIG T Sbjct: 11 AATAPLSTNAAASDPRGGP---AAAQAPSRVDGDYGADQITVLEGLEPVRKRPGMYIGST 67 Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 K LHHL EV+DNA+DE +AGY + + V+L+ +G TV DNGRGIP + HP+ KS Sbjct: 68 GPKGLHHLVFEVVDNAIDEALAGYCDTVYVTLEEDGSCTVRDNGRGIPCDIHPR-TKKSA 126 Query: 130 LEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 LE +LT LHAGGKF Y++SGGLHGVG+SVVNALS V V R S F RG Sbjct: 127 LETVLTVLHAGGKFGGDESGYKVSGGLHGVGVSVVNALSQWAEVEVVRGGKRHSLSFERG 186 Query: 188 IPLSP-LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 GT + F PDP+IF F+ RL AYL+ V + Sbjct: 187 KTQGDLFTADAGAEEAGGTAVRFLPDPEIFKTTTEFEFERLSGRMDELAYLNAGVSIVMA 246 Query: 247 CDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK--TEKKGTHRGTVE 303 + + E + E + GG++ +++ + + + ++ + E+ G Sbjct: 247 DARSGVDEDGNFKKTETYLHKGGVQEFVELMCKEKQHLHPDMKVIRALGERDGVQVEAC- 305 Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361 + + + S+ N I T +GGTH GL+ +TR + + + ++ D Sbjct: 306 LSWSSDMYTDSLVSFANGIRTGDGGTHLEGLKSIVTRTVNSMGRKSGKLKDSQSNLGGDF 365 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + ++SV + EPEF GQTK +L + + + V++ + + +P +L+ Sbjct: 366 VREGLTAVVSVKVPEPEFEGQTKNRLGNPEVRGIVDSIVGEELVKLFEWHPKILGAILDK 425 Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + R++ R+ + + LPGKLADC+ +E++IVEGDSA GSAKQ Sbjct: 426 ASSAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPVESEIYIVEGDSAAGSAKQ 485 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVI 539 R+R QA+LPLRGKILN+ SE+I N ++ L+ ALG + + LRY +++ Sbjct: 486 GRDRRTQAILPLRGKILNIEKCASERIYQNNELQALISALGLGIKGNEFDASSLRYHRIV 545 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 +MTDADVDG+HI LLLTFF++ LIE +F+ PPL++I QG Y + +E Sbjct: 546 VMTDADVDGSHIRILLLTFFFRYQRSLIENGFVFIACPPLYKIKQGKTEKYVYTQEECDS 605 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + E +++ RFKGLGEM+ QL +T MD +RTL V + Sbjct: 606 AVSELPAS--PAVQLQRFKGLGEMMPQQLWDTTMDPARRTLKLVTVED----AAAADRIF 659 Query: 660 NKLMGTKADERFKFIQERASF--IDDVG 685 + LMG R +FI E A+ +DD+ Sbjct: 660 SVLMGDNVGPRKEFINEHANNLKLDDLD 687 >gi|297200945|ref|ZP_06918342.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] gi|297147775|gb|EDY60918.2| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] Length = 690 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 252/686 (36%), Positives = 381/686 (55%), Gaps = 25/686 (3%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 S + +N + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 11 DSGNPNENIPSTDVEATSSNGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 70 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV P K +E++LT L Sbjct: 71 VQEVVDNSVDEALAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVL 129 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y +SGGLHGVG+SVVNALS ++ V + ++Q + G+P +PL + E Sbjct: 130 HAGGKFGGGGYAVSGGLHGVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAPLAQHE 189 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI------ 251 ++ GT +TF DP IF + L + Q A+L+ ++ + ++E Sbjct: 190 AT-DEHGTTVTFWADPDIFET-TEYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAG 247 Query: 252 -----AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 ++ + +++ GG+ +++ + + + ++E A+ Sbjct: 248 ADEAGEDEKHEVKTVSYHYEGGIVDFVKYLNSRKGEVVHPTVIDLEAEDKDKSLSLELAM 307 Query: 307 AWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W E + S+ N I T EGGTHE G R ALT I KYA + ++ ++ DD+ Sbjct: 308 QWNGGYSEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIR 367 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + + + V+ + + +L +NP+EA ++ I Sbjct: 368 EGLTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPVEAADIIRKSI 427 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 428 QAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 487 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI NQ+I L+ A G + E LRY K+I+M Sbjct: 488 NPEYQAILPIRGKILNVEKARIDKILQNQEIQALISAFGTGVHEDFDIEKLRYHKIILMA 547 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI++LLLTF ++ M L+E H++L PPL++I G + YA+ + + ++ Sbjct: 548 DADVDGQHISTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALI 607 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 E ++ GK + I RFKGLGEM A +L+ T MD R L +V ++ D Sbjct: 608 EMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLF 663 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FIQ A + + Sbjct: 664 SVLMGEDVEARRQFIQRNAKDVRFLD 689 >gi|238061919|ref|ZP_04606628.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149] gi|237883730|gb|EEP72558.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149] Length = 648 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 238/655 (36%), Positives = 359/655 (54%), Gaps = 19/655 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 Y A SI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ + I+ Sbjct: 4 QDKQEYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRG PV+ HPK K +E+ LT LHAGGKFD Y +SGGLHGVG Sbjct: 64 VVLLADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS + V + + ++ Q+++ P + + ++ G+ +TF PD +F Sbjct: 123 VSVVNALSTRMAVEIHKSGFVWRQQYANSKPSPLEK--GEATDRTGSAVTFWPDADVFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + + Q A+L+ + ++ + G P + F + GG+ +++ Sbjct: 181 VN-FDFQTIYRRLQEMAFLNRGLTIHLLDERVSEGEEGKPREVTFCYKGGIADFVRHLNA 239 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +++ I + E++G +VE A+ W E + ++ NTI T EGGTHE G R A Sbjct: 240 SKNPIHKTVVEFGAEEEG---MSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAA 296 Query: 338 LTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LT + +Y + + + +D+ I+SV + P+F GQTKTKL + + V Sbjct: 297 LTSVVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + + + +NP EA ++ + ++ ++ RK+ + +PGKLAD Sbjct: 357 QRVCNEWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLAD 416 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +E+FIVEGDSAGGSAKQ R+ QA+LP+RGKILNV A +++ N ++ Sbjct: 417 CQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQA 476 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ ALG + E LRY KV++M DADVDG HI +LLLT ++ M L+E H++L Sbjct: 477 LITALGTGIHDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLA 536 Query: 576 SPPLFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +PPL++I K + YA+ + + + L + KK +I RFKGLGEM +L E Sbjct: 537 APPLYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWE 596 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTL +V ++ + + LMG + R FIQ A + + Sbjct: 597 TTMNPATRTLRQVTLDD----AAVADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647 >gi|253576486|ref|ZP_04853815.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844123|gb|EES72142.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 661 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 246/669 (36%), Positives = 355/669 (53%), Gaps = 41/669 (6%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D P S YDA I++LEGL VR RPGMYIG T LHHL E++DNA+DE + Sbjct: 10 DVPGTNADGPSSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 69 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 A Y I+++L+ +G +TV+DNGRGIP H T +++ T LHAGGKF + Y+ Sbjct: 70 AKYCTKIDITLNKDGSVTVLDNGRGIPTGMHK--TGIPTPQVVYTILHAGGKFGGAGYKK 127 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200 SGGLHGVG SV NALS+ L V + R I +F G P++ LE Sbjct: 128 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRMRFEYWVDEKGIEHVGEPVTGLEIIGNTN 187 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT++TF+PD ++F G + L + Q A+L+ +K ++ Sbjct: 188 K-TGTKVTFKPDIRVFSGGIGLNYDTLAERLQEIAFLNSGLKVTLKDER-------AGRS 239 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319 +EF++ GG +++ + + ++ I E+ VE A+ + E S+ Sbjct: 240 DEFFYEGGASQFVEFLNDGKDVLHDVIHFY-AERDDI---EVEVALQYNAGYTETLVSFV 295 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N+I T GGTHE+G + A TR + +YA ++ ++ +DL + ++SV + E Sbjct: 296 NSIPTRGGGTHETGFKTAYTRVMNEYARKNGMLKEKDKNLEGNDLREGMMAVISVKMSEV 355 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 EF GQTK +L S A+ VE+ + + +L +NP A L++ I+ S+ R RK R+ Sbjct: 356 EFVGQTKDQLGSASARSAVESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREAARKARD 415 Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 R L GKL TELFIVEGDSAGGSAKQ R+ QA+LPL+GK Sbjct: 416 EMRSGKKRSESSNLGGKLTPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGK 475 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 +N A I N + ++ A+G ++ ED + K+IIMTDAD DGAHI LL Sbjct: 476 PMNPEKAKLADILKNDEYRAIISAIGAGIGPEFALEDSNFSKIIIMTDADTDGAHIQVLL 535 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQ--GT--KSVYAHDEEHKQKILEEFKKHGKGK 611 LTFFY+ M LI+ +++ PPL++IT+ G YA +E Q L+EF K+ Sbjct: 536 LTFFYRYMKPLIDAGRVYIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFGKN---- 591 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 E+ R+KGLGEM QL ET M+ RT+L+V+I + ++ LMG K D R Sbjct: 592 FELQRYKGLGEMNPEQLWETTMNPETRTMLQVQIED----AAKAERRVSTLMGDKVDPRK 647 Query: 672 KFIQERASF 680 ++I E F Sbjct: 648 RWIVENVDF 656 >gi|229086165|ref|ZP_04218383.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44] gi|228697145|gb|EEL49912.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44] Length = 654 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 364/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++VVD GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVVDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ Q+F G +P++ LEK K + + GT + F+PDP IF Sbjct: 125 NALSEWLVVTIKRDGNVYEQRFENGGVPVTTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKITIKDERNDLE-------DVFHYETGIEAFVAYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFAGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSMLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP AT L++ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|116668574|ref|YP_829507.1| DNA gyrase subunit B [Arthrobacter sp. FB24] gi|116608683|gb|ABK01407.1| DNA gyrase subunit B [Arthrobacter sp. FB24] Length = 696 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 251/712 (35%), Positives = 369/712 (51%), Gaps = 44/712 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M +D+ D+ + P + PD+PA A + Y AS I +LEGLE VR Sbjct: 1 MANDNADIPAVEP---------AAEDARTPDAPAEAAER--KGYGASDITVLEGLEAVRK 49 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL EV+DN++DE +AGY IE+ L +G + VVD+GRGIPV+ Sbjct: 50 RPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYCTHIEIVLQADGGVKVVDDGRGIPVDM 109 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP +K T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V RQ ++ Sbjct: 110 HP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVDTEVRRQGHVW 168 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 F+ G K + ++ GT TF PD IF FD L Q A+L+ Sbjct: 169 RMSFADGGKPQGSLVKGEETDQTGTTQTFYPDASIFES-TEFDFETLRARFQQMAFLNKG 227 Query: 241 VKTCWSCDKEIA------------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ++ + ++ A E + + GL Y++ + + Sbjct: 228 LRITLTDERREALESSEDGDLDLDNVPTEGEVAAEYRTVVYQYDDGLLDYVKHLNSGKKV 287 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 E + + +E A+ W + +Y NTI T EGGTHE G R A+T Sbjct: 288 DVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANTINTHEGGTHEEGFRAAMTS 347 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + + + V+ Sbjct: 348 LINRYAREKNIIKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGNSEVKGFVQR 407 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + D +L +NP A ++ I ++ R+ RK R+ R+ + + +PGKL+DCS Sbjct: 408 VVTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRKSPLESFGMPGKLSDCS 467 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK+ RN QA+LPLRGKILNV A +K N ++ ++ Sbjct: 468 SKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILNVERARLDKALGNNEVQSMI 527 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + LRY K+++M DADVDG HI +LL+T ++ M LIE +++L P Sbjct: 528 TAFGTGIGEDFDLAKLRYHKIVLMADADVDGQHITTLLMTLLFRYMRPLIENGYVYLAQP 587 Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAM 633 PL+RI Y + + + L + G+ + I R+KGLGEM ++L +T M Sbjct: 588 PLYRIKWSNAPHDYVYSDRERDARLLAGQAAGRRIPKDNGIQRYKGLGEMDYTELWDTTM 647 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + RTLL+V ++ L LMG + R FIQ+ A + + Sbjct: 648 DPDHRTLLQVTMDDAL----AADQIFTVLMGEDVESRRNFIQQNAKDVRFLD 695 >gi|290792686|gb|ADD63785.1| DNA gyrase subunit B [Borrelia hermsii] gi|290792694|gb|ADD63789.1| DNA gyrase subunit B [Borrelia hermsii] Length = 634 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 366/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSVTVNDNGRGIPTDVHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R +F Q +SRGIP S ++ V + RGT++TF D +IF + Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADSEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + EK FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDRRSGKEKLLE-----FYFEGGIKAFVDYITNNSKN 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I +E + + V + W E + S+ N I T EGGTH +G + + Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K S+ DD ++S+ I EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R +QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPADREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE H+++ PP Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + Y +D+ K+ L + + K+ + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + ++IN + + LMG + R +FI++ A + ++ Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 633 >gi|7437457|pir||T10969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Streptomyces coelicolor gi|436027|gb|AAA65215.1| DNA gyrase [Streptomyces coelicolor A3(2)] gi|1093584|prf||2104262D DNA gyrase Length = 686 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 250/691 (36%), Positives = 375/691 (54%), Gaps = 25/691 (3%) Query: 13 PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72 + + D+ + ++ AS +YDAS+I +LEGL+ VR RPGMYIG T E+ Sbjct: 2 ADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGER 61 Query: 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132 LHHL EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E+ Sbjct: 62 GLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEV 120 Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192 +LT LHAGGKF Y +SGGLHGVG+SVVNALS + V V ++Q++ G+P + Sbjct: 121 VLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTAS 180 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI- 251 L + E GT +TF D IF + L + Q A+L+ +K + ++E Sbjct: 181 LARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERESA 238 Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 ++ + +++ GG+ ++ + + + + Sbjct: 239 KATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLS 298 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISII 358 +E A+ W + S+ N I T EGGTHE G R ALT I KYA + ++ ++ Sbjct: 299 LEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLT 358 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD+ I+SV + EP+F GQTKTKL + + + V+ + + +L +NP EA + Sbjct: 359 GDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADI 418 Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + I+ + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGS Sbjct: 419 IRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGS 478 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AK RN QA+LP+RGKILNV A ++I NQ+I ++ A G + E LRY K Sbjct: 479 AKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYHK 538 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596 +I+M DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + Sbjct: 539 IILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRE 598 Query: 597 KQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++E ++ GK + + RFKGLGEM A +L+ T MD R L +V ++ Sbjct: 599 RDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AAQ 654 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + LMG + R FIQ A + + Sbjct: 655 ADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685 >gi|227494193|ref|ZP_03924509.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831927|gb|EEH64310.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 671 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 251/676 (37%), Positives = 364/676 (53%), Gaps = 29/676 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +A Sbjct: 2 AEEQTAGTDTSSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GY + IEV++ +G +TVVDNGRGIPV+ HP K T+E+++T LHAGGKF Y +S Sbjct: 62 GYCDHIEVTIREDGAVTVVDNGRGIPVDIHP-TEGKPTVEVVMTILHAGGKFGGGGYAVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + + RQ ++ Q F G + + + GT TF P Sbjct: 121 GGLHGVGISVVNALSKRVDTEIRRQGYVWRQSFGNGGKPLTELVRGEETEETGTSQTFYP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------------GI 257 DP+IF F L K Q A+L+ ++ + ++ A + Sbjct: 181 DPEIFET-VEFSFETLRKRFQQMAFLNKGLRISLTDERATAVDDGDEIAGEDTDENAVKV 239 Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEIT 316 P + + GL Y++ + + E +VE A+ W + + Sbjct: 240 PLTVTYQYDQGLYDYVKFINSTKKSETIHDDIIAFEHDAEA-LSVEIAMQWTKAYSESVF 298 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFI 374 +Y NTI T EGGTHE G R ALT I KYA + ++ DD+ ++SV + Sbjct: 299 TYANTISTTEGGTHEEGFRAALTSVINKYAREKGILKDKHDNLSGDDIREGLTAVISVKL 358 Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 EP+F GQTKTKL + +A+ V+ + F +L +P EA ++ + E RL RK Sbjct: 359 TEPQFEGQTKTKLGNTEARTFVQQQVYSQFGDWLDSHPAEAKAVIIKALSAQEARLAARK 418 Query: 435 QREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493 RE R+ + +PGKL DCS A E++IVEGDSAGGSA R+ +QA+LPLR Sbjct: 419 AREATRRKGVLESASMPGKLRDCSSRDAAKCEIYIVEGDSAGGSAVMGRDPEHQAILPLR 478 Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553 GKILNV A ++ ++Q+I L+ A G ++ LRY K+++M DADVDG HI + Sbjct: 479 GKILNVEKARLDRALDSQEIRALISAFGTGIGDEFDISKLRYGKIVLMADADVDGQHITT 538 Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKGKI 612 LL+T ++ M ++E H++L PPL+R+ + + + + + L + K G+ Sbjct: 539 LLMTLLFRYMRPIVEAGHVYLAQPPLYRLKWTNAQHEFVYSDAERDAALAKGKAEGRRLP 598 Query: 613 E---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 + + R+KGLGEM A +L ET MD +KRTL ++EI + + LMG + Sbjct: 599 KEGGVQRYKGLGEMNAQELWETTMDPSKRTLKKIEI----AEAATADEIFSILMGDDVES 654 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 655 RRSFIQRNAQDVRFLD 670 >gi|92117840|ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14] gi|91800734|gb|ABE63109.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14] Length = 683 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 377/676 (55%), Positives = 485/676 (71%), Gaps = 9/676 (1%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 S+ + + G + A +Y A+ I +LEGLEPVR RPGMYIGGTDEKAL Sbjct: 11 PSKDLFDASEAKGRPTARDSSRASGAEADYTAADIEVLEGLEPVRRRPGMYIGGTDEKAL 70 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134 HHLF+EVIDNAMDE +AG+A I V L +GFLTV DNGRGIPV+ HPKFP KS LE+I+ Sbjct: 71 HHLFAEVIDNAMDEALAGHATFIVVELAADGFLTVTDNGRGIPVDPHPKFPKKSALEVIM 130 Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 TLH+GGKFD+ YE SGGLHGVG+SVVNALS L V VAR ++ F RG P L+ Sbjct: 131 CTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSRLEVEVARSQNLYKMTFERGHPRGSLD 190 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 ++ N+RGT I F+PD IFG KA F RL KMT+SKAYL G V+ W C ++ + Sbjct: 191 DLGRISNRRGTTIRFKPDTDIFGPKAAFKPQRLFKMTRSKAYLFGGVEIRWRCAPDLLKG 250 Query: 255 -YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EEN 312 IP + F+FPGGLK YL + +L+ +IF+GK+ + G H G EWA+AW + + Sbjct: 251 LDDIPAEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGKSGRNGAH-GACEWAVAWTADAD 309 Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILS 371 ++SYCNT+ T +GGTHESGLR AL RG+K +AE K A S+ S+DLM+ A +LS Sbjct: 310 GFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKHAASVTSEDLMVGAAAMLS 369 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 VF+REPEF GQTK +L + +A R VE A++DPFDH+L NP++A KLL++VIER++ERLR Sbjct: 370 VFVREPEFQGQTKDRLATSEASRIVEQAIKDPFDHWLSGNPVQANKLLDFVIERADERLR 429 Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RR ++E +RK+A++KLRLPGKLADC+ G+ELFIVEGDSAGGSAKQAR+R QAVLP Sbjct: 430 RRAEKETSRKSAVKKLRLPGKLADCTNTATDGSELFIVEGDSAGGSAKQARDRKTQAVLP 489 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 LRGKILNVASA +K+ N Q+ DL+QALGC T + YREEDLRY +VIIMTDADVDGAHI Sbjct: 490 LRGKILNVASATRDKVTANAQLSDLIQALGCGTGTNYREEDLRYSRVIIMTDADVDGAHI 549 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611 ASLL+TFFY++M LI++ HL+L PPL+R+T G+K+VYA D+ HK +L+ + + K Sbjct: 550 ASLLITFFYRQMRPLIDEGHLYLAVPPLYRLTHGSKTVYARDDAHKDALLKS-EFNANAK 608 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 +++ RFKGLGEM+ +QLKET MD +RT+LRV + T DS+ +LMGTKA+ RF Sbjct: 609 VDVGRFKGLGEMMPAQLKETTMDPARRTMLRVVL--LAEDRDGTADSVERLMGTKAEARF 666 Query: 672 KFIQERASFIDD--VG 685 FI E+A F + + Sbjct: 667 AFISEKAEFASEDLLD 682 >gi|170747435|ref|YP_001753695.1| DNA topoisomerase IV subunit B [Methylobacterium radiotolerans JCM 2831] gi|170653957|gb|ACB23012.1| DNA topoisomerase IV, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 686 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 390/694 (56%), Positives = 498/694 (71%), Gaps = 18/694 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAF----ANQSASDNYDASSIRILEGLE 56 M+D + DLF P +G++ + + D+ A A Y AS I +LEGLE Sbjct: 1 MSDPARDLFG---PGGKGAAARPPEPRRRLDASASVATLAAAEPEGGYTASDIEVLEGLE 57 Query: 57 PVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGI 116 PVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV L+ +G L V DNGRGI Sbjct: 58 PVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEVELEESGALVVTDNGRGI 117 Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176 PV+ HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGISVVNALSD L V VAR Sbjct: 118 PVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGISVVNALSDLLEVEVARN 177 Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236 T++ Q FSRG LE +V+N+RGTR+ F PD +IFG FD RL KM +SKAY Sbjct: 178 QTLYRQTFSRGHAQGALELVGRVQNRRGTRVRFHPDAQIFGS-LKFDPRRLFKMARSKAY 236 Query: 237 LSGRVKTCWSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK 295 L G V+ W C + E +P + FP GL+ YL ++ + L++ +F+GK K Sbjct: 237 LFGGVEIRWRCAPALLEGLADVPAEAVHRFPDGLRDYLARDIDGKELVTEAMFSGKITKP 296 Query: 296 GTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KR 353 G+H G++EWA+AW E+ SYCNTI T EGGTHE+GLRVAL RG++++AE KR Sbjct: 297 GSH-GSLEWAVAWMVAEDGFSHSYCNTIPTPEGGTHEAGLRVALLRGLREHAERVNQAKR 355 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ +DD+M + +LSVFIREPEF GQTK KL +++AQR VE A+RD FDH+L +P Sbjct: 356 MTAVTTDDVMATCASMLSVFIREPEFQGQTKDKLATVEAQRIVETAVRDAFDHWLAASPA 415 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 +A KLL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADCS G+E+FIVEGDS Sbjct: 416 QANKLLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADCSAAGTAGSEIFIVEGDS 475 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAKQAR+R+ QA+LPLRGKILNVASA +K+ NQ I DL ALGC T + +RE DL Sbjct: 476 AGGSAKQARDRATQAILPLRGKILNVASASRDKLGANQLISDLTLALGCGTGTAFRETDL 535 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RYEKVIIMTDADVDGAHIASLL+TFFY++M LI++ HL+L PPL+R+ QG+K YA D Sbjct: 536 RYEKVIIMTDADVDGAHIASLLITFFYRQMPKLIDRGHLYLAIPPLYRLQQGSKVAYARD 595 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + +++I++ K G K+EI RFKGLGEM+ +QLKET MD KRTLLRV + + + Sbjct: 596 DADRERIVKTVFKGG--KVEIGRFKGLGEMMPAQLKETTMDPKKRTLLRVAVLD--EARE 651 Query: 654 DTQDSINKLMGTKADERFKFIQERASFID--DVG 685 T D++ +LMG K + RF FI ERA+F + D+ Sbjct: 652 STGDTVERLMGNKPEARFAFISERAAFAEGADLD 685 >gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311] gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066] gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9] gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311] gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066] gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9] gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03] Length = 650 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 259/651 (39%), Positives = 378/651 (58%), Gaps = 22/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q++ RG+ + L + GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETEEH-GTTVHFIPDPEIFQ 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD +L K Q A+L+ ++ +E E +++ +++ GG+ +Y++ Sbjct: 187 ETTEFDFGKLAKRFQELAFLNKGLRISIIDKREGLE-----QEKHYHYEGGITSYVKYIN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I E E G +VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFDEPIYTYGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + ++ ++ DD+ I+SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNNPEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G S++ RY K++IMTDADVDGAHI +LLLT Y+ M+ ++E +++ Sbjct: 479 RSLFTAMGTGFGSEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMHPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PP++ + G++ Y D+E K + E G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R L RV ++ + + LMG K + R +FI+E A + Sbjct: 599 ETTMDPENRLLARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1] gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1] Length = 640 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 258/656 (39%), Positives = 372/656 (56%), Gaps = 22/656 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ Sbjct: 1 MEENKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSARGLHHLVWEIVDNSIDEALAGFC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I+V L+ + V+DNGRG+P H K KST+E ILT LHAGGKF Y++SGGL Sbjct: 61 NEIKVILEKGDIVKVIDNGRGMPTGKHAK-TGKSTVETILTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS+ L V V R+ I+ Q+F +G +P+ L+ + GT ++F+ DP Sbjct: 120 HGVGASVVNALSEWLEVHVHREGHIYYQRFEKGGVPVGDLKIIGDCDD-TGTIVSFKADP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + +D L + + A+L+ +K + K +++ GG+K Y+ Sbjct: 179 LIFNETTIYDYDTLNQRIRELAFLNKGLKLILEDHRNEPYKKNE-----YHYEGGIKEYV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 N++ I EI + E VE + + + S+CN I T EGGTHE Sbjct: 234 AYLNRNKTAIHEEIIYVEDEIDDI---KVEVGMQYNDGYQPNIYSFCNNINTHEGGTHEE 290 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R+ALTR I YA+ K S+ DD I+SV +P++ GQTKTKL + Sbjct: 291 GFRLALTRVINNYAKNNNFLKKDDESLNGDDCREGLTAIISVKHPDPQYEGQTKTKLGNS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRL 449 + ++ N + + D +L++NP A+ ++ I S R+ ++ RE+ RKTA+ + L Sbjct: 351 EVRKIASNIISEALDKFLLENPDTASIIMNKAIVASHARMAAKRAREMTRRKTALDSIAL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS E+FIVEGDSAGGSAK R+R QA+LPLRGKILNV A ++I Sbjct: 411 PGKLADCSSKDPSECEVFIVEGDSAGGSAKMGRDRRTQAILPLRGKILNVEKARLDRILG 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I ++ A G ++ LRY K++IMTDADVDG HI L+LTF Y+ + LIE+ Sbjct: 471 NAEIRSMITAFGTGIGDEFDISKLRYHKIVIMTDADVDGGHIRILMLTFLYRFLKPLIEE 530 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+ + G + Y + + +K+ E+ + K I R+KGLGEM A QL Sbjct: 531 GFVYAAQPPLYLLKHGKEEHYLYSDYELEKLKEDLGPN--AKYNIQRYKGLGEMNAEQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD R L +++++ + + LMG K + R +FIQE A + + Sbjct: 589 ETTMDPENRLLWQIDLDDAM----QADAMFDTLMGEKVEPRREFIQEHAQEAE-LD 639 >gi|295704654|ref|YP_003597729.1| DNA topoisomerase IV subunit B [Bacillus megaterium DSM 319] gi|294802313|gb|ADF39379.1| DNA topoisomerase IV, subunit B [Bacillus megaterium DSM 319] Length = 658 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 244/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD + LHHL E++DN++DE +AGY I V++ Sbjct: 8 NYNEDAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGYGEEIIVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G P++ LEK K + GT I F+PD IF Sbjct: 126 NALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTKK-TGTTIHFKPDATIFSTTV- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L K + + FY+ G++ ++ E + Sbjct: 184 YNYDTLCERLRESAFLLKGFKIELIDKRH-------DRHDIFYYETGIQAFVSYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +F H VE+A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 SLHPVVFFEGIH----HNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ +V Sbjct: 293 AFNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP ++ L++ I+ ++ R RK RE R RK L GKL Sbjct: 353 DAVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 413 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + +D+ Y+K++IMTDAD DGAHI LLLTFFY+ M L+E +F Sbjct: 473 STIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K V Y+ +E Q +++ + I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR----GYMIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I+ + LMG K + R K+I+ +F Sbjct: 589 ETTMNPETRTLIRVRIDD----AARADRRVTTLMGDKVEPRRKWIESNVAF 635 >gi|125624342|ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|124493150|emb|CAL98114.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|300071126|gb|ADJ60526.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris NZ9000] Length = 644 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 247/653 (37%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NYD S+I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I V++ Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNKITVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 NADGSLSVEDEGRGMPVGKH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P + LEK K ++K GT++TF PD IF Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + EKEEF++ G++ ++ E+ Sbjct: 184 -EFKYNIISERLNESAFLLKEVTISLEDKR-------TDEKEEFHYENGVQDFVAYLNED 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + ++ G VE A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 236 KDSLTPVL-YFEGKQDG---FEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAI 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + +YA + ++ D +LSV I +F GQTK KL S A+ Sbjct: 292 TKAMNEYARKVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + YL++N A L+ I+ E R RK RE +R K G Sbjct: 352 VVDSLVSEKLSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSG 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N+ Sbjct: 412 KLTPAQTKNPNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNE 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + D Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 472 EINTMIYTIGAGVGADFTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGH 531 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + ++ ++F K+ + R+KGLGEM A Q Sbjct: 532 VYIALPPLYKMSEGKGKKEKIEYAWTDGELAELRKQFGKNA----NLQRYKGLGEMNADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL++V I+ + + ++ LMG K + R K+I+ F Sbjct: 588 LWETTMDPETRTLIQVTIDD----VAQAEKRVSVLMGDKVEPRRKWIENNVKF 636 >gi|239628764|ref|ZP_04671795.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518910|gb|EEQ58776.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 736 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 275/692 (39%), Positives = 378/692 (54%), Gaps = 23/692 (3%) Query: 10 STLPPQSQGSSEKLKKSGE---IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYI 66 + P S S +G + + S +Y A+ I+ILEGLE VR RP MYI Sbjct: 51 AGSPDCSDAGSPDCGDAGSFGYGDAGSPGCSTAGSPDYGAAQIQILEGLEAVRKRPSMYI 110 Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T + LHH+ E++DNA+DE +AGY IEV L+ + +TV DNGRGIP K Sbjct: 111 GNTSAQGLHHMVYEIVDNAVDEALAGYCTEIEVYLNPDNSVTVHDNGRGIPAGIQSK-TG 169 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 S ++++ T LHAGGKFDNS+Y++SGGLHGVG SVVNALS L V V + + Q + R Sbjct: 170 LSAIQVVFTVLHAGGKFDNSSYKVSGGLHGVGASVVNALSSRLKVKVDQDGYSYVQSYER 229 Query: 187 GIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 GIPL P+ + ++ GT +TF PD +IF D F L + Q A+L + Sbjct: 230 GIPLGPVRVQGTCSSQEHGTTVTFWPDGEIFKDCH-FHPETLRQHMQETAFLMSGLTITL 288 Query: 246 SCDKEIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 E ++ P+ F + GLK +++ + +I G++ GT E Sbjct: 289 YDHSESRDQDNHPDAPVWRFCYQDGLKDFVKFINGPEPTLYQDILYGQS---GTDEVLAE 345 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SD 360 +A+ E S+ N I T EGGTH +G R ALTR I YA + + Sbjct: 346 FALIHNTGFDEKLRSFANNISTPEGGTHVTGFRQALTRAINDYARKQGMLKESDPSISRE 405 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 +L ++SV ++EP+F GQTK +L S A+ +++ + +L QNP+ A ++ Sbjct: 406 ELSEGMTAVISVRLKEPQFEGQTKQRLGSSSARPVMDHLVYTKLTLFLEQNPLAAKAIIN 465 Query: 421 WVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 + + R R RE+ R KTA+ L LPGKLADCS ELFIVEGDSAGGSAK Sbjct: 466 KAVLAKKARAAARSAREMARRKTALSGLSLPGKLADCSSRNPKDCELFIVEGDSAGGSAK 525 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 AR R NQAVLPLRGKILNV +K+ N +I ++ A G + + LRY K+I Sbjct: 526 MARCRENQAVLPLRGKILNVEKTTLDKVCANAEIKAMISAFGTGIMDGFSLDGLRYHKII 585 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 +MTDADVDGAHI +LLLTF ++ M LIE H++L PPLFR+ +G K YA+ + + Sbjct: 586 LMTDADVDGAHITTLLLTFLFRFMPRLIEAGHVYLAQPPLFRVEKGKKLWYAYSDSELSQ 645 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN------SLK 653 ILE+ + G +I R+KGLGEM A QL ET MD ++RTLLRV + S Sbjct: 646 ILEDIGRDGN--YKIQRYKGLGEMDAKQLWETTMDPSRRTLLRVGAADSHDTFGQDSSES 703 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T LMG + R +I E A + + Sbjct: 704 ETSRIFRILMGDDVEPRKNYILEHAQYTTMLD 735 >gi|116329807|ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123496|gb|ABJ74767.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 641 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 386/653 (59%), Gaps = 19/653 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y AS I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQKETSYSASQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +S+ N + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ I++QK+ +GIP+SP+E K RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + AE + E F F GG+ ++++ Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 475 RILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S YA+ ++ K+++L+ G K+ I R+KGLGEM QL ET Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|316934362|ref|YP_004109344.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris DX-1] gi|315602076|gb|ADU44611.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris DX-1] Length = 682 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 386/651 (59%), Positives = 489/651 (75%), Gaps = 9/651 (1%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A D Y A+ I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A IEV Sbjct: 35 AEDGYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEV 94 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +GFLTV DNGRGIPV+ HPKFP KS LE+I+ TLHAGGKFD+ YE SGGLHGVG+ Sbjct: 95 ELAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGLHGVGV 154 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L V VAR + F RG P LE KV N+RGTR+ F+PD +IFG K Sbjct: 155 SVVNALSSRLEVEVARNQQLSRMVFERGHPKGKLESLGKVNNRRGTRVRFKPDTEIFGAK 214 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLE 278 A F RL KM +SKAYL G VK W CD E+ + +P ++EF+FPGGLK +L + Sbjct: 215 AAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDFLGAAIH 274 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 N +L+ +IF GK + G H G EWA+AW + + ++SYCNT+ T +GGTHESGLR A Sbjct: 275 NDTLVHPDIFAGKAGRNGAH-GACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSA 333 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L RG+K +AE KRA SI S+D+M+ A +LSVF+REPEF GQTK +L + +AQ+ V Sbjct: 334 LLRGLKDHAERAGQGKRASSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATAEAQKIV 393 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 E A++DPFDH+L NP++A KLL++V+ER+EERLRRR+++E++RKTA++KLRLPGKLADC Sbjct: 394 EQAIKDPFDHWLSGNPVQANKLLDFVVERAEERLRRRQEKEISRKTAVKKLRLPGKLADC 453 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + A G+ELFIVEGDSAGGSAKQAR+R QAVLPLRGKILNVASAG +K+ N Q+ DL Sbjct: 454 TSTAAEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKVVANAQLSDL 513 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +QALG T YREEDLRY ++IIMTDADVDGAHIASLL+TFFY++M LI++ HL+L Sbjct: 514 IQALGAGTGVNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYLAV 573 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+R+T G K+VYA D+ HK+++L++ + + K+++ RFKGLGEM+ +QLKET MD Sbjct: 574 PPLYRLTHGAKTVYARDDAHKEELLKK-EFNANAKVDVGRFKGLGEMMPTQLKETTMDPA 632 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685 KRTLLRV + D T +S+ +LMGTKA+ RF FI E+A F + + Sbjct: 633 KRTLLRVVLLADDRDG--TANSVERLMGTKAEARFAFISEKAEFASEEMLD 681 >gi|116490131|ref|YP_809655.1| DNA gyrase subunit B [Oenococcus oeni PSU-1] gi|116090856|gb|ABJ56010.1| DNA gyrase subunit B [Oenococcus oeni PSU-1] Length = 652 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 250/656 (38%), Positives = 372/656 (56%), Gaps = 22/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 S +++Y SSI+ILEGLE VR RPGMYIG T LHHL E+IDN +DE +AG+A+ Sbjct: 11 APSDNNSYGGSSIQILEGLEAVRKRPGMYIGSTASSGLHHLVWEIIDNGIDEALAGFAHH 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + ++++ + +T+ D+GRG+PVE PK + +E + T LHAGGKFD+ +Y++SGGLHG Sbjct: 71 VTLTIEKDNSITITDDGRGVPVEIQPK-TGRPAMEAVFTILHAGGKFDSKSYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKI 215 VG SVVNALS E+ V V R N I+ F RG + ++ ++ KRGT + F PDP I Sbjct: 130 VGASVVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDI 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + FD L + A+L+ ++ + + K E F + GG+ Y++ Sbjct: 190 FRETIVFDYRTLASRIRELAFLNKGLRLSTTDKRVDPVKN-----ESFMYEGGIAEYVKF 244 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N+ + E + E+ G VE A+ + + + S+ N I T EGGTHE+G Sbjct: 245 LNKNKQPLFPEPVYVEGEENGIQ---VEVALQYTDAVAETLMSFTNNIHTHEGGTHETGF 301 Query: 335 RVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ++ALTR I YA+ + +D+ I+S+ +P+F GQTKTKL + DA Sbjct: 302 KMALTRIINDYAKKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDA 361 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPG 451 Q+ V + F+ ++++NP A + +I ++ + +K+ + L G Sbjct: 362 QQVVNHQFSTIFNRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +K+ N+ Sbjct: 422 KLADNTSRDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANE 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L A+G ++ Y KVIIMTDADVDGAHI +LLLT F++ M LI+ + Sbjct: 482 EIRSLFTAMGTGFGEEFDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGY 541 Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+ + G + VY +E + K + I R+KGLGEM A QL Sbjct: 542 IYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPKPR--IQRYKGLGEMDAVQLW 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD R LLRV D + + + LMG + + R +FI++ A F++D+ Sbjct: 600 DTTMDPKHRRLLRV----DPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVEDLD 651 >gi|203284344|ref|YP_002222084.1| DNA gyrase, subunit B [Borrelia duttonii Ly] gi|201083787|gb|ACH93378.1| DNA gyrase, subunit B [Borrelia duttonii Ly] Length = 639 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 239/647 (36%), Positives = 366/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL E++DN++DE +AG+ + IEV ++ Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEIVDNSIDEALAGFCDRIEVVIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + V DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVG+SVV Sbjct: 67 SDNSIMVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R+ +F Q +SRGIP S +E V + GT++TF D +IF + Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSSTTGTKVTFFADSEIFETL-KY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + + A+L+ +++ + EK+ FYF GG+K ++ N Sbjct: 184 DFETLSRRLRELAFLNDKIRISIEDRRLGEEKFLE-----FYFEGGIKAFVDYITNNNKN 238 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I S + + ++W + + S+ N I T EGGTH +G + L + Sbjct: 239 IQSSPYFIEGVCNDVIVSVGLKWTEGYSDN---TLSFVNNINTKEGGTHVAGFKSGLLKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 296 MSEAFRDSKISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + +N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 356 VYDGLLRIINENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ KH+++ PP Sbjct: 476 SLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I K Y +D+ K+ L + K+ + R+KGLGEM +QL ET M+ R Sbjct: 536 LYKIKHENKVHYFYDDFEKETFLGSIDVVKRNKVSLQRYKGLGEMNPTQLWETTMNPATR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + + LMG + R +FI++ A + ++ Sbjct: 596 KMKLIEIDDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638 >gi|21222282|ref|NP_628061.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)] gi|544466|sp|P35886|GYRB_STRCO RecName: Full=DNA gyrase subunit B gi|8247656|emb|CAB92994.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)] Length = 686 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 250/692 (36%), Positives = 376/692 (54%), Gaps = 25/692 (3%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + + + D+ + ++ AS +YDAS+I +LEGL+ VR RPGMYIG T E Sbjct: 1 MADSGNPNENNPSTDTGVNDAVSTSHGDASASYDASAITVLEGLDAVRKRPGMYIGSTGE 60 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E Sbjct: 61 RGLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVE 119 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++LT LHAGGKF Y +SGGLHGVG+SVVNALS + V V ++Q++ G+P + Sbjct: 120 VVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQEYKLGVPTA 179 Query: 192 PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 L + E GT +TF D IF + L + Q A+L+ +K + ++E Sbjct: 180 SLARHEATEE-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLKINLTDERES 237 Query: 252 -----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 ++ + +++ GG+ ++ + + + Sbjct: 238 AKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSL 297 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISI 357 ++E A+ W + S+ N I T EGGTHE G R ALT I KYA + ++ ++ Sbjct: 298 SLEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNL 357 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+ I+SV + EP+F GQTKTKL + + + V+ + + +L +NP EA Sbjct: 358 TGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAAD 417 Query: 418 LLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 ++ I+ + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGG Sbjct: 418 IIRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGG 477 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK RN QA+LP+RGKILNV A ++I NQ+I ++ A G + E LRY Sbjct: 478 SAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIEKLRYH 537 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEE 595 K+I+M DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + Sbjct: 538 KIILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGRDDFEYAYSDR 597 Query: 596 HKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + ++E ++ GK + + RFKGLGEM A +L+ T MD R L +V ++ Sbjct: 598 ERDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDD----AA 653 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + LMG + R FIQ A + + Sbjct: 654 QADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685 >gi|83816748|ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855] gi|83758142|gb|ABC46255.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855] Length = 652 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 261/654 (39%), Positives = 375/654 (57%), Gaps = 23/654 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y AS+I++LEGLE VR RP MYIG + LHHL EV+DN++DE +AG+ + I V + Sbjct: 13 SDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCDEIGVEI 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +++ DNGRGIPV+ HP ++S LE+++T LHAGGKFD +Y++SGGLHGVG+SV Sbjct: 73 YEDGSVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQVSGGLHGVGVSV 131 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDK 219 VNAL+ VTV R +++ Q + G+P P+ + + + GTRI F PD IF Sbjct: 132 VNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRIRFWPDGDIFKT- 190 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + A+L+ V+ + E+ +E ++ G+ ++ E Sbjct: 191 TEFRFETLSDRLRELAFLNAGVRIRVEDHR---EEDKGLARETYHSEEGIIGFVDYLDEA 247 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 R I E E G VE A+ + +E + S+ N I T EGGTH +G R AL Sbjct: 248 RDSILDETIYI-AETDG--EVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTGFRRAL 304 Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR +K+YA+ + DD +LSV + EP+F GQTKTKL + D Q V Sbjct: 305 TRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSDVQGIV 364 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+ + +L +P +A +++E VI+ +E R RK RE V RK A LPGKLAD Sbjct: 365 ESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLPGKLAD 424 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS EL++VEGDSAGGSAKQAR+R QA+LPLRGKILNV A ++I + QI + Sbjct: 425 CSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEHDQIQN 484 Query: 516 LVQALG---CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 +V ALG T ++ ++RY K+++MTDADVDGAHI SLLLTFFY+++ LIE+ ++ Sbjct: 485 IVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNI 544 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+RI G++ +Y +E Q + E + G + R+KGLGEM QL T Sbjct: 545 YIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNS-PSMQRYKGLGEMNPEQLWTTT 603 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R + +V I + LMG + R +FI+ A + + Sbjct: 604 MNPETRKIQQVTIQD----AAAADRLFSTLMGDSVEPRREFIERNAKYAT-IDA 652 >gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34] gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34] Length = 650 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 377/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEKDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V R I Q++ RG +S L ++ GT + F PDP+IF + Sbjct: 131 VVNALSTQLDVAVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ EN+ Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I E G +VE A+ + + S+ N I T EGGTHE G R ALT Sbjct: 245 EVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N A ELFIVEGDSAGGSAK R+R +QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y E Q+ + G+ K + R+KGLGEM QL ET Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645 >gi|254294168|ref|YP_003060191.1| DNA topoisomerase IV subunit B [Hirschia baltica ATCC 49814] gi|254042699|gb|ACT59494.1| DNA topoisomerase IV, B subunit [Hirschia baltica ATCC 49814] Length = 653 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 343/656 (52%), Positives = 461/656 (70%), Gaps = 9/656 (1%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A Q+ Y A I +LEGLEPVR RPGMYIGGTDE+A HHLF+E++DN+MDE +AG+ Sbjct: 2 AAKGQAEKQEYSAKDIEVLEGLEPVRKRPGMYIGGTDERAFHHLFAEILDNSMDEAVAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I+V L +G+L+V D+GRGIPV+ HPKFP KS LE+I+TTLH+GGKF N Y+ +GG Sbjct: 62 ASRIDVHLRADGYLSVRDDGRGIPVDPHPKFPGKSALEVIMTTLHSGGKFSNKAYQTAGG 121 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS+ L V VAR ++ Q F RG + P+++ N+RGT ++F+PD Sbjct: 122 LHGVGISVVNALSERLEVEVARDKKLYFQAFERGHSMGPIKQIGNAPNRRGTVVSFKPDF 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTY 272 +IFG K F ARL +M ++KAYL + W CD E + E P + ++P GL Sbjct: 182 EIFGTKIQFKPARLYQMAKAKAYLHQGAQIHWKCDPELLKENDKTPTEAVLHYPNGLADM 241 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA---WCEENPEITSYCNTILTDEGGT 329 L+ E + +++S+IF G+ E + + EE+ SYCNT+ T +GGT Sbjct: 242 LKEMSEGKIMVTSDIFAGRVEMDNGAACEWAMCWSANGFGEEDGITRSYCNTVPTRDGGT 301 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE+G+R A+T+G++ Y ELT K+A I +DD++ SA +LSVFIREPEF GQTK KL S Sbjct: 302 HEAGMRSAITKGLRAYGELTNVKKASQITADDILSSAGALLSVFIREPEFVGQTKDKLSS 361 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + R E ALRD FDH+L +P EATKLL+W IE+S+ R+RRRK++EV+R++A RKLRL Sbjct: 362 PEGLRVAEGALRDRFDHWLTASPKEATKLLDWAIEQSDLRMRRRKEKEVSRQSATRKLRL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL+DCS N TE+FIVEGDSAGGSAKQARNR QA+LPLRGKILNVASAG++K+R Sbjct: 422 PGKLSDCSSNSKEDTEIFIVEGDSAGGSAKQARNRKTQAILPLRGKILNVASAGADKLRA 481 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N ++ DL ALG ++ +DLRY++V+IMTDADVDGAHIA+LL+TFFY++M DLI Sbjct: 482 NVELNDLATALGTGIGRKFDIDDLRYQRVVIMTDADVDGAHIAALLITFFYKQMPDLITS 541 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 LF+ PPL+++ G KS YA D+EHK +++ K +E+SRFKGLGEM+ +QLK Sbjct: 542 GRLFMAMPPLYKLAAGNKSAYARDDEHKDELMRTMFK--GKNVEVSRFKGLGEMMPAQLK 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD KR++ R+ + L S + + LMG KA+ RFKFIQ+ A F++++ Sbjct: 600 ETTMDPAKRSMARIALPDGLESPG---ELVETLMGKKAEHRFKFIQDNAEFVEELD 652 >gi|83594042|ref|YP_427794.1| DNA topoisomerase IV subunit B [Rhodospirillum rubrum ATCC 11170] gi|83576956|gb|ABC23507.1| Gram negative topoisomerase IV, subunit B [Rhodospirillum rubrum ATCC 11170] Length = 665 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 360/650 (55%), Positives = 468/650 (72%), Gaps = 10/650 (1%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A SI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DNAMDE +AGYA +I++ L Sbjct: 17 YTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDLAV 76 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIP++ HP+FP+KS LE+ILTTLH+GGKF Y++SGGLHGVGISVVN Sbjct: 77 DGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVVN 136 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALSD L V VAR T+++Q F RG PL PL+K N+RGT++ F PD +IFG +A F Sbjct: 137 ALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARFK 196 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 A L +M +SKAYL V+ WSC E + + G+P ++ F+FP GL YL L NR L Sbjct: 197 PALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALANRPL 256 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341 + F G GTVEWA+ W E++ SY NTI T EGGTHE+GLR ALTRG Sbjct: 257 VGGRTFAGTANLPDDM-GTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALTRG 315 Query: 342 IKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++ +AE++ NK+ A ++ ++D++ A + S+F+R+P+F GQTK KL S +A R VE AL Sbjct: 316 LRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQAL 375 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 RDPFDH+L P A LL +ER++ERLRRR+ +E +RKTA +KLRLPGKL+DC+++ Sbjct: 376 RDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDCTRST 435 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 GTELF+VEGDSAGGSAKQAR+R QAVLPLRGKILNVASA +K+R NQ++ DL +AL Sbjct: 436 RQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAEAL 495 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR + E LRY+KV+IMTDADVDGAHIASLL+TFF++EM L+ HL+L PPL+ Sbjct: 496 GCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMPPLY 555 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R+TQG SVYA D+ HK ++++ K KGK+EISRFKGLGEM +QL+ET M R L Sbjct: 556 RLTQGGTSVYARDDAHKDQLMKTVFKT-KGKVEISRFKGLGEMPPAQLRETTMAYATRQL 614 Query: 641 LRVEI-----NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LRV + +D ++T + +LMG K + RF+FIQE A F +++ Sbjct: 615 LRVTVPGGKTEEDREDARETAKLVEELMGRKPELRFRFIQENARFAENLD 664 >gi|75675845|ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255] gi|74420715|gb|ABA04914.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255] Length = 685 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 381/686 (55%), Positives = 492/686 (71%), Gaps = 20/686 (2%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLF+ + + S+ ++ A +Y A+ I +LEGLEPVR RPGM Sbjct: 14 ADDLFAASETKGRSSARAPGRASG-----------AEADYTAADIEVLEGLEPVRRRPGM 62 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDEKALHHLF+EVIDNAMDE +AG+A I V L +GFLTV DNGRGIPV+ HPKF Sbjct: 63 YIGGTDEKALHHLFAEVIDNAMDEALAGHATFIVVELAADGFLTVTDNGRGIPVDPHPKF 122 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 P KS LE+I+ TLH+GGKFD+ YE SGGLHGVG+SVVNALS L V VAR ++ F Sbjct: 123 PKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGVSVVNALSSHLEVEVARSQNLYRMTF 182 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 RG P LE ++ N+RGT I F+PD +IFG KA F RL KMT+SKAYL G V+ Sbjct: 183 ERGHPKGKLEDLGRIANRRGTTIRFKPDTEIFGAKAAFKPQRLFKMTRSKAYLFGGVEIR 242 Query: 245 WSCDKEIAEK-YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 W C E+ + +P + F+FPGGLK YL + +L+ +IF+G++ + G H G E Sbjct: 243 WRCAPELLKGLEDLPPEATFHFPGGLKDYLAAAIHKDTLVHPDIFSGRSGRNGAH-GACE 301 Query: 304 WAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361 WA+AW + + ++SYCNT+ T +GGTHESGLR AL RG+K +AE KRA SI S+D Sbjct: 302 WAVAWTADADGFLSSYCNTVPTPDGGTHESGLRSALLRGLKDHAERVGQGKRAGSITSED 361 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 +M+ A +LSVF+REPEF GQTK +L + +A R VE A++DPFDH+L NP +A +LL++ Sbjct: 362 VMVGAAVMLSVFVREPEFQGQTKDRLATAEASRIVEQAIKDPFDHWLSGNPAQANRLLDF 421 Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 VIER++ERLRRR ++E +RK+A++KLRLPGKLADC+ G+ELFIVEGDSAGGSAKQA Sbjct: 422 VIERADERLRRRAEKETSRKSAVKKLRLPGKLADCTNTATEGSELFIVEGDSAGGSAKQA 481 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+R QAVLPLRGKILNV SA +K+ N Q+ DL+QALGC T + YREEDLRY +VIIM Sbjct: 482 RDRKTQAVLPLRGKILNVVSATRDKVTANAQLADLIQALGCGTGTNYREEDLRYSRVIIM 541 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TDADVDGAHIASLL+TFFY++M LI++ HL+L PPL+R+T G+K+VYA DE HK +L Sbjct: 542 TDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAVPPLYRLTHGSKTVYARDEAHKDALL 601 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + + + K+++ RFKGLGEM+ +QLKET MD KRT+LRV + +DT DS+ + Sbjct: 602 KS-EFNANAKVDVGRFKGLGEMMPAQLKETTMDPAKRTMLRVML--LAEDREDTADSVER 658 Query: 662 LMGTKADERFKFIQERASFI--DDVG 685 LMGTKA+ RF FI ++A F D + Sbjct: 659 LMGTKAEARFAFISDKAVFASEDMLD 684 >gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 650 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEEDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V+V R I Q++ RG +S L ++ GT + F PDP+IF + Sbjct: 131 VVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ EN+ Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I E G +VE A+ + + S+ N I T EGGTHE G R ALT Sbjct: 245 EVIFENPIYTDGELDGI---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N A ELFIVEGDSAGGSAK R+R +QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y E Q+ + G+ K + R+KGLGEM QL ET Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645 >gi|52080434|ref|YP_079225.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580] gi|52785813|ref|YP_091642.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580] gi|52003645|gb|AAU23587.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580] gi|52348315|gb|AAU40949.1| ParE [Bacillus licheniformis ATCC 14580] Length = 655 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 363/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ + I V + Sbjct: 8 DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T EIILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R ++ Q+F G K K GT I F+PDP +F F Sbjct: 126 NALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTKKTGTLIHFKPDPAMFSTTT-F 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K +++ + E F + G++ ++ E + Sbjct: 185 NFETLSERLRESAFLLKGLKIELIDERDQTK-------ETFLYENGIEAFVAYLNEEKD- 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 SE+ + + E G V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 ALSEVVSFEGEHNGI---EVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 354 AIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAQSRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +F+ Sbjct: 474 TIIHAIGGGVGADFDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL E Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1] Length = 650 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 262/652 (40%), Positives = 382/652 (58%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Q + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 QEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFADKI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV ++ + +TV+DNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 EVYIEPDNSITVIDNGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + ++ Q++ RG ++ LE + ++ GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD A+L K Q A+L+ + + +E E+ +++ GG+ +Y++ Sbjct: 187 ETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKE-----YHYEGGIASYVEYLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 EN+ +I + E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFETPIYTEGEMDDI---TVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 D F +L++NP A +++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A TELFIVEGDSAGGSAK R+R QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDRKFQAILPIRGKILNVKKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT FY+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ I G++ Y E+ Q LE G+ K I R+KGLGEM QL Sbjct: 539 IAQPPIYGIKVGSEIKEYIQPGVNQEQELQDALER-HSTGRSKPTIQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ R + RV ++ + + LMG K + R +FI+E A + Sbjct: 598 WETTMNPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|322389469|ref|ZP_08063021.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus parasanguinis ATCC 903] gi|321143847|gb|EFX39273.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus parasanguinis ATCC 903] Length = 649 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 237/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVEDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PDP IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMPDPTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ + F++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + LEE ++ + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|86607821|ref|YP_476583.1| DNA gyrase subunit B [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556363|gb|ABD01320.1| DNA gyrase, B subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 642 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 265/651 (40%), Positives = 379/651 (58%), Gaps = 25/651 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY N I++S Sbjct: 2 TENYGAEQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCNDIQIS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G ++V+DNGRGIPV+ HPK +S L +LT LHAGGKF Y++SGGLHGVG+S Sbjct: 62 LHPDGSVSVLDNGRGIPVDIHPK-TGQSALVTVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGD 218 VVNALS+ + VTV R+ ++ Q+F RG + L+ + K N+RGT + F+PD IF + Sbjct: 121 VVNALSEWVEVTVWREGKVYFQRFERGAVVGSLKSEPQPKGSNRRGTEVRFKPDGLIFPE 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD A L + AYL+ +K +S + P E + + GG+K Y+ Sbjct: 181 -REFDYAVLAARFRELAYLNAGLKITFSDLRR-----DPPHCETYQYAGGIKEYVAFINH 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHESGLRV 336 ++ I S+I + E+ G VE A+ WC + + N I T+EGGTH GL+ Sbjct: 235 EKTPIHSDIIYIQGERDGV---EVEVALQWCSDVYTDTLIGFANNIRTNEGGTHLEGLKT 291 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LT I A + ++ +++ I+SV + PEF GQTKTKL + + + Sbjct: 292 SLTLTINSQARKLNKLKDSDSNLAGENVREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRG 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V+ + + YL NP A +++ I+ R+ RE V RK+A+ LPGKL Sbjct: 352 IVQTLVSEALTEYLEFNPNVARGIVDKAIQSFNAAEAARRARELVRRKSALESSTLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +E+++VEGDSAGGSAKQ R+R QAVLPLRGKILN+ A KI N +I Sbjct: 412 ADCSCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEI 471 Query: 514 MDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ ALG + ++ LRY ++I+MTDADVDG+HI +LLLTFFY+ L+EQ ++ Sbjct: 472 QAMITALGLGVKGDEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYV 531 Query: 573 FLISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL++I G Y + + K +IL + K I RFKGLGEM+ QL ET Sbjct: 532 YIACPPLYKIEWGRNNVRYCYSDAEKDQILRGLPAN--AKYTIQRFKGLGEMMPEQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M+ RTL ++ I + + LMG R +FI+ ++ +D Sbjct: 590 TMNPATRTLKQITIEDAV----EADRIFTILMGDAVGPRREFIEAHSAHLD 636 >gi|319645607|ref|ZP_07999839.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2] gi|317392493|gb|EFV73288.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2] Length = 657 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 363/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ + I V + Sbjct: 10 DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T EIILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDNSISVQDRGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R ++ Q+F G K K GT I F+PDP +F F Sbjct: 128 NALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTKKTGTLIHFKPDPAMFSTTT-F 186 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K +++ + E F + G++ ++ E + Sbjct: 187 NFETLSERLRESAFLLKGLKIELIDERDQTK-------ETFLYENGIEAFVAYLNEEKD- 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 SE+ + + E G V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 239 ALSEVVSFEGEHNGI---EVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 295 Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 296 FNEYARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVD 355 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 356 AIVSEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 416 PAQSRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +F+ Sbjct: 476 TIIHAIGGGVGADFDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 535 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL E Sbjct: 536 ALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLWE 591 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 592 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 637 >gi|312867767|ref|ZP_07727973.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405] gi|311096830|gb|EFQ55068.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405] Length = 649 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 237/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVEDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PDP IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMPDPTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ + F++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVSFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + LEE ++ + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|203287878|ref|YP_002222893.1| DNA gyrase, subunit B [Borrelia recurrentis A1] gi|201085098|gb|ACH94672.1| DNA gyrase, subunit B [Borrelia recurrentis A1] Length = 639 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 239/647 (36%), Positives = 365/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL E++DN++DE +AG+ + IEV ++ Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEIVDNSIDEALAGFCDRIEVVIN 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + V DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVG+SVV Sbjct: 67 SDNSIMVNDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R+ +F Q +SRGIP S +E V GT++TF D +IF + Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSFTTGTKVTFFADSEIFETL-KY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L + + A+L+ +++ + EK+ FYF GG+K ++ N Sbjct: 184 DFETLSRRLRELAFLNDKIRISIEDRRLGEEKFLE-----FYFEGGIKAFVDYITNNNKN 238 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I S + + ++W + + S+ N I T EGGTH +G + L + Sbjct: 239 IQSSPYFIEGVCNDVIVSVGLKWTEGYSDN---TLSFVNNINTKEGGTHVAGFKSGLLKA 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K ++ DD ++S+ + EP+F GQTK KL + ++ VE Sbjct: 296 MSETFRDSKISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETI 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + +N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 356 VYDGLLRIINENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTS 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 416 KNPAEREIYIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 475 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LI+ KH+++ PP Sbjct: 476 SLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPP 535 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++I K Y +D+ K+ L + K+ + R+KGLGEM +QL ET M+ R Sbjct: 536 LYKIKHENKVHYFYDDFEKETFLGSIDVGKRNKVSLQRYKGLGEMNPTQLWETTMNPATR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +EI+ + + LMG + R +FI++ A + ++ Sbjct: 596 KMKLIEIDDAI----QAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 638 >gi|311068376|ref|YP_003973299.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942] gi|310868893|gb|ADP32368.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942] Length = 656 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 363/658 (55%), Gaps = 34/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ Sbjct: 1 MARKQQQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V + + ++V D GRG+P H K T E+I T LHAGGKF Y+ SGGL Sbjct: 61 DHIIVKIHKDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L VT+ R ++ Q+F G K K GT F+PDP Sbjct: 119 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLDKIGTTKKSGTLTHFKPDPA 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 +F ++ L + + A+L +K ++ E E FY+ G++ ++ Sbjct: 179 MFSVTT-YNFETLSERLRESAFLLKGLKIELIDERHQVE-------EVFYYENGIEAFVA 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E + SE+ + + E + V++A + + I S+ N + T +GGTHESG Sbjct: 231 YLNEEKD-SLSEVVSFEGEHN---QIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESG 286 Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389 + A+TR +YA ++ ++ D+ I+SV I E +F GQTK KL + Sbjct: 287 AKTAMTRAFNEYARKVSLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGT 346 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446 +A+ V+ + + ++L +N AT L++ I+ S+ R RK RE R RK Sbjct: 347 SEARSAVDAVISEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSE 406 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A Sbjct: 407 ATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLAD 466 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ A+G + + ED+ Y+K++IMTDAD DGAHI LLLTFFY+ M L Sbjct: 467 IFKNEEINTIIHAIGGGVGADFEVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPL 526 Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 IE +F+ PPL+++++G K + YA +E +L++ K I R+KGLGE Sbjct: 527 IEHGKVFIALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGE 582 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 583 MNADQLWETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 636 >gi|321401274|gb|ADW83048.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401276|gb|ADW83049.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401280|gb|ADW83051.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++S+ + + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ +++QK+ +G+P+S ++ + RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + E E F F GG+ ++++ Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ + +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S Y + ++ K+++L+ K+ I R+KGLGEM QL ET Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638 >gi|24212705|ref|NP_710186.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45655919|ref|YP_000005.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193336|gb|AAN47204.1|AE011192_5 DNA gyrase subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45599152|gb|AAS68642.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|321401260|gb|ADW83041.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401264|gb|ADW83043.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401268|gb|ADW83045.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401272|gb|ADW83047.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401278|gb|ADW83050.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++S+ + + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ +++QK+ +G+P+S ++ + RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + E E F F GG+ ++++ Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ + +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S Y + ++ K+++L+ K+ I R+KGLGEM QL ET Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNVLMGDEVQPRKQFIEVNAAKVANLD 638 >gi|149203080|ref|ZP_01880051.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035] gi|149143626|gb|EDM31662.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035] Length = 651 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 342/652 (52%), Positives = 446/652 (68%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A Sbjct: 6 SPTPKSDYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHATW 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L NG ++V DNGRGIPV+ HPK P KS LEII TL+AGGKF +Y+ SGGLHG Sbjct: 66 IEVELHANGHVSVRDNGRGIPVDPHPKDPKKSALEIIFCTLNAGGKFSGDSYQTSGGLHG 125 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VAR ++ +FSRG P +PL K N+RGT +TF PDP+IF Sbjct: 126 VGSSVVNALSDHLRVEVARNRELYMMEFSRGTPQAPLAKIGAAPNRRGTSVTFHPDPEIF 185 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G ARL KM +SKAYL V+ W + + P++ F FPGGL YL Sbjct: 186 GS-LTLKPARLFKMARSKAYLFSGVEIRWKTEISDGD---TPQEATFKFPGGLADYLGEA 241 Query: 277 LENRSLISSEIFTGKTEKKGTHR--GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L + + F G + + + G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 242 LGGATTYAERPFAGTVDFRDKYNVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEAG 301 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL+ N++A I +DL+ ++S FIREPEF GQTK +L + DA Sbjct: 302 FWAAILKGIKAYGELSNNRKAAQITREDLLAGGCALVSCFIREPEFVGQTKDRLATTDAA 361 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VE A+RD FD++L + A +L++++ R+EERLRRR+++E RKTA +KLRLPGKL Sbjct: 362 RMVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 421 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS + GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K+ +NQ+I Sbjct: 422 VDCSSSTRDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQEI 481 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG S++ +DLRY+K+IIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+ Sbjct: 482 SDLTQALGVSLGSKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDAGHLY 541 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG+K VY DE + LE+ GKGKI++SRFKGLGEM A LKET M Sbjct: 542 LACPPLYRLTQGSKRVYCLDEAERDLWLEK-GLGGKGKIDVSRFKGLGEMDAKDLKETTM 600 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D T D + +LMG K + RF++I E A F++++ Sbjct: 601 DPGSRKLIRVTIDEDE--PGQTGDLVERLMGKKPELRFQYISENARFVEELD 650 >gi|300711735|ref|YP_003737549.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus jeotgali B3] gi|299125418|gb|ADJ15757.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus jeotgali B3] Length = 635 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 247/650 (38%), Positives = 376/650 (57%), Gaps = 26/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I++LEGLE VR RP MYIG TD + LHHL EV+DNA+DE +AGY + I V++ Sbjct: 5 SEYGAGQIQVLEGLEAVRTRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGYCDTIGVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V D+GRGIPV+ H ++ ++ +E+I+T LHAGGKFD+ +Y++SGGLHGVG+SV Sbjct: 65 HEDGSVSVADDGRGIPVDTHAEY-DRPAVEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ +F G P +E+ + GT + F PD IF D+ Sbjct: 124 VNALSERLEVEIRRDGAVWHHRFDHGAPEGDIERVRDLEAEEETGTTVRFWPDDGIFEDR 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + L + A+L+ V+ + +++ E F + GG++ +++ E Sbjct: 184 -EFVVSTLENRIRELAFLNPGVEITLADERDETE-------STFQYDGGIREFVEYLNET 235 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338 R+ + ++ E++ VE A+ +E I ++ N I T EGGTH +G + AL Sbjct: 236 RTPLHEDVLYLDDEERNIQ---VEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTAL 292 Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + YA I ++ +D+ ++S+ +P+F GQTKTKL + + + V Sbjct: 293 TRVVNDYANGEGLLDEIDENLRGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+A+ + Y ++P A ++ +E ++ R ++ E RK+A+ LPGKLAD Sbjct: 353 ESAVHEGLGTYFEEHPDTAQAVVRKAVEAAKARKAAKQAEELTRRKSALESTALPGKLAD 412 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + ELF+VEGDSAGGSAKQ RNR QA+LPL+GKILNV ++I N +I D Sbjct: 413 CQTRDPNEAELFVVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKHRLDRILENNEIRD 472 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ A+G ++ ++ RY++++IMTDADVDGAHI +LLLT FY+ M LIE +++ Sbjct: 473 LITAVGAGVGEEFDIDEARYKRIVIMTDADVDGAHIRTLLLTLFYRHMRPLIEAGYVYAA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+ G ++ A E ++ I++E+ + I RFKGLGEM QL ET M+ Sbjct: 533 QPPLYRLRYGGETREAMAEAEREAIIDEYGAPDR----IQRFKGLGEMNPDQLWETTMNP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L RV + + LMG + R +FIQE A + V Sbjct: 589 DNRVLKRVTVED----AAAADRMFSVLMGDAVEPRKQFIQEHAKEAEWVD 634 >gi|307566039|ref|ZP_07628497.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A] gi|307345227|gb|EFN90606.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A] Length = 656 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 268/667 (40%), Positives = 384/667 (57%), Gaps = 27/667 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 NQ +NY AS+I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY Sbjct: 2 TENQEHENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV+++ + +TV DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGL Sbjct: 62 TDIEVTINADNSITVEDNGRGIPVDEHKKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS + V R I+ Q++ +G PL P++ +K GTR F PD Sbjct: 121 HGVGVSCVNALSKHMLSQVFRDGKIYQQEYEKGKPLYPVKIVGDT-DKTGTRQQFWPDGT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + AYL+ +K + + AE E F+ GLK Y++ Sbjct: 180 IFTTTV-FQWDVVARRMRELAYLNAGIKITLTDLRPNAETGKT-RTEVFHAKDGLKEYVR 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +R + ++ K+EK+G +E AI + + I SY N I T EGGTH G Sbjct: 238 YVDRHRQHLFDDVIYLKSEKQGVP---IEVAIMYNTDYTENIHSYVNNINTIEGGTHLQG 294 Query: 334 LRVALTRGIKKYAEL------TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR +K YA+ K I I +D ++SV + EP+F GQTKTKL Sbjct: 295 FRTALTRSLKAYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRK 446 + + V+ A+ + YL ++P EA + V+ + R+ + V RK + Sbjct: 355 GNSEVSGAVQQAVGEALSAYLEEHPNEAKMICNKVVIAATARIAARKARESVQRKNVMTG 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV + Sbjct: 415 GGLPGKLADCSNKDPKVCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHR 474 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +M+++Q++G R + E LRY+K+IIMTDADVDG+HI +L++T FY Sbjct: 475 VFEAESVMNIIQSIGVRFGVEEDSDFEANIEKLRYDKIIIMTDADVDGSHIDTLIMTLFY 534 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKG 619 + M +IEQ HLF+ +PPL++ T S Y + E+ +Q ++ + +GK I R+KG Sbjct: 535 RYMPKVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDRYGAGEEGKNIHTQRYKG 594 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL ET MD +KR L +V I + D + + LMG + R +FI++ A+ Sbjct: 595 LGEMNPEQLWETTMDPSKRLLKQVTIE----NAADADEVFSMLMGDDVEPRREFIEQNAN 650 Query: 680 FIDDVGT 686 + ++ Sbjct: 651 YA-NIDA 656 >gi|312116002|ref|YP_004013598.1| DNA topoisomerase IV subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311221131|gb|ADP72499.1| DNA topoisomerase IV, B subunit [Rhodomicrobium vannielii ATCC 17100] Length = 691 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 372/689 (53%), Positives = 498/689 (72%), Gaps = 23/689 (3%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLF + + G P +++Y A+ I +LEGLEPVR RPGM Sbjct: 9 TRDLFGEGSEPEKPKAGGSAARGASP----------AESYTAADIEVLEGLEPVRRRPGM 58 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDEKA+HHLF+EVIDNAMDE +AGYA+ IEV+LD +G L+V DNGRGIP++ HPK+ Sbjct: 59 YIGGTDEKAMHHLFAEVIDNAMDEAVAGYASFIEVALDADGTLSVADNGRGIPIDPHPKY 118 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 P KS LE+I+TTLH+GGKF++ Y SGGLHGVGISVVNAL+++L V VAR ++ Q F Sbjct: 119 PGKSALEVIMTTLHSGGKFNSKVYSTSGGLHGVGISVVNALAEKLEVEVARNGKLYRQTF 178 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 +RG+P S LE VRN+RGT + F PDP+IF ++A F R+ KM ++KAYL G V+ Sbjct: 179 ARGLPTSKLEDVGVVRNRRGTTVRFHPDPEIFKERATFRPVRIFKMARAKAYLFGGVEIR 238 Query: 245 WSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 W+C E+ + +PEK F+FPGGL+ +L +++E + ++ ++F+G+ +K+G H G+VE Sbjct: 239 WTCAPELLKGDADVPEKAVFHFPGGLRDFLSSRIEKLTTVTKDVFSGRVQKEGGH-GSVE 297 Query: 304 WAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362 WAIAW +++ + SYCNT+ T EGGTHE+GLR ALT+ ++ Y ELT NKRA + +DD+ Sbjct: 298 WAIAWIADDDGFMQSYCNTVPTPEGGTHEAGLRAALTKSLRAYGELTNNKRAAQVTADDV 357 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 +++ +LSVF REPEF GQTK +L S +A R VEN ++D FDH+L +P +A LLE+V Sbjct: 358 FVASGAMLSVFFREPEFQGQTKDRLSSAEAARIVENTVKDAFDHWLTASPQQANGLLEFV 417 Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 IER+EERLR+R+++E R+ A R+LRLPGKLADCS+N TE+FIVEGDSAGGSAKQAR Sbjct: 418 IERAEERLRKRREKETQRQKATRRLRLPGKLADCSKNAKDDTEIFIVEGDSAGGSAKQAR 477 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 +R+ QA+LPLRGKILNVASA +K+ NQ + DL ALGC T Y + DLRY++VIIMT Sbjct: 478 DRATQAILPLRGKILNVASASRDKLAQNQLLSDLTLALGCGTGKHYIDTDLRYDRVIIMT 537 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDGAHIASLL+TFFY++M DLI HLFL PPL+R++QG K+ YA D+ H + L+ Sbjct: 538 DADVDGAHIASLLITFFYRQMPDLIRNGHLFLAVPPLYRLSQGGKTAYARDDAHLAE-LK 596 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN---------KDLNSLK 653 +G+GK+E+SRFKGLGEM+ +QLKET MD KR +LRVEI + Sbjct: 597 RTVFNGRGKLEVSRFKGLGEMMPAQLKETTMDRKKRMMLRVEIAGRGGDLNGVDTKSEET 656 Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682 + + +LMG K + RF+FIQERA+F + Sbjct: 657 AAAEVVEQLMGNKPEARFRFIQERAAFAE 685 >gi|116326860|ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116119604|gb|ABJ77647.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 641 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 251/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +S+ N + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ I++QK+ +GIP+SP+E K RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + AE + E F F GG+ ++++ Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 475 RILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 534 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S YA+ ++ K+++L+ G K+ I R+KGLGEM QL ET Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus cristatus ATCC 51100] gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus cristatus ATCC 51100] Length = 649 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 378/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFATHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGME-----QVKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y EE Q LE + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGANQEEELQAALEHYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R FI++ A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRRDFIEKNAVY 644 >gi|24753767|gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira interrogans] gi|321401258|gb|ADW83040.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401262|gb|ADW83042.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401266|gb|ADW83044.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401270|gb|ADW83046.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 244/653 (37%), Positives = 382/653 (58%), Gaps = 21/653 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQEETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++S+ + + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 KISILPDNIVEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ +++QK+ RGIP+S ++ + RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + E E F F GG+ ++++ Sbjct: 180 T-VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNE---FQFSGGIVSFVEHIN 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 236 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 292 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 293 LTRTLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 353 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 413 ADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 472 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ + +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 473 RVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYL 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S Y + ++ K+++L+ K+ I R+KGLGEM QL ET Sbjct: 533 YVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAE---KVVIQRYKGLGEMNPEQLWETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 590 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638 >gi|296331026|ref|ZP_06873501.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674543|ref|YP_003866215.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296152031|gb|EFG92905.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412787|gb|ADM37906.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 655 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 250/651 (38%), Positives = 369/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AGY + I V + Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ Q+F G P++ LEK K + GT F+PDP +F Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ ++E FY+ G++ ++ E + Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQQEIFYYENGIEAFVAYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 SE+ + + E H V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 -ALSEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 353 DAVVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + +D+ Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|227500982|ref|ZP_03931031.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] gi|227216755|gb|EEI82153.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] Length = 641 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 264/654 (40%), Positives = 389/654 (59%), Gaps = 23/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N +NYDA +IR+LEGLEPVR+RPGMYIG T ++ LHHL EV+DN++DE +AG + Sbjct: 6 RNSMQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTSQRGLHHLVYEVVDNSVDEALAGRCD 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V++D + ++V D+G GIPV+ HP +KSTLE +LT LHAGGKFD+S Y++SGGLH Sbjct: 66 YIKVTIDKDNVVSVEDDGSGIPVKEHP-TTHKSTLETVLTVLHAGGKFDDSAYKVSGGLH 124 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ L V R I+ +F+RG +E GT+ITF+ D +I Sbjct: 125 GVGVSVVNALSEYLIAEVKRDGHIYKMEFARGEVTKDIEVIGDTVE-TGTKITFKADGEI 183 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F +D L + A+L+ V+ + ++E + F F GG+ ++ Sbjct: 184 FDTTI-YDRTILENRFREMAFLNKGVEIQFEDEREDFKTS-------FKFEGGISEFVAY 235 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N+ I I ++ T VE+A + + I SY N I T EGG+H +GL Sbjct: 236 LNRNKDPIMEMIPNFDGFQEDT---EVEFAFQYTDAYSENILSYANNIQTPEGGSHLAGL 292 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +LTR + YA ++ +D+ I+SV I +P+F GQTK+KL + + Sbjct: 293 RSSLTRTVNDYARKYNFLKDNEDNLQGEDIREGITAIISVKITDPQFEGQTKSKLGNSEV 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + V+ + + ++L +NP A +++ + R RK R+ +++ + LPG Sbjct: 353 RGAVDTFISEHLANFLEENPKPAKAIIDKALASRRAREAARKARDLTRKRSILDSATLPG 412 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC E+FIVEG+SAGGSAK R+ QA+LPLRGKI+NV A +++ N++ Sbjct: 413 KLADCQSTDIGENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDRVLNSE 472 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +++ A G ++ E LRY K+IIMTDADVDGAHI +LLLTFFY+ M DLI++ H Sbjct: 473 EIKNMITAFGTGIGKEFDLEKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDKGH 532 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI+ G K Y + ++ + K+++E G +I+R+KGLGEM A QL ET Sbjct: 533 VYVALPPLYRISVGKKERYVYSDDERDKVIKEL---GVDNYKINRYKGLGEMNAEQLWET 589 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD ++R LLRV + T D+ LMG K + R FIQE A ++ D+ Sbjct: 590 TMDPDRRVLLRVV---EDMESTTTDDTFALLMGEKVEPRRNFIQENAKYVTDID 640 >gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126] gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126] Length = 650 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 257/651 (39%), Positives = 379/651 (58%), Gaps = 22/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q++ RG+ ++ L + GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETEKH-GTTVHFTPDPEIFQ 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD +L K Q A+L+ ++ + +E + +++ +++ GG+ +Y++ Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLK-----QEKHYHYEGGITSYVKYIN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I E E G +VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + ++ ++ DD+ I+SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PP++ + G++ Y D+E K + E G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGADQEDKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG K + R +FI+E A + Sbjct: 599 ETTMDPENRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|254387096|ref|ZP_05002370.1| DNA gyrase subunit B [Streptomyces sp. Mg1] gi|194345915|gb|EDX26881.1| DNA gyrase subunit B [Streptomyces sp. Mg1] Length = 686 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 255/684 (37%), Positives = 381/684 (55%), Gaps = 26/684 (3%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 E +S A N + +YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL E Sbjct: 9 ADSGNPNEKNESTAGENGEVTASYDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYE 68 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV+ P K +E++LT LHAG Sbjct: 69 VVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVDIVP-SEGKPAVEVVLTVLHAG 127 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y +SGGLHGVG+SVVNALS ++ V V R ++Q + G P + L K E+ Sbjct: 128 GKFGGGGYAVSGGLHGVGVSVVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET- 186 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------ 254 + GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 187 DAHGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADD 245 Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 ++Y+ GG+ +++ + + + +VE A+ W Sbjct: 246 PDADAVEPPARTVKYYYEGGIVDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQW 305 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + + S+ NTI T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 306 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREG 365 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + +A+ V+ + + + + +NP+EA ++ I+ Sbjct: 366 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQA 425 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 426 ATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 485 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M DA Sbjct: 486 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADA 545 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + ++E Sbjct: 546 DVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 605 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D + Sbjct: 606 GKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDD----AAQADDLFSV 661 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + + Sbjct: 662 LMGEDVEARRSFIQRNAKDVRFLD 685 >gi|205373638|ref|ZP_03226441.1| DNA topoisomerase IV subunit B [Bacillus coahuilensis m4-4] Length = 657 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 239/658 (36%), Positives = 366/658 (55%), Gaps = 34/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + + Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY Sbjct: 1 MAKEKKTIEYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGYG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V++ + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGL Sbjct: 61 DHIKVTIHKDNSISVEDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L VT+ R ++ Q+F G + ++ GT I F+PD Sbjct: 119 HGVGASVVNALSEWLVVTIKRDGIVYEQRFENGGKPASSLERMGSTKSTGTTIHFKPD-T 177 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F+ L + + A+L +K ++ +++ F+F G++ +++ Sbjct: 178 TMFSTTTFNYDTLSERLRESAFLLKGMKIEIIDER-------FDQRDVFHFETGIEAFVE 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E++ + + + + E+ VE+A + + I S+ N + T +GGTHE+G Sbjct: 231 YLNEDKDSLHKVV-SLEGEQNSI---EVEFAFQFNDGFSENILSFVNNVRTKDGGTHEAG 286 Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389 + A+TR +YA +R ++ D+ I+SV I E +F GQTK KL + Sbjct: 287 AKTAMTRVFNEYARKVSILKERDKNLEGTDIREGLTAIISVRIPEELLQFEGQTKGKLGT 346 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446 +A+ V+ + + ++L +NP + L++ I+ ++ R RK RE R RK Sbjct: 347 SEARSGVDQVVSEHLQYFLEENPDTSALLIKKAIKAAQAREAARKAREDARSGKKRKKSE 406 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + Sbjct: 407 TVLSGKLTPAQSRNPERNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQD 466 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ A+G ++ ED+ Y+K++IMTDAD DGAHI LLLTFFY+ M L Sbjct: 467 IFKNEEINTIIHAIGAGVGPEFNVEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPL 526 Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 IE +F+ PPL+++++G K V YA +E + +++ + I R+KGLGE Sbjct: 527 IEAGKVFIALPPLYKVSKGTGKKEVIEYAWTDEELKDAIKKIGR----GYIIQRYKGLGE 582 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET MD + RTL+RV I+ + + LMG K + R K+I+ +F Sbjct: 583 MNADQLWETTMDPSTRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIENNVAF 636 >gi|296876577|ref|ZP_06900627.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] gi|296432396|gb|EFH18193.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] Length = 649 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGSQIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+VVD GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVVDQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PDP IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGTAPKSKTGTKVTFMPDPTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ + F++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPV-LYFSGESDG---FQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 VVDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + LEE ++ + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSE----LEELRRTFGRGATLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|296117467|ref|ZP_06836054.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC 23769] gi|295975988|gb|EFG82779.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC 23769] Length = 676 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 358/685 (52%), Positives = 468/685 (68%), Gaps = 15/685 (2%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLFS Q + + K + + P + S++YDAS+I +LEGLEPVR RPGM Sbjct: 2 NDDLFSKPAAQRRTQARKSRAPADAPRA-------GSEDYDASAIEVLEGLEPVRRRPGM 54 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDE A HHL SE++DNAMDE +AG+A++I+VSL+ +LT+ DNGRGIPV+ HPKF Sbjct: 55 YIGGTDETAYHHLASEILDNAMDEAVAGHASVIDVSLEAGNWLTIRDNGRGIPVDPHPKF 114 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 P +S LE+ILTTLHAGGKF Y SGGLHGVG SVVNALS + V +AR T++ Q + Sbjct: 115 PQRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALSARMEVEIARDRTVWQQVY 174 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 RGIPL+P+E+ +N+RGT+I F PDP+IFG F RL ++ +SKA+L V Sbjct: 175 ERGIPLAPIEEVGPTQNRRGTQIRFVPDPQIFGKLH-FSPLRLYRLCRSKAFLFRGVTIR 233 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG---KTEKKGTHRGT 301 WSCD + + +P + +FPGGL L+ +L N +L++ T G G Sbjct: 234 WSCDPALIKGTDVPAESVLHFPGGLADSLRDELGNTALLTDIWAGDADLPTAVDGESTGR 293 Query: 302 VEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISD 360 +EWAIA+ E SYCNTI T GGTHE+G R ALT+G++ + E NKRA +I +D Sbjct: 294 MEWAIAFVERGTTGLSSYCNTIPTPNGGTHETGFRTALTKGLRNWGEQRSNKRAATINAD 353 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+M LSVFIR+P+F GQTK KL S +A R VE ALRD FDH+L NP +A LL Sbjct: 354 DIMGLISAKLSVFIRDPQFQGQTKEKLTSGEASRLVETALRDRFDHWLAGNPPQADNLLA 413 Query: 421 WVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 VIER+EERLRR++ ++ RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAKQ Sbjct: 414 VVIERAEERLRRKEMKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAKQ 473 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 ARNR QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC + LRY ++II Sbjct: 474 ARNRETQAVLPLRGKILNVASASAEKLRANQELRDLVEALGCGIGEHFDASRLRYGRIII 533 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 MTDADVDGAHIASLL+TFFY+E+ LI HL+L PPL+R+TQG K+VYA ++ +++ Sbjct: 534 MTDADVDGAHIASLLMTFFYRELPALIRGGHLYLAQPPLYRLTQGGKTVYAMNDGDRERR 593 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 L+ K K+E+SRFKGLGEM S LK+T MD RTLL+V + T++ + Sbjct: 594 LKREFK-PNAKVEVSRFKGLGEMPPSDLKQTTMDPKHRTLLKVVTP--IEDSNLTRERVE 650 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG K + RF+FIQE A ++++ Sbjct: 651 HLMGRKPELRFQFIQEHARQVENLD 675 >gi|317128925|ref|YP_004095207.1| DNA topoisomerase IV subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315473873|gb|ADU30476.1| DNA topoisomerase IV, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 658 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 363/651 (55%), Gaps = 33/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + I V++ Sbjct: 8 EYNDDSIQVLEGLEAVRKRPGMYIGSTDHRGLHHLVFEIVDNSVDEALAGYGDEITVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V DNGRG P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDESISVKDNGRGYPTGMH--STGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G P++ LE + GT + F+PDP IF Sbjct: 126 NALSEWLEVTIHRDGKIYQQRFEDGGKPVTTLEVIGSTKK-TGTTVHFKPDPSIFSTTT- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + L + + A+L +K + + E F + GL+ +++ E + Sbjct: 184 YQYDTLAERLREAAFLLKGLKIELVDARPNKDNDK----EVFQYDTGLEAFVEYLNEEKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ + T+ V++A + + + S+ N + T +GGTHE G + A+TR Sbjct: 240 VLHPVVSFQGTQDD----IEVDFAFQYNDAFTENMLSFVNNVRTKDGGTHELGAKTAVTR 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 I ++ Q +R ++ +D+ I+SV + E +F GQTK KL + A+ V Sbjct: 296 IINEHGRKLQLLKERDKNLDGNDIREGFTAIVSVRVPEDKLQFEGQTKGKLGTPVARSAV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KL 453 ++ + + +L +NP + +L++ ++ ++ R RK RE R K + KL Sbjct: 356 DSIVSEKLSFFLEENPDLSNRLIKKAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 416 TPAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEI 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + ++ ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M L+E ++ Sbjct: 476 RTIIYAIGGDVGADFQLEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRVY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G+ K YA DE+ Q+ +++ K I R+KGLGEM A+QL Sbjct: 536 IALPPLYKVSKGSGKKEKIEYAWDEDGLQEAIQKIGK----GYTIQRYKGLGEMDATQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 592 ETTMDPETRTLVRVKIDDITR----AERRVATLMGDKVEPRRKWIERNVQF 638 >gi|312864604|ref|ZP_07724835.1| DNA gyrase, B subunit [Streptococcus downei F0415] gi|311099731|gb|EFQ57944.1| DNA gyrase, B subunit [Streptococcus downei F0415] Length = 650 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 258/655 (39%), Positives = 379/655 (57%), Gaps = 24/655 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A Sbjct: 6 KNREDLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGL Sbjct: 66 SHIEVFIEEDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V + I Q++ RG+ ++ L+ +K GT + F PDP+ Sbjct: 125 HGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTGTTVHFTPDPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD +L K Q A+L+ +K S +E E + + +++ GG+ +Y+ Sbjct: 184 IFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKE-----QSQVYHYEGGIVSYVD 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 EN+ ++ E G +VE A+ + + S+ N I T EGGTHE G Sbjct: 239 YLNENKEVLFENPIYTDGEMDGI---SVEVAMQYTGTYHENVLSFANNIHTHEGGTHEQG 295 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YA + ++ ++ +D+ I+SV P+F GQTKTKL + + Sbjct: 296 FRTALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + + F +L++NP A K++E I S+ R+ ++ RE +K+ + LP Sbjct: 356 VVKITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N Sbjct: 416 GKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILAN 475 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L A+G +++ RY+K++IMTDADVDG+HI +LLLT FY+ M ++E Sbjct: 476 DEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGSHIRTLLLTLFYRYMRPVVEAG 535 Query: 571 HLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 ++++ PP++ + G++ Y E Q+ LE + G+ K + R+KGLGEM Sbjct: 536 YVYIAQPPIYGVKVGSEVKEYIQPGADQETKLQEALERY-TQGRSKPSVQRYKGLGEMDD 594 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T MD R + RV ++ + + LMG + R +FI+E A + Sbjct: 595 HQLWKTTMDPEHRLMARVSVDD----AAEADKIFDMLMGDQVGPRREFIEENAVY 645 >gi|227543723|ref|ZP_03973772.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908788|ref|ZP_07126251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri SD2112] gi|154705554|gb|ABS84203.1| DNA gyrase B subunit [Lactobacillus reuteri] gi|227186291|gb|EEI66362.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894195|gb|EFK87553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri SD2112] Length = 649 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 249/662 (37%), Positives = 376/662 (56%), Gaps = 20/662 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+ + I V ++ + +TV DNGRGIPV+ K KS LE + T LHAGGKF Y Sbjct: 62 ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206 ++SGGLHGVG SVVNALS EL V VARQ + F G S ++ E+ + GT Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+PDP+IF + ++ L + A+L+ +K +EI + F++ Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLREIDHERKE-----FHYE 235 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ Y++ E+++++ + ++ TVE ++ + + + ++ N I T Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 EGGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTK Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGILKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +++ N +I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +I ++++ PPL+++ QG Y +E ++++ + K I R+KGLGEM Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A QL ET MD R LLRV+++ + LMGTK R FI++ A F+++ Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646 Query: 684 VG 685 + Sbjct: 647 LD 648 >gi|228992295|ref|ZP_04152226.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442] gi|228767320|gb|EEM15952.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442] Length = 654 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KNNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + + GT + F+PDP IF Sbjct: 125 NALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDPSIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKITIRDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + + + +V Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|51317702|gb|AAT99972.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317704|gb|AAT99973.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317706|gb|AAT99974.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317708|gb|AAT99975.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317710|gb|AAT99976.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317712|gb|AAT99977.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317714|gb|AAT99978.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317716|gb|AAT99979.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317718|gb|AAT99980.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317720|gb|AAT99981.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317722|gb|AAT99982.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317724|gb|AAT99983.1| DNA gyrase subunit B [Borrelia hermsii] gi|112031371|gb|ABH88158.1| GyrB [Borrelia hermsii] gi|112031375|gb|ABH88160.1| GyrB [Borrelia hermsii] gi|164564666|gb|ABY61085.1| DNA gyrase B [Borrelia hermsii] gi|164564676|gb|ABY61090.1| DNA gyrase B [Borrelia hermsii] Length = 634 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 367/647 (56%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIP++ H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 SDNSITVNDNGRGIPIDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V+R +F Q +SRGIP S ++ V + RGT++TF D +IF + Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIG-VSSARGTKVTFLADTEIFETL-EY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D L K + A+L+ +++ + EK+ FYF GG+K ++ N Sbjct: 179 DFETLSKRLRELAFLNDKIRISIEDKRSGKEKFLE-----FYFEGGIKAFVDYITNNSKN 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 I +E + + V + W E + S+ N I T EGGTH +G + + Sbjct: 234 IQNEPYFIEGSCDDVI---VSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ K S+ DD ++S+ I EP+F GQTK KL + ++ VE Sbjct: 291 MSEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETI 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + D + N +E +L I + R RK R +K+A L LPGKLADC+ Sbjct: 351 VHDGLLRVVDDNLLEVDTILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK R+R +QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + E LRY K+IIM DADVDG+HI +LLLTFF++ M +LIE H+++ PP Sbjct: 471 SLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + Y +D+ K+ L + + K+ + R+KGLGEM +QL ET M+ R Sbjct: 531 LYKVKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + ++IN + + LMG + R +FI+ A + ++ Sbjct: 591 KMKLIKINDAI----QAEKIFVTLMGDDVEPRREFIEHNALDVVNLD 633 >gi|154496136|ref|ZP_02034832.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC 29799] gi|150274691|gb|EDN01755.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC 29799] Length = 649 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 243/654 (37%), Positives = 367/654 (56%), Gaps = 19/654 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + Y S I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY + Sbjct: 10 SATQVDHEYGGSEIQVLEGLEAVRKRPGMYIGSTSSSGLHHLVYEIVDNSIDEALAGYCD 69 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V++ ++V DNGRGIPV+ P+ LE++ T LHAGGKF Y++SGGLH Sbjct: 70 RIDVAILEGDIISVTDNGRGIPVDIQPQ-TGLPALEVVFTILHAGGKFGGGGYKVSGGLH 128 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS+ L V V + I KFSRG + + ++ GT + F+PDP++ Sbjct: 129 GVGASVVNALSEWLEVRVYKDGKIHEMKFSRGKVTQSMTIVGET-DRHGTEVVFKPDPEM 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D +D L + +A+L+ +K + E +++ Y+ GG++ ++ Sbjct: 188 FEDTV-YDYEILHTRMREEAFLNAGLKIVIQDRRPGME-----QEDTMYYEGGIREFVSF 241 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334 +N++ I + K + E A+ + + EI S+ N + T EGG HE+G Sbjct: 242 INKNKTPIHDGVIYMSGMKDDSI---AEIAMQYTDTYNEILVSFANNVHTPEGGMHETGF 298 Query: 335 RVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 + ALT + Y ++ K + +D ++SV + E +F GQTK KL + + Sbjct: 299 KQALTNVLNAYGKKMKILKDEEKVSGEDCREGLTAVISVKLTEAQFEGQTKAKLGNAHIR 358 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V + + + +L +NP +L+ + S R RK RE RKTA+ +P K Sbjct: 359 TLVSTLVSEKLEEFLEENPAVGKAILDKALTASRAREAARKARESVRRKTALGGAAMPDK 418 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC++ TEL+IVEGDSAGGSA Q R+ QA+LPL GK+LNV A ++K+ N + Sbjct: 419 LRDCNEVNPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGNDK 478 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ LRY KVIIM DADVDGAHI +LLLTFF++ M LIE ++ Sbjct: 479 LQPVITALGAGIGDEFDVSKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIENGYV 538 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T+G + A +E + ++ E + K++ISRFKGLGEM +L ET Sbjct: 539 YSAVPPLYKLTRGKTTRVAFSDEERDQVSAELRGDNPNAKVDISRFKGLGEMNPHELWET 598 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KRTL R+E++ + + LMG K + R +FI++ A + ++ Sbjct: 599 TMDPEKRTLRRIELDDAV----AADATFTILMGEKVEPRKEFIEKNAKYAVNLD 648 >gi|331693904|ref|YP_004330143.1| DNA gyrase subunit B [Pseudonocardia dioxanivorans CB1190] gi|326948593|gb|AEA22290.1| DNA gyrase, B subunit [Pseudonocardia dioxanivorans CB1190] Length = 660 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 248/667 (37%), Positives = 371/667 (55%), Gaps = 31/667 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGYA+ +E Sbjct: 4 EKKNGYSASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYADRVE 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G +TVVDNGRGIPV HP K +E++LT LHAGGKFD+ +Y +SGGLHGVG Sbjct: 64 VVLRPDGGVTVVDNGRGIPVGMHP-VEKKPAVEMVLTMLHAGGKFDSDSYAVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L V + +SQK++R +P ++ GT +TF DP IF Sbjct: 123 VSVVNALSSRLDVDIDTDGFHWSQKYTRSVPGPLVK--GAPTRATGTTVTFWADPDIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------EKEEFYFPGG 268 ++ + + Q A+L+ + ++ ++ F++P G Sbjct: 181 -TTYNVETVRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHYPNG 239 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 L+ ++ + + I ++ + E G +E A+ W + ++ NTI T EG Sbjct: 240 LEDFVAHLNKTKDPIHKKLVSFSGEAPGH---ALEVAMQWNSGYTESVYTFANTINTHEG 296 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G R ALT + +YA + ++ ++ DD+ I+SV ++EP+F GQTKT Sbjct: 297 GTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKT 356 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + + + V+ + + +NP EA ++ ++ ++ R+ RK RE V RK+A Sbjct: 357 KLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAARKARELVRRKSAG 416 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC +E++IVEGDSAGGSAK R+ QA+LP+RGKI+NV A Sbjct: 417 DIGGLPGKLADCRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKARI 476 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +++ N ++ ++ ALG ++ LRY K+++M DADVDG HI +LLLT ++ M Sbjct: 477 DRVLKNTEVQSIITALGTGIHDEFDLAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMR 536 Query: 565 DLIEQKHLFLISPPLFRITQGT---KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFK 618 L+E H+FL PPL++I G + +A+ + + ++ + GK + + R+K Sbjct: 537 PLVEHGHVFLAQPPLYKIKWGGRGAEPEFAYSDAERDGLIAAGRAAGKKLPKEEGVQRYK 596 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM A +L ET MD R LLRV ++ + + LMG + R FI A Sbjct: 597 GLGEMNAKELWETTMDPAHRVLLRVTLDD----AATADELFSVLMGEDVESRRSFITRNA 652 Query: 679 SFIDDVG 685 + + Sbjct: 653 KDVRFLD 659 >gi|194467407|ref|ZP_03073394.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23] gi|194454443|gb|EDX43340.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23] Length = 649 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 247/662 (37%), Positives = 375/662 (56%), Gaps = 20/662 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+ + I V ++ + +TV DNGRGIPV+ K KS LE + T LHAGGKF Y Sbjct: 62 ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206 ++SGGLHGVG SVVNALS EL V VARQ + F G S ++ E+ + GT Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+PDP+IF + ++ L + A+L+ +K ++ + F++ Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKE-----FHYE 235 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ Y++ E+++++ + ++ TVE ++ + + + ++ N I T Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 EGGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTK Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGVLKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +++ N +I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +I ++++ PPL+++ QG Y +E ++++ + K I R+KGLGEM Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A QL ET MD R LLRV+++ + LMGTK R FI++ A F+++ Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646 Query: 684 VG 685 + Sbjct: 647 LD 648 >gi|219684407|ref|ZP_03539351.1| DNA gyrase, B subunit [Borrelia garinii PBr] gi|219672396|gb|EED29449.1| DNA gyrase, B subunit [Borrelia garinii PBr] Length = 634 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 371/647 (57%), Gaps = 19/647 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY AS+I++L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + I+V ++ Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSVNGLHHLVYEVVDNSIDEALAGFCDKIDVIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV+DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVV Sbjct: 62 LDNTITVIDNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V V R IF Q FS+GIP S +E + GT++TF D +IF + Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSIM-GTKVTFLADSEIFETL-DY 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L K + A+L+ ++ + EK FYF GG+K+++ ++ Sbjct: 179 NFDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSK-----FYFEGGIKSFVDYLTKDSKA 233 Query: 283 ISSEIFTGKTE-KKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 SE + ++W ++ + I S+ N I T EGGTH G R LT+ Sbjct: 234 FQSESYYIDGFINDVIVNVGLKWTESYSDN---ILSFVNNINTREGGTHVMGFRSGLTKA 290 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + ++ K ++ DD ++SV + EP+F GQTK+KL + + ++ VE Sbjct: 291 MNEAFKNSKISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEII 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + + NP+E +LE I + R RK R +K A L LPGKLADC+ Sbjct: 351 VYEHLLEIINSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCAS 410 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ Sbjct: 411 KNPSEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIA 470 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +LG + LRY KVIIM DADVDG+HI +LLL FF++ M DLIE ++++ PP Sbjct: 471 SLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPP 530 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++ + Y +DE+ K+K L+ + + I + R+KGLGEM +QL ET MD ++R Sbjct: 531 LYKMKYDNRIYYFYDEKEKEKFLDSIESKNRNNIFLQRYKGLGEMNPTQLWETTMDPSRR 590 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + I+ + + + LMG + R +FI++ A + ++ Sbjct: 591 KMRLINIDDAI----EAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633 >gi|321401252|gb|ADW83037.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 251/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +S+ N + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ I++QK+ +GIP+SP+E K RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + AE + E F F GG+ ++++ Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNE-FQFSGGIVSFVEHIN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 475 RVLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S YA+ ++ K+++L+ G K+ I R+KGLGEM QL ET Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|330470839|ref|YP_004408582.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032] gi|328813810|gb|AEB47982.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032] Length = 648 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 237/652 (36%), Positives = 359/652 (55%), Gaps = 19/652 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ + I+V L Sbjct: 7 QQYGAESITVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEALAGHCDTIDVVL 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRG PV+ HPK K +E+ LT LHAGGKFD Y +SGGLHGVG+SV Sbjct: 67 LADGGVRVTDNGRGFPVDLHPKL-KKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVSV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS + V + + ++ Q++ P + + + ++ G+ ++F PDP +F Sbjct: 126 VNALSTRMAVEIHKDGFVWRQQYDHSKPSTLEK--GEPTDRTGSAVSFWPDPDVFET-TD 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD + + Q A+L+ + ++ + G + F + GG+ +++ ++S Sbjct: 183 FDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIADFVRHLNASKS 242 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + E++G ++E A+ W E + ++ N I T EGGTHE G R ALT Sbjct: 243 PMHKTVIEFGAEEEG---MSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTS 299 Query: 341 GIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + +Y + + + +D+ I+SV + P+F GQTKTKL + + V+ Sbjct: 300 VVNRYGADKKLLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRV 359 Query: 400 LRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 D +L +NP EA ++ + ++ ++ RK+ + +PGKLADC Sbjct: 360 CNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQS 419 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +E+FIVEGDSAGGSAKQ R+ QA+LP+RGKILNV A +++ N ++ L+ Sbjct: 420 TDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALIT 479 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + E LRY KV++M DADVDG HI +LLLT ++ M L+E H++L +PP Sbjct: 480 ALGTGIHDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPP 539 Query: 579 LFRITQGTK---SVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L++I K + YA+ + + + L + KK +I RFKGLGEM +L ET M Sbjct: 540 LYKIKWNKKGDDAQYAYSDRERDGLIALRQQKKPNAKPDDIQRFKGLGEMNYPELWETTM 599 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTL +V ++ + + LMG + R FIQ A + + Sbjct: 600 NPATRTLRQVTLDD----AATADELFSVLMGEDVEARRSFIQRNAKDVRFLD 647 >gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis ATCC 700338] gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis ATCC 700338] Length = 650 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 377/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV Sbjct: 12 AKEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEKDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTILHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V+V R I Q++ RG +S L ++ GT + F PDP+IF + Sbjct: 131 VVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ EN+ Sbjct: 190 VFDFDKLAKRIQELAFLNRGLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 I E G +VE A+ + + S+ N I T EGGTHE G R ALT Sbjct: 245 EAIFENPIYTDGELDGV---SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 302 RVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N A ELFIVEGDSAGGSAK R+R +QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y E Q+ + G+ K + R+KGLGEM QL ET Sbjct: 542 PPIYGVKVGSEIKEYIQPGANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 601 TMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 645 >gi|323341105|ref|ZP_08081353.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus ruminis ATCC 25644] gi|323091526|gb|EFZ34150.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus ruminis ATCC 25644] Length = 652 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 372/649 (57%), Gaps = 22/649 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE +AG+ + I V+++ Sbjct: 18 YDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFCDEINVTVEK 77 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV DNGRGIPV+ K + LE + T LHAGGKF Y++SGGLHGVG SVVN Sbjct: 78 DNSITVQDNGRGIPVDIQKK-TGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 136 Query: 164 ALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 ALS EL V V R ++ F G +P++ + + GTR+ F PDP IF + Sbjct: 137 ALSTELDVQVKREGDTNVYGIDFELGKVKNPMKVIGQCQEHEHGTRVHFCPDPDIFKETT 196 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D L + A+L+ +K + P KEEF++ GG+K Y++ + + Sbjct: 197 VYDIKVLTTRIRELAFLNKGLKITIEDKR-----PETPTKEEFHYAGGIKHYVEYLNKGK 251 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ + + E++ TVE A+ + ++ ++ N I T EGGTHESG + ALT Sbjct: 252 EVLFDDPIYVEGEQRNI---TVEVALQYTDDFHSNLLTFTNNIHTYEGGTHESGFKTALT 308 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + ++ +D+ ++S+ +P+F GQTKTKL + DA+ + Sbjct: 309 RVINDYARKAGILKENDDNLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARAVTD 368 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F ++++NP A +++E ++ +R + +K + LPGKLAD Sbjct: 369 KMFSETFSKFMLENPSVAKRIVEKGMLAAKARVAAKRAREVTRKKNGLEISNLPGKLADN 428 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I N++I L Sbjct: 429 TSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLDRILANEEIRSL 488 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + E Y K+IIMTDADVDGAHI +LLLT FY+ M +IE+ ++++ Sbjct: 489 FTALGTGFGQDFDVEKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIEKGYVYIAQ 548 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ QG Y +E + +L + K + R+KGLGEM A QL ET MD Sbjct: 549 PPLYQVRQGKMIRYIDSDEELKDVLGSLQPS--PKPVVQRYKGLGEMDAEQLWETTMDPE 606 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LLRV ++ ++ LMG + R +FI++ A+F++++ Sbjct: 607 KRRLLRVNLSD----AEEANSVFEMLMGDQVGPRRQFIEDNATFVNNLD 651 >gi|321401256|gb|ADW83039.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 601 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 250/653 (38%), Positives = 385/653 (58%), Gaps = 19/653 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 2 SQKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +S+ N + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGV Sbjct: 62 RISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L V V ++ I++QK+ +GIP+SP+E K RGT + F+PD IF Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + A+L+ + + +E + E F F GG+ ++++ Sbjct: 180 T-VDFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNE-FQFSGGIVSFVEHIN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 EN+ + I + + +++++ + E I + N I + GGTH G R A Sbjct: 238 ENKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAA 294 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 295 LTRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKG 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKL Sbjct: 355 IMQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 415 ADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEI 474 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV ALG ++ +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L Sbjct: 475 RVLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYL 534 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+ I G S YA+ ++ K+++L+ G K+ I R+KGLGEM QL ET Sbjct: 535 YVAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETT 591 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 592 MDPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|302520521|ref|ZP_07272863.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] gi|318057387|ref|ZP_07976110.1| DNA gyrase subunit B [Streptomyces sp. SA3_actG] gi|318079451|ref|ZP_07986783.1| DNA gyrase subunit B [Streptomyces sp. SA3_actF] gi|302429416|gb|EFL01232.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] Length = 718 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 255/724 (35%), Positives = 388/724 (53%), Gaps = 46/724 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIP------------------DSPAFANQSASD 42 M D + +G + + G+ D + A Sbjct: 1 MADSGNPNENNPSTPDEGGRSAVPEPGQSDVSRETSAAAEAEADAVSGDVSRETSSIAES 60 Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDA++I +LEGL+ VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ I+V++ Sbjct: 61 SYDANAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTIL 120 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V+DNGRGIPV P K +E++LT LHAGGKF Y +SGGLHGVG+SVV Sbjct: 121 PDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 179 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + V V +++Q++ RG+P++PL K + + GT +TF D +F + Sbjct: 180 NALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDVFET-TEY 237 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKE--------------IAEKYGIPEKEEFYFPGG 268 L + Q A+L+ + + +++ AE+ +++ GG Sbjct: 238 SFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVTYHYEGG 297 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + +++ + + + +VE A+ W + S+ NTI T EG Sbjct: 298 IVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANTIHTHEG 357 Query: 328 GTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G R ALT + KYA + ++ ++ DD+ I+SV + EP+F GQTKT Sbjct: 358 GTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQFEGQTKT 417 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + +A+ V+ + + + +NP EA+ ++ I + R+ RK R++ R+ + Sbjct: 418 KLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLTRRKGLL 477 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKL+DC N E+FIVEGDSAGGSAK R+ QA+LP+RGKILNV A Sbjct: 478 ETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARV 537 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +KI +NQ+I L+ A G + E LRY K+I+M DADVDG HI +LLLTF ++ M Sbjct: 538 DKILHNQEIQALISAFGAGVHDDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 597 Query: 565 DLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE--ISRFKGLG 621 L+E H++L PPL++I G V YA+ + + ++ +++GK E + RFKGLG Sbjct: 598 PLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAVQRFKGLG 657 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A +L+ T MD + R L +V ++ D + LMG + R +FIQ A + Sbjct: 658 EMDAEELRVTTMDQDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRQFIQRNAKDV 713 Query: 682 DDVG 685 + Sbjct: 714 RFLD 717 >gi|302543959|ref|ZP_07296301.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461577|gb|EFL24670.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653] Length = 676 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 258/676 (38%), Positives = 379/676 (56%), Gaps = 19/676 (2%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 S ++ IPD A A S YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 11 DSGNPIENITSIPDGEALAPPS----YDASAITVLEGLDAVRKRPGMYIGSTGERGLHHL 66 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT L Sbjct: 67 VQEVVDNSVDEAMAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 125 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P +PL K E Sbjct: 126 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGVPTAPLAKNE 185 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYG 256 GT +TF D IF + L + Q A+L+ + + ++E ++ G Sbjct: 186 ATEE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLSISLTDEREAHVDEEG 243 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-I 315 P ++++ GG+ ++ + + G + ++E A+ W + E + Sbjct: 244 KPLSVKYHYEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYSEGV 303 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373 S+ NTI T EGGTHE G R ALT I KYA + ++ ++ +D+ I+SV Sbjct: 304 YSFANTIHTHEGGTHEEGFRAALTYLINKYARDRKLLREKDDNLTGEDIREGLTAIISVK 363 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F GQTKTKL + +A+ V+ + + +L +NP EA ++ I+ + R+ R Sbjct: 364 LGEPQFEGQTKTKLGNTEAKTFVQKIVNEHLADWLDRNPNEAADIIRKGIQAATARVAAR 423 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R+ QA+LP+ Sbjct: 424 KARDLTRRKGLLETASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRDPQYQAILPI 483 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552 RGKILNV A +KI N ++ L+ A G + LRY K+I+M DADVDG HI Sbjct: 484 RGKILNVEKARVDKILQNNEVQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHIN 543 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK-- 609 +LLLTF ++ M L+E H+FL PPL++I G YA+ + + +++ ++ GK Sbjct: 544 TLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRI 603 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 + RFKGLGEM A +L+ T MD + R L +V ++ D + LMG + Sbjct: 604 KDDSVQRFKGLGEMNAEELRVTTMDLDSRVLGQVTLDD----AAQADDLFSVLMGEDVEA 659 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 660 RRSFIQRNAKDVRFLD 675 >gi|148543248|ref|YP_001270618.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016] gi|184152660|ref|YP_001841001.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112] gi|227364311|ref|ZP_03848404.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3] gi|325683510|ref|ZP_08163026.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri MM4-1A] gi|148530282|gb|ABQ82281.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016] gi|183224004|dbj|BAG24521.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112] gi|227070624|gb|EEI08954.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3] gi|324977860|gb|EGC14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri MM4-1A] Length = 649 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 247/662 (37%), Positives = 375/662 (56%), Gaps = 20/662 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + + YDAS I++L+GL+ VR RPGMYIG T + LHHL E++DN +DE Sbjct: 2 SNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+ + I V ++ + +TV DNGRGIPV+ K KS LE + T LHAGGKF Y Sbjct: 62 ALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQ-KETGKSALETVFTVLHAGGKFGGGGY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTR 206 ++SGGLHGVG SVVNALS EL V VARQ + F G S ++ E+ + GT Sbjct: 121 KVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGTT 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+PDP+IF + ++ L + A+L+ +K ++ + F++ Sbjct: 181 VHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKE-----FHYE 235 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ Y++ E+++++ + ++ TVE ++ + + + ++ N I T Sbjct: 236 GGIRHYVEYLNEDQNVLFDPPIYVEGKENDI---TVEVSLQYTDSYRSNLLTFTNNIHTY 292 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 EGGTHE+G ++ALTR I Y K ++ DD+ ++S+ +P+F GQTK Sbjct: 293 EGGTHETGFKMALTRVINDYGHKAGILKSNETLSGDDVREGLTAVVSIKHPDPQFEGQTK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + DA+ ++ F+ +L+++P EA +++E S+ R+ ++ RE +K+ Sbjct: 353 TKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSG 412 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A Sbjct: 413 LEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKAT 472 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +++ N +I L ALG + Y K+IIMTDADVDGAHI +LLLT FY+ M Sbjct: 473 LDRVLANDEIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFM 532 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +I ++++ PPL+++ QG Y +E ++++ + K I R+KGLGEM Sbjct: 533 KPMITHGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPS--PKPVIQRYKGLGEM 590 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A QL ET MD R LLRV+++ + LMGTK R FI++ A F+++ Sbjct: 591 DAEQLWETTMDPENRHLLRVKLDD----AEQADKIFPMLMGTKVGPRRDFIEQNAKFVEN 646 Query: 684 VG 685 + Sbjct: 647 LD 648 >gi|172039685|ref|YP_001799399.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109] gi|171850989|emb|CAQ03965.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109] Length = 699 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 250/703 (35%), Positives = 375/703 (53%), Gaps = 52/703 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 P + ++ +YDASSI ILEGLE VR RPGMYIG T E+ LHHL EV+ Sbjct: 8 PTVGAPEPQNTPAPHEHKPGDYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVV 67 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AGYA + V+L +G + V D+GRGIPVE HP T+++++T LHAGGK Sbjct: 68 DNSVDEAMAGYAKKVSVTLKEDGSVEVSDDGRGIPVEMHP--SGAPTVQVVMTQLHAGGK 125 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 FD+ +Y +SGGLHGVGISVVNALS + + R + Q+F +P + K + Sbjct: 126 FDSDSYAVSGGLHGVGISVVNALSTRVETRIVRDGFEWYQEFVNAVPQEL--VQGKKKRG 183 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------- 249 GT F PDP+IF F+ + K Q A+L+ + + ++ Sbjct: 184 SGTTQRFWPDPEIFET-VEFNFDTVAKRLQEMAFLNKGLTITLTDERPEAIEAEDPEEQL 242 Query: 250 -------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 E A+K P + +++P GLK Y+ + I I + Sbjct: 243 EDLTEQAEAPKSAEERQAEEEAKKKKGPRTKTYHYPEGLKDYVAFINRKKQPIHPTIVSF 302 Query: 291 KTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + + VE A+ W + + + ++ NTI T EGGTHE G R A+T I +YA Sbjct: 303 DAKGEDH---EVEVALQWNDGYQQSVHTFANTINTFEGGTHEEGFRAAMTSLINRYARDQ 359 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + ++ ++ DD+ ++SV + +P+F GQTKTKL + + + V+ A+ + + Sbjct: 360 KLLKEKDSNLTGDDVREGLAAVISVRVGDPQFEGQTKTKLGNTEIRGFVQRAINEHLSDW 419 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 L NP EA +++ + + R RK R+ V RK+A LPGKLADC +EL Sbjct: 420 LDANPAEAKVIVQKAVASAHARQAARKARDLVRRKSASDMGGLPGKLADCRSKDPIKSEL 479 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 ++VEGDSAGGSAK R+ QA+LPLRGKILNV A +++ N ++ ++ ALG Sbjct: 480 YVVEGDSAGGSAKSGRDSMYQAILPLRGKILNVEKARMDRVLKNAEVQAIITALGTGIHD 539 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 ++ LRY K+++M DADVDG HIA+LLLT ++ M L+E +++L PPL+++ G Sbjct: 540 EFDINKLRYHKIVLMADADVDGQHIATLLLTLLFRLMRPLVEGGYVYLAQPPLYKLKWGK 599 Query: 587 -KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLR 642 + YA + + + L++ + G+ I R+KGLGEM +L ET MD RTL + Sbjct: 600 GEPGYAFSDRERDEQLKKGLEEGRKIDTDDGIQRYKGLGEMNPKELWETTMDPTTRTLRQ 659 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V + + + + LMG R FI A + + Sbjct: 660 VSLED----AEAADELFSILMGDDVVARRSFITRNARDVRFLD 698 >gi|321401254|gb|ADW83038.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 251/652 (38%), Positives = 385/652 (59%), Gaps = 19/652 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +Y A I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ I Sbjct: 3 QKETSYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIR 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +S+ N + V DNGRGIPV+ HP ST+E+++T LHAGGKF+N Y++SGGLHGVG Sbjct: 63 ISILPNNIIEVKDNGRGIPVDIHP-DKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L V V ++ I++QK+ +GIP+SP+E K RGT + F+PD IF Sbjct: 122 VSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSE-RGTIVRFKPDATIFTT 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + A+L+ + + AE + E F F GG+ ++++ E Sbjct: 181 -VDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNE-FQFSGGIVSFVEHINE 238 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 N+ + I + + +++++ + E I + N I + GGTH G R AL Sbjct: 239 NKHPMHKVIHFERNKDDVLAEISIQYSETYTE---NIFCFTNNINNNLGGTHLEGFRAAL 295 Query: 339 TRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 TR + + + K + +D+ ++S+ I +P+F QTK KLV+ + + Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 ++ + + +NP K+LE I ++ R RK R+ RKT + LPGKLA Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS+ +EL++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI ++++I Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 LV ALG ++ +RY K++IMTDAD+DG+HI +LLLTFF++ M +IE+ +L+ Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+ I G S YA+ ++ K+++L+ G K+ I R+KGLGEM QL ET M Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNV---GTEKVVIQRYKGLGEMNPEQLWETTM 592 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + R +L+V+++ + + +++ N LMG + R +FI+ A+ + ++ Sbjct: 593 DPSNRVVLKVKLDDFV----EAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|311030250|ref|ZP_07708340.1| DNA topoisomerase IV subunit B [Bacillus sp. m3-13] Length = 655 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 236/650 (36%), Positives = 360/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE + GY + I V++ Sbjct: 7 EYNDDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEILDNSVDEALGGYGDHIIVTIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVKDKGRGMPTGMHKM--GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R ++ Q+F G +K N+ GT I F+PD IF + Sbjct: 125 NALSEWLTVTIKRDGIVYEQRFENGGKPVTTLEKIGTTNQTGTTIHFKPDTTIFSTTT-Y 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K + ++ + E F++ G++ ++ E + Sbjct: 184 NFETLCERLRESAFLLKGLKIELNDERNSVK-------EVFHYESGIEAFVTYLNEEKDS 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + + + G +++A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 237 LHNVV-SFEGAQNGI---EIDFAFQFNDGYSETILSFVNNVRTKDGGTHEAGAKTAMTRI 292 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 293 FNEYARKVNLLKEKDKNLDGSDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KLA 454 + + + ++L +NP ++ L++ I+ + R RK RE R RK KL Sbjct: 353 SVVSEHLAYFLEENPETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLT 412 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 E+++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 413 PAQSRNPQKNEIYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F+ Sbjct: 473 TIIHAIGGGVGPDFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVFI 532 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K V YA +E Q +++ + I R+KGLGEM A QL E Sbjct: 533 ALPPLYKVSKGTGKKEVLEYAWSDEELQGAIQKIGR----GYTIQRYKGLGEMNADQLWE 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ + RTL+RV I+ + + LMG K + R K+I+ +F Sbjct: 589 TTMNPDTRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIESHVAF 634 >gi|86606189|ref|YP_474952.1| DNA gyrase subunit B [Synechococcus sp. JA-3-3Ab] gi|86554731|gb|ABC99689.1| DNA gyrase, B subunit [Synechococcus sp. JA-3-3Ab] Length = 642 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 367/649 (56%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A I++LEGLE VR RPGMYIG T K LHHL EV+DN++DE +AGY N IEV+ Sbjct: 2 TENYGAEQIQVLEGLEAVRRRPGMYIGSTGPKGLHHLVYEVVDNSVDEALAGYCNEIEVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G ++V+DNGRGIPV+ HPK +S L ++T LHAGGKF Y++SGGLHGVG+S Sbjct: 62 LHPDGSVSVLDNGRGIPVDIHPK-TGQSALVTVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDPKIFGD 218 VVNALS+ L V R+ ++ Q+F RG + E + +RGT + F+PD ++ Sbjct: 121 VVNALSEWLEARVWREGKVYFQRFERGAVVGSLQSEPQPAGAQRRGTEVRFKPD-ELIFP 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + FD + L + AYL+ +K +S + P +E + F GG+K Y+ Sbjct: 180 EREFDYSLLAARLRELAYLNAGLKIIFSDLRR-----DPPHREVYQFAGGIKEYVAFINH 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +I + E+ G + + N I T EGGTH GL+ AL Sbjct: 235 EKTPIHPDIIYVRGERDGV-EVEAALQWCADVYTDTLIGFANNIRTTEGGTHLEGLKTAL 293 Query: 339 TRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T I A + ++ +++ IL+V + PEF GQTKTKL + + + V Sbjct: 294 TLTINSQARKLNKLKDSDSNLAGENVREGLTAILAVKVPNPEFEGQTKTKLGNTEVRGIV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + + + YL NP A ++E I+ R+ RE V RK+A+ LPGKLAD Sbjct: 354 QTLVSEALTEYLEFNPNVARGIVEKAIQSFNAAEAARRARELVRRKSALESSTLPGKLAD 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +E+++VEGDSAGGSAKQ R+R QAVLPLRGKILN+ A KI N +I Sbjct: 414 CSCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQA 473 Query: 516 LVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + ++ LRY ++I+MTDADVDG+HI +LLLTFFY+ L+EQ ++++ Sbjct: 474 MITALGLGVKGEEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYI 533 Query: 575 ISPPLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL++I G Y ++E K+++L + K I RFKGLGEM+ QL ET M Sbjct: 534 ACPPLYKIEWGRNNVRYCYNEAEKEQVLRSLPAN--TKYTIQRFKGLGEMMPEQLWETTM 591 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L ++ I + LMG R +FI+ ++ +D Sbjct: 592 NPATRVLKQITIED----AAEADRIFTILMGDAVGPRREFIEAHSAQLD 636 >gi|42782667|ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987] gi|217960999|ref|YP_002339567.1| DNA topoisomerase IV subunit B [Bacillus cereus AH187] gi|229140210|ref|ZP_04268768.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26] gi|42738593|gb|AAS42522.1| DNA topoisomerase IV, B subunit [Bacillus cereus ATCC 10987] gi|217067922|gb|ACJ82172.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH187] gi|228643296|gb|EEK99569.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26] Length = 654 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA ++ ++ ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|307295605|ref|ZP_07575441.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1] gi|306878644|gb|EFN09864.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum L-1] Length = 658 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 347/657 (52%), Positives = 460/657 (70%), Gaps = 10/657 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN S + YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A Sbjct: 7 AANSSTAAQYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV L+ LT+ DNGRGIPV+ HPKFP KS LE+ILTTLH+GGKF + Y SGGL Sbjct: 67 TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS V VAR +F Q F++G+P S LEK N+RGT ++F PD + Sbjct: 127 HGVGISVVNALSINTVVEVARNKELFRQSFTQGLPSSGLEKVGAAPNRRGTSVSFIPDTE 186 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG+ F +RL ++ +SKAYL V+ W C E+ P + F FPGGL +L+ Sbjct: 187 IFGE-QKFKPSRLYRLARSKAYLFAGVEIRWKCAPELIADD-TPAEAVFQFPGGLADHLK 244 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333 ++ +R +S F+G + G VEWA+AW + + YCNTI T +GGTHE+G Sbjct: 245 EQVGDRECATSAFFSGSQDFPD-AAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEAG 303 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LR AL +GI+ + EL K+A I +DD++ S+ +LSVFIR+P+F QTK +L S +A Sbjct: 304 LRAALVKGIRAFGELVGQKKAKDITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSPEAA 363 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 R VENA+RD FDHYL + LL +V++R +ERL+R++++EV RKTA RKLRLPG Sbjct: 364 RLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLRLPG 423 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS + G E+F+VEGDSAGGSAKQAR+R QA+LPLRGKILNVASA + KI NQ Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQ 483 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I D++ ALGC TR ++LRYE+++IMTDADVDGAHIA+LL+TFF+QEM +L+ + H Sbjct: 484 EIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+ G KS+YA D+ H+++IL K+ K+E+SRFKGLGEM QL+ET Sbjct: 544 LYLAQPPLYRLVAGGKSLYAKDDAHREEILS--KEFKGKKVEVSRFKGLGEMNPGQLRET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686 MD R+L+RV + D+ + ++ +++LMGT RF FIQE A+ +D+ + Sbjct: 602 TMDPKTRSLIRVTLPDDIEDRQQVRELVDRLMGTNPAHRFAFIQENAATVDEEAIDA 658 >gi|30263545|ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Ames] gi|47778193|ref|YP_020292.2| DNA topoisomerase IV subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49186397|ref|YP_029649.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Sterne] gi|65320876|ref|ZP_00393835.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bacillus anthracis str. A2012] gi|165871023|ref|ZP_02215674.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488] gi|167636468|ref|ZP_02394766.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442] gi|167640560|ref|ZP_02398822.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193] gi|170688415|ref|ZP_02879623.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465] gi|170708114|ref|ZP_02898561.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389] gi|177652461|ref|ZP_02934928.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174] gi|190565061|ref|ZP_03017982.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I] gi|227813571|ref|YP_002813580.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684] gi|228916227|ref|ZP_04079797.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228934869|ref|ZP_04097700.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229604304|ref|YP_002867790.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248] gi|254686164|ref|ZP_05150023.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. CNEVA-9066] gi|254726069|ref|ZP_05187851.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. A1055] gi|254738637|ref|ZP_05196340.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Western North America USA6153] gi|254744805|ref|ZP_05202483.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Kruger B] gi|254752955|ref|ZP_05204991.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Vollum] gi|254759227|ref|ZP_05211253.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Australia 94] gi|301055084|ref|YP_003793295.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI] gi|30258180|gb|AAP27408.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Ames] gi|47551898|gb|AAT32767.2| DNA topoisomerase IV, B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180324|gb|AAT55700.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Sterne] gi|164713234|gb|EDR18760.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488] gi|167511428|gb|EDR86812.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193] gi|167528127|gb|EDR90919.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442] gi|170126922|gb|EDS95802.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389] gi|170667585|gb|EDT18340.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465] gi|172082135|gb|EDT67202.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174] gi|190564378|gb|EDV18342.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I] gi|227007627|gb|ACP17370.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684] gi|228824769|gb|EEM70570.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843425|gb|EEM88503.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268712|gb|ACQ50349.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248] gi|300377253|gb|ADK06157.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis str. CI] Length = 654 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|295837751|ref|ZP_06824684.1| DNA gyrase subunit B [Streptomyces sp. SPB74] gi|197699827|gb|EDY46760.1| DNA gyrase subunit B [Streptomyces sp. SPB74] Length = 682 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 254/687 (36%), Positives = 381/687 (55%), Gaps = 28/687 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 + + + D + SA +YDA++I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 2 AAESEAGAVSGDVSRETSGSAETSYDANAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHA Sbjct: 62 EVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V I++Q++ RG P +PL + + Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVEVEVKTDGHIWTQQYERGAPTAPL-HQGEA 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--------- 250 + GT +TF D +F + L + Q A+L+ + + ++E Sbjct: 180 TEEHGTSVTFWADGDVFET-TEYSFETLARRFQEMAFLNKGLTIKLTDERESAKATVGAD 238 Query: 251 -----IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 AE+ +++ GG+ +++ + + + +VE A Sbjct: 239 SAEVVDAEEPPEARTVTYHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVA 298 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362 + W + S+ NTI T EGGTHE G R ALT + KYA + ++ ++ DD+ Sbjct: 299 MQWNAGYTEGVYSFANTIHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDI 358 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA+ ++ Sbjct: 359 REGLTAIISVKLGEPQFEGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKG 418 Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK Sbjct: 419 ISAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 478 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+ QA+LP+RGKILNV A +KI +NQ+I L+ A G + E LRY K+I+M Sbjct: 479 RDPMYQAILPIRGKILNVEKARVDKILHNQEIQALISAFGAGVHEDFDIEKLRYHKIILM 538 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G V YA+ + + + Sbjct: 539 ADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKIKWGKDDVDYAYSDRERDAL 598 Query: 601 LEEFKKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + +++GK E + RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 599 IALGRENGKRLREGAVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDD----AAQADDL 654 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FIQ A + + Sbjct: 655 FSVLMGEDVEARRQFIQRNAKDVRFLD 681 >gi|260426009|ref|ZP_05779988.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45] gi|260420501|gb|EEX13752.1| DNA topoisomerase IV, B subunit [Citreicella sp. SE45] Length = 652 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 348/650 (53%), Positives = 446/650 (68%), Gaps = 10/650 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IE Sbjct: 9 TETTTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIE 68 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + LT+ DNGRGIP++ HPKFP KS LE+IL TLHAGGKF YE SGGLHGVG Sbjct: 69 VELHEDYALTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYETSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALSD + V VAR +F Q+FSRGIPL +EK N+RGT +TF D +IF Sbjct: 129 ASVVNALSDSMVVQVARNKELFEQRFSRGIPLGGVEKIGAAPNRRGTTVTFHADEQIF-G 187 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F ARL KM +SKAYL V+ W K E P + F+FPGGL YL + Sbjct: 188 HHRFKPARLFKMVRSKAYLFSGVEIRW---KSAIEDGETPTEATFHFPGGLADYLSETMN 244 Query: 279 NRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335 S + + F G ++K G VEWAI W + I SYCNT+ T EGGTHE+G Sbjct: 245 GSSTYADKPFAGTVDFKEKFQTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGFW 304 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+ +GI+ Y EL N++A I DDL+ ++S FIREPEF GQTK +L + +AQR Sbjct: 305 SAILKGIRAYGELVNNRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRL 364 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VE A+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL D Sbjct: 365 VEGAVRDHFDNWLASDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTD 424 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ GTELFIVEGDSAGGSAK AR R QA+LPL+GKILNV A S K+ +N +I D Sbjct: 425 CTAKSREGTELFIVEGDSAGGSAKGARFRETQALLPLKGKILNVLGAASNKLTSNAEIRD 484 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L +ALG +++ +DLRYEK+IIMTDADVDGAHIASLL+TFFY +M LI+Q HL+L Sbjct: 485 LCEALGVGLGTKFSLDDLRYEKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDQGHLYLA 544 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+TQG + +Y D+ K++ + + GKGKI++ RFKGLGEM A LKET MD Sbjct: 545 CPPLYRLTQGARRIYVADDAEKEE-MLKKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDP 603 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L+RV I++D +T D + +LMG K + RF++IQE A F+ ++ Sbjct: 604 ATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVAELD 651 >gi|49478289|ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141939|ref|YP_084890.1| DNA topoisomerase IV subunit B [Bacillus cereus E33L] gi|196034146|ref|ZP_03101556.1| DNA topoisomerase IV, B subunit [Bacillus cereus W] gi|196038513|ref|ZP_03105822.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99] gi|218904724|ref|YP_002452558.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820] gi|228928649|ref|ZP_04091685.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947212|ref|ZP_04109506.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986686|ref|ZP_04146816.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092562|ref|ZP_04223718.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42] gi|229123114|ref|ZP_04252321.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201] gi|229157170|ref|ZP_04285250.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342] gi|49329845|gb|AAT60491.1| topoisomerase IV, subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975408|gb|AAU16958.1| topoisomerase IV, subunit B [Bacillus cereus E33L] gi|195993220|gb|EDX57178.1| DNA topoisomerase IV, B subunit [Bacillus cereus W] gi|196030921|gb|EDX69519.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99] gi|218535726|gb|ACK88124.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820] gi|228626234|gb|EEK82981.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342] gi|228660408|gb|EEL16041.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201] gi|228690849|gb|EEL44624.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42] gi|228773017|gb|EEM21453.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812459|gb|EEM58786.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830968|gb|EEM76569.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 654 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|297193291|ref|ZP_06910689.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486] gi|297151724|gb|EDY62302.2| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486] Length = 688 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 252/686 (36%), Positives = 379/686 (55%), Gaps = 27/686 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + P +PA N + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 9 ADSGNPNENTPSTPAGGNGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 68 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV HP + +E++LT LHA Sbjct: 69 EVVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIHP-VEKRPAVEVVLTVLHA 127 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS +L V + ++Q++ G+P +PLE+ E Sbjct: 128 GGKFGGGGYAVSGGLHGVGVSVVNALSYKLAVEIRTDGYRWTQEYKSGVPTAPLEQHEAT 187 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249 GT +TF D IF + L + Q A+L+ + + ++ Sbjct: 188 TE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATAGAE 245 Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 E + ++++ GG+ +++ + + + +VE A+ Sbjct: 246 TGQEPEDLEQPARTVKYHYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDRERMLSVEIAM 305 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + + S+ NTI T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 306 QWNSQYTEGVYSFANTIHTHEGGTHEEGFRSALTGLVNRYAREKKLLREKDDNLSGEDIR 365 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I Sbjct: 366 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHETLTDWFDRNPNEAADIIRKGI 425 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 426 QAQTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 485 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 486 NPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 545 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++ Sbjct: 546 DADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALV 605 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + K+ GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 606 DLGKRSGKRIKEDSIQRFKGLGEMNAEELRITTMDQDHRVLGQVTLDD----AAQADDLF 661 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 662 SVLMGEDVEARRSFIQRNAKDVRFLD 687 >gi|319939072|ref|ZP_08013436.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV] gi|319812122|gb|EFW08388.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV] Length = 649 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDKIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 HKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F + G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYRQRFEKGGKPVTSLEKIGKAPKSKTGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + ++ E +F++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVHLSLTDER-------TGESVDFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEEGG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGSDFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + + ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + +N LMG K R K+I++ F Sbjct: 591 LWETTMNPENRTLIRVTIDD----LARAERRVNVLMGDKVPPRRKWIEDNVKF 639 >gi|220923231|ref|YP_002498533.1| DNA topoisomerase IV subunit B [Methylobacterium nodulans ORS 2060] gi|219947838|gb|ACL58230.1| DNA topoisomerase IV, B subunit [Methylobacterium nodulans ORS 2060] Length = 684 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 396/690 (57%), Positives = 503/690 (72%), Gaps = 12/690 (1%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D + DLF + K + P + + YDAS+I +LEGLEPVR Sbjct: 1 MNDAARDLFGPGAKPAPVDPIAGPKRPK-PVAVPQPEPTPEAGYDASAIEVLEGLEPVRR 59 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKALHHLF+EVIDNAMDE +AG+A+ IEV L G LTV DNGRGIPV+ Sbjct: 60 RPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHASFIEVELAEGGILTVTDNGRGIPVDP 119 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVG+SVVNALSD L V VAR+ ++ Sbjct: 120 HPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGVSVVNALSDLLEVEVARKQILY 179 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FSRG+P LE+ V+N+RGT++ F PDP+IFG F+ RL KM +SKAYL G Sbjct: 180 RQTFSRGLPQGGLEQVGPVQNRRGTKVRFHPDPQIFGA-LTFEPRRLFKMARSKAYLFGG 238 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ W C + E E + FP GLK YL +++ + L++ +FTGK K G+H Sbjct: 239 VEIRWRCAPALLEGVANVPAEAVHRFPAGLKDYLAREIDGKELVTDGLFTGKITKPGSH- 297 Query: 300 GTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 G++EWA+AW ++ +SYCNT+ T EGGTHESGLR+AL RG++ +AE KR ++ Sbjct: 298 GSLEWAVAWLANDDGFSSSYCNTVPTPEGGTHESGLRIALLRGLRDHAERVGQVKRMQAV 357 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +DD+M + +LSVFIREPEF GQTK KL +L+A R VE A+RD FDH+L +P +A + Sbjct: 358 TTDDVMATCAAMLSVFIREPEFQGQTKDKLATLEASRIVEAAVRDAFDHWLAASPTQANR 417 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LL+WVI+R+EERLRRR+++EV RKTA RKLRLPGKLADCS+ A G+E+FIVEGDSAGGS Sbjct: 418 LLDWVIDRAEERLRRRQEKEVARKTATRKLRLPGKLADCSKAGAAGSEIFIVEGDSAGGS 477 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR+R+ QAVLPLRGKILNVASA +K+ NQ + DL QALGC T + YRE+DLRYEK Sbjct: 478 AKQARDRATQAVLPLRGKILNVASASRDKLGANQLLSDLTQALGCGTGAHYREDDLRYEK 537 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 VIIMTDADVDGAHIASLL+TFFY++M LIE+ HL+L PPL+R+TQG+KS YA D+ HK Sbjct: 538 VIIMTDADVDGAHIASLLITFFYRQMPRLIEKGHLYLAVPPLYRLTQGSKSAYARDDRHK 597 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++++ K+G K+EI RFKGLGEM+ QLKET MD KRTLLRV + + + + T D Sbjct: 598 EQLIKTVFKNG--KVEIGRFKGLGEMMPGQLKETTMDPAKRTLLRVAVLE--EAREATGD 653 Query: 658 SINKLMGTKADERFKFIQERASFID--DVG 685 ++ +LMG K + RF FI ERA+F D ++ Sbjct: 654 TVERLMGNKPEARFAFISERAAFADEAELD 683 >gi|302391744|ref|YP_003827564.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] gi|302203821|gb|ADL12499.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] Length = 637 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 251/647 (38%), Positives = 372/647 (57%), Gaps = 22/647 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A I++LEGLE VR RPGMYIG T K LHHL E +DN++DE +AG+ I+V + Sbjct: 8 DYNAEQIQVLEGLEAVRKRPGMYIGSTGTKGLHHLVWEAVDNSIDEFLAGHGEEIKVKIK 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 ++V D GRGIPVE HP +++LTTLHAGGKFD+S Y++SGGLHGVGISVV Sbjct: 68 EGSIISVEDQGRGIPVEVHP-DKKLPAAQLVLTTLHAGGKFDSSGYKVSGGLHGVGISVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L +T+ R ++Q++ +G+P++ EK GT+I F+PD IF + + Sbjct: 127 NALSEWLELTIWRNGYTYTQQYEKGVPVTEFEKSNSTTK-TGTKIEFKPDEDIFDNV-KY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L Q A+L+ +K + EK + + GGL+ ++ ++R L Sbjct: 185 KFDVLANRLQESAFLNKGLKISLVDTRPGLEKEVT-----YQYDGGLEAFIDYLNQDRDL 239 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + +I + E T+ VE A + N I S+ N I T +GG H +G + ALTR Sbjct: 240 LHDDIVYLEEEVDDTY---VEVAFQYNKSFNERIYSFANNINTHDGGYHLTGFKTALTRA 296 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 YA+ K + DL +++V + EP+F GQTK KL + + + VE A Sbjct: 297 FNNYAKDNNLLKKSDPKLTGRDLREGLTAVVNVKLTEPQFEGQTKAKLGNSEIRSVVEGA 356 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQ 458 + + + YL ++ A +++ +E + R +K RK + LPGKL+DCS Sbjct: 357 VYNYLNQYLPRHHDMAKEVINKALEAVKARKAAKKAKELTKRKGVLNNNSLPGKLSDCSS 416 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A KI NN +I ++ Sbjct: 417 RKSEESELYLVEGDSAGGSAKQGRNRDFQAILPLKGKILNVERARLNKIINNNEIAAIIT 476 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG ++ + LRY K+IIMTDADVDGAHI +L+LT FY+ M +LI + H+++ PP Sbjct: 477 ALGTGIGEEFNIDKLRYHKIIIMTDADVDGAHICTLILTLFYRYMPELIREGHVYVAQPP 536 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+++T Y + ++ QK L + + K+ I R+KGLGEM SQL ET M+ R Sbjct: 537 LYKVTYRGDEEYIYTDKQLQKYLADL---DRSKVSIQRYKGLGEMNPSQLWETTMNPENR 593 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L + ++++ ++ +LMG+KA R +FI A ++ Sbjct: 594 KLQEIMVDEE----READSIFTRLMGSKAKLRREFIMANADLASNLD 636 >gi|254453955|ref|ZP_05067392.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238] gi|198268361|gb|EDY92631.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238] Length = 703 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 347/670 (51%), Positives = 448/670 (66%), Gaps = 11/670 (1%) Query: 19 SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78 + + ++ + + + Q+ S+ YDASSI +LE +E VR+RPGMYIGG D++ALHH+ Sbjct: 41 NMTQPTRAEQTMANDLLSGQTPSN-YDASSIEVLEDMEHVRLRPGMYIGGKDDRALHHMV 99 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 +E++DN+MDE +AG+A IEV L NG +TV DNGRGIPV HPK PNKS LE+I TL+ Sbjct: 100 AEIVDNSMDEAVAGHATWIEVELHANGHVTVRDNGRGIPVGMHPKLPNKSALEVIFCTLN 159 Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198 AGGKF +Y+ SGGLHGVG SVVNALSD L V VA +F +FSRG+P +PL K Sbjct: 160 AGGKFSGDSYQTSGGLHGVGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGA 219 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 N+RGT +TF PDP+IFG ARL KM +SKAYL V+ W D E P Sbjct: 220 APNRRGTAVTFHPDPEIFGS-LELKPARLFKMARSKAYLFSGVEIRWKTDINDGE---TP 275 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEI 315 ++ F FPGGL YL L + S + F G + K G VEWAI W + I Sbjct: 276 QEATFKFPGGLADYLNETLAGATTYSDKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFI 335 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIR 375 SYCNT+ T EGGTHE G A+ +GIK Y E NK+A +I +DL A ++S FIR Sbjct: 336 QSYCNTVPTPEGGTHEQGFWAAVLKGIKSYGERVNNKKATNITREDLTTGAGALVSCFIR 395 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +PEF GQTK +L + DAQR V+ A+ D FD++L + A +L++++ RSEERLRR+++ Sbjct: 396 DPEFVGQTKDRLATTDAQRMVQLAVADHFDNWLAADTKSAGAILDFLVLRSEERLRRKQE 455 Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 +E +RKTA +KLRLPGKL DCS GTELFIVEGDSAGGSAK ARNR NQA+LPLRGK Sbjct: 456 KETSRKTATQKLRLPGKLTDCSSKTRDGTELFIVEGDSAGGSAKMARNRKNQALLPLRGK 515 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A S KI N +I DL QALG + +++ +DLRY+KVIIMTDADVDGAHIA+LL Sbjct: 516 ILNVLGAASSKIGTNSEISDLTQALGVQLGAKFNVDDLRYDKVIIMTDADVDGAHIAALL 575 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 +TFF+ +M +I+ HL+L PPLFR+TQG + Y DE K +L G GK+++S Sbjct: 576 MTFFFSQMRPMIDAGHLYLACPPLFRVTQGARREYCLDEAEKNAVLAR-GLGGSGKMDVS 634 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 RFKGLGEM A LKET MD R L+RV I++D +T D + +LMG K + RF++IQ Sbjct: 635 RFKGLGEMDAKDLKETTMDPTSRKLIRVSIDEDE--AGETADLVERLMGKKPEMRFQYIQ 692 Query: 676 ERASFIDDVG 685 E A F+ ++ Sbjct: 693 ENAKFVLELD 702 >gi|47570276|ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241] gi|47553067|gb|EAL11468.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241] Length = 654 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 AIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|118478841|ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al Hakam] gi|225865579|ref|YP_002750957.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102] gi|229185832|ref|ZP_04313005.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1] gi|118418066|gb|ABK86485.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al Hakam] gi|225790247|gb|ACO30464.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102] gi|228597544|gb|EEK55191.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1] Length = 654 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA ++ ++ ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|159043301|ref|YP_001532095.1| DNA topoisomerase IV subunit B [Dinoroseobacter shibae DFL 12] gi|157911061|gb|ABV92494.1| DNA topoisomerase IV, B subunit [Dinoroseobacter shibae DFL 12] Length = 654 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 347/659 (52%), Positives = 453/659 (68%), Gaps = 9/659 (1%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 D + A + YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE Sbjct: 2 ANDLLSGARADTAATYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+A IEV L NG ++V DNGRGIP + HPK P+KS LE+I TL+AGGKF +Y Sbjct: 62 AVAGHATWIEVELHANGHVSVRDNGRGIPTDPHPKTPDKSALEVIFCTLNAGGKFSGDSY 121 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 E SGGLHGVG SVVNALSD L V VAR +++ +FSRG+P L K N+RGT +T Sbjct: 122 ETSGGLHGVGSSVVNALSDHLRVEVARNRELYAMEFSRGVPQGKLAKIGAAPNRRGTAVT 181 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP+IFG ARL KM +SKAYL V+ W K + PE+ F+FPGG Sbjct: 182 FHPDPEIFGS-LALKPARLFKMARSKAYLFSGVEIRW---KTAIDDGDTPEEATFHFPGG 237 Query: 269 LKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDE 326 L YL L + + F+G +K G VEWAI W + I SYCNT+ T E Sbjct: 238 LSDYLNETLGQAATYADAPFSGTVSFEKFGRPGKVEWAINWTPARDGFIQSYCNTVPTPE 297 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GGTHE+G A+ +GIK Y EL N++A +I +DL+ A ++S FIREPEF GQTK + Sbjct: 298 GGTHEAGFWAAILKGIKAYGELVSNRKASTITREDLITGAGALVSCFIREPEFVGQTKDR 357 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L +++AQR VENA+RD FD++L + A +L++++ R+EERLRRR+++E RK+A ++ Sbjct: 358 LATVEAQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKR 417 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LRLPGKL DCS GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A S K Sbjct: 418 LRLPGKLVDCSATNRAGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSK 477 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + +NQ+I DL QALG S++ EDLRY+K+IIMTDADVDGAHIASLL+TFF+ +M + Sbjct: 478 LGSNQEISDLTQALGVGLGSKFNIEDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPM 537 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I+ HL+L PPLFR+TQG K VY DE + LE+ GKGKI++SRFKGLGEM A Sbjct: 538 IDAGHLYLACPPLFRLTQGAKRVYCLDEAERDAWLEK-GLGGKGKIDVSRFKGLGEMDAK 596 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LK+T M+ R L+RV I++D +T D + +LMG K ++RF++IQE A F++++ Sbjct: 597 DLKDTTMNPETRKLIRVSIDEDE--PGETGDLVERLMGKKPEKRFEYIQENARFVEELD 653 >gi|196044488|ref|ZP_03111723.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108] gi|206975544|ref|ZP_03236457.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97] gi|229197705|ref|ZP_04324425.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293] gi|196024523|gb|EDX63195.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108] gi|206746446|gb|EDZ57840.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97] gi|228585782|gb|EEK43880.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293] gi|324327495|gb|ADY22755.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 654 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 362/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA ++ ++ ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|322373420|ref|ZP_08047956.1| DNA gyrase, B subunit [Streptococcus sp. C150] gi|321278462|gb|EFX55531.1| DNA gyrase, B subunit [Streptococcus sp. C150] Length = 650 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 257/651 (39%), Positives = 375/651 (57%), Gaps = 22/651 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEPDNSITVVDDGRGIPVGIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q++ RG+ + L GT + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLAIIGDTEKH-GTTVHFTPDPEIFQ 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD +L K Q A+L+ ++ + +E E +++ +++ GG+ +Y++ Sbjct: 187 ETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLE-----QEKHYHYEGGITSYVKYIN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 EN+ +I E E G +VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 ENKDVIFDEPIYTDGEMDGI---SVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + + ++ DD+ I+SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYARQNKILKDKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGAEFDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPILEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PP++ + G++ Y ++E K + E G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDHQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG K + R +FI+E A + Sbjct: 599 ETTMDPVNRLMARVSVDD----AAEADKIFDMLMGDKVEPRREFIEENAVY 645 >gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118] gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118] gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713] gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 652 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 369/656 (56%), Gaps = 22/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A+ Sbjct: 11 QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFADE 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+++ + +TV DNGRGIPV+ K + LE + T LHAGGKF Y++SGGLHG Sbjct: 71 INVTVEEDNSITVKDNGRGIPVDIQKK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDP 213 VG SVVNALS L V V R ++ F G + + K GT + F+PDP Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + +D L K + A+L+ +K + P EEF++ GG+K Y+ Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKR-----QEEPTHEEFHYAGGIKHYI 244 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + +I E + E+ G TVE A+ + + + + S+ N I T EGGTHES Sbjct: 245 EFLNKGKEVIFPEPIYVEGEQNGI---TVEVALQYTNDFHSNLLSFTNNIHTYEGGTHES 301 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR I Y + + ++ +D+ ++S+ P+F GQTKTKL + Sbjct: 302 GFKTALTRVINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNS 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 DA++ + + F+ ++++NP A +++E ++ +R + +K + L Sbjct: 362 DARKVTDKLFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I Sbjct: 422 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILA 481 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I L ALG ++ Y K+IIMTDADVDGAHI +LLLT Y+ M +++ Sbjct: 482 NEEIRSLFTALGTGFGEEFDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDA 541 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ QG Y +E +L K I R+KGLGEM A QL Sbjct: 542 GYVYIAQPPLYQVRQGKMIKYIDSDEELNDVLGSLPPS--PKPVIQRYKGLGEMDAEQLW 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LLRVE++ ++ + LMG R +FI++ A+F++++ Sbjct: 600 ETTMNPENRRLLRVELSD----AEEANEVFEMLMGDHVGPRRQFIEDNATFVNNLD 651 >gi|307708545|ref|ZP_07645010.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261] gi|307615461|gb|EFN94669.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261] Length = 647 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + ++ E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDER-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++ K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQLGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741] gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741] Length = 652 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 369/656 (56%), Gaps = 22/656 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + YDAS I++LEGLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A+ Sbjct: 11 QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFADE 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+++ + +TV DNGRGIPV+ K + LE + T LHAGGKF Y++SGGLHG Sbjct: 71 INVTVEEDNSITVKDNGRGIPVDIQKK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129 Query: 157 VGISVVNALSDELHVTVAR--QNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDP 213 VG SVVNALS L V V R ++ F G + + K GT + F+PDP Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF + +D L K + A+L+ +K + P EEF++ GG+K Y+ Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKR-----QEEPTHEEFHYAGGIKHYI 244 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + +I E + E+ G TVE A+ + + + + S+ N I T EGGTHES Sbjct: 245 EFLNKGKEVIFPEPIYVEGEQNGI---TVEVALQYTNDFHSNLLSFTNNIHTYEGGTHES 301 Query: 333 GLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR I Y + + ++ +D+ ++S+ P+F GQTKTKL + Sbjct: 302 GFKTALTRVINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNS 361 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRL 449 DA++ + + F+ ++++NP A +++E ++ +R + +K + L Sbjct: 362 DARKVTDKLFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNL 421 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLAD + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I Sbjct: 422 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILA 481 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I L ALG ++ Y K+IIMTDADVDGAHI +LLLT Y+ M +++ Sbjct: 482 NEEIRSLFTALGTGFGEEFDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDA 541 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++++ PPL+++ QG Y +E +L K I R+KGLGEM A QL Sbjct: 542 GYVYIAQPPLYQVRQGKMIKYIDSDEELNDVLGSLPSS--PKPVIQRYKGLGEMDAEQLW 599 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R LLRVE++ ++ + LMG R +FI++ A+F++++ Sbjct: 600 ETTMNPENRRLLRVELSD----AEEANEVFEMLMGDHVGPRRQFIEDNATFVNNLD 651 >gi|240047186|ref|YP_002960574.1| DNA gyrase subunit B [Mycoplasma conjunctivae HRC/581] gi|239984758|emb|CAT04732.1| DNA gyrase subunit B [Mycoplasma conjunctivae] Length = 640 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 364/653 (55%), Gaps = 22/653 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + NY ASSI+ LEGLEPVR RPGMYIGGT + LHHL E++DNA+DE +AG+AN I+V Sbjct: 2 SQKNYSASSIQTLEGLEPVRKRPGMYIGGTGIQPLHHLIWEIVDNAVDEALAGFANQIDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G++ V DNGRGIP + HPK S E++LT LHAGGKFD S+Y++SGGLHGVG Sbjct: 62 VITKDGYVQVSDNGRGIPTDIHPKH-GVSAAEVVLTILHAGGKFDGSSYKVSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFG 217 SVVNALS L V + R ++ Q+F G K N+ GT I F PD I Sbjct: 121 SVVNALSKHLQVWIKRDGKLYFQEFRDGGQKVDNLKVIDSVSENQTGTTIKFIPDFTIMD 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + + AYL+ +K + +K F F GG+ Y+ Sbjct: 181 KN-EFRLDIIQDRLKQTAYLTKGLKFTIDDQRTNFQKT-------FLFEGGIFDYISELS 232 Query: 278 ENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + + EI + E + VE A+ + E+ E+ SY N I EGGTHE+GL Sbjct: 233 KGYEHVHDEIIYVEDELSHNENHIKVEVALRYVNEDRSELLSYTNNIYNREGGTHEAGLF 292 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 AL+R + YA + + + +D+ ++S+ +P F GQTK KL S + + Sbjct: 293 DALSRILNNYAFENKFFKNENEKFSKEDIKDGLFAVISIKHSDPIFEGQTKGKLNSKEVR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 + + F+ +LV+NP +A K++E + + R RE RK+ LPGK Sbjct: 353 QITNKVFSEVFERFLVENPEQARKIIERNLISQKARKAAESAREAVKRKSPFDVSSLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ N++ Sbjct: 413 LADCSVKNAQMAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRTNLEKVLKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I+ L+ A G ++ +RY K+IIMTDAD DG+HI +LLLTF Y+ LIE + Sbjct: 473 ILSLITAFGTGIGPEFNINKVRYHKIIIMTDADSDGSHIRTLLLTFLYRYFRPLIEYGLI 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I+ K VYA+ ++ K +I+ + ++ K+ I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKISANKKVVYAYSDKQKDEIIAKEFENN--KVTIQRYKGLGEMNPDQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R + +V+I+ LMG + R FI+E A ++ ++ Sbjct: 591 MDPTTRKMYQVQIHDAF----IASQVFEALMGEEVQPRKVFIEENARYVKNLD 639 >gi|114767592|ref|ZP_01446327.1| DNA topoisomerase IV subunit B [Pelagibaca bermudensis HTCC2601] gi|114540370|gb|EAU43459.1| DNA topoisomerase IV subunit B [Roseovarius sp. HTCC2601] Length = 652 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 346/650 (53%), Positives = 450/650 (69%), Gaps = 10/650 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN IE Sbjct: 9 TDTPDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANRIE 68 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L G+ +T+ DNGRGIP++ HPKFP KS LE+IL TLHAGGKF YE SGGLHGVG Sbjct: 69 VELHGDYAVTIRDNGRGIPIDPHPKFPGKSALEVILCTLHAGGKFSGKAYETSGGLHGVG 128 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALSD + V VAR +F Q+FSRGIP +EK N+RGT +TF D +IFG Sbjct: 129 ASVVNALSDSMVVQVARNKELFEQRFSRGIPQGGVEKVGAAPNRRGTTVTFHADEQIFGS 188 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F ARL KM +SKAYL V+ W K + P + F+FPGGL YL L Sbjct: 189 -HRFKPARLFKMVRSKAYLFSGVEIRW---KSAIDDNETPLEATFHFPGGLSDYLTETLG 244 Query: 279 NRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335 S S + F G ++K G VEWAI+W + I SYCNT+ T EGGTHE+G Sbjct: 245 TASTYSEKPFAGTVDFKEKFNTPGKVEWAISWTPSRDGFIQSYCNTVPTPEGGTHEAGFW 304 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+ +GI+ Y EL N++A I DDL+ ++S FIREPEF GQTK +L + +AQR Sbjct: 305 AAILKGIRAYGELVNNRKASQITRDDLITGGCALVSCFIREPEFVGQTKDRLATTEAQRL 364 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VE A+RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL D Sbjct: 365 VEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLTD 424 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ GTELFIVEGDSAGGSAK AR R +QA+LPL+GKILNV A S K+ +N +I D Sbjct: 425 CTNKNREGTELFIVEGDSAGGSAKGARFRESQALLPLKGKILNVLGAASNKLTSNAEIRD 484 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L +ALG +++ +DLRYEK+IIMTDADVDGAHIA+LL+TFFY +M LI+ HL++ Sbjct: 485 LCEALGVGLGTKFNVDDLRYEKIIIMTDADVDGAHIAALLMTFFYTQMRPLIDGGHLYMA 544 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+TQG + +Y D+ K++ + + GKGKI++ RFKGLGEM A LKET MD Sbjct: 545 CPPLYRLTQGARRIYVADDAEKEE-MLKKGLGGKGKIDVQRFKGLGEMDAKDLKETTMDP 603 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L+RV I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 604 ATRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYIQENARFVEELD 651 >gi|321311453|ref|YP_004203740.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5] gi|291484420|dbj|BAI85495.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. natto BEST195] gi|320017727|gb|ADV92713.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5] Length = 655 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 370/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ + I V + Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ Q+F G P++ LEK K + GT F+PDP +F Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ + E FY+ G++ ++ E + Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQHEVFYYENGIEAFVAYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ SE+ + + E H V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 VL-SEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 353 DAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + +D+ Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|256389238|ref|YP_003110802.1| DNA gyrase subunit B [Catenulispora acidiphila DSM 44928] gi|256355464|gb|ACU68961.1| DNA gyrase, B subunit [Catenulispora acidiphila DSM 44928] Length = 661 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 248/664 (37%), Positives = 370/664 (55%), Gaps = 17/664 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + S Y+A SI +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE + Sbjct: 5 EPTGGSTPSLDGIYNADSISVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEAM 64 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYA+ IEV L +G + VVDNGRGIPV + K KS LE+++T LHAGGKF + Y++ Sbjct: 65 AGYADTIEVWLLADGGVKVVDNGRGIPVGINTK-TGKSALEVVMTILHAGGKFGDGGYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS + V V +++Q + G+P + ++K + GT F Sbjct: 124 SGGLHGVGVSVVNALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAAD-TGTSTIFW 182 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGL 269 D IF + L + Q A+L+ + + ++ E ++ G +++ GG+ Sbjct: 183 ADVDIFETTV-YSFETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGI 241 Query: 270 KTYLQTKLENR-SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 +++ + + + + E K E A+ W + I ++ N I T G Sbjct: 242 ADFVRHINSRKGEPVHPNVIDFEGEDKD-RTLAAEIALQWNSQYSESIYTFANNINTHGG 300 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G R ALT I KYA + ++ ++ +D+ I+SV + EP+F GQTK Sbjct: 301 GTHEEGFRAALTTLINKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKD 360 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + +A+ V+ + + +L +NP EA +++ I+ S R+ RK RE+ R+ + Sbjct: 361 KLGNPEAKTFVQRLVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLL 420 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKL+DC N TE+FIVEGDSAGGSA+ R+ QA+LP+RGKILNV A Sbjct: 421 ESSSLPGKLSDCQSNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARI 480 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +K+ N ++ L+ ALG + LRY K+I+M DADVDGAHI +LLLT ++ M Sbjct: 481 DKVLQNTEVQALISALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMK 540 Query: 565 DLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKI--EISRFKGLG 621 L+E H++L +PPL+++ YA+ + + ++LE GK + + RFKGLG Sbjct: 541 PLVEAGHVYLAAPPLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLG 600 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A +L+ T MD R L +V ++ D + LMG + R FIQ A + Sbjct: 601 EMNAEELRITTMDREHRILRQVTLDD----AAQADDLFSVLMGEDVEARRNFIQRNAKDV 656 Query: 682 DDVG 685 + Sbjct: 657 RFLD 660 >gi|5817861|gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholeplasma laidlawii] Length = 615 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 248/631 (39%), Positives = 376/631 (59%), Gaps = 20/631 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y A +I+ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ Sbjct: 2 PNNNNSHYTADNIQILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALCGYADE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I + + + V DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHG Sbjct: 62 ITIEILKGEVIRVTDNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVN LS+ V + + TI+ QK+ RGIP L+ K +K GT I+F+ DP IF Sbjct: 121 VGASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ L Q A+L+ +K D+ + + E F++ GG+ Y++ Sbjct: 180 TETVIYNYETLRTRIQQLAFLNKGLKLNLIDDR-----FEENKSESFHYEGGITEYVKFL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 +++S I ++I E+ G TVE A+ + + + N I T EGG HE G + Sbjct: 235 NQSKSKIHNDIIYIDKEQDGI---TVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFK 291 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +AL+ I KYA+ + K+ SI +D I+SV EP+F GQTKTKL + + + Sbjct: 292 MALSAVISKYADDLKMKKDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAI 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 + + +L++NP +A ++E V+ + R+ RK ++ RK+ + L KLA Sbjct: 352 TSQITSEAIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC +E++IVEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I+ Sbjct: 412 DCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIV 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +L+QA+G ++ RY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ Sbjct: 472 NLIQAMGTGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYA 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++I+ G Y ++E+ ++L+ + K I R+KGLGEM A QL +T MD Sbjct: 532 AQPPLYKISWGRNFQYRYNEQELNELLKTIE----TKPSIQRYKGLGEMDAEQLWDTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 KRTLL++++ + + + LMG Sbjct: 588 PAKRTLLQIKLEDAI----EADQVFSMLMGE 614 >gi|323137127|ref|ZP_08072206.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242] gi|322397485|gb|EFY00008.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242] Length = 671 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 369/671 (54%), Positives = 493/671 (73%), Gaps = 9/671 (1%) Query: 19 SSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 +++ G +PA + S Y A+SI +LEGLEPVR RPGMYIGGTDE A+HH Sbjct: 2 ATKPDLFGGAPRKAPASKPAAKSGPVEYSAASIEVLEGLEPVRRRPGMYIGGTDETAMHH 61 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 LF+EV+DNAMDE +AG+A IEV+L+ G+LTV DNGRGIPV HPK +KS LE+++T Sbjct: 62 LFAEVLDNAMDEAVAGHATFIEVTLEPGGWLTVTDNGRGIPVGPHPKMKDKSALEVVMTV 121 Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196 LHAGGKFD+ Y+ SGGLHGVG+SVVNALS+++ V VA + ++ +FSRG+PL LE+ Sbjct: 122 LHAGGKFDSGAYQTSGGLHGVGVSVVNALSEKVEVEVAIEQQLYRMEFSRGLPLGKLERL 181 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KY 255 KV N+RGT++ F+PD +IFG+ A + ARL +M++SKAYL G V+ W CD + E Sbjct: 182 GKVHNRRGTKVRFKPDAQIFGESAHWKPARLFRMSRSKAYLFGGVEIRWRCDPSLIEPGS 241 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPE 314 P FPGGLK YL ++ + +++ + FTGK ++G H G++EWA++W E++ Sbjct: 242 DTPADAVLRFPGGLKDYLAREVHGKEVVTDQPFTGKVTREGGH-GSLEWAVSWLPEDDGF 300 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVF 373 + SYCNT+ T +GGTHE+G R+AL + +K +A+ KRA + DDLM + ++SVF Sbjct: 301 VHSYCNTVPTPDGGTHEAGFRLALLKALKDHADRVGQTKRAKDVTGDDLMGQSAAMISVF 360 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 IREPEF GQ K++L+S++A R VE+ +RD FDH+L P +A KLL++ +ER+EERLRRR Sbjct: 361 IREPEFQGQNKSRLMSVEASRIVESTVRDAFDHWLAAAPTQANKLLDFAVERAEERLRRR 420 Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493 ++++ RKTA RKLRLPGKL DC+ N A G+ELFIVEGDSAGGSAK+ARNR+ QAVLPLR Sbjct: 421 AEKDIARKTATRKLRLPGKLVDCTNNSAQGSELFIVEGDSAGGSAKEARNRATQAVLPLR 480 Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIAS 553 GKILNVASA +K+ NQQ+ DL QALGC + YREE+LRY+KVI+MTDADVDGAHIAS Sbjct: 481 GKILNVASATKDKLLANQQLADLTQALGCGLGAHYREEELRYDKVIVMTDADVDGAHIAS 540 Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 LL+TFFY++M LIE+ HL+L PPL+++TQG K+VYA D +H+ +++ GKGKIE Sbjct: 541 LLITFFYRQMPKLIEKGHLYLAQPPLYKLTQGPKTVYARDNDHRDELIRTVL-TGKGKIE 599 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 SRFKGLGEM A+QLKET MD KRTLL+V I ++T D + +LMG K + RF F Sbjct: 600 TSRFKGLGEMSAAQLKETTMDPTKRTLLKVVIEG--EDREETADCVERLMGNKPEARFAF 657 Query: 674 IQERASFIDDV 684 IQE+A+F ++ Sbjct: 658 IQEKAAFAVEL 668 >gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr. CH1] gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 649 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 255/658 (38%), Positives = 382/658 (58%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + S YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q+++RG ++ L+ + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ + + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGME-----QSKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E + TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKEVIFDNPIYTDGEMEDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPVETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y ++ Q+ L + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGADQEIKLQEALARYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|12044853|ref|NP_072663.1| DNA gyrase subunit B [Mycoplasma genitalium G37] gi|255660024|ref|ZP_05405433.1| DNA gyrase subunit B [Mycoplasma genitalium G37] gi|1346242|sp|P47249|GYRB_MYCGE RecName: Full=DNA gyrase subunit B gi|497647|gb|AAA57071.1| DNA gyrase subunit B [Mycoplasma genitalium] gi|1045671|gb|AAC71219.1| DNA gyrase, B subunit [Mycoplasma genitalium G37] gi|166078727|gb|ABY79345.1| DNA gyrase, B subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 650 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 250/664 (37%), Positives = 382/664 (57%), Gaps = 28/664 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ YD+SSI++LEGLE VR RPGMYIG T E+ LHH+ E++DN++DE + G+A Sbjct: 1 MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFA 60 Query: 95 NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + ++++L + F+T V D+GRGIPV+ HPK N+ST+E + T LHAGGKFDN +Y++SGG Sbjct: 61 SFVKLTL-EDNFVTRVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS V V RQN + FS G + L ++ + GT + F PD Sbjct: 119 LHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPD 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + + ++ Q A+L+ ++ + +++ P+ + + GGL Y Sbjct: 179 FSVMEKS-DYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQ-----NPQSFSWKYDGGLVEY 232 Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 + + + +E+ + + + VE A + + I S+CN I T Sbjct: 233 IHHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382 EGGTH G R AL + I ++A + + I DD+ I+S+ P++ GQ Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KL + + + V + + + F+ ++++NP EA ++ + E R R ++ RE RK Sbjct: 353 TKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + LPGKLADC+ +EL+IVEGDSAGG+AK R+R QA+LPLRGKILNV Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + E+I NN +I LV A+GC + + E LRY K++IMTDADVDGAHI +LLLTFF++ Sbjct: 473 SNFEQIFNNAEISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 MY L+EQ ++F+ PPL++++ K +Y H + ++ + + K + R+KGLG Sbjct: 533 FMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQ---NPNVKFGLQRYKGLG 589 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A QL ET MD RTLL+V + + + LMG + R +FI++ A + Sbjct: 590 EMDALQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREFIEKNARSV 645 Query: 682 DDVG 685 ++ Sbjct: 646 KNID 649 >gi|73916372|gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916374|gb|AAZ93055.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + VYA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|50812242|ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221309697|ref|ZP_03591544.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221314019|ref|ZP_03595824.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318941|ref|ZP_03600235.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi|221323215|ref|ZP_03604509.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. SMY] gi|3914289|sp|Q59192|PARE_BACSU RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|2558946|gb|AAB81614.1| ParE [Bacillus subtilis] gi|32468765|emb|CAB13692.2| subunit B of DNA topoisomerase IV [Bacillus subtilis subsp. subtilis str. 168] Length = 655 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 371/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ + I V + Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ Q+F G P++ LEK K + GT F+PDP +F Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ ++E FY+ G++ ++ E + Sbjct: 184 YNFETLSERLRESAFLLKGLKIELIDER-------NDQREVFYYENGIEAFVAYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ SE+ + + E H V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 VL-SEVVSFEGE---HHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 353 DAIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 413 TPAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + +D+ Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 473 NTIIHAIGGGVGADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|48478486|ref|YP_024192.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790] gi|48431134|gb|AAT43999.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790] Length = 646 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 257/663 (38%), Positives = 383/663 (57%), Gaps = 38/663 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D Y+AS I+ILEGL+ VR PGMYIG T E+ LHH+ EVIDN++DE +AG+ + I + + Sbjct: 2 DEYNASQIQILEGLKAVRQTPGMYIGNTSEEGLHHMVYEVIDNSIDESMAGFCSNIYIII 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V D+GRGIPV+ HPK+ + LEI+LT LH+G KFD + Y+++GGLHGVG+ V Sbjct: 62 YKDGSISVEDDGRGIPVDMHPKY-KRPGLEIVLTELHSGAKFDKNVYKVTGGLHGVGVHV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-----------GTRITFR 210 VNALSD L V + + ++ +KF RG+P++ +E+ + + GT I F Sbjct: 121 VNALSDYLEAIVKKNDKLYIEKFERGLPVTKMEELDYIMASTIKDVKIKLANHGTIIKFH 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF + F + + A+L+ +V ++ +KE ++F GGL Sbjct: 181 PDPQIFDVR-DFSYEIIAGRCRQLAFLNPQVTITVEDER-------TSKKETYHFTGGLS 232 Query: 271 TYLQTKLENRSLISSEIFTGKTE-----KKGTHRGTVEWAIAW-CEENPEITSYCNTILT 324 +++ N+ + + TE + ++E+A + + + + S+ N I T Sbjct: 233 EFVKYISSNKDPVYKDPIYYSTEIEKEVHNEIRKYSLEFAFLYVTDSSKIVESFANNIRT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GTH +G L+R I Y + + ++I DD + + V + P+F GQTK Sbjct: 293 IYDGTHVTGFYTGLSRAIIDYIKSKNLSK-LNITGDDTRDGLIAAIHVKLMRPQFEGQTK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443 KL + + + V +A Y P+ A + + VI +E R R Q+E+ ++ + Sbjct: 352 EKLGNSEIKSIVASATEMYLKSYFESYPVTADAIAKRVILSAEIREASRSQKELIKRKSA 411 Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 LPGKLADCS + TEL+IVEGDSAGGSAKQARNR QA+LPLRGKILNV A Sbjct: 412 LSSGSSLPGKLADCSSDDPAKTELYIVEGDSAGGSAKQARNREFQAILPLRGKILNVEKA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 G K+ N++I +L+ A+G + + E+ LRY+K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 472 GDNKVLVNEEIKNLITAIGSGIKENFDEKKLRYDKIIIMTDADVDGAHIRTLLLTFFYRF 531 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 M LIE H++ PPL+RI +GT Y + ++ K ++L++ I RFKGLGE Sbjct: 532 MRPLIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLLKKLGNA-----TIQRFKGLGE 586 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M QL +T M+ KR ++ V I + + N LMG K + R KFI+E A F+ Sbjct: 587 MNPEQLWDTTMNPEKRRIVMVTIEDAMY----ADELFNILMGEKVEPRRKFIEENAKFVK 642 Query: 683 DVG 685 ++ Sbjct: 643 NLD 645 >gi|288556234|ref|YP_003428169.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4] gi|288547394|gb|ADC51277.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4] Length = 656 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 237/650 (36%), Positives = 362/650 (55%), Gaps = 33/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ + I+V++ Sbjct: 8 DYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGSYIKVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+PV H K T EIILT LHAGGKF Y SGGLHGVG SVV Sbjct: 68 RDNSISVTDEGRGMPVGMHK--LGKPTPEIILTVLHAGGKFGQGGYATSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V + R T++ Q+F G +K+ K GT I F+PDP IF + Sbjct: 126 NALSEWLVVEIKRDGTVYKQRFENGGKAVTTLEKQGTTRKSGTTIHFKPDPSIFSVTT-Y 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K + E E F++ G++ +++ E++ Sbjct: 185 NFETLSERLREAAFLLKGLKIELCDMRSDQEN------EIFHYDNGIEAFVEYLNEDKET 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + ++ VE A + + + S+ N + T +GGTHE G + A+TR Sbjct: 239 LHPVVSFSGEHQE----IEVELAFQFNDGYTESVLSFVNNVRTKDGGTHELGAKAAMTRA 294 Query: 342 IKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 + +YA + + ++ D+ I+SV + E +F GQTK+KL + +A+ V+ Sbjct: 295 VNEYARKVKLLKEKEKNLDGSDIREGFTAIVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLA 454 + + ++ +NP +T L++ ++ ++ R RK RE R K + GKL Sbjct: 355 GLVSEKLSYFFEENPDISTMLIKKAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLT 414 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A E I N++I Sbjct: 415 PAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIR 474 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +G + + ED+ Y+K++IMTDAD DGAHI LLLTFFY+ M L+E +++ Sbjct: 475 TIIHTIGAGVGADFDLEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYI 534 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K V YA DE +++ + + R+KGLGEM A+QL E Sbjct: 535 ALPPLYKVSRGTGKKEVIEYAWDERELDTAIKKVGR----GYMLQRYKGLGEMNATQLWE 590 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T MD RTL+RV+I+ + + LMG K + R K+I+ +F Sbjct: 591 TTMDPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIETHVAF 636 >gi|148255370|ref|YP_001239955.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1] gi|146407543|gb|ABQ36049.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1] Length = 687 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 382/651 (58%), Positives = 478/651 (73%), Gaps = 9/651 (1%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +LEGLEPVR RPGMYIGGTDEKALHHLF+EVIDN+MDE +AG+A IEV Sbjct: 40 SEGEYTARDIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIEV 99 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 LD GFLTV DNGRGIPV+ HPKFP KS LEII+ TLHAGGKFD+ YE SGGLHGVGI Sbjct: 100 ELDAQGFLTVTDNGRGIPVDPHPKFPKKSALEIIMCTLHAGGKFDSKVYETSGGLHGVGI 159 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L V VAR ++ F RG P LE+ KV N+RGT++ F+PDP IFG K Sbjct: 160 SVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEIGKVANRRGTKVRFQPDPTIFGAK 219 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE-EFYFPGGLKTYLQTKLE 278 A F RL KM +SKAYL G V+ W CD + + + E F+FPGGLK YL + Sbjct: 220 ATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQPEATFHFPGGLKDYLAAAIH 279 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 +L+ +IF GK+ + G H G EWA+AW + + ++SYCNTI T +GGTHESG+R A Sbjct: 280 ADTLVHPDIFAGKSGRTGGH-GGCEWAVAWTADADGFLSSYCNTIPTPDGGTHESGIRSA 338 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L RG+K +AE KR+ +I S+D+M A +LSVF+REPEF GQTK +L + +AQR V Sbjct: 339 LLRGLKDHAERVGQGKRSANITSEDIMAGAAIMLSVFVREPEFQGQTKDRLATAEAQRIV 398 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 E A++DPFDH+L NP++A +LL++VIER+EER+RRR+++E RKTA +KLRLPGKLADC Sbjct: 399 EQAVKDPFDHWLSGNPVQANRLLDFVIERAEERIRRRQEKETARKTATKKLRLPGKLADC 458 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + G+ELFIVEGDSAGGSAKQAR+R QAVLPLRGKILNVASAG +K+ N Q+ DL Sbjct: 459 TDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKILNVASAGKDKLTANAQLADL 518 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 V A+G T + YREEDLRY+++IIMTDADVDGAHIASLL+TFFY++M LI++ HL+L Sbjct: 519 VMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLYLAV 578 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+R+T +K+ YA DE H+ +IL+ + + K++I RFKGLGEM+ +QLKET MD Sbjct: 579 PPLYRLTHNSKTFYARDEAHRDEILKR-EFNANAKVDIGRFKGLGEMMPAQLKETTMDPA 637 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VG 685 KRTLLRV + D T DS+ +LMGTKA+ RF FI E+A F D + Sbjct: 638 KRTLLRVVLLADDRDG--TADSVERLMGTKAEARFAFISEKAEFASDELLD 686 >gi|327440233|dbj|BAK16598.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046] Length = 657 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 240/649 (36%), Positives = 349/649 (53%), Gaps = 32/649 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY N I V + Sbjct: 9 SYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALAGYGNHIIVKIH 68 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D+GRG+P H K T EII T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 69 EDNSISVRDHGRGMPTGMHKM--GKPTPEIIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L VT+ R N I+ Q+F +G + + GT + F PDP IF + Sbjct: 127 NALSSFLEVTIYRDNQIYRQRFEQGGKPATSLDMIGKTKETGTLVHFLPDPSIFSVI-KY 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K + + E FY+ G++ ++ E + + Sbjct: 186 NYDTLAERLRESAFLLKGLKIELIDARG------EGQHEIFYYENGIEAFVTYLNEEKDV 239 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + T VE+A+ + + I S+ N + T +GGTHE+G + ALTR Sbjct: 240 LHPVKYVEGT----IQEIEVEFALQFNDGYSETILSFVNNVRTRDGGTHETGAKTALTRV 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V+ Sbjct: 296 FNEYARKIGLLKEKDKNLEGTDIREGLTAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 355 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--PGKLAD 455 + + + L +N + L+ I + R RK R+ R RK GKL Sbjct: 356 TVVSEQLMYVLEENAELSASLVRKAIRAQQVREAARKARDDARNGKKRKSSTLLSGKLTP 415 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 A EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N A + I N++I Sbjct: 416 AQSKNASRNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIAT 475 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G + + ED Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +++ Sbjct: 476 IIHTIGAGVGADFSVEDAAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIA 535 Query: 576 SPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL+++++G K YA E+ ++ K I R+KGLGEM A QL +T Sbjct: 536 LPPLYKVSKGSGKKQELMYAWTEQELSAATKKIGK----GYIIQRYKGLGEMNADQLWDT 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL+RV+I + I LMG K + R K+I+ +F Sbjct: 592 TMNPETRTLIRVKIEDG----ARAERRITTLMGDKVEPRRKWIESNVNF 636 >gi|194246593|ref|YP_002004232.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali] gi|193806950|emb|CAP18382.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali] Length = 633 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 270/649 (41%), Positives = 389/649 (59%), Gaps = 21/649 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y+A SI++LEGLE VR+RPGMYIG T+EK L+HL E++DNA+DE + GYAN I Sbjct: 3 KKTKIYNAESIQVLEGLEAVRIRPGMYIGSTNEKGLNHLVWEIVDNAIDESLEGYANEII 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + + + V DNGRGIPV+ HPK NK+ +E ILTTLHAGGKFDNS+Y+ISGGLHGVG Sbjct: 63 LEVLPENIIRVTDNGRGIPVDIHPK-TNKTVVETILTTLHAGGKFDNSSYKISGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS V + Q I+ QK+ +G P++ LE K +GT ITF PD +IF + Sbjct: 122 ASVVNALSSWFLVEIHLQGKIYFQKYEKGKPVTKLEIKGNTNK-KGTVITFLPDNEIFKE 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L Q A+L+ +K ++ E+ FY+ GLK Y++ + Sbjct: 181 TTNYNFEILKIRMQQLAFLNKGIKLIIIDKRKDIEEKFE-----FYYKEGLKEYIKYLNQ 235 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 N++ ++ E + K +K ++ + I S+ N I T +GGTHE G ++AL Sbjct: 236 NKTSLNKEFYQEKFFEKMFFEIVFQYTEVYNNN---IYSFVNNIPTHDGGTHEEGFKMAL 292 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + KY + K+ I+ IS+D + ++S+ P F QTKTK ++ + ++ + Sbjct: 293 NRILNKYVKDKNMLKKNINFISEDTLEGLTVVISLKHPNPSFESQTKTKFLNSEVRQIIS 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + + YL++NP EA K++E + S+ R+ +K RE R+ + + L KLADC Sbjct: 353 KFFGEELEKYLLENPQEAKKIIEKCLLSSKARIDAKKAREATRRKSPLETLGFASKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +EL+IVEGDSAGGSAKQ R+ QA+LPL+GK+LNV A EKI +N++I+ L Sbjct: 413 YNKNPQESELYIVEGDSAGGSAKQGRDSKYQAILPLKGKVLNVEKARLEKILSNKEIISL 472 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +QA+G + + +RY ++IIMTDADVDGAHI +LLLTFF++ + LIE+ +++ Sbjct: 473 IQAVGTGFGKDFNIDKVRYHRIIIMTDADVDGAHIRTLLLTFFFRNLKPLIEKGYIYFAK 532 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL++I G K YA++E+ +KIL GK I R+KGLGEM QL ET M+ Sbjct: 533 SPLYKIQYGKKITYAYEEQELKKILSRIS----GKFYIQRYKGLGEMNPEQLWETTMNPE 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V DL S N LMG + R KFIQ+ A + D + Sbjct: 589 TRTLLQVNSENDLES----DQVFNMLMGEEVSVRKKFIQDNAIYAD-LD 632 >gi|212550383|ref|YP_002308700.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548621|dbj|BAG83289.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 644 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 379/653 (58%), Gaps = 22/653 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A +I++LEG+E VR RP MYIG +K LHHL EV+DN++DE +AGY I+V ++ Sbjct: 3 EYKADNIQVLEGIEAVRKRPAMYIGDIGQKGLHHLVYEVVDNSIDETLAGYCKNIQVFIN 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV D+GRGIPV+ H K +S LE++LT LHAGGKFD ++Y++SGGLHGVG+S V Sbjct: 63 DDNSVTVKDDGRGIPVDFHEK-EKRSALEVVLTVLHAGGKFDKNSYKVSGGLHGVGVSCV 121 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V R I++Q+FS G + L + + RGT ITF+PD IF + Sbjct: 122 NALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGETND-RGTTITFKPDSSIFIVT-EY 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR-S 281 L + ++L+ V+ + + + E FY GL +++ + Sbjct: 180 KYDILASRLRELSFLNAGVRLELTDKRVSFVNG-TFKHEIFYSSEGLSEFVRFIDSAKQP 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 LI ++I TEK+G VE A+ + I+SY N I T E GTH +G R ALTR Sbjct: 239 LIGNDIIHIITEKQGIP---VEIAMTYNTSYNESISSYVNNINTIEHGTHVAGFRRALTR 295 Query: 341 GIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +KKYA ++ K I I DD ++S+ ++EP+F GQTKTKL + +A V+ Sbjct: 296 TLKKYAVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEAIGAVDQ 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 A+ YL ++P EA +++ V+ + R R RE+ ++ + + LPGKLADCS Sbjct: 356 AVGTALSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQRKSPLAGGGLPGKLADCS 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+F+VEGDSAGG+AKQ R R QA+LPLRGKILNV A K+ N +I ++ Sbjct: 416 DRNPEKCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNVEKAMPYKVLENSEIRNIF 475 Query: 518 QALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ALG + + LRY KV+IMTDADVDG+HIA+L+LTFF++ M +IE+ ++ Sbjct: 476 TALGVTIGTTEDSKGLNIDKLRYHKVVIMTDADVDGSHIATLILTFFFRHMRLMIEKGYV 535 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ +PPL+ + +G Y ++ +Q ++++ + + ++ R+KGLGEM A QL +T Sbjct: 536 YIATPPLYLLKKGKVEEYCWTDQQRQAFIDKYARGDEKQVHTQRYKGLGEMNAQQLWDTT 595 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RTL RV I + + LMG R +FI++ A + ++ Sbjct: 596 MNPEVRTLKRVTIE----NAAEADRVFAILMGEDVTPRREFIEDNAIYA-NID 643 >gi|206968830|ref|ZP_03229785.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134] gi|228922304|ref|ZP_04085611.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953865|ref|ZP_04115904.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071096|ref|ZP_04204322.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185] gi|229080802|ref|ZP_04213320.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2] gi|229191682|ref|ZP_04318661.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876] gi|206735871|gb|EDZ53029.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134] gi|228591844|gb|EEK49684.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876] gi|228702536|gb|EEL55004.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2] gi|228712036|gb|EEL63985.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185] gi|228805833|gb|EEM52413.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837359|gb|EEM82693.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 654 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|229151792|ref|ZP_04279991.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550] gi|228631605|gb|EEK88235.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550] Length = 654 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|322388043|ref|ZP_08061649.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis ATCC 700779] gi|321141064|gb|EFX36563.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis ATCC 700779] Length = 649 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYRQRFENGGKPVTTLEKIGTAPKSKTGTKVTFMPDASIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYVNGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA] gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA] Length = 649 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 255/658 (38%), Positives = 381/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + S YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIQVFIEKDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q+++RG ++ L+ ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGDT-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ + + ++ E + +++++ GG+ + Sbjct: 180 DPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGME-----QSKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y+Q EN+ +I E + TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVQYINENKEVIFDNPIYTDGEMEDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + + F +L++NP A K++E I S+ R+ ++ RE +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGADFDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y ++ Q+ L + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEVKEYIQPGADQEIKLQEALARYS-EGRSKPSIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 644 >gi|229179883|ref|ZP_04307229.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W] gi|228603564|gb|EEK61039.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W] Length = 654 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|319653142|ref|ZP_08007244.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] gi|317395063|gb|EFV75799.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] Length = 660 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 247/651 (37%), Positives = 369/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY + I V + Sbjct: 9 DYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNAVDEALAGYGDHIIVKIH 68 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 69 KDNSISVQDKGRGMPTGMH--RMGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFS-RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V + R ++ Q+F G P++ LEK K N+ GT I F+PDP IF Sbjct: 127 NALSEWLVVKIKRDGFVYEQRFELGGKPVTTLEKVGKT-NQSGTTIHFKPDPSIFSTTT- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ + F++ G++ +++ E + Sbjct: 185 YNYETLCERLRESAFLLKGMKIEIIDER-------NDFHDVFHYENGIEAFVEYLNEEKD 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 ++ + + + E G V++A + + E S+ N + T +GGTHE+G + A+TR Sbjct: 238 ILHPVV-SFEGESNGI---EVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTR 293 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ DL I+SV + E +F GQTK KL + +A+ V Sbjct: 294 AFNEYARKVNLLKEKDKNLDGADLREGFTAIVSVRVPEELLQFEGQTKGKLGTSEARSAV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 ++ + + ++L +NP ++ L++ I+ + R RK RE R RK L GKL Sbjct: 354 DSVVSEHLSYFLEENPETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKL 413 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 414 TPAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 473 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G S + ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M L+E +F Sbjct: 474 NTIIHAVGAGVGSDFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVF 533 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K V YA ++ Q +++ K + R+KGLGEM A QL Sbjct: 534 IALPPLYKVSKGSGKKEVIEYAWSDDDLQDTIKKVGK----GYMLQRYKGLGEMNADQLW 589 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL+RV+I+ + + LMG K + R K+I+ +F Sbjct: 590 ETTMDPESRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIESNVAF 636 >gi|306829671|ref|ZP_07462861.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC 6249] gi|304428757|gb|EFM31847.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC 6249] Length = 647 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYRQRFENGGKPVTTLKKIGTAAKSKTGTKVTFMPDASIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDETIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|331266192|ref|YP_004325822.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5] gi|326682864|emb|CBZ00481.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5] Length = 647 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLQKVGTAAKSKTGTKVTFMPDASIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TEEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LASAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|229031253|ref|ZP_04187259.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271] gi|228730011|gb|EEL80985.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271] Length = 654 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|149915418|ref|ZP_01903945.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b] gi|149810707|gb|EDM70548.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b] Length = 652 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 347/652 (53%), Positives = 452/652 (69%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + S +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +E++DN+MDE +AG+AN Sbjct: 7 SATDSSDYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEILDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + LTV DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHEDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFGGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR ++ Q+FSRG+PL P++K + N+RGT ITF D +IF Sbjct: 127 VGASVVNALSDSMVVQVARNKELYEQRFSRGVPLGPIQKIGQAPNRRGTTITFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G F ARL +SKAYL V+ W K P + F+FPGGL YL+ Sbjct: 187 GS-HRFKPARLFNSIRSKAYLFSGVEIRW---KSAITDGDTPTEATFHFPGGLSDYLRET 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + S + + F G +++ G VEWAI W + + SYCNT+ T EGGTH +G Sbjct: 243 MNGASTYADQPFAGTVDFQERFGMPGKVEWAINWTPSRDGSLQSYCNTVPTPEGGTHVAG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y EL N++A +I +DLM ++S FIREPEF GQTK +L + +AQ Sbjct: 303 FWAAILKGIKGYGELVNNRKATNITREDLMAGGCALVSCFIREPEFVGQTKDRLATTEAQ 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R VENA+RD FD++L + A +L++++ R+EERLRRR+++E RKTA +KLRLPGKL Sbjct: 363 RLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETQRKTATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS N+ GTELFIVEGDSAGGSAK R+R QA+LPLRGKILNV A S K+ +NQ+I Sbjct: 423 VDCSSNVRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKLGSNQEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG S++ +DLRY+K+IIMTDADVDGAHIASLL+TFF+ +M +I+ HL+ Sbjct: 483 ADLTQALGVGLGSKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K VY D+ + ++ GKGKI++SRFKGLGEM A LKET M Sbjct: 543 LACPPLYRLTQGAKRVYCLDQAERDAWMK-KGLGGKGKIDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L+RV I++D +T D + +LMG K + RF++I E A F++++ Sbjct: 602 DPKTRKLIRVTIDEDE--PGETGDLVERLMGKKPELRFQYISENARFVEELD 651 >gi|254460660|ref|ZP_05074076.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium HTCC2083] gi|206677249|gb|EDZ41736.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium HTCC2083] Length = 651 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 348/646 (53%), Positives = 451/646 (69%), Gaps = 10/646 (1%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+A+ IEV L Sbjct: 12 DYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHASRIEVELL 71 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIP++ HPKFP+KS LE+IL TLHAGGKF YE SGGLHGVG SVV Sbjct: 72 SDYSMVIKDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGDAYETSGGLHGVGASVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD + V VAR ++ Q+FSRGIPL P+EK N+RGT +TF D +IFG F Sbjct: 132 NALSDSMVVQVARNKELYEQRFSRGIPLGPVEKVGAAPNRRGTTVTFHADEQIFGS-HRF 190 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ARL K +SKAYL V+ W + + E P F+FPGGL YL L + S Sbjct: 191 KPARLFKSIRSKAYLFSGVEIRWKSEIDDGE---TPTTATFHFPGGLADYLTESLGSAST 247 Query: 283 ISSEI--FTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + + ++K G VEWAI W + I SYCNT+ T EGGTHE+G A+ Sbjct: 248 YADKPFAWVVDFKEKFNAPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHEAGFWAAIL 307 Query: 340 RGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +GI+ Y EL+ NK+A SI DDL+ ++S FIREPEF GQTK +L +++AQ+ VE A Sbjct: 308 KGIRAYGELSNNKKAASITRDDLVTGGCALVSCFIREPEFVGQTKDRLATVEAQKFVEGA 367 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RD FD++L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL DCS + Sbjct: 368 VRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKLVDCSNS 427 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 GTELFIVEGDSAGGSAK RNR QA+LPL+GKILNV A S KI NQ+I DL QA Sbjct: 428 NREGTELFIVEGDSAGGSAKMGRNRKTQALLPLKGKILNVLGAASGKIGTNQEINDLTQA 487 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG +++ +DLRYEKVIIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+L PPL Sbjct: 488 LGVGLGTKFNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMIDAGHLYLACPPL 547 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FR+TQG VY DE K+ LE+ G+GKI++SRFKGLGEM A LK+T M+ R Sbjct: 548 FRLTQGANRVYCLDEAEKKYHLEK-GLGGRGKIDVSRFKGLGEMDAKDLKDTTMNPETRK 606 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV I++D +T D + +LMG K ++RF++IQE A F++++ Sbjct: 607 LIRVTIDEDE--PGETGDLVERLMGKKPEKRFEYIQENAQFVEELD 650 >gi|254441649|ref|ZP_05055142.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307] gi|198251727|gb|EDY76042.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307] Length = 652 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 342/652 (52%), Positives = 436/652 (66%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + NYDASSI +LE +E VR+RPGMYIGG D++ALHH+ +E++DN+MDE +AG+A Sbjct: 7 SGQTPSNYDASSIEVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIVDNSMDEAVAGHATW 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L NG TV DNGRGIPV HPK PNKS LE+I TL+AGGKF +Y+ SGGLHG Sbjct: 67 IEVELHANGHATVRDNGRGIPVGMHPKLPNKSALEVIFCTLNAGGKFSGDSYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD L V VA +F +FSRG+P +PL K N+RGT +TF PDP+IF Sbjct: 127 VGSSVVNALSDHLRVEVAINKELFMMEFSRGVPQAPLAKIGAAPNRRGTAVTFHPDPEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G ARL KM +SKAYL V+ W D E P++ F FPGGL YL Sbjct: 187 GS-LDLKPARLFKMARSKAYLFSGVEIRWKTDINDGE---TPQEATFKFPGGLADYLNET 242 Query: 277 LENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 L + S + F G + K G VEWAI W + I SYCNT+ T EGGTHE G Sbjct: 243 LAGATTYSEKPFAGTVDFTDKFNVPGKVEWAINWTPTRDGFIQSYCNTVPTPEGGTHEQG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GIK Y E NK+A +I +DL A ++S FIR+PEF GQTK +L + DA Sbjct: 303 FWAAVLKGIKSYGERVNNKKATNITREDLTTGAGALVSCFIRDPEFVGQTKDRLATTDAL 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R V+ A+ D FD++L + A +L++++ R+EERLRR++++E +RKTA KLRLPGKL Sbjct: 363 RMVQLAVADHFDNWLAADTKSAGAILDFLVLRAEERLRRKQEKETSRKTATAKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS GTELFIVEGDSAGGSAK ARNR QA+LPL+GKILNV A S K+ N +I Sbjct: 423 TDCSNKSRDGTELFIVEGDSAGGSAKMARNRKTQALLPLKGKILNVLGAASNKLGTNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG + +++ +DLRYEKVIIMTDADVDGAHIA+LL+TFF+ +M +I+ HL+ Sbjct: 483 SDLTQALGVQLGAKFNVDDLRYEKVIIMTDADVDGAHIAALLMTFFFSQMRPMIDAGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPLFR+TQG + Y DE K IL G GK+++SRFKGLGEM A LKET M Sbjct: 543 LACPPLFRVTQGARREYCLDEVEKNAILAR-GLGGSGKMDVSRFKGLGEMDAKDLKETTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L++V I++D +T D + +LMG K + RF++IQE A F++++ Sbjct: 602 DPKSRKLIKVSIDEDE--AGETADLVERLMGKKPEMRFQYIQENARFVEELD 651 >gi|323357952|ref|YP_004224348.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] gi|323274323|dbj|BAJ74468.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] Length = 677 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 248/680 (36%), Positives = 364/680 (53%), Gaps = 23/680 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + P + + Y A +I++LEGLE VR RPGMYIG T E+ LHHL E++ Sbjct: 3 SENPDSVSEEPEAPSTKVPNEYGADAIQVLEGLEAVRKRPGMYIGSTGERGLHHLVQEIV 62 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AGY + I+V++ +G + VVDNGRGIPV+ H + KST+E++LT LHAGGK Sbjct: 63 DNSVDEALAGYCDTIDVTILSDGAVRVVDNGRGIPVDMH-RTEGKSTVEVVLTVLHAGGK 121 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y +SGGLHGVG SVVNALS L V V RQ ++ Q F G +K + ++ Sbjct: 122 FGGGGYAVSGGLHGVGSSVVNALSTRLEVEVKRQGHVWRQSFRDGGQPLAPLEKGEESDQ 181 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEK 254 GT ITF PD IF FD L Q A+L+ ++ ++ E E+ Sbjct: 182 TGTTITFWPDATIFDT-IDFDYDTLRTRFQQMAFLNKGLRISLRDERPQSVVVEGEPGEE 240 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN- 312 + F + GL Y++ R + E + T R +E A+ W Sbjct: 241 VTEARNDSFLYERGLVDYVEHLNRVRKADVVNDEIIEVESEDTDRHIALELAMQWTTAYT 300 Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGIL 370 + +Y NTI T EGGTHE G R ALT + +YA ++ ++ DD+ ++ Sbjct: 301 ENVFTYANTINTHEGGTHEEGFRAALTTLVNRYARANNLLKEKDDNLTGDDIREGLTAVI 360 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV + EP+F GQTKTKL + +A+ V+ + D + +NP +A ++ I+ + RL Sbjct: 361 SVKLSEPQFEGQTKTKLGNTEARAFVQKVVGDKLGDWFDRNPGQAKNIIRKAIDAATARL 420 Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK RE R+ + +P KL DC+ +E+F+VEGDSAGGSA Q R+ QA+ Sbjct: 421 AARKARETARRKSVFESAAMPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAI 480 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 L LRGKILNV A ++ N+++ ++QA G + RY K+++M DADVDG Sbjct: 481 LALRGKILNVERARLDRALGNKEVQAMIQAFGTGIGEDFDMAKARYHKIVLMADADVDGQ 540 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHG 608 HI +LLLT ++ M LIE ++L PPL+R+ YA+ + + +L + + G Sbjct: 541 HITTLLLTLLFRYMRGLIEAGFVYLAQPPLYRLKWSNHPHEYAYSDRERDAMLVDGQAAG 600 Query: 609 KGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 + + I R+KGLGEM +L ET MD RTL +V I+ + + LMG Sbjct: 601 RRIPKDNGIQRYKGLGEMNDHELWETTMDPETRTLKQVTIDD----AAAADEIFSVLMGE 656 Query: 666 KADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 657 DVESRRSFIQRNAKDVRFLD 676 >gi|183219432|ref|YP_001837428.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909578|ref|YP_001961133.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774254|gb|ABZ92555.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777854|gb|ABZ96152.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 639 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 251/657 (38%), Positives = 376/657 (57%), Gaps = 25/657 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +NQ+ + Y AS I+ILEGLE VR RPGMYIG DE LH + EV+DN++DE +AG+ Sbjct: 1 MSNQTDQNAYSASKIKILEGLEAVRKRPGMYIGTQDESGLHKMVYEVVDNSVDEAMAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V + + V DNGRGIP HP KST+E++LT LHAGGKF+N Y++SGGL Sbjct: 61 TEIDVRILPENIIEVRDNGRGIPTGIHP-DKGKSTIEVVLTILHAGGKFENDAYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L V V ++ + QK+ G+P+ ++ + RGT + FRPD Sbjct: 120 HGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETT-HRGTVVRFRPDHT 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + A+L+ + ++ F F GG+ ++++ Sbjct: 179 IFTT-VDFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHE-----FKFDGGIVSFVE 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E++ + + EK+ E A+ +C+ I + N I + GGTH G Sbjct: 233 YITESKHPLHKVLHFV-GEKENVW---AEIALQYCDTYSENIFCFTNAINNNLGGTHLEG 288 Query: 334 LRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 R ALTR + + + Q K+ + DD+ ++S+ I +P+F QTK KLV+ Sbjct: 289 FRTALTRTLNDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNA 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + ++ + + Y +NP K+LE I S+ R R+ R+ RKT + L Sbjct: 349 EVKGLMQTITGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKTVLEGGGL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS+ ELF+VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV A +KI + Sbjct: 409 PGKLADCSEKDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILS 468 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L+ +G ++ E LRY K+IIMTDADVDG+HI +LLLTFF++ M +IE Sbjct: 469 NEEIRTLITVMGTGIGDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIE 528 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + L++ PPL+ + G ++VY + + K +IL+ K+ I R+KGLGEM QL Sbjct: 529 RGSLYVAQPPLYLLKFGKEAVYVYSDREKDEILKARPND---KVVIQRYKGLGEMNPEQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD +R +L+V++ + + +D+ N LMG + R +FI+ + + ++ Sbjct: 586 WDTTMDPKERVMLQVKLQDFV----EAEDTFNILMGDEVSPRRRFIEANSYKVANLD 638 >gi|30021698|ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579] gi|228959781|ref|ZP_04121456.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047280|ref|ZP_04192879.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676] gi|229128869|ref|ZP_04257845.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4] gi|29897253|gb|AAP10530.1| Topoisomerase IV subunit B [Bacillus cereus ATCC 14579] gi|228654574|gb|EEL10436.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4] gi|228724022|gb|EEL75368.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676] gi|228799911|gb|EEM46853.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 654 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G IP++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|238810228|dbj|BAH70018.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 644 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 257/655 (39%), Positives = 374/655 (57%), Gaps = 23/655 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S YDAS+I++LEGLE VR+RPGMYIG T + LHHL E++DN++DE +AG+AN +E Sbjct: 4 NMSKEYDASNIKVLEGLEAVRVRPGMYIGTTGIRGLHHLIWEIVDNSVDEAMAGFANKVE 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G++ V+DNGRGIP HPK ST+E +LT LHAGGKFD+ +Y++SGGLHGVG Sbjct: 64 ITITKDGYIDVIDNGRGIPTAVHPK-TGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216 SVVN LSD+ V V R + F+ G + E GTRI F PD I Sbjct: 123 ASVVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIM 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 +D ++ + AYL+ ++ + +++ +EE++F GG+ Y++ Sbjct: 183 DKN-EWDKGVIVDHAKQIAYLNKGLRIIVNDERD-------KSREEYHFEGGIVDYVKEL 234 Query: 277 LENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESG 333 + LI ++ + E + + VE A+ + E + SY N I+T EGGTHESG Sbjct: 235 NTGQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESG 294 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 AL R + Y + + +D+ V I+SV P F GQTK KL + D Sbjct: 295 FYDALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKD 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 A+ V D F+ +L +NP EA +++ I + RL R+ RKT LP Sbjct: 355 ARMAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A +EL+IVEG+SAGGSAK RNR QA+LPLRGK++N +K+ N Sbjct: 415 GKLADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFAN 474 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I+ L+ ALG ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ LIE Sbjct: 475 AEILSLITALGTGVGEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL++I Q YA+++ K++I++ + K+ + R+KGLGEM QL E Sbjct: 535 FIYIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGL--NQNQKVTVQRYKGLGEMDPEQLWE 592 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD R +L+V+I + LMG + R +FI++ A ++ ++ Sbjct: 593 TTMDPVNRKMLQVQIED----AARADWAFTTLMGDEVLPRREFIEQNAKYVKNID 643 >gi|7437446|pir||S70991 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Mycobacterium smegmatis gi|1321898|emb|CAA63253.1| gyrB [Mycobacterium smegmatis] Length = 706 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 255/717 (35%), Positives = 372/717 (51%), Gaps = 56/717 (7%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62 DD S PP A +A Y A SI ILEGLE VR RP Sbjct: 11 DDGSQAVSAPPPSEPQGDASDV---------AAQKNNAPKEYGADSITILEGLEAVRKRP 61 Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 GMYIG T E+ LHHL EV+DNA+DE +AG+A ++V + +G + V D+GRGIPVE H Sbjct: 62 GMYIGSTGERGLHHLIWEVVDNAVDEAMAGFATRVDVKIHADGSVEVRDDGRGIPVEMH- 120 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 T+++++T LHAGGKFD TY +SGGLHGVG+SVVNALS L TV R + Q Sbjct: 121 -ATGMPTIDVVMTQLHAGGKFDGETYAVSGGLHGVGVSVVNALSTRLEATVLRDGYEWFQ 179 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + R +P K+ + GT I F DP+IF ++ + + Q A+L+ + Sbjct: 180 YYDRSVPGKL--KQGGETKETGTTIRFWADPEIFET-TDYNFETVARRLQEMAFLNKGLT 236 Query: 243 TCWSCDKEIAEKYGIP-------------------------EKEEFYFPGGLKTYLQTKL 277 + ++ AE+ + F++PGGL Y++ Sbjct: 237 IELTDERVTAEEVVDDVVKDTAEAPKTADEKAAEATGPSKVKHRVFHYPGGLVDYVKHIN 296 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I I + G VE A+ W + ++ NTI T EGGTHE G R Sbjct: 297 RTKTPIQQSIIDFDGKGPGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRA 353 Query: 337 ALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALT + +Y + + ++ DD+ ++SV + EP+F GQTKTKL + + + Sbjct: 354 ALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKS 413 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V+ + H+ NP EA ++ + ++ R+ RK RE V RK+A LPGKL Sbjct: 414 FVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKL 473 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC +EL++VEGDSAGGSAK R+ QA+LPLRGKI+NV A +++ N ++ Sbjct: 474 ADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEV 533 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG ++ LRY K+++M DADVDG HI++LLLT ++ M L+E H+F Sbjct: 534 QSIITALGTGIHDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIF 593 Query: 574 LISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQL 628 L PPL+++ + +A+ + + +LE + GK KI I R+KGLGEM A +L Sbjct: 594 LAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK-KINVDDGIQRYKGLGEMDAKEL 652 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD + R L +V ++ + + LMG + R FI A + + Sbjct: 653 WETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEARRSFITRNAKDVRFLD 705 >gi|307331912|ref|ZP_07611008.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306882430|gb|EFN13520.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 676 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 259/676 (38%), Positives = 375/676 (55%), Gaps = 19/676 (2%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 S ++ DS A A S YDAS+I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 11 DSGNPIENIPSTSDSEALAPPS----YDASAITVLEGLEAVRKRPGMYIGSTGERGLHHL 66 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 EV+DN++DE +AG+A+ IEV++ +G + VVDNGRGIPV P K +E++LT L Sbjct: 67 VQEVVDNSVDEAMAGHADSIEVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVL 125 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE 197 HAGGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G P +PL + E Sbjct: 126 HAGGKFGGGGYAVSGGLHGVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGAPTAPLARNE 185 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE-IAEKYG 256 GT +TF DP +F + L + Q A+L+ + ++E ++ G Sbjct: 186 ATEE-TGTTVTFWADPDVFET-TEYSFETLARRFQEMAFLNKGLSISLKDEREAHVDEEG 243 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315 P ++Y+ GG+ ++ + + G + ++E A+ W + + Sbjct: 244 KPLSVKYYYEGGIVDFVTYLNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYTEGV 303 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373 S+ NTI T EGGTHE G R ALT I KYA + +R ++ +D+ I+SV Sbjct: 304 YSFANTIHTHEGGTHEEGFRAALTYLINKYARDKKLLRERDDNLTGEDIREGLTAIISVK 363 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F GQTKTKL + +A+ V+ + + +L + P EA ++ I+ + R+ R Sbjct: 364 LGEPQFEGQTKTKLGNTEAKTFVQKVVNEHLADWLDRYPNEAADIVRKGIQAATARVAAR 423 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN QA+LP+ Sbjct: 424 KARDLTRRKGLLETASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPI 483 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552 RGKILNV A +KI N ++ L+ A G + + LRY K+I+M DADVDG HI Sbjct: 484 RGKILNVEKARVDKILQNNEVQALISAFGTGVHEDFDIDKLRYHKIILMADADVDGQHIN 543 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK-- 609 +LLLTF ++ M L+E H+FL PPL++I G YA+ + + +++ + GK Sbjct: 544 TLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGRAQGKRI 603 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 + RFKGLGEM A +L+ T MD + R L +V ++ D + LMG + Sbjct: 604 RDDSVQRFKGLGEMNAEELRITTMDPDHRVLGQVTLDD----AAQADDLFSVLMGEDVEA 659 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 660 RRSFIQRNAKDVRFLD 675 >gi|293363557|ref|ZP_06610313.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] gi|292552906|gb|EFF41660.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] Length = 646 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 254/659 (38%), Positives = 369/659 (55%), Gaps = 27/659 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDAS+I+ LEGLE VR RPGMYIG T + LHH+ E++DN++DE +AG+A+ I Sbjct: 2 EKAHNYDASNIKFLEGLEHVRKRPGMYIGTTSKDGLHHMIWEIVDNSVDECMAGFASKIF 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ + + V DNGRGIPV H +F S LE++LT L+AGGKF+++ Y++SGGLHGVG Sbjct: 62 ITITNDNRIIVEDNGRGIPVGTHERF-GISALEVVLTKLNAGGKFESNAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 SVVNALSD + V R I+ +F+ G + + N+ GT+I F PD I Sbjct: 121 ASVVNALSDSMKAWVKRDGKIYHAEFANGGHTVQATHVIGEYEGNETGTKIEFHPDFSIM 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD ++ + A+L+ + ++ + EEF + G+ Y++ Sbjct: 181 ENVP-FDKELIIDHAKQIAHLNKSLFVSVKDLRDDS-------YEEFKYDNGIIDYVREL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGT-----VEWAIAWCEENPEITSYCNTIL--TDEGGT 329 E S I+ EI + E H G VE A + + P T EGGT Sbjct: 233 NEGYSPINPEIIFAEGEFLSVHNGQERQIGVEVAAQYLSDFPRSNIISYANNISTHEGGT 292 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H SG ++ R + YA + +DL I+SV +P+F GQTK KL Sbjct: 293 HVSGFYDSVMRIVNNYAIENGIIKTDAEKFSREDLTEGLTTIISVKHPDPQFEGQTKGKL 352 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 S DA+ V + ++ L +NP+ A K++E I + RL R+ RK+A Sbjct: 353 GSKDARMAVNKVFSEVYERMLNENPLIAKKIIENAIYARKGRLAANAARDNAKRKSAFDN 412 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC+ A +EL++VEG+SAGGSAK R+R+ QA+LPLRGK+LNV A +K Sbjct: 413 GGLPGKLADCATKNAELSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDK 472 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + NN++IM LV ALG + LRY K++IMTDADVDGAHI +LLLTFFY+ L Sbjct: 473 VVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPL 532 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE +++ PPL++I Q YA+++ K++I + + KI I R+KGLGEM Sbjct: 533 IEYGFVYIAQPPLYKIQQNKTVEYAYNDAQKEEITSKL--NPNQKINIQRYKGLGEMDPD 590 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD R +L+V+I + + LMG + R +FI++ A ++ ++ Sbjct: 591 QLWETTMDPKNRKMLQVQIEDAYK----ADWAFSTLMGENVEPRREFIEKNAKYVKNID 645 >gi|73916368|gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQHNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|270292568|ref|ZP_06198779.1| topoisomerase IV, subunit B [Streptococcus sp. M143] gi|270278547|gb|EFA24393.1| topoisomerase IV, subunit B [Streptococcus sp. M143] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|37522075|ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421] gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421] Length = 644 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 253/655 (38%), Positives = 369/655 (56%), Gaps = 23/655 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y A I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+ I +S Sbjct: 2 TETYGAEQIQVLEGLEHVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGHCKHIAIS 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G T+ D+GRGIP + HP+ KST+E +LT L AGGKF Y++SGGLHGVG + Sbjct: 62 LGADGSATITDDGRGIPTDTHPR-TGKSTIETVLTVLGAGGKFGGGGYKVSGGLHGVGAA 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L T+ R+ + Q+F RGIP L + +RGT I+F PDP+IF Sbjct: 121 VVNALSTILTATIWREGKQYIQRFHRGIPEGGLAVSSDSQKRRGTMISFLPDPEIFTTGV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD LL + A+L+ V+ +S + E+ E + + GG++ Y++ + Sbjct: 181 DFDFDTLLSRFRELAFLNAGVEFRFSDLRGETERT-----ESYIYEGGIREYVKYMTREK 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + + +I E+ G + N + + N I T +GGTH GL+ LTR Sbjct: 236 AALHPDIIFINQERDGV-SVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTR 294 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +A + ++ + + +LSV + PEF GQTKTKL + + + V+ Sbjct: 295 TFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDG 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + YL +P +LE ++ + RK R+ V RK+A+ LPGKLADC Sbjct: 355 VISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQ 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILN+ A KI N +I ++ Sbjct: 415 SRDPAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMI 474 Query: 518 QALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 LG +++ + LRY ++IIMTDADVDGAHI +LLLTFFY+ DL+EQ ++++ Sbjct: 475 TGLGLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQ 534 Query: 577 PPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL++I+ G Y + E+ K+ IL +++ K E+ RFKGLGEM A QL ET Sbjct: 535 PPLYKISIGGGRNIDVRYCYSEQEKEAILRGLREN--QKYELQRFKGLGEMQADQLWETT 592 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 M+ RTL +V I + N LMG + + R +FI+ + D+ Sbjct: 593 MNPETRTLRQVTIED----AAEADRVFNILMGDRVEPRREFIETYGPRLQMADLD 643 >gi|28378501|ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum WCFS1] gi|254556715|ref|YP_003063132.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1] gi|300767447|ref|ZP_07077359.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180658|ref|YP_003924786.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271337|emb|CAD64242.1| topoisomerase IV, subunit B [Lactobacillus plantarum WCFS1] gi|254045642|gb|ACT62435.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1] gi|300495266|gb|EFK30422.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046149|gb|ADN98692.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 668 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 358/660 (54%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY I Sbjct: 3 KKSPKYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TVVD+GRG+PV H T E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 63 VIIHADNSITVVDHGRGMPVGMH--ASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS EL VT+ R + + F G P+ LEKK K GT +TF+PD IF Sbjct: 121 ASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPTGTTMTFKPDASIFT 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ L + + A+L VK + ++E ++ + F++ G+K ++ Sbjct: 181 TTV-YNFQTLAERLRESAFLLKGVKITLTDERENQQQELV-----FHYEDGIKAFVSYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E++ + +I K+G VE A + + E S+ N + T +GGTHE G R Sbjct: 235 EDKDTLG-DIMFFDGTKEGV---EVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEVGFRS 290 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 A T+ +YA + ++ D+ ++S+ + E +F GQTK KL + +A Sbjct: 291 AWTKAFNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKLGTPEA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449 + V+N + + +L++N A L+ + + R RK R+ +R R + L Sbjct: 351 RTIVDNIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHKQERLL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I Sbjct: 411 SGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVK 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G ++ + Y+K+IIMTDAD DGAHI LLLTFFY+ M +I+ Sbjct: 471 NEEINTMIYTIGAGVGPEFDIKASNYDKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDA 530 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ + ++ YA +E + F K + R+KGLGEM A Sbjct: 531 GKIYIALPPLYRLQKKQNKQLRTEYAWTDEELTLKTKSFGK----GYALQRYKGLGEMNA 586 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KRTL+RV I+ + + LMG K + R K+I+ F ++ Sbjct: 587 EQLWETTMDPEKRTLVRVRIDD----AALAEKRVTTLMGDKVEPRRKWIESNVHF--NLD 640 >gi|73916364|gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916380|gb|AAZ93058.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|148557472|ref|YP_001265054.1| DNA topoisomerase IV subunit B [Sphingomonas wittichii RW1] gi|148502662|gb|ABQ70916.1| DNA topoisomerase IV, B subunit [Sphingomonas wittichii RW1] Length = 660 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 357/653 (54%), Positives = 467/653 (71%), Gaps = 7/653 (1%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A A ++S NYDAS+I +LEGLEPVR RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+ Sbjct: 7 ASAPSTSSGNYDASAIEVLEGLEPVRRRPGMYIGGTDERAYHHLAAEVLDNAMDEAVAGH 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 AN IEVSL LTV+DNGRGIPV+ HPKFP KS LE+IL+TLH+GGKF + Y SGG Sbjct: 67 ANRIEVSLQVGNRLTVIDNGRGIPVDPHPKFPGKSALEVILSTLHSGGKFSDKAYATSGG 126 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS E + VAR +F Q+FSRG L P+EK N+RGT ++F PDP Sbjct: 127 LHGVGVSVVNALSTETVIEVARNKELFRQRFSRGTTLGPIEKLGAAPNRRGTSVSFTPDP 186 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFG A F RL+++ +SKAYL V+ W CD + P F FPGGL +L Sbjct: 187 EIFGPSAHFRPGRLMRLARSKAYLFAGVEIRWKCDPSLIGDD-TPSDAVFQFPGGLSDHL 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + ++ +R +S+ F+GK + +G+VEWA+AW + YCNTI T +GGTHE+ Sbjct: 246 REQIGDRECATSQFFSGK-QDFADGQGSVEWAVAWPLWSEGSYSYYCNTIPTPDGGTHET 304 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 GLR AL +GI+ +AEL NKRA + +DD++ + +LSVFIR+P+F QTK +L S DA Sbjct: 305 GLRAALVKGIRGFAELVGNKRAKDVTADDVVTGSEQMLSVFIRDPQFQSQTKDRLTSPDA 364 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 R VENA+RD FDH+L N LL +V++R ++RLRR+ +R++ RKTA RKLRLP Sbjct: 365 ARLVENAVRDHFDHFLADNMERGKALLAFVLDRMDDRLRRKAERDIKRKTATSSRKLRLP 424 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DC+ + GTE+FIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA S KI N Sbjct: 425 GKLTDCANDSPEGTEMFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASANSAKIGAN 484 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q+I D++QALGC +R + + LRYE+++IMTDADVDGAHIA+LL+TFF+QEM DL+ + Sbjct: 485 QEIADIIQALGCGSRDKCNVDLLRYERIVIMTDADVDGAHIATLLMTFFFQEMPDLVREG 544 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+T GTKS+YA D+EH+ +I E + K+E++RFKGLGEM QL+E Sbjct: 545 HLYLAQPPLYRLTAGTKSLYARDDEHRAEI--EANEFKGKKVEVARFKGLGEMNPQQLRE 602 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 T MD RTLLRV + ++ +D +++LMG + RF FIQ A+ +DD Sbjct: 603 TTMDPATRTLLRVTLPQEYEERASVRDLVDRLMGKNPEHRFAFIQANAASVDD 655 >gi|237650389|ref|ZP_04524641.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974] gi|237822238|ref|ZP_04598083.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974M2] gi|73916450|gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916466|gb|AAZ93101.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|73916358|gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D V +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLVAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|225854359|ref|YP_002735871.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae JJA] gi|225723890|gb|ACO19743.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae JJA] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|148984582|ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71] gi|148993664|ref|ZP_01823111.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68] gi|148997072|ref|ZP_01824726.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70] gi|149007204|ref|ZP_01830868.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74] gi|149021718|ref|ZP_01835749.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72] gi|168490285|ref|ZP_02714484.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195] gi|168493006|ref|ZP_02717149.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC3059-06] gi|168575508|ref|ZP_02721444.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016] gi|225858652|ref|YP_002740162.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 70585] gi|225861253|ref|YP_002742762.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298229147|ref|ZP_06962828.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255376|ref|ZP_06978962.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503141|ref|YP_003725081.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|307067449|ref|YP_003876415.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200] gi|73916362|gb|AAZ93049.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916370|gb|AAZ93053.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916384|gb|AAZ93060.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916390|gb|AAZ93063.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916394|gb|AAZ93065.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916396|gb|AAZ93066.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916398|gb|AAZ93067.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916400|gb|AAZ93068.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916402|gb|AAZ93069.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916406|gb|AAZ93071.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916408|gb|AAZ93072.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916410|gb|AAZ93073.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916434|gb|AAZ93085.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916438|gb|AAZ93087.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916440|gb|AAZ93088.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916460|gb|AAZ93098.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|147756772|gb|EDK63812.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70] gi|147761242|gb|EDK68209.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74] gi|147922973|gb|EDK74088.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71] gi|147927744|gb|EDK78767.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68] gi|147930179|gb|EDK81165.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72] gi|183571345|gb|EDT91873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195] gi|183576946|gb|EDT97474.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC3059-06] gi|183578568|gb|EDT99096.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016] gi|225720805|gb|ACO16659.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 70585] gi|225728117|gb|ACO23968.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238736|gb|ADI69867.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] gi|301799848|emb|CBW32422.1| topoisomerase IV subunit B [Streptococcus pneumoniae OXC141] gi|306408986|gb|ADM84413.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Streptococcus pneumoniae AP200] gi|327390204|gb|EGE88547.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA04375] gi|332073182|gb|EGI83661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17570] Length = 647 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|15902800|ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae R6] gi|116516535|ref|YP_816236.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae D39] gi|15458350|gb|AAK99560.1| Topoisomerase IV subunit B [Streptococcus pneumoniae R6] gi|116077111|gb|ABJ54831.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae D39] Length = 647 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|149184516|ref|ZP_01862834.1| topoisomeraseB subunit [Erythrobacter sp. SD-21] gi|148831836|gb|EDL50269.1| topoisomeraseB subunit [Erythrobacter sp. SD-21] Length = 662 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 345/653 (52%), Positives = 457/653 (69%), Gaps = 10/653 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 ++S +YDASSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+ Sbjct: 8 NTPTSSGDYDASSIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHAS 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV LD N +T+ DNGRG+PV HPK+P KSTLE+ILTTLH+GGKF Y SGGLH Sbjct: 68 RIEVRLDENNRVTITDNGRGMPVAEHPKYPGKSTLEVILTTLHSGGKFSGKAYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD V VAR T+++Q+FS+G P +E+ N+RGT +TF PD +I Sbjct: 128 GVGVSVVNALSDYTRVEVARDKTLYAQEFSKGAPKGGIEELGPTPNRRGTTVTFIPDTEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FGD F A RL K+ +SKAYL V+ W C + + +P + F FPGGL +L Sbjct: 188 FGD-RKFSAKRLFKLARSKAYLFAGVEIRWKCAESLTSDD-VPAEAVFKFPGGLADHLAE 245 Query: 276 KLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331 ++ R ++++ F G E G +G VEWAIAW + + YCNT+ T +GGTHE Sbjct: 246 QIGGRECVTAQPFAGSQEFPETDGMEQGRVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHE 305 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 GLR ALT+G++ + ELT K+A + +DD+M+ A +LSVFIR+P+F QTK +L S + Sbjct: 306 QGLRAALTKGLRAFGELTGTKKAKDLTADDIMVGAEVMLSVFIRDPQFQSQTKDRLTSPE 365 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449 A R VENA+RD FDH+L + LL V+ER +ERLRR+++RE+ RKTA +KLRL Sbjct: 366 AARLVENAVRDHFDHFLADSMDRGKALLGQVMERMDERLRRKQEREIKRKTATNAKKLRL 425 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS TELFIVEGDSAGGSAKQARNR QA+LP+RGKILNVASA ++KIR Sbjct: 426 PGKLTDCSGEGDGETELFIVEGDSAGGSAKQARNRKTQAILPIRGKILNVASATADKIRA 485 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I DL A+GC TR E+LRY+++IIMTDADVDGAHIA+LL+TFF+QEM D++ Sbjct: 486 NSEIADLSLAMGCGTRKDCDAENLRYDRIIIMTDADVDGAHIATLLMTFFFQEMPDIVRN 545 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+T G +S YA D+EH++++ E K K+E+ RFKGLGEM +QL+ Sbjct: 546 GHLYLAQPPLYRLTAGKESRYARDDEHRKELEETVFK--GKKVEVGRFKGLGEMNPAQLR 603 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD + R+L+R+ + + ++ +++LMG + RF FIQ A D Sbjct: 604 ETTMDPDTRSLIRITLPAEFEQRAVVKELVDQLMGRNPEHRFNFIQNNAGEFD 656 >gi|313890482|ref|ZP_07824110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120999|gb|EFR44110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 650 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 375/648 (57%), Gaps = 24/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YDAS I++LEGLE VRMRPGMYIG T + LHHL E++DN++DE +AG+A+ IEV + Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTSSEGLHHLVWEIVDNSIDEALAGFASHIEVII 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG SV Sbjct: 73 EEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L V V + I Q+F RG+ + L + GT + F PDP+IF + Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGVVVDDLTIIGET-ELTGTTVHFTPDPEIFTETVI 190 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ +L K Q A+L+ ++ S ++ G+ ++++F++ GG+ +Y++ E + Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRK-----GMQQEKDFHYEGGIGSYVEYLNEKKD 245 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +I E G VE A+ + + S+ N I T EGGTHE G R ALTR Sbjct: 246 VIIETPIYTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTR 302 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 303 VINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNR 362 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADCS Sbjct: 363 LFSEAFHRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCS 422 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 423 SNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLF 482 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ P Sbjct: 483 TAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542 Query: 578 PLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 P++ + G + Y E Q LE++ G+ K + R+KGLGEM QL ET Sbjct: 543 PIYGVKVGNEIKEYIQPGVNQEIQLQDALEKYS-SGRSKPSVQRYKGLGEMDDHQLWETT 601 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + +V ++ + + LMG + + R +FI+E A + Sbjct: 602 MDPENRLMAKVTVDD----AAEADRVFDMLMGDRVEPRREFIEENAVY 645 >gi|253751556|ref|YP_003024697.1| topoisomerase IV subunit B [Streptococcus suis SC84] gi|253753457|ref|YP_003026598.1| topoisomerase IV subunit B [Streptococcus suis P1/7] gi|253755717|ref|YP_003028857.1| topoisomerase IV subunit B [Streptococcus suis BM407] gi|226237524|dbj|BAH47272.1| topoisomerase IV subunit B [Streptococcus suis] gi|251815845|emb|CAZ51453.1| topoisomerase IV subunit B [Streptococcus suis SC84] gi|251818181|emb|CAZ55981.1| topoisomerase IV subunit B [Streptococcus suis BM407] gi|251819703|emb|CAR45521.1| topoisomerase IV subunit B [Streptococcus suis P1/7] gi|292558203|gb|ADE31204.1| topoisomerase IV subunit B [Streptococcus suis GZ1] Length = 647 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 372/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F + G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L +V + ++ E+EE+++ G++ ++ E+ Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G V+ A+ + + + S+ N + T +GGTHE+GL++A+ Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + ++ LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639 >gi|149010518|ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75] gi|168490941|ref|ZP_02715084.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC0288-04] gi|182683766|ref|YP_001835513.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14] gi|225856520|ref|YP_002738031.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae P1031] gi|303254054|ref|ZP_07340171.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455] gi|303260740|ref|ZP_07346699.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293] gi|303263098|ref|ZP_07349028.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS292] gi|303267485|ref|ZP_07353336.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457] gi|303269831|ref|ZP_07355577.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458] gi|307127597|ref|YP_003879628.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 670-6B] gi|6851037|emb|CAA91550.2| DNA topoisomerase IV [Streptococcus pneumoniae] gi|73916356|gb|AAZ93046.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916376|gb|AAZ93056.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916382|gb|AAZ93059.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916392|gb|AAZ93064.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916412|gb|AAZ93074.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916424|gb|AAZ93080.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916436|gb|AAZ93086.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916442|gb|AAZ93089.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|147764999|gb|EDK71928.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75] gi|182629100|gb|ACB90048.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14] gi|183574686|gb|EDT95214.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC0288-04] gi|225725021|gb|ACO20873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae P1031] gi|301793990|emb|CBW36388.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV104] gi|301801677|emb|CBW34382.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV200] gi|302598990|gb|EFL66019.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455] gi|302635751|gb|EFL66256.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS292] gi|302638108|gb|EFL68584.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293] gi|302640628|gb|EFL71029.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458] gi|302642991|gb|EFL73287.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457] gi|306484659|gb|ADM91528.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 670-6B] gi|332076131|gb|EGI86597.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41301] gi|332077265|gb|EGI87727.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17545] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|222151258|ref|YP_002560414.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402] gi|222120383|dbj|BAH17718.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402] Length = 671 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 245/654 (37%), Positives = 363/654 (55%), Gaps = 33/654 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A++ Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE + G+ N I V Sbjct: 2 ANNQYNDESIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEILDNSIDEALNGHGNEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ + +TV DNGRG+P H K T E+I T LHAGGKF Y+ +GGLHGVG Sbjct: 62 VLNADDSVTVTDNGRGMPTGLHK--TGKPTPEVIFTVLHAGGKFGQGGYKTTGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L VT+ IF Q+F G +P++ LE+ K + GT +TF+PDP IF Sbjct: 120 SVVNALSSWLEVTIHNNGKIFKQRFQDGGVPVTTLEEIGKSKK-TGTTVTFKPDPSIFKQ 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L +K S + E+ E FY+ GLK ++ E Sbjct: 179 TVKFNFDTLSERLRESAFLLNNLKITISDLRNNEER-----HEVFYYEDGLKDFVNFVNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + +H VE A + ++ I S+ N + T +GGTHE G++ A Sbjct: 234 GKETLHEVAKFSGK----SHDIEVEVAFQFNDQYSETILSFVNNVRTKDGGTHEVGMKTA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 290 ITRVFNEYARKIGELKAKDKNLDGNDIREGMTAIISVKIPENLLQFEGQTKSKLGTSEAR 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V+ L + Y +N + + KL++ ++ ++ R RK RE R K L Sbjct: 350 SAVDGVLSEQLPFYFEENGVLSQKLVKKAVKAAQARDAARKAREEARNGKKNKRKETLLS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 410 GKLTPAQSKDTSRNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + + +D Y+K+IIMTDAD DGAHI LLLTFF++ M LI+ Sbjct: 470 EEISTIIHTIGAGVGNDFEVKDANYDKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAG 529 Query: 571 HLFLISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+++++G YA ++ + + ++ K + R+KGLGEM A Sbjct: 530 KVYIALPPLYKVSKGKGKNEVIEYAWTDDELKGVQKKVGK----GFILQRYKGLGEMNAD 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ RTL+RVEI+ +L S K ++ LMG K + R +I+ F Sbjct: 586 QLWDTTMNPETRTLIRVEIDDELRSAKR----VSTLMGDKVEPRRDWIERHVEF 635 >gi|308190314|ref|YP_003923245.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER] gi|319777710|ref|YP_004137361.1| DNA gyrase subunit b [Mycoplasma fermentans M64] gi|307625056|gb|ADN69361.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER] gi|318038785|gb|ADV34984.1| DNA gyrase subunit B [Mycoplasma fermentans M64] Length = 640 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 257/653 (39%), Positives = 373/653 (57%), Gaps = 23/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S YDAS+I++LEGLE VR+RPGMYIG T + LHHL E++DN++DE +AG+AN +E++ Sbjct: 2 SKEYDASNIKVLEGLEAVRVRPGMYIGTTGIRGLHHLIWEIVDNSVDEAMAGFANKVEIT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G++ V+DNGRGIP HPK ST+E +LT LHAGGKFD+ +Y++SGGLHGVG S Sbjct: 62 ITKDGYIDVIDNGRGIPTAVHPK-TGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGD 218 VVN LSD+ V V R + F+ G + E GTRI F PD I Sbjct: 121 VVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIMDK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D ++ + AYL+ ++ + +++ +EE++F GG+ Y++ Sbjct: 181 N-EWDKGVIVDHAKQIAYLNKGLRIIVNDERD-------KSREEYHFEGGIVDYVKELNT 232 Query: 279 NRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335 + LI ++ + E + + VE A+ + E + SY N I+T EGGTHESG Sbjct: 233 GQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFY 292 Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 AL R + Y + + +D+ V I+SV P F GQTK KL + DA+ Sbjct: 293 DALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V D F+ +L +NP EA +++ I + RL R+ RKT LPGK Sbjct: 353 MAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A +EL+IVEG+SAGGSAK RNR QA+LPLRGK++N +K+ N + Sbjct: 413 LADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I+ L+ ALG ++ LRY K+IIMTDADVDGAHI +LLLTFFY+ LIE + Sbjct: 473 ILSLITALGTGVGEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGFI 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I Q YA+++ K++I++ + K+ + R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGL--NQNQKVTVQRYKGLGEMDPEQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +L+V+I + LMG + R +FI++ A ++ ++ Sbjct: 591 MDPVNRKMLQVQIED----AARADWAFTTLMGDEVLPRREFIEQNAKYVKNID 639 >gi|218235058|ref|YP_002368410.1| DNA topoisomerase IV subunit B [Bacillus cereus B4264] gi|229111021|ref|ZP_04240580.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15] gi|229146164|ref|ZP_04274539.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24] gi|218163015|gb|ACK63007.1| DNA topoisomerase IV, B subunit [Bacillus cereus B4264] gi|228637223|gb|EEK93678.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24] gi|228672384|gb|EEL27669.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15] Length = 654 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|322392130|ref|ZP_08065592.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris ATCC 700780] gi|321145030|gb|EFX40429.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris ATCC 700780] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 363/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + E EF++ G++ ++ E+ Sbjct: 186 TDFKYHTISERLNESAFLLKNVTLSLMDKR-------TDETIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +K+ +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|73916378|gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNATLSLTDKRS-------DEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|328883698|emb|CCA56937.1| DNA gyrase subunit B [Streptomyces venezuelae ATCC 10712] Length = 676 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 252/671 (37%), Positives = 375/671 (55%), Gaps = 27/671 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N + ++ Y AS+I++LEGL+ VR RPGMYIG T E+ LHH+ EV+DN++DE +AG+A Sbjct: 12 SGNPNENNQYTASNIQVLEGLDAVRKRPGMYIGSTGERGLHHMVQEVVDNSVDEALAGHA 71 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V++ +G + VVDNGRGIPV K +E++LT LHAGGKF Y +SGGL Sbjct: 72 DTIDVTILADGAVRVVDNGRGIPVGIVA-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGL 130 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS ++ V + ++Q + G P +PL + EK ++ GT +TF DP Sbjct: 131 HGVGVSVVNALSTKVSVEIKTDGHRWTQDYKMGAPTAPLAQHEKT-DETGTSVTFWADPD 189 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------KYGIPEKE 261 IF + L + Q A+L+ + + ++E A+ Sbjct: 190 IFET-TEYSFETLSRRFQEMAFLNKGLTITLTDERESAKATVGADDPDAEAAAEPAARTV 248 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCN 320 ++++ GG+ +++ + + + ++E A+ W E + S+ N Sbjct: 249 KYHYEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKALSLEVAMQWNSGYSEGVYSFAN 308 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378 I T EGGTHE G R ALT I KYA + ++ ++ DD+ I+SV + EP+ Sbjct: 309 IIHTHEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQ 368 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTKTKL + + + V+ A+ + + +L +NP+EA ++ I+ + R+ RK R++ Sbjct: 369 FEGQTKTKLGNTEVKTFVQRAVYEHLNDWLDRNPVEAADIIRKSIQAATARVAARKARDL 428 Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN QA+LP+RGKIL Sbjct: 429 TRRKGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 488 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +KI N ++ L+ A G + E LRY K+I+M DADVDG HI +LLLT Sbjct: 489 NVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLT 548 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEI 614 F ++ M L+E H+FL PPL++I G YA+ + + ++E K+ GK + I Sbjct: 549 FLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQSGKRIKEDSI 608 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 RFKGLGEM A +L+ T MD R L +V ++ D + LMG + R FI Sbjct: 609 QRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFI 664 Query: 675 QERASFIDDVG 685 Q A + + Sbjct: 665 QRNAKDVRFLD 675 >gi|73916360|gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916432|gb|AAZ93084.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKRS-------DEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|229174259|ref|ZP_04301792.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3] gi|228609116|gb|EEK66405.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3] Length = 654 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G IP + LEK K + GT I F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTKE-SGTTIHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+K++IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|168484709|ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1873-00] gi|172042106|gb|EDT50152.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1873-00] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE AI + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVAIQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|253731987|ref|ZP_04866152.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724397|gb|EES93126.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320143913|gb|EFW35685.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 694 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 33 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 92 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 93 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 150 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 151 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 210 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 211 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 265 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 266 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 321 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 322 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 381 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 382 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 441 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 442 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 501 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 502 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 561 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 562 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 617 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 618 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 667 >gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501] gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501] Length = 648 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DEV+AG+A I V Sbjct: 11 AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEVLAGFATKIHVI 70 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 71 IEKDNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 129 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V ++ ++ Q++ RG + L+ E+ ++ GT + F PDP+IF + Sbjct: 130 VVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKIIEQT-DRHGTTVHFTPDPEIFTETT 188 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD ++L + A+L+ ++ +E P E+++ GG+K+Y++ N+ Sbjct: 189 EFDFSKLATRIRELAFLNRGMRISIEDKRE-----EEPVINEYHYEGGIKSYVEYLNANK 243 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++I E + E++ VE ++ + + I S+ N I T EGGTHESG + ALT Sbjct: 244 TVIFPEPVYLEGEQQDI---AVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTALT 300 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 301 RVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 360 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP +++E ++ +R + RK A+ LPGKLADC Sbjct: 361 RLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADC 420 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 421 SSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 480 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 481 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 540 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y EE ++++ K + R+KGLGEM QL ET Sbjct: 541 PPLYGVKQGKNITYVQPGKNAEEELKQVVASLPAS--PKPSVQRYKGLGEMDDHQLWETT 598 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R + RV ++ + LMG + + R FI+E A ++ ++ Sbjct: 599 MDPSNRMMARVSVDDAI----AADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 647 >gi|326442166|ref|ZP_08216900.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 687 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + P +P ++ + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 10 ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 69 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P NK +E++LT LHA Sbjct: 70 EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 128 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P +PL + E+ Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 188 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 189 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 246 Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + +Y+ GG+ +++ + + + +VE A+ W Sbjct: 247 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 306 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + + S+ NTI T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 307 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 366 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I+ Sbjct: 367 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 426 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 427 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 486 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M DA Sbjct: 487 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 546 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++E Sbjct: 547 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 606 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 K+ GK + I RFKGLGEM A +L+ T MD R L +V ++ D + Sbjct: 607 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 662 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + + Sbjct: 663 LMGEDVEARRSFIQRNAKDVRFLD 686 >gi|254393574|ref|ZP_05008707.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] gi|197707194|gb|EDY53006.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 686 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + P +P ++ + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 9 ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 68 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P NK +E++LT LHA Sbjct: 69 EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 127 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P +PL + E+ Sbjct: 128 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 187 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 188 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 245 Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + +Y+ GG+ +++ + + + +VE A+ W Sbjct: 246 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 305 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + + S+ NTI T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 306 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 365 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I+ Sbjct: 366 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 425 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 426 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 485 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M DA Sbjct: 486 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 545 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++E Sbjct: 546 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 605 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 K+ GK + I RFKGLGEM A +L+ T MD R L +V ++ D + Sbjct: 606 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 661 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + + Sbjct: 662 LMGEDVEARRSFIQRNAKDVRFLD 685 >gi|294813745|ref|ZP_06772388.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces clavuligerus ATCC 27064] gi|294326344|gb|EFG07987.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces clavuligerus ATCC 27064] Length = 693 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 254/684 (37%), Positives = 378/684 (55%), Gaps = 25/684 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + P +P ++ + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 16 ADSGNPNENNPSTPVGSSGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVY 75 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P NK +E++LT LHA Sbjct: 76 EVVDNSVDEALAGHADTIQVTILADGGVRVVDNGRGIPVGIVP-SENKPAVEVVLTVLHA 134 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P +PL + E+ Sbjct: 135 GGKFGGGGYAVSGGLHGVGVSVVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEET 194 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 195 AE-TGTSVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGAD 252 Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + +Y+ GG+ +++ + + + +VE A+ W Sbjct: 253 TAEEAEQEQVRTVTYYYEGGIVDFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQW 312 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + + S+ NTI T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 313 NSQYTEGVYSFANTIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREG 372 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I+ Sbjct: 373 LTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQA 432 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 433 QTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 492 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M DA Sbjct: 493 MYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGIHEDFDIEKLRYHKIILMADA 552 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++E Sbjct: 553 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVEL 612 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 K+ GK + I RFKGLGEM A +L+ T MD R L +V ++ D + Sbjct: 613 GKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDD----AAQADDLFSV 668 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + + Sbjct: 669 LMGEDVEARRSFIQRNAKDVRFLD 692 >gi|15900737|ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae TIGR4] gi|111657635|ref|ZP_01408368.1| hypothetical protein SpneT_02001165 [Streptococcus pneumoniae TIGR4] gi|19864342|sp|Q59961|PARE_STRPN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|14972325|gb|AAK74981.1| topoisomerase IV, subunit B [Streptococcus pneumoniae TIGR4] gi|73916354|gb|AAZ93045.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916386|gb|AAZ93061.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916462|gb|AAZ93099.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TNEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|294012212|ref|YP_003545672.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] gi|292675542|dbj|BAI97060.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] Length = 658 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 344/657 (52%), Positives = 459/657 (69%), Gaps = 10/657 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN S + YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHL SEV+DN+MDE +AG+A Sbjct: 7 AANSSTAPQYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLASEVLDNSMDEAVAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV L+ LT+ DNGRGIPV+ HPKFP KS LE+ILTTLH+GGKF + Y SGGL Sbjct: 67 TRIEVLLEPGNRLTITDNGRGIPVDPHPKFPGKSALEVILTTLHSGGKFSDKAYATSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + VAR +F Q F++G+P S L+K N+RGT ++F PD + Sbjct: 127 HGVGISVVNALSISTVIEVARNKELFRQSFTQGLPSSDLQKVGAAPNRRGTSVSFIPDTE 186 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG+ F +RL ++ +SKAYL V+ W C E+ P + F FPGGL +L+ Sbjct: 187 IFGE-QKFKPSRLYRLARSKAYLFAGVEIRWKCAPELI-ADETPAEAVFQFPGGLADHLK 244 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333 ++ +R +S F+G + G VEWA+AW + + YCNTI T +GGTHE+G Sbjct: 245 EQVGDRECATSAFFSGSQDFPD-AAGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHETG 303 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 LR AL +GI+ + +L K+A I +DD++ S+ +LSVFIR+P+F QTK +L S +A Sbjct: 304 LRAALVKGIRAFGDLVGQKKAKDITADDIVTSSEIMLSVFIRDPQFQSQTKDRLTSPEAA 363 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 R VENA+RD FDHYL + LL +V++R +ERL+R++++EV RKTA RKLRLPG Sbjct: 364 RLVENAVRDHFDHYLSDHMERGKALLAYVLDRMDERLKRKQEKEVKRKTATNSRKLRLPG 423 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS + G E+F+VEGDSAGGSAKQAR+R QA+LPLRGKILNVASA + KI NQ Sbjct: 424 KLTDCSNDDPEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQ 483 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I D++ ALGC TR ++LRYE+++IMTDADVDGAHIA+LL+TFF+QEM +L+ + H Sbjct: 484 EIADMILALGCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGH 543 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+ G KS+YA D+ H+++IL K+ K+E+SRFKGLGEM QL+ET Sbjct: 544 LYLAQPPLYRLVAGGKSLYARDDAHREEILA--KEFKGKKVEVSRFKGLGEMNPGQLRET 601 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686 MD R+L+RV + D+ + ++ + +LMGT RF FIQE A+ +D+ + Sbjct: 602 TMDPKTRSLIRVTLPDDIEDRQQVRELVERLMGTNPAHRFAFIQENAANVDEESIDA 658 >gi|117927216|ref|YP_871767.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B] gi|117647679|gb|ABK51781.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B] Length = 666 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 253/664 (38%), Positives = 365/664 (54%), Gaps = 27/664 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG + I+V+ Sbjct: 10 ASSYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGACDRIDVT 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + VVDNGRGIPV+ HP + +E++LT LHAG KF Y++SGGLHGVG+S Sbjct: 70 LLADGGVRVVDNGRGIPVDEHP-GEKRPAVEVVLTVLHAGAKFGGRGYKVSGGLHGVGVS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V V R ++ Q + RG P PL++ + ++ GT +TF PDP+IF Sbjct: 129 VVNALSERLDVEVHRDGYVWRQSYRRGTPTGPLQR-GEPTDRTGTTVTFWPDPEIFET-T 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDK-------EIAEKY---GIPEKEEFYFPGGLK 270 F L + A+L+ + ++ + AEK P + + + GGL Sbjct: 187 RFSFETLANRLREIAFLNKGLTITLRDERPAEHLDSDDAEKPAGGDDPTEVYYRYDGGLV 246 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + I + + ++E A+ W + ++ NTI T EGGT Sbjct: 247 DYVAHLNATKEPAHRSIISFEAH-DPVSDMSLEAALQWNTGYTESVHTFANTINTHEGGT 305 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G R ALT + K+ E K+ + +D+ ILS+ ++EP+F GQTKTKL Sbjct: 306 HEEGFRAALTYLVNKFGEEWNLIKKKEDRLTGEDIREGLTAILSIKLKEPQFEGQTKTKL 365 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIR 445 + + + V+ D + +NP E ++ I+ + R+ RK R+ NRK + Sbjct: 366 GNTEVKSFVQTVCNDRLGEWFEKNPAEGKDIVRKAIQAATARIAARKARDLARNRKGLLG 425 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKL DC ELFIVEGDSAGGSA+Q R+ QAVLP+RGKILNV A + Sbjct: 426 GGGLPGKLVDCQSTNPEECELFIVEGDSAGGSARQGRDPRTQAVLPIRGKILNVERARID 485 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 K+ N ++ ++ ALG + LRY KV++M DADVDG HI +LLLT ++ M Sbjct: 486 KVLQNNEVQAVISALGTGVHDDFDLARLRYHKVVLMADADVDGQHIRTLLLTLLFRFMKP 545 Query: 566 LIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLG 621 L+E H++L PPL+RI +A+ + + ++E GK + I R+KGLG Sbjct: 546 LVEAGHVYLAQPPLYRIKWSNAPHEFAYSDRERDGLVEAGLAAGKKLPKEQGIQRYKGLG 605 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM +L T MD +R LL+V ++ + + LMG ++R FIQ A + Sbjct: 606 EMNPEELWTTTMDPAQRVLLQVSLDD----AARADEIFSILMGDDVEQRRAFIQRNAKDV 661 Query: 682 DDVG 685 + Sbjct: 662 RFLD 665 >gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO] gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933] gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502] gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733] gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410] gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408] gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12] gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15] gi|258615266|ref|ZP_05713036.1| DNA gyrase subunit B [Enterococcus faecium DO] gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68] gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6] gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF] gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1] gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039] gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162] gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071] gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980] gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636] gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679] gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317] gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04] gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C] gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082] gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A] gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B] gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01] gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO] gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933] gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502] gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733] gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410] gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408] gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12] gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15] gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68] gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6] gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF] gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071] gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636] gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679] gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317] gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039] gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162] gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980] gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1] gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01] gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B] gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A] gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C] gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04] gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082] Length = 648 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 376/653 (57%), Gaps = 24/653 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VR RPGMYIG T + LHHL E++DN++DEV+AG+A I V Sbjct: 11 AKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEVLAGFATKIHVI 70 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 71 IEKDNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 129 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V ++ ++ Q++ RG + L+ E+ ++ GT + F PDP+IF + Sbjct: 130 VVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKIIEQT-DRHGTTVHFTPDPEIFTETT 188 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD ++L + A+L+ ++ +E P E+++ GG+K+Y++ N+ Sbjct: 189 EFDFSKLATRIRELAFLNRGMRISIEDKRE-----EEPVINEYHYDGGIKSYVEYLNANK 243 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++I E + E++ VE ++ + + I S+ N I T EGGTHESG + ALT Sbjct: 244 TVIFPEPVYLEGEQQDI---AVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTALT 300 Query: 340 RGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++S+ +P+F GQTKTKL + + + + Sbjct: 301 RVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTD 360 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP +++E ++ +R + RK A+ LPGKLADC Sbjct: 361 RLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADC 420 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 421 SSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 480 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + RY K++IMTDADVDGAHI +LLLT FY+ M ++E ++++ Sbjct: 481 FTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQ 540 Query: 577 PPLFRITQGTKSVYAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+ + QG Y EE ++++ K + R+KGLGEM QL ET Sbjct: 541 PPLYGVKQGKNITYVQPGKNAEEELKQVVASLPAS--PKPSVQRYKGLGEMDDHQLWETT 598 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R + RV ++ + LMG + + R FI+E A ++ ++ Sbjct: 599 MDPSNRMMARVSVDDAI----AADQIFEMLMGDRVEPRRAFIEENAHYVKNLD 647 >gi|322376402|ref|ZP_08050895.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334] gi|321282209|gb|EFX59216.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334] Length = 647 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGEVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 IDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|289167743|ref|YP_003446012.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6] gi|288907310|emb|CBJ22146.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6] Length = 649 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVKDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|329116682|ref|ZP_08245399.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020] gi|326907087|gb|EGE54001.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020] Length = 650 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 253/654 (38%), Positives = 375/654 (57%), Gaps = 22/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A Sbjct: 6 KQSNDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGL Sbjct: 66 SHIEVYIEEDNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS +L V V + +I Q+F RGI L+ + + GT + F PDP+ Sbjct: 125 HGVGSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTGTTVHFTPDPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD +L K Q A+L+ ++ + + E + +++++ GG+ +Y++ Sbjct: 184 IFTETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIE-----QVKDYHYEGGIASYVE 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E + +I E G VE A+ + + S+ N I T EGGTHE G Sbjct: 239 FLNEKKDVIIEHPIFTDGEMDGI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQG 295 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 FRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + D +L++NP A K+++ I S+ R+ ++ RE +K+ + LP Sbjct: 356 VVKITNRLFSDALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N Sbjct: 416 GKLADCSSNNASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILAN 475 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L A+G +++ RY K++IMTDADVDGAHI +LLLT Y+ M ++E Sbjct: 476 EEIRSLFTAMGTGFGAEFDVAKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAG 535 Query: 571 HLFLISPPLFRITQGTKSV-YAH---DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PP++ + G++ Y ++E K E G+ + + R+KGLGEM Sbjct: 536 FVYIAQPPIYGVKVGSEIKEYIQPGTNQEELLKASLEKYSVGRSRPTVQRYKGLGEMDDH 595 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 QLWETTMDPEHRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645 >gi|223932477|ref|ZP_03624479.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591] gi|330832700|ref|YP_004401525.1| topoisomerase IV subunit B [Streptococcus suis ST3] gi|223898931|gb|EEF65290.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591] gi|329306923|gb|AEB81339.1| topoisomerase IV subunit B [Streptococcus suis ST3] Length = 649 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 372/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F + G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L +V + ++ E+EE+++ G++ ++ E+ Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G V+ A+ + + + S+ N + T +GGTHE+GL++A+ Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKTEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + ++ LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639 >gi|307709026|ref|ZP_07645486.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564] gi|307620362|gb|EFN99478.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564] Length = 647 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 244/653 (37%), Positives = 364/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + LEE +KH + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGE----LEELRKHFGKGATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVRF 639 >gi|218898691|ref|YP_002447102.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842] gi|228902097|ref|ZP_04066261.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222] gi|228966492|ref|ZP_04127545.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|229075491|ref|ZP_04208480.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18] gi|229098040|ref|ZP_04228990.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29] gi|229117058|ref|ZP_04246440.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3] gi|218543471|gb|ACK95865.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842] gi|228666462|gb|EEL21922.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3] gi|228685477|gb|EEL39405.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29] gi|228707740|gb|EEL59924.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18] gi|228793214|gb|EEM40764.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228857523|gb|EEN02019.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222] Length = 654 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|229162430|ref|ZP_04290391.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803] gi|228620909|gb|EEK77774.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803] Length = 654 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ Q+F G IP + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNVYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|199599527|ref|ZP_03212915.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001] gi|229552216|ref|ZP_04440941.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258508414|ref|YP_003171165.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG] gi|258539627|ref|YP_003174126.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus Lc 705] gi|199589568|gb|EDY97686.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001] gi|229314402|gb|EEN80375.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257148341|emb|CAR87314.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus GG] gi|257151303|emb|CAR90275.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus Lc 705] gi|259649728|dbj|BAI41890.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG] Length = 670 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 368/660 (55%), Gaps = 37/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP +F Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGGLQKLGKVNEPNGTTITFKPDPTVFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F+ L + + A+L + + ++ + +++++P GL ++++ Sbjct: 181 TTV-FNYDTLAERLRESAFLLKAITINLTDER-------TGKHDQYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + I S+ N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENIISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A + ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLKDRDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ I+ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDHLATFLMENGEESQELVRKAIKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y K+IIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 469 NEEINTMIYTIGAGVGADFDIQQANYNKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRVYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F D+ Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHHVKF--DLD 638 >gi|307704622|ref|ZP_07641524.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597] gi|307621824|gb|EFO00859.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597] Length = 647 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E F++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKRTDEEIE-------FHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|268324621|emb|CBH38209.1| DNA gyrase subunit B [uncultured archaeon] Length = 635 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 372/650 (57%), Gaps = 22/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++Y A I++L+ L VR RP MYIG T + LHHL +EVIDN++DE I G+ I V Sbjct: 2 EESYSAKDIQVLKDLTAVRKRPAMYIGDTGTRGLHHLANEVIDNSVDEAIIGFCTSIVVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +TV DNGRGIPV+ H ++ N S LE+++T LHAGGKFDN Y+++GGLHGVGIS Sbjct: 62 IHPDNSVTVTDNGRGIPVDMHSEY-NLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK---KEKVRNKRGTRITFRPDPKIFG 217 VVNALS+ V V R+ + Q++ G + +++ + + GTR+ F+PD IFG Sbjct: 121 VVNALSEWQEVEVLREGKRYYQRYEHGKAVCEVKELSYTGENNGECGTRVRFKPDSTIFG 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FDA L + A+L+ + ++ E+ F + GG+ ++L+ Sbjct: 181 VY-EFDAHLLATRLRELAFLNRGLSLSLKDERSGEERA-------FKYEGGITSFLEYIN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ ++ S I T + EK V + + + I S+ N + T EGG H SG + Sbjct: 233 RNKKVLHSPI-TFEGEKDDV---KVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKA 288 Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 ALTR + +Y + + +++ DD+ ++S+ +REP+F GQTKTKL + + + V Sbjct: 289 ALTRVLNEYGKSNNMLKKVNLDGDDVREGLAAVISLKLREPQFEGQTKTKLGNSEVKGIV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 E+ +R+ +L +NP + ++ +E S R R RE+ RK LPGKLADC Sbjct: 349 ESFVREHLWDFLDENPKDGDAIIRKALEASRAREAARHAREIVRKKDSFADSLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ E++IVEGDSAGGSAKQAR+++ QA+LP+RGKILNV A +KI + +I L Sbjct: 409 SERDPAKKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTL 468 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + E RY K+IIM+DADVDGAHI +LLLTFFY+ M +L+ H+++ Sbjct: 469 ITALGAGIGDDFDMEKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVSANHIYVAL 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + +G + YA ++ IL+E K G ++I +KGLGEM QL ET M+ Sbjct: 529 PPLYMVKKGKEIRYAFSDDEYVNILDELNVKEGDAGVKIQHYKGLGEMNPEQLWETTMNP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + V + + LMG + + R FIQ A + ++ Sbjct: 589 ATRGIKLVTLED----AAEVDWLFTVLMGEEVEPRRNFIQAHAKEVMNLD 634 >gi|283958118|ref|ZP_06375569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|283790267|gb|EFC29084.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus A017934/97] Length = 665 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDILKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|89101240|ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] gi|89084046|gb|EAR63223.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] Length = 661 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 247/651 (37%), Positives = 366/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY + I V + Sbjct: 11 DYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEALAGYGDHIIVKIH 70 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T EIILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 71 KDNSISVQDKGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 128 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V + R ++ Q+F G P + LEK K N+ GT I F+PDP IF Sbjct: 129 NALSEWLVVKIRRNGFVYEQRFENGGKPATTLEKVGKT-NQSGTVIHFKPDPAIFSTTV- 186 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ A ++ F+F G++ +++ E + Sbjct: 187 YNYETLCERLRESAFLMKGMKIELIDERHDA-------RDLFHFETGIEAFVEYLNEEKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 ++ + + E + V++A + + E S+ N + T +GGTHE+G + A+TR Sbjct: 240 VLHPV-VSFEGEHN---QIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTR 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ V Sbjct: 296 VFNEYARKVGLLKEKDKNLDGSDIREGFSAIISVRVPEELLQFEGQTKGKLGTSEARSAV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +NP ++ L++ I+ + R RK RE R RK L GKL Sbjct: 356 DAVVSEHLSYFLEENPNISSLLIKKAIKAYQAREAARKAREEARGGKKRKRSEAVLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 416 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEI 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + + ED+ YEKV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 476 NTIIHAIGAGVGADFNVEDVNYEKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 535 Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K YA ++ Q +++ K I R+KGLGEM A QL Sbjct: 536 IALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIGK----GYMIQRYKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL+RV I+ + + LMG K + R K+I+ +F Sbjct: 592 ETTMDPESRTLIRVRIDD----AARAERRVTTLMGDKVEPRRKWIETNVAF 638 >gi|229018787|ref|ZP_04175636.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273] gi|229025031|ref|ZP_04181459.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272] gi|228736237|gb|EEL86804.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272] gi|228742537|gb|EEL92688.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273] Length = 662 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 15 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 74 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 75 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 132 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R +I+ Q+F G IP + LEK K + GT + F+PD IF Sbjct: 133 NALSEWLVVTIKRDGSIYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 190 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 191 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 244 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 299 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 300 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 359 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 360 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 419 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 420 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 479 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 480 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 539 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 540 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 595 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 596 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 642 >gi|194398307|ref|YP_002037488.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae G54] gi|194357974|gb|ACF56422.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae G54] Length = 647 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P+ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVMTLKKVGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|148988271|ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73] gi|147925952|gb|EDK77026.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73] Length = 647 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGENNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLIKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|302535567|ref|ZP_07287909.1| DNA gyrase subunit B [Streptomyces sp. C] gi|302444462|gb|EFL16278.1| DNA gyrase subunit B [Streptomyces sp. C] Length = 666 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 253/671 (37%), Positives = 377/671 (56%), Gaps = 26/671 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + S NYDAS+I++LEGL+ VR RPGMYIG T E+ LHHL EV+DN++DE +AG+ Sbjct: 2 ADSGDSNEKNYDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHAGGKF Y +SGG Sbjct: 62 ADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS ++ V V ++Q + G+P +PL K E+ GT +TF D Sbjct: 121 LHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEETAE-TGTSVTFWADG 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------KYGIPEKE 261 IF + L + Q A+L+ + + ++E A+ Sbjct: 180 DIFET-TEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAAEPSARTV 238 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++++ GG+ +++ + + + +VE A+ W + + S+ N Sbjct: 239 KYFYEGGIVDFVKYLNSRKGELIHPTVIDVESEDKERMLSVEIAMQWNSQYTEGVYSFAN 298 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPE 378 TI T EGGTHE G R ALT + +YA + ++ ++ +D+ I+SV + EP+ Sbjct: 299 TIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQ 358 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTKTKL + +A+ V+ + + + + +NP+EA ++ I+ + R+ RK R++ Sbjct: 359 FEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIVRKAIQAATARVAARKARDL 418 Query: 439 NRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN QA+LP+RGKIL Sbjct: 419 TRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 478 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +KI N ++ L+ A G + E LRY K+I+M DADVDG HI +LLLT Sbjct: 479 NVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLT 538 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEI 614 F ++ M L+E H++L PPL++I G YA+ + + ++E K++GK + I Sbjct: 539 FLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSI 598 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 RFKGLGEM A +L+ T MD + R L +V ++ D + LMG + R FI Sbjct: 599 QRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLFSVLMGEDVEARRSFI 654 Query: 675 QERASFIDDVG 685 Q A + + Sbjct: 655 QRNAKDVRFLD 665 >gi|228940682|ref|ZP_04103245.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973600|ref|ZP_04134182.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980158|ref|ZP_04140472.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407] gi|228779516|gb|EEM27769.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407] gi|228786061|gb|EEM34058.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818926|gb|EEM64988.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941316|gb|AEA17212.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 654 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|293365618|ref|ZP_06612327.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC 35037] gi|307703568|ref|ZP_07640510.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037] gi|291315986|gb|EFE56430.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC 35037] gi|307622975|gb|EFO01970.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037] Length = 647 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEIALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|116492722|ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745] gi|116102872|gb|ABJ68015.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745] Length = 679 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 369/657 (56%), Gaps = 33/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +++ +YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY Sbjct: 2 AKTSKTSYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGKE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + +TVVD+GRG+PV H K T E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTIQADNSITVVDHGRGMPVGMHK--SGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS++L V + R + + F + G P+ L+K K NK GT +TF+PD +I Sbjct: 120 VGASVVNALSEKLTVEIVRDKVKYEETFVNGGHPVGTLKKVGKTTNKNGTTVTFKPDKEI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F+ L + A+L VK + +E E + EE+ + G+K ++ Sbjct: 180 FTTTV-FNFNTLAVRLRESAFLLRGVKITLTDRREGHE-----QHEEYLYDEGIKQFVDY 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 E++ + + KKG VE A + + I S+ N + T +GGTHE G+ Sbjct: 234 LNEDKDTLGNI-MYFDGTKKGI---EVEVAGQYNDGYSETILSFVNNVRTRDGGTHEVGM 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 R T+ ++A ++ ++ D+ ++SV I E EF GQTK KL + Sbjct: 290 RSGWTKAFNEFARKMGLLKEKDKNLEGSDVREGLSAVISVRIPEELLEFEGQTKEKLGTP 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448 +A+ V+ + + +L++N A +L+ I E R+ RK R+ +R +K + Sbjct: 350 EARPIVDAIVSEQLGFFLMENGEFAQQLVRKAINAREARVAARKARDESRTGKRKKKQER 409 Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL + ELF+VEGDSAGGSAKQ RNR QA+LPLRGK+LN A + I Sbjct: 410 ILSGKLTPAQSKNSKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDI 469 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G +++ +D Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I Sbjct: 470 VKNEEINTIIYTIGAGVGTEFNVQDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMI 529 Query: 568 EQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 + +++ PPL+++ +G K YA +E + + ++ + + RFKGLGEM Sbjct: 530 DAGKIYIALPPLYKLQKGLNKKVKIAYAWTDEELESVSKQMGR----GFSLQRFKGLGEM 585 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL+RV I+ D + + LMG K + R K+I+ +F Sbjct: 586 NADQLWETTMNPETRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVAF 638 >gi|322375407|ref|ZP_08049920.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300] gi|321279670|gb|EFX56710.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300] Length = 649 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G +E A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEENG---FQIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 IVDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|312864869|ref|ZP_07725100.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415] gi|311099996|gb|EFQ58209.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415] Length = 647 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 364/652 (55%), Gaps = 36/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + IEV L Sbjct: 10 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDRIEVVLH 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 QDGSVSVTDSGRGMPTGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ LEK ++K GT++TF+PD IF Sbjct: 128 NALSSWLEVEITRDGAIYKQRFENGGKPVTELEKIGTAPKSKSGTKVTFKPDDSIFST-T 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V ++ E EF++ G++ ++ E++ Sbjct: 187 DFKFNTISERLKESAFLLKEVTLVLKDERTEEE-------VEFHYENGVQDFVHYLNEDK 239 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ + E +G V+ A+ + + + S+ N + T +GGTHE+GL+ A+T Sbjct: 240 ETLTPV-IYFEGEDQG---FQVQVAMQYNDGFSDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + + YA T + ++ D +LS+ + +F GQTK KL S A+ Sbjct: 296 KAMNDYARKTGLLKDKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L GK Sbjct: 356 VDGLVSDQLTFFLMENGELASSLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 416 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMPDILKNEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 476 INTMIYTIGAGVGPDFSLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 535 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G + YA + + + ++F + + R+KGLGEM A QL Sbjct: 536 YIALPPLYKMSKGKGKKEQVEYAWTDGELEDLRQKFGRGAL----LQRYKGLGEMNADQL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + RTL+RV I L + ++ LMG KA R ++I++ F Sbjct: 592 WETTMDPDNRTLIRVTIED----LARAERRVSVLMGDKAAPRRQWIEDNVKF 639 >gi|52549974|gb|AAU83823.1| DNA gyrase subunit B [uncultured archaeon GZfos34A6] Length = 635 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 247/650 (38%), Positives = 371/650 (57%), Gaps = 22/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++Y A I++L+ L VR RP MYIG T + LHHL +EVIDN++DE + G+ I V Sbjct: 2 EESYSAKDIQVLKDLTAVRKRPAMYIGDTGTRGLHHLANEVIDNSVDEALIGFCTSIVVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +TV DNGRGIPV+ H ++ N S LE+++T LHAGGKFDN Y+++GGLHGVGIS Sbjct: 62 IHPDNSVTVTDNGRGIPVDMHSEY-NLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG---TRITFRPDPKIFG 217 VVNALS+ V V R + Q++ G P+ +++ G TR+TF+PD IFG Sbjct: 121 VVNALSEWQEVEVVRDGKRYFQRYEYGKPVCEVKELSYTDENNGECGTRVTFKPDSTIFG 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FDA L + A+L+ + ++ ++ F + GG+ ++L+ Sbjct: 181 VY-EFDAHILATRLRELAFLNRGLLLSLKDERSGEDRA-------FKYDGGITSFLEYIN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+ ++ S I T + EK V + + + I S+ N + T EGG H SG + Sbjct: 233 RNKKVLHSPI-TFEGEKDDV---KVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKA 288 Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 ALTR + +Y + + +++ DD+ I+S+ +REP+F GQTKTKL + + + V Sbjct: 289 ALTRVLNEYGKSNNMLKKVNLDGDDVREGLAAIISLKLREPQFEGQTKTKLGNSEVKGIV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 E+ +R+ +L +NP +A ++ +E S R R RE+ RK LPGKLADC Sbjct: 349 ESFVREHLWDFLDENPKDADAIIRKALEASRAREAARHAREIVRKKDSFADSLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ E++IVEGDSAGGSAKQAR+++ QA+LP+RGKILNV A +KI + +I L Sbjct: 409 SERDPAKKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTL 468 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + + RY K+IIM+DADVDGAHI +LLLTFFY+ M +L+ H+++ Sbjct: 469 ITALGAGIGDDFDMQKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVTANHIYVAL 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ + +G + YA ++ IL++ K G ++I +KGLGEM QL ET M+ Sbjct: 529 PPLYMVKKGKEIRYAFSDDEYVNILDDLNVKEGDAGVKIQHYKGLGEMNPEQLWETTMNP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R + V + + LMG + + R FI A + ++ Sbjct: 589 ATRGIKLVTLED----AAEVDWLFTVLMGEEVEPRRNFIHAHAKEVMNLD 634 >gi|317131014|ref|YP_004090328.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3] gi|315468993|gb|ADU25597.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3] Length = 642 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 367/654 (56%), Gaps = 25/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + +Y A I++LEGLE VR RPGMYIG T LHHL E++DNA+DE +AGY + I Sbjct: 7 EPENKDYGADQIQVLEGLEAVRKRPGMYIGSTGSPGLHHLVYEIVDNAIDEALAGYCHNI 66 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + V D+GRGIPV HPK + ++ T LHAGGKF Y++SGGLHGV Sbjct: 67 HVEILPENVIRVTDDGRGIPVGIHPKM-GIPAVTVVFTMLHAGGKFGGGGYKVSGGLHGV 125 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS+ L V VA + ++ Q++ RG P++ LE ++ G+ ITF+PD +IF Sbjct: 126 GASVVNALSEWLEVEVAHEGKLYQQRYERGTPVTKLEIVGDT-DRVGSIITFKPDCEIFE 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +D +L + +A+L+ ++ +E + + GG++ ++Q Sbjct: 185 TCV-YDYDIILARLREQAFLNAGIRIVLEDKREP-----GGRNDSLCYEGGIREFVQYVH 238 Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + + + + ++ + + E A+ + + I S+ N I T EGGTHE+G Sbjct: 239 KRKGLTALHPDVIYFSASAETSM---AEVALQYNDSYNEVIYSFANDIHTVEGGTHETGF 295 Query: 335 RVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR Y + + +D+ ++SV + E F GQTK KL + + Sbjct: 296 KSALTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKLEEALFEGQTKAKLGNTEM 355 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 ++ V+ L D Y +NP A + + + R+ + RK+A+ LPG Sbjct: 356 RQLVDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARKARDLSRRKSALDSASLPG 415 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS TE++IVEGDSAGGSAK+ R+R QA+LPL GK+LNV A +++ N+ Sbjct: 416 KLADCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLWGKMLNVEKARLDRVYGNE 475 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++M +V ALG + LRY K+IIM DADVDG+HI +LLLTFF++ M LIE+ H Sbjct: 476 KLMPVVTALGTGIGEDFDISKLRYGKIIIMADADVDGSHIRTLLLTFFFRFMRPLIEEGH 535 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPLF+I++G KSVYA ++ + + E GK +I R+KGLGEM QL ET Sbjct: 536 IYIAQPPLFKISKGKKSVYAFSDKERDTAIAEMG----GKCDIQRYKGLGEMDPIQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ + RT+LRV D+ + LMG K + R +FI+ A + ++ Sbjct: 592 TMNPDGRTILRV----DMEDAAAADEIFTILMGDKVEPRREFIEVNAGKVRELD 641 >gi|257388769|ref|YP_003178542.1| DNA gyrase subunit beta [Halomicrobium mukohataei DSM 12286] gi|257171076|gb|ACV48835.1| DNA gyrase, B subunit [Halomicrobium mukohataei DSM 12286] Length = 641 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/650 (37%), Positives = 370/650 (56%), Gaps = 22/650 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A I++LEGL+ V+ RP MYIG TD + LHHL EV+DN++DE +AG+ + I V++ Sbjct: 6 DYGAEQIQVLEGLQAVQKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDEITVTIH 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D+GRGIPV+ H K ++ LE+I+T LHAGGKFD+ +Y++SGGLHGVG+SVV Sbjct: 66 EDDSVSVSDDGRGIPVDTHEKH-DRPALEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDKA 220 NALS L V V R ++ Q+F G P LE + + + GT+I F PD +IF Sbjct: 125 NALSKWLEVEVKRDGAVWKQRFDHGEPEDELERVRDMEPDEETGTQIRFWPDDEIFEA-T 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + L + A+L+ V+ +++ + E F + GG+K ++Q E + Sbjct: 184 DFVYSTLASRLRELAFLNSGVEISLVDERD-------GDSETFVYEGGIKEFVQYLNETK 236 Query: 281 SLISSEIFTGKTEKKGTHR-GTVEWAIA-WCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E++ VE A+ E I ++ N I T EGG+H +G + AL Sbjct: 237 EPLHRDVIYFEDEEQIEDGPVQVEIAMQGTAELQGSIHAFANNINTREGGSHMTGFKTAL 296 Query: 339 TRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + YA + +D+ ++S+ +P+F GQTKTKL + + + V Sbjct: 297 TRTVNDYATSNGLLNDLDDTLSGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 E+A+ D + +NP A ++ + V + ++ + RK+A+ LPGKL+D Sbjct: 357 ESAMHDGLGTFFEENPDTAEAIVGKAVEAAKARKAAKKAEELTRRKSALESTALPGKLSD 416 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C ELF+VEGDSAGGSAKQ RN QA+LP+RGKILNV ++I N I + Sbjct: 417 CQTRDPDDAELFVVEGDSAGGSAKQGRNPEFQAILPIRGKILNVERHRLDRILENDSIRN 476 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG ++ ED+RY+++I+MTDADVDGAHI +LLLT FY+ M L+E +++ Sbjct: 477 VITALGTGIGDEFDVEDIRYKRIIMMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVYAA 536 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+ ++ A E + +++EE K G ++ RFKGLGEM QL +T MD Sbjct: 537 QPPLYRVRYNGETYDAMTEAERDRLVEE--KCGGDPDQVQRFKGLGEMNPQQLWDTTMDP 594 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++R L ++ I + LMG + R +FI+E + D V Sbjct: 595 DQRILKQITIED----AAAADKMFSVLMGDAVEPRKEFIKEHSPEADWVD 640 >gi|260101874|ref|ZP_05752111.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus helveticus DSM 20075] gi|260084302|gb|EEW68422.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus helveticus DSM 20075] gi|328468764|gb|EGF39735.1| DNA gyrase subunit B [Lactobacillus helveticus MTCC 5463] Length = 654 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 248/668 (37%), Positives = 366/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V + Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLEQ 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + + GG+K Y+ + + ++ E ++ G VE A+ + + ++ N Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438 GQTKTKL + DA+ V+ + + F +L++NP K++E R + RE Sbjct: 353 EGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKHAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|295427868|ref|ZP_06820500.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128226|gb|EFG57860.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16] gi|298694654|gb|ADI97876.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED133] Length = 663 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|168485800|ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1087-00] gi|169834087|ref|YP_001694306.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae Hungary19A-6] gi|73916366|gb|AAZ93051.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916388|gb|AAZ93062.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916404|gb|AAZ93070.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|168996589|gb|ACA37201.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae Hungary19A-6] gi|183570930|gb|EDT91458.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1087-00] Length = 647 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|88195079|ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221479|ref|YP_001332301.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. Newman] gi|161509519|ref|YP_001575178.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848358|ref|ZP_06789105.1| DNA topoisomerase IV [Staphylococcus aureus A9754] gi|59799890|sp|P0A0K9|PARE_STAAW RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|84029386|sp|Q5HG65|PARE_STAAC RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|112823997|sp|Q2FYS5|PARE_STAA8 RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|112823998|sp|P0C1S7|PARE_STAAU RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|561879|gb|AAA53115.1| gyrase-like protein beta subunit [Staphylococcus aureus] gi|1777320|dbj|BAA11086.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] gi|87202637|gb|ABD30447.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374279|dbj|BAF67539.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368328|gb|ABX29299.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825158|gb|EFG41580.1| DNA topoisomerase IV [Staphylococcus aureus A9754] gi|320140314|gb|EFW32172.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 663 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|323441138|gb|EGA98845.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O11] Length = 663 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|21282970|ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MW2] gi|57650358|ref|YP_186242.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus COL] gi|87160112|ref|YP_493947.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141851|ref|ZP_03566344.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451752|ref|ZP_05699776.1| topoisomerase IV subunit B [Staphylococcus aureus A5948] gi|262049827|ref|ZP_06022690.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30] gi|262052164|ref|ZP_06024371.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3] gi|282920622|ref|ZP_06328343.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765] gi|284024355|ref|ZP_06378753.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 132] gi|297207992|ref|ZP_06924423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912076|ref|ZP_07129519.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH70] gi|304381069|ref|ZP_07363723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204409|dbj|BAB95106.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MW2] gi|57284544|gb|AAW36638.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus COL] gi|87126086|gb|ABD20600.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|257860583|gb|EEV83407.1| topoisomerase IV subunit B [Staphylococcus aureus A5948] gi|259159908|gb|EEW44945.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3] gi|259162051|gb|EEW46630.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30] gi|269940852|emb|CBI49234.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TW20] gi|282594284|gb|EFB99271.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765] gi|296887235|gb|EFH26137.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886322|gb|EFK81524.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH70] gi|302751185|gb|ADL65362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340378|gb|EFM06318.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196388|gb|EFU26740.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|329314032|gb|AEB88445.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus T0131] gi|329730909|gb|EGG67285.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21189] Length = 665 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|221231635|ref|YP_002510787.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669] gi|73916416|gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916420|gb|AAZ93078.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916422|gb|AAZ93079.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916428|gb|AAZ93082.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916430|gb|AAZ93083.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916444|gb|AAZ93090.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916446|gb|AAZ93091.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|220674095|emb|CAR68613.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669] Length = 647 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|257425420|ref|ZP_05601845.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257428080|ref|ZP_05604478.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257430711|ref|ZP_05607093.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257433471|ref|ZP_05609829.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257436312|ref|ZP_05612359.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M876] gi|282903934|ref|ZP_06311822.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C160] gi|282905699|ref|ZP_06313554.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908667|ref|ZP_06316488.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910936|ref|ZP_06318739.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282914143|ref|ZP_06321930.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282919065|ref|ZP_06326800.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282924248|ref|ZP_06331922.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C101] gi|293501171|ref|ZP_06667022.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510132|ref|ZP_06668840.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M809] gi|293526723|ref|ZP_06671408.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|297591171|ref|ZP_06949809.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus MN8] gi|257271877|gb|EEV04015.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257274921|gb|EEV06408.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257278839|gb|EEV09458.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257281564|gb|EEV11701.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257284594|gb|EEV14714.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M876] gi|282313635|gb|EFB44028.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C101] gi|282316875|gb|EFB47249.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282322211|gb|EFB52535.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282325541|gb|EFB55850.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327485|gb|EFB57777.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330991|gb|EFB60505.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282595552|gb|EFC00516.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C160] gi|290920795|gb|EFD97858.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096176|gb|EFE26437.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467076|gb|EFF09594.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M809] gi|297576057|gb|EFH94773.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus MN8] gi|302332970|gb|ADL23163.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, ParE [Staphylococcus aureus subsp. aureus JKD6159] gi|312438246|gb|ADQ77317.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH60] Length = 665 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|73916426|gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + Y T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYVRKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|300023854|ref|YP_003756465.1| DNA topoisomerase IV subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299525675|gb|ADJ24144.1| DNA topoisomerase IV, B subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 669 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 384/686 (55%), Positives = 489/686 (71%), Gaps = 19/686 (2%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M IDLFS + S + +K E S Y I +LEGLEPVR Sbjct: 1 MGRSQIDLFSEFDSEMTEKSSRARKPAE------------SAGYSEHDIEVLEGLEPVRR 48 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIGGTDEKA+HHLF+EVIDN+MDE +AG+A IEV L +GFL V DNGRGIPV Sbjct: 49 RPGMYIGGTDEKAMHHLFAEVIDNSMDEAVAGHATWIEVELSADGFLAVTDNGRGIPVGP 108 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 +PK + STLE++LT LHAGGKFD+ Y SGGLHGVG+SVVNALS+ L V VAR ++ Sbjct: 109 YPKNKSLSTLEVVLTVLHAGGKFDSKAYNTSGGLHGVGVSVVNALSETLEVQVARDQQLY 168 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 FSRGIP + LEK + N+RGT++ FRPD KIFG A F +RLLKM+++KAYL Sbjct: 169 RMVFSRGIPQTKLEKLGSIMNRRGTKVRFRPDEKIFGKGAAFKPSRLLKMSRAKAYLFAG 228 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 V+ W C E+ K P + F+FPGGL YL ++ R+ ++ +IF+G+ EK G H G Sbjct: 229 VEIRWKCAPELI-KDDTPSEAVFHFPGGLADYLTESIDGRTRVTKDIFSGRIEKDGGH-G 286 Query: 301 TVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 +VEWA+AW +E+ SYCNT+ T EGGTHE+GLR AL +G++ Y ELT NK+A I S Sbjct: 287 SVEWAVAWISDEDGFSLSYCNTVPTAEGGTHENGLRQALYKGLRAYGELTGNKKAQQITS 346 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+M +A LSVFIREPEF GQTK KL +++A + VE A+RD FDH+L +P +ATKLL Sbjct: 347 EDVMSTAASTLSVFIREPEFQGQTKDKLATVEATKIVEAAVRDAFDHWLADSPQQATKLL 406 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 EW +++SEERL+RR+++EV R++A RKLRLPGKLADCS A GTE+FIVEGDSAGGSAK Sbjct: 407 EWTVDQSEERLKRRREKEVGRQSATRKLRLPGKLADCSIQQAAGTEIFIVEGDSAGGSAK 466 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 AR+R QA+LPLRGKILNVA+A S K+ NQ + DL+QALG T ++YR+EDLRYE+VI Sbjct: 467 SARDRETQAILPLRGKILNVANASSAKLSQNQLLADLIQALGAGTAAKYRDEDLRYERVI 526 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFYQEM +LIE HLFL PPL++I+ + YA +E H+ + Sbjct: 527 IMTDADVDGAHIASLLITFFYQEMPELIENGHLFLAVPPLYKISDKSDVAYARNEAHRDQ 586 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++E K+ K K ++RFKGLGEM LKET MD +RTLLRV I + + + + Sbjct: 587 LIETQFKNKKPK--VTRFKGLGEMDFKDLKETTMDKRRRTLLRVAIGEGERDM--LSEVV 642 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 N LMG+K + RF+FIQERA+F D+ Sbjct: 643 NSLMGSKPEARFRFIQERAAFAKDLD 668 >gi|253733399|ref|ZP_04867564.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|253728667|gb|EES97396.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TCH130] Length = 665 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEYYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|315222934|ref|ZP_07864813.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211] gi|315187884|gb|EFU21620.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211] Length = 649 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGDKIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 HKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219 VNALS L V + R TI+ Q+F G P + L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTIYKQRFENGGKPATTLKKIGTAAKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + ++ E +F++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVHLSLTDER-------TGESVDFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEEGG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGSDFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + + ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + +N LMG K R K+I++ F Sbjct: 591 LWETTMNPENRTLIRVTIDD----LARAERRVNVLMGDKVPPRRKWIEDNVKF 639 >gi|89070780|ref|ZP_01158033.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516] gi|89043622|gb|EAR49829.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516] Length = 652 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 335/652 (51%), Positives = 436/652 (66%), Gaps = 10/652 (1%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + D YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DN+MDE +AG+AN Sbjct: 7 KGTEPDTYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHLVAEVLDNSMDEAVAGHANR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV L + +T+ DNGRG+P E HPKFP KSTLE+IL TLHAGGKF Y+ SGGLHG Sbjct: 67 IEVELHDDHAITIRDNGRGMPFEEHPKFPGKSTLEVILCTLHAGGKFSGKAYQTSGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALSD + V VAR + Q+FSRG+PL P+ + N+RGT TF D +IF Sbjct: 127 VGASVVNALSDSMVVQVARDRKLVEQRFSRGVPLGPVAEVGAAPNRRGTTTTFHADEQIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL KM +SKAYL V+ W K + P + F+FPGGL YL Sbjct: 187 -GHHRFKPARLFKMVRSKAYLFSGVEIRW---KSAIDDGETPREATFHFPGGLSDYLVET 242 Query: 277 LENRSLISSEIFTG--KTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESG 333 L + S + + F G + + + G VEWAI W + I SYCNT+ T EGGTHE G Sbjct: 243 LGSASTYADKPFAGTVDFQSRFSTPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHEQG 302 Query: 334 LRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A+ +GI+ Y EL N++A I DDL+ ++S FIREPEF GQTK +L + +A Sbjct: 303 FWAAILKGIRAYGELVNNRKAKDITRDDLVTGGCALVSCFIREPEFVGQTKDRLATTEAA 362 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + VE A+RD FDH+L + A +L++++ R+EERLRRR+++E RK+A +KLRLPGKL Sbjct: 363 KLVEAAVRDHFDHWLTSDTKSAGAILDFLVLRAEERLRRRQEKETARKSATKKLRLPGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS + GTELFIVEGDSAGGSAK AR+R QA+LPLRGKILNV A + K+ +N +I Sbjct: 423 VDCSTSARDGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAAASKLGSNAEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 DL QALG +++ +DLRY+K+IIMTDADVDGAHIASLL+TFFY +M LI+ HL+ Sbjct: 483 NDLAQALGVGLGTKFSIDDLRYDKIIIMTDADVDGAHIASLLMTFFYTQMRPLIDHGHLY 542 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L PPL+R+TQG K +Y D+ K + + I++ RFKGLGEM A LK+T M Sbjct: 543 LACPPLYRLTQGAKRLYVADDREKDYWMGKGLGGKGK-IDVQRFKGLGEMDAKDLKDTTM 601 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L+RV ++ +T D + +LMG K + RF++I E A F++++ Sbjct: 602 NPETRKLIRVSLHD--EEPGETADLVERLMGKKPELRFQYISENARFVEELD 651 >gi|228909407|ref|ZP_04073232.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200] gi|228850184|gb|EEM95013.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200] Length = 654 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G IP + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|72160412|ref|YP_288069.1| DNA gyrase subunit B [Thermobifida fusca YX] gi|71914144|gb|AAZ54046.1| DNA gyrase subunit B [Thermobifida fusca YX] Length = 661 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 366/653 (56%), Gaps = 22/653 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA SI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA IEV+L Sbjct: 19 YDARSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGYATAIEVTLLA 78 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIPV+ HP K +E++LTTLHAGGKFD+ +Y +SGGLHGVG+SVVN Sbjct: 79 DGGVRVTDNGRGIPVDPHP-VEKKPAVELVLTTLHAGGKFDSKSYAVSGGLHGVGVSVVN 137 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V V R +++Q + P++ L ++E ++ GT+ITF PD IF F+ Sbjct: 138 ALSTRLEVEVRRDGYLWTQSYEMTKPVTELIRREPT-DETGTQITFWPDGSIFET-TTFN 195 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + Q A+L+ + ++ P + +Y+ GGL +++ + + Sbjct: 196 FETLSRRLQEMAFLNKGLSITIRDER-PEFVGDSPVTQTYYYEGGLSDFVRHLNATKEPV 254 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 S I + G VE A+ W + + ++ NTI T EGGTHE G R ALT + Sbjct: 255 HSSIIAFEEAGDGI---AVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRAALTSIV 311 Query: 343 KKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +YA + + ++ DD+ I+SV + +P+F GQTKTKL + +A+ V+ Sbjct: 312 NRYARDQKLLRDKDENLTGDDIREGLTAIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVC 371 Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + +L +NP EA ++ + R+ + RKT + LPGKLADC Sbjct: 372 HEYLRDWLDRNPGEAKDIVTKATQAARARIAARQARELTRRKTLLESTSLPGKLADCQST 431 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E++IVEGDSAGGSAK R+ QA+LP+RGKILNV A ++I N ++ ++ A Sbjct: 432 DPERCEVYIVEGDSAGGSAKGGRDPYYQAILPIRGKILNVEKARIDRILKNNEVQAIITA 491 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + LRY K+I+M DADVDG HI +LLLT ++ M LIE H++L PPL Sbjct: 492 LGTGIHDDFDITKLRYHKIILMADADVDGQHIRTLLLTLLFRFMKPLIEAGHVYLAQPPL 551 Query: 580 FRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETA 632 ++I +GT YA+ + + + + GK + RFKGLGEM S+L ET Sbjct: 552 YKIKWDPRGTDVDYAYSDRERDEKIAAGIAAGKKDPRPRDLVQRFKGLGEMNPSELWETT 611 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD +R LL+V ++ + + LMG + R FIQ A + + Sbjct: 612 MDPERRVLLQVTLDD----AAQADEMFSVLMGEDVESRRAFIQRNARDVRFLD 660 >gi|306825057|ref|ZP_07458399.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432493|gb|EFM35467.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 649 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 364/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVEDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E E+++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEYHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGA----TLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|150393905|ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH1] gi|295406298|ref|ZP_06816105.1| DNA topoisomerase IV [Staphylococcus aureus A8819] gi|297244527|ref|ZP_06928410.1| DNA topoisomerase IV [Staphylococcus aureus A8796] gi|54038819|sp|P66939|PARE_STAAN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|54041931|sp|P66938|PARE_STAAM RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|1777317|dbj|BAA11084.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] gi|149946357|gb|ABR52293.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus JH1] gi|294968886|gb|EFG44908.1| DNA topoisomerase IV [Staphylococcus aureus A8819] gi|297178557|gb|EFH37803.1| DNA topoisomerase IV [Staphylococcus aureus A8796] Length = 663 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R +I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|308175819|ref|YP_003915225.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117] gi|307743282|emb|CBT74254.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117] Length = 687 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 240/691 (34%), Positives = 363/691 (52%), Gaps = 28/691 (4%) Query: 17 QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 + ++ E + Y A I +LEGLE VR RPGMYIG T + LHH Sbjct: 2 STENASPQEPAESQAAAESMTSKVEHTYGAQDITVLEGLEAVRKRPGMYIGSTGPRGLHH 61 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 L EV+DN++DE +AGY + I V+L +G + DNGRGIPV+ HP K T+E+++T Sbjct: 62 LVYEVVDNSVDEALAGYCDTINVTLQADGGVRCEDNGRGIPVDVHP-TEGKPTVEVVMTI 120 Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196 LHAGGKF Y +SGGLHGVGISVVNALS++++ V RQ + F G + K Sbjct: 121 LHAGGKFGGGGYAVSGGLHGVGISVVNALSEKVNTIVRRQGHAWRIGFGNGGHTTQQLTK 180 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---- 252 + ++ GT TF PDP+IF FD L Q A+L+ ++ + ++ Sbjct: 181 GEETDRTGTSQTFYPDPEIFET-VEFDFETLRARFQQMAFLNKGLRITLTDERPQDNAEP 239 Query: 253 ---------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TV 302 + P ++ + GL Y++ + + E + + RG ++ Sbjct: 240 EAEVEEEIENQVVKPRTVDYLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDSKRGISL 299 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + +Y NTI T EGGTHE G R ALT + +YA + ++ ++ Sbjct: 300 EIAMQWTNAYAESVHTYANTINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTG 359 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D ++SV + EP+F GQTKTKL + A+ V+ + + + +NP A ++ Sbjct: 360 EDAREGLTAVISVKLSEPQFEGQTKTKLGNSMARGFVQGVVNEELGDWFERNPNVARDII 419 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 S+ R+ RK R+ R+ + + +PGKL+DCS E+FIVEGDSAGGSA Sbjct: 420 RKAQLASQARMAARKARDNARRKSPMESFGMPGKLSDCSSKNPAECEVFIVEGDSAGGSA 479 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 K+ R+ QA+LPLRGKILNV A ++ N ++ ++ A G ++ LRY K+ Sbjct: 480 KRGRDPHTQAILPLRGKILNVERARLDRALGNAEVQAMITAFGTGIGEEFDMAKLRYHKI 539 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHK 597 ++M DADVDG HI +LLLT ++ M LIE +++L +PPL+RI + Y ++ + Sbjct: 540 VLMADADVDGQHITTLLLTLIFRFMRPLIEHGYVYLAAPPLYRIKWSNAAHDYVFSDKER 599 Query: 598 QKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 L + K + I R+KGLGEM S+L +T MD +RTL +V ++ Sbjct: 600 DDALLAGQASNKRLPKDNGIQRYKGLGEMDYSELWDTTMDPERRTLRQVTMDD----AAA 655 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FIQ+ A + + Sbjct: 656 ADEVFSVLMGEDVESRRNFIQQNAKDVRFLD 686 >gi|16082085|ref|NP_394515.1| DNA gyrase subunit B [Thermoplasma acidophilum DSM 1728] gi|10640369|emb|CAC12183.1| probable DNA gyrase, subunit B (gyrB) [Thermoplasma acidophilum] Length = 641 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 262/659 (39%), Positives = 369/659 (55%), Gaps = 33/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 DNYD+S I+ILEGL+ VR PGMYIG TD + LHHL EV+DN++DE +AGY + I V Sbjct: 2 TEDNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGYCSRIYV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G +TV D+GRGIPV+ HPK+ N+ LEI+LT LH+G KFD Y+I+GGLHGVG+ Sbjct: 62 VMGSDGSITVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKITGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-----------KRGTRIT 208 VVNALS +L V R I+ F +GIP+S L+ V GT I Sbjct: 121 HVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPDHGTIIK 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF F +L +YL+ ++ + + E + + GG Sbjct: 181 FYPDPDIFETT-EFSYETILARLTDLSYLNPQLTITFLDEASGRE-------DVLHHEGG 232 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328 L ++ E + ++ ++ + ++ + + + S+ N I T EGG Sbjct: 233 LIELVRHLSEGKEVLMDPLYLKEEVDSHMVEFSLLYTT---DVQETLMSFVNNISTPEGG 289 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 TH +G L+R I+ YA + + DD+ + +L V ++ P+F GQTK+KL Sbjct: 290 THVAGFHQGLSRAIQDYARSNNKIKGVEDITGDDVKEGVIAVLHVKMQNPQFEGQTKSKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + V++ ++ NP A ++ V+ + R RK +E V RK+A+ Sbjct: 350 GNSSVRGIVQSVTSKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEG 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS N +EL+IVEGDSAGGSAKQARNR QAVLPLRGKILNV A K Sbjct: 410 GGLPGKLADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + N+ I DLV A+G + + LRY K+IIMTDADVDGAHI +LLLTFF++ L Sbjct: 470 VVENEIIHDLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE ++F PPL+RI +G Y + +E K+++ EF + I RFKGLGEM Sbjct: 530 IENGNVFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPNAI----IQRFKGLGEMNPE 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L++V I ++ + LMG K + R KFI+E A + +++ Sbjct: 586 QLWETTMNPKTRKLVQVTIED----AEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640 >gi|15924344|ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15926934|ref|NP_374467.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus N315] gi|148267843|ref|YP_001246786.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH9] gi|156979673|ref|YP_001441932.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253317051|ref|ZP_04840264.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006142|ref|ZP_05144743.2| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795590|ref|ZP_05644569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781] gi|258413400|ref|ZP_05681676.1| topoisomerase IV subunit B [Staphylococcus aureus A9763] gi|258420494|ref|ZP_05683436.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719] gi|258434734|ref|ZP_05688808.1| topoisomerase IV subunit B [Staphylococcus aureus A9299] gi|258444690|ref|ZP_05693019.1| topoisomerase IV subunit B [Staphylococcus aureus A8115] gi|258447475|ref|ZP_05695619.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300] gi|258454696|ref|ZP_05702660.1| topoisomerase IV subunit B [Staphylococcus aureus A5937] gi|269202977|ref|YP_003282246.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED98] gi|282892845|ref|ZP_06301080.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117] gi|282928913|ref|ZP_06336502.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102] gi|296275475|ref|ZP_06857982.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MR1] gi|13701151|dbj|BAB42446.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus N315] gi|14247125|dbj|BAB57516.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|147740912|gb|ABQ49210.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH9] gi|156721808|dbj|BAF78225.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|257789562|gb|EEV27902.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781] gi|257839964|gb|EEV64432.1| topoisomerase IV subunit B [Staphylococcus aureus A9763] gi|257843442|gb|EEV67849.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719] gi|257849095|gb|EEV73077.1| topoisomerase IV subunit B [Staphylococcus aureus A9299] gi|257850183|gb|EEV74136.1| topoisomerase IV subunit B [Staphylococcus aureus A8115] gi|257853666|gb|EEV76625.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300] gi|257863079|gb|EEV85843.1| topoisomerase IV subunit B [Staphylococcus aureus A5937] gi|262075267|gb|ACY11240.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED98] gi|282589422|gb|EFB94512.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102] gi|282764842|gb|EFC04967.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117] gi|315131157|gb|EFT87141.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS03] gi|329727072|gb|EGG63528.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21172] Length = 665 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R +I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|229104127|ref|ZP_04234801.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28] gi|228679334|gb|EEL33537.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28] Length = 654 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G +P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DIFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFTGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ ++ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A+QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGK----GYMLQRYKGLGEMNANQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|270290230|ref|ZP_06196455.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4] gi|270281011|gb|EFA26844.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4] Length = 677 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 368/651 (56%), Gaps = 33/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY I V++ Sbjct: 4 TYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVTIR 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVD+GRG+PV H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 64 SDNSITVVDHGRGMPVGMHK--SGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 121 Query: 163 NALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS++L V + R + + F + G P+ L+K K + GT +TF+PDP IF Sbjct: 122 NALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTTV- 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + A+L VK + ++ E + EE+ + G+K +++ E++ Sbjct: 181 FNFNTLAVRLRESAFLLKGVKITLTDERAGHE-----QAEEYLYEEGIKEFVEYLNEDKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + + K G VE A + + + S+ N + T +GGTHE G+R T+ Sbjct: 236 TLGNIM-YFDGSKHGI---EVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 ++A ++ ++ D+ ++S+ + E EF GQTK KL + +A+ V Sbjct: 292 AFNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 E + + +L++N A +L+ I + R+ RK R+ +R RK + GKL Sbjct: 352 EAVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ RNR QA+LPLRGK+LN A + I N++I Sbjct: 412 TPAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G +++ ED Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I+ ++ Sbjct: 472 NTIIYTIGAGVGPEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 531 Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++ +G TK YA +E +++ ++ + + RFKGLGEM A QL Sbjct: 532 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGR----GFSLQRFKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV I+ D + + LMG K + R K+I+ SF Sbjct: 588 ETTMNPDTRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVSF 634 >gi|258449316|ref|ZP_05697419.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224] gi|257857304|gb|EEV80202.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224] Length = 665 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R +I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLRERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|258424795|ref|ZP_05687669.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635] gi|282916615|ref|ZP_06324373.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283770421|ref|ZP_06343313.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus H19] gi|257844959|gb|EEV68999.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635] gi|282319102|gb|EFB49454.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283460568|gb|EFC07658.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus H19] Length = 665 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|83942882|ref|ZP_00955342.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36] gi|83845890|gb|EAP83767.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36] Length = 653 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 344/654 (52%), Positives = 448/654 (68%), Gaps = 10/654 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 QS + YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A Sbjct: 6 SGAQSNAKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE+ L NG +TV DNGRGIP + HPK P+KS LEII TL+AGGKF +YE SGGL Sbjct: 66 TWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALSD L V VAR +F+ +FSRGIP LEK N+RGT +TF PD + Sbjct: 126 HGVGSSVVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRRGTAVTFHPDAE 185 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG ARL M +SKAYL V+ W C + P++ F+FPGGL YL Sbjct: 186 IFGP-LKLKPARLFAMARSKAYLFSGVEIRWKC---GQQDGDTPQEATFHFPGGLSDYLN 241 Query: 275 TKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 L+ + + F G + +K G VEWAI W + I SYCNTI T EGGTHE Sbjct: 242 ETLKGSTTYAEHPFGGTVDFREKFNAPGKVEWAINWTPSRDGFIQSYCNTIPTPEGGTHE 301 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G A+ +G+K Y EL NK+A +I DDL+ ++S FIREPEF GQTK +L ++D Sbjct: 302 AGFWSAILKGVKAYGELVGNKKAGTITRDDLITGGCALVSCFIREPEFVGQTKDRLATVD 361 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 AQR VENA+RD FD++L + A +L++++ R+EERLRRR+++E RKTA +KLRLPG Sbjct: 362 AQRMVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERLRRRQEKETARKTATKKLRLPG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC+ GTELFIVEGDSAGGS K ARNR+ QA+LPL+GKILNV A S K+ N Sbjct: 422 KLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKLNTNA 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I DL +ALG +++ +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M +I+ H Sbjct: 482 EINDLCEALGVGMGTKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGH 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+TQG K VY D+ K LE+ GKGKI++ RFKGLGEM A LKET Sbjct: 542 LYLACPPLYRLTQGAKRVYVADDAEKDMWLEK-GLGGKGKIDLQRFKGLGEMDAKDLKET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R L+RV +++D+ +T D + +LMG K + R+++IQE A F++++ Sbjct: 601 TMDPTTRKLIRVTVDEDM--PGETGDLVERLMGKKPELRYQYIQENAQFVEELD 652 >gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205] gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205] Length = 656 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 254/654 (38%), Positives = 383/654 (58%), Gaps = 29/654 (4%) Query: 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108 I++LEGLE VR RP MYIG EK LHHL +E +DN++DE +AGY IEV+++ + +T Sbjct: 16 IQVLEGLEAVRKRPAMYIGDISEKGLHHLVNETVDNSIDEAMAGYCTDIEVTINEDNSIT 75 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168 V DNGRGIPV+ H K S LE+++T LHAGGKFD +Y++SGGLHGVG+S VNALS Sbjct: 76 VEDNGRGIPVDMHEKLHK-SALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTH 134 Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLL 228 + V R I+ Q++ +G PL P++ + RGTR F PDP IF + + Sbjct: 135 MLSQVFRGGKIYQQEYEKGKPLYPVKVVGETNK-RGTRQQFWPDPTIFTHTV-YKWDIIA 192 Query: 229 KMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288 + A+L+ +K + ++ G +++ F+ GLK +++ +R+ + ++ Sbjct: 193 NRMRELAFLNAGIKITLRDLR--PDEEGKTKEQVFHAKDGLKEFVRYVDRHRTHLFDDVI 250 Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 KTEK+G +E A+ + + I SY N I T EGGTH +G R+ALTR +K YAE Sbjct: 251 YLKTEKQGIP---IEIAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMALTRTLKAYAE 307 Query: 348 ------LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 K + I +D ++S+ + EP+F GQTKTKL + + Q V+ A+ Sbjct: 308 ADPTISKQIEKAKVEIAPEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVQGAVQQAVN 367 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460 + YL ++P EA ++ E V+ + R+ RK RE ++ + LPGKLADCS Sbjct: 368 EALSDYLEEHPDEAKRICEKVVLAATARIAARKARESVQRKNFMTGGGLPGKLADCSMKD 427 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E+F+VEGDSAGGSAKQ R+R QA+LPLRGKILNV K+ + +M+++Q++ Sbjct: 428 PKECEIFLVEGDSAGGSAKQGRDRFRQAILPLRGKILNVEKVQWHKVFEAESVMNIIQSI 487 Query: 521 GCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 G R + + LRY+K+IIMTDADVDG+HI +L++T FY+ M +IE+ HL++ Sbjct: 488 GVRFGVDGEDSKEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYI 547 Query: 575 ISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKH-GKGKIEISRFKGLGEMLASQLKETA 632 +PPL++ T + S Y + E+ +Q ++++ I R+KGLGEM QL ET Sbjct: 548 ATPPLYKCTYRSKVSEYCYTEQQRQAFIDKYGDGVEDKNIHTQRYKGLGEMNPEQLWETT 607 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 MD + R L +V I + + + LMG + R +FI++ A++ ++ Sbjct: 608 MDPSTRLLKQVTIE----NAAQADEIFSMLMGDDVEPRREFIEQNATYA-NIDA 656 >gi|319947116|ref|ZP_08021350.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis ATCC 700641] gi|319747164|gb|EFV99423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis ATCC 700641] Length = 649 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHLVWEIVDNAVDEALSGFGSQIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVADQGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKIGSAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ + F++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDN-----HVAFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ E +G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPV-LYFNGESEG---FQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 477 EINTMIYTIGAGVGADFTIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + LE+ ++ + R+KGLGEM A Q Sbjct: 537 VYIAMPPLYKMSKGKGKKEEVAYAWTDSE----LEDLRRTFGRGATLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|295394842|ref|ZP_06805055.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] gi|294972175|gb|EFG48037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] Length = 664 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 249/662 (37%), Positives = 366/662 (55%), Gaps = 27/662 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA I +LEGLE VR RPGMYIG T E+ LHHL E++DNA+DE +AG+ + I V++ Sbjct: 9 YDADDITVLEGLEAVRKRPGMYIGSTSERGLHHLVYEIVDNAVDEALAGFNDRIHVTILA 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D GRGIPV H TL+++LT LHAGGKF Y +SGGLHGVG SVVN Sbjct: 69 DGGVRVEDRGRGIPVAIHS-TEKVPTLQVVLTILHAGGKFGGGGYAVSGGLHGVGSSVVN 127 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + V R ++ Q + RG+P + K + + GT ITF PD +IF F+ Sbjct: 128 ALSKRMDAEVHRDGFVWRQSYERGVPTGEVTK-GEAADHTGTIITFWPDEEIFDT-VQFN 185 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK-----------EIAEKYGIPEKEEFYFPGGLKTY 272 L Q A+L+ + ++ E E+ P + F + GL Y Sbjct: 186 FETLRARFQQMAFLNKGLSITLRDERAEQVNDDDVQLEEQEEEFKPREVTFKYDNGLFDY 245 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 ++ + E + T +E A+ W + +Y NTI T EGGTH Sbjct: 246 VKYLNSTKKSEPVHEDIISFEAEDTEETIALEVAMQWTSSYAESVHTYANTINTHEGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R+ALT I YA + ++ ++ DD+ ++S+ + EP+F GQTKTKL Sbjct: 306 EEGFRIALTNLINAYAREQKLLKEKDTNLTGDDVREGLTAVISIKLGEPQFEGQTKTKLG 365 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKL 447 + +A+ V+ +RD H+L NP++A +++ I+ S+ R+ RK RE R+ + + Sbjct: 366 NSEARGFVQRVVRDHLGHWLESNPMQAKEVVRKAIQASQARMAARKAREATRRKSLLESS 425 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC +E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 426 GLPGKLKDCQSKDPSISEVFIVEGDSAGGSAVQGRDPLTQAILPLRGKILNVEKARLDRA 485 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +N ++ ++ A G ++ E LRY K+++M DADVDG HI +LLLT ++ M LI Sbjct: 486 LSNLEVQSMITAFGTGIGDEFDIEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPLI 545 Query: 568 EQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 E+ H++L +PPL+RI +A+ + + +L + + +GK + I R+KGLGEM Sbjct: 546 ERGHVYLATPPLYRIKWSNAADEFAYTDRERDALLTDGRANGKRLPKELGIQRYKGLGEM 605 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 +L ET M+ + R L +V ++ + + + LMG D R +FIQE A + Sbjct: 606 NYHELWETTMNPDHRLLKQVTLDDAMV----ADEIFSVLMGDDVDSRKRFIQENAKDVRF 661 Query: 684 VG 685 + Sbjct: 662 LD 663 >gi|32448562|gb|AAO16798.1| ParE [Streptococcus pneumoniae] Length = 638 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 36/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V+++ Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 61 KDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 N S L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFST-T 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + A+L V + + E EF++ G++ ++ E++ Sbjct: 178 DFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNEDK 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+T Sbjct: 231 ETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 286 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 287 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L GK Sbjct: 347 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 406 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N++ Sbjct: 407 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 466 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 467 INTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 526 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A QL Sbjct: 527 YIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQL 582 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 583 WETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 630 >gi|82750947|ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphylococcus aureus RF122] gi|82656478|emb|CAI80900.1| topoisomerase IV subunit B [Staphylococcus aureus RF122] Length = 665 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF S Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQSGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVGYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++S+ I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSIRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ +L S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDELRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|304384956|ref|ZP_07367302.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici DSM 20284] gi|304329150|gb|EFL96370.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici DSM 20284] Length = 681 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 368/651 (56%), Gaps = 33/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY I V++ Sbjct: 8 TYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEINVTIR 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TVVD+GRG+PV H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 SDNSITVVDHGRGMPVGMHK--SGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS++L V + R + + F + G P+ L+K K + GT +TF+PDP IF Sbjct: 126 NALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + A+L VK + ++ E + EE+ + G+K +++ E++ Sbjct: 185 FNFNTLAVRLRESAFLLKGVKITLTDERAGHE-----QAEEYLYEEGIKEFVEYLNEDKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + + K G VE A + + + S+ N + T +GGTHE G+R T+ Sbjct: 240 TLGNIM-YFDGSKHGI---EVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 ++A ++ ++ D+ ++S+ + E EF GQTK KL + +A+ V Sbjct: 296 AFNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 E + + +L++N A +L+ I + R+ RK R+ +R RK + GKL Sbjct: 356 EAVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ RNR QA+LPLRGK+LN A + I N++I Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEI 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G +++ ED Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I+ ++ Sbjct: 476 NTIIYTIGAGVGPEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535 Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++ +G TK YA +E +++ ++ + + RFKGLGEM A QL Sbjct: 536 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGR----GFSLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV I+ D + + LMG K + R K+I+ SF Sbjct: 592 ETTMNPDTRTLVRVRIDDDT----LAERRVTTLMGDKVEPRRKWIESNVSF 638 >gi|90961848|ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius UCC118] gi|90821042|gb|ABD99681.1| Topoisomerase IV subunit B [Lactobacillus salivarius UCC118] Length = 673 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 363/654 (55%), Gaps = 33/654 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +NY+ SI++L+GLE VR RPGMYIG TD + LHHL E+ DNA+DE ++GY I V Sbjct: 2 PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYGKEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + +TVVDNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS +L V R + + F + G P+ L K K + K GT++TF+PD IF Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L + + A+L VK + ++ +EEF + G+K +++ E Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ ++ + + +K G VE A + + I S+ N + T +GGTHE+G++ A Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + ++ D+ ++SV I E +F GQTK KL + +A+ Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 + V++ + + ++L++N A +L+ I+ E R RK R+ +R R+ L Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ D Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I Sbjct: 470 EEINTMIYTIGAGVGAEFNINDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529 Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL++I + YA + + +E KK + R+KGLGEM A Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLGEMNAD 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ D + + LMG K + R K+I++ F Sbjct: 586 QLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635 >gi|229061161|ref|ZP_04198511.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603] gi|228718032|gb|EEL69672.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603] Length = 653 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 6 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R +I+ Q+F G P + LEK K + GT + F+PD IF Sbjct: 124 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 182 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 235 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 290 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 291 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 351 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 411 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 471 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 530 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 531 IALPPLYKVSKGKGKSEVIEYAWSDEELGSVTKKVGK----GYMLQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 587 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 633 >gi|73916468|gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E E ++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIELHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|152975974|ref|YP_001375491.1| DNA topoisomerase IV subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024726|gb|ABS22496.1| DNA topoisomerase IV, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 654 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 361/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVIIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTILHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G IP++ LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTKE-SGTTMHFKPDSSIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 AIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ ++SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLAAVVSVRVPEELLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L + P AT L++ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEETPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFSIEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKSLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGK----GYILQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|331703026|ref|YP_004399713.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801581|emb|CBW53734.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 634 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + V DNGRGIPV + KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S Sbjct: 62 ITKENEVIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS+G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSKGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEIIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ AL Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ +K RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 ITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|262282828|ref|ZP_06060595.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA] gi|262261080|gb|EEY79779.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA] Length = 647 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 369/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVSDHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF P+ IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPNDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + ++ EK EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDER-------TGEKVEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|304373045|ref|YP_003856254.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1] gi|304309236|gb|ADM21716.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1] gi|330723339|gb|AEC45709.1| DNA gyrase subunit B [Mycoplasma hyorhinis MCLD] Length = 640 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 254/653 (38%), Positives = 364/653 (55%), Gaps = 22/653 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NY+A SI+ LEGLEPVR RPGMYIGGT LHHL E++DNA+DE +AG+AN I V Sbjct: 2 SNQNYEAESIQTLEGLEPVRKRPGMYIGGTGILPLHHLIWEIVDNAVDEALAGFANTITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G++ V DNGRGIPV HPK N S E++LT LHAGGKFD S+Y++SGGLHGVG Sbjct: 62 EITTDGYVKVSDNGRGIPVGIHPKH-NVSAAEVVLTVLHAGGKFDGSSYKVSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFG 217 SVVNALS L V + R ++ Q+F G K GT I F+PD I Sbjct: 121 SVVNALSANLKVWIKRDGKLYFQEFVDGGKKIDDLKVIDTVPDFSTGTTIMFKPDFTIME 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F +L + AYL+ +K + EK F F GG+ Y+ Sbjct: 181 VN-DFRLDIILDRLKQTAYLTKNLKFIVKDQRNNFEKE-------FLFAGGIIDYVSELT 232 Query: 278 ENRSLISSEIFTGKTE-KKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335 + + I + E + E A+ + E+ E+ +Y N I EGGTHE+GL Sbjct: 233 KGSEKVHDNIIYSEGEISTDQYHTKAEIALQYVKEDRSEVLAYTNNIYNREGGTHETGLF 292 Query: 336 VALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 AL+R + YA + + +D+ ++S+ P F GQTK KL + + + Sbjct: 293 DALSRILNNYALENKFFKSDQEKFSREDIKDGMYVVVSIKHSNPIFEGQTKGKLNNKEVR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V + F+ +L +NP +A K++E + + R RE + RK+ LPGK Sbjct: 353 SVVNKIFSEVFERFLAENPDQARKIIERNLLSQKARKAAESAREAIKRKSPFEINSLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ A +EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ N++ Sbjct: 413 LADCTTKDAQISELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQKTNFEKVLKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I+ L+ A G +++ +RY K+IIMTDAD DG+HI +LLLTF Y+ LIE + Sbjct: 473 ILSLITAFGTGIGAEFNINKIRYYKIIIMTDADSDGSHIRTLLLTFLYRFFKPLIEYGFV 532 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL++I+ K VYA+ ++ K++I+E+ + K+ I R+KGLGEM QL ET Sbjct: 533 YIAQPPLYKISANKKVVYAYSDKQKEQIIEQ--EFSNQKVSIQRYKGLGEMNPDQLWETT 590 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +++V+I + +LMGT R FI+E A + ++ Sbjct: 591 MDPKTRKMIQVQIQDAI----IASQVFEELMGTDVAPRKLFIEENAKYAKNLD 639 >gi|163941204|ref|YP_001646088.1| DNA topoisomerase IV subunit B [Bacillus weihenstephanensis KBAB4] gi|163863401|gb|ABY44460.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4] Length = 654 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R +I+ Q+F G P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|300214581|gb|ADJ78997.1| Topoisomerase IV subunit B [Lactobacillus salivarius CECT 5713] Length = 673 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 364/654 (55%), Gaps = 33/654 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +NY+ SI++L+GLE VR RPGMYIG TD + LHHL E+ DNA+DE ++GY I V Sbjct: 2 PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYGKEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + +TVVDNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS +L V R + + F + G P+ L K K + K GT++TF+PD IF Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L + + A+L VK + ++ +EEF + G+K +++ E Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ ++ + + +K G VE A + + I S+ N + T +GGTHE+G++ A Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + ++ D+ ++SV I E +F GQTK KL + +A+ Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 + V++ + + ++L++N A +L+ I+ E R RK R+ +R R+ L Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I Sbjct: 470 EEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529 Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL++I + YA + + +E KK + R+KGLGEM A Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLGEMNAD 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ D + + LMG K + R K+I++ F Sbjct: 586 QLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635 >gi|284010223|dbj|BAI66711.1| DNA gyrase B [Borrelia sp. BF16] Length = 625 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 238/639 (37%), Positives = 359/639 (56%), Gaps = 19/639 (2%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 +L+GLE VR RPGMYIG LHHL E+IDN++DE +AG+ + IEV ++ + +TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVSINGLHHLVYELIDNSIDEALAGFCDKIEVVINSDSSITVS 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVVNALS L Sbjct: 61 DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V V R +F Q FSRGIP S +E + + RGTR+ F D +IF + L + Sbjct: 120 VFVYRDEKVFRQTFSRGIPTSEVEVVGESSS-RGTRVIFLADSEIFETL-EYSFEILSRR 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN-RSLISSEIFT 289 + A+L+ +++ + +++ FY+ GG+++++ N RS+ S F Sbjct: 178 LRELAFLNDKLQISIEDRRLGEKRFLE-----FYYEGGIRSFVDYLTNNSRSIQSDPYFV 232 Query: 290 GKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + ++W + + I S+ N I T +GGTH +G R L + + + Sbjct: 233 EGVSNEVIVNIGLKWTEGY---SENILSFVNNIKTQDGGTHVTGFRSGLFKAMNEAFNRL 289 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + K ++ DD ++S+ I EP+F GQTK KL + ++ VE D Sbjct: 290 KISKKDVPTLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETITHDRLLKV 349 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 + NP+E + + I+ + R RK R +K+ L LPGKLADCS E+ Sbjct: 350 IANNPLEVEIIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCSSKNPIEREI 409 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 +IVEGDSAGGSAK R+R QA+LPL GK+LNV +++ N +++ ++ +LG Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTKEDRVITNDKLIPIIASLGAGVGK 469 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 + E LRY KVIIM DADVDG+HI +LLLTFF++ M DLIE H+++ PPL+++ Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN 529 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 K Y +D+ K+ LE + ++ + R+KGLGEM +QL ET M+ + R + V I+ Sbjct: 530 KVHYFYDDIEKESFLESIGSEKRDRVNLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGID 589 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R +FI++ A + ++ Sbjct: 590 DSM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624 >gi|229134401|ref|ZP_04263214.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196] gi|229168314|ref|ZP_04296039.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621] gi|228615140|gb|EEK72240.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621] gi|228649022|gb|EEL05044.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196] Length = 654 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R +I+ Q+F G P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|322385164|ref|ZP_08058811.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus ATCC 51100] gi|321270788|gb|EFX53701.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus ATCC 51100] Length = 649 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + ++ E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLRNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|301320449|gb|ADK69092.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 634 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 380/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + V DNGRGIPV + KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S Sbjct: 62 ITKENEIIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ AL Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ +K RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 ITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|284010225|dbj|BAI66712.1| DNA gyrase B [Borrelia turcica] Length = 625 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 244/639 (38%), Positives = 358/639 (56%), Gaps = 19/639 (2%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 +L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IE+ ++ + +TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEIVINSDNSITVS 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVVNALS L Sbjct: 61 DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V V R +F Q FSRGIP S +E + + RGT++TF D +IF + L K Sbjct: 120 VFVRRDGKVFRQTFSRGIPTSEVEVVGESCS-RGTKVTFLADYEIFETLN-YSFETLSKR 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L+ +++ + EK+ FYF GG+K ++ N I SE + Sbjct: 178 LKELAFLNDKIRISIEDRRLGEEKFKE-----FYFEGGIKAFVDYLTNNSRNIQSEPYFI 232 Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + V+ + W E I S+ N I T EGGTH +G R L + + + ++T Sbjct: 233 EGSFDEVI---VDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKMT 289 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + K + DD ++S+ + EP+F GQTK KL + ++ VE + D Sbjct: 290 KISKKDVPILTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETVVHDGLLSI 349 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 + NP+E + + I + R RK R +K+ L LPGKLADCS E+ Sbjct: 350 INDNPLEIEVIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREI 409 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 +IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ +LG Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 + E LRY KVIIM DADVDG+HI +LLLTFF++ M L+E KH+++ PPL++I Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKIKSEN 529 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 + Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R + + I+ Sbjct: 530 RVHYFYDDLEKESFLGSIESDKRDKINLQRYKGLGEMNPTQLWETTMNPATRKMKLIGID 589 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FI++ A + ++ Sbjct: 590 DAM----QADRIFVTLMGDDVEPRREFIEQNALDVVNLD 624 >gi|42560566|ref|NP_975017.1| DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492062|emb|CAE76659.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 634 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 379/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + V DNGRGIPV + KS L ++ T LHAGGKFD+ +Y+ISGGLHGVG S Sbjct: 62 ITKENEIIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ L Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQVLI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ +K RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 ITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|59798277|sp|Q6GH51|PARE_STAAR RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B Length = 663 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHFEF 636 >gi|171779306|ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281923|gb|EDT47354.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 649 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 370/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ I+V L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGTQIDVIL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NQDGSVTVKDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD IF Sbjct: 127 VNALSRWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTMVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ E EF++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERLKESAFLLKNVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ E +G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPVIWV-TGEDQG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA + ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + ++ E+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K ++ R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I+ L + ++ LMG K + R K+I++ F Sbjct: 593 LWETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKVEPRRKWIEDNVKF 641 >gi|169828512|ref|YP_001698670.1| DNA topoisomerase IV subunit B [Lysinibacillus sphaericus C3-41] gi|168993000|gb|ACA40540.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41] Length = 667 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 242/658 (36%), Positives = 355/658 (53%), Gaps = 35/658 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N+ + Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ + Sbjct: 11 TNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGS 70 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V + + ++V D GRG+P H K T EII T LHAGGKF Y+ SGGLH Sbjct: 71 HIIVKIHKDQSISVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGLH 128 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPK 214 GVG SVVNALS L VT+ R + Q+F G P++ LE+ + + GT + F PD Sbjct: 129 GVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGHTK-QTGTLVHFLPDET 187 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F+ L + + A+L +K ++E + + F++ G++ ++ Sbjct: 188 IFSVT-KFNYDTLAERLRESAFLLKGLKIELIDERE------EGKNDVFFYENGIEAFVA 240 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E + ++ + + VE+A + + I S+ N + T +GGTHE+G Sbjct: 241 YLNEEKDVLHPVKYVEGIQDD----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETG 296 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389 + ALTR +YA + ++ D+ I+SV I E +F GQTK KL + Sbjct: 297 AKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGT 356 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446 +A+ V++ + + + L +N + L+ I + R RK RE R K Sbjct: 357 SEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGS 416 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL A EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N A + Sbjct: 417 TILSGKLTPAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQD 476 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ A+G + + ED Y KV+IMTDAD DGAHI LLLTFFY+ M L Sbjct: 477 IMKNEEISTIIHAIGAGVGTDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPL 536 Query: 567 IEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 IE +F+ PPL+++++G K V YA E QK +++ K + R+KGLGE Sbjct: 537 IEAGKVFIALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGK----GYILQRYKGLGE 592 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL +T M+ + RTL+RV I + + LMG K + R K+I+ F Sbjct: 593 MNADQLWDTTMNPDTRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 646 >gi|49483547|ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|49241676|emb|CAG40364.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MRSA252] Length = 665 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHFEF 638 >gi|315613333|ref|ZP_07888242.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis ATCC 49296] gi|315314568|gb|EFU62611.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis ATCC 49296] Length = 649 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGERIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLEKVGTAAKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 IDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 IVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|73916414|gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916448|gb|AAZ93092.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916454|gb|AAZ93095.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916456|gb|AAZ93096.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916458|gb|AAZ93097.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916464|gb|AAZ93100.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEG+SAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGNSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|320546627|ref|ZP_08040939.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus ATCC 9812] gi|320448682|gb|EFW89413.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus ATCC 9812] Length = 649 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 371/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVIL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NQDGSVTVKDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTTVTFMPDDKIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ E EF++ G++ +++ E+ Sbjct: 186 TDFKFNTIAERLKESAFLLKDVTLTLTDER-----PEEAEHLEFHYVNGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ E +G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPVIWV-TGEDQG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA + ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + ++ E+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGGGVGADFKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K ++ R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641 >gi|284010229|dbj|BAI66714.1| DNA gyrase B [Borrelia sp. Tortoise14H1] Length = 625 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 241/639 (37%), Positives = 357/639 (55%), Gaps = 19/639 (2%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 +L+GLE VR RPGMYIG LHHL EV+DN++DE +AG+ + IEV ++ + +TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSITVS 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVVNALS L Sbjct: 61 DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V V R +F Q FSRG+P S +E + RGT++TF D ++F + L K Sbjct: 120 VFVRRDGKVFRQTFSRGVPTSEVEVVGE-SFSRGTKVTFLADYEVFETLN-YSFEILSKR 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L+ +++ + EK+ FYF GG+K ++ N I SE + Sbjct: 178 LKELAFLNDKIRISIEDRRIGEEKFKE-----FYFEGGIKAFVDYLTNNSRNIQSEPYFI 232 Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + V+ + W E I S+ N I T EGGTH +G R L + + + + T Sbjct: 233 EGSFDEVI---VDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKGT 289 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + K ++ DD ++S+ + EP+F GQTK KL + ++ VE + D Sbjct: 290 KISKKDVPTLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRI 349 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 + N +E + + I + R RK R +K+ L LPGKLADCS E+ Sbjct: 350 INDNSLEIEIIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREI 409 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 +IVEGDSAGGSAK R+R QA+LPL GK+LNV +K+ N +++ ++ +LG Sbjct: 410 YIVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 + E LRY KVIIM DADVDG+HI +LLLTFF++ M L+E KH+++ PPL+++ Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKVKSEN 529 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 + Y +D+ K+ L + + KI + R+KGLGEM +QL ET M+ R + + I+ Sbjct: 530 RVHYFYDDLEKESFLGSIESEKRDKINLQRYKGLGEMNPTQLWETTMNPATRKMKLIGID 589 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R +FI++ A + ++ Sbjct: 590 DAM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624 >gi|229012772|ref|ZP_04169941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048] gi|228748453|gb|EEL98309.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048] Length = 654 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 241/651 (37%), Positives = 360/651 (55%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + Sbjct: 7 QYNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V+D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KDNSISVIDKGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R +I+ Q+F G P + LEK K + GT + F+PD IF Sbjct: 125 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTKE-SGTTMHFKPDTTIFSTTN- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ E + F++ G++ ++ E + Sbjct: 183 YNYETLCERLRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I + E+ G E A + + I S+ N + T +GGTHE+G + A+TR Sbjct: 236 SIHPVV-YFSGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV + E +F GQTK KL + +A+ ++ Sbjct: 292 VFNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSI 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKL 453 + + + ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 352 DAIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 412 TPAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 472 NTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 574 LISPPLFRITQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA +E + ++ K + R+KGLGEM A QL Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGK----GYMLQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I+ F Sbjct: 588 ETTMNPETRTLIRVKIDDASR----AERRVTTLMGDKVEPRRKWIERNVQF 634 >gi|303233456|ref|ZP_07320124.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4] gi|302480464|gb|EFL43556.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4] Length = 648 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 254/660 (38%), Positives = 371/660 (56%), Gaps = 26/660 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + S++Y + I++LEGL+PVR RPGMYIG T LHHL E++DN++DE +AG+ I Sbjct: 2 TTPSNSYTGNEIKVLEGLDPVRKRPGMYIGTTSAAGLHHLVWEIVDNSVDEAMAGFCTSI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV++ + ++V DNGRGIPVE HP+ TLE++LT LHAGGKFDN+ Y++SGGLHGV Sbjct: 62 EVTVHPDNSISVKDNGRGIPVEIHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L TV R IF +F RG +++ GT ITF PD IF Sbjct: 121 GVSVVNALSKRLIATVERDGGIFQMEFERGKVTKKMQQIGTSSK-TGTTITFWPDDLIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ L Q A+L+ + + ++E P EE+ + GG+ +++ Sbjct: 180 TTV-YNFETLQNRLQETAFLNKNLHIRITDEREE-----TPRVEEYCYSGGIIDFVKFLN 233 Query: 278 ENRSLIS--SEIFTGKTEKKG----THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330 E ++ + + + + T +G VE AI W E S+ N I TDEGG H Sbjct: 234 EEKTPLPGLTTPIYIEGQSDESAPLTQKGEVEVAIQWNTSYSEYVMSFANDIYTDEGGMH 293 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALT+ + YA ++ ++ DD+ ++SV + +P+F GQTK KL Sbjct: 294 LEGFRTALTKTVNDYARGHNLLKEKDSNLTGDDIREGLCAVISVKLPDPQFEGQTKAKLG 353 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKL 447 S + + Y ++P +A ++ + + ++ RL +K R+V R+ + Sbjct: 354 SSYMRSLTNKIVAAGLTEYFEEHPNQAKEIFKKAAQAAKGRLAAQKARQVARRKGLLESA 413 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS A TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV ++ Sbjct: 414 SLPGKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRA 473 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +++ I L+ A+G +++ E RY K++IMTDADVDGAHI LLLTFFY+ M L+ Sbjct: 474 LSSETITSLITAIGTGVGNEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLV 533 Query: 568 EQKHLFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + +++ PPL++I K + +E +E + K + R+KGLGEM Sbjct: 534 DAGFIYVAQPPLYQIKAKGKKYGKYLYTDEEL--AIEAREYDDPSKYTVQRYKGLGEMDP 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL T M+ R +LRV I +D + ++ LMG++ ++R FIQ A + + Sbjct: 592 EQLWSTTMEPKNRIMLRVTIED----ARDAERAVANLMGSQVEKRKDFIQTHAKDVRFLD 647 >gi|256384292|gb|ACU78862.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385125|gb|ACU79694.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455935|gb|ADH22170.1| DNA gyrase, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 634 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 257/649 (39%), Positives = 380/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + V DNGRGIPV + KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S Sbjct: 62 ITKENEVIVQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEIIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ AL Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ +K RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSSIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 ITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDSQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|217976614|ref|YP_002360761.1| DNA topoisomerase IV subunit B [Methylocella silvestris BL2] gi|217501990|gb|ACK49399.1| DNA topoisomerase IV, B subunit [Methylocella silvestris BL2] Length = 698 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 384/671 (57%), Positives = 483/671 (71%), Gaps = 7/671 (1%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 ++ S+ K PA Y A+SI +LEGLEPVR RPGMYIGGTDE AL Sbjct: 25 SARSSAAKGADIKSAAQEPARLGTPGEAGYTAASIEVLEGLEPVRRRPGMYIGGTDEAAL 84 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134 HHLF+EV+DNAMDE +AG+A+ I+VS D GFL+V DNGRGIPV+ HPKFP KS LE+I+ Sbjct: 85 HHLFAEVLDNAMDEAVAGHASFIDVSYDAAGFLSVTDNGRGIPVDPHPKFPKKSALEVIM 144 Query: 135 TTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 TTLHAGGKFD+ Y+ SGGLHGVG+SVVNALS+ L V VAR T++ Q F+RG PL LE Sbjct: 145 TTLHAGGKFDSGAYQTSGGLHGVGVSVVNALSESLEVEVARGQTLYRQSFARGKPLGRLE 204 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE- 253 + K N+RGTR+ F PDP+IFG A F ARL+KM ++KAYL G V+ W C E E Sbjct: 205 EVGKAPNRRGTRVRFTPDPQIFGKGAQFKPARLVKMARAKAYLFGGVEIRWRCAPERIEP 264 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-N 312 P + F+FPGGLK +L +E + + IF GK EK G H G++EWA+AW + Sbjct: 265 GSSTPREAVFHFPGGLKDFLAVDIEGKERVIEPIFAGKIEKPGGH-GSLEWALAWLAMDD 323 Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILS 371 + SYCNTI T +GG HE+GLR AL RG+K +AE +RA +I +DD+M S ++S Sbjct: 324 GFVHSYCNTIPTPDGGAHEAGLRAALLRGLKDHAERIGQSRRAAAISADDVMGSCAALVS 383 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 +FIREPEF GQ K++L+S +A R V+ +RD FDH+L P A KLL+W +ER+E+RLR Sbjct: 384 IFIREPEFQGQNKSRLMSAEASRIVDQTVRDAFDHWLAAAPSHALKLLDWAVERAEDRLR 443 Query: 432 RRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RR +++V RKTA RKLRLPGKLADCS A G+ELFIVEGDSAGGSAKQ RNR++QA+LP Sbjct: 444 RRAEKDVARKTASRKLRLPGKLADCSNTAAQGSELFIVEGDSAGGSAKQGRNRASQAILP 503 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 LRGKILNVASA +K+ NQQ+ DL+ ALGC + YRE++LRYEK+IIMTDADVDGAHI Sbjct: 504 LRGKILNVASATRDKLAANQQLSDLMLALGCGVGAHYREDELRYEKIIIMTDADVDGAHI 563 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611 ASLL+TFFY++ LIE HL+L PPL+R+TQG + VYA D+ H+ +++ G+GK Sbjct: 564 ASLLITFFYRQTPKLIEGGHLYLAVPPLYRLTQGARQVYARDDAHRDELIARVL-TGRGK 622 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 IEISRFKGLGEML +QLKET MD KR LLRV + + T DS+ +LMG K + RF Sbjct: 623 IEISRFKGLGEMLPAQLKETTMDPGKRNLLRVVV--LPEDREGTSDSVERLMGNKPEARF 680 Query: 672 KFIQERASFID 682 FIQERA+F + Sbjct: 681 AFIQERAAFAN 691 >gi|301300621|ref|ZP_07206811.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851775|gb|EFK79469.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 673 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 366/654 (55%), Gaps = 33/654 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +NY+ SI++L+GLE VR RPGMYIG TD + LHHL E+ DNA+DE ++GY I V Sbjct: 2 PKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDTRGLHHLVYEIFDNAVDEALSGYGKEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + +TVVDNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 IIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS +L V R + + F + G P+ L K K + K GT++TF+PD IF Sbjct: 120 SVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ L + + A+L VK + ++ +EEF + G+K +++ E Sbjct: 180 T-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFVEYLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ ++ + + +K G VE A + + I S+ N + T +GGTHE+G++ A Sbjct: 234 DKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + ++ D+ ++SV I E +F GQTK KL + +A+ Sbjct: 290 WTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEAR 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 + V++ + + ++L++N A +L+ I+ E R RK R+ +R R+ L Sbjct: 350 QIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 410 GKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI +LLLTFFY+ M +I Sbjct: 470 EEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 529 Query: 571 HLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL++I + YA + + + +E KK + R+KGLGEM A Sbjct: 530 RVYIALPPLYKIEKTVKKKRVIKYAWTDAELESVTKELKK----GYTLQRYKGLGEMNAD 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV+I+ D + + LMG K + R K+I++ F Sbjct: 586 QLWETTMNPETRTLVRVKIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 635 >gi|290580369|ref|YP_003484761.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans NN2025] gi|254997268|dbj|BAH87869.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans NN2025] Length = 649 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 364/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNQIDVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSITVADHGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P + LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMPDTGIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + ++ E F++ G++ +++ E+ Sbjct: 187 N-FVYNTIAERLNESAFLLKNVTLTLTDERSE-----ETEHVAFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ I+ E VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KEILTPVIYFEGEEAD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRLPG 451 V+ + + ++L++N A+ L+ I+ E R RK R+ +R K L G Sbjct: 357 IVDGLVSEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGRKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A + I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++ +D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGAGPDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + + ++F K + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K R K+I++ F Sbjct: 593 LWETTMNPENRTLIRVTIED----LARAERRVNVLMGDKVPPRRKWIEDNVKF 641 >gi|32447712|gb|AAO16799.1| ParE [Streptococcus oralis ATCC 35037] Length = 647 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ + E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSSLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEDALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELAPNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|313680912|ref|YP_004058651.1| DNA gyrase subunit b [Oceanithermus profundus DSM 14977] gi|313153627|gb|ADR37478.1| DNA gyrase subunit B [Oceanithermus profundus DSM 14977] Length = 637 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 253/652 (38%), Positives = 367/652 (56%), Gaps = 29/652 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++L+GLE VR RP MYI GT H L +E++DN++DE +AGYA+ I+V+L Sbjct: 4 YDASSIKVLKGLEGVRKRPAMYIAGTGTDGYHQLLTEILDNSVDEALAGYADTIKVTLHK 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +V DNGRGIPV+ K +E+I T LHAGGKF+ Y++SGGLHGVG SVVN Sbjct: 64 DGSASVEDNGRGIPVDVMA-GEGKPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASVVN 122 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 AL+D + V V R + +F+RG PLE K + K GTR+ F PD IF + F Sbjct: 123 ALTDWMVVEVWRGGKHYRIEFARGEVKKPLEVVGKAPKGKTGTRVHFMPDATIFEEGLEF 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D R+ + + +YL+G ++ + ++ ++E F+ GG+ ++ + E L Sbjct: 183 DYRRVRRRVREVSYLAGGLRIELADERS-------GKQEVFHDKGGVASFAKALAEGEDL 235 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + + + V+ + SY N I T +GG H SG R A TR Sbjct: 236 LYDKPGRLSGQVDDV---EVDVGFIHTKGYTTQLLSYANMIPTRDGGVHLSGFRGAYTRA 292 Query: 342 IKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + +YA+ ++ DDL+ ++SV I +P+F GQTK KL++ +A+R V + Sbjct: 293 MNQYAKKAGLQKNGQPKPSGDDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAERAVSSV 352 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + +L NP A + + ++ R RK RE V R+ + LPGKLADC Sbjct: 353 VYEKLMDFLESNPRIAKTIYDKAQRAAQAREAARKARELVRRQNPLESDDLPGKLADCQT 412 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K N ++ ++ Sbjct: 413 EEPDEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEVRAMIA 472 Query: 519 ALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 A+G + + + + +RY K+I+MTDADVDG+HI +LLLTFFY+ M +I++ +L+ Sbjct: 473 AIGAGIQGTGDEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLY 532 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ G +S Y D+E + L++ G K EI RFKGLGEM QL ET M Sbjct: 533 IAQPPLYKLKVGRRSEYIFDDEALKAALKKV---GDKKYEIQRFKGLGEMNPEQLWETTM 589 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L +V I L + LMG R +FI+E A F + + Sbjct: 590 NPETRVLKQVTIEDALY----ASEIFEDLMGADVQPRREFIEENAKFAE-LD 636 >gi|228478351|ref|ZP_04062959.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126] gi|228250030|gb|EEK09300.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126] Length = 649 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 235/653 (35%), Positives = 370/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ +E A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 241 KETLTPVIYI----DGDQQEFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + ++L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + +++ ++F + + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|319757988|gb|ADV69930.1| topoisomerase IV subunit B [Streptococcus suis JS14] Length = 647 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 371/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHH+ E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGNGLHHMVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G L+V D GRG+PV H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLSVSDRGRGMPVGMH--ATGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F + G P++ LEK ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L +V + ++ E+EE+++ G++ ++ E+ Sbjct: 186 TDFKFNTIAERLKESAFLLKQVTMTLTDER-------TGEQEEYHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G V+ A+ + + + S+ N + T +GGTHE+GL++A+ Sbjct: 239 KETLTPV-LYFEGEDAG---FQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 ++ PPL+++++G K YA + + + ++F K + R+KGLGEM A Q Sbjct: 535 GYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGK----GFILQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + ++ LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVSVLMGDKVEPRRKWIEDNVKF 639 >gi|254486692|ref|ZP_05099897.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101] gi|214043561|gb|EEB84199.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101] Length = 653 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 343/654 (52%), Positives = 447/654 (68%), Gaps = 10/654 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 QS+ YDASSI++LE +E VR+RPGMYIGG D++ALHH+ +E+IDN+MDE +AG+A Sbjct: 6 SGAQSSGKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IE+ L NG +TV DNGRGIP + HPK P+KS LEII TL+AGGKF +YE SGGL Sbjct: 66 TWIELELHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALSD L V VAR +++ +FSRGIP LEK N+RGT +TF PD + Sbjct: 126 HGVGSSVVNALSDHLRVEVARNRELYAMEFSRGIPQGKLEKIGAAPNRRGTSVTFHPDAE 185 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IFG+ ARL M +SKAYL V+ W K + P + F+FPGGL YL Sbjct: 186 IFGN-LTLKPARLFAMARSKAYLFSGVEIRW---KTSQKDGDTPSEATFHFPGGLSDYLN 241 Query: 275 TKLENRSLISSEIF--TGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 L+ + + F ++K G VEWA+ W + I SYCNTI T EGGTHE Sbjct: 242 ETLKGSTSYADAPFGGMVDFKEKFGVPGKVEWAVNWTPSRDGFIQSYCNTIPTPEGGTHE 301 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G A+ +G+K Y EL NK+A +I +DL+ ++S FIREPEF GQTK +L ++D Sbjct: 302 AGFWAAILKGVKAYGELVGNKKAGTITREDLITGGCALVSCFIREPEFVGQTKDRLATVD 361 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 AQR VENA+RD FD++L N A +L++++ R+EERLRRR+++E RKTA +KLRLPG Sbjct: 362 AQRMVENAVRDHFDNWLASNTKSAGAILDFLVLRAEERLRRRQEKETARKTATKKLRLPG 421 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC+ GTELFIVEGDSAGGS K ARNR NQA+LPL+GKILNV A S K+ N Sbjct: 422 KLTDCTSKNREGTELFIVEGDSAGGSGKGARNRVNQALLPLKGKILNVLGAASGKLNTNA 481 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I DL +ALG S++ +DLRY+K+IIMTDADVDGAHIA+LL+TFFY +M +I+ H Sbjct: 482 EINDLCEALGVGMGSKFVLDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDAGH 541 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L+L PPL+R+TQG K VY D+ K LE+ GKGKI++ RFKGLGEM A LKET Sbjct: 542 LYLACPPLYRLTQGAKRVYVSDDAEKDLWLEK-GLGGKGKIDLQRFKGLGEMDAKDLKET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD + R L+RV + +D + +T D + +LMG K + R+++IQE A F++++ Sbjct: 601 TMDPSTRKLIRVTVQED--TPGETGDLVERLMGKKPELRYQYIQENAQFVEELD 652 >gi|32448552|gb|AAO16803.1| ParE [Streptococcus pneumoniae] Length = 638 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 36/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V+++ Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTIN 60 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 61 KDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 N S L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFST-T 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + A+L V + + E EF++ G++ ++ E++ Sbjct: 178 DFKYNTISERLNESAFLLKNVTLSLTDKR-------TDESVEFHYENGVQDFVSYLNEDK 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+T Sbjct: 231 ETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 286 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 287 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L GK Sbjct: 347 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 406 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N++ Sbjct: 407 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 466 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 467 INTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEVGHV 526 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A QL Sbjct: 527 YIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQL 582 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 583 WETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 630 >gi|157151650|ref|YP_001450529.1| DNA topoisomerase IV subunit B [Streptococcus gordonii str. Challis substr. CH1] gi|157076444|gb|ABV11127.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 649 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVSDHGRGMPVGMH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|328957567|ref|YP_004374953.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4] gi|328673891|gb|AEB29937.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4] Length = 675 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 233/657 (35%), Positives = 363/657 (55%), Gaps = 35/657 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE ++G+ Sbjct: 11 PKELNKEYNDDSIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEALSGFGTE 70 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V+L + ++V DNGRG+P+ H T+++I T LHAGGKF Y+ SGGLHG Sbjct: 71 IDVTLHKDNSISVKDNGRGMPIGMH--SSGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHG 128 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS+ L VT+ R+ + QKF G L+K + K GT + F+PDP I Sbjct: 129 VGASVVNALSEWLTVTIIREGVHYQQKFVEGGKAKGSLKKIKTNNEKNGTIVHFKPDPTI 188 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F L + + A+L ++ + ++ + E FY+ G+K ++ Sbjct: 189 FTTTN-LSYDVLAERLRESAFLLKGLRITLTDER-------NEQSEVFYYEEGIKEFVSY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 E++ ++ + E VE++ + + I S+ N + T +GGTHE+G+ Sbjct: 241 LNEDKDNLTPV-AYFEGENNEI---EVEFSFQYNDGYSETILSFVNNVRTKDGGTHEAGM 296 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 + A+T+ +YA ++ ++ D ++S+ I E +F GQTK+KL + Sbjct: 297 KTAITKTFNEYARKVNLLKEKEKNLEGTDFREGLAAVISIRIPENLLQFEGQTKSKLGTP 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL- 449 A+ VE + D + YL++N + +L+ ++ E R RK RE +R RK Sbjct: 357 QARSAVETVVSDQLNFYLIENGDLSQQLIRKALKAREARDAARKAREESRNGKKRKKNDT 416 Query: 450 --PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 GKL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + + Sbjct: 417 LLSGKLTPAQSKNAKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDV 476 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G ++ D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L Sbjct: 477 MKNEEISTMIYTIGAGVGPEFDIADCNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLF 536 Query: 568 EQKHLFLISPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E ++L PPL+++++ G K YA ++ ++ ++F K+ + R+KGLGEM Sbjct: 537 EAGKVYLALPPLYKLSRGIGKKEKIAYAWTDDELVQVTKDFGKN----YILQRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL +T M+ RTL+RV+I+ + ++ LMG K + R K+I+ F Sbjct: 593 NADQLWDTTMNPETRTLIRVKIDD----AAQAEKRVSVLMGDKVEPRRKWIESHVEF 645 >gi|56963754|ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus clausii KSM-K16] gi|56909997|dbj|BAD64524.1| DNA topoisomerase IIA subunit B [Bacillus clausii KSM-K16] Length = 656 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 238/650 (36%), Positives = 361/650 (55%), Gaps = 32/650 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY N I+V++ Sbjct: 7 EYNEDAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVYEIVDNAVDEALGGYGNTIKVTIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +++ D GRG+PV H K T E+I T LHAGGKF Y SGGLHGVG SVV Sbjct: 67 KDQSVSIEDEGRGMPVGMH--RSGKPTPEVIFTVLHAGGKFGQGGYATSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L V + R ++Q+F + G P++ LEKK K R GT + F+PD IF Sbjct: 125 NALSEWLEVEIKRDGYRYTQRFEQGGKPVTTLEKKGKTR-ASGTTVRFKPDEGIFST-IQ 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F++ L + + A+L V+ + + E E F F GL+ ++ E + Sbjct: 183 FNSEILAERLREAAFLLKGVQIELTDKRPEKE-----LHEVFKFDTGLEAFVDYLNEGKE 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + ++ A+ E + S+ N + T +GGTHE G + A+TR Sbjct: 238 ALHPVVSFSGSANDIQMDFSFQFHDAYTE---NVLSFVNNVRTRDGGTHELGAKTAMTRI 294 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 + ++A ++ ++ D+ ++SV + E +F GQTK+KL + +A+ V+ Sbjct: 295 MNEHARKIGVLKEKDKNLDGSDIREGFTAVVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLA 454 + + ++L +NP AT LL+ ++ ++ R RK RE R K + GKL Sbjct: 355 AIVSENLSYFLEENPAVATMLLKKAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLT 414 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + I N++I Sbjct: 415 PAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIR 474 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +G + + D Y+KV+IMTDAD DGAHI LLLTFFY+ M LI++ +++ Sbjct: 475 TIIHTIGAGVGADFDSADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIYI 534 Query: 575 ISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G+ + YA DE Q L++ + + R+KGLGEM A+QL E Sbjct: 535 ALPPLYKVSKGSGKKEQVEYAWDENELQAALKKVGRGS----TVQRYKGLGEMNATQLWE 590 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T MD RTL+RV + + + LMG K + R K+I+ +F Sbjct: 591 TTMDPATRTLIRVRLED----AARAEKHVATLMGDKVEPRRKWIESHVAF 636 >gi|322370371|ref|ZP_08044930.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253] gi|320550079|gb|EFW91734.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253] Length = 638 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 242/650 (37%), Positives = 370/650 (56%), Gaps = 23/650 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AGY + I+V++ Sbjct: 5 NEYSAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCDSIDVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +++ D+GRGIPV+ H ++ + LE+ILT LHAGGKFDN +Y++SGGLHGVGISV Sbjct: 65 HEDNSVSIADDGRGIPVDRHEEY-DMPALEVILTVLHAGGKFDNKSYQVSGGLHGVGISV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDK 219 VNALS++ V V R ++ Q F RG P +E+ +R+ GT F PD +IF Sbjct: 124 VNALSEKFDVEVKRDGGVWKQTFERGDPAGEMERVRDMRDDEETGTYQRFWPDTEIFET- 182 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + L + A+L+ V + +++ + + F++ GG++ +++ E Sbjct: 183 TDFTYSTLENRLRELAFLNSGVAITLADERD------EEKGDTFHYSGGIREFVEYLNET 236 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +E+ + E VE A+ +E I ++ N I T EGGTH +G + AL Sbjct: 237 KTALHNEVIYFEDEDDNIQ---VEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTAL 293 Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + YA ++ +D+ ++SV +P+F GQTKTKL + + + V Sbjct: 294 TRVVNDYANDNDMLGDLDENLRGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 E+A+ + Y ++P A ++ + V + ++ + RK+A+ LPGKLAD Sbjct: 354 ESAVHEGLSVYFEEHPDTAQAIISKAVEAAKARKAAKKAEELTRRKSALESSALPGKLAD 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +ELF+VEGDSAGGSAKQAR+R QA+LPL GK+LNV +++ N++I + Sbjct: 414 CQSRDPTKSELFVVEGDSAGGSAKQARDREFQAILPLFGKVLNVEKHRLDRVLENEKIRN 473 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G ++ +D RY K+IIMTDADVDGAHI +L LT Y+ M L+E +++ Sbjct: 474 FITAIGTGVGEEFDIDDARYHKIIIMTDADVDGAHIRTLYLTLLYRYMRPLLEAGYVYAA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+ K+ A EE ++ + E K G ++ RFKGLGEM QL ET M+ Sbjct: 534 QPPLYRVRYRGKTYDAMTEE-ERDEIIEEKCDGNPS-QVQRFKGLGEMNPEQLWETTMNP 591 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L ++ I + LMG R +FIQ+ A+ + V Sbjct: 592 ENRILKQITIED----AAAADKMFSVLMGDAVGPRKQFIQDHATEAEWVD 637 >gi|315194271|gb|EFU24664.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS00] Length = 665 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 240/654 (36%), Positives = 360/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ + + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIRAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|462227|sp|P34031|GYRB_SPICI RecName: Full=DNA gyrase subunit B gi|49348|emb|CAA79523.1| DNA gyrase subunit B [Spiroplasma citri] gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B Length = 640 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 261/650 (40%), Positives = 378/650 (58%), Gaps = 19/650 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNY++ SI+ILEGLE +R RPGMYIG T+ + LHHL E++DN++DEV+A +AN I++ L Sbjct: 3 DNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIIL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+DNGRGIP+E HPK STLE + T LHAGGKFD++TY+ISGGLHGVG SV Sbjct: 63 NKDESITVIDNGRGIPIEIHPK-TKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V + N + +F G + K+ ++ GT +TF PD KIF + Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKETTI 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L+ ++ +E E+ + + F G+K Y+ + Sbjct: 182 FSFSTIQNRIKQLVFLNKGLEISLVDLREEDEE----KTVLYQFNNGIKDYVLELNKTIG 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +++F + + VE+ + + + I S+CN I T EGGTHE G R+A+ R Sbjct: 238 TPLNDVFYVEGIEDNI---VVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVR 294 Query: 341 GIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 I Y + NK DD+ I+S+ EP++ GQT KL++ + ++ V Sbjct: 295 EINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIV 354 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 N + YL++NP +A K++E + + + ++ +E RK + LPGKL+D Sbjct: 355 SNIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSD 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C A EL+IVEGDSAGGSAK RNR QA+LPLRGKILNV A KI N +I Sbjct: 415 CETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINS 474 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG + + ++ LRY+KVIIMTDADVDGAHI LLLTFFY+ M DLIE ++++ Sbjct: 475 IITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIA 534 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ + Y + + + EE K K I R+KGLGEM QL ET MD Sbjct: 535 QPPLYKVENSNQIRYVYSDNELELYKEELLKQNK-NYTIQRYKGLGEMNPEQLWETTMDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LL+V +N + N+LMG + R KFI+E A ++ ++ Sbjct: 594 ERRLLLKVSVNNAF----EANLICNELMGENVEPRKKFIRENAKYVKNLD 639 >gi|301066454|ref|YP_003788477.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang] gi|300438861|gb|ADK18627.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang] Length = 670 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 248/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP IF Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L + + ++ + + +++P GL ++++ Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + E + N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A +R ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ ++ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635 >gi|323351521|ref|ZP_08087175.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis VMC66] gi|322122007|gb|EFX93733.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis VMC66] Length = 649 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + ++ E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|126652425|ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905] gi|126590846|gb|EAZ84960.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905] Length = 658 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 241/659 (36%), Positives = 356/659 (54%), Gaps = 35/659 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N+ + Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ Sbjct: 1 MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V + + ++V D GRG+P H K T EII T LHAGGKF Y+ SGGL Sbjct: 61 SHIIVKIHKDQSISVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L VT+ R + Q+F G P++ LE+ + + + GT + F PD Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGQTK-QTGTLVHFLPDE 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ L + + A+L +K ++E + + F++ G++ ++ Sbjct: 178 TIFSVT-KYNYDTLAERLRESAFLLKGLKIELIDERE------EGKNDMFFYENGIEAFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 E + ++ + + VE+A + + I S+ N + T +GGTHE+ Sbjct: 231 AYLNEEKDVLHPVKYVEGIQDD----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHET 286 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G + ALTR +YA + ++ D+ I+SV I E +F GQTK KL Sbjct: 287 GAKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLG 346 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-- 446 + +A+ V++ + + + L +N + L+ I + R RK RE R K Sbjct: 347 TSEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKG 406 Query: 447 -LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GKL A EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N A + Sbjct: 407 STILSGKLTPAQSRNAARNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQ 466 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ A+G + + ED Y KV+IMTDAD DGAHI LLLTFFY+ M Sbjct: 467 DIMKNEEISTIIHAIGAGVGTDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRP 526 Query: 566 LIEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 LIE +F+ PPL+++++G K V YA E QK +++ K + R+KGLG Sbjct: 527 LIEAGKVFIALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGK----GYILQRYKGLG 582 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL +T M+ + RTL+RV I + + LMG K + R K+I+ F Sbjct: 583 EMNADQLWDTTMNPDTRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 637 >gi|325689651|gb|EGD31655.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK115] Length = 649 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 368/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + ++ E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTDEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|319946623|ref|ZP_08020857.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus australis ATCC 700641] gi|319746671|gb|EFV98930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus australis ATCC 700641] Length = 649 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 253/658 (38%), Positives = 377/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + ++ YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEELKQETTGQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS +L V V + I Q++ RG ++ LE + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTQLDVHVHKNGQIHYQEYKRGQVVADLEVIGET-DRTGTTVHFTP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + FD +L K Q A+L+ ++ + +E E + +++++ GG+ + Sbjct: 180 DPEIFTETTVFDFDKLNKRIQELAFLNRGLRISITDKREGQE-----QTKDYHYEGGIAS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y++ EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVEYINENKDVIFETPIYTDGELDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYARKNKLLKDNEENLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447 + + + D F +L++NP A K++E ++ +R + +K+ + Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y E + LE + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAEALERYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVTVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644 >gi|125718052|ref|YP_001035185.1| DNA topoisomerase IV subunit B [Streptococcus sanguinis SK36] gi|125497969|gb|ABN44635.1| Topoisomerase IV subunit B, putative [Streptococcus sanguinis SK36] Length = 649 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 368/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + ++ E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMSDILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|328949784|ref|YP_004367119.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884] gi|328450108|gb|AEB11009.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884] Length = 637 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 255/654 (38%), Positives = 356/654 (54%), Gaps = 29/654 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YDASSI++L+GLE VR RP MYI GT H L SE++DNA+DE +AGYAN I+V+L Sbjct: 2 STYDASSIKVLKGLEGVRKRPAMYIAGTGTDGYHQLLSEILDNAVDEALAGYANEIKVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +V DNGRGIPV P + +E+I T LHAGGKF+ Y++SGGLHGVG SV Sbjct: 62 HADGSASVEDNGRGIPVGIMP-GEGRPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 VNALS V V R + +FSRG + PL + GTR+ F PD IF Sbjct: 121 VNALSAWTVVEVFRDGKHYRIQFSRGRVVEPLTELGPAPKHKTGTRVHFLPDATIFEPGL 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD R+ + + ++L+G +K +++ E E F+ GG+ ++ + E Sbjct: 181 EFDFRRVRRRVREVSFLAGGLKIILKDERKGKE-------EVFHDKGGVASFAKALAEGE 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 L+ + + + V+ + + +Y N I T +GG H SG R A T Sbjct: 234 ELLYDKPVRLHGQVEDV---EVDVGLIHTKGYTTELLTYANMIPTRDGGVHLSGFRTAYT 290 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + KYA+ + +DL+ ++SV I +P+F GQTK KL++ +AQ V Sbjct: 291 RALNKYAQRAGLVKNGQPTPSGEDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAQSAVT 350 Query: 398 NALRDPFDHYLVQNPIEAT-KLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + D +L +NP A + + R+ + V R+ + LPGKLADC Sbjct: 351 KVVYDQLMEHLERNPRVAKLIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K N +I + Sbjct: 411 QTENPDEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEIRAM 470 Query: 517 VQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 V A+G + E +RY K+I+MTDADVDG+HI +LLLTFFY+ M +IE + Sbjct: 471 VAAIGAGIDGTGQDGHFDLESVRYHKIILMTDADVDGSHIRTLLLTFFYRYMRPVIEAGY 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L++ PPL+R+ G K Y +D+E +K L + EI RFKGLGEM QL ET Sbjct: 531 LYIAQPPLYRLKVGRKIEYVYDDETLRKKLAALEGKP---YEIQRFKGLGEMNPEQLWET 587 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ R L +V I L + + +LMG++ R +FI+E A F + + Sbjct: 588 TMNPETRVLRQVTIEDAL----EANEIFERLMGSEVAPRREFIEENARFAE-LD 636 >gi|329733638|gb|EGG69966.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21193] Length = 665 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 362/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIDDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPK 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV+++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVDDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|22537312|ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae 2603V/R] gi|22534182|gb|AAN00036.1|AE014244_13 DNA topoisomerase IV, B subunit [Streptococcus agalactiae 2603V/R] Length = 653 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 236/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 14 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 74 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 132 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 190 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 245 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 246 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 302 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 303 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 362 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 + + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 363 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 423 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 483 NTMIHTIGAGVGPDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 542 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 543 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 599 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 645 >gi|307706405|ref|ZP_07643215.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321] gi|307618192|gb|EFN97349.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321] Length = 647 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGMVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L +T M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWKTTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|285817032|gb|ADC37519.1| Topoisomerase IV subunit B [Staphylococcus aureus 04-02981] gi|312829750|emb|CBX34592.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 665 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 363/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R +I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM + Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNSE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|323444006|gb|EGB01617.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O46] Length = 663 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 240/654 (36%), Positives = 360/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 ++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAADSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|313664969|ref|YP_004046840.1| DNA gyrase, B subunit [Mycoplasma leachii PG50] gi|312949334|gb|ADR23930.1| DNA gyrase, B subunit [Mycoplasma leachii PG50] Length = 634 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + DNGRGIPV + KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S Sbjct: 62 ITKENEVIIQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGQTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ AL Sbjct: 234 NKINPNIFYVDSKYENI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ ++ RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 ++ EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSNIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 V A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 VTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDNQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|307298739|ref|ZP_07578542.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915904|gb|EFN46288.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 631 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 373/649 (57%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SD Y+A +I+IL+GL+PVR RPGMYIG T + LHHL E++DN++DE + G+ + I + Sbjct: 2 SDLYNAQNIKILKGLDPVRKRPGMYIGSTGKSGLHHLVYEIVDNSIDEAMGGFCDRINIV 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G + V DNGRGIP++ HP S LE+++TTLHAGGKF +Y+ISGGLHGVG S Sbjct: 62 ITEDGSVIVSDNGRGIPIDIHP-DTGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + V V I+ QK+ RG L+P+E + N+ GT +F+PDP +F Sbjct: 121 VVNALSEWMIVEVMVDGKIYRQKYERGKALAPVEVVGET-NETGTVTSFKPDPLVFTV-T 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + AYL+G +K + + ++ ++F GG+ +++ +N+ Sbjct: 179 DFDFDILEARFKELAYLNGGIKITFEDRRIGEKRS-------YHFEGGIVEFVKALTKNK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 I + + ++ A+ + +I ++ N I T EGGTH +G + LT Sbjct: 232 KSIHKDPIYLEGTYNDV---KIQLAMQYTSSYDEDILTFVNNIKTIEGGTHLTGFKTVLT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + + ++ +DL ILSVF++EP+F GQTK KL + +A V Sbjct: 289 KTMNDVGRKHNVLKDKDPNLQGEDLREGLSAILSVFVKEPQFEGQTKAKLGNDEAFEAVM 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 +++ + Y N + +L +E S RL +K RE+ RK A+ LPGKLADC Sbjct: 349 KVVKEKLEEYFDYNQKDLKAILSKALEASRARLAAKKAREMVRRKNALENTTLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 TE+FIVEGDSAGGSAK AR+R QA+LPLRGKILNV AG +++ ++ I ++ Sbjct: 409 ISENLDETEIFIVEGDSAGGSAKMARSRETQAILPLRGKILNVEKAGLDRMLKSETISNI 468 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + ++LRY K+IIMTDADVDGAHI +LLLT FY+ M LI +++ Sbjct: 469 IVALGTGMGEDFEIKNLRYGKIIIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQ 528 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL++I + Y + +E L+E H K+ SRFKGLGEM QL ET M+ N Sbjct: 529 APLYKIELNRQKHYFYSDEELTTFLKE---HSDRKLNYSRFKGLGEMNPEQLWETTMNPN 585 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L+++ I ++ LMG++ +ER FIQ A I ++ Sbjct: 586 DRKLVKITIED----AEEADRVFTILMGSEVEERRSFIQRHALSISNLD 630 >gi|261749362|ref|YP_003257047.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497454|gb|ACX83904.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 642 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 269/653 (41%), Positives = 386/653 (59%), Gaps = 31/653 (4%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + +Y A SI+ LEG+E +R+RP MYIG + LHHL EVIDN++DE +AGY N I Sbjct: 2 SNKNTDYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVCEVIDNSVDESLAGYCNKI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ NGF+TV+DNGRGIP++ H K KS LE+++T + AGGKFD ++Y++SGGLHGV Sbjct: 62 WVTIHKNGFITVLDNGRGIPIDIHKK-EGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GIS VNALS L VTV R I+ Q++ RG P+ ++ + + +GT+I + D IF Sbjct: 121 GISCVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGET-HLQGTKIHYLADNSIFN 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L + A+L+ + ++ E E+F+ GLK YL Sbjct: 180 S-ITYHYEILSTRLKELAFLNKGLHLFLKDERNNIE-------EDFFSKNGLKEYLSILD 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N+ + I + EK+ T VE A+ + +I SY N I T EGGTH SG R Sbjct: 232 KNQESLIRNIIFIEGEKEDTI---VEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRR 288 Query: 337 ALTRGIKKYA-----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 ALTR KKY K + + DD I+S+ + EP+F GQTKTKL + + Sbjct: 289 ALTRTFKKYTDGLLSNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHE 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 V+ + + + YL +NP E K+++ VI ++ R +K RE+ +K + I LP Sbjct: 349 VGGIVDKIVGEMLNSYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILP 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS N E+++VEGDSAGG+AKQ R+RS QA+LPLRGKILNV A KI N Sbjct: 409 GKLADCSFNNPENCEIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFEN 468 Query: 511 QQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++I ++ +LG + LRY K+IIMTDAD+DG+HI++L+LT F++ M Sbjct: 469 EEIRNIFTSLGVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKP 528 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE+ H+++ +PPL+ I +G S YA +E ++KIL+ + + KI I R+KGLGEM A Sbjct: 529 LIEKGHIYIATPPLYLIRKGNHSQYAWSDEEREKILQRLGR--RKKINIQRYKGLGEMNA 586 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 QL ET M+ KRTL +V I +L + + LMG + R FI++ A Sbjct: 587 EQLWETTMNPKKRTLRKVHIE----NLSEADKIFSILMGEEVPPRRSFIEKNA 635 >gi|306833366|ref|ZP_07466493.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC 700338] gi|304424136|gb|EFM27275.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC 700338] Length = 649 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 237/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NSDGSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ E EF++ G++ +++ E+ Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I ++ VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA + ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G +++ E+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K ++ R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGRKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641 >gi|13541372|ref|NP_111060.1| DNA gyrase subunit B [Thermoplasma volcanium GSS1] gi|14324756|dbj|BAB59683.1| DNA gyrase subunit b [Thermoplasma volcanium GSS1] Length = 641 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 266/658 (40%), Positives = 372/658 (56%), Gaps = 35/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNYD+S I+ILEGL+ VR PGMYIG TD + LHHL EV+DN++DE +AG+ + I V + Sbjct: 4 DNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGFCSNIYVKI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V D+GRGIPV+ HPK+ N+ LEI+LT LH+G KFD Y+I+GGLHGVG+ V Sbjct: 64 GKDGSVLVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKITGGLHGVGVHV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-----------NKRGTRITFR 210 VNALS +L V R I+ + F +GIP L+ E GT I F Sbjct: 123 VNALSSKLIAVVKRDGHIYYEVFEKGIPKEGLKTVEDKSVLEKFGIDIKYPGHGTIIKFY 182 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF F +L AYL+ ++ ++ E ++ GG+ Sbjct: 183 PDPEIFETT-EFSKETILARVTDLAYLNPQLTITLEDER-------TGSLETLHYEGGIV 234 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGT 329 ++ E ++LI ++ ++ VE+A + + + SY N I T EGGT Sbjct: 235 ELVKHLSEGKNLIVDPLYW----REEVDHYIVEFAFTYTTDVQEILQSYVNNISTPEGGT 290 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 H +G L+R I+ YA + + DD+ + +L + +++P+F GQTK KL Sbjct: 291 HVAGFHQGLSRAIQDYARSNGKIKGVDDITGDDVKEGVIAVLHIKMQDPQFEGQTKAKLG 350 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + V++ +L NP A +L V+ + R RK +E V RK+A+ Sbjct: 351 NSKVRGIVQSITSKFVKTFLETNPHIADLILSRVLSAAAAREASRKAKELVRRKSALEGG 410 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N + TEL+IVEGDSAGGSAKQARNR QAVLPLRGKILNV A K+ Sbjct: 411 GLPGKLADCSSNDPNNTELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKV 470 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N+ I DLV A+G + LRY K+IIMTDADVDGAHI +LLLTFF++ LI Sbjct: 471 VENEIIKDLVVAIGTGVKEDINPRKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLI 530 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 E +++ PPL+RI +G Y + EE K K+ EF + I RFKGLGEM Q Sbjct: 531 ENGNVYFAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPNAI----IQRFKGLGEMNPEQ 586 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L +T M+ R L++V I ++ + + LMG K + R +FI+E A + +++ Sbjct: 587 LWDTTMNPKTRKLVQVTIQD----AEEAERIFSILMGEKVEPRRRFIEENAVYAENID 640 >gi|83319520|ref|YP_424038.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283406|gb|ABC01338.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 634 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 256/649 (39%), Positives = 381/649 (58%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y A SI++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+LI V+ Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDNSIDEAMAGYADLINVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + DNGRGIPV + KS L ++ T LHAGGKFD+ TY+ISGGLHGVG S Sbjct: 62 ITKENEVIIQDNGRGIPVGINS-DTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + V V R N + Q FS G ++ + RGT++ F+PDP+IF + Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLRGTKVKFKPDPEIFKETV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD + + A+L+ +K + ++ I + E+ F G+ Y++ K E + Sbjct: 181 VFDYEVIKNKVKQLAFLNKGLKITLTDER-------IEKTVEYLFLNGILDYIKEKNETK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I+ IF ++ + VE A+ + + I ++ N I T EGGTHE GL+ AL Sbjct: 234 NKINPNIFYVDSKYEDI---EVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALI 290 Query: 340 RGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +YA+ + NK DD+ + ILSV +P++ GQTKTKL + DA+ V Sbjct: 291 RDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVN 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 + + F+ +L+++P +A +L+ + + R+ ++ RE RK+A+ LPGKLADC Sbjct: 351 IIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 ++ EL++VEGDSAGGSAK RNR QA+LPLRGK+LNV + +N +I + Sbjct: 411 ETKDSNIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSI 470 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 V A+G + + LRY+K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ Sbjct: 471 VTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL++I G K YA+ + ++ + K I R+KGLGEM QL ET MD Sbjct: 531 PPLYKIEAGKKIAYAYTDNQLDELKN--NEFNNLKYTIQRYKGLGEMDPLQLWETTMDPQ 588 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +RT+L++ + + + LMG + R +IQ+ A F++++ Sbjct: 589 QRTMLQISLEDAT----LANEVFSDLMGEDPELRKIYIQDNAKFVENID 633 >gi|81428587|ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacillus sakei subsp. sakei 23K] gi|78610229|emb|CAI55278.1| Topoisomerase IV, subunit B [Lactobacillus sakei subsp. sakei 23K] Length = 663 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 246/656 (37%), Positives = 369/656 (56%), Gaps = 33/656 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +Y+ +SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ I Sbjct: 2 PNQKQDYNDNSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFGAEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D+GRG+P H T+E+ILT LHAGGKF ++Y+ SGGLHGV Sbjct: 62 NVTIGADNSISVRDHGRGMPTGMH--QSGIPTIEVILTVLHAGGKFTQNSYKTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R + ++F G P+ L+K K GT ITF+PD IF Sbjct: 120 GASVVNALSEWLTVRVVRDGVAYEERFENGGHPVGTLKKVGKANEPNGTLITFKPDASIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 ++ L + + A+L VK + + +++ F++P G+++++ Sbjct: 180 QV-TTYNYNTLAERLRESAFLLKDVKITLTDLR-----ADPAKEDVFHYPEGIQSFVDYL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E++ I ++++ T++ VE+A + + I S+ N + T +GGTHE+G++ Sbjct: 234 NEDKDTIGNKLYFEGTKED----IEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMK 289 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 LT+ YA +R ++ D+ +LSV I E +F GQTK KL S Sbjct: 290 AGLTKAFNDYARKVNLLKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQ 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-- 449 A+ V+N + + +L++N A L+ ++ E R RK RE +R +K Sbjct: 350 ARTAVDNLVYEQMSFFLLENGEFAQALVRKSLKAREAREAARKAREQSRNGKKKKKSDGL 409 Query: 450 -PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 GKL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A ++I Sbjct: 410 LSGKLTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQEIL 469 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 470 KNEEINTMIYTIGAGVGAEFKIEDSNYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIE 529 Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL+++ +G TK YA ++ + + +E K RFKGLGEM Sbjct: 530 AGKVYIALPPLYKLQKGAGGKTKIAYAWTDDELKVVAKEMGK----GYSQQRFKGLGEMN 585 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL +T MD RTL+RV I+ + + LMG K + R K+I+E F Sbjct: 586 ADQLWDTTMDPTSRTLIRVRIDD----AALAERRVTTLMGDKVEPRRKWIEENVKF 637 >gi|227890873|ref|ZP_04008678.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC 11741] gi|227867282|gb|EEJ74703.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC 11741] Length = 690 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 244/659 (37%), Positives = 364/659 (55%), Gaps = 33/659 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +NY+ SI++L+GLE VR RPGMYIG TD + LHHL E+ DNA+DE ++GY Sbjct: 14 KEKSMPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIFDNAVDEALSGYG 73 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V + + +TVVDNGRG+PV H T+E+I T LHAGGKF Y+ SGGL Sbjct: 74 KEINVIIHKDDSITVVDNGRGMPVGMHSM--GIPTVEVIFTVLHAGGKFGQGDYKTSGGL 131 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS +L V R + + F + G P+ L K K + K GT++TF+PD Sbjct: 132 HGVGASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDA 191 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ L + + A+L VK + ++ +EEF + G+K ++ Sbjct: 192 NIFSTT-KYNFNTLAERLRESAFLLKGVKITLTDER-----TDPYTEEEFLYAEGIKEFV 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E++ ++ + + +K G VE A + + I S+ N + T +GGTHE+ Sbjct: 246 EYLNEDKDVLGPVM-YFEGKKDGI---EVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEA 301 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G++ A T+ +YA + ++ D+ ++SV I E +F GQTK KL Sbjct: 302 GMKAAWTKAFNEYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLG 361 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 + +A++ V++ + + ++L++N A +L+ I+ E R RK R+ +R R+ Sbjct: 362 TPEARQIVDSVVNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKS 421 Query: 449 ---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 422 ERLLSGKLTPAQSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 481 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ +G +++ +D Y+KVIIMTDAD DGAHI +LLLTFFY+ M Sbjct: 482 DIMKNEEINTMIYTIGAGVGAEFNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRP 541 Query: 566 LIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 +I +++ PPL++I + YA + + +E KK + R+KGLG Sbjct: 542 MINAGRVYIALPPLYKIEKTVKKKRVIKYAWTDAELESATKELKK----GYTLQRYKGLG 597 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL ET M+ RTL+RV I+ D + + LMG K + R K+I++ F Sbjct: 598 EMNADQLWETTMNPETRTLVRVRIDDDT----IAEKRVTTLMGDKVEPRRKWIEKNVKF 652 >gi|324992846|gb|EGC24766.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK405] gi|324994514|gb|EGC26427.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK678] gi|327462153|gb|EGF08480.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1] Length = 647 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|269124013|ref|YP_003306590.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112] gi|268315339|gb|ACZ01713.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112] Length = 660 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 260/671 (38%), Positives = 367/671 (54%), Gaps = 38/671 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + NY SI +LEGL+ VR+RPGMYIG T + LHHL E++DN++DE +AG + I V Sbjct: 2 SEKNYGGESITVLEGLDAVRVRPGMYIGTTSSRGLHHLVWEIVDNSIDEALAGVCDTITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + + ++DNGRGIP + H KSTLE+++T LHAGGKFDNS Y+ SGGLHGVGI Sbjct: 62 KMLPDSEIEIIDNGRGIPTDMHK--SGKSTLEVVMTVLHAGGKFDNSNYQFSGGLHGVGI 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218 SVVNALS++L TV R + Q FS+G ++ + K GT I F+PD IF Sbjct: 120 SVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGKAPAKAHGTTIKFKPDADIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L + + AYL+ +K + K ++E FYF GG+ ++ + Sbjct: 180 I-QFDYDILQRRLKELAYLNQGIKIILIDAR----KPEKVKEEVFYFEGGIVDFVTELVG 234 Query: 279 NRSLISSEIFTG------KTEKKGTHRG------TVEWAIAWCEENPEITS-YCNTILTD 325 +I I+ + E VE A+ + I + N I T Sbjct: 235 EDKIIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIAMIYKNSQSTIEYSFVNNINTS 294 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 +GGTH SGLR ALTR I A +K +D+ V +LS+ EP+F QTK Sbjct: 295 DGGTHVSGLRTALTRTINDLAREASSKNEFK--GEDVREGLVYVLSLKFPEPQFESQTKA 352 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL S +A V YL +P + +++ + + R ++ R+ V +K Sbjct: 353 KLGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAISKQAREAAKRARDLVTKKNEF 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC +E+FIVEGDSAGGSAKQ R + QA+LPLRGKILNV A Sbjct: 413 SLGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRFKEYQAILPLRGKILNVEKANE 472 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 KI N +I ++ A G ++ E LRY K+IIMTDADVDGAHI +L+LTFFY+ + Sbjct: 473 HKILENSEIKAMITAFGAGFGDRFDIEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRYLR 532 Query: 565 DLIEQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKIL----EEFK--KHGKGKIEI 614 +LI H+++ PPL+++T + + YA+ +E + I E+ GK K + Sbjct: 533 ELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVDNSGKNKYNV 592 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM QLKET MD + RTLL+V + + + LMG K + R +FI Sbjct: 593 QRYKGLGEMNPDQLKETTMDPDVRTLLKVTLED----AQYADKMFSILMGDKVEPRREFI 648 Query: 675 QERASFIDDVG 685 +E A+++ ++ Sbjct: 649 EEHANYVRNLD 659 >gi|77405922|ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B] gi|77175496|gb|EAO78284.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B] Length = 642 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 237/651 (36%), Positives = 366/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 3 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 63 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 ++ + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 352 DSIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 472 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634 >gi|288905177|ref|YP_003430399.1| DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34] gi|306831248|ref|ZP_07464408.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731903|emb|CBI13468.1| Putative DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34] gi|304426484|gb|EFM29596.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 649 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 237/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NSDGSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ E EF++ G++ +++ E+ Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I ++ VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA + ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G +++ E+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K ++ R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641 >gi|312863196|ref|ZP_07723434.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396] gi|311100732|gb|EFQ58937.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396] Length = 649 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 234/653 (35%), Positives = 368/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NNDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGNVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ +E A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + ++L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + +++ ++F + + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG K R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641 >gi|227535108|ref|ZP_03965157.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187249|gb|EEI67316.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 670 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP IF Sbjct: 121 SSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGTLQKLGKVNEPNGTTITFKPDPTIFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L + + ++ + + +++P GL ++++ Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + E + N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A +R ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ ++ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y+K+IIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 469 NEEINTMIYTIGAGVGADFDMQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635 >gi|24379696|ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans UA159] gi|290580305|ref|YP_003484697.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025] gi|24377654|gb|AAN58957.1|AE014963_1 putative DNA gyrase subunit B [Streptococcus mutans UA159] gi|254997204|dbj|BAH87805.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025] Length = 650 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 378/649 (58%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 12 AQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 72 IEEDNSITVIDDGRGIPVDIQQK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG+ L+ + GT + F PDP+IF + Sbjct: 131 VVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITGTIVHFTPDPEIFTETT 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ +K + + E+ EEF++ GG+ +Y++ EN+ Sbjct: 190 EFDFDKLAKRIQELAFLNKGLKISITDKRSGQERK-----EEFHYEGGIVSYVEFINENK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 +I + G +VE A+ + I S+ N I T EGGTHE G R ALT Sbjct: 245 EVIFDKPIYTDGSLDGI---SVEVAMQYTTGFHENIMSFANNIHTHEGGTHEQGFRTALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + + ++ DD+ I+SV P+F GQTKTKL + + + Sbjct: 302 RVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVKITN 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 D + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKLADC Sbjct: 362 RLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 422 SSNDPIQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSL 481 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 482 FTAMGTGFGAEFDVSKSRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQ 541 Query: 577 PPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ I G+ Y EE Q+ LE++ G+ K + R+KGLGEM QL ET Sbjct: 542 PPIYGIKVGSDIKEYIQPGNDQEEKLQEALEKYS-QGRSKPTVQRYKGLGEMDDHQLWET 600 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ + R + RV ++ + + LMG + + R FI+E A + Sbjct: 601 TMNPDNRLMARVSLDD----AAEADKIFDMLMGDRVEPRRGFIEENAVY 645 >gi|24379635|ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococcus mutans UA159] gi|24377587|gb|AAN58896.1|AE014957_9 putative DNA topoisomerase IV, subunit B [Streptococcus mutans UA159] Length = 649 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 363/653 (55%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNQIDVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSITVADHGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P + LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMPDAGIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + ++ E F++ G++ +++ E+ Sbjct: 187 N-FVYNTIAERLNESAFLLKNVTLTLTDERSE-----EIEHVAFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ I+ E VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KEILTPVIYFEGEEAD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V+ + + ++L++N A+ L+ I+ E R RK R+ +R K G Sbjct: 357 IVDGLVLEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A + I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++ +D Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGAGPDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + + ++F K + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAM----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K R K+I++ F Sbjct: 593 LWETTMNPENRTLIRVTIED----LARAERRVNVLMGDKVPPRRKWIEDNVKF 641 >gi|319745151|gb|EFV97474.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus agalactiae ATCC 13813] Length = 653 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 14 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 74 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 132 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 190 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 245 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 246 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 302 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 303 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 362 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 + + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 363 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 422 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 423 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 482 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 483 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 542 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 543 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 599 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 645 >gi|23099148|ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831] gi|22777376|dbj|BAC13649.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831] Length = 651 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 246/651 (37%), Positives = 368/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y SSI++LEGL+ VR RPGMYIG TD + LHHL E++DNA+DE +AGY I+V++ Sbjct: 6 QYSDSSIQVLEGLDAVRKRPGMYIGSTDIRGLHHLVYEIVDNAVDEALAGYGKEIQVTIH 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D+GRG+P H K T E+I T LHAGGKF +Y+ SGGLHGVG SVV Sbjct: 66 KDESVSVKDSGRGMPTGMH--QTGKPTTEVIFTVLHAGGKFGQGSYKTSGGLHGVGASVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGI-PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT R + Q+F G P++ LEKK R +G+ I F+PDP IF Sbjct: 124 NALSEWLEVTTFRDGFQYQQRFENGGRPVTTLEKKGPTRK-KGSVIRFKPDPTIFSTIV- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ + + + A+L +K ++ + + + +P GLK+++ E + Sbjct: 182 YNYETISERLRESAFLLKGLKIELIDERH-------DKHDVYEYPEGLKSFVDYLNEEKD 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + S + E+ VE+A + + + S+ N + T +GGTHESG R A+TR Sbjct: 235 ALHSI-VFMEGEQ---QEIEVEFAFQFNDGFAENMLSFVNHVRTRDGGTHESGARTAITR 290 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 + YA ++ ++ D+ G++SV + E +F GQTK KL + +A+ V Sbjct: 291 TVNDYARRQGLLKEKEKNLEGTDIREGLTGVVSVRVPEDKLQFEGQTKGKLGTTEARSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKL 453 ++ + + +++L +NP + L++ I+ E R RK RE R RK + GKL Sbjct: 351 DSVISEHLNYFLEENPDISGMLIKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A + + N++I Sbjct: 411 TPAQSRNPEKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D++Y+K+IIMTDAD DGAHI LLLTFFY+ M L+E +F Sbjct: 471 STIIHTIGAGVGGDFNLDDVQYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIF 530 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPLF++++G K YA DE+ + ++E K I R+KGLGEM A QL Sbjct: 531 IALPPLFKVSKGKGKQEKLRYAWDEQELKVAIQEL----KQGYTIQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV I+ + + + LMG K + R K+I+ F Sbjct: 587 ETTMNPSSRTLIRVSIDD----IARAERRVTTLMGDKVEPRRKWIEGHVKF 633 >gi|191638405|ref|YP_001987571.1| DNA topoisomerase IV subunit B [Lactobacillus casei BL23] gi|190712707|emb|CAQ66713.1| Topoisomerase IV, subunit B [Lactobacillus casei BL23] gi|327382434|gb|AEA53910.1| DNA topoisomerase IV subunit B [Lactobacillus casei LC2W] gi|327385633|gb|AEA57107.1| DNA topoisomerase IV subunit B [Lactobacillus casei BD-II] Length = 670 Score = 594 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP IF Sbjct: 121 SSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L + + ++ + + +++P GL ++++ Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + E + N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A +R ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ ++ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y+K+IIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635 >gi|327460298|gb|EGF06635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1057] gi|328946252|gb|EGG40396.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1087] Length = 647 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|239942665|ref|ZP_04694602.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 15998] gi|239989124|ref|ZP_04709788.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 11379] Length = 690 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 249/687 (36%), Positives = 373/687 (54%), Gaps = 28/687 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + IP + + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 10 ADSGNPNENIPSTAGEPGEVPETSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 69 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV P K +E++LT LHA Sbjct: 70 EVVDNSVDEAMAGHADTIDVTILPDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 128 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL K E Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 188 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 189 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 246 Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 + +++ G+ +++ + + + + +VE A Sbjct: 247 SADAAEPAEAEAARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 306 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362 + W + + S+ N I T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 307 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDV 366 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ Sbjct: 367 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 426 Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK Sbjct: 427 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 486 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RN QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 487 RNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 546 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + + Sbjct: 547 ADADVDGQHINTLLLTFLFRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 606 Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 607 VALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDD----AAQADDL 662 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 663 FSVLMGEDVEARRSFIQRNAKDVRFLD 689 >gi|83280994|dbj|BAE53571.1| gyrase beta subunit [Thermoplasma acidophilum] Length = 641 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 260/659 (39%), Positives = 367/659 (55%), Gaps = 33/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 DNYD+S I+ILEGL+ VR PGMYIG TD + LHHL EV+DN++DE +AGY + I V Sbjct: 2 TEDNYDSSQIQILEGLKAVRKVPGMYIGSTDTRGLHHLVYEVVDNSVDESVAGYCSRIYV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G +TV D+GRGIPV+ HPK+ N+ LEI+LT LH+G KFD Y+++GGLHGVG+ Sbjct: 62 VMGSDGSITVEDDGRGIPVDIHPKY-NRPGLEIVLTELHSGAKFDKKVYKLTGGLHGVGL 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-----------RGTRIT 208 VVNALS +L V R I+ F +GIP+S L+ V G I Sbjct: 121 HVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPEHGAIIK 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP IF F +L +YL+ ++ + + K+ + GG Sbjct: 181 FYPDPDIFETT-EFSYETILARLTDLSYLNPQLTITFLDE-------ASGRKDILHHEGG 232 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGG 328 L ++ E + + ++ + ++ + + + S+ N I T EGG Sbjct: 233 LIELVRHLSEGKEALMEPLYLKEEVDSHMVEFSLLYTT---DVQETLMSFVNNISTPEGG 289 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 TH +G L+R I+ YA + + DD+ + +L V ++ P+F GQTK+KL Sbjct: 290 THVAGFHQGLSRAIQDYARSNNKIKGVEDITGDDVKEGVIAVLHVKMQNPQFEGQTKSKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 + + V++ ++ NP A ++ V+ + R RK +E V RK+A+ Sbjct: 350 GNSSVRGIVQSVTAKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEG 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADCS N +EL+IVEGDSAGGSAKQARNR QAVLPLRGKILNV A K Sbjct: 410 GGLPGKLADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + N+ I DLV A+G + + LRY K+IIMTDADVDGAHI +LLLTFF++ L Sbjct: 470 VVENEIIHDLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSL 529 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE ++F PPL+RI +G Y + +E K+++ EF + I RFKGLGEM Sbjct: 530 IENGNVFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPNAI----IQRFKGLGEMNPE 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ R L++V I ++ + LMG K + R KFI+E A + +++ Sbjct: 586 QLWETTMNPKTRKLVQVTIED----AEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640 >gi|50953931|ref|YP_061219.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950413|gb|AAT88114.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07] Length = 663 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 249/665 (37%), Positives = 357/665 (53%), Gaps = 21/665 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A +Y A+ I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA Sbjct: 5 PNRAEAEHDYGANEIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYA 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV + +G + V DNGRGIPV+ HP KST+E++LT LHAGGKF Y +SGGL Sbjct: 65 DNIEVMILPDGSVRVFDNGRGIPVDEHP-VQKKSTVEVVLTILHAGGKFGGGGYAVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS L V V RQ ++ Q + G+P +PLE+ E+ GT I F P P+ Sbjct: 124 HGVGSSVVNALSTRLDVEVRRQGHVWRQSYRNGVPQAPLEQGEET-EATGTTIVFWPSPE 182 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-----EIAEKYGIPEKEEFYFPGGL 269 F FD L Q A+L+ ++ + + A++ P E F + GL Sbjct: 183 TFET-VEFDYDTLRTRFQQMAFLNKGLRIAIADQRPVSAEGEADEESEPRGEVFLYEKGL 241 Query: 270 KTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 Y+ + E + + +E A+ W + +Y NTI T EG Sbjct: 242 TDYVHYLNAAKKAEVVHDEIISFELEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEG 301 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G R ALT + +YA + ++ DD+ ++SV + EP+F GQTKT Sbjct: 302 GTHEEGFRAALTSLVNRYAREKNILKDKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKT 361 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KL + +A+ V+ D + +NP +A +++ ++ + R+ RK RE R+ + Sbjct: 362 KLGNTEAKAFVQKVAGDQLADWFDRNPNQAKEIIRKALQAATARIAARKARETARRKGLL 421 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 +PGKL DC +E+FIVEGDSAGGSA Q RN QA+LPLRGKILNV A Sbjct: 422 ESGGMPGKLKDCQSKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARL 481 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++ N ++ ++ A G + E RY K+++M DADVDG HI +LLLT ++ M Sbjct: 482 DRALANNEVQAMITAFGAGIGEDFDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMR 541 Query: 565 DLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGL 620 LIE +++L PPL+R+ Y + + + L E GK + + R+KGL Sbjct: 542 PLIELGYVYLAQPPLYRLKWSNADDEYVYSDRDRDAFLAEGLAAGKRIPKDNGVQRYKGL 601 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM +L ET M+ RTLL+V ++ + LMG + R FIQ+ A Sbjct: 602 GEMDYKELWETTMNPETRTLLQVTLDD----AAAVDEIFTTLMGEDVESRRSFIQKNAKD 657 Query: 681 IDDVG 685 + + Sbjct: 658 VRFLD 662 >gi|81427621|ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609260|emb|CAI54307.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K] Length = 658 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 257/666 (38%), Positives = 371/666 (55%), Gaps = 20/666 (3%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + + ++ A + + +YDAS I++LEGLE VR RPGMYIG T + LHHL E+ Sbjct: 2 ADDQLNKETEAQIEAKEERAKSYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEI 61 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDN +DE +AG+A I V ++ + +TV D+GRGIPV K KS LE + T LHAGG Sbjct: 62 IDNGIDEALAGFATEINVVVEPDNSITVTDDGRGIPVGIQAK-TGKSALETVFTILHAGG 120 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF Y++SGGLHGVG SVVNALS EL V + + F RG +P++ Sbjct: 121 KFGGGGYKVSGGLHGVGASVVNALSTELDAVVTQGGKRYYIDFKRGKVQTPMKMIGDAPE 180 Query: 202 K-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT++ F PDP IF + +D L + A+L+ +K ++ + + Sbjct: 181 HEHGTKVHFVPDPDIFTETTIYDDKILTTRIRELAFLNKGLKLTFTDKRADTHEKLE--- 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F++ GG+K+Y++ E + + E + E+ G TVE A+ + + + ++ Sbjct: 238 --FHYEGGIKSYVEFLDEKKETLLDEPIYVEGEQNGI---TVEVALQYTNDYRTNLLTFA 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP 377 N I T EGGTHESG + ALTR I YA + ++ +D+ ++SV +P Sbjct: 293 NNIHTYEGGTHESGFKTALTRVINDYATKQNIFKASDANLSGEDVREGLTAVVSVKHPDP 352 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQR 436 +F GQTKTKL + DA+ + D F +L++NP A ++++ + +R + Sbjct: 353 QFEGQTKTKLGNADARSVTDRMFSDHFTKFLMENPSIARQIVDKGSLAARARLAAKRARE 412 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 +K + LPGKLAD S +ELFIVEGDSAGGSAK R+R QA+LP+RGKI Sbjct: 413 VTRKKNGLEISNLPGKLADNSSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKI 472 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A EKI N++I L A+G ++ E RY K+IIMTDADVDGAHI +LLL Sbjct: 473 LNVEKASMEKILANEEIRTLFTAMGTGFGQEFDVEKARYHKLIIMTDADVDGAHIRTLLL 532 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 T FY+ M ++E ++++ PPL+R+ QG Y +E Q +L + K E+ R Sbjct: 533 TLFYRYMRPIVEAGYVYIAQPPLYRVKQGKMMRYIDSDEELQDVLGTLQPS--PKPEVQR 590 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM ASQL ET MD R +LRV + ++ LMG + + R FI+E Sbjct: 591 YKGLGEMDASQLWETTMDPENRRMLRVNVED----AEEADQIFEMLMGDRVEPRRLFIEE 646 Query: 677 RASFID 682 A ++D Sbjct: 647 NAVYMD 652 >gi|283470569|emb|CAQ49780.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus ST398] Length = 665 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G ++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISTEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis] gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis] Length = 732 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 247/678 (36%), Positives = 384/678 (56%), Gaps = 22/678 (3%) Query: 17 QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 Q + + F ++S Y + I++L+GLEPVR RPGMYIG T + LHH Sbjct: 64 QNAGSARAFMSSSTATEPFQESASSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHH 123 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 L E++DNA+DE AGYA+ ++V L + +++ DNGRGIP + HP KS LE +LT Sbjct: 124 LVYEILDNAIDEAQAGYASRVDVILHSDNSVSISDNGRGIPTDLHP-VTKKSALETVLTV 182 Query: 137 LHAGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 LHAGGKF NS Y +SGGLHGVG+SVVNALS+ L VTV R + Q++SRG P++ L Sbjct: 183 LHAGGKFGGSNSGYSVSGGLHGVGLSVVNALSEGLEVTVWRDGMEYRQRYSRGNPVTILM 242 Query: 195 KKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 + R+++GT + F PD ++F FD + + A+L+ ++ + Sbjct: 243 CHSLAVESRDRQGTCVRFWPDKEVFTTAIEFDYNTIAGRVRELAFLNPKLTITLKKEDND 302 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 EK + +E+++ GGL Y++ ++ + + GK T ++W Sbjct: 303 PEKN---QYDEYFYAGGLIEYVKWLNTDKKPLHDVVGFGKEIDGITIDMALQWCS--DAY 357 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 + I Y N+I T +GGTH G + +LTR + + ++ ++ I++ + + I Sbjct: 358 SDTILGYANSIRTIDGGTHIDGFKASLTRTLNSLGKKSKIIKEKDINLSGEHVREGLTCI 417 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 +SV + PEF GQTKT+L + + ++ V+ ++++ YL +P +L + + Sbjct: 418 VSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAA 477 Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 L +K RE V +K+ +R LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA Sbjct: 478 LAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 537 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547 +LPLRGKILN+ + N++I +L+ LG + + +++ LRY K+II+TDADVD Sbjct: 538 ILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 597 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHI +LLLTFF++ L E+ +++ PPL+++ +G + Y +DE +K+ F ++ Sbjct: 598 GAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERGKQVYYCYDEAELKKLRSSFPQN 657 Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 I RFKGLGEM+ QL ET MD +R L ++ + + + LMG + Sbjct: 658 --ASYNIQRFKGLGEMMPLQLWETTMDPEQRLLKQLVVED----AAEANVVFSSLMGARV 711 Query: 668 DERFKFIQERASFIDDVG 685 D R + IQ A + ++ Sbjct: 712 DVRKELIQSSARAV-NID 728 >gi|325696560|gb|EGD38450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK160] Length = 647 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYTDNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|322517179|ref|ZP_08070062.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus vestibularis ATCC 49124] gi|322124238|gb|EFX95754.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus vestibularis ATCC 49124] Length = 649 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 234/653 (35%), Positives = 368/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NNDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ +E A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 297 TKALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + ++L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGVDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + +++ ++F + + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAI----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG K R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641 >gi|73916418|gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS+ L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + +++ + E G VE A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 239 KEILTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+L LRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILSLRGKVVNTAKAKMADILKNK 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|322372517|ref|ZP_08047053.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150] gi|321277559|gb|EFX54628.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150] Length = 649 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 234/653 (35%), Positives = 367/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEEIR-----EEFHYENGVQDFVTYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ +E A+ + + + S+ N + T +GGTHE+G + A+ Sbjct: 241 KETLTPVIYI----DGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 297 TKAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + ++L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 IVDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + +++ ++F + + R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG K R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKPAPRRQWIEDNVKF 641 >gi|239631506|ref|ZP_04674537.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525971|gb|EEQ64972.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 670 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP IF Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L + + ++ + + +++P GL ++++ Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + E + N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A +R ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ ++ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y+K+IIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635 >gi|1708090|sp|P50075|GYRBS_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-sensitive gi|581743|emb|CAA78952.1| gyrase B (novobiocin-sensitive) [Streptomyces caeruleus] Length = 684 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 248/689 (35%), Positives = 377/689 (54%), Gaps = 30/689 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + P N + +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL + Sbjct: 2 ADSGNPNENTPSVATGENGEVTGSYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVT 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHA Sbjct: 62 EVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS ++ V V ++Q + G+P + E Sbjct: 121 GGKFGGGGYSVSGGLHGVGVSVVNALSTKVAVEVKTDGYRWTQDYKLGVPTRRCAQNEAT 180 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----- 254 ++ GT +TF DP +F + L + Q A+L+ + + ++E A+ Sbjct: 181 -DETGTTVTFWADPDVFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKAVVGAD 238 Query: 255 -----------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 +Y+ GG+ +++ + + + +VE Sbjct: 239 VAGTDSAETPGEEPVRSVTYYYEGGIVDFVKYLNSRKGDLIHPTVIDIDAEDKERMLSVE 298 Query: 304 WAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 A+ W + E + S+ NTI T EGGTHE G R A+T + +YA + ++ ++ + Sbjct: 299 IAMQWNSQYSEGVYSFANTIHTHEGGTHEEGFRAAMTGLVNRYAREKKFLREKDDNLAGE 358 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ I+SV + EP+F GQTKTKL + +A+ V+ + + + ++P EA ++ Sbjct: 359 DIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKIVHEHLTDWFDRHPNEAADIIR 418 Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I+ + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK Sbjct: 419 KSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAK 478 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 RN QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I Sbjct: 479 SGRNPQYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKII 538 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598 +M DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + Sbjct: 539 LMADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERD 598 Query: 599 KILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++E K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ Sbjct: 599 ALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDD----AAQAD 654 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 D + LMG + R FIQ A + + Sbjct: 655 DLFSVLMGEDVEARRSFIQRNAKDVRFLD 683 >gi|327474459|gb|EGF19865.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK408] Length = 649 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 366/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|325687511|gb|EGD29532.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK72] Length = 649 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAL----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|77408988|ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1] gi|77172411|gb|EAO75559.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1] Length = 642 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 3 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 63 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 + + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 352 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 472 NTMIHTIGAGVGPDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634 >gi|294155877|ref|YP_003560261.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145] gi|291599921|gb|ADE19417.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145] Length = 646 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 369/659 (55%), Gaps = 27/659 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++NY+AS+I+ LEGLE VR RPGMYIG T + LHH+ E++DN++DE +AG+AN+I+ Sbjct: 2 EKNNNYEASNIKFLEGLEHVRRRPGMYIGTTSKDGLHHMIWEIVDNSVDEAMAGFANIIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ + + V DNGRGIPV H +F S LE++LT L+AGGKF+++ Y++SGGLHGVG Sbjct: 62 ITITDDDRIIVEDNGRGIPVGIHERF-GISALEVVLTKLNAGGKFESNAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIF 216 SVVNALSD + V R+ I +F+ G + + GT+I F PD I Sbjct: 121 ASVVNALSDSMKAWVKREGKIHFAEFANGGVTIKSTEVIGTYEGDSSGTKIEFHPDFTIM 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD ++ + A+L+ + ++ EEF F G+ Y+ Sbjct: 181 EKVP-FDKELVVDHAKQIAHLNKGLFVSVKDLRDNT-------YEEFKFDNGIIDYVNEL 232 Query: 277 LENRSLISSEIFTGKT-----EKKGTHRGTVEWAIAWCEENP--EITSYCNTILTDEGGT 329 E + I+ E+ + VE A + + P I SY N I T EGGT Sbjct: 233 NEGYTPINQEVIFAEGTYLSVHNGNERSIGVEIAAQYLSDFPRSNIISYANNIATHEGGT 292 Query: 330 HESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H SG ++ R + YA + +DL I+SV +P+F GQTK KL Sbjct: 293 HVSGFYDSVMRIVNNYAIENGIIKNEAEKFSREDLTEGLTAIISVKHPDPQFEGQTKGKL 352 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 S DA+ V + F+ L +NP+ + K++E + + RL R+ RK+A Sbjct: 353 GSKDARMAVNKVFSEVFERLLNENPVLSKKIIENAVYARKGRLAANAARDNAKRKSAFDN 412 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC+ A +EL++VEG+SAGGSAK R+R+ QA+LPLRGK+LNV A ++ Sbjct: 413 GGLPGKLADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDR 472 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + NN++IM LV ALG + LRY K++IMTDADVDGAHI +LLLTFFY+ L Sbjct: 473 VVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPL 532 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE +++ PPL++I Q YA+++ K +I+ + + KI I R+KGLGEM Sbjct: 533 IEYGFIYIAQPPLYKIQQNKTVEYAYNDAQKDEIITKL--NPTQKINIQRYKGLGEMDPE 590 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD R +L+V+I + + LMG + R +FI++ A ++ ++ Sbjct: 591 QLWETTMDPKNRKMLQVQIEDAYK----ADWAFSTLMGENVEPRREFIEKNAKYVKNID 645 >gi|59798271|sp|Q6G9K5|PARE_STAAS RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B Length = 663 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAD 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 636 >gi|325694452|gb|EGD36361.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK150] gi|327489834|gb|EGF21624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1058] Length = 649 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G S + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGSDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|49486197|ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MSSA476] gi|49244640|emb|CAG43071.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MSSA476] Length = 665 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+ Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEID 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDGSISIEDNGRGMPTGIHK--SGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G S K+ K GT++TF+PD IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E +E +++ G+K ++ E Sbjct: 182 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKE-----RQEHYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVATFSGEANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAD 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA +E K+ +E K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVQPRREWIEKHVEF 638 >gi|299536168|ref|ZP_07049482.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1] gi|298728443|gb|EFI69004.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1] Length = 658 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 240/659 (36%), Positives = 357/659 (54%), Gaps = 35/659 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N+ + Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ Sbjct: 1 MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ + ++V D GRG+P H K T EII T LHAGGKF Y+ SGGL Sbjct: 61 SHIIVTIHKDQSMSVRDFGRGMPTGMHKM--GKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L VT+ R + Q+F G P++ LE + + + GT + F PD Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGQPVTTLENIGQTK-QTGTLVHFLPDE 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F+ L + + A+L +K ++E + + F++ G++ ++ Sbjct: 178 TIFSVT-KFNYDTLAERLRESAFLLKGLKIELIDERE------EGKSDVFFYENGIEAFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 E + ++ + + + VE+A + + I S+ N + T +GGTHE+ Sbjct: 231 AYLNEEKDVLHPVKYVEGVQDE----IEVEFAFQYNDGYSETILSFVNNVRTRDGGTHET 286 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G + ALTR +YA + ++ D+ I+SV I E +F GQTK KL Sbjct: 287 GAKAALTRVFNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLG 346 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-- 446 + +A+ V++ + + + L +N + L+ I + R RK RE R K Sbjct: 347 TSEARSAVDSVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKG 406 Query: 447 -LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GKL A EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N A + Sbjct: 407 STILSGKLTPAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQ 466 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ A+G + + ED Y+KV+IMTDAD DGAHI LLLTFFY+ M Sbjct: 467 DIMKNEEISTIIHAIGAGVGTDFAVEDSAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRP 526 Query: 566 LIEQKHLFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 LIE +++ PPL+++++G K + YA E QK +++ K + R+KGLG Sbjct: 527 LIESGKVYIALPPLYKVSKGTGKKEIIEYAWTESDLQKAIKKVGK----GYILQRYKGLG 582 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL +T M+ RTL+RV I + + LMG K + R K+I+ F Sbjct: 583 EMNADQLWDTTMNPETRTLIRVTIEDG----ARAERRVTTLMGDKVEPRRKWIEANVDF 637 >gi|76786737|ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae A909] gi|76799494|ref|ZP_00781632.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21] gi|77412830|ref|ZP_00789035.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515] gi|76561794|gb|ABA44378.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae A909] gi|76585155|gb|EAO61775.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21] gi|77161126|gb|EAO72232.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515] Length = 642 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 3 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 63 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 121 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 235 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 292 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 + + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 352 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 412 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 472 NTMIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 531 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 532 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 588 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 634 >gi|25011278|ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae NEM316] gi|77412221|ref|ZP_00788540.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111] gi|23095702|emb|CAD46888.1| unknown [Streptococcus agalactiae NEM316] gi|77161728|gb|EAO72720.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111] Length = 649 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 237/651 (36%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V ++ Sbjct: 10 NYGDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIIN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDGSITVTDHGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS L V + R I+ Q+F G P++ L+K ++K GT ++F PD +F Sbjct: 128 NALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI- 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V + ++ E EF++ G++ +++ E++ Sbjct: 187 DFKFNTIAERLKESAFLLKNVTLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ +F E++ +++ + + I S+ N + T +GGTHE+GL+ A+T+ Sbjct: 242 ETLTPIMFFEGEEQEFHIEVALQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITK 298 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTV 396 + YA T ++ ++ D ILS+ + +F GQTK KL S A+ V Sbjct: 299 SMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIV 358 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKL 453 + + + ++L++N A+ L+ I+ + R RK R+ +R K GKL Sbjct: 359 DGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N++I Sbjct: 419 TPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + +D+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H++ Sbjct: 479 NTMIHTIGAGVGPDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVY 538 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G YA + +++ ++F K + R+KGLGEM A QL Sbjct: 539 IALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLW 594 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I L + +N LMG K R ++I++ F Sbjct: 595 ETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVPPRRQWIEDNVKF 641 >gi|324991101|gb|EGC23035.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK353] Length = 649 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|327469984|gb|EGF15448.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK330] Length = 649 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 367/653 (56%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVADHGRGMPVGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R T++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V+ + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE-------VEFHYENGVEDFVTYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + E+ G V+ A+ + + I S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEESG---FQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + D +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 AVDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E Sbjct: 475 EINTMIYTIGAGVGTDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 572 LFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G YA + + +F K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAM----LQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ + RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPDTRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|54021970|ref|YP_116212.1| DNA gyrase subunit B [Nocardia farcinica IFM 10152] gi|54013478|dbj|BAD54848.1| putative DNA gyrase B subunit [Nocardia farcinica IFM 10152] Length = 696 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 246/703 (34%), Positives = 378/703 (53%), Gaps = 48/703 (6%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALH 75 + K P + +N+S S NY ASSI +LEGLE VR RPGMYIG T E+ LH Sbjct: 6 ATRRSASKESYRPVAAKHSNESGSKSTNYGASSITVLEGLEAVRKRPGMYIGSTGERGLH 65 Query: 76 HLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILT 135 HL EV+DN++DE +AGYA ++V+L +G + VVD+GRGIPVE H + T+E+++T Sbjct: 66 HLIWEVVDNSVDEAMAGYATRVDVTLLADGGVEVVDDGRGIPVEMHAQ--GIPTVEVVMT 123 Query: 136 TLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK 195 LHAGGKFD+ +Y +SGGLHGVGISVVNALS + V + +SQ + P ++ Sbjct: 124 QLHAGGKFDSESYAVSGGLHGVGISVVNALSSRVEVEIDVDGYHWSQTYKEATPSKLVK- 182 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK- 254 + ++ GT + F DP+IF ++ + + Q A+L+ + + ++ Sbjct: 183 -GEPTDRTGTTVRFWADPEIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVSESDV 240 Query: 255 -----------------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291 + +++PGGL+ +++ + I + + + Sbjct: 241 TDEIVSETAEAPKHGEPTGEAASEHKVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFT 300 Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + G +E A+ W + ++ NTI T EGGTHE G R ALT + KYA+ + Sbjct: 301 GKGTGH---ELEVAMQWNSGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKK 357 Query: 351 NKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 + ++ DD+ I+SV + EP+F GQTKTKL + + + V+ + H+ Sbjct: 358 LLKEKDGNLTGDDIREGLAAIVSVKVAEPQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWF 417 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467 NP +A +++ + ++ R+ RK RE V RK+A LPGKLADC +E++ Sbjct: 418 EANPADAKTIVQKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSKDPSKSEIY 477 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSAGGSAK R+ QA+LPLRGKI+NV A +K+ N ++ ++ A G + Sbjct: 478 IVEGDSAGGSAKSGRDSMYQAILPLRGKIINVEKARIDKVLKNNEVQSIITAFGTGIHDE 537 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586 + LRY K+++M DADVDG HI++LLLT ++ M L+E H++L PPL+++ Sbjct: 538 FDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRS 597 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642 + +A+ + + +LE GK KI I R+KGLGEM +L ET MD + R L + Sbjct: 598 EPEFAYSDRERDGLLERGLAAGK-KINKDDGIQRYKGLGEMNPKELWETTMDPSVRVLRQ 656 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ + + LMG + R FI A + + Sbjct: 657 VTLDD----AAAADELFSVLMGEDVEARRSFITRNAKDVRFLD 695 >gi|291446126|ref|ZP_06585516.1| gyrase B [Streptomyces roseosporus NRRL 15998] gi|291349073|gb|EFE75977.1| gyrase B [Streptomyces roseosporus NRRL 15998] Length = 682 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 249/687 (36%), Positives = 373/687 (54%), Gaps = 28/687 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + IP + + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 2 ADSGNPNENIPSTAGEPGEVPETSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV P K +E++LT LHA Sbjct: 62 EVVDNSVDEAMAGHADTIDVTILPDGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL K E Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 180 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 181 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 238 Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 + +++ G+ +++ + + + + +VE A Sbjct: 239 SADAAEPAEAEAARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 298 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362 + W + + S+ N I T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 299 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDV 358 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ Sbjct: 359 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 418 Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK Sbjct: 419 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 478 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RN QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 479 RNPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 538 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + + Sbjct: 539 ADADVDGQHINTLLLTFLFRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 598 Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 599 VALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDD----AAQADDL 654 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 655 FSVLMGEDVEARRSFIQRNAKDVRFLD 681 >gi|329666396|gb|AEB92344.1| DNA gyrase subunit B [Lactobacillus johnsonii DPC 6026] Length = 655 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+I Sbjct: 2 AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGK Sbjct: 62 DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 F Y++SGGLHGVG SVVNALS +L VTV R ++ F G + +++ V Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 EHGTIVRFYPDPDIFTETITFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++F GG+K Y+ + + ++ E + +G VE A+ + + ++ N Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+ Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPSPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437 F GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKIL Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+ Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPIVQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L RV +D + LMG + R +FI++ Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 678 ASFIDDVGT 686 A +++++ Sbjct: 647 AKYVENLDA 655 >gi|116494894|ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334] gi|116105044|gb|ABJ70186.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334] Length = 670 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 365/655 (55%), Gaps = 35/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+ SSI++L GLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I Sbjct: 3 KATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNSVDEALAGFGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D+GRG+P HP K T+E+ILT LHAGGKF+ ++Y+ SGGLHGVG Sbjct: 63 VTIHADNSVTVQDHGRGMPTGMHP--SGKPTIEVILTVLHAGGKFNQNSYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R F + F + G P L+K KV GT ITF+PDP IF Sbjct: 121 SSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIFQ 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F L + + A+L + + ++ + + +++P GL ++++ Sbjct: 181 TTV-FSYDTLAERLRESAFLLKNITINLTDER-------TGKHDSYHYPDGLVSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRV 336 E + +S I + +K G V++A + + E + N + T +GGTHE GLR Sbjct: 233 EGKDALSQVIN-FEGKKDGI---VVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 +TR ++A +R ++ D+ GILSV I E +F GQTK KL + A Sbjct: 289 GMTRAFNEFARKVGLLRERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL--- 449 + V+ + D +L++N E+ +L+ ++ + R RK R+ +R RK Sbjct: 349 RTVVDGIVYDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQTKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + + Y+K+IIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 469 NEEINTMIYTIGAGVGADFDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDA 528 Query: 570 KHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+R+ +G TK YA +E K + K ++RFKGLGEM A Sbjct: 529 GRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMGK----GYTLTRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV I+ + + + LMG + + R ++I+ F Sbjct: 585 DQLWETTMNPETRTLIRVRIDD----AQLAERRVTTLMGDRVEPRREWIEHNVKF 635 >gi|300814729|ref|ZP_07094977.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511116|gb|EFK38368.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 639 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 379/648 (58%), Gaps = 21/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA I++L+GLEPVR RPGMYIG T EK LHHL EV+DN++DE +AG + I++ + Sbjct: 8 YDAGDIQVLKGLEPVRKRPGMYIGSTGEKGLHHLVYEVVDNSIDEALAGICDHIKIVITK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNG GIPVE HP+ KST+E +LT LHAGGKFDN Y++SGGLHGVG+SVVN Sbjct: 68 DGSCYVEDNGSGIPVEIHPQ-TGKSTVETVLTILHAGGKFDNKAYKVSGGLHGVGVSVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS L T+ R I+SQ+F RG +S L++ KV +N+ GT+I F PDP+IF F Sbjct: 127 ALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDPEIFDTV-EF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L K + A+L+ +K ++ ++ I + E +++ GG+K++++ + Sbjct: 186 SFDILSKRFREMAFLNKGIKIDFTDER-------INKNEIYHYEGGIKSFVEYINSKKKY 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + ++E AI + + E+ ++ N I T+EGG+H SG R A+T+ Sbjct: 239 -EPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + Y ++ ++ DD+ +LSV + P+F GQTK KL + + + V++ Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +L +NP + +LE + R R+ RE++R + LPGKL DCS Sbjct: 358 VSEKLSMFLEENPKTSKVILEKAVAARRARDAARRAREISRAKNNLDMTLPGKLFDCSDV 417 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + +E+F+VEG+SAGGSAK R+ QAVLPLRGKI+NV A K+ N+ +I ++ A Sbjct: 418 GSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMITA 477 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G ++ LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE H+++ PL Sbjct: 478 FGTGYSGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQAPL 537 Query: 580 FRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 + + + +K Y H+EE L+ + I I R+KGLGEM QL ET M+ + R Sbjct: 538 YGLEKNSKILRYCHNEEELNLALKAHESE--KNINIKRYKGLGEMNYDQLWETTMNPDNR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LLRV I +T D+ LMG + + R +FI E A + D + Sbjct: 596 LLLRVNIED----FDETDDTFQMLMGQEVEPRREFISENAQYADYIDA 639 >gi|85708623|ref|ZP_01039689.1| topoisomerase B subunit [Erythrobacter sp. NAP1] gi|85690157|gb|EAQ30160.1| topoisomerase B subunit [Erythrobacter sp. NAP1] Length = 662 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 338/653 (51%), Positives = 452/653 (69%), Gaps = 10/653 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A+ Sbjct: 8 NTPTTSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLAAEVLDNSMDEAVAGHAS 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV L+ L++ DNGRGIPV+ HPK+P KSTLE+ILTTLH+GGKF Y SGGLH Sbjct: 68 RIEVRLEEGNRLSISDNGRGIPVDEHPKYPGKSTLEVILTTLHSGGKFSGKAYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS V VAR +++Q+F++G P+E N+RGT +TF PD +I Sbjct: 128 GVGVSVVNALSSHTRVEVARDKQLYAQEFAKGHTQGPIEVVGAAPNRRGTTVTFTPDTEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FGD F RL K+ +SKAYL V+ W C + + +P + F FPGGL +L Sbjct: 188 FGD-RQFKPHRLFKLARSKAYLFAGVEIRWKCAESLTSDD-VPAEATFKFPGGLADHLAE 245 Query: 276 KLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331 ++ R ++++ FTGK EK G +G+VEWAIAW + + YCNT+ T +GGTHE Sbjct: 246 QVGQRECVTAQPFTGKQEFPEKDGIGQGSVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHE 305 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G+R ALT+G++ + ELT K+A I +DD+M A +LSVFIR+P+F QTK +L S + Sbjct: 306 QGVRGALTKGLRAFGELTGTKKAKDITADDVMTGAEVMLSVFIRDPQFQSQTKDRLTSPE 365 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449 A R VE A+RD FDH+L N LL V+ER +ERL+R+++RE+ RKTA +KLRL Sbjct: 366 AARLVEAAVRDHFDHFLTDNMDRGKALLGEVMERMDERLKRKQEREIKRKTATNAKKLRL 425 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS TELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA ++KIR Sbjct: 426 PGKLTDCSGEGERETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIRA 485 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I DL A+GC TR E LRY+++IIMTDADVDGAHIA+LL+TFF+QEM +++ + Sbjct: 486 NSEIADLTLAMGCGTRKDCDPESLRYDRIIIMTDADVDGAHIATLLMTFFFQEMPEVVRK 545 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HLFL PPL+R+T G +S YA D+ H+ ++ E K K++++RFKGLGEM QL+ Sbjct: 546 GHLFLAQPPLYRLTAGKESRYARDDAHRAELEETVFK--GKKVDVARFKGLGEMNPQQLR 603 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET M R+L+R+ + ++ + +++LMG + RF FIQ RA +D Sbjct: 604 ETTMHPETRSLVRITLPQEFEDRAGVKVLVDQLMGKNPEHRFNFIQNRAGEMD 656 >gi|108796987|ref|YP_637184.1| DNA gyrase subunit B [Mycobacterium sp. MCS] gi|119866071|ref|YP_936023.1| DNA gyrase subunit B [Mycobacterium sp. KMS] gi|126432619|ref|YP_001068310.1| DNA gyrase subunit B [Mycobacterium sp. JLS] gi|108767406|gb|ABG06128.1| DNA gyrase subunit B [Mycobacterium sp. MCS] gi|119692160|gb|ABL89233.1| DNA gyrase subunit B [Mycobacterium sp. KMS] gi|126232419|gb|ABN95819.1| DNA gyrase subunit B [Mycobacterium sp. JLS] Length = 675 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 245/685 (35%), Positives = 366/685 (53%), Gaps = 45/685 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A ++A Y A SI++LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A +EV + NG + V D+GRGIPV H T+++++T LHAGGKF+ Y++SGG Sbjct: 62 ATKVEVRILENGGVQVTDDGRGIPVAMH--STGIPTVDVVMTVLHAGGKFEEGAYQVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L + + Q + R +P + K+ + K GT I F DP Sbjct: 120 LHGVGVSVVNALSTRLEADIRTDGYEWFQTYDRSVPGTL--KQGEKTKKTGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-------------------- 253 IF +D + + Q A+L+ + + ++ AE Sbjct: 178 DIFET-TSYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAEAPKSAEEK 236 Query: 254 -----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 K + F++PGGL +++ ++ I + + +G VE A+ W Sbjct: 237 SAEAAKPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRTALTSVVNKYAKDKKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ RL RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARLAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ + +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLIENGHVFLAQPPLYKLKWQRSTPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 + GK I R+KGLGEM A +L ET MD + R L ++ ++ + + Sbjct: 594 GRAAGKRINADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDD----AAAADELFS 649 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + + Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674 >gi|46199524|ref|YP_005191.1| DNA gyrase subunit B [Thermus thermophilus HB27] gi|46197150|gb|AAS81564.1| DNA gyrase subunit B [Thermus thermophilus HB27] Length = 640 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 267/652 (40%), Positives = 368/652 (56%), Gaps = 29/652 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NYDAS+IR+L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I V L+ Sbjct: 8 NYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV DNGRGIPV+ P+ K +E+I TTLH+GGKF+ Y++SGGLHGVG SVV Sbjct: 68 EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ V V R+ FSRG PL + R K GTR+TF+PDP+IFG+ Sbjct: 127 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 185 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD +++ + AYL +K + + E E F GG+ ++ + E Sbjct: 186 FDPSKIRARLREVAYLVAGLKLVFQDRQHGRE-------EVFLDKGGVASFAKALAEGED 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340 L+ + F + VE + EI +Y N I T +GGTH + + A +R Sbjct: 239 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 295 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ ++ DDL+ ++SV + P+F GQTK KL++ +A V Sbjct: 296 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 355 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + L +NP A + + + R+ + V R+ + LPGKLADC Sbjct: 356 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ +V Sbjct: 416 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 475 Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 A+G + + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE+ H++ Sbjct: 476 SAIGVGIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 535 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ G K Y + +E Q L+E + E+ RFKGLGEM QL ET M Sbjct: 536 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEG---KSYEVQRFKGLGEMNPEQLWETTM 592 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + KR L RVE+ L + + KLMG + R +FI+E A + + + Sbjct: 593 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 639 >gi|312867405|ref|ZP_07727614.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405] gi|311097106|gb|EFQ55341.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405] Length = 649 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + ++ + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS L V V + +I+ Q++ RG + L+ + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFIP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + +D +L K Q A+L+ ++ + +E E +++ +++ GG+ + Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y++ EN+ +I + E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVEYINENKDVIFEKPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447 + + + + F +L++NP A K++E ++ +R + +K+ + Sbjct: 352 NSEVVKITNRLFSEAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y E LE + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644 >gi|271961616|ref|YP_003335812.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270504791|gb|ACZ83069.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 647 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 251/656 (38%), Positives = 368/656 (56%), Gaps = 24/656 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ IEV+L Sbjct: 2 SYDASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADRIEVTLL 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + VVDNGRGIPV + + +E++LT LHAGGKFD+ +Y +SGGLHGVG+SVV Sbjct: 62 ADNGVRVVDNGRGIPVGIV-EAEGRPAVEVVLTVLHAGGKFDSKSYAVSGGLHGVGVSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L V + + Q ++ PL PL K + + GT ITF D IF + Sbjct: 121 NALSSKLEVEIRTDGHHWQQSYAETRPLHPLVK-GEATEETGTSITFWADSTIFET-TTW 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + Q A+L+ + ++ G P++ +++ GGL +++ + Sbjct: 179 NFETLSRRFQEMAFLNKGLTISLRDER-PDHINGEPKEATYHYEGGLSDFVKHLNSKKEP 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + +G +VE A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 238 AHVSVIDFEESGEGI---SVEIAMQWNNSYSESVYTFANTINTAEGGTHEEGFRAALTSI 294 Query: 342 IKKYAELTQNK---RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA + + ++ +D+ I+SV + +P+F GQTKTKL + +A+ V+ Sbjct: 295 VNRYAREQKFLKEGKDDNLAGEDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQK 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADC 456 A D + +NP EA ++ ++ S RL R+ R++ R+ ++ LPGKLADC Sbjct: 355 ACNDHLRDWFERNPGEAKDIINKSLQASRARLAARQARDLTRRKSLLESGSGLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELFIVEGDSAGGSAK R+ QA+LP+RGKILNV A +K+ N ++ L Sbjct: 415 QWSDPEKCELFIVEGDSAGGSAKGGRDSKFQAILPIRGKILNVEKARIDKVLRNTEVQAL 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + A+G ++ LRY K+I+M DADVDG HI +LLLT ++ M LIE H++L Sbjct: 475 ITAMGTGVHDEFDITKLRYHKLILMADADVDGQHINTLLLTLLFRFMRPLIEAGHVYLSQ 534 Query: 577 PPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLK 629 PPL++I +G + YA+ + + I+ + GK I RFKGLGEM ASQL Sbjct: 535 PPLYKIKWDRRGEDASYAYSDPERDAIIADGIARGKRDPRMHDGIQRFKGLGEMNASQLW 594 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET M+ R L V ++ + + LMG + R FI A + + Sbjct: 595 ETTMNPETRVLRLVTLDD----AAQADELFSVLMGEDVEARRSFIIRNARDVRFLD 646 >gi|116333451|ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367] gi|116098798|gb|ABJ63947.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 253/661 (38%), Positives = 363/661 (54%), Gaps = 32/661 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AGY I Sbjct: 3 KAKPKYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGKEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TVVD+GRG+PV H T E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 63 VTIHQDNSITVVDHGRGMPVGMH--ASGIPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L VT+ R + +KF G P L+K R GT I F+PD +IF Sbjct: 121 ASVVNALSSSLTVTIVRDGVRYQEKFAKGGHPQGTLKKLGNTRAHNGTTIDFKPDSQIFT 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ L + + A+L VK + ++E E+ EE++F G+K ++ Sbjct: 181 TTV-YNFGTLAERLRESAFLLKGVKITLTDEREGQERT-----EEYHFESGIKEFVSYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 E++ + K G VE A + + E S+ N + T +GG+HE+G+R Sbjct: 235 EDKDTLGDI-MYFDGSKDGI---EVEVAAQYNDGYTENLLSFVNNVRTKDGGSHEAGMRS 290 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 T+ +YA +R ++ D+ ++S+ + E +F GQTK KL + +A Sbjct: 291 GWTKAFNEYARKVGLLKERDKNLEGTDVREGLSAVISLRVPEDLLQFEGQTKEKLGTPEA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449 + V++ + + +YL++N L++ + + R RK R+ +R K L Sbjct: 351 RTIVDSIISEQLGYYLMENGDFGKMLIKKSTQARQAREAARKARDESRNGKRHKKHERLL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL A ELF+VEGDSAGGSAKQ RNR QA+LPLRGK+LN A I Sbjct: 411 SGKLTPAQSKNAAKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMK 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G +++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +I+ Sbjct: 471 NEEISTMIYTIGAGVGTEFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDA 530 Query: 570 KHLFLISPPLFRITQ-GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+RI + G K YA + + ++ HG + RFKGLGEM A Sbjct: 531 GRIYIALPPLYRIQKTGKKPTIEYAWTNDELNEKTKKIANHG---YHLQRFKGLGEMDAE 587 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685 QL ET MD + RTL+RV+I+ + + LMG K + R K+I+ F ++D Sbjct: 588 QLWETTMDPDNRTLIRVQIDD----AALAERRVTTLMGDKVEPRRKWIESNVQFTLEDDD 643 Query: 686 T 686 T Sbjct: 644 T 644 >gi|242242634|ref|ZP_04797079.1| DNA topoisomerase [Staphylococcus epidermidis W23144] gi|242233770|gb|EES36082.1| DNA topoisomerase [Staphylococcus epidermidis W23144] Length = 664 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636 >gi|16803326|ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria monocytogenes EGD-e] gi|47097246|ref|ZP_00234807.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|224501769|ref|ZP_03670076.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-561] gi|254828649|ref|ZP_05233336.1| parE [Listeria monocytogenes FSL N3-165] gi|254829957|ref|ZP_05234612.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 10403S] gi|254898549|ref|ZP_05258473.1| DNA topoisomerase IV subunit B [Listeria monocytogenes J0161] gi|254911960|ref|ZP_05261972.1| DNA topoisomerase IV [Listeria monocytogenes J2818] gi|254936287|ref|ZP_05267984.1| parE [Listeria monocytogenes F6900] gi|284801671|ref|YP_003413536.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578] gi|284994813|ref|YP_003416581.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923] gi|21328242|gb|AAM48488.1|AF084044_1 DNA topoisomerase IV subunit B [Listeria monocytogenes] gi|16410702|emb|CAC99364.1| parE [Listeria monocytogenes EGD-e] gi|47014371|gb|EAL05343.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|258601049|gb|EEW14374.1| parE [Listeria monocytogenes FSL N3-165] gi|258608877|gb|EEW21485.1| parE [Listeria monocytogenes F6900] gi|284057233|gb|ADB68174.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578] gi|284060280|gb|ADB71219.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923] gi|293589923|gb|EFF98257.1| DNA topoisomerase IV [Listeria monocytogenes J2818] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HEDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633 >gi|300088450|ref|YP_003758972.1| DNA gyrase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528183|gb|ADJ26651.1| DNA gyrase, B subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 641 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 251/654 (38%), Positives = 365/654 (55%), Gaps = 24/654 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + +Y A I++L G E VR RPGMYIG TD + LHHL EV+ N++DE +AG+ + Sbjct: 7 TDNPGASSYTAEDIQVLGGREAVRKRPGMYIGSTDYRGLHHLVYEVVYNSVDESMAGFCD 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V + G+ ++V DNGRGIPV+ K S LE ++T LHAG KF TY++SGGLH Sbjct: 67 KINVIIHGDESISVEDNGRGIPVDIQKK-TGVSALETVMTVLHAGAKFGGKTYQVSGGLH 125 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS+ + V V R ++ Q++ GIP +P+ + T TF+ D KI Sbjct: 126 GVGASVVNALSEWVTVDVRRDGKLYRQQYKEGIPEAPVAVVGEACGTG-TTTTFKFDSKI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D +D L + + AYL+ ++ + + E + +YF GG+ +++ Sbjct: 185 FDDAT-YDFKTLAERMREIAYLNKGLEISITDRRTDKE-------QTYYFEGGITGFVRH 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 NR+ I + VE A+ + + S+ N I T +GGTH +G Sbjct: 237 LNHNRNTIHRLPIAIYRKVDD---CMVEVALQYNDGFSETNFSFANCINTQDGGTHLTGF 293 Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I Y + + DD V I+SV + EP+F GQTK KL + + Sbjct: 294 RSALTRVINDYVYKNKLVKDSDPSIMGDDCREGMVSIVSVKLPEPQFEGQTKGKLGNAEM 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + D Y ++P EA K+++ V+ + R RK R+ + +K ++ LPG Sbjct: 354 KSMVESVVVDQLALYFEEHPDEAKKIIDKVLTSARARDAARKARDLIIKKNSLDGGSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+CS+ ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILNV A +K+ +++ Sbjct: 414 KLAECSEKEPSLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKAAPDKMLSHE 473 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ ALG + LRY +V++MTDADVDG+HI +LLLTFF++ M LI Sbjct: 474 EIRAIITALGAGIDDDFDFGKLRYHRVVMMTDADVDGSHIRTLLLTFFFRHMSKLITNGG 533 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L++ PPL+R+ QG + + K + L+EFK +++ R+KGLGEM A QL T Sbjct: 534 LYIAQPPLYRVKQGQNERWVFSDAEKDEALKEFKG---KSVDVQRYKGLGEMSAEQLWST 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ RT+L VEI + N LMG + R FIQ A + ++ Sbjct: 591 TMNPATRTMLTVEIED----AAHADATFNLLMGDQVPPRKAFIQAHAQQVKNLD 640 >gi|260437351|ref|ZP_05791167.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] gi|292810263|gb|EFF69468.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] Length = 641 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 351/658 (53%), Gaps = 28/658 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ YDASSI ILEGLE VR RPGMYIG K L+HL E+ DN++DE +AGY + Sbjct: 2 ATKVNNVYDASSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIADNSVDEHLAGYCDT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L+ +G T+ DNGRGIP HPK +E++ T LHAGGKF + Y+ISGGLHG Sbjct: 62 IYVTLNNDGTATITDNGRGIPTGIHPKA-GIPAVEVVFTVLHAGGKFGDGGYKISGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG SVVNALS+ L V + + ++ Q++ RG + L + +N GT +TF PD I Sbjct: 121 VGASVVNALSEWLEVRIKQGGIVYEQRYERGKAVYKLRECGTCRKNDTGTSVTFLPDNTI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F A + AYL+ + + ++ EK F+ G+ Y++ Sbjct: 181 FEK-TEFKAESIENRLHETAYLNPGLTIVFENARKGEEKKVT-----FHEEEGITAYVKA 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 EN+ + + K + G VE A + +E +I +CN I T EGGTH +G Sbjct: 235 LNENKEAVHDVAYY-KGSRDGI---EVECAFQYVDEFQEQILGFCNNIYTAEGGTHLTGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + T I KYA ++ ++ D+ I++V EP F GQTKTKL + DA Sbjct: 291 KTQFTTVINKYARELGILKEKDVNFTGSDVRNGMTAIVAVKHPEPRFEGQTKTKLDNQDA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V + + +N ++ + ++ R + K + GK Sbjct: 351 GKVVADITAAELVRFFDRNLETLKSVIACAEKAAKIRKQEEKAKTNLLTKQKFSCDTNGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N + Sbjct: 411 LANCESRNPEECEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKASMDKVLANAE 470 Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ A GC + + LRY K+I MTDADVDGAHI +LLLTFFY+ M DLI Sbjct: 471 IKTMITAFGCGFSEGYGNDFDISKLRYNKIIFMTDADVDGAHIDTLLLTFFYRFMPDLIR 530 Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 + H++L +PPL+++ + + Y +D++ +K +E H + R+KGLGEM A Q Sbjct: 531 EGHIYLATPPLYKVVPKKGQGRYLYDDKALEKYRKE---HEGSSFTLQRYKGLGEMDADQ 587 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L ET ++ R L ++EI K D + LMGT R +FI A + + Sbjct: 588 LWETTLNPETRILKQIEIED----AKMASDITSMLMGTDVPPRREFIHTHAHDAE-LD 640 >gi|16800393|ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria innocua Clip11262] gi|16413798|emb|CAC96556.1| parE [Listeria innocua Clip11262] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 360/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVV-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDAAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633 >gi|297564812|ref|YP_003683784.1| DNA gyrase subunit B [Meiothermus silvanus DSM 9946] gi|296849261|gb|ADH62276.1| DNA gyrase, B subunit [Meiothermus silvanus DSM 9946] Length = 645 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 265/661 (40%), Positives = 366/661 (55%), Gaps = 30/661 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + YDAS+I++L+GLE VR RP MYIGGT HHLF E++DN++DE +AGYA Sbjct: 2 STDLAAQYDASAIKVLKGLEGVRHRPAMYIGGTQADGYHHLFKEILDNSVDEALAGYATE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I +L +G +TV DNGRGIPV+ P+ K +EII T LHAGGKF+ Y++SGGLHG Sbjct: 62 IITTLHPDGSITVEDNGRGIPVDIMPE-EGKPAVEIIYTVLHAGGKFEEGAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNAL++ V V R + +FSRG PL + + KRGTR+TF PD IF Sbjct: 121 VGASVVNALAEYTRVEVFRDGKHYLIEFSRGEVTKPLTQIGTAKGKRGTRVTFLPDATIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F+A+R+ + ++L ++ + + E E F+ GG+ ++ + Sbjct: 181 DPGLKFEASRIRNRLREVSFLVAGLRLVFKDEVHQKE-------EVFFDKGGVASFAKFL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLR 335 E + + + E +VE + + SY N I T +GGTH SG + Sbjct: 234 AEGEEALYEKPVLLQGEVDVV---SVEVGLIHTKGYSNQLVSYANMIPTKDGGTHISGFK 290 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A TR I YA+ K + DDL+ ++SV I +P+F GQTK KL++ +A Sbjct: 291 TAYTRAINAYAKKAGLVKGDLEPTGDDLLEGVSCVISVKIPQPQFEGQTKGKLLNPEAGT 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + +L +NP A + E ++ R RK RE V RK A+ LPGKL Sbjct: 351 AVSKVVYEKLTDWLEENPRAAKLIYEKAQRAAQAREAARKARELVRRKDALESDELPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ Sbjct: 411 ADCQSEDPAEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLGKALKNAEV 470 Query: 514 MDLVQALGCRTRS-----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +V A+G S + EDLRY K+IIMTDADVDG+HI +LLLTFFY+ M ++E Sbjct: 471 RAMVAAIGAGIDSNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILE 530 Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L++ PPL+R+ G K Y ++E ++ + + + + E+ RFKGLGEM Sbjct: 531 GGYLYIAQPPLYRLQVGGGKNAKVQYLFNDEALKEAIAKLPE--RTSYEVQRFKGLGEMN 588 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET MD KR L +V + L + LMG R +FI+E A F + Sbjct: 589 PEQLWETTMDPAKRVLKQVTMEDALY----ANEIFEALMGQDVAPRREFIEENARFA-QL 643 Query: 685 G 685 Sbjct: 644 D 644 >gi|116627477|ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9] gi|116100754|gb|ABJ65900.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9] gi|312277994|gb|ADQ62651.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus ND03] Length = 649 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 233/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ I+ ++ +++ + + I S+ N + T +GGTHE+G + A+T Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537 Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G YA + +++ ++F + + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|302531361|ref|ZP_07283703.1| DNA gyrase, B subunit [Streptomyces sp. AA4] gi|302440256|gb|EFL12072.1| DNA gyrase, B subunit [Streptomyces sp. AA4] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 252/664 (37%), Positives = 372/664 (56%), Gaps = 27/664 (4%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA + Sbjct: 2 TENKSEYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGYATKV 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L +G + VVD+GRGIPV+ HPK K TLE++LT LHAGGKFD+ +Y +SGGLHGV Sbjct: 62 EVTLLADGGVRVVDDGRGIPVDIHPK-EKKPTLEVVLTILHAGGKFDSDSYAVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS +L + + Q++ +P PLE + GT ITF D IF Sbjct: 121 GVSVVNALSTKLLAEIKVGGRSWRQEYLNQVP-GPLEDLGPATD-TGTTITFWADGDIFE 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------EKEEFYFPGGL 269 ++ + + Q A+L+ + ++ E+ ++ + +PGGL Sbjct: 179 T-TTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAAGKQARVKEVVYCYPGGL 237 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 + +++ ++ I + + + G VE A+ W P + ++ NTI T EGG Sbjct: 238 EDFVKHINGSKDPIHESVISFDAKGSG---LEVEVAMQWNTGFTPSVYTFANTINTHEGG 294 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE G R ALTR + YA + ++ ++ DD+ I+S+ + EP+F GQTKTK Sbjct: 295 THEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQFEGQTKTK 354 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + +A+ V+ + + +NP EA ++ I ++ RL RK R+ V RK A+ Sbjct: 355 LGNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARLAARKARDLVRRKGALE 414 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKL DC N EL+IVEGDSAGGSAK+ R+ QA+LP+RGKI+NV A + Sbjct: 415 IGGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 474 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ N ++ L+ ALG + LRY K+++M DADVDG HI +LLLT ++ M Sbjct: 475 RVLKNTEVQSLITALGTGIHDDFDISKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534 Query: 566 LIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLG 621 LIE H+FL PPL++I + YA+ ++ + +++ + G+ + I R+KGLG Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRSEPEYAYSDKERDAVIQAGVEAGRRLPKDDAIQRYKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A +L ET MD R L +V ++ + + LMG + R FI A + Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKDV 650 Query: 682 DDVG 685 + Sbjct: 651 RFLD 654 >gi|222153162|ref|YP_002562339.1| DNA topoisomerase IV subunit B [Streptococcus uberis 0140J] gi|222113975|emb|CAR42259.1| topoisomerase IV subunit B [Streptococcus uberis 0140J] Length = 650 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 369/652 (56%), Gaps = 34/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V+++ Sbjct: 10 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIKVTIN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDGSVSVADSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKA 220 NALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD IF Sbjct: 128 NALSKWLEVEITRDGSVYKQRFEDGGKPVTTLKKIGTAAKSKTGTTVTFMPDDSIFST-T 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L V+ + + P+ EEF++ G++ +++ E++ Sbjct: 187 DFKFNTIAERLKESAFLLKDVRMSLTDLR-----GEEPQVEEFHYENGVQDFVEYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ + E V+ A+ + + + S+ N + T +GG+HE+GL+ A+T Sbjct: 242 ETLTPV-IYIEGED---QDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452 V+ + + +L++N AT L+ I+ + R RK R+ +R K K L GK Sbjct: 358 VDGIVSEKLTFFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +V +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E+ H+ Sbjct: 478 INTMVHTIGAGVGADFAIDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHV 537 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++ +G K YA + + +EF K + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMAKGKGKTEKVAYAWTDGELDDLRKEFGKGAM----LQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 WETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|42518089|ref|NP_964019.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533] gi|41582373|gb|AAS07985.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 248/669 (37%), Positives = 373/669 (55%), Gaps = 20/669 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+I Sbjct: 2 AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGK Sbjct: 62 DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 F Y++SGGLHGVG SVVNALS +L VTV R ++ F G + +++ V Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 EHGTIVRFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++F GG+K Y+ + + ++ E + +G VE A+ + + ++ N Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 I T EGG HE+G + ALTR + YA + + ++ +D+ I+SV P+ Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAIVSVKHPNPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437 F GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKIL Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+ Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPIVQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L RV +D + LMG + R +FI++ Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 678 ASFIDDVGT 686 A +++++ Sbjct: 647 AKYVENLDA 655 >gi|227889153|ref|ZP_04006958.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|268318566|ref|YP_003292222.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785] gi|227850382|gb|EEJ60468.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|262396941|emb|CAX65955.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+I Sbjct: 2 AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGK Sbjct: 62 DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 F Y++SGGLHGVG SVVNALS +L VTV R ++ F G + +++ V Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLE 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++F GG+K Y+ + + ++ E + +G VE A+ + + ++ N Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+ Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437 F GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKIL Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+ Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L RV +D + LMG + R +FI++ Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 678 ASFIDDVGT 686 A +++++ Sbjct: 647 AKYVENLDA 655 >gi|116872719|ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741597|emb|CAK20721.1| DNA topoisomerase IV, B subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 655 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPTIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SFNYETLSERLRESAFLLKGMLIQLVDER-------VGMAESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633 >gi|319401357|gb|EFV89568.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis FRI909] Length = 666 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638 >gi|229829522|ref|ZP_04455591.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM 14600] gi|229791953|gb|EEP28067.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM 14600] Length = 642 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 371/655 (56%), Gaps = 19/655 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + A Y A I+ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY Sbjct: 1 MEEEMAQQEYGADQIQILEGLEAVRKRPGMYIGSTSAQGLHHLVYEIVDNSVDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ +TVVD+GRGIP + K +E++ T LHAGGKF Y++SGGL Sbjct: 61 HHIRVTINRGNSVTVVDDGRGIPTGINHKA-GIPAVEVVFTILHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG SVVNALS L V + R I+ Q++ RG + L+ ++ GT++TF PD Sbjct: 120 HGVGASVVNALSLWLEVEIRRDGKIWRQRYERGKTMGSLKVVGSCDPSETGTKVTFLPDD 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF FD L + + A+L+ ++ E+ ++ FY+ GG+K ++ Sbjct: 180 RIFETT-EFDYGVLRRRLRETAFLTKGLRISLR-----DEREEEVREDSFYYEGGIKEFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++ + G + VE A+ + S+ N I+T EGGT + Sbjct: 234 SYLNRGDKPLYRDVIYCEGTSNGVY---VEVAMQHNDAYKEACYSFVNNIITPEGGTQVT 290 Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G + A+T YA + K + SDD+ ++S+ I +P+F GQTK KL + + Sbjct: 291 GFKAAVTNVFNSYAHENKLIKDTEKLDSDDIREGLTSVISIKIEDPQFEGQTKQKLGNSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 A+ V+ + + ++L QNP A ++E + + R+ + RK+ + LP Sbjct: 351 ARGAVQAVVTEQLTYFLEQNPQAARLIVEKSQLAQRAREAARKARDLTRRKSPLDGAALP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+FIVEGDSAGGSAK+ARNR QA+LPLRGKILNV A ++I N Sbjct: 411 GKLADCSSKDPAECEIFIVEGDSAGGSAKEARNRRTQAILPLRGKILNVEKAREDRIYGN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ E LRY K+IIMTDADVDGAHIA+L+LTF Y+ M +LI Q Sbjct: 471 AEIKAMITAFGTGIHDEFDIEKLRYHKIIIMTDADVDGAHIATLMLTFLYRFMPELIRQG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++L +PPL++I + K YA+ +E + IL + I+I R+KGLGEM A QL E Sbjct: 531 NVYLATPPLYKIEKNRKEWYAYSDEEQNNILNRIGRDN--SIKIQRYKGLGEMDAQQLWE 588 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + R L RV++ D + + + LMG + + R +FI+E A + + Sbjct: 589 TTMDPDTRILKRVQVIDD--DEAEINLTFSTLMGEEVEPRREFIEENAKYAT-LD 640 >gi|237784642|ref|YP_002905347.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385] gi|237757554|gb|ACR16804.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385] Length = 682 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 252/692 (36%), Positives = 372/692 (53%), Gaps = 50/692 (7%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + A + +YDASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 2 AENAAENNTRHDYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA ++V++ +G + VVD+GRGIPV HP T+++++T LHAGGKFDN +Y +S Sbjct: 62 GYATHVDVTIMKDGGIEVVDDGRGIPVSMHP--SGAPTVQVVMTQLHAGGKFDNDSYAVS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + + R + Q F+ IP + K GT I F P Sbjct: 120 GGLHGVGISVVNALSTRVEAEIKRDGYRWYQNFTDAIPDEL--VQGKKARGTGTTIRFWP 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------- 258 DP +F F + + Q A+L+ + + + A + Sbjct: 178 DPDVFET-TEFKFETIARRLQEMAFLNKGLYITLTDKRSQATETPEDADDTVEEAAAAKS 236 Query: 259 -----------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 E F++P GLK Y+ + + ++ I I T + Sbjct: 237 AEEAAADAEQKAKKSKERTETFHYPDGLKDYVASINKTKTAIHPTIITFDAKGD---EHE 293 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 VE A+ W + ++ NTI T EGGTHE G R ALT + +YA + + ++ Sbjct: 294 VEVALQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALTSLMNRYAREHKLLKDKEPNLS 353 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD ++SV + +P+F GQTKTKL + + + V+ + + H+ NP EA + Sbjct: 354 GDDCREGLAAVISVRVADPQFEGQTKTKLGNTEVKSFVQKQVFENVSHWFESNPAEAKII 413 Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + + S+ R+ RK R+ V RK+A LPGKLADC +EL+IVEGDSAGGS Sbjct: 414 VNKAVSSSQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPTLSELYIVEGDSAGGS 473 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AK R+ QA+LPLRGKILNV A +++ N ++ ++ ALG ++ + LRY K Sbjct: 474 AKSGRDSMYQAILPLRGKILNVEKARLDRVLKNNEVQAIITALGTGIHDEFDIKKLRYHK 533 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596 +I+M DADVDG+HIA+LLLT ++ M L+E+ H++L PPL+++ G + +A+ + Sbjct: 534 IILMADADVDGSHIATLLLTLLFRFMRPLVEEGHVYLAQPPLYKLKWGKGAPGFAYSDVE 593 Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + ++L E + G+ + I R+KGLGEM +L ET MD + R L +V++ Sbjct: 594 RDELLAEGLEQGRKINKDDGIQRYKGLGEMNPKELWETTMDPSIRILRQVQLED----AA 649 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 650 KADEIFSVLMGDDVIARRSFITRNAKDVRFLD 681 >gi|323339872|ref|ZP_08080141.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis ATCC 25644] gi|323092745|gb|EFZ35348.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis ATCC 25644] Length = 678 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 363/654 (55%), Gaps = 35/654 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++NY SI++L+GLE VR RPGMYIG TD K LHHL E++DNA+DE ++G+ I+V Sbjct: 2 GTENYSDDSIQVLKGLEAVRKRPGMYIGSTDAKGLHHLVYEIVDNAVDEALSGFGKEIDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TVVDNGRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIHKDDSITVVDNGRGLPVGIH--AMGIPTVEVIYTVLHAGGKFGQGGYKTSGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS++L V R + + F G P+ L K K + + GT +TF+PD KIF Sbjct: 120 SVVNALSEKLTVNTVRDGIEYEEDFVDGGHPVGTLRKIGKTKKQSGTTVTFKPDKKIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + + A+L VK + ++ +++ F F G++ ++ E Sbjct: 180 TH-FNYDTLAERLRESAFLLKGVKIVLTDER-------NDDQDVFLFENGIQEFVSYLNE 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + + + + +K G VE A + + I S+ N + T +GGTHE G++ A Sbjct: 232 EKDTLGNVM-YFEGKKDGI---EVEVAAQYNDGYSETIMSFVNNVRTKDGGTHEVGMKSA 287 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + ++ D+ ++SV I E +F GQTK KL + +A+ Sbjct: 288 WTKAFNEYARKVDLIKSKDKNLEGSDVREGLACVVSVRIPEELLQFEGQTKGKLGTPEAR 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 V+ + + +YL++N A +L+ ++ E R RK R+ +R R + L Sbjct: 348 TAVDGIVNEQLGYYLMENGDFAKELVRKSLKAREAREAARKARDESRNGKKRHKKERLLS 407 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 408 GKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKN 467 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M +I Sbjct: 468 EEINTMIYTIGAGVGTEFNIEDANYDKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAG 527 Query: 571 HLFLISPPLFRITQGTKSV----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+++ + K YA + + +E K + RFKGLGEM A Sbjct: 528 RVYIALPPLYKLQKTVKKKTVVKYAWTDAELKTSEKEIGK----GFTLQRFKGLGEMNAD 583 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV+I D + ++ LMG + + R K+I++ F Sbjct: 584 QLWETTMNPETRTLVRVKIEDD----ALAEKRVSTLMGDRVEPRRKWIEKNVKF 633 >gi|73662713|ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495228|dbj|BAE18549.1| topoisomerase IV subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 666 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 240/654 (36%), Positives = 366/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ G+ + I+ Sbjct: 4 NKKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGFGSEIQ 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +T+ DNGRG+P H K T+++I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDESITIEDNGRGMPTGIH--TSGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F++G + K K GT++TF+PDP+IF Sbjct: 122 ASVVNALSEWLEVEIYRDGNIYTQSFAQGGKPTTGLVKHGKTKKTGTKVTFKPDPEIFKS 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L R+K + E+ + F++ G+K ++ E Sbjct: 182 ATSFNYDVLSERLQESAFLLKRLKITLKDLRAGKERE-----DVFHYEDGIKEFVAYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVA 337 + ++ E VE A + ++ E I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLHDVAD-FSGEANNI---EVEVAFQYNDQYSEGILSFVNNVRTKDGGTHEVGFKSA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA ++ ++ +D+ I+S+ I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIISIRIPEELLQFEGQTKSKLGTPEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + D +YL + + L++ ++ + R RK RE R K L Sbjct: 353 SAVDSVVADKLPYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A + I N Sbjct: 413 GKLTPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G ++++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L+E Sbjct: 473 EEINTIIHTIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAG 532 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E +K+ ++ K + R+KGLGEM A Sbjct: 533 RVFIALPPLYKLEKGKGASRKIEYAWTDEELEKLQKKLGK----GFSLQRYKGLGEMNAD 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV++ +L S K + LMG K R ++I+ F Sbjct: 589 QLWETTMNPDTRTLIRVQVEDELRSSKR----VTTLMGDKVAPRREWIENHVEF 638 >gi|194467941|ref|ZP_03073927.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23] gi|194452794|gb|EDX41692.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23] Length = 669 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 363/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I V+++ Sbjct: 8 YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF + Y+ SGGLHGVG SVV Sbjct: 68 DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + + F G P+ L+K K + + GT ++F+PDPKIF Sbjct: 126 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + EK ++ F F G++ ++ E + Sbjct: 185 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 ++ ++ G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 240 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G YA E K+ ++ K ++ RFKGLGEM A QL Sbjct: 536 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL++V I + + + LMG K + R ++I+E F Sbjct: 592 ETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638 >gi|300362674|ref|ZP_07058850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] gi|300353665|gb|EFJ69537.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] Length = 655 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+I Sbjct: 2 AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGK Sbjct: 62 DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 F Y++SGGLHGVG SVVNALS +L VTV R ++ F G + +++ V Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLE 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++F GG+K Y+ + + ++ E + +G VE A+ + + ++ N Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+ Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437 F GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKIL Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+ Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L RV +D + LMG + R +FI++ Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 678 ASFIDDVGT 686 A +++++ Sbjct: 647 AKYVENLDA 655 >gi|116628688|ref|YP_813860.1| DNA gyrase, B subunit [Lactobacillus gasseri ATCC 33323] gi|238853343|ref|ZP_04643723.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4] gi|282852320|ref|ZP_06261662.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1] gi|311111572|ref|ZP_07712969.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22] gi|116094270|gb|ABJ59422.1| DNA gyrase subunit B [Lactobacillus gasseri ATCC 33323] gi|238834031|gb|EEQ26288.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4] gi|282556062|gb|EFB61682.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1] gi|311066726|gb|EFQ47066.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22] Length = 655 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 20/669 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + + A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+I Sbjct: 2 AEDKSKAALNKAKDFEKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGK Sbjct: 62 DNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-N 201 F Y++SGGLHGVG SVVNALS +L VTV R ++ F G + +++ V Sbjct: 121 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLE 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKES-----AETD 235 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 ++F GG+K Y+ + + ++ E + +G VE A+ + + ++ N Sbjct: 236 VYHFEGGIKEYVAFLNKGQEVLFDEPIYVEGNYEGI---DVEVALQYTNGYKTTLMTFAN 292 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+ Sbjct: 293 NIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQRE 437 F GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 FEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREV 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKIL Sbjct: 413 TRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKIL 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 NVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+ Sbjct: 533 LFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPS--PKPVVQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET M+ R L RV +D + LMG + R +FI++ Sbjct: 591 KGLGEMDPEQLWETTMNPENRRLDRVSPEY----AEDADKVFDLLMGNEVGPRREFIEKN 646 Query: 678 ASFIDDVGT 686 A +++++ Sbjct: 647 AKYVENLDA 655 >gi|296876169|ref|ZP_06900223.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] gi|296432880|gb|EFH18673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] Length = 649 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 250/658 (37%), Positives = 379/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + ++ + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS L V V + +I+ Q++ RG + L+ + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFIP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + +D +L K Q A+L+ ++ + +E E +++ +++ GG+ + Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y++ EN+ +I + E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVEYINENKDVIFEKPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR + YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447 + + + D F +L++NP A K++E ++ +R + +K+ + Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y E LE + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644 >gi|32448028|gb|AAO16800.1| ParE [Streptococcus mitis] Length = 647 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 365/653 (55%), Gaps = 36/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G LTV D+GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSLTVQDHGRGMPTGMH--AMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R I+ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDATIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + A+L V + + E EF++ G++ ++ E+ Sbjct: 186 TDFKYNTISERLNESAFLLKNVTLSLTDKR-------TDEAIEFHYENGVQDFVSYLNED 238 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + E G VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 239 KETLTPV-LYFEGEDNG---FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 294 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 295 TKVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARP 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D +L+++ A+ L+ I+ + R RK R+ +R K K L G Sbjct: 355 VVDGIVADKLTFFLMEDGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A A I N+ Sbjct: 415 KLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNE 474 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 475 EINTMIYTIGAGVGADFSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++ K + R+KGLGEM A Q Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGK----GATLQRYKGLGEMNADQ 590 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I +L + +N LMG K + R K+I++ F Sbjct: 591 LWETTMNPETRTLIRVTIE----NLARAERRVNVLMGDKVEPRRKWIEDNVKF 639 >gi|223043196|ref|ZP_03613243.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14] gi|222443407|gb|EEE49505.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14] Length = 666 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 236/654 (36%), Positives = 357/654 (54%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINQDDSISIEDNGRGMPTGIH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K+ K GT++TF+PDP+IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTFKPDPEIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 182 TTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERE-----EVYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ + VE A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLHDVTTFSGL----ANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA ++ +K+ ++ K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 638 >gi|31544928|ref|NP_853506.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)] gi|33860162|sp|P47720|GYRB_MYCGA RecName: Full=DNA gyrase subunit B gi|31541775|gb|AAP57074.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)] gi|284931006|gb|ADC30945.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(high)] Length = 648 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 255/660 (38%), Positives = 376/660 (56%), Gaps = 25/660 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N + D Y + SI++LEGL VR RPGMYIG TD+K LHH+ E+IDN++DE++AGY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++++L N + V D+GRGIPV+ H K NKST+E +LT LHAGGKFD+ TY +SGGLHG Sbjct: 62 VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS V V R I +F G +PL PLE K+GTRI F PD I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDSKKQGTRIQFVPDFSI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 +D + + A+L+ +K ++ ++ + + + GG+K Y++ Sbjct: 181 MEQF-EYDETIIADRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327 ++ I +I G+ + K T +E A + S+CN I T++G Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + AL + I +YA + + I +DL I+S+ EP++ GQTK Sbjct: 295 GTHEEGFKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKD 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L + + + + + + + + ++NP EA K+ + R R E RK+ Sbjct: 355 RLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFE 414 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC+ +EL+IVEGDSAGGSAK R+R QA+LPLRGK+LNV A E Sbjct: 415 SASLPGKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHE 474 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 KI N++I L+ A+G ++ + +RY K+IIMTDADVDGAHI LLLTFF++ M+ Sbjct: 475 KIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFP 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE+ H+++ PPL+R++ ++ Y + + ++ + + + E+ R+KGLGEM Sbjct: 535 LIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDD 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KRTLL+V IN + + + LMG + R FI++ A + ++ Sbjct: 592 VQLWETTMDPEKRTLLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647 >gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis] Length = 737 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 247/671 (36%), Positives = 387/671 (57%), Gaps = 23/671 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + + ++ A+ +YDA I++LEGL+PVR RPGMYIG T + LHHL EV+DNA Sbjct: 78 TSSAVSTEPSSDSPAAKSYDAGQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEVLDNA 137 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE AG+A I+V + +G ++++D+GRGIP + HP +KS LE +LT LHAGGKF Sbjct: 138 IDEAQAGFATNIDVIIFLDGSVSIMDDGRGIPTDLHP-VTHKSALETVLTVLHAGGKFGG 196 Query: 146 ST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVR 200 + Y +SGGLHGVG+SVVNALS++L VTV R ++Q F+ G P++ E + + Sbjct: 197 ESSGYSVSGGLHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGKPVTELTSNEILGEFK 256 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 ++GTR+ F PD ++F FD ++ + A+L+ +VK + + AE E Sbjct: 257 FRQGTRVRFWPDKEVFTTTTEFDYNTIVGRARELAFLNPQVKITLKQENKDAENVTYNE- 315 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 +++ GGL Y+ +++ I I + + ++W + Y N Sbjct: 316 --YHYAGGLVEYVCWLNRDKTPILKPISFTREKDGVIVNVALQWCS--DAYTDTLLGYAN 371 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 +I T +GG+H G++ ALTR ++ ++ ++ + + GI+SV + +PE Sbjct: 372 SIRTSDGGSHMDGVKSALTRTFNNLGRKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPE 431 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKT+L + + +R V+ A+++ YL NP +L + + + +K RE Sbjct: 432 FEGQTKTRLGNPEVRRIVDQAVQEYLTEYLECNPGVLESILSKALNAYKAAMAAKKAREL 491 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 V RK+ +R LPGKLADCS + E+FIVEG+SAGGSAKQ R+R QA+LPLRGKIL Sbjct: 492 VRRKSVLRPSALPGKLADCSASDPREAEIFIVEGESAGGSAKQGRDRRFQAILPLRGKIL 551 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556 NV + N++I +L+ LG + + ++D LRY K+II+TDADVDGAHI +LLL Sbjct: 552 NVERKDEAAMYKNEEIQNLILGLGLGLKGEDFKKDALRYHKIIILTDADVDGAHIRTLLL 611 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ L E+ ++++ PPL+++ +G ++ Y DE+ +K+ + F + I R Sbjct: 612 TFFFRYQRALFEEGYIYVGVPPLYKVERGRQAHYCFDEDELKKLQKTFPSN--ASYNIQR 669 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM+ QL ET +D R L ++ + + + LMG + + R + I+ Sbjct: 670 FKGLGEMMPLQLWETTLDPATRKLKQLTVED----AAEANMVFSLLMGNRVEPRKELIEN 725 Query: 677 RASF--IDDVG 685 AS I+ + Sbjct: 726 SASKISIEKLD 736 >gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN] gi|282934238|ref|ZP_06339515.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN] gi|281301712|gb|EFA93979.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] Length = 651 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 251/654 (38%), Positives = 367/654 (56%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A I Sbjct: 13 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDECLAGFATKI 72 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ +G +TV D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 73 EVTVEEDGSVTVQDDGRGIPVDIQEK-TGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216 G SVVNALS ++ VTV R + F G L++ V + GT + F PDP IF Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGTIVHFYPDPDIF 191 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L K Q A+L+ +K ++ ++ + E + +++ GG+K Y+ Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSS-----AETDVYHYEGGIKEYVAFL 246 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + + + + G VE A+ + + ++ N I T EGG HE+G + Sbjct: 247 DKKEEKLFDTPVYVEGDYDGI---NVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFK 303 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++S+ P+F GQTKTKL + DA+ Sbjct: 304 TALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDAR 363 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ A + F +L++NP K++E + R+ ++ RE +K+ + LPGK Sbjct: 364 AAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGK 423 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 424 LADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 483 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + + RY K+IIMTDADVDGAHI +LLLT FY+ M +I+ ++ Sbjct: 484 IRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYV 543 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM A QL ET Sbjct: 544 YIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPS--PKPTVQRYKGLGEMSADQLWETT 601 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 MD R L RV D +D LMG + R FI + A +++++ Sbjct: 602 MDPENRRLDRV----DPAYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA 651 >gi|282863315|ref|ZP_06272374.1| DNA gyrase, B subunit [Streptomyces sp. ACTE] gi|282561650|gb|EFB67193.1| DNA gyrase, B subunit [Streptomyces sp. ACTE] Length = 689 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 252/686 (36%), Positives = 371/686 (54%), Gaps = 28/686 (4%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 E S A S +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL E Sbjct: 10 ADSGNPNENIPSTAGEQSEGSPSYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHAG Sbjct: 70 VVDNSVDEAMAGHADTIDVTILADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL + E Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLARHEATE 188 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 189 E-TGTTVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADS 246 Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +++ G+ +++ + + + + +VE A+ Sbjct: 247 AEAVEVPEEESTRTVTYHYEDGIVDFVKYLNSRKGDVIHQSVIDIESEDKERLLSVEIAM 306 Query: 307 AWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + E + S+ N I T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 307 QWNTQYSEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVR 366 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 487 NPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + ++ Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDIDHRVLGQVTLDD----AAQADDLF 662 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688 >gi|227543440|ref|ZP_03973489.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A] gi|300910107|ref|ZP_07127567.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri SD2112] gi|227186592|gb|EEI66663.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A] gi|300892755|gb|EFK86115.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri SD2112] Length = 674 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 363/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I V+++ Sbjct: 13 YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 72 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF + Y+ SGGLHGVG SVV Sbjct: 73 DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + + F G P+ L+K K + + GT ++F+PDPKIF Sbjct: 131 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + EK ++ F F G++ ++ E + Sbjct: 190 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFDNGIQEFVSYLNEGKD 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 ++ ++ G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 245 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 300 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 301 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 360 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 361 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 420 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 421 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 480 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 481 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 540 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G YA E K+ ++ K ++ RFKGLGEM A QL Sbjct: 541 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 596 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL++V I + + + LMG K + R ++I+E F Sbjct: 597 ETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643 >gi|289434570|ref|YP_003464442.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170814|emb|CBH27356.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 655 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y+ SI++LEGL+ VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VTV R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + + A+L + ++ E E F+F G+K +++ E + Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ D Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R K+I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRKWIEKHVEF 633 >gi|282881781|ref|ZP_06290439.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B] gi|281298391|gb|EFA90829.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B] Length = 639 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 259/648 (39%), Positives = 379/648 (58%), Gaps = 21/648 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA I++L+GLEPVR RPGMYIG T EK LHHL EV+DN++DE +AG + I++ + Sbjct: 8 YDAGDIQVLKGLEPVRKRPGMYIGSTGEKGLHHLVYEVVDNSIDEALAGICDHIKIVITK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 NG V DNG GIPVE HP+ KST+E +LT LHAGGKFDN Y++SGGLHGVG+SVVN Sbjct: 68 NGSCYVEDNGSGIPVEIHPQ-TGKSTVETVLTILHAGGKFDNKAYKVSGGLHGVGVSVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS L T+ R I+SQ+F RG +S L++ KV +N+ GT+I F PDP+IF F Sbjct: 127 ALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDPEIFDTV-EF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L K + A+L+ +K ++ ++ I + E +++ GG+K++++ + Sbjct: 186 SFDILSKRFREMAFLNKGIKIDFTDER-------INKNEIYHYEGGIKSFVEYINSKKKY 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + ++E AI + + E+ ++ N I T+EGG+H SG R A+T+ Sbjct: 239 -EPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + Y ++ ++ DD+ +LSV + P+F GQTK KL + + + V++ Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +L +NP + +LE + R R+ RE++R + LPGKL DCS Sbjct: 358 VSEKLSMFLEENPKTSKAILEKAVAARRARDAARRAREISRAKNNLDMTLPGKLFDCSDV 417 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + +E+F+VEG+SAGGSAK R+ QAVLPLRGKI+NV A K+ N+ +I ++ A Sbjct: 418 GSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMITA 477 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G ++ LRY K+IIMTDADVDGAHI +LLLTFF++ M LIE H+++ PL Sbjct: 478 FGTGYAGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQAPL 537 Query: 580 FRITQGTKS-VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 + + + +K Y H+EE L+ + I I R+KGLGEM QL ET M+ + R Sbjct: 538 YGLEKNSKILRYCHNEEELNLALKAHESE--KNINIKRYKGLGEMNYDQLWETTMNPDNR 595 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LLRV I +T D+ LMG + + R +FI E A + D + Sbjct: 596 LLLRVNIED----FDETDDTFQMLMGQEVEPRREFISENAQYADYIDA 639 >gi|55822558|ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus CNRZ1066] gi|55738543|gb|AAV62184.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus CNRZ1066] Length = 649 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 233/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKEPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ I+ ++ +++ + + I S+ N + T +GGTHE+G + A+T Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537 Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G YA + +++ ++F + + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|256374166|ref|YP_003097826.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827] gi|255918469|gb|ACU33980.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827] Length = 657 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 252/664 (37%), Positives = 376/664 (56%), Gaps = 27/664 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA+ + Sbjct: 3 AQKKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIQEVVDNSVDEAMAGYASKVV 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L NG + VVD+GRGIPV+ HP K TLE++LT LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLANGGVRVVDDGRGIPVDLHP-VEGKPTLEVVLTKLHAGGKFDSDSYAVSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + V V RQ ++Q+F P L++ GT ITF DP IF Sbjct: 122 ISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQRGVPTSE-TGTTITFWADPTIFET 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAEKYGIPEKEEFYFPGGL 269 ++ + + Q A+L+ + ++ + + F++PGGL Sbjct: 181 -TDYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAKVRERVFHYPGGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 + +++ R + ++ + + + VE A+ W P + ++ NTI T EGG Sbjct: 240 EDFVRHLNHTREAVHQKVVSFEAKGDD---LEVEVAMQWNTGYTPSVYTFANTINTHEGG 296 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE G R ALTR + +YA + ++ ++ DD+ I+SV ++EP+F GQTKTK Sbjct: 297 THEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKLKEPQFEGQTKTK 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + +A+ V+ + + + ++P EA ++ + S+ R+ RK RE V RK A+ Sbjct: 357 LGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARKARELVRRKGALD 416 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKL DC + E++IVEGDSAGGSAK+ R+ QA+LP+RGKI+NV A + Sbjct: 417 IGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 476 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ N ++ ++ A+G ++ LRY KV++M DADVDG HI +LLLT ++ M Sbjct: 477 RVLKNTEVQSIITAMGTGIHDEFDVSKLRYHKVVLMADADVDGQHIRTLLLTLLFRFMRP 536 Query: 566 LIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGK---GKIEISRFKGLG 621 L+E H++L PPL++I + YA+ + + ++E+ GK I R+KGLG Sbjct: 537 LLEHGHVYLAQPPLYKIKWLRAEPEYAYSDRERDGLIEQGLAAGKKIGKDDNIQRYKGLG 596 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A +L ET MD R LL+V ++ + + LMG + R FI A + Sbjct: 597 EMNAEELWETTMDPANRVLLQVTMDD----AAAADELFSVLMGEDVEARRSFITRNAKGV 652 Query: 682 DDVG 685 + Sbjct: 653 RFLD 656 >gi|224476482|ref|YP_002634088.1| DNA topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|222421089|emb|CAL27903.1| topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 666 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 239/656 (36%), Positives = 368/656 (56%), Gaps = 31/656 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + NY SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ G+ N Sbjct: 2 ATNKRQNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGFGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V+++ + +TV DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IKVTINKDDSITVEDNGRGMPTGIHK--SGKPTVEVIFTILHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V + R I+ QKF++G + +K+ K+GT++TF+P+P+IF Sbjct: 120 VGASVVNALSEWLDVEIYRDGYIYEQKFNKGGLPATGLEKKGKTRKKGTKVTFKPNPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F+ L + Q A+L +K + + E+ E +++ G+K ++ Sbjct: 180 KSTTAFNFDTLSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYV 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + ++ ++ T E G V+ A + ++ I S+ N + T +GGTHE G + Sbjct: 235 NEGKEVLH-DVSTFSGESHGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR YA + ++ +D+ I+SV I E +F GQTK+KL + + Sbjct: 291 TAMTRVFNDYARRIGELKAKDKNLEGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTAE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448 A+ V++ + + +YL + + L++ ++ + R RK RE R K Sbjct: 351 ARSAVDSVITEKLPYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTL 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A + I Sbjct: 411 LSGKLTPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIF 470 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G ++++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 KNEEINTIIHTIGAGVGNEFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQ 530 Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +F+ PPL+++ +G K YA +E +K+ ++ K + R+KGLGEM Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKKVEYAWTDEELEKLQKKLGK----GFSLQRYKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 587 PDQLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIERHVEF 638 >gi|55981555|ref|YP_144852.1| DNA gyrase subunit B [Thermus thermophilus HB8] gi|55772968|dbj|BAD71409.1| DNA gyrase, subunit B [Thermus thermophilus HB8] Length = 634 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 266/652 (40%), Positives = 368/652 (56%), Gaps = 29/652 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS+IR+L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I V L+ Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV DNGRGIPV+ P+ K +E+I TTLH+GGKF+ Y++SGGLHGVG SVV Sbjct: 62 EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ V V R+ FSRG PL + R K GTR+TF+PDP+IFG+ Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD +++ + AYL +K + + E E F GG+ ++ + E Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340 L+ + F + VE + EI +Y N I T +GGTH + + A +R Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ ++ DDL+ ++SV + P+F GQTK KL++ +A V Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + L +NP A + + + R+ + V R+ + LPGKLADC Sbjct: 350 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 409 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ +V Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469 Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 A+G + + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE+ H++ Sbjct: 470 SAIGVGIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ G K Y + +E Q L+E + E+ RFKGLGEM QL ET M Sbjct: 530 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKH---YEVQRFKGLGEMNPEQLWETTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + KR L RVE+ L + + KLMG + R +FI+E A + + + Sbjct: 587 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 633 >gi|229544207|ref|ZP_04433266.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1] gi|229325346|gb|EEN91022.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1] Length = 659 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 361/658 (54%), Gaps = 34/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY Sbjct: 1 MAKKQNILEYNDDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNAVDEALSGYG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I V++ + ++V D GRG+PV H K T E+ILT LHAGGKF Y+ SGGL Sbjct: 61 NHIIVNIHKDNSISVQDFGRGMPVGMHK--LGKPTTEVILTILHAGGKFGQGGYKTSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L VT+ R ++ Q+F G +K NK GT I F+PDP Sbjct: 119 HGVGASVVNALSEWLVVTIHRDGYVYEQRFRDGGKPETTLEKTGKTNKTGTTIHFKPDPS 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F+ L + + A+L +K + ++ + F++ G++ ++Q Sbjct: 179 IFSTIT-FNYDTLCERLRESAFLLKGLKIEITDER-------FGRHDLFHYENGIEAFVQ 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 E + ++ + + E G E+A + + I S+ N + T +GGTHE+G Sbjct: 231 YLNEGKEVLHPVV-FIEGETNGI---EAEFAFQFNDGFSENILSFVNNVRTKDGGTHEAG 286 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVS 389 + ALTR + YA T ++ ++ D+ I+SV I E +F GQTK KL + Sbjct: 287 AKTALTRVVNDYARKTGLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGT 346 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--- 446 +A+ V+ + + ++L +NP + L+ I+ S+ R RK RE R RK Sbjct: 347 SEARSAVDTIVSEHLSYFLEENPDTSNLLIRKAIKASQAREAARKAREEARSGKKRKKSE 406 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A Sbjct: 407 TTLSGKLTPAQSRNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLAD 466 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G ++ ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M L Sbjct: 467 IFKNEEINTIIYTIGAGVGPEFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPL 526 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 IE +++ PPL+++++GT YA E+ + +++ + + R+KGLGE Sbjct: 527 IEAGKVYIALPPLYKVSKGTGRKEIVEYAWTEKELDETIKKVGR----GYILQRYKGLGE 582 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET M+ RTL+RV I+ + + LMG K + R ++I+ F Sbjct: 583 MNADQLWETTMNPETRTLIRVRIDD----AARAERRVTTLMGDKVEPRRQWIESHVEF 636 >gi|313633453|gb|EFS00279.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL N1-067] Length = 655 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y+ SI++LEGL+ VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VTV R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + + A+L + ++ E E F+F G+K +++ E + Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RVFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ D Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R K+I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRKWIEKHVEF 633 >gi|157363918|ref|YP_001470685.1| DNA gyrase, B subunit [Thermotoga lettingae TMO] gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO] Length = 630 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 372/645 (57%), Gaps = 20/645 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SIRIL+GLE VR+RPGMYIG T + LHHL E++DN++DEV+AG+ N I V+L Sbjct: 3 DYKAESIRILKGLEAVRLRPGMYIGSTGKSGLHHLVYEIVDNSIDEVMAGFCNTIRVTLF 62 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIPV+ HP+ +S LE+++TTLHAGGKF + Y++SGGLHGVG SVV Sbjct: 63 EDNTVEIEDNGRGIPVDTHPE-TGRSALEVVMTTLHAGGKFSKNIYKVSGGLHGVGASVV 121 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V + ++ I+ QK+SRG P + + + GT + F+PD +IF F Sbjct: 122 NALSEILEVWIHKEGKIYYQKYSRGFPQCEVTVIGETDKQ-GTIVRFKPDDQIFS-ILKF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D + + A+L+ +VK + E ++ GGL+ Y + R Sbjct: 180 DPDLIENKLRELAFLNPQVKIIF-------EDLANEYTVTMHYEGGLREYARYLASGRKP 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 I I + + + + ++ E +I SY N I T + GTH + + T+ + Sbjct: 233 IHETIEVSGELDEIIVKIAIMYTDSYEE--EKIYSYANNIRTIDHGTHVTAFKNTFTKML 290 Query: 343 KKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +YA K+ S +D+ + I++V ++EPEF GQTK+KL S A V L+ Sbjct: 291 NEYARSLGILKKDESFSGEDVREGLIAIVTVLMKEPEFEGQTKSKLGSESAGIAVSRILK 350 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 + Y N +LE V++ R RK RE RK A+ L LPGKLADC + Sbjct: 351 EKLSEYFEVNKQVLKVILEKVLKTMRAREAARKARELARRKNAMENLSLPGKLADCVSSN 410 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV + +K+ N+QI D++ A+ Sbjct: 411 VENSELFIVEGDSAGGSAKQARDREYQAILPLRGKILNVEKSSMQKLLANEQIKDIIVAV 470 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + LRY K+IIMTDAD+DGAHI +LLLTFF++ M LIE +++ PPL+ Sbjct: 471 GTGIGDSFDSSKLRYGKIIIMTDADIDGAHIRTLLLTFFFRYMKPLIEDGRIYIAVPPLY 530 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 +++ + SVY + EE Q + E + K+E+ R+KGLGEM QL ET M+ R L Sbjct: 531 KVSFSSNSVYVYTEEDFQALRRELGEE--RKLEVQRYKGLGEMNPEQLWETTMNPETRKL 588 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++V I + ++ LMG ER +FI+ A + + Sbjct: 589 IQVNIE----NAEEADALFEILMGESPSERRRFIERHALKVTYLD 629 >gi|148271184|ref|YP_001220745.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829114|emb|CAN00011.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 681 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 255/693 (36%), Positives = 383/693 (55%), Gaps = 24/693 (3%) Query: 2 TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61 +D + DL P ++++ DS Q S++Y A+ I++LEGLE VR R Sbjct: 3 SDATQDLPDDSTP------DEVEVEETHNDSDHITRQQVSNDYGANEIQVLEGLEAVRKR 56 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIG T + LHHL SE++DN++DE +AG+A+ I++++ +G + VVD+GRGIPV+ H Sbjct: 57 PGMYIGSTGPRGLHHLVSEIVDNSVDEALAGFASDIQITMRKDGGIRVVDDGRGIPVDIH 116 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 P ST+E++LT LHAGGKF Y +SGGLHGVG SVVNALS+ L V V RQ ++ Sbjct: 117 P-VEGISTVELVLTKLHAGGKFGGGGYAVSGGLHGVGSSVVNALSERLDVEVRRQGAVWR 175 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 Q F+ G+P PL+K E GT ITF P +IF FD L Q A+L+ + Sbjct: 176 QSFTIGVPDEPLQKGEGSTE-TGTTITFWPSREIFET-VEFDYDTLRARFQQMAFLNKGL 233 Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRG 300 ++E+ E+F + GL Y++ ++ + E + + Sbjct: 234 ALTLHDEREVD--GAEHRTEKFLYERGLVDYVEHLVKAKKTEVVNADVIAFESEDTVKKI 291 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISI 357 ++E A+ W + +Y NTI T EGGTHE G R ALT + +YA + ++ ++ Sbjct: 292 SLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRAALTTLVNRYARENKLLREKDENL 351 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+ ++SV + EP+F GQTKTKL + +A+ V+ + +L +NP +A Sbjct: 352 TGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKAYVQRIVGQQLGDWLEKNPSQAKD 411 Query: 418 LLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 ++ ++ S+ RL RK RE R+ + +PGKL DC +E+F+VEGDSAGG Sbjct: 412 IIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKLKDCQSKDPALSEVFLVEGDSAGG 471 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SA Q RN + QA+LPLRGKILNV A ++ N ++ ++ A G + E +RY Sbjct: 472 SAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEVQSMITAFGAGIGEDFNAEKVRYH 531 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595 K+++M DADVDG HI +LLLT ++ M LIE +++L PPL+R+ + Y + + Sbjct: 532 KIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYVYLAQPPLYRLKWSNAEHQYVYTDA 591 Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + +L + GK + I R+KGLGEM +L ET MD RTL++V ++ Sbjct: 592 ERDALLVHGQAKGKKMPKDNGIQRYKGLGEMDYKELWETTMDPATRTLMQVTLDD----A 647 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FIQ A + + Sbjct: 648 AGADEVFSTLMGEDVESRRSFIQRNAKDVRFLD 680 >gi|226362903|ref|YP_002780683.1| DNA gyrase subunit B [Rhodococcus opacus B4] gi|226241390|dbj|BAH51738.1| DNA gyrase subunit B [Rhodococcus opacus B4] Length = 680 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 242/690 (35%), Positives = 367/690 (53%), Gaps = 47/690 (6%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + ++S +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE + Sbjct: 2 AAQKSDKSTSSKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYA+ +E++L +G + VVD+GRGIPV H T+E++LT LHAGGKFD+ +Y + Sbjct: 62 AGYASKVEITLLEDGGVQVVDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKFDSDSYAV 119 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVGISVVNALS L V + R ++Q ++ P ++ + + GT + F Sbjct: 120 SGGLHGVGISVVNALSTRLDVDIKRDGFRWNQTYTDSKPGELVK--GEATKETGTTVRFW 177 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------ 258 DP IF + + + Q A+L+ + + ++ + Sbjct: 178 ADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTA 236 Query: 259 ---------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + +++PGGL+ Y++ + I + + + G +E Sbjct: 237 EDESAEAGAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGH---ELE 293 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 A+ W + ++ NTI T EGGTHE G R ALT + KYA + ++ + D Sbjct: 294 IAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGD 353 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ I+SV + EP+F GQTKTKL + + + V+ A + H+ NP +A ++ Sbjct: 354 DIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVN 413 Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 + ++ R+ RK RE V RK+A LPGKLADC N +E++IVEGDSAGGSAK Sbjct: 414 KAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAK 473 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 R+ QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LRY K++ Sbjct: 474 SGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIV 533 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598 +M DADVDG HIA+LLLT ++ M L+E H++L PPL+++ +A+ + + Sbjct: 534 LMADADVDGQHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRADPEFAYSDRERD 593 Query: 599 KILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +++ E K I R+KGLGEM A +L ET MD R L V ++ Sbjct: 594 ALVKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD----AAAA 649 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI A + + Sbjct: 650 DELFSVLMGEDVEARRSFITRNAKDVRFLD 679 >gi|188582557|ref|YP_001926002.1| DNA topoisomerase IV subunit B [Methylobacterium populi BJ001] gi|179346055|gb|ACB81467.1| DNA topoisomerase IV, B subunit [Methylobacterium populi BJ001] Length = 647 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 386/651 (59%), Positives = 481/651 (73%), Gaps = 11/651 (1%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDAS+I +LEGLEPVR RPGMYIGGTDE+ALHHLF+EVIDN+MDE +AG+A+ IEV Sbjct: 2 AEAGYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ G L V DNGRGIPV+ HPKFP KS LE+I+TTLHAGGKFD+ YE SGGLHGVGI Sbjct: 62 ELEETGALVVTDNGRGIPVDPHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALSD L V VAR T++ Q FSRG PLE +V+N+RGTR+ F PD +IFG Sbjct: 122 SVVNALSDVLEVEVARNQTLYRQTFSRGHAQGPLETLGRVQNRRGTRVRFHPDAQIFGS- 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY-FPGGLKTYLQTKLE 278 FD RL KM +SKAYL G V+ W C + E E + FPGGL YL +E Sbjct: 181 LKFDPRRLFKMARSKAYLFGGVEIRWRCAPALLEGLEDVPAEAVHRFPGGLSDYLARDIE 240 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + L+ IF+GK K G+H G++EWA+AW ++ SYCNTI T EGGTHESGLRVA Sbjct: 241 GKELVLDAIFSGKVTKPGSH-GSLEWAVAWTVADDGVSHSYCNTIPTPEGGTHESGLRVA 299 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L R ++++AE KR S+ +DD++ + +LSVFIREPEF GQTK KL +++A R V Sbjct: 300 LLRALREHAERVNQAKRMTSVTTDDVLATCASMLSVFIREPEFQGQTKDKLATVEASRIV 359 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 E A+RD FDH+L +P +A KLL+WVI+R+EERLRRR+++EV RK+A RKLRLPGKLADC Sbjct: 360 ETAVRDAFDHWLAASPAQANKLLDWVIDRAEERLRRRQEKEVARKSATRKLRLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S G+E+FIVEGDSAGGSAKQAR+R+ QAVLPLRGKILNVASA +K+ NQ I DL Sbjct: 420 SAAGTAGSEIFIVEGDSAGGSAKQARDRATQAVLPLRGKILNVASASRDKLGANQLISDL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALGC T + +RE DLRY++VIIMTDADVDGAHIASLL+TFFY++M LI++ HL+L Sbjct: 480 TLALGCGTGANFREGDLRYDRVIIMTDADVDGAHIASLLITFFYRQMPKLIDKGHLYLAI 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI+QG KS YA D+ K++I++ K+G K+EI RFKGLGEM+ +QLKET MD Sbjct: 540 PPLYRISQGAKSAYARDDADKERIIKTVFKNG--KVEIGRFKGLGEMMPAQLKETTMDPK 597 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 KRTLLRV + + + T D++ +LMG K + RF FI ERA+F D ++ Sbjct: 598 KRTLLRVAVLD--EARESTGDTVERLMGNKPEARFAFITERAAFADGTELD 646 >gi|260904977|ref|ZP_05913299.1| DNA gyrase subunit B [Brevibacterium linens BL2] Length = 665 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 252/663 (38%), Positives = 364/663 (54%), Gaps = 28/663 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA I +LEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGY + IEV++ Sbjct: 9 YDAGDITVLEGLEAVRKRPGMYIGSTSERGLHHLVQEIVDNSVDEAMAGYCSHIEVTILA 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + VVD+GRG+PV HP K T+E+ILT LHAGGKF Y ++GGLHGVG +VVN Sbjct: 69 DGGVRVVDDGRGMPVAMHP-TEGKPTVEVILTILHAGGKFGGGGYAVAGGLHGVGSTVVN 127 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V V R ++ F +G+P L + + GT +TF PD IF F Sbjct: 128 ALSERLEVEVRRDGYFWNMNFEKGVPTGELTRGAETSE-TGTMVTFWPDSTIFET-TDFS 185 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK------------EIAEKYGIPEKEEFYFPGGLKT 271 L Q A+L+ +K + ++ E E P + +++ GL Sbjct: 186 YEYLRARFQQMAFLNKGMKISLTDERHVQVDDDNVQIDEDEETDAKPREATYHYEHGLLD 245 Query: 272 YLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+Q + E ++ ++E A+ W + +Y N I T EGGT Sbjct: 246 YVQYLNSTKKADLVHPDVIVFEAEEAEETLSLEIAMQWTTSYSESVHTYANVINTHEGGT 305 Query: 330 HESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE G R ALT I YA + ++ ++ DD+ ++SV + +P+F GQTKTKL Sbjct: 306 HEEGFRTALTSLINNYAREQKLLREKDANLTGDDIREGLTAVISVKLGDPQFEGQTKTKL 365 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 + + + V+ +RD H++ NP +A ++ ++ S+ RL RK RE R+ + Sbjct: 366 GNSEVKGFVQRVVRDELGHWMESNPAQAKDVVRKGLQASQARLAARKAREATRRKGLLES 425 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 +PGKL DC +E+FIVEGDSAGGSA Q RN + QA+LPLRGKILNV A ++ Sbjct: 426 SGMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILNVEKARLDR 485 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N ++ ++ A G ++ E LRY K+++M DADVDG HI +LLLT ++ M L Sbjct: 486 ALGNNEVQAMITAFGTGIGEEFDLEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPL 545 Query: 567 IEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGE 622 IE +++L +PPL+RI +A+ E+ +LE K GK + I R+KGLGE Sbjct: 546 IEHGYVYLATPPLYRIKWSNAPHEFAYTEKESDGLLEAGKAAGKRLPKDMAIQRYKGLGE 605 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M S+L ET MD + R L +V ++ + + LMG D R +FIQE A + Sbjct: 606 MNYSELWETTMDPDHRLLKQVSLDDGIV----ADEIFTVLMGDDVDSRRRFIQENAKDVR 661 Query: 683 DVG 685 + Sbjct: 662 FLD 664 >gi|111020663|ref|YP_703635.1| DNA gyrase subunit B [Rhodococcus jostii RHA1] gi|110820193|gb|ABG95477.1| DNA topoisomerase subunit B [Rhodococcus jostii RHA1] Length = 696 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 245/697 (35%), Positives = 370/697 (53%), Gaps = 47/697 (6%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 K+S + ++S +Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+D Sbjct: 11 KESYPPVAAQKSDKSTSSKDYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVD 70 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A +E++L +G + VVD+GRGIPV H T+E++LT LHAGGKF Sbjct: 71 NSVDEAMAGHATKVEITLLEDGGVRVVDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKF 128 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 D+ +Y +SGGLHGVGISVVNALS L V + R + Q ++ P ++ + + Sbjct: 129 DSDSYAVSGGLHGVGISVVNALSTRLDVDIKRDGFQWHQTYTDSKPGELVK--GEATKET 186 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-------------- 249 GT +TF DP IF + + + Q A+L+ + + ++ Sbjct: 187 GTTVTFWADPNIFETTV-YSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQV 245 Query: 250 -------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296 A + +++PGGL+ Y++ + I + + + G Sbjct: 246 ADAPKTAEDESAEAEAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTG 305 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 +E A+ W + ++ NTI T EGGTHE G R ALT + KYA + ++ Sbjct: 306 H---ELEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 + DD+ I+SV + EP+F GQTKTKL + + + V+ A + H+ NP Sbjct: 363 DPKLTGDDIREGLAAIISVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPA 422 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 +A ++ + ++ R+ RK RE V RK+A LPGKLADC N +E++IVEGD Sbjct: 423 DAKTIVNKAVSSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAK R+ QA+LPLRGKI+NV A +++ N ++ ++ A G ++ Sbjct: 483 SAGGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYA 591 LRY K+++M DADVDG HIA+LLLT ++ M L+E H++L PPL+++ + +A Sbjct: 543 LRYHKIVLMADADVDGQHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFA 602 Query: 592 HDEEHKQKILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + +++ E K I R+KGLGEM A +L ET MD R L V ++ Sbjct: 603 YSDRERDVLVKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI A + + Sbjct: 662 ---AAAADELFSVLMGEDVEARRSFITRNAKDVRFLD 695 >gi|322389902|ref|ZP_08063442.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 903] gi|321143338|gb|EFX38776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 903] Length = 649 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 251/658 (38%), Positives = 377/658 (57%), Gaps = 24/658 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + ++ + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +A Sbjct: 2 TEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+ IEV ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 62 GFASHIEVFIEADNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS L V V + +I Q++ RG + L+ + ++ GT + F P Sbjct: 121 GGLHGVGSSVVNALSTSLDVRVYKNGSIHYQEYRRGHVVDDLKIIGET-DRTGTTVHFIP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + +D +L K Q A+L+ ++ + +E E +++ +++ GG+ + Sbjct: 180 DPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLE-----QEKHYHYEGGISS 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 Y++ EN+ +I E TVE A+ + + S+ N I T EGGTH Sbjct: 235 YVEYINENKDVIFETPIYTDGEMDDI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 E G R ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 292 EQGFRTALTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLG 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKL 447 + + + D F +L++NP A K++E ++ +R + +K+ + Sbjct: 352 NSEVVKITNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEIS 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI Sbjct: 412 NLPGKLADCSSNNPEETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++ Sbjct: 472 LANEEIRSLFTAMGTGFGAEFDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVL 531 Query: 568 EQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGE 622 E ++++ PP++ + G++ Y E LE + G+ K I R+KGLGE Sbjct: 532 EAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEAELAAALERYS-EGRSKPTIQRYKGLGE 590 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 591 MDDHQLWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAEY 644 >gi|284010227|dbj|BAI66713.1| DNA gyrase B [Borrelia sp. Tick98M] Length = 625 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 234/639 (36%), Positives = 360/639 (56%), Gaps = 19/639 (2%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 +L+GLE VR RPGMYIG LHHL E+IDN++DE + G+ + IEV ++ + +TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVSINGLHHLVYELIDNSIDEALGGFCDKIEVIINSDNSITVS 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIP + H + S LE++LT LH+GGKF+ TY++SGGLHGVGISVVNALS L Sbjct: 61 DNGRGIPTDIHEE-EGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V V R +F Q FSRGI S ++ + + RGTR+TF D +IF + L + Sbjct: 120 VFVYRDGKVFRQTFSRGISTSEVDIVGESSS-RGTRVTFLADSEIFETL-EYSFETLSRR 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L+ +++ + +++ FY+ GG+K ++ N I S + Sbjct: 178 LRELAFLNDKLQISIEDRRLEEKRFLE-----FYYEGGIKAFVDYLTNNSKSIQSGPYFI 232 Query: 291 KT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + ++ ++W + + I S+ N I T +GGTH +G R L + + + + + Sbjct: 233 EGISEEVIVTVGLKWTEGY---SENILSFVNNIKTQDGGTHVAGFRSGLFKAMNEAYKRS 289 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + K ++ DD ++S+ + EP+F GQTK KL + ++ V+ D Sbjct: 290 KISKKDVPNLTLDDFKEGLTAVVSIKLPEPQFEGQTKGKLGNSYVKKIVDTITYDGLLKV 349 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 + NP+E + + I+ + R RK R +K+ L LPGKLADC+ E+ Sbjct: 350 VDDNPLEVEIIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCASKNPIEREI 409 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 +IVEGDSAGGSAK RNR QA+LPL GK+LNV +K+ N +++ ++ +LG Sbjct: 410 YIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGK 469 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 + E LRY KVIIM DADVDG+HI +LLLTFF++ M DLIE H+++ PPL+++ Sbjct: 470 TFCIERLRYHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN 529 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 + Y +D+ K+ LE + + K+ + R+KGLGEM +QL ET M+ + R + V I+ Sbjct: 530 RVHYFYDDLEKESFLESIESEKRDKVNLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGID 589 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R +FI++ A + ++ Sbjct: 590 DSM----QAERIFVTLMGDDVEPRREFIEQNALDVVNLD 624 >gi|162147271|ref|YP_001601732.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|161785848|emb|CAP55419.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5] Length = 678 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 350/686 (51%), Positives = 463/686 (67%), Gaps = 15/686 (2%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLFS P+ + G PA A YDAS+I +LEGLEPVR RPGM Sbjct: 2 NDDLFSAARPKREPRGR-----GAASAPPAPVRNDAGGEYDASAIEVLEGLEPVRRRPGM 56 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDE A HHL SE++DNAMDE +AG+A I+V+L+ +LT+ DNGRGIPV+ HPKF Sbjct: 57 YIGGTDEGAYHHLASEILDNAMDEAVAGHATTIDVTLEAGDWLTIRDNGRGIPVDPHPKF 116 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 ++S LE+ILTTLHAGGKF Y SGGLHGVG SVVNAL+ + V VAR ++ Q + Sbjct: 117 KDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALAARMEVEVARDRAVWRQVY 176 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 RG P++ LEK +N+RGT+I F PDP+IFG F ARL ++ +SKAYL V Sbjct: 177 ERGHPVTMLEKVGATQNRRGTQIRFTPDPQIFGRIH-FSPARLYRLCRSKAYLFRGVTIR 235 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300 WSCD + IP + +FPGGL L+ +L N + + +E+++G+ + G G Sbjct: 236 WSCDPALVRDADIPAEAVLHFPGGLADSLRDELGNAA-LLTEMWSGEADLPVGPDGADTG 294 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 +EWA+A+ E SYCNTI T +GGTHE+G R AL +G + + E NKRA ++ + Sbjct: 295 RMEWAVAFLESGSASLSSYCNTIPTPQGGTHEAGFRAALLKGFRAWGEQRSNKRAAAVNA 354 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD++ + LSVFIR+P+F GQTK KL S +A R +E ALRD F+ +L +P +A LL Sbjct: 355 DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSSEASRLIETALRDRFEQWLAGHPAQADNLL 414 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 ++IER+EERLRR+ ++ RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAK Sbjct: 415 AFIIERAEERLRRKDLKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 474 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC ++ LRY +++ Sbjct: 475 QARNRETQAVLPLRGKILNVASASTEKLRANQELRDLVEALGCGIGERFDATRLRYGRIV 534 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ DLI Q HL+L PPL+R+TQG K++YA D+ +++ Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPDLIRQGHLYLAQPPLYRLTQGGKTIYAMDDTDRER 594 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L+ K K+E+SRFKGLGEM LK+T MD RTLL+V T D + Sbjct: 595 KLKSNFK-PNAKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVV--TRPEDRALTSDRV 651 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + + RF+FIQE A ++D+ Sbjct: 652 EHLMGRRPELRFQFIQEHAQTVEDLD 677 >gi|46907513|ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria monocytogenes str. 4b F2365] gi|217964571|ref|YP_002350249.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23] gi|226223889|ref|YP_002757996.1| DNA gyrase-like protein (subunit B) [Listeria monocytogenes Clip81459] gi|254824653|ref|ZP_05229654.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194] gi|254852660|ref|ZP_05242008.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503] gi|254932397|ref|ZP_05265756.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262] gi|254993571|ref|ZP_05275761.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-064] gi|255520561|ref|ZP_05387798.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-175] gi|300765323|ref|ZP_07075307.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017] gi|46880781|gb|AAT04079.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes serotype 4b str. F2365] gi|217333841|gb|ACK39635.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23] gi|225876351|emb|CAS05060.1| Putative DNA gyrase-like protein (subunit B) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605977|gb|EEW18585.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503] gi|293583953|gb|EFF95985.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262] gi|293593891|gb|EFG01652.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194] gi|300514006|gb|EFK41069.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017] gi|307570865|emb|CAR84044.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes L99] gi|328468575|gb|EGF39575.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 1816] gi|328475129|gb|EGF45913.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 220] Length = 655 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HVDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633 >gi|313638149|gb|EFS03407.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL S4-171] Length = 655 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 238/652 (36%), Positives = 361/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y+ SI++LEGL+ VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NDYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R+ + Q+F G + KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINREGATYEQRFKNGGKPNGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + + A+L + ++ E E F+F G+K +++ E + Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDERVGME-------ESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RVFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ D Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R K+I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----TARAERRVATLMGDKVEPRRKWIEKHVEF 633 >gi|300934345|ref|ZP_07149601.1| DNA gyrase subunit B [Corynebacterium resistens DSM 45100] Length = 674 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 260/686 (37%), Positives = 373/686 (54%), Gaps = 48/686 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q +NY ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA Sbjct: 1 MGEQQKKNNYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N + V L +G + V DNGRGIPVE HP T+++++T LHAGGKFD+ +Y +SGGL Sbjct: 61 NEVTVKLLEDGGVEVEDNGRGIPVEKHP--SGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + + R ++ Q F+ +P + K GTR F PDP+ Sbjct: 119 HGVGISVVNALSTRVETEIKRDGYLWRQVFNNAVPEELEQV--KKARGTGTRQRFWPDPE 176 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------- 249 IF F+ + K Q A+L+ + ++ Sbjct: 177 IFET-VEFNFKTVAKRLQEMAFLNKGLTINLIDERPQVEAEDELADAAEDADAPKTSEEK 235 Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + + P K+ F++P GLK Y+ ++ + I + + + + VE A+ W Sbjct: 236 AQEEKAKKEPTKKTFHYPEGLKDYVDFINSKKTAVHPTIISFEAKGEDH---EVEVALQW 292 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + +YA + + + DD+ Sbjct: 293 NSGYAQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKDKDPNFSGDDVREG 352 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ A+ + +L NP EA ++ + Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLSDWLDANPAEAKVIVNKAVAS 412 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R+ RK R+ V RK+A LPGKLADC A +EL+IVEGDSAGGSAK R+ Sbjct: 413 AHARMAARKARDLVRRKSASDLGGLPGKLADCRSKDAKLSELYIVEGDSAGGSAKSGRDS 472 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKILNV A +KI N ++ ++ ALG ++ LRY K+++M DA Sbjct: 473 MFQAILPLRGKILNVEKARMDKILKNAEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 532 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HIA+LLLT ++ M L+E+ +++L +PPL+++ G + +A + + K+LEE Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLANPPLYKLKWGKGEPGFAFSDRERDKLLEE 592 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 G+ KI I R+KGLGEM A +L ET MD R L RV + + Sbjct: 593 GLAAGR-KINKDDGIQRYKGLGEMNAKELWETTMDPEYRVLRRVTLED----AAGADELF 647 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI A + + Sbjct: 648 SILMGDDVVARRSFITRNARDVRFLD 673 >gi|325978151|ref|YP_004287867.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178079|emb|CBZ48123.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 649 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 236/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLVWEIVDNAVDEALSGFGNQIDVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NSDDSVTVSDQGRGMPTGKH--AMGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMPDDTIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + ++ E EF++ G++ +++ E+ Sbjct: 186 IDFKFNTIAERLKESAFLLKDVTLTLTDNR-----PEEAEHLEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I ++ VE A+ + + + S+ N + T +GGTHE+GL+ A+ Sbjct: 241 KETLTPVISVTGEDQN----FQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQR 394 T+ + YA + ++ ++ D +LS+ + +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G +++ E+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMIYTIGAGVGAEFNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G + YA + +++ ++F K ++ R+KGLGEM A Q Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGK----GAQLQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL+RV I L + +N LMG K + R K+I++ F Sbjct: 593 LWETTMNPETRTLIRVTIED----LARAERRVNVLMGDKVEPRRKWIEDNVKF 641 >gi|284931763|gb|ADC31701.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. F] Length = 648 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 255/660 (38%), Positives = 376/660 (56%), Gaps = 25/660 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N + D Y + SI++LEGL VR RPGMYIG TD+K LHH+ E+IDN++DE++AGY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++++L N + V D+GRGIPV+ H K NKST+E +LT LHAGGKFD+ TY +SGGLHG Sbjct: 62 VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS V V R I +F G +PL PLE K+GTRI F PD I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDNKKQGTRIQFVPDFSI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 +D + + A+L+ +K ++ ++ + + + GG+K Y++ Sbjct: 181 MEQF-EYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327 ++ I +I G+ + K T +E A + S+CN I T++G Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G + AL + I +YA + + I +DL I+S+ EP++ GQTK Sbjct: 295 GTHEEGFKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKD 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L + + + + + + + + ++NP EA K+ + R R E RK+ Sbjct: 355 RLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFE 414 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC+ +EL+IVEGDSAGGSAK R+R QA+LPLRGK+LNV A E Sbjct: 415 SASLPGKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHE 474 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 KI N++I L+ A+G ++ + +RY K+IIMTDADVDGAHI LLLTFF++ M+ Sbjct: 475 KIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFP 534 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LIE+ H+++ PPL+R++ ++ Y + + ++ + + + E+ R+KGLGEM Sbjct: 535 LIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDD 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KRTLL+V IN + + + LMG + R FI++ A + ++ Sbjct: 592 VQLWETTMDPEKRTLLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647 >gi|94471626|gb|ABF21079.1| DNA gyrase subunit B [Acholeplasma hippikon] Length = 599 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 253/617 (41%), Positives = 361/617 (58%), Gaps = 20/617 (3%) Query: 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109 +ILEGLE VR RPGMYIG T E+ LHHL E++DN++DE +AGYAN + + + + + V Sbjct: 1 QILEGLEAVRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYANEVNIEILPDNIIKV 60 Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDEL 169 DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS Sbjct: 61 RDNGRGIPVDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWY 119 Query: 170 HVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLK 229 V + + I+ QK+ RGIP L + T TF DP IF + ++ L Sbjct: 120 LVQIHKDGKIYEQKYERGIPAYDLREIGTTTETG-TETTFLADPLIFTETTVYNYETLRN 178 Query: 230 MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289 Q A+L+ +K + P KEEF++ GG+ Y+Q +++S I + Sbjct: 179 RVQQLAFLNKGIKLTLEDKRIEH-----PMKEEFHYEGGIVEYIQHLNQSKSKIHQDAIY 233 Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 E+ G TVE A+ + + P I S+ N I T EGG HE G ++ALTR I KYA+ Sbjct: 234 IDKEQDGV---TVEIALQYVDTYTPNIYSFTNNINTTEGGMHEDGFKLALTRVISKYADD 290 Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 Q K+ +I +D I+SV EP+F GQTKTKL + + + + + +L Sbjct: 291 NQLKKDDAISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAIASQITSEALERFL 350 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELF 467 ++NP +A ++E VI + R+ RK +E+ R+ + + L KLADC +E++ Sbjct: 351 LENPNQAKLIVEKVISATRARVAARKAKELARRKSPLDALGFASKLADCRSKDPEKSEIY 410 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSAGGSAKQ R+ QA++PLRGK+LNV +K+ NN++I++L+QA G + Sbjct: 411 IVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKVRFDKMLNNKEIVNLIQAFGTGIGDE 470 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587 + LRY K++IMTDADVDGAHI +LLLTF ++ LIE +++ PPL++++ G Sbjct: 471 FDINKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYGKN 530 Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647 YA+ +E IL + GK I R+KGLGEM QL ET MD RTLL++++ Sbjct: 531 IQYAYSDEQLNTILASIE----GKPSIQRYKGLGEMNYEQLWETTMDPAARTLLQIKLED 586 Query: 648 DLNSLKDTQDSINKLMG 664 + + + LMG Sbjct: 587 AI----EADQVFSMLMG 599 >gi|326778153|ref|ZP_08237418.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1] gi|326658486|gb|EGE43332.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1] Length = 689 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 250/686 (36%), Positives = 371/686 (54%), Gaps = 28/686 (4%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 E S A + A+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL E Sbjct: 10 ADSGNPNENIPSTAGEHGEAAASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV P K +E++LT LHAG Sbjct: 70 VVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL + E Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEATE 188 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 189 E-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADS 246 Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +++ G+ +++ + + + + +VE A+ Sbjct: 247 VDAAEPSEEETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAM 306 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + + S+ N I T EGGTHE G R ALT + +YA + + ++ +D+ Sbjct: 307 QWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVR 366 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 487 NPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + ++ Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLF 662 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688 >gi|305681577|ref|ZP_07404383.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266] gi|305658737|gb|EFM48238.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266] Length = 673 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 258/683 (37%), Positives = 378/683 (55%), Gaps = 49/683 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y ASSI ILEGLE VR RPGMYIG T+E+ LHHL EV+DN++DE +AGYA+ +E Sbjct: 3 TAEHEYGASSITILEGLEAVRKRPGMYIGSTNERGLHHLVWEVVDNSVDEAMAGYADKVE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G + V+DNGRGIPVE HP T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTILADGGIEVIDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + R + Q F+ IP GT + F PDP++F Sbjct: 121 ISVVNALSTRVEADIKRDGKHWYQNFTNAIPEEL--VAGGPAEGTGTTVRFWPDPEVFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------ 254 F + + Q A+L+ + + + E+ Sbjct: 179 TV-FSFELIARRLQEMAFLNKGLTITLTDKRASEEEIELETLAEEIAEGDPETAVEAAEE 237 Query: 255 ---YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 +K+ FY+P GL+ Y++ ++++ I I + + + + VE A+ W Sbjct: 238 KVVKKKEKKKTFYYPNGLQDYVEHLNKSKTAIHPTIISLEVKGEN---LEVEVAMQWNSG 294 Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368 + ++ NTI T EGGTHE G R ALT + KYA + ++ ++ DD Sbjct: 295 YAQSVHTFANTINTIEGGTHEEGFRAALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAA 354 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428 ++SV + EP+F GQTKTKL + + + V+ A+ + +L NP EA ++ + + Sbjct: 355 VISVRVGEPQFEGQTKTKLGNSEVRGFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHA 414 Query: 429 RLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 R+ RK RE+ RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ Q Sbjct: 415 RVAARKAREMVRRKSATDLGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQ 474 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 A+LPLRGKILNV A +K+ N ++ ++ ALG ++ + LRY K+++M DADVD Sbjct: 475 AILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGIHDEFDIQKLRYGKIVLMADADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKK 606 G HIA+LLLT ++ M LIE+ H+FL PPL+++ +A+ + + ++L E Sbjct: 535 GQHIATLLLTLLFRFMPQLIEEGHVFLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGLA 594 Query: 607 HGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 G+ KI I R+KGLGEM AS+L ET +D R L RV D+N + + + L Sbjct: 595 AGR-KINKDDGIQRYKGLGEMNASELWETTLDPQVRILRRV----DMNDAQLADELFSIL 649 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG R FI +A + + Sbjct: 650 MGDDVAARRSFITRKAKDVRFLD 672 >gi|120401034|ref|YP_950863.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1] gi|119953852|gb|ABM10857.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1] Length = 675 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 240/685 (35%), Positives = 364/685 (53%), Gaps = 45/685 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A ++A Y A SI++LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPV H T+++++T LHAGGKF+ Y++SGG Sbjct: 62 ATKVDVRILEDGGVQVTDDGRGIPVAMH--STGIPTVDVVMTVLHAGGKFEEGAYQVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L + + + Q + R +P + K+ + GT I F DP Sbjct: 120 LHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVPGTL--KQGEKSKDTGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------ 249 IF +D + + Q A+L+ + + ++ Sbjct: 178 DIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAEAPKSAEEK 236 Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 A + F++PGGL +++ ++ I I + +G VE A+ W Sbjct: 237 AAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 + GK + I R+KGLGEM A +L ET MD + R L +V ++ + + Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + + Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674 >gi|103486580|ref|YP_616141.1| DNA topoisomerase IV subunit B [Sphingopyxis alaskensis RB2256] gi|98976657|gb|ABF52808.1| DNA topoisomerase IV, B subunit [Sphingopyxis alaskensis RB2256] Length = 659 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 342/656 (52%), Positives = 452/656 (68%), Gaps = 9/656 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 A ASD+Y+AS I +LEGLEPVR RPGMYIGGTDE+ALHHL +EVIDN+MDE +AG+A Sbjct: 8 AAIPASDSYNASQIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVIDNSMDEAVAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV+LD LT+VDNGRG+PV+ HPKFP KS LE+I+T LH+GGKF+ Y SGGLH Sbjct: 68 RIEVTLDVGNRLTIVDNGRGMPVDPHPKFPGKSALEVIMTMLHSGGKFEGKAYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS E + VAR ++ Q+F+RG PL PLE+ N+RGT ++F PDP+I Sbjct: 128 GVGVSVVNALSVETEIEVARAKQLYRQRFARGAPLGPLEELGATPNRRGTSVSFIPDPEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ F RL ++ +SKAYL V+ W C + P + F FPGGL +L+ Sbjct: 188 FGEHGRFKPQRLYRLARSKAYLFAGVEIRWKCAPALIGDD-TPSEAVFQFPGGLADHLKE 246 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGL 334 ++ R +++ F G+ + G +G EWAIAW + + YCNTI T GGTHE+GL Sbjct: 247 QIGARECATADPFVGRQDFPGD-QGRAEWAIAWPLWSDGSYSWYCNTIPTPAGGTHEAGL 305 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 R ALT+G++ + EL K+A I ++D+ + +LSVFIR+P+F QTK +L S +A R Sbjct: 306 RAALTKGLRAFGELIGQKKAAQITAEDVFNGSEMMLSVFIRDPQFQSQTKDRLSSPEAAR 365 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGK 452 ENA+RD FDH+L N LL V++R +ERL+R+ +REV RKTA RKLRLPGK Sbjct: 366 LTENAVRDHFDHFLSDNMDRGRALLGLVLDRMDERLKRKAEREVKRKTATSGRKLRLPGK 425 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC+ + GTELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA ++KIR NQ+ Sbjct: 426 LTDCANDGPEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASASADKIRANQE 485 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I DL ALGC R + LRYEK++IMTDADVDGAHIA+LL+TFF+QEM D++ H+ Sbjct: 486 IADLALALGCGMRKDCDADRLRYEKIVIMTDADVDGAHIATLLMTFFFQEMPDIVRNGHV 545 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL+R+T G S YA D+ H+ ++ K K+E+ RFKGLGEM +QLKET Sbjct: 546 YLAQPPLYRLTAGGLSAYARDDAHRAELEATLFK--GKKVEVGRFKGLGEMNPNQLKETT 603 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686 MD R+LLRV + ++ +D +++LMG + RF+FIQ A+ +D+ + Sbjct: 604 MDPATRSLLRVTLPQEYEERHLVKDLVDRLMGRNPEHRFQFIQANAASLDEAAIDA 659 >gi|290894160|ref|ZP_06557131.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071] gi|290556290|gb|EFD89833.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071] Length = 655 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HVDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R + QKF G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SFNYETLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLVKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 633 >gi|145221416|ref|YP_001132094.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK] gi|145213902|gb|ABP43306.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK] Length = 675 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 240/685 (35%), Positives = 368/685 (53%), Gaps = 45/685 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A ++A Y A SI++LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPV H T+++++T LHAGGKF+ Y++SGG Sbjct: 62 ATKVDVRILEDGGVQVTDDGRGIPVAMH--STGIPTIDVVMTVLHAGGKFEEGAYQVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + + Q + R +P + + +K GT I F DP Sbjct: 120 LHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVPGTLRK--GDPTDKTGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254 +IF +D + + Q A+L+ + + ++ E+ Sbjct: 178 EIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236 Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I + + +G VE A+ W Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KY + ++ ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ + +H+ NP EA ++ + Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 + GK + I R+KGLGEM A +L ET MD + R L +V ++ + + Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + + Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674 >gi|182437498|ref|YP_001825217.1| DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466014|dbj|BAG20534.1| putative DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] Length = 681 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 250/687 (36%), Positives = 371/687 (54%), Gaps = 28/687 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 E S A + A+ +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 1 MADSGNPNENIPSTAGEHGEAAASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV P K +E++LT LHA Sbjct: 61 EVVDNSVDEAMAGHADTIDVTILADGGVRVIDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL + E Sbjct: 120 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQHEAT 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------ 253 GT +TF D IF + L + Q A+L+ + + ++E A+ Sbjct: 180 EE-TGTTVTFWADGDIFET-TEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGAD 237 Query: 254 --------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 + +++ G+ +++ + + + + +VE A Sbjct: 238 SVDAAEPSEEETARSVTYHYENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIA 297 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDL 362 + W + + S+ N I T EGGTHE G R ALT + +YA + + ++ +D+ Sbjct: 298 MQWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDV 357 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ Sbjct: 358 REGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKG 417 Query: 423 IERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK Sbjct: 418 IAASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSG 477 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RN QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 478 RNPMYQAILPIRGKILNVEKARVDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILM 537 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKI 600 DADVDG HI +LLLTF ++ M L+E H++L PPL++I G YA+ + + + Sbjct: 538 ADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDAL 597 Query: 601 LEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 598 VALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDL 653 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 654 FSVLMGEDVEARRSFIQRNAKDVRFLD 680 >gi|314933532|ref|ZP_07840897.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87] gi|313653682|gb|EFS17439.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87] Length = 664 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 235/654 (35%), Positives = 357/654 (54%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 2 NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINQDDSISIEDNGRGMPTGIH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K+ K GT++TF+PDP+IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTFKPDPEIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 180 TTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERE-----EVYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ + VE A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLHDVTTFSGL----ANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450 V++ + + YL + + L++ I+ + R RK RE R K + Sbjct: 351 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKHKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA ++ +K+ ++ K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 636 >gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3] gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US] gi|282931536|ref|ZP_06337035.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153] gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3] gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US] gi|281304343|gb|EFA96446.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153] Length = 651 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 252/654 (38%), Positives = 368/654 (56%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +AG+A I Sbjct: 13 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDECLAGFATKI 72 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ +G +TV D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 73 EVTVEEDGSVTVQDDGRGIPVDIQKK-TGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIF 216 G SVVNALS ++ VTV R + F G L++ V ++ GT + F PDP IF Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIF 191 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L K Q A+L+ +K ++ ++ + E + +++ GG+K Y+ Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKNS-----AETDVYHYEGGIKEYVAFL 246 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + + + G VE A+ + + ++ N I T EGG HE+G + Sbjct: 247 DEKEEKLFDTPVYVEGDYDGI---NVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFK 303 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++S+ P+F GQTKTKL + DA+ Sbjct: 304 TALTRVINDYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDAR 363 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 V+ A + F +L++NP K++E + R+ ++ RE +K+ + LPGK Sbjct: 364 AAVDKAFSEAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGK 423 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 424 LADNTSNDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 483 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + + RY K+IIMTDADVDGAHI +LLLT FY+ M +I+ ++ Sbjct: 484 IRTLFTALGTGFGADFDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYV 543 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM A QL ET Sbjct: 544 YIARPPLYQVKQGKIIKYLDSDEELHDYLGSLQPS--PKPTVQRYKGLGEMSADQLWETT 601 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 MD R L RV D +D LMG + R FI + A +++++ Sbjct: 602 MDPENRRLDRV----DPKYAEDADAVFEMLMGNEVGPRRDFITKNAKYVENLDA 651 >gi|15607147|ref|NP_214519.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Rv] gi|148659762|ref|YP_001281285.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|215405989|ref|ZP_03418170.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|218755721|ref|ZP_03534517.1| DNA gyrase subunit B [Mycobacterium tuberculosis GM 1503] gi|253796920|ref|YP_003029921.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435] gi|289552255|ref|ZP_06441465.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605] gi|289747775|ref|ZP_06507153.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|289760102|ref|ZP_06519480.1| subunit B gyrB [Mycobacterium tuberculosis T85] gi|289764120|ref|ZP_06523498.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503] gi|294995613|ref|ZP_06801304.1| DNA gyrase subunit B [Mycobacterium tuberculosis 210] gi|298527403|ref|ZP_07014812.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A] gi|308373866|ref|ZP_07433901.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006] gi|474435|emb|CAA55486.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|1552558|emb|CAB02426.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium tuberculosis H37Rv] gi|148503914|gb|ABQ71723.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|253318423|gb|ACT23026.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435] gi|289436887|gb|EFD19380.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605] gi|289688303|gb|EFD55791.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|289711626|gb|EFD75642.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503] gi|289715666|gb|EFD79678.1| subunit B gyrB [Mycobacterium tuberculosis T85] gi|298497197|gb|EFI32491.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A] gi|308343895|gb|EFP32746.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006] gi|326905764|gb|EGE52697.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis W-148] gi|328456711|gb|AEB02134.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 4207] Length = 714 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 41 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713 >gi|31791182|ref|NP_853675.1| DNA gyrase subunit B [Mycobacterium bovis AF2122/97] gi|121635888|ref|YP_976111.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635915|ref|YP_976138.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988388|ref|YP_002643055.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|260184858|ref|ZP_05762332.1| DNA gyrase subunit B [Mycobacterium tuberculosis CPHL_A] gi|289445530|ref|ZP_06435274.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A] gi|289572581|ref|ZP_06452808.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85] gi|31616767|emb|CAD92867.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium bovis AF2122/97] gi|121491535|emb|CAL69989.1| DNA gyrase subunit B gyrB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491562|emb|CAL70019.1| Dna gyrase subunit B gyrB (DNA topoisomerase) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771501|dbj|BAH24307.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|289418488|gb|EFD15689.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A] gi|289537012|gb|EFD41590.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85] Length = 714 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 252/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 41 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP ++ ++ + Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSS 452 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713 >gi|315441702|ref|YP_004074581.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1] gi|315260005|gb|ADT96746.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1] Length = 675 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 240/685 (35%), Positives = 368/685 (53%), Gaps = 45/685 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A ++A Y A SI++LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPV H T+++++T LHAGGKF+ Y++SGG Sbjct: 62 ATKVDVRILEDGGVQVTDDGRGIPVSMH--STGIPTIDVVMTVLHAGGKFEEGAYQVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + + Q + R +P + + +K GT I F DP Sbjct: 120 LHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVPGTLRK--GDPTDKTGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254 +IF +D + + Q A+L+ + + ++ E+ Sbjct: 178 EIFETTN-YDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236 Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I + + +G VE A+ W Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KY + ++ ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ + +H+ NP EA ++ + Sbjct: 354 LAAVISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKG---KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 + GK + I R+KGLGEM A +L ET MD + R L +V ++ + + Sbjct: 594 GRAAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFS 649 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + + Sbjct: 650 ILMGEDVEARRSFITRNAKDVRFLD 674 >gi|256843827|ref|ZP_05549314.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN] gi|256613732|gb|EEU18934.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN] Length = 654 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 247/668 (36%), Positives = 365/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKANLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IEV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V ++ Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L A+L+ + ++ ++ E + Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIHELAFLNKGLTLTFTDKRK-----DTAETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + F GG+K Y+ + + ++ + ++ G VE A+ + + ++ N Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA ++ + ++ +D+ I+SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +I++ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|314936492|ref|ZP_07843839.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp. hominis C80] gi|313655111|gb|EFS18856.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp. hominis C80] Length = 662 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 236/652 (36%), Positives = 360/652 (55%), Gaps = 31/652 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +++Y SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N I+V+ Sbjct: 2 TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + ++V DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG S Sbjct: 62 INEDNSISVEDNGRGMPTGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L V + R I+ Q F G + K K GT++TF+PD IF Sbjct: 120 VVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTFKPDSSIFKATT 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + Q A+L +K ++ E+ + +++ G+K ++ E + Sbjct: 180 SFNFDTLSERLQESAFLLKNLKITLKDLRDGKERE-----DVYHYEEGIKEFVSYINEGK 234 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A+T Sbjct: 235 EVLH-DVTTFTGAANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMT 290 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA + ++ +D+ ++SV I E +F GQTK+KL + +A+ Sbjct: 291 RVFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V++ + + +YL + + L++ I+ + R RK RE R K L GK Sbjct: 351 VDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N++ Sbjct: 411 LTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ + Sbjct: 471 INTIIHTIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRV 530 Query: 573 FLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++ +G K YA ++ +K+ ++ K + R+KGLGEM QL Sbjct: 531 FIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFILQRYKGLGEMNPEQL 586 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ ++ S K + LMG K R ++I+ F Sbjct: 587 WETTMNPETRTLIRVQIDDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 634 >gi|289550859|ref|YP_003471763.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01] gi|315658360|ref|ZP_07911232.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus lugdunensis M23590] gi|289180391|gb|ADC87636.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01] gi|315496689|gb|EFU85012.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus lugdunensis M23590] Length = 666 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 236/654 (36%), Positives = 356/654 (54%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIN 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +T+ DNGRG+P H K T+++I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINKDNSITIEDNGRGMPTGIH--ASGKPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G + K K GT++TF+PDP+IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYKQSFKNGGLPATGLVKAGKTKKTGTKVTFKPDPEIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 182 STTFSFQTLSERLQESAFLLKNLKIKLTDLRSGKERE-----ELYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ +H V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLHDVTMFSGQ----SHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA ++ +I +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKEKDKNIDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTTEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + YL + + L++ I+ + R RK R+ R K L Sbjct: 353 SAVDSVVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKARDDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGNDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G + YA ++ K+ + K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKAKQVEYAWTDDELDKLQQSLGK----GFTLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIERHVEF 638 >gi|228476082|ref|ZP_04060790.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119] gi|228269905|gb|EEK11385.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119] Length = 666 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 236/656 (35%), Positives = 360/656 (54%), Gaps = 31/656 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +++Y SI++LEGLE VR RPGMYIG TD++ LHHL E++DN++DEV+ GY N Sbjct: 2 ATKMTNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V+++ + ++V DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 IDVTINEDNSISVEDNGRGMPTGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V + R I+ Q F G + K K GT++TF+PD IF Sbjct: 120 VGASVVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTFKPDSSIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F+ L + Q A+L +K ++ E+ + +++ G+K ++ Sbjct: 180 KATTSFNFDTLSERLQESAFLLKNLKITLKDLRDGKERE-----DVYHYEEGIKEFVSYI 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + Sbjct: 235 NEGKEVLH-DVTTFTGAANGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR YA + ++ +D+ ++SV I E +F GQTK+KL + + Sbjct: 291 TAMTRVFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448 A+ V++ + + +YL + + L++ I+ + R RK RE R K Sbjct: 351 ARSAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTL 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I Sbjct: 411 LSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIF 470 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G + ++ ED Y +VIIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 KNEEINTIIHTIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQ 530 Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +F+ PPL+++ +G K YA ++ +K+ ++ K + R+KGLGEM Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFILQRYKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV+I+ ++ S K + LMG K R ++I+ F Sbjct: 587 PEQLWETTMNPETRTLIRVQIDDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 638 >gi|110003910|emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma citri] Length = 639 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 262/649 (40%), Positives = 378/649 (58%), Gaps = 18/649 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNY++ SI+ILEGLE +R RPGMYIG T+ + LHHL E++DN++DEV+A +AN I++ L Sbjct: 3 DNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIIL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+DNGRGIP+E HPK STLE + T LHAGGKFD++TY+ISGGLHGVG SV Sbjct: 63 NKDESITVIDNGRGIPIEIHPK-TKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V V + N + +F G + K+ ++ GT +TF PD KIF + Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSETGTTVTFLPDEKIFKETTI 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L+ ++ +E E+ + + F G+K Y+ + Sbjct: 182 FSFSTIQNRIKQLVFLNKGLEISLVDLREEDEE----KTVLYQFNNGIKDYVLELNKTIG 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 +++F + + VE+ + + + I S+CN I T EGGTHE G R+A+ R Sbjct: 238 TPLNDVFYVEGIEDNI---VVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVR 294 Query: 341 GIKKYAELTQNKR---AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I Y + DD+ I+S+ EP++ GQTKTKL + + ++ V Sbjct: 295 EINNYFKNINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTKTKLGNSEVKKIVS 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 N + YL++NP +A K++E + + R+ ++ +E RK + LPGKL+DC Sbjct: 355 NIVGKGLSSYLLENPEDAKKIIEKISLSLKARIVAQRAKETTRRKIVMDSFSLPGKLSDC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 A EL+IVEGDSAGGSAK RNR QA+LPLRGKILNV A KI N +I + Sbjct: 415 ETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSI 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + + ++ LRY+KVIIMTDADVDGAHI LLLTFFY+ M DLIE ++++ Sbjct: 475 ITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQ 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ + Y + + + EE K K I R+KGLGEM QL ET MD Sbjct: 535 PPLYKVENSNQIRYVYSDNELELYKEELLKQNK-NYTIQRYKGLGEMNPEQLWETTMDPE 593 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +R LL+V +N + N+LMG + R KFI+E A ++ ++ Sbjct: 594 RRLLLKVSVNNAF----EANLICNELMGENVEPRKKFIRENAKYVKNLD 638 >gi|268610497|ref|ZP_06144224.1| DNA gyrase subunit B [Ruminococcus flavefaciens FD-1] Length = 643 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 242/655 (36%), Positives = 359/655 (54%), Gaps = 20/655 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Q ++NYD + I++LEGLE VR RPGMYIG T LHHL E++DN++DE +AGY Sbjct: 2 SQQNNNNYDENDIQVLEGLEAVRKRPGMYIGSTGPGGLHHLVYEIVDNSIDEALAGYCTE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + V DNGRGIPV HPK S ++ T LHAGGKF Y++SGGLHG Sbjct: 62 INVEILEGDVIRVSDNGRGIPVGIHPK-EGISAATVVYTILHAGGKFGGGGYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L +TV I+ Q+F RG L+ GT + F+ D +IF Sbjct: 121 VGASVVNALSEWLELTVKDGEHIYFQRFERGHYDEQLKIIGDTTE-TGTSVMFKADGEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 +D LLK + +A+L+ +K ++ ++ G E ++ GG++ ++ Sbjct: 180 EHTV-YDYEILLKRLREQAFLNAGIKIVFTDKRDKDNIVG----ETLHYEGGIREFVDHI 234 Query: 277 LENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 R +S E+ + + E A+ + + I S+ N I T +GG+HE+G Sbjct: 235 HATRGLESLSGEVIYVSGTQGDSF---AEIAMQYNDSYNEVILSFANNIHTKDGGSHETG 291 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALT+ I +Y K + +D+ I+SV + E EF GQTK +L + + Sbjct: 292 FKNALTKVINEYGSKMGKLKEGEKLKGEDVREGLTAIISVKLTECEFEGQTKGRLGNPEV 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPG 451 + VE + + ++L +NP A + + + +R + +K A +P Sbjct: 352 KPFVEKLVTEKLMNFLEENPETANIIFDKCMSALRAREAAKRAREAERKKNAFGNAAMPE 411 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS+ TE++IVEGDSAGGSAKQ R+R QA+L L GK+LNV A ++I N Sbjct: 412 KLADCSERDNRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYGND 471 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ +V ALG + E LRY KVIIM DADVDG HI +LLLTFF++ M LI + Sbjct: 472 KLAPVVTALGTGLGEDFDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGN 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKE 630 +++ PPLFR+ + + YA +E + + + E + GK K + + R+KGLGEM QL E Sbjct: 532 VYIAQPPLFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWE 591 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD RT++++ + L + LMG K + R FI++ A F ++ Sbjct: 592 TTMDPEHRTIVKISMEDALK----ADEIFTILMGDKVEPRRLFIEKNAKFAQNLD 642 >gi|55820667|ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMG 18311] gi|55736652|gb|AAV60294.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus LMG 18311] Length = 649 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 232/652 (35%), Positives = 369/652 (56%), Gaps = 32/652 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ ++I V+L Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLVWEIVDNAVDEALSGFGDVIAVTL 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVSDSGRGMPTGMH--AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ LEK K ++K GT++TF PD IF Sbjct: 127 VNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMPDASIFSTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L V + + E +EEF++ G++ ++ E+ Sbjct: 187 -DFKFNTISERLKESAFLLKNVTMTLTDLRGEEE-----VREEFHYENGVQDFVSYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ I+ ++ +++ + + I S+ N + T +GG+HE+G + A+T Sbjct: 241 KETLTPVIYIDGDQQDFHLELALQYNDGYSDN---ILSFVNNVRTKDGGSHETGFKSAIT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 + YA T ++ ++ D ++S+ + +F GQTK KL S A+ Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V+ + + ++L++N A+ L+ I+ + R RK R+ +R K GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMIYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHV 537 Query: 573 FLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G YA + +++ ++F + + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAL----LQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 WETTMNPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|254366465|ref|ZP_04982509.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem] gi|134151977|gb|EBA44022.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem] Length = 697 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 24 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 83 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 84 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 141 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 142 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 199 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 200 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 258 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 259 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 315 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 316 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 375 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 376 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 435 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 436 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 495 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 496 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 555 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 556 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 615 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 616 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 670 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLD 696 >gi|254820903|ref|ZP_05225904.1| DNA gyrase subunit B [Mycobacterium intracellulare ATCC 13950] Length = 677 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 254/688 (36%), Positives = 371/688 (53%), Gaps = 49/688 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D+Y AS+I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKKKAQDDYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151 AN ++V + +G + V DNGRGIPV H T+++++T LHAGGKF +NS Y +S Sbjct: 62 ANKVDVRILDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L V +AR +SQ + +P + K+ + + GT I F Sbjct: 120 GGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVPGTL--KQGEATKRTGTTIRFWA 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254 DP IF +D + + Q A+L+ + + ++ E+ Sbjct: 178 DPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQ 236 Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + F++PGGL +++ +S I I + G VE A+ Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGH---EVEIAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601 DADVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +L Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLL 593 Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 E +K GK KI I R+KGLGEM A +L ET MD R L +V ++ + Sbjct: 594 EAGQKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDD----AAAADE 648 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676 >gi|1209515|gb|AAC43643.1| gyrase B [Mycoplasma pneumoniae] Length = 637 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 250/652 (38%), Positives = 375/652 (57%), Gaps = 28/652 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + YD+SSI+ILEGLE VR RPGMYIG T E+ LHH+ E+IDN++DE + G+A Sbjct: 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60 Query: 95 NLIEVSLDGNGFLT-VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + ++++L + F+T V D+GRGIPV+ HPK N+ST+E + T LHAGGKFDN +Y++SGG Sbjct: 61 STVKLTL-KDNFVTIVEDDGRGIPVDIHPK-TNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS V VAR++ + F G + L + K + GT++ F PD Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + + + Q A+L+ ++ + ++ P+ + + GGL Y Sbjct: 179 FTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFVDERRQ-----NPQSFSWKYDGGLVQY 232 Query: 273 LQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 + + + +I G+ + ++ VE A + + I S+CN I T Sbjct: 233 IHHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINT 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQ 382 EGGTH G R AL + I ++A + + I DD+ I+S+ P++ GQ Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KL + + + V + + + F+ ++++NP EA ++ + E R R ++ RE RK Sbjct: 353 TKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + LPGKLADC+ +EL+IVEGDSAGG+AK R+R QA+LPLRGKILNV Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 + E+I NN +I LV A+GC + + E LRY K+IIMTDADVDGAHI +LLLTFF++ Sbjct: 473 SHFEQIFNNVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 MY L+EQ ++++ PPL++++ K +Y + ++ ++ H K + R+KGLG Sbjct: 533 FMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQ---HPNLKYNLQRYKGLG 589 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 EM A QL ET MD RTLL+V + + + LMG + R +F Sbjct: 590 EMDAIQLWETTMDPKVRTLLKVTVED----ASIADKAFSLLMGDEVPPRREF 637 >gi|312869074|ref|ZP_07729248.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3] gi|311095320|gb|EFQ53590.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3] Length = 658 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD SSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I V+++ Sbjct: 8 YDESSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 DNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + +KF G P+ L+K K R GT +TF+PDP IF Sbjct: 126 NALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRADSGTTVTFKPDPAIFTTTT- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + E+ + F F G++ ++ E + Sbjct: 185 YDYNTLANRLRESAFLLKGIKIVLTDKRPGQEQENV-----FQFNDGIQEFVSYLNEGKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + + +G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 240 TLGK-TLYFDGKDQGV---EVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 296 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 356 DTIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+ ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNANKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGAGSEFDVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ QG K YA + K+ + K ++ RFKGLGEM A QL Sbjct: 536 IALPPLYRLQQGKGAKTKITYAWTNDELTKLTKRMGKTA----QLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I + + + LMG K + R ++I+E F Sbjct: 592 ETTMNPETRTLIRVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638 >gi|227529213|ref|ZP_03959262.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350859|gb|EEJ41150.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 676 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 240/656 (36%), Positives = 361/656 (55%), Gaps = 34/656 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDASSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I Sbjct: 3 TKKETYDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157 V+++ + +TV D+GRG+PV H K T E+I+T LHAGGKF + Y+ SGGLHGV Sbjct: 63 VTIEEDNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS L +T+ R + + +KF G P+ L+K GT ++F+PDP IF Sbjct: 121 GASVVNALSTNLTLTIVRDHERYQEKFKDGGQPIGTLKKLGHTNAGNGTTVSFKPDPSIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 +D L + A+L +K + ++ EK ++ F + G++ ++ Sbjct: 181 TTTV-YDYNTLANRLRESAFLLKGIKIVLTDKRKDHEK-----QDIFQYKEGIQEFVAYL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLR 335 E + + + + G VE A + + E S+ N + T +GGTHE+G R Sbjct: 235 NEGKDTLGKVL-YFDGSQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFR 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A T+ +YA + ++ D+ ++SV I E +F GQTK KL + + Sbjct: 291 SAWTKTFNEYAHKVGLLKDKDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---R 448 A++ V++ + + + L++N A L+ I+ E R RK R R + Sbjct: 351 ARKIVDSIVSEQLGYALMENGDFAQMLIRKSIKAREAREAARKARNQARGGKRKSRKERN 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + Sbjct: 411 LSGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVL 470 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N+++ ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 471 KNEELNTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIE 530 Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL+R+ G K YA + ++ ++ K ++ RFKGLGEM Sbjct: 531 AGKIYIALPPLYRLQTGRGAKTKITYAWTNDELTELTKKAGKSA----QLQRFKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL++V I + + + LMG K + R ++I++ F Sbjct: 587 ADQLWETTMNPETRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEDNVHF 638 >gi|308376284|ref|ZP_07438242.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008] gi|308351597|gb|EFP40448.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008] Length = 696 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 23 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 82 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 83 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 140 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 141 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 198 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 199 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 257 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 258 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 314 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 315 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 374 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 375 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 434 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 435 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 494 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 495 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 554 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 555 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 614 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 615 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 669 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 670 SILMGEDVDARRSFITRNAKDVRFLD 695 >gi|215432910|ref|ZP_03430829.1| DNA gyrase subunit B [Mycobacterium tuberculosis EAS054] gi|260198989|ref|ZP_05766480.1| DNA gyrase subunit B [Mycobacterium tuberculosis T46] gi|289441372|ref|ZP_06431116.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46] gi|289748467|ref|ZP_06507845.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92] gi|289756064|ref|ZP_06515442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289414291|gb|EFD11531.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46] gi|289689054|gb|EFD56483.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92] gi|289696651|gb|EFD64080.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 714 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 41 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 158 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE AI W Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIQW 332 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713 >gi|315302927|ref|ZP_07873658.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596] gi|313628700|gb|EFR97102.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596] Length = 655 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 237/652 (36%), Positives = 359/652 (55%), Gaps = 35/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGL+ VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L Sbjct: 4 NEYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGKKIVVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 +G ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 64 HDDGSVSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L VT+ R+ + Q+F G KK GT I F+PDP IF Sbjct: 122 VVNALSEWLVVTINREGATYEQRFKNGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ L + + A+L + ++ + E F+F G+K +++ E + Sbjct: 181 SYNYETLSERLRESAFLLKGMLIQLIDER-------VGMAESFHFEEGVKNFVEYINEGK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + E VE A + + I S+ N + T G+HESG++ A+T Sbjct: 234 DVLHPVA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMT 289 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 R YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ Sbjct: 290 RIFNDYARRVNLLKEKEKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGK 452 V+ + + ++L +NP ++ L++ ++ E R RK RE R +K L GK Sbjct: 350 VDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++ Sbjct: 410 LTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEE 469 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G +++ D Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 470 ISTIIHTVGAGVGTEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKV 529 Query: 573 FLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 F+ PPL+++++G K V YA +E +++ K I R+KGLGEM A QL Sbjct: 530 FIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQL 585 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL+RV ++ + + LMG K + R K+I++ F Sbjct: 586 WETTMNPDTRTLIRVRVDD----TARAERRVATLMGDKVEPRRKWIEKHVEF 633 >gi|69251026|ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO] gi|68193894|gb|EAN08477.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO] Length = 665 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 244/642 (38%), Positives = 350/642 (54%), Gaps = 33/642 (5%) Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 +EGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I+V++ + +TV D Sbjct: 1 MEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVAD 60 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 +GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V Sbjct: 61 SGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIV 118 Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 T+ R + QKF G P L+K K + GT + F PD IF F L + Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIFSTT-KFSYEILAER 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L VK S + P KE F++ G+K ++ E + ++ + Sbjct: 178 LRESAFLLKGVKISLSDLR-----GEEPVKEIFHYEEGIKEFVDYLNEEKDTLTPVV-YF 231 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 EK+G VE A + + E S+ N + T +GGTHE+G++ A+T+ +YA Sbjct: 232 SGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKV 288 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405 +R ++ D +LS+ + E +F GQTK KL + A+ V+N + + Sbjct: 289 GLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMG 348 Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAH 462 YL +N + L+ I+ E R RK RE +R RK L GKL Sbjct: 349 FYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPK 408 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G Sbjct: 409 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGA 468 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++ Sbjct: 469 GVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKV 528 Query: 583 TQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 ++G + + YA ++ ++++ K + R+KGLGEM A QL ET MD R Sbjct: 529 SKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEMNAEQLWETTMDPTSR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 TL+RV I+ + + LMG K + R K+I+ F Sbjct: 585 TLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 622 >gi|167969468|ref|ZP_02551745.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|215413859|ref|ZP_03422524.1| DNA gyrase subunit B [Mycobacterium tuberculosis 94_M4241A] gi|215448278|ref|ZP_03435030.1| DNA gyrase subunit B [Mycobacterium tuberculosis T85] gi|254548933|ref|ZP_05139380.1| DNA gyrase subunit B [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297632473|ref|ZP_06950253.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN 4207] gi|297729442|ref|ZP_06958560.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN R506] gi|313656771|ref|ZP_07813651.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN V2475] gi|158513716|sp|A5TY73|GYRB_MYCTA RecName: Full=DNA gyrase subunit B gi|158517773|sp|P0C5C5|GYRB_MYCTU RecName: Full=DNA gyrase subunit B gi|323717344|gb|EGB26549.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CDC1551A] Length = 675 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674 >gi|328943452|ref|ZP_08240917.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae DSM 15829] gi|327491421|gb|EGF23195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae DSM 15829] Length = 650 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 256/656 (39%), Positives = 367/656 (55%), Gaps = 26/656 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y + I++LEGL+PVR RPGMYIG T LHHL E++DN++DE +AGY I V + Sbjct: 8 SSYGGNEIKVLEGLDPVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCTSINVIV 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V DNGRGIPVE HP+ TLE++LT LHAGGKFDN+ Y++SGGLHGVG+SV Sbjct: 68 HPDNSISVEDNGRGIPVEMHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGVGVSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V+R IF +F RG + + GT ITF PD IF Sbjct: 127 VNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSS-HTGTTITFWPDDTIFETTT- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L Q A+L+ + + ++E P KEEF + GG+ +++ E ++ Sbjct: 185 YNFDTLHDRLQETAFLNKNLHISLTDEREE-----TPRKEEFCYSGGIVDFVKYLNEEKT 239 Query: 282 L----ISSEIFTGKTEKKG--THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 + G + RG VE +I W E S+ N I TDEGG H G Sbjct: 240 ILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGF 299 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALT+ I YA + ++ ++ DD+ I+SV + +P+F GQTK KL S Sbjct: 300 RSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYM 359 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451 + + YL ++P +A ++ + + ++ RL ++ R+V R+ + LPG Sbjct: 360 RTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPG 419 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV ++ +++ Sbjct: 420 KLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSE 479 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ A+G ++ E RY K++IMTDADVDGAHI LLLTFFY+ M L++ + Sbjct: 480 SITSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGY 539 Query: 572 LFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL++I K + +E LE + K + R+KGLGEM QL Sbjct: 540 IYVAQPPLYQIKAKGKKYGKYLYTDEEL--ALEAKQFEDSSKYSVQRYKGLGEMDPEQLW 597 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +LRV ++ ++ + ++ LMGT+ ++R FIQ A + + Sbjct: 598 STTMEPKNRIMLRVTVDD----AREAERAVANLMGTQVEKRKDFIQTHAKDVRFLD 649 >gi|251810787|ref|ZP_04825260.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060] gi|251805715|gb|EES58372.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060] Length = 664 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINQDGSISIEDNGRGMPTGIH--VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636 >gi|215425191|ref|ZP_03423110.1| DNA gyrase subunit B [Mycobacterium tuberculosis T92] Length = 675 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE AI W Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674 >gi|213966260|ref|ZP_03394444.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46] gi|213951112|gb|EEB62510.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46] Length = 679 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 257/688 (37%), Positives = 372/688 (54%), Gaps = 53/688 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YDASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA +E Sbjct: 3 ATEHQYDASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYATDVE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + V DNGRGIPVE HP T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLEDGGVQVRDNGRGIPVEMHP--SGMPTVQVVMTQLHAGGKFDSESYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + V R + Q F + +P + K GT F PDP+IF Sbjct: 121 ISVVNALSTRMETEVIRDGYTWYQNFDQAVPEEIIR--GKKTRGSGTTQRFWPDPEIFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------------------- 249 F + + + A+L+ + + Sbjct: 179 T-DFKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAETESAEIAKDAAEE 237 Query: 250 --EIAEKYGIPE--KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 E EK P+ ++ F++P GL+ Y++T +++++I I + +G VE A Sbjct: 238 QKEKTEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFDAAGEGH---EVEIA 294 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362 + W + ++ NTI T EGGTHE G R ALT + +YA + ++ ++ +D Sbjct: 295 MQWNSGYSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHRLLKEKENNLSGEDC 354 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 ++SV + +P+F GQTKTKL + + + V+ + H+L NP EA ++ Sbjct: 355 REGLAAVISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWLEANPAEAKAIVNKA 414 Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I + R RK R+ V RK+A LPGKLADC +ELFIVEGDSAGGSAK Sbjct: 415 IASAHARQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELFIVEGDSAGGSAKAG 474 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RN QA+LPLRGKILNV A +K N ++ ++ ALG ++ E LRY K+++M Sbjct: 475 RNSLFQAILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGIHDEFDIEKLRYHKIVLM 534 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600 DADVDG HIA+LLLT ++ M LI++ H++L PPL+++ + YA+ + + ++ Sbjct: 535 ADADVDGQHIATLLLTLLFRLMRPLIDEGHVYLAQPPLYKLKWAKGEPGYAYSDAERDQL 594 Query: 601 LEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 LEE + + + R+KGLGEM A++L +T MD + R L +V L + + Sbjct: 595 LEEGLAANRKINKDDGVQRYKGLGEMNAAELWDTTMDPDHRVLRKV----ALEDAQKADE 650 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG R FI A + + Sbjct: 651 LFTILMGDDVASRRSFITRNAKDVRFLD 678 >gi|89894290|ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobacterium hafniense Y51] gi|89333738|dbj|BAE83333.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 638 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A SI++LEGLE VR RPGMYIG T K LHH E+IDNA+DE AG+ IEV+L+ Sbjct: 7 YNAESIQVLEGLEAVRKRPGMYIGSTGSKGLHHCAWEIIDNAIDEAGAGFCTRIEVTLNP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G LTV+DNGRG+P++ HP + + LHAGGKFD +Y+ SGGLHGVG SVVN Sbjct: 67 DGSLTVLDNGRGVPIDIHP-VKQIPAVRLAFEQLHAGGKFDGQSYKTSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 ALS L V V+R+ IF ++ G S L+ +K GT++TF+PDP IF + F Sbjct: 126 ALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDPLIFKETTSF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L A+L+ + + ++ E F G+ +++ + Sbjct: 186 KFDTLRSRLMELAFLNPGLTIVLTDQRK------ETRSETFQSKNGVIGFVEHLNKESDY 239 Query: 283 I--SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339 + K EK VE AI + + E+ + SY N I TDEGGTHESG R ALT Sbjct: 240 NPVHKKPIFFKGEKDDII---VECAIQYNDGEDEHLRSYVNNIPTDEGGTHESGFRTALT 296 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + Y + K+ S+I DDL +LSV +REP+F GQTKTKL + + + V++ Sbjct: 297 KVFNAYGKKNNIFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVVQS 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + QNP A + + ERL ++ +E + L GKLA CS Sbjct: 357 LTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAACS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + + ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A +K+ N++I ++ Sbjct: 417 EKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRSMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G ++ + Y +V IMTDAD+DGAHI LLLTFFY+ M LI +++ Sbjct: 477 TAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYIAQA 536 Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PL+++ +G YA+DE + L+E K K + R+KGLGEM QL ET ++ Sbjct: 537 PLYKVEKEKGKVVRYAYDEGELKDALKELGKSAK----LQRYKGLGEMNPEQLWETTLNP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 R +++V I+ L + + + LMG + D R +F+ E F +D Sbjct: 593 VNRRMIQVTIDDAL----EAERKLKILMGEQVDPRREFLMENIVFTED 636 >gi|302382976|ref|YP_003818799.1| DNA topoisomerase IV subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302193604|gb|ADL01176.1| DNA topoisomerase IV, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 691 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 356/649 (54%), Positives = 460/649 (70%), Gaps = 15/649 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD Sbjct: 51 SYSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVARHAKLITVDLD 110 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 GFL+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF YE SGGLHGVG+SVV Sbjct: 111 AEGFLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVV 170 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALSD L VTV R + Q FSRG+PL +E+ + + +GT I F PD +IFG A F Sbjct: 171 NALSDRLDVTVWRDGFEWKQSFSRGLPLGSIEQVQPSKK-KGTLIRFHPDAEIFGVGAAF 229 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 ARL +M +SKAYL V+ W+C + PE F+FP GL L ++ Sbjct: 230 KPARLFRMARSKAYLFRGVEIKWTCAPDRITDA-TPETATFHFPNGLADALAERIGELET 288 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVA 337 ++ F+G+ E+KG G VEWA+AW E + + SYCNT+ T +GGTHE+G R A Sbjct: 289 VTP-TFSGRVERKGEA-GAVEWAVAWSPIGFGEADGFVQSYCNTVATPDGGTHEAGFRAA 346 Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 L RG+K Y ELT KRA+ I ++D++ +A ++SVFIR PEF GQTK +L S + QR VE Sbjct: 347 LVRGLKAYGELTHEKRAVQITAEDVIANAGAMISVFIRNPEFQGQTKDRLSSSEGQRLVE 406 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 LRDP DH+L +NP +A LL ++IER+E+RLRRRK +EV R A RKLRLPGKL+DCS Sbjct: 407 ALLRDPLDHWLTENPKQANVLLGFIIERAEDRLRRRKDKEVQRAQATRKLRLPGKLSDCS 466 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + A+GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVA+A ++K+R N ++ DL Sbjct: 467 RQSANGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVANATADKLRANIELSDLT 526 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG T ++ + LRYE+++IMTDADVDGAHIA+LL+TFFY+ M ++I Q LF+ P Sbjct: 527 LALGVTTGPRFHIDQLRYERIVIMTDADVDGAHIAALLITFFYRSMPEVIRQGRLFMALP 586 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R++ G S YA DE H+ +++ K K+E+ RFKGLGEM+ASQLKET MD K Sbjct: 587 PLYRLSAGPLSEYARDEAHRDELMATVFK--GKKVELGRFKGLGEMMASQLKETTMDPKK 644 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVG 685 RTL RV + + N +D + +LMG KAD RF+FIQ+ A F + D+ Sbjct: 645 RTLARVTLPESEND---IEDLVERLMGKKADARFRFIQDNAQFAVADLD 690 >gi|260203142|ref|ZP_05770633.1| DNA gyrase subunit B [Mycobacterium tuberculosis K85] Length = 675 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 252/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 178 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP ++ ++ + Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674 >gi|242373650|ref|ZP_04819224.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis M23864:W1] gi|242348618|gb|EES40220.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis M23864:W1] Length = 664 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 234/654 (35%), Positives = 359/654 (54%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 2 NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINKDDSISIKDNGRGMPTGIH--ASGKPTVEVIFTILHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K+ K GT++TF+PDP+IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGMPATGLNKKGKTKKTGTKVTFKPDPEIFKA 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 180 TTSFNFDVLSERLQESAFLLKNLKITLTDLRSGKERE-----EVYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ + V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLHDVTTFSGL----ANNIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA ++ ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G ++++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA ++ +K+ ++ K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGK----GFTLQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIESHVEF 636 >gi|15839377|ref|NP_334414.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551] gi|308232616|ref|ZP_07416630.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001] gi|308369281|ref|ZP_07417160.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002] gi|308370291|ref|ZP_07420933.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003] gi|308371557|ref|ZP_07425301.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004] gi|308375038|ref|ZP_07442451.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007] gi|308379671|ref|ZP_07487073.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010] gi|308380869|ref|ZP_07491290.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011] gi|308406291|ref|ZP_07495844.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012] gi|13879046|gb|AAK44228.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551] gi|308213443|gb|EFO72842.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001] gi|308328160|gb|EFP17011.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002] gi|308332534|gb|EFP21385.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003] gi|308336277|gb|EFP25128.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004] gi|308347679|gb|EFP36530.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007] gi|308356307|gb|EFP45158.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010] gi|308360194|gb|EFP49045.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011] gi|308363881|gb|EFP52732.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012] Length = 686 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 13 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 73 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 304 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLD 685 >gi|293366680|ref|ZP_06613356.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus epidermidis M23864:W2(grey)] gi|38604846|sp|Q8CSN9|PARE_STAES RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|84029387|sp|Q5HPI6|PARE_STAEQ RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|291318981|gb|EFE59351.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus epidermidis M23864:W2(grey)] Length = 664 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 180 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 235 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 291 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 351 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 411 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 530 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 531 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 586 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 587 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 636 >gi|254233410|ref|ZP_04926736.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C] gi|124603203|gb|EAY61478.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C] Length = 686 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 13 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 73 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 304 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 660 SILMGEDVDARRTFITRNAKDVRFLD 685 >gi|282876210|ref|ZP_06285077.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135] gi|281295235|gb|EFA87762.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135] gi|329735876|gb|EGG72155.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU028] Length = 666 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINQDGSISIEDNGRGMPTGIH--VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638 >gi|239930170|ref|ZP_04687123.1| DNA gyrase subunit B [Streptomyces ghanaensis ATCC 14672] Length = 687 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 253/684 (36%), Positives = 376/684 (54%), Gaps = 25/684 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + IP + + A+ +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 10 ADSGNPNENIPSTDTGVDSEATASYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 69 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AGYA+ I+V++ +G + VVDNGRGIPV P K +E++LT LHA Sbjct: 70 EVVDNSVDEALAGYADTIDVTILDDGGIRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 128 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL K E Sbjct: 129 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 188 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------- 251 GT +TF DP IF + L + Q A+L+ ++ + ++E Sbjct: 189 EE-TGTSVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGAD 246 Query: 252 ---AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 ++ + +++ GG+ +++ + + ++E A+ W Sbjct: 247 EAGEDEKYEVKAVSYHYEGGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQW 306 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + S+ N I T EGGTHE G R ALT I KYA + + ++ DD+ Sbjct: 307 NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREG 366 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + + + V+ + + + +L +NP EA ++ I Sbjct: 367 LTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAA 426 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 427 ATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 486 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A ++I NQ+I ++ A G + E LRY K+I+M DA Sbjct: 487 EYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERLRYHKIILMADA 546 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++E Sbjct: 547 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEM 606 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 ++ GK + + RFKGLGEM A +L+ T MD R L +V ++ D + Sbjct: 607 GRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSV 662 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R +FIQ A + + Sbjct: 663 LMGEDVEARRQFIQRNAKDVRFLD 686 >gi|27467954|ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228] gi|57866861|ref|YP_188504.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis RP62A] gi|27315499|gb|AAO04633.1|AE016747_130 topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228] gi|57637519|gb|AAW54307.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis RP62A] gi|329725092|gb|EGG61586.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU144] gi|329736686|gb|EGG72952.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU045] Length = 666 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ +G +++ DNGRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VTINQDGSISIEDNGRGMPTGIH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I++Q F G + K K GT++TF+PD +IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKS 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + + E+ E +++ G+K ++ E Sbjct: 182 TTTFNFDILSERLQESAFLLKDLKITLTDLRSGKERE-----EIYHYEEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-DVTTFAGHSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + +YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA +E + + ++ K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGK----GFILQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV++ ++ S K + LMG K R ++I++ F Sbjct: 589 QLWETTMNPETRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIEKHVEF 638 >gi|227877545|ref|ZP_03995605.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256849618|ref|ZP_05555050.1| subunit B [Lactobacillus crispatus MV-1A-US] gi|227862844|gb|EEJ70303.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256713734|gb|EEU28723.1| subunit B [Lactobacillus crispatus MV-1A-US] Length = 654 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 247/668 (36%), Positives = 367/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IEV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + + F G +++ V ++ Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDSKKYFIDFDHGRVKDEMKQIGTVPLDE 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ + ++ ++ E + Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + F GG+K Y+ + + ++ + ++ G VE A+ + + ++ N Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA ++ + ++ +D+ I+SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +I++ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|70726555|ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435] gi|68447279|dbj|BAE04863.1| topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435] Length = 666 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 235/656 (35%), Positives = 358/656 (54%), Gaps = 31/656 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 S++Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY N Sbjct: 2 ATKNSNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+++ + +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHG Sbjct: 62 INVTINQDNSISIEDNGRGMPSGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS+ L V + R I+ Q F G + K K GT++TF+PDP+IF Sbjct: 120 VGASVVNALSEWLEVEIHRDGNIYKQSFKNGGVPASGLVKSGKTKKTGTKVTFKPDPEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F+ L + Q A+L +K + E+ + +++ G+K ++ Sbjct: 180 KATTTFNFETLSERLQESAFLLKNLKITLKDLRNGKERE-----DVYHYEEGIKEFVSYV 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + ++ ++ V+ A + ++ I S+ N + T +GGTHE G + Sbjct: 235 NEGKEVLHDVTMFTGA----SNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A+TR YA ++ ++ +D+ ++SV I E +F GQTK+KL + + Sbjct: 291 TAMTRVFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448 A+ V++ + D +YL + + L++ I+ + R RK RE R K Sbjct: 351 ARSAVDSVVSDKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTL 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I Sbjct: 411 LSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIF 470 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 471 KNEEINTIIHTIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQ 530 Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +F+ PPL+++ +G + YA ++ +K+ ++ K + R+KGLGEM Sbjct: 531 AGRVFIALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGK----GFMLQRYKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL+RV+I ++ S K + LMG K R ++I+ F Sbjct: 587 PEQLWETTMNPETRTLIRVQIEDEMRSSKR----VTTLMGDKVAPRREWIESHVEF 638 >gi|118470567|ref|YP_884428.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] gi|152032506|sp|A0QNE0|GYRB_MYCS2 RecName: Full=DNA gyrase subunit B gi|152032507|sp|P0C559|GYRB_MYCSM RecName: Full=DNA gyrase subunit B gi|118171854|gb|ABK72750.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 675 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 250/686 (36%), Positives = 367/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A +A Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPVE H T+++++T LHAGGKFD TY +SGG Sbjct: 62 ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L TV R + Q + R +P K+ + GT I F DP Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGGETKETGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF ++ + + Q A+L+ + + ++ AE+ Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL Y++ ++ I I + G VE A+ W Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + +Y + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ + +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + + Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674 >gi|308234055|ref|ZP_07664792.1| DNA gyrase, B subunit [Atopobium vaginae DSM 15829] Length = 648 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 256/656 (39%), Positives = 367/656 (55%), Gaps = 26/656 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y + I++LEGL+PVR RPGMYIG T LHHL E++DN++DE +AGY I V + Sbjct: 6 SSYGGNEIKVLEGLDPVRKRPGMYIGTTSASGLHHLVWEIVDNSVDEAMAGYCTSINVIV 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V DNGRGIPVE HP+ TLE++LT LHAGGKFDN+ Y++SGGLHGVG+SV Sbjct: 66 HPDNSISVEDNGRGIPVEMHPQ-KKIPTLEVVLTILHAGGKFDNAAYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L V+R IF +F RG + + GT ITF PD IF Sbjct: 125 VNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSS-HTGTTITFWPDDTIFETTT- 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L Q A+L+ + + ++E P KEEF + GG+ +++ E ++ Sbjct: 183 YNFDTLHDRLQETAFLNKNLHISLTDEREE-----TPRKEEFCYSGGIVDFVKYLNEEKT 237 Query: 282 L----ISSEIFTGKTEKKG--THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 + G + RG VE +I W E S+ N I TDEGG H G Sbjct: 238 ILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALT+ I YA + ++ ++ DD+ I+SV + +P+F GQTK KL S Sbjct: 298 RSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYM 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPG 451 + + YL ++P +A ++ + + ++ RL ++ R+V R+ + LPG Sbjct: 358 RTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADCS A TELFIVEGDSAGGSAK AR+RS QAVLPLRGKILNV ++ +++ Sbjct: 418 KLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ A+G ++ E RY K++IMTDADVDGAHI LLLTFFY+ M L++ + Sbjct: 478 SITSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGY 537 Query: 572 LFLISPPLFRITQGTKSVY--AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL++I K + +E LE + K + R+KGLGEM QL Sbjct: 538 IYVAQPPLYQIKAKGKKYGKYLYTDEEL--ALEAKQFEDSSKYSVQRYKGLGEMDPEQLW 595 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R +LRV ++ ++ + ++ LMGT+ ++R FIQ A + + Sbjct: 596 STTMEPKNRIMLRVTVDD----AREAERAVANLMGTQVEKRKDFIQTHAKDVRFLD 647 >gi|262046286|ref|ZP_06019249.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US] gi|295691867|ref|YP_003600477.1| DNA gyrase, b subunit [Lactobacillus crispatus ST1] gi|312977114|ref|ZP_07788863.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05] gi|260573616|gb|EEX30173.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US] gi|295029973|emb|CBL49452.1| DNA gyrase, B subunit [Lactobacillus crispatus ST1] gi|310896442|gb|EFQ45507.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05] Length = 654 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 247/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IEV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V ++ Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ + ++ ++ E + Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + F GG+K Y+ + + ++ + ++ G VE A+ + + ++ N Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA ++ + ++ +D+ I+SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +I++ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|254417729|ref|ZP_05031453.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3] gi|196183906|gb|EDX78882.1| DNA topoisomerase IV, B subunit [Brevundimonas sp. BAL3] Length = 699 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 357/708 (50%), Positives = 466/708 (65%), Gaps = 33/708 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKL-----------------KKSGEIPDSPAFANQSASDN 43 M DD F P + + K + A + Sbjct: 1 MADDLF-AFDDTPEAPKPEAPKPVAVTPPQAAPAPAPKPVPTPVAAAPTAPAPTAGAQNA 59 Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y ASSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD Sbjct: 60 YSASSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVARHAKLITVELDA 119 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G+L+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF YE SGGLHGVG+SVVN Sbjct: 120 DGYLSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVVN 179 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L VTV R + Q FSRG L P+++ + R RGT+I F+PD +IFG A F Sbjct: 180 ALSEHLDVTVWRDGFEWKQSFSRGNVLGPIQQVQPSRK-RGTQIRFKPDDEIFGMGAAFK 238 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ARL +M +SKAYL V+ W+C E P + +FPGGL L ++ + Sbjct: 239 PARLFRMARSKAYLFRGVEIKWTCAPERITDA-TPTQALLHFPGGLADALIDRIGELETV 297 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVAL 338 + F G+ E++G G EWA+ W E + I SYCNT+ T +GGTHE+G R AL Sbjct: 298 TP-TFAGRAERQGEA-GAFEWAVTWSPIGFGEADGFIQSYCNTVSTPDGGTHEAGFRAAL 355 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +G+K Y ELT KRA I ++D+ +A ++SVFIR PEF GQTK +L S + R VE Sbjct: 356 VKGLKSYGELTNEKRAAIITAEDVTANAGALISVFIRNPEFQGQTKDRLSSPEGARLVEQ 415 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 LRDP DH+L ++P +A LL +V++R+E+RLRRRK +EV R A RKLRLPGKL+DCS+ Sbjct: 416 LLRDPLDHWLTESPKQANALLGFVVDRAEDRLRRRKDKEVQRAAATRKLRLPGKLSDCSR 475 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 A GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVASA ++K+R N ++ DL Sbjct: 476 QSAQGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRQNIELSDLAL 535 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + +++ +DLRYE+++IMTDADVDGAHIA+LL+TFFY+ M + I Q +F+ PP Sbjct: 536 ALGVQPGNRFNIDDLRYERIVIMTDADVDGAHIAALLITFFYRVMPETIRQGRVFMALPP 595 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI+ G S YA D+ H+ ++L K K EI RFKGLGEM+ASQLKET MD KR Sbjct: 596 LYRISAGPLSEYARDDAHRDELLATVFK--GKKTEIGRFKGLGEMMASQLKETTMDPKKR 653 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI-DDVG 685 TL R+ + S++D + +LMG +AD RF+FIQE A F+ +D+ Sbjct: 654 TLARITVPDAETSVED---LVERLMGKRADARFQFIQENAQFVKEDLD 698 >gi|116617179|ref|YP_817550.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096026|gb|ABJ61177.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 672 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 22/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + + +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 28 ASTVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 87 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SGG Sbjct: 88 ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 146 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS +L V V R N ++ F G + + E+ +RGT + F+PD Sbjct: 147 LHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPD 206 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + ++ LL + A+L+ ++ + + P KE F+F GG+K Y Sbjct: 207 TDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESFHFEGGIKEY 261 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 +Q E++ +I E + E+ G VE A+ + + + ++ N I T EGGTHE Sbjct: 262 VQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 318 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G + ALTR I YA + + S+ +D+ I+S+ +P+F GQTKTKL + Sbjct: 319 TGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 378 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448 DA++ + + F ++++NP A +++E + + RL ++ RE+ +++ + Sbjct: 379 SDARQATDRMFSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGN 438 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A E++ Sbjct: 439 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVL 498 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + E Y KVIIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 499 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 558 Query: 569 QKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + Y +E + L + + K K + R+KGLGEM Sbjct: 559 AGYIYIAQPPLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPK--VQRYKGLGEMDYD 616 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MDA R LLRV D ++ + I+ LMG R KFI++ A F++++ Sbjct: 617 QLADTTMDAQNRRLLRV----DPADAEEAEAVIDMLMGGDVPPRRKFIEDNAVFVENLD 671 >gi|319937326|ref|ZP_08011733.1| DNA topoisomerase parE [Coprobacillus sp. 29_1] gi|319807692|gb|EFW04285.1| DNA topoisomerase parE [Coprobacillus sp. 29_1] Length = 642 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 359/653 (54%), Gaps = 34/653 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD S+I+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ N I V Sbjct: 2 KSNHYDESNIQILEGLEAVRKRPGMYIGSTDYRGLHHLVWEIVDNAIDESLAGFGNKITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVG 158 ++ + + V D GRG+P H K T E+ILT LHAGGKF ++ Y+ SGGLHGVG Sbjct: 62 TIGSDNTIKVEDEGRGMPTGLH--ASGKPTTEVILTILHAGGKFSEDGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L VTV R I QKF G + K N+ GT I F+P+ +IF Sbjct: 120 SSVVNALSEWLEVTVYRDGKIHQQKFEDGAKIISPLKVIGKTNRTGTTIHFKPNKEIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ + + + + A+L ++ ++ + E F + GL+ ++ Sbjct: 180 -IDFNYSTICERLRESAFLLKGIEMIVIDER-------TGKHETFQYENGLEAFIDYLNY 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVA 337 + ++ + ++ VE A + E E + N + T +GGTHE+G R Sbjct: 232 EKKVLHKTVSF----DDESNPIEVEIAFQFTEGYQENLISFVNLVRTGDGGTHETGFRSG 287 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + ++ D+ GI+SV I E +F GQTK+KL S +A+ Sbjct: 288 FTKVFNEYARKYGLLKTKDKNLEGADVREGLTGIISVKIPESLLQFEGQTKSKLGSPEAR 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--G 451 VEN + + +++L +N A +L+ +I+ ++ R RK RE RK K+ G Sbjct: 348 NIVENVVYEQINYFLEENKDVANQLVNKMIKAAQARNAARKAREEARKGKGNKVEKILSG 407 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I N+ Sbjct: 408 KLAPAQSKDKKKKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNE 467 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + +D Y KVIIMTDAD DGAHI LLLTFFY+ M LI+ Sbjct: 468 EISTIINTVGAGVGADFNADDSNYAKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGR 527 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++ S+YA D++ + ++ + + R+KGLGEM A Q Sbjct: 528 VYIAMPPLYKVSKKNGKHEDSLYAWDDDELEDAKKKIGR----GYGVQRYKGLGEMNADQ 583 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ RTL++V I + ++ LMG K + R ++I++ F Sbjct: 584 LWETTMNPETRTLIQVSIED----AALVERRVSVLMGDKVEPRREWIEDNVQF 632 >gi|257887681|ref|ZP_05667334.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733] gi|257896175|ref|ZP_05675828.1| gram positive topoisomerase IV [Enterococcus faecium Com12] gi|257823735|gb|EEV50667.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733] gi|257832740|gb|EEV59161.1| gram positive topoisomerase IV [Enterococcus faecium Com12] Length = 665 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 244/642 (38%), Positives = 350/642 (54%), Gaps = 33/642 (5%) Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 +EGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I+V++ + +TV D Sbjct: 1 MEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVAD 60 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 +GRG+PV H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V Sbjct: 61 SGRGMPVGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLTV 118 Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 T+ R + QKF G P L+K K + GT + F PD IF F L + Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIFSTT-KFSYEILAER 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L VK S + P KE F++ G+K ++ E + ++ + Sbjct: 178 LRESAFLLKGVKISLSDLR-----GEEPVKEVFHYEEGIKEFVDYLNEEKDTLTPVV-YF 231 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 EK+G VE A + + E S+ N + T +GGTHE+G++ A+T+ +YA Sbjct: 232 SGEKEGI---EVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKV 288 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405 +R ++ D +LS+ + E +F GQTK KL + A+ V+N + + Sbjct: 289 GLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMG 348 Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAH 462 YL +N + L+ I+ E R RK RE +R RK L GKL Sbjct: 349 FYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPK 408 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G Sbjct: 409 KNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGA 468 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 ++ ED Y+KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++ Sbjct: 469 GVGPEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKV 528 Query: 583 TQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 ++G + + YA ++ ++++ K + R+KGLGEM A QL ET MD R Sbjct: 529 SKGQGKKQVIEYAWTDDELAAMIKKVGK----GYMLQRYKGLGEMNAEQLWETTMDPTSR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 TL+RV I+ + + LMG K + R K+I+ F Sbjct: 585 TLIRVRIDD----AAQAERRVTTLMGDKVEPRRKWIENHVQF 622 >gi|312874887|ref|ZP_07734906.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b] gi|311089632|gb|EFQ48057.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b] Length = 653 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + ++ Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+ Sbjct: 11 ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IE++++ +G +TV D+GRGIPV+ K +S LE + T LHAGGKF Y++SGG Sbjct: 71 ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 LHGVG SVVNALS +L+V V R + F+ G + + +V + GT + F PD Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF + FD L + A+L+ +K ++ ++ EK+ ++F GG+K Y Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + ++ + + G VE ++ + + ++ N I T EGG HE Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 SG + ALTR + YA + + ++ +D+ ++S+ P+F GQTKTKL + Sbjct: 302 SGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 DA+ V+ A D F +L++NP K++E + +R + +K+ + Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ+I + ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M +I+ Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG Y +E L + K + R+KGLGEM QL Sbjct: 542 AGYVYIARPPLYQVRQGKIIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET M+ R L RV D +D +++ LMG + R +FI++ A +++++ Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653 >gi|259500773|ref|ZP_05743675.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners DSM 13335] gi|302190776|ref|ZP_07267030.1| DNA gyrase, B subunit [Lactobacillus iners AB-1] gi|309804063|ref|ZP_07698144.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d] gi|309805911|ref|ZP_07699943.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b] gi|309807813|ref|ZP_07701745.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a] gi|312871188|ref|ZP_07731286.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a] gi|312873296|ref|ZP_07733351.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d] gi|315654135|ref|ZP_07907051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners ATCC 55195] gi|325912201|ref|ZP_08174598.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D] gi|325913628|ref|ZP_08175990.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B] gi|329919730|ref|ZP_08276681.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G] gi|259167467|gb|EEW51962.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners DSM 13335] gi|308163831|gb|EFO66097.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d] gi|308167687|gb|EFO69834.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b] gi|308168915|gb|EFO71001.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a] gi|311091176|gb|EFQ49565.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d] gi|311093202|gb|EFQ51548.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a] gi|315488831|gb|EFU78477.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners ATCC 55195] gi|325475860|gb|EGC79029.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D] gi|325476987|gb|EGC80137.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B] gi|328937077|gb|EGG33505.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G] Length = 653 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + ++ Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+ Sbjct: 11 ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IE++++ +G +TV D+GRGIPV+ K +S LE + T LHAGGKF Y++SGG Sbjct: 71 ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 LHGVG SVVNALS +L+V V R + F+ G + + +V + GT + F PD Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF + FD L + A+L+ +K ++ ++ EK+ ++F GG+K Y Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + ++ + + G VE ++ + + ++ N I T EGG HE Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 SG + ALTR + YA + + ++ +D+ ++S+ P+F GQTKTKL + Sbjct: 302 SGFKTALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 DA+ V+ A D F +L++NP K++E + +R + +K+ + Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ+I + ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M +I+ Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG Y +E L + K + R+KGLGEM QL Sbjct: 542 AGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET M+ R L RV D +D +++ LMG + R +FI++ A +++++ Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653 >gi|71903356|ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180] gi|71802451|gb|AAX71804.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180] Length = 650 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 372/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|293380895|ref|ZP_06626931.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1] gi|290922568|gb|EFD99534.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1] Length = 654 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 247/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IEV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V ++ Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ + ++ ++ E + Sbjct: 181 HGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRK-----DTAETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + F GG+K Y+ + + ++ + ++ G VE A+ + + ++ N Sbjct: 236 YKFEGGIKEYVAFLNKGQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA ++ + ++ +D+ I+SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +I++ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPS--PKPTVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVSPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|184153407|ref|YP_001841748.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri JCM 1112] gi|183224751|dbj|BAG25268.1| topoisomerase IV B subunit [Lactobacillus reuteri JCM 1112] Length = 669 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 364/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I + ++ Sbjct: 8 YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINIIIEA 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF + Y+ SGGLHGVG SVV Sbjct: 68 DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + + F G P+ L+K K + + GT ++F+PDPKIF Sbjct: 126 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + EK ++ F F G++ ++ E + Sbjct: 185 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 ++ ++ G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 240 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL +L+A++ V Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G YA E K+ ++ K ++ RFKGLGEM A QL Sbjct: 536 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL++V I + + + LMG K + R ++I+E F Sbjct: 592 ETTMNPDTRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 638 >gi|259503381|ref|ZP_05746283.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM 16041] gi|259168677|gb|EEW53172.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM 16041] Length = 663 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 358/651 (54%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD SSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I V+++ Sbjct: 13 YDESSIQVLKGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALSGYGDEINVTIEA 72 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 73 DNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGVGASVV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + +KF G P+ L+K K R GT +TF+PDP IF Sbjct: 131 NALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRVDSGTTVTFKPDPAIFTTTT- 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + E+ + F F G++ ++ E + Sbjct: 190 YDYNTLANRLRESAFLLKGIKIVLADKRPGQEQENV-----FQFDDGIQEFVSYLNEGKD 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + + +G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 245 TLGK-TLYFDGKDQGV---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHEAGFRSAWTK 300 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 301 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVVSVRIPERLLQFEGQTKDKLGTPEARKIV 360 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 361 DTVVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 420 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 421 TPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 480 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 481 NTIIYTVGAGAGSEFDVDDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVY 540 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ QG K YA E K+ + K ++ RFKGLGEM A QL Sbjct: 541 IALPPLYRLQQGKGAKTKITYAWTNEELTKLTKRMGKTA----QLQRFKGLGEMNADQLW 596 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I + + + LMG K + R ++I+E F Sbjct: 597 ETTMNPETRTLIRVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643 >gi|193216997|ref|YP_002000239.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1] gi|193002320|gb|ACF07535.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1] Length = 647 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 261/661 (39%), Positives = 367/661 (55%), Gaps = 25/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Q Y A +I++LEGLE VR RPGMYIG + LHHL E++DN++DE +AG+A Sbjct: 1 MSKQEEISKYGAKNIQVLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV L N + V+DNGRG+PV+ HP KS +E ILT LHAGGKFD++ Y++SGGL Sbjct: 61 TNIEVKLHPNNEIEVIDNGRGMPVDIHP-TTKKSAVETILTVLHAGGKFDSTNYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKV-RNKRGTRITFRPD 212 HGVG SVVNALSD V V R ++ QK+ + G P+ PLE +V +++ GTRI F PD Sbjct: 120 HGVGASVVNALSDSFEVWVKRGGKLYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +I FD ++ + AYL+ + E F F GG+ Y Sbjct: 180 YQIMDKV-AFDFGTIIDHAKQIAYLNKGLSIS-------CEDITKNTIRNFCFEGGIIDY 231 Query: 273 LQTKLENRSLISSEIFTGKT----EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + + +I +I + + V AI + E I SY N I T EG Sbjct: 232 VSELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEG 291 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G ALTR KYAE + + + +D V I+S+ +P F GQTK Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AI 444 KL + DA+ + + + Y+ +NP A ++E + RL RE +RK Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS A ELFIVEG+SAGGSAK R+R+ QA+LPLRGKI+N Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 + +N+++ ++ ALG ++ L+Y K++IMTDADVDGAHIA+LLLTFFY+ M Sbjct: 472 TSVMSNKEVSSMIHALGTGITDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMR 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 LIE +++ PPL++I+ + YA+++ K++IL + I I R+KGLGEM Sbjct: 532 PLIEYGFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKL--EDSKNISIQRYKGLGEMD 589 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET M+ R +L+V+I+ + + LMG + + R FIQE A + ++ Sbjct: 590 PEQLWETTMNPATRKMLQVQIDD----IASCDTIFSTLMGEEIEPRHDFIQENAKYATNI 645 Query: 685 G 685 Sbjct: 646 D 646 >gi|148544013|ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016] gi|227364928|ref|ZP_03848972.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3] gi|325682449|ref|ZP_08161966.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri MM4-1A] gi|148531047|gb|ABQ83046.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016] gi|227070032|gb|EEI08411.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3] gi|324978288|gb|EGC15238.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri MM4-1A] Length = 674 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 364/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++L+GLE VR RPGMYIG TD + LHHL E++DNA+DE ++GY + I + ++ Sbjct: 13 YDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINIIIEA 72 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF + Y+ SGGLHGVG SVV Sbjct: 73 DNAITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVV 130 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L +T+ R + + + F G P+ L+K K + + GT ++F+PDPKIF Sbjct: 131 NALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIFSTTV- 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + A+L +K + + EK ++ F F G++ ++ E + Sbjct: 190 YDYNTLANRLRESAFLLKGIKITLTDKRAGQEK-----QDVFQFADGIQEFVSYLNEGKD 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 ++ ++ G VE A + + E S+ N + T +GGTHE+G R A T+ Sbjct: 245 VLGK-TLYFDGKQDGV---EVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 300 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA+ + ++ D+ ++SV I E +F GQTK KL +L+A++ V Sbjct: 301 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 360 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + ++ L++N A L+ ++ E R RK R R + L GKL Sbjct: 361 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 420 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 421 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 480 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G S++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 481 NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIY 540 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G YA E K+ ++ K ++ RFKGLGEM A QL Sbjct: 541 IALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMGKGA----QLQRFKGLGEMNADQLW 596 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ + RTL++V I + + + LMG K + R ++I+E F Sbjct: 597 ETTMNPDTRTLIQVRIED----AELAERRVTTLMGNKVEPRREWIEENVQF 643 >gi|312872743|ref|ZP_07732808.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091785|gb|EFQ50164.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1] Length = 653 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 371/658 (56%), Gaps = 20/658 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + ++ Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+ Sbjct: 11 ALNFEKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTSIQGLHHLVWEIIDNSIDEKLAGF 70 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IE++++ +G +TV D+GRGIPV+ K +S LE + T LHAGGKF Y++SGG Sbjct: 71 ATKIEITVNEDGSVTVEDDGRGIPVDIQKK-TGRSALETVFTVLHAGGKFGGGGYKVSGG 129 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 LHGVG SVVNALS +L+V V R + F+ G + + +V + GT + F PD Sbjct: 130 LHGVGASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPD 189 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF + FD L + A+L+ +K ++ ++ EK+ ++F GG+K Y Sbjct: 190 PDIFTETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKN-----TAEKDIYHFEGGIKEY 244 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + ++ + + G VE ++ + + ++ N I T EGG HE Sbjct: 245 VSFLNQKEQVLFEPPVYVEGDYDGI---NVEASLQYITGYKSTLLTFANNIHTYEGGMHE 301 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 SG + ALTR + YA + + ++ +D+ ++S+ P+F GQTKTKL + Sbjct: 302 SGFKAALTRVVNDYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGN 361 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLR 448 DA+ V+ A D F +L++NP K++E + +R + +K+ + Sbjct: 362 SDARAAVDKAFSDTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIAN 421 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++I Sbjct: 422 LPGKLADNTSNDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRIL 481 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ+I + ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M +I+ Sbjct: 482 ANQEIRTIFTALGTGFGADFDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIK 541 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+++ QG Y +E L + K + R+KGLGEM QL Sbjct: 542 AGYVYIARPPLYQVRQGKIIKYLDTDEELHDYLGTLQPS--PKPIVQRYKGLGEMDPEQL 599 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET M+ R L RV D +D +++ LMG + R +FI++ A +++++ Sbjct: 600 WETTMNPENRRLDRV----DPEDAEDAEEAFEMLMGNEVGPRREFIEQNAKYVENLDA 653 >gi|219668703|ref|YP_002459138.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense DCB-2] gi|219538963|gb|ACL20702.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense DCB-2] Length = 638 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A SI++LEGLE VR RPGMYIG T K LHH E+IDNA+DE AG+ IEV+L+ Sbjct: 7 YNAESIQVLEGLEAVRKRPGMYIGSTGSKGLHHCAWEIIDNAIDEAGAGFCTRIEVTLNP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G LTV+DNGRG+P++ HP + + LHAGGKFD +Y+ SGGLHGVG SVVN Sbjct: 67 DGSLTVLDNGRGVPIDIHP-VKQIPAVRLAFEQLHAGGKFDGQSYKTSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 ALS L V V+R+ IF ++ G S L+ +K GT++TF+PDP IF + F Sbjct: 126 ALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDPLIFKETTSF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L A+L+ + + ++ E F G+ +++ + Sbjct: 186 KFDTLRSRLMELAFLNPGLTIVLTDQRK------ETRSETFQSKNGVIGFVEHLNKESDY 239 Query: 283 I--SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339 + K EK VE AI + + E+ + SY N I TDEGGTHESG R ALT Sbjct: 240 NPVHKKPIFFKGEKDEVI---VECAIQYTDGEDEHLRSYVNNIPTDEGGTHESGFRTALT 296 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + Y + K+ S+I DDL +LSV +REP+F GQTKTKL + + + V++ Sbjct: 297 KVFNAYGKKNNIFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVVQS 356 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + QNP A + + ERL ++ +E + L GKLA CS Sbjct: 357 LTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAACS 416 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + + ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A +K+ N++I ++ Sbjct: 417 EKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRSMI 476 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G ++ + Y +V IMTDAD+DGAHI LLLTFFY+ M LI +++ Sbjct: 477 TAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYIAQA 536 Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PL+++ +G YA+DE + L+E K K + R+KGLGEM QL ET ++ Sbjct: 537 PLYKVEKEKGKVVRYAYDEGELKDALKELGKSAK----LQRYKGLGEMNPEQLWETTLNP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 R +++V I+ L + + + LMG + D R +F+ E F +D Sbjct: 593 VNRRMIQVTIDDAL----EAERKLKILMGEQVDPRREFLMENIVFTED 636 >gi|157692485|ref|YP_001486947.1| DNA topoisomerase IV subunit B [Bacillus pumilus SAFR-032] gi|157681243|gb|ABV62387.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus SAFR-032] Length = 655 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 250/651 (38%), Positives = 366/651 (56%), Gaps = 36/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AG+ + I V + Sbjct: 8 DYNDDSIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEVLAGHGDHIVVKIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T EIILT LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDKGRGMPTGMHK--LGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R I+ Q+F G P++ LEK K + GT I F+PD +F Sbjct: 126 NALSEWLTVTIERDGYIYHQRFENGGKPVTSLEKVGKTKK-TGTLIHFKPDRSMFSVTT- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K ++ +E FY+ G++ ++ E + Sbjct: 184 YNFDTLSERLRESAFLLKGLKIELIDERHDV-------QETFYYETGIEAFVAYLNEEKD 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ SE+ + + E V++A + + I S+ N + T +GGTHESG + A+TR Sbjct: 237 VL-SEVVSFEGE---HQSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTR 292 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ V Sbjct: 293 AFNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 + + + ++L +N AT L+ I+ + R R+ RE R RK L GKL Sbjct: 353 DAVISEKLAYFLEENRETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 413 TPAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A+G + ED+ Y+K++IMTDAD DGAHI LLLTFFY+ M LIE +F Sbjct: 473 NTIIHAIGGGVGVDFNVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 574 LISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++++G K V YA +E +L++ K I R+KGLGEM A QL Sbjct: 533 IALPPLYKVSKGSGKKEVIEYAWSDEEMDDVLKKVGK----GYTIQRYKGLGEMNADQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 589 ETTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|308173787|ref|YP_003920492.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] gi|307606651|emb|CBI43022.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] gi|328553288|gb|AEB23780.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens TA208] gi|328911925|gb|AEB63521.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3] Length = 655 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 245/650 (37%), Positives = 363/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AGY + I V++ Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R ++ Q+F G +K K GT F+PDP +F + Sbjct: 126 NALSEWLTVTIERDGHVYKQRFENGGKPVTSLEKIGTTKKTGTLTHFKPDPSMFSATV-Y 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K ++ + E FY+ G++ ++ E + Sbjct: 185 NFDTLSERLRESAFLLKGLKIELIDERNDVK-------EVFYYENGIEAFVAYLNEEKDA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E+ + + E H V++A + + + S+ N + T +GGTHESG + A+TR Sbjct: 238 LC-EVVSFEGE---HHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ + Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + ED+ Y+K+IIMTDAD DGAHI LLLTFFY+ M LIEQ +F+ Sbjct: 474 TIIHAIGGGVGADFEIEDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVFI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL E Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDGVLKKVGK----GYTIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|291438512|ref|ZP_06577902.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672] gi|291341407|gb|EFE68363.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672] Length = 679 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 253/684 (36%), Positives = 376/684 (54%), Gaps = 25/684 (3%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ + IP + + A+ +Y+AS+I +LEGL+ VR RPGMYIG T E+ LHHL Sbjct: 2 ADSGNPNENIPSTDTGVDSEATASYNASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQ 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AGYA+ I+V++ +G + VVDNGRGIPV P K +E++LT LHA Sbjct: 62 EVVDNSVDEALAGYADTIDVTILDDGGIRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL K E Sbjct: 121 GGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAKHEAT 180 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------- 251 GT +TF DP IF + L + Q A+L+ ++ + ++E Sbjct: 181 EE-TGTSVTFWADPDIFET-TDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGAD 238 Query: 252 ---AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 ++ + +++ GG+ +++ + + ++E A+ W Sbjct: 239 EAGEDEKYEVKAVSYHYEGGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQW 298 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMIS 365 + S+ N I T EGGTHE G R ALT I KYA + + ++ DD+ Sbjct: 299 NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREG 358 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EP+F GQTKTKL + + + V+ + + + +L +NP EA ++ I Sbjct: 359 LTAIISVKLSEPQFEGQTKTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAA 418 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK RN Sbjct: 419 ATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNP 478 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A ++I NQ+I ++ A G + E LRY K+I+M DA Sbjct: 479 EYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVHEDFDIERLRYHKIILMADA 538 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEE 603 DVDG HI +LLLTF ++ M L+E H+FL PPL++I G YA+ + + ++E Sbjct: 539 DVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEM 598 Query: 604 FKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 ++ GK + + RFKGLGEM A +L+ T MD R L +V ++ D + Sbjct: 599 GRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDD----AAQADDLFSV 654 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R +FIQ A + + Sbjct: 655 LMGEDVEARRQFIQRNAKDVRFLD 678 >gi|240172095|ref|ZP_04750754.1| DNA gyrase subunit B [Mycobacterium kansasii ATCC 12478] Length = 675 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 62 AATVSVVLLEDGGVEVADDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + P+ K+ K GT + F DP Sbjct: 120 LHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMGL--KQGAPTKKTGTTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------------------ 249 +F +D + + Q A+L+ + + + Sbjct: 178 NVFET-TEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAEAPKSASEK 236 Query: 250 -EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + +K F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 237 AAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + ++ ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIARLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLD 674 >gi|170780469|ref|YP_001708801.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus] gi|169155037|emb|CAQ00133.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus] Length = 664 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 253/667 (37%), Positives = 376/667 (56%), Gaps = 18/667 (2%) Query: 28 EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMD 87 DS Q S++Y A+ I++LEGLE VR RPGMYIG T + LHHL SE++DN++D Sbjct: 6 THNDSDHITRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVSEIVDNSVD 65 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147 E +AG+A+ I++++ +G + VVD+GRGIPV+ HP ST+E++LT LHAGGKF Sbjct: 66 EALAGFASDIQITMRKDGGIRVVDDGRGIPVDIHP-VEGISTVELVLTKLHAGGKFGGGG 124 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207 Y +SGGLHGVG SVVNALS+ L V V RQ ++ Q F+ G+P +PLEK E GT I Sbjct: 125 YAVSGGLHGVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDAPLEKGEGSTE-TGTTI 183 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 TF P +IF FD L Q A+L+ + ++E E E+F + Sbjct: 184 TFWPSREIFET-VEFDYDTLRARFQQMAFLNKGLALTLHDERE--EDGAEHRTEKFLYER 240 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GL Y++ ++ + E + + ++E A+ W + +Y NTI T Sbjct: 241 GLVDYVEHLVKAKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTH 300 Query: 326 EGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTHE G R ALT + +YA + ++ ++ DD+ ++SV + EP+F GQT Sbjct: 301 EGGTHEEGFRAALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQT 360 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 KTKL + +A+ V+ + +L +NP +A ++ ++ S+ RL RK RE R+ Sbjct: 361 KTKLGNTEAKAYVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKG 420 Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + +PGKL DC +E+F+VEGDSAGGSA Q RN + QA+LPLRGKILNV A Sbjct: 421 LLESGGMPGKLKDCQSKDPAFSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKA 480 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++ N ++ ++ A G + E +RY K+++M DADVDG HI +LLLT ++ Sbjct: 481 RLDRALQNNEVQSMITAFGAGIGEDFNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRY 540 Query: 563 MYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFK 618 M LIE +++L PPL+R+ + Y + + + +L +++GK + I R+K Sbjct: 541 MRPLIELGYVYLAQPPLYRLKWSNAEDQYVYTDAERDALLIHGQQNGKKLPKDNGIQRYK 600 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM +L ET MD RTL++V ++ + + LMG + R FIQ A Sbjct: 601 GLGEMDYKELWETTMDPATRTLMQVTLDD----AAGADEVFSTLMGEDVESRRSFIQRNA 656 Query: 679 SFIDDVG 685 + + Sbjct: 657 KDVRFLD 663 >gi|218296312|ref|ZP_03497068.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23] gi|218243384|gb|EED09914.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23] Length = 641 Score = 589 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 368/649 (56%), Gaps = 29/649 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS+I++L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I +L+ Sbjct: 8 SYDASAIKVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEITTTLN 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV DNGRGIPV+ P+ K +E+I TTLH+GGKF++ Y++SGGLHGVG SVV Sbjct: 68 PDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFESGAYKVSGGLHGVGASVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ V V R FSRG PL+ + K GTR+TF+PDP+IFG+ Sbjct: 127 NALSEWTVVEVFRDGKHHRIAFSRGEVTEPLQVVGPTPKGKTGTRVTFKPDPQIFGN-LT 185 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD +++ + ++L ++ + E E F GG+ ++ + E Sbjct: 186 FDPSKIRARLKEVSFLVAGLRLVFKDLIHGRE-------EVFQDKGGVASFAKALAEGEE 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 L+ + F + ++ VE + EI +Y N I T +GGTH + + A +R Sbjct: 239 LLYEKPFLIRGQE---GEVEVEVGFIHTKGYTTEILTYANMIPTRDGGTHLTAFKAAYSR 295 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ ++ DDL+ ++SV + +P+F GQTK KL++ +A V Sbjct: 296 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGTAVGQ 355 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + L +NP A + + + R+ + V R+ + LPGKLADC Sbjct: 356 VVYEKLLEILEENPRIAKTVYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQ 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ +V Sbjct: 416 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 475 Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 A+G + + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE+ H+ Sbjct: 476 AAIGAGLSGTGEEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHV 535 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+R+ G K Y + +E + L+E + E+ RFKGLGEM QL ET Sbjct: 536 YIAQPPLYRLQVGKKVEYLYSDEELAQRLKELEG---KSYEVQRFKGLGEMNPEQLWETT 592 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 M+ KR L RVE+ L + + KLMG + R +FI+E A + Sbjct: 593 MNPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYA 637 >gi|19745973|ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS8232] gi|19748134|gb|AAL97608.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes MGAS8232] Length = 650 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 370/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|332188910|ref|ZP_08390613.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17] gi|332011050|gb|EGI53152.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17] Length = 659 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 350/648 (54%), Positives = 451/648 (69%), Gaps = 9/648 (1%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+AN IEV L+ Sbjct: 16 YDASSIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHANRIEVKLEP 75 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 LT+VDNGRGIPV+ HPKFP+KS LE+IL+TLH+GGKF Y SGGLHGVGISVVN Sbjct: 76 GNRLTIVDNGRGIPVDPHPKFPDKSALEVILSTLHSGGKFTGKAYATSGGLHGVGISVVN 135 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + V VAR+ ++ Q+F++G L PLE N+RGT + F PD +IFG + F Sbjct: 136 ALSSDTVVEVARERVLYRQRFAKGATLGPLETVGAAPNRRGTSVAFTPDSEIFGPELHFK 195 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 ARL K+ +SKAYL V+ W C E+ P F FPGGL +L+ ++ R Sbjct: 196 PARLHKLVRSKAYLFAGVEIRWHCAPELISDD-TPADAVFQFPGGLADHLKEQIGGRECA 254 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 +++ F+G + G +G VEWA+AW + + YCNTI T +GGTHE GLR AL RG+ Sbjct: 255 TADFFSGNQDFPGE-QGRVEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEQGLRQALVRGL 313 Query: 343 KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 + + EL K+A I +DD+M+ + +LSVFIREP+F QTK +L S +A VE A+RD Sbjct: 314 RAFGELVNQKKAKDITADDVMVGSELMLSVFIREPQFQSQTKDRLTSPEAAGLVEKAVRD 373 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADCSQNI 460 FDH+L N LL +V++R +ERLRR+ +REV RKTA RKLRLPGKL DCS + Sbjct: 374 HFDHFLSANMERGKALLGYVLDRMDERLRRKAEREVKRKTATSARKLRLPGKLTDCSADS 433 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 GTELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA S KI NQ+I DL A+ Sbjct: 434 PEGTELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATSAKILQNQEIADLTLAM 493 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC TR LRYEK++IMTDADVDGAHIA+LL+TFF+QEM DL+ + HL+L PPL+ Sbjct: 494 GCGTRKDCDPTQLRYEKIVIMTDADVDGAHIATLLMTFFFQEMPDLVRRGHLYLAQPPLY 553 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R+T G KS+YA D+ H+ + LE GK K++++RFKGLGEM QL+ET MD R+L Sbjct: 554 RLTVGAKSLYARDDSHRAE-LERTAFKGK-KVDVARFKGLGEMNPGQLRETTMDPATRSL 611 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD--VGT 686 +R+ + ++ +D +++LMG RF FIQE A+ +D+ + Sbjct: 612 IRITLPQEYEERAGVKDLVDRLMGNNPAHRFAFIQENAARLDEEVIDA 659 >gi|270293047|ref|ZP_06199258.1| DNA gyrase subunit B [Streptococcus sp. M143] gi|270279026|gb|EFA24872.1| DNA gyrase subunit B [Streptococcus sp. M143] Length = 648 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QSKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|293365094|ref|ZP_06611811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis ATCC 35037] gi|307702197|ref|ZP_07639157.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037] gi|322374607|ref|ZP_08049121.1| DNA gyrase, B subunit [Streptococcus sp. C300] gi|291316544|gb|EFE56980.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis ATCC 35037] gi|307624210|gb|EFO03187.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037] gi|321280107|gb|EFX57146.1| DNA gyrase, B subunit [Streptococcus sp. C300] Length = 648 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|41406103|ref|NP_958939.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463778|ref|YP_879308.1| DNA gyrase subunit B [Mycobacterium avium 104] gi|254773058|ref|ZP_05214574.1| DNA gyrase subunit B [Mycobacterium avium subsp. avium ATCC 25291] gi|13431552|sp|Q9L7L3|GYRB_MYCPA RecName: Full=DNA gyrase subunit B gi|6969273|gb|AAF33694.1| putative gyrB [Mycobacterium avium subsp. paratuberculosis] gi|41394451|gb|AAS02322.1| GyrB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165065|gb|ABK65962.1| DNA gyrase, B subunit [Mycobacterium avium 104] Length = 677 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 252/688 (36%), Positives = 369/688 (53%), Gaps = 49/688 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151 A+ ++V + +G + V DNGRGIPV H T+++++T LHAGGKF +NS Y +S Sbjct: 62 ADRVDVRILDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYNVS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L V +AR +SQ + +P + K+ + + GT I F Sbjct: 120 GGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTL--KQGEATKRTGTTIRFWA 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254 DP IF +D + + Q A+L+ + + ++ E+ Sbjct: 178 DPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQ 236 Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + F++PGGL +++ ++ I I + G VE A+ Sbjct: 237 EKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGH---EVEIAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601 DADVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +L Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLL 593 Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 E K GK KI I R+KGLGEM A +L ET MD R L +V ++ + Sbjct: 594 EAGLKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDD----AAAADE 648 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676 >gi|296535763|ref|ZP_06897924.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas cervicalis ATCC 49957] gi|296263831|gb|EFH10295.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas cervicalis ATCC 49957] Length = 691 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 358/681 (52%), Positives = 468/681 (68%), Gaps = 9/681 (1%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 PP G+ ++ A A +Y A I +LEGLEPVR RPGMYIGG Sbjct: 17 LPRPPPLRYGARRGCEQDMNDLFGGRGAKAQAGASYSAKDIEVLEGLEPVRRRPGMYIGG 76 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 TDE ALHHL +EVIDNAMDE +AG+A+ IEV+L+ + +LTV DNGRGIP + HPKFP S Sbjct: 77 TDENALHHLAAEVIDNAMDEAVAGHADRIEVTLEKDNWLTVRDNGRGIPTDPHPKFPKLS 136 Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188 LE+ILTTLH+GGKF Y+ SGGLHGVG SVVNALS+ L V VAR T+F+Q +SRG Sbjct: 137 ALEVILTTLHSGGKFSGKAYDTSGGLHGVGSSVVNALSERLEVEVARDRTLFTQAYSRGK 196 Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 PLS L+ V N+RGT I F+PDP+IFG + F AARL ++ +SKAYL V+ WSCD Sbjct: 197 PLSKLKNAGAVHNRRGTTIRFKPDPEIFGTQP-FLAARLFRLCRSKAYLFRGVEIRWSCD 255 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + K P + +FPGGL +L +ENR+ + + G++ G EWA+ W Sbjct: 256 PALV-KDDTPSQATLHFPGGLSDFLAAAVENRAPVIPAPWAGESTF-PQGAGRCEWAVTW 313 Query: 309 CEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAV 367 E+ Y NTI T +GGTHE+GLR AL +G++ Y EL + KRA +I ++D+ Sbjct: 314 LEQGEGFLHTYANTIPTPQGGTHEAGLRAALVKGLRAYGELKKEKRAAAITAEDVFGGLA 373 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427 G+LSVFIREP+F GQTK KL S +A + VE LRD FDH+L +P A LL W IER+E Sbjct: 374 GMLSVFIREPQFQGQTKDKLTSPEAAKLVEQGLRDHFDHWLAGDPAMAGNLLTWAIERAE 433 Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 ERLRRR+Q++ RK+A R+LRLPGKLADC++ A GTELF+VEGDSAGGSAKQAR+R Q Sbjct: 434 ERLRRREQKDTPRKSATRRLRLPGKLADCAREAADGTELFLVEGDSAGGSAKQARDRETQ 493 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 AVLPLRGKILNVASA ++K+R NQ++ DL++ALGC ++ LRY +V+IMTDADVD Sbjct: 494 AVLPLRGKILNVASASADKLRQNQELKDLIEALGCGAGDKFDLARLRYGRVVIMTDADVD 553 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHIA+LL+TFFY+E+ +L+ Q ++L PPL+R+ K++YA D+ ++K+L++ K Sbjct: 554 GAHIAALLMTFFYKELPELVRQGRVYLAQPPLYRLATPGKTLYAMDDAEREKLLKKAFKP 613 Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 G+ K+E+SRFKGLGEM + LKET MD KRTLLRV + + + T + I LMG K Sbjct: 614 GQ-KVEVSRFKGLGEMPPASLKETTMDPRKRTLLRVVLPPEERA--RTSELIEALMGRKP 670 Query: 668 DERFKFIQERA--SFIDDVGT 686 + RFKFIQ+ A +++V Sbjct: 671 ELRFKFIQDNAGKLDLEEVDA 691 >gi|169351628|ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552] gi|169291850|gb|EDS73983.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552] Length = 641 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 255/655 (38%), Positives = 371/655 (56%), Gaps = 19/655 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA Sbjct: 1 MSEEKVKHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L + + V+D+GRG+P H K ST+E I T LHAGGKF Y++SGGL Sbjct: 61 SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V V R ++ Q+F G K + GT +TF+ D Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHVYYQRFENGGQPVDKLKVVGDSDITGTIVTFKADKL 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + + A+L+ ++ + GI K+ +++ GG+K Y+ Sbjct: 180 IFKEGTVYDYDTLNQRIRELAFLNKGLRLSLEDQR-----NGINRKQVYHYEGGIKEYVS 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ I EI + T+E A+ + + I S+CN I T EGGTHE G Sbjct: 235 FINKNKTPIHEEIIYVE---DIQQDITIEVAMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R+ALTR I YA+ K ++ DD+ I+SV +P++ GQTKTKL + + Sbjct: 292 FRMALTRVINNYAKNKGLLKKDDETLSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 ++ N + D +L++NP A +++ I S R+ +K RE+ R+ + LP Sbjct: 352 VRKIASNIIATSLDKFLLENPDTAKIIVDKAIIASRARMAAKKAREMTRRKNPLEVSNLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+FIVEGDSAGGSAK R+R QA+LPLRGKILNV + EKI N Sbjct: 412 GKLADCSSKDPSECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ + LRY K++IMTDADVDG HI L+LTF Y+ + LIE Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ + G + Y + +E + + + K I R+KGLGEM A QL E Sbjct: 532 FVYAAQPPLYLLKHGKEEHYCYSDEELEDLKTKIG--SGAKYSIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD KR L ++++++ + + + LMG K + R +FIQE A ++ D+ Sbjct: 590 TTMDPQKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640 >gi|300857422|ref|YP_003782405.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|300684876|gb|ADK27798.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|302205162|gb|ADL09504.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis C231] gi|302329720|gb|ADL19914.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis 1002] gi|308275403|gb|ADO25302.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis I19] Length = 681 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 255/691 (36%), Positives = 371/691 (53%), Gaps = 57/691 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A ++ Sbjct: 3 TAEHEYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGHATHVD 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + VVDNGRGIPV+ H T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLEDGGVEVVDNGRGIPVDMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + + Q FS +P + GT I F PD +IF Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFSNAVPDEL--VQGGNARGTGTTIRFWPDAEIFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------------ 254 F + + Q A+L+ + + + E+ Sbjct: 179 TT-FKFDIIARRLQEMAFLNKGLTLSLTDKRVSDEELELEAIADEGDTAENVSLEKIDSD 237 Query: 255 -----------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 +K+ FY+P GLK Y+ +++ +I I + + VE Sbjct: 238 ADGNIEAPAAPKKREKKKVFYYPEGLKDYVAHLNKSKQVIHPTIVAFEAKGDDH---EVE 294 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 A+ W + ++ NTI T EGGTHE G R ALT + +YA + ++ ++ D Sbjct: 295 VAMQWNNGYAQSVHTFANTINTIEGGTHEEGFRAALTTLMNRYAREHRLLKEKESNLTGD 354 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D ++SV + +P+F GQTKTKL + + + V+ + + +L NP EA ++ Sbjct: 355 DCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVADWLDANPAEAKTIIN 414 Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 + + R+ RK R+ V RK+A LPGKLADC +EL++VEGDSAGGSAK Sbjct: 415 KAVSSAHARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSELYVVEGDSAGGSAK 474 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ LRY K++ Sbjct: 475 AGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYHKIV 534 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598 +M DADVDG+HIA+LLLT ++ M LIE+ H++L PPL+++ G +A+ + + Sbjct: 535 LMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGDPGFAYSDAERD 594 Query: 599 KILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 +LEE G+ KI I R+KGLGEM AS+L ET +D R L RV+IN + Sbjct: 595 SLLEEGLAQGR-KINKDDGIQRYKGLGEMNASELWETTLDPEFRVLRRVDIND----AQR 649 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI RA + + Sbjct: 650 ADEIFSILMGDDVAARRSFITRRAKDVRFLD 680 >gi|1226021|emb|CAA58884.1| DNA gyrase [Mycobacterium smegmatis] Length = 675 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 250/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A +A Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPVE H T+++++T LHAGGKFD TY +SGG Sbjct: 62 ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L TV R + Q + R +P K+ + + GT I F DP Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGRETKETGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF ++ + + Q A+L+ + + ++ AE+ Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL Y++ ++ I I + G VE A+ W Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + +Y + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ + +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + + Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674 >gi|331266709|ref|YP_004326339.1| DNA gyrase, B subunit [Streptococcus oralis Uo5] gi|326683381|emb|CBZ00999.1| DNA gyrase, B subunit [Streptococcus oralis Uo5] Length = 648 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|9622089|gb|AAF89615.1|AF167433_1 gyrase B [Thermus thermophilus] Length = 634 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 265/652 (40%), Positives = 367/652 (56%), Gaps = 29/652 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS+IR+L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I V L+ Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV DNGRGIPV+ P+ K +E+I TLH+GGKF+ Y++SGGLHGVG SVV Sbjct: 62 EDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ V V R+ FSRG PL + R K GTR+TF+PDP+IFG+ Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGN-LR 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD +++ + AYL +K + + E E F GG+ ++ + E Sbjct: 180 FDPSKIRARLREVAYLVAGLKLVFQDRQHGKE-------EVFLDKGGVASFAKALAEGED 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340 L+ + F + VE + EI +Y N I T +GGTH + + A +R Sbjct: 233 LLYEKPFLIRG---THGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ ++ DDL+ ++SV + P+F GQTK KL++ +A V Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQ 349 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + L +NP A + + + R+ + V R+ + LPGKLADC Sbjct: 350 VVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQ 409 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ +V Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469 Query: 518 QALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 A+G + + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE+ H++ Sbjct: 470 SAIGVAVGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ G K Y + +E Q L+E + E+ RFKGLGEM QL ET M Sbjct: 530 IAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKH---YEVQRFKGLGEMNPEQLWETTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + KR L RVE+ L + + KLMG + R +FI+E A + + + Sbjct: 587 NPEKRVLKRVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 633 >gi|1213062|emb|CAA63917.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] Length = 675 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 249/686 (36%), Positives = 367/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A +A Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AG+ Sbjct: 2 AAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGF 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V + +G + V D+GRGIPVE H T+++++T LHAGGKFD TY +SGG Sbjct: 62 ATRVDVKIHADGSVEVRDDGRGIPVEMH--ATGMPTIDVVMTQLHAGGKFDGETYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L TV R + Q + R +P K+ + GT I F DP Sbjct: 120 LHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVPGKL--KQGGETKETGTTIRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF ++ + + Q A+L+ + + ++ AE+ Sbjct: 178 EIFET-TDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 259 ----------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL Y++ ++ I I + G VE A+ W Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + +Y + + ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 LAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGK ADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKSADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ +++ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQSIIRALGTGIHDEFDISKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ + +A+ + + +LE Sbjct: 534 DVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GRAAGK-KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + + Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674 >gi|315612864|ref|ZP_07887775.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis ATCC 49296] gi|315314974|gb|EFU63015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis ATCC 49296] Length = 648 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 252/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVFIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTK-SVYAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEFKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|154686223|ref|YP_001421384.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens FZB42] gi|154352074|gb|ABS74153.1| ParE [Bacillus amyloliquefaciens FZB42] Length = 655 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 243/650 (37%), Positives = 362/650 (55%), Gaps = 34/650 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DN++DEV+AGY + I V++ Sbjct: 8 DYNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGYGDHIIVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 KDNSISVQDRGRGMPTGMHK--LGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VT+ R ++ Q+F G +K K GT F+PDP +F + Sbjct: 126 NALSEWLTVTIERDGYVYKQRFENGGKPVTSLEKIGTTKKTGTLTHFKPDPSMFSATV-Y 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K ++ + E FY+ G++ ++ E + Sbjct: 185 NFDTLSERLRESAFLLKGLKIELIDERNGVK-------EVFYYENGIEAFVAYLNEEKDA 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + E+ + + E H V++A + + + S+ N + T +GGTHESG + A+TR Sbjct: 238 LC-EVVSFEGE---HHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA ++ ++ D+ I+SV I E +F GQTK KL + +A+ + Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + ++L +N AT L++ I+ S+ R RK RE R RK L GKL Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + +D+ Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +F+ Sbjct: 474 TIIHAIGGGVGADFEIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K + YA +E +L++ K I R+KGLGEM A QL E Sbjct: 534 ALPPLYKVSKGSGKKEIIEYAWSDEEMDGVLKKVGK----GYTIQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ + + LMG K + R K+I++ +F Sbjct: 590 TTMNPESRTLVRVKIDD----AARVERRVTTLMGDKVEPRRKWIEKNVAF 635 >gi|33469296|gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus haemolyticus] Length = 658 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 234/651 (35%), Positives = 356/651 (54%), Gaps = 31/651 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY N I V++ Sbjct: 1 NHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGNEINVTI 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +++ DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 61 NQDNSISIEDNGRGMPSGMH--ASGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 118 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V + R I+ Q F G + K K GT++TF+PDP+IF Sbjct: 119 VNALSEWLEVEIHRDGNIYKQSFKNGGVPASGLVKSGKTKKTGTKVTFKPDPEIFKATTT 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + Q A+L +K + E+ + +++ G+K ++ E + Sbjct: 179 FNFETLSERLQESAFLLKNLKITLKDLRNGKERE-----DVYHYEEGIKEFVSYVNEGKE 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ ++ V+ A + ++ I S+ N + T +GGTHE G + A+TR Sbjct: 234 VLHDVTMFTGA----SNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 289 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA ++ ++ +D+ ++SV I E +F GQTK+KL + +A+ V Sbjct: 290 VFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKL 453 ++ + D YL + + L++ I+ + R RK RE R K L GKL Sbjct: 350 DSVVSDKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N++I Sbjct: 410 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G + ++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ +F Sbjct: 470 NTIIHTIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 529 Query: 574 LISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+++ +G + YA ++ +K+ ++ K + R+KGLGEM QL Sbjct: 530 IALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGK----GFMLQRYKGLGEMNPEQLW 585 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV+I ++ S K + LMG K R ++I+ F Sbjct: 586 ETTMNPETRTLIRVQIEDEMRSSKR----VTTLMGDKVAPRREWIESHVEF 632 >gi|139473931|ref|YP_001128647.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo] gi|134272178|emb|CAM30423.1| topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo] Length = 650 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 372/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARH 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|322411454|gb|EFY02362.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 650 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 256/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PD +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDSEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645 >gi|148821196|ref|YP_001285950.1| DNA gyrase subunit B [Mycobacterium tuberculosis F11] gi|148719723|gb|ABR04348.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis F11] Length = 714 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 253/686 (36%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 41 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 100 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 101 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGILTVDVVMTQLHAGGKFDSDAYAISGG 158 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 159 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 216 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 217 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 275 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE A+ W Sbjct: 276 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAMQW 332 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 333 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 392 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 393 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 452 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 453 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 512 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 513 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 572 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 573 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 632 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 633 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 687 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLD 713 >gi|94994199|ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750] gi|94547707|gb|ABF37753.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750] Length = 650 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 372/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|295425411|ref|ZP_06818109.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus amylolyticus DSM 11664] gi|295064913|gb|EFG55823.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus amylolyticus DSM 11664] Length = 653 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 246/654 (37%), Positives = 366/654 (55%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+A I Sbjct: 15 EKEADKYNASQIQVLGGLEAVRKRPGMYIGTTSSQGLHHLVWEIIDNSIDERLAGFATKI 74 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 E++++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGV Sbjct: 75 EITVNEDGSVTVQDDGRGIPVDIQAK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS +L VTV R + F G +++ V ++ GT + F PDP IF Sbjct: 134 GASVVNALSTKLDVTVVRDGKKYFIDFDHGRVKDEMKQIGTVPLDQHGTTVHFYPDPDIF 193 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ +K ++ ++ E + + + GG+K Y+ Sbjct: 194 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYLYEGGIKEYVAFL 248 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + ++ + + + G VE A+ + + ++ N I T EGG HE+G + Sbjct: 249 NRDTEVLFDDPIYVEGDYDGI---NVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 305 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL + DA+ Sbjct: 306 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 365 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V+ A + F +L++NP K++E + +R + +K+ + LPGK Sbjct: 366 TAVDKAFSETFSRFLMENPSVGRKIVEKAQLAERARTAAKRAREVTRKKSGLEIANLPGK 425 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEG+SAGGSAKQAR+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 426 LADNTSNDPSISELFIVEGNSAGGSAKQARSRLTQAILPIRGKILNVEKASMDRILANQE 485 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY M +IE+ ++ Sbjct: 486 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYV 545 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM QL +T Sbjct: 546 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDPEQLWDTT 603 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L RV KD + + LMG + R KFI+ A +++++ Sbjct: 604 MNPENRRLDRVSPEY----AKDADEVFDLLMGNEVAPRRKFIETNAKYVENLDA 653 >gi|94988398|ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429] gi|94992280|ref|YP_600379.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096] gi|94541906|gb|ABF31955.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429] gi|94545788|gb|ABF35835.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096] Length = 650 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 372/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|50914074|ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394] gi|50903148|gb|AAT86863.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394] Length = 650 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 371/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N + L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVTSHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|38232647|ref|NP_938414.1| DNA gyrase subunit B [Corynebacterium diphtheriae NCTC 13129] gi|38198905|emb|CAE48516.1| DNA gyrase subunit B [Corynebacterium diphtheriae] Length = 685 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 258/695 (37%), Positives = 375/695 (53%), Gaps = 57/695 (8%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +A Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA Sbjct: 3 ASVATAEHEYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V+L +G + VVDNGRGIPVE HP T+++++T LHAGGKFD+ +Y +SGGL Sbjct: 63 THVDVTLLADGGVEVVDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + + R + Q FS IP +E GT I F PD + Sbjct: 121 HGVGISVVNALSTRVEADIKRDGKHWLQNFSMAIPDPLVE--GGNARGTGTTIRFWPDAE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257 IF F + + Q A+L+ + + E+ + Sbjct: 179 IFETTT-FKFETISRRLQEMAFLNKGLTITLVDKRVTDEELELEAIAEEGDTAENVSLDQ 237 Query: 258 ------------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 +K+ F++P GLK Y+ +++ +I I + + Sbjct: 238 IDVDADGNIDAPAAPKKREKKKVFFYPDGLKDYVAHLNKSKQVIHPTIISFDAKGNDH-- 295 Query: 300 GTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA + ++ + Sbjct: 296 -EVEVAMQWNNSYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKEKEAN 354 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + DD ++SV + +P+F GQTKTKL + + + V+ + + +L NP EA Sbjct: 355 LTGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHIADWLDANPAEAK 414 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++ + + R+ RK R+ V RK+A LPGKLADC +EL+IVEGDSAG Sbjct: 415 TIINKAVSSAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAG 474 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + LRY Sbjct: 475 GSAKAGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDIKKLRY 534 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDE 594 K+++M DADVDG+HIA+LLLT ++ M LIE+ H++L PPL+++ G + +A+ + Sbjct: 535 HKIVLMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGEPGFAYSD 594 Query: 595 EHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 + +L E + KI I R+KGLGEM AS+L ET +D R L RV+I Sbjct: 595 AERDTLLAEGLAQNR-KINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITD--- 650 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + + LMG R FI RA + + Sbjct: 651 -AQRADEIFSILMGDDVSARRSFITRRAKDVRFLD 684 >gi|218133091|ref|ZP_03461895.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC 43243] gi|217991964|gb|EEC57968.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC 43243] Length = 640 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 354/656 (53%), Gaps = 26/656 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + YD SSI ILEGLE VR RPGMYIG K L+HL E+ DNA+DE +AG+ + I V Sbjct: 2 AGNKYDESSISILEGLEAVRKRPGMYIGSVGTKGLNHLIYEIADNAVDEHLAGFCSEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G T+ DNGRGIP HPK ST++++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 TLNADGSATIADNGRGIPTGIHPKA-GISTVDVVFTMLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGD 218 SVVNALS L VT+ R ++ Q++ +G L + R G+ ITF PD +IF Sbjct: 121 SVVNALSVWLEVTIKRDGIVWHQRYEKGRRTGELTQTGTCRKHDTGSTITFLPDGEIFEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F A + AYL+ + + + I + + E F+ G+K+Y++ E Sbjct: 181 TV-FKAEAIKSRLHETAYLNPGLTIHFEDKRHI--ETPGDDIETFHEEDGIKSYIKDLNE 237 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337 + I K +++G VE A + E E +CN I T EGGTH +G + Sbjct: 238 GKECIHDI-IYFKKKREGI---EVEAAFQFVNEFEENVLGFCNNIYTQEGGTHITGFKSK 293 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T I +YA + + D+ I++V EP F GQTKTKL + DA + Sbjct: 294 FTTIINQYARELGILKDKDANFTGLDVRNGMTAIIAVKHPEPRFEGQTKTKLDNPDAGKV 353 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V + + +N ++ + ++ R K + GKLA+ Sbjct: 354 VAEITGEELQLFFDKNLETLKSVIACAEKSAKIRKAEEKAKTNMLVKPKFSYDTNGKLAN 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 414 CESRNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKT 473 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ + GC + + LRY K+IIMTDADVDGAHI +LLLTFFY+ M +LI Q H Sbjct: 474 MITSFGCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGH 533 Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ +PPL++ I + + Y +D+ K LE+++K G + R+KGLGEM A QL E Sbjct: 534 VYIATPPLYKAIPKKGEEQYIYDD----KALEKYRKTHTGAFTLQRYKGLGEMDAQQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ R L +VEI + + T + LMG+ R +FI A+ + + Sbjct: 590 TTLNPETRILKQVEIEDARMATEVT----SMLMGSDVAPRREFIYTHANEAE-IDA 640 >gi|15674930|ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes M1 GAS] gi|13622073|gb|AAK33825.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes M1 GAS] Length = 650 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|322376370|ref|ZP_08050863.1| DNA gyrase, B subunit [Streptococcus sp. M334] gi|321282177|gb|EFX59184.1| DNA gyrase, B subunit [Streptococcus sp. M334] Length = 648 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+AN I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFANHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFETPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|224500820|ref|ZP_03669169.1| DNA topoisomerase IV subunit B [Listeria monocytogenes Finland 1988] Length = 647 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 239/647 (36%), Positives = 356/647 (55%), Gaps = 35/647 (5%) Query: 47 SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106 SI++LEGLE VR RP MYIG TD + LHHL E++DN++DE +AG+ I V+L +G Sbjct: 1 DSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDETLAGFGKKIVVTLHEDGS 60 Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVVNAL 165 ++V D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG SVVNAL Sbjct: 61 VSVSDEGRGMPVGMHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVVNAL 118 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAA 225 S+ L VT+ R + QKF G KK GT I F+PDP IF F+ Sbjct: 119 SEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSKATGTTIRFKPDPAIFPTT-SFNYE 177 Query: 226 RLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285 L + + A+L + ++ + E F+F G+K +++ E + ++ Sbjct: 178 TLSERLRESAFLLKGMLIELIDER-------VGMAEAFHFEEGVKNFVEYINEGKDVLHP 230 Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 + + E VE A + + I S+ N + T G+HESG++ A+TR Sbjct: 231 VA-SFEGENATI---EVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 286 Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400 YA ++ ++ D+ +LS+ + E +F GQTK KL + +A++ V+ + Sbjct: 287 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 346 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCS 457 + ++L +NP ++ L++ ++ E R RK RE R +K L GKL Sbjct: 347 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ Sbjct: 407 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 +G +++ ED Y+KV+IMTDAD DGAHI LLLTFFY+ M L+E +F+ P Sbjct: 467 HTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALP 526 Query: 578 PLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PL+++++G K V YA +E +++ K I R+KGLGEM A QL ET M Sbjct: 527 PLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGK----GYMIQRYKGLGEMNADQLWETTM 582 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 + + RTL+RV ++ + + LMG K + R ++I++ F Sbjct: 583 NPDTRTLIRVRVDD----SARAERRVATLMGDKVEPRRQWIEKHVEF 625 >gi|300781943|ref|YP_003762234.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] gi|299791457|gb|ADJ41832.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] Length = 655 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 254/659 (38%), Positives = 375/659 (56%), Gaps = 27/659 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A +EV+L Sbjct: 7 EYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGHATKVEVTLL 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + VVD+GRGIPV+ HPK K TLE++LT LHAGGKFD+ +Y +SGGLHGVG+SVV Sbjct: 67 ADGGVRVVDDGRGIPVDMHPK-EQKPTLEVVLTVLHAGGKFDSDSYAVSGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L V + Q+++ IP PLE GT ITF D IF + Sbjct: 126 NALSKKLLAEVKYGGRSWRQEYTDQIP-GPLEDLGPASE-TGTTITFWADGDIFET-TTY 182 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDK--------EIAEKYGIPEKEEFYFPGGLKTYLQ 274 + + + Q A+L+ + ++ + K +++ + +PGGL+ +++ Sbjct: 183 NFETISRRLQEMAFLNKGLTLSLRDERVADEEAEADAEGKVARVKEKTYCYPGGLEDFVK 242 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++ I S + + + + G VE A+ W P + ++ NTI T EGGTHE G Sbjct: 243 HINGSKDPIHSSVISFEAKGTG---LEVEVAMQWNNGFTPSVYTFANTINTHEGGTHEEG 299 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + YA + ++ ++ DD+ I+S+ + EP+F GQTKTKL + + Sbjct: 300 FRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAAIVSIKLSEPQFEGQTKTKLGNSE 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 A+ V+ + + +NP EA ++ I ++ R+ RK R+ V RK A+ LP Sbjct: 360 AKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAARKARDLVRRKGALDIGGLP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DC EL+IVEGDSAGGSAK+ R+ QA+LP+RGKI+NV A +++ N Sbjct: 420 GKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDRVLKN 479 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG ++ E LRY K+++M DADVDG HI +LLLT ++ M LIE Sbjct: 480 TEVQSLITALGTGIHDEFDLEKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTPLIEHG 539 Query: 571 HLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLAS 626 H+FL PPL++I + YA+ + + +++ + GK + I R+KGLGEM A Sbjct: 540 HVFLSRPPLYKIKWPRAEPEYAYSDRERDAVIQAGVEAGKRLPKDDAIQRYKGLGEMNAE 599 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L ET MD R L +V ++ + + LMG + R FI A + + Sbjct: 600 ELWETTMDPANRLLGQVTLDD----AAQADELFSVLMGEDVEARRSFITRNAKDVRFLD 654 >gi|306825577|ref|ZP_07458916.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431938|gb|EFM34915.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 648 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 374/653 (57%), Gaps = 24/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVLIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I+ Q++ RG ++ LE ++ GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIYYQEYHRGNVVADLEVIGDT-DRTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 ++ PP++ + G++ Y E Q+ L G+ K I R+KGLGEM Q Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGANQEIKLQEALAR-HSEGRSKPTIQRYKGLGEMDDHQ 594 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 595 LWETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|239980782|ref|ZP_04703306.1| DNA gyrase subunit B [Streptomyces albus J1074] gi|291452640|ref|ZP_06592030.1| DNA topoisomerase subunit B [Streptomyces albus J1074] gi|291355589|gb|EFE82491.1| DNA topoisomerase subunit B [Streptomyces albus J1074] Length = 701 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 255/707 (36%), Positives = 381/707 (53%), Gaps = 29/707 (4%) Query: 1 MTDDSI--DLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M D + + P + +S + + + +P A A +YDAS+I +LEGL+ V Sbjct: 1 MADSGNPNENIPSTGPGEEDASGTPQTAESVIAAPEGAAIEAPVSYDASAITVLEGLDAV 60 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIG T E+ LHH+ EV+DN++DE +AG+A+ I+V++ +G + V+DNGRGIPV Sbjct: 61 RKRPGMYIGSTGERGLHHMVQEVVDNSVDEALAGHADFIDVTILADGGVRVIDNGRGIPV 120 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 P K +E++LT LHAGGKF Y +SGGLHGVG+SVVNALS + V + Sbjct: 121 GIVP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEIRTDGH 179 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 +SQ + RG+P +PL + + + GT +TF D IF + L + Q A+L+ Sbjct: 180 HWSQSYERGVPTAPLAQ-GEATEETGTSVTFWADSSIFET-TDYSFETLSRRFQEMAFLN 237 Query: 239 GRVKTCWSCDKEIAE-------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285 + + ++ A+ + P +++ GG+ ++ + + Sbjct: 238 KGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHYEGGIVDFVTYLNSRKGEVIH 297 Query: 286 EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKK 344 + +VE A+ W E + S+ NTI T EGGTHE G R ALT + K Sbjct: 298 PTVIDIEAEDKDRLLSVEVAMQWNGGYSEGVYSFANTIHTHEGGTHEEGFRGALTTLVNK 357 Query: 345 YAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 YA + + ++ DD+ I+SV + EP+F GQTKTKL + +A+ V+ + + Sbjct: 358 YARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVYE 417 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461 + +NP EA ++ I + R+ RK R++ R+ + LPGKL+DC N Sbjct: 418 HLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLETASLPGKLSDCQSNDP 477 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 E+FIVEGDSAGGSAK R+ QA+LP+RGKILNV A +KI +NQ+I L+ A G Sbjct: 478 TKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARIDKILHNQEIQALISAFG 537 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + E LRY K+I+M DADVDG HI +LLLTF ++ M L+E H+FL PPL++ Sbjct: 538 TGVHEDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYK 597 Query: 582 ITQGTKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKR 638 I YA+ + + ++ ++ GK + RFKGLGEM A +L+ T MD R Sbjct: 598 IKWTRDDFQYAYSDRERDALIALGREQGKRIRDDSVQRFKGLGEMNAEELRITTMDQEHR 657 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L +V ++ D + LMG + R +FIQ A + + Sbjct: 658 VLGQVTLDD----AAQADDLFSVLMGEDVEARRQFIQRNAKDVRFLD 700 >gi|1107468|gb|AAA83016.1| gyrase B [Mycobacterium tuberculosis H37Rv] Length = 686 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y A+SI ILEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY Sbjct: 13 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 72 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V L +G + V D+GRGIPV H T+++++T LHAGGKFD+ Y ISGG Sbjct: 73 ATTVNVVLLEDGGVEVADDGRGIPVATH--ASGIPTVDVVMTQLHAGGKFDSDAYAISGG 130 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L V + R +SQ + + PL K+ K G+ + F DP Sbjct: 131 LHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGL--KQGAPTKKTGSTVRFWADP 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY------------------ 255 +F +D + + Q A+L+ + + ++ ++ Sbjct: 189 AVFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 247 Query: 256 -------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++PGGL +++ ++ I S I + G VE AI W Sbjct: 248 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGH---EVEIAIEW 304 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KYA+ + + ++ DD+ Sbjct: 305 NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREG 364 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 365 LAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSS 424 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 425 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDS 484 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 485 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADA 544 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +LE Sbjct: 545 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 604 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 605 GLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 659 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLD 685 >gi|323127404|gb|ADX24701.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 649 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 127 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + +L++N A+ L+ I+ R RK R+ +R K G Sbjct: 357 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 537 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|251782581|ref|YP_002996884.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391211|dbj|BAH81670.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 650 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 241/653 (36%), Positives = 369/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G S + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGSDFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|71910524|ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005] gi|71853306|gb|AAZ51329.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005] Length = 649 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|315646515|ref|ZP_07899633.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453] gi|315278158|gb|EFU41478.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453] Length = 659 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 249/671 (37%), Positives = 353/671 (52%), Gaps = 42/671 (6%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + ++ YDA I++LEGL VR RPGMYIG T LHHL E++DNA+DE + Sbjct: 9 AESSKNGGNSRSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 68 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 A Y + IE++L +G TV DNGRGIP H T +++ T LHAGGKF S Y+ Sbjct: 69 AKYCSRIEITLHKDGSATVYDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 126 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200 SGGLHGVG SV NALS+ L V + R+ + Q+F G P++ LE Sbjct: 127 SGGLHGVGASVTNALSEWLEVEIYREGKVHRQRFEYWQDAKGKEHVGEPVTGLEVHGNTN 186 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT+ITF+PD ++F + L + Q A+L+ ++ ++ Sbjct: 187 K-TGTKITFKPDARVFTTGTHLNYDTLAERLQEIAFLNSGLRIVLKDERS-------GNG 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319 EEF++ GG ++Q E + ++ I EK VE A+ + E S+ Sbjct: 239 EEFFYEGGASQFVQFLNEGKDVLHDVIHFY-AEKDDI---EVEIALQYNAGYTETLASFV 294 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N+I T GGTHE+G + A TR + YA ++ ++ +DL + ++SV + E Sbjct: 295 NSIPTRGGGTHETGFKTAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEV 354 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 EF GQTK +L S A+ TV++ + + +L +NP A LL+ I+ S+ R RK R+ Sbjct: 355 EFVGQTKDQLGSASARSTVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARD 414 Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 R L GKL TELFIVEGDSAGGSAKQ R+ QA+LPL+GK Sbjct: 415 EMRSGKKRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 +N + I N + +V A+G +++ D Y K+IIMTDAD DGAHI LL Sbjct: 475 PMNPEKSKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHIQVLL 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI--TQGT--KSVYAHDEEHKQKILEEFKKHGKGK 611 LTFFY+ M LI++ ++L PPL++I G YA E L+EFK Sbjct: 535 LTFFYRYMKPLIDEGRVYLAQPPLYKIASKSGKLETIRYAWTEGQLANYLKEFKN----- 589 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 E+ R+KGLGEM QL ET M+ RTLL+V+I+ + ++ LMG K D R Sbjct: 590 YELQRYKGLGEMNPEQLWETTMNPESRTLLQVQIDD----AAKAERRVSTLMGDKVDPRK 645 Query: 672 KFIQERASFID 682 ++I E +F + Sbjct: 646 RWIVENVNFAE 656 >gi|183980040|ref|YP_001848331.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M] gi|183173366|gb|ACC38476.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M] Length = 692 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 257/703 (36%), Positives = 373/703 (53%), Gaps = 49/703 (6%) Query: 19 SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78 + + E + A + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 2 TGPRASNPEENIRTVAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLV 61 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 EV+DN++DE +AGYA + V L +G + V DNGRGIPV H T+++++T LH Sbjct: 62 WEVVDNSVDEAMAGYATQVNVRLLDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLH 119 Query: 139 AGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196 AGGKF +NS Y +SGGLHGVG+SVVNALS L V + R +SQ + R P + K+ Sbjct: 120 AGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQ 177 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY- 255 + K GT I F DP IF +D + + Q A+L+ + + ++ ++ Sbjct: 178 GEATKKTGTTIRFWADPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVV 236 Query: 256 ------------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291 + F++PGGL +++ +S I I + Sbjct: 237 DDVVSDTAEAPKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFE 296 Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AEL 348 + G VE A+ W + ++ NTI T EGGTHE G R ALT + KY + Sbjct: 297 GKGSGH---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKK 353 Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 + ++ DD+ ++SV + EP+F GQTKTKL + + + V+ + H+ Sbjct: 354 LLKDKDPNLTGDDIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWF 413 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467 NP EA ++ + ++ RL RK RE V RK+A LPGKLADC +EL+ Sbjct: 414 EANPSEAKTIVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELY 473 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 +VEGDSAGGSAK R+ QA+LPLRGKI+NV A +++ N ++ ++ ALG + Sbjct: 474 VVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE 533 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586 + LRY K+++M DADVDG HI++LLLT ++ M LIE H+FL PPL+++ Sbjct: 534 FDLSKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRT 593 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642 + +A+ + + +LE K GK KI I R+KGLGEM A +L ET MD + R L + Sbjct: 594 EPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQ 652 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ + + LMG D R FI A + + Sbjct: 653 VTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 691 >gi|329117688|ref|ZP_08246405.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD 2020] gi|326908093|gb|EGE55007.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD 2020] Length = 651 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 368/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V++ Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGTGLHHLIWEIVDNAVDEALSGFGNAIKVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVEDSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P+S L+K ++K GT +TF PD IF Sbjct: 127 VNALSAWLQVDITRDGVVYRQRFENGGKPVSTLKKIGTAPKSKTGTTVTFMPDETIFSS- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 186 IDFKFNTIAERLKESAFLLKDVKMTLTDLR-----GDEPVVEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ + + V+ A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPV-IYIEGQD---QEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKAAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V+ + D ++L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 VVDGIVSDKLTYFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G + + ED+ Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H Sbjct: 477 EINTMIHTIGAGVGADFSIEDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PP +++++G K YA + + +EF K + R+KGLGEM A Q Sbjct: 537 VYIALPPFYKMSKGKGKSEKIAYAWTDGELDDLRKEFGKGAM----LQRYKGLGEMNADQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|307709096|ref|ZP_07645555.1| DNA gyrase, B subunit [Streptococcus mitis SK564] gi|307620042|gb|EFN99159.1| DNA gyrase, B subunit [Streptococcus mitis SK564] Length = 648 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 253/648 (39%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NYDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQNYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|227432902|ref|ZP_03914846.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351335|gb|EEJ41617.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 672 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 256/659 (38%), Positives = 380/659 (57%), Gaps = 22/659 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + + +Y+A I++LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ Sbjct: 28 ASTVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQGLHHLVWEIVDNGIDEALAGF 87 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ I V+++ + +TV D+GRGIPV+ K K LE + T LHAGGKF Y++SGG Sbjct: 88 ASHITVTIEKDNSITVTDDGRGIPVDIQTK-TGKPALETVFTVLHAGGKFGGGGYKVSGG 146 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS +L V V R N ++ F G + + E+ +RGT + F+PD Sbjct: 147 LHGVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPD 206 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 IF + ++ LL + A+L+ ++ + + P KE F F GG+K Y Sbjct: 207 TDIFRETTTYNYKTLLTRVRELAFLNKGLRISIADKR-----LEEPIKESFNFEGGIKEY 261 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHE 331 +Q E++ +I E + E+ G VE A+ + + + ++ N I T EGGTHE Sbjct: 262 VQYLNEDKQVIFPEPVYVEGEENGI---VVEAALQYTTDIKDSLRTFANNINTYEGGTHE 318 Query: 332 SGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G + ALTR I YA + + S+ +D+ I+S+ +P+F GQTKTKL + Sbjct: 319 TGFKTALTRVINDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGN 378 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLR 448 DA++ + + F ++++NP A +++E + + RL ++ RE+ +++ + Sbjct: 379 SDARQATDRMFSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGN 438 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLAD + N +ELFIVEGDSAGGSAKQ RNR QA+LP+RGKILNV A E++ Sbjct: 439 LPGKLADNTSNDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVL 498 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I L A+G + E Y KVIIMTDADVDGAHI +LLLT FY+ M L++ Sbjct: 499 ANEEIRSLFTAMGTGFGDDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVD 558 Query: 569 QKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 ++++ PPL+ + Y +E + L + + K K + R+KGLGEM Sbjct: 559 AGYIYIAQPPLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPK--VQRYKGLGEMDYD 616 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T MDA R LLRV D ++ + I+ LMG R KFI++ A F++++ Sbjct: 617 QLADTTMDAQNRRLLRV----DPADAEEAEAVIDMLMGGDVPPRRKFIEDNAVFVENLD 671 >gi|261406137|ref|YP_003242378.1| DNA topoisomerase IV subunit B [Paenibacillus sp. Y412MC10] gi|329924920|ref|ZP_08279867.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5] gi|261282600|gb|ACX64571.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. Y412MC10] gi|328940304|gb|EGG36633.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5] Length = 659 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 249/671 (37%), Positives = 351/671 (52%), Gaps = 42/671 (6%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + YDA I++LEGL VR RPGMYIG T LHHL E++DNA+DE + Sbjct: 9 AESSKNGGTNRSGYDADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 68 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 A Y + IE++L +G TV DNGRGIP H T +++ T LHAGGKF S Y+ Sbjct: 69 AKYCSRIEITLHKDGSATVYDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 126 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200 SGGLHGVG SV NALS+ L V + R+ I Q+F G P++ LE Sbjct: 127 SGGLHGVGASVTNALSEWLEVEIYREGKIHRQRFEYWQDKKGKEHVGEPVTGLEVLGNTN 186 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT+ITF+PD ++F + L + Q A+L+ ++ ++ Sbjct: 187 K-TGTKITFKPDARVFTSGTHLNYDTLAERLQEIAFLNSGLRIVLKDERS-------GNG 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYC 319 EEF++ GG ++Q E + ++ I EK VE A+ + E S+ Sbjct: 239 EEFFYEGGASQFVQFLNEGKDVLHDVIHFY-AEKDDI---EVEIALQYNAGYTETLASFV 294 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N+I T GGTHE+G + A TR + YA ++ ++ +DL + ++SV + E Sbjct: 295 NSIPTRGGGTHETGFKTAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEV 354 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 EF GQTK +L S A+ V++ + + +L +NP A LL+ I+ S+ R RK R+ Sbjct: 355 EFVGQTKDQLGSASARSAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARD 414 Query: 438 VNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 R L GKL TELFIVEGDSAGGSAKQ R+ QA+LPL+GK Sbjct: 415 EMRSGKKRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 +N + I N + +V A+G +++ D Y K+IIMTDAD DGAHI LL Sbjct: 475 PMNPEKSKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHIQVLL 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRI--TQGT--KSVYAHDEEHKQKILEEFKKHGKGK 611 LTFFY+ M LI++ ++L PPL++I G YA +E L+EFK Sbjct: 535 LTFFYRYMKPLIDEGRVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKEFKN----- 589 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 E+ R+KGLGEM QL ET M+ RTLL+V+I + ++ LMG K D R Sbjct: 590 FELQRYKGLGEMNPEQLWETTMNPETRTLLQVQIED----AAKAERRVSTLMGDKVDPRK 645 Query: 672 KFIQERASFID 682 ++I E +F + Sbjct: 646 RWIVENVNFAE 656 >gi|148377999|ref|YP_001256875.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2] gi|148292045|emb|CAL59437.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2] Length = 655 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 257/665 (38%), Positives = 362/665 (54%), Gaps = 25/665 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ NQS +++Y+ASSIR+LEGLE VR+RPGMYIG +K LHHL E++DN++DE + Sbjct: 5 ENTNQDNQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYAN I++++ +G++ + DNGRGIPV HP+ ST+E +LT LHAGGKFD+ Y++ Sbjct: 65 AGYANFIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRIT 208 SGGLHGVG SVVNALS HV V R+ + F G + GT+I Sbjct: 124 SGGLHGVGASVVNALSSNFHVWVKREGHTYYAHFQHGGQTVQPLTVINNIDPSETGTKIK 183 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD I F + + AYL+ + + EEFY+ GG Sbjct: 184 FHPDFTILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDEINNT-------SEEFYYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 L Y+ E + L+ I + K + TVE A+ + T+Y N I+T Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE G AL+R I YA + + +D V I+SV +P F GQ Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNGLIKNENERLNKEDTSKGLVAIVSVKHPDPIFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KL + DA+ V L + Y +NPI+A +++ ++ + RL E + Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAEAVQAN 415 Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 PGKLA+C+ A EL+IVEG+SAGGSAK R+R+ QA+LPLRGK++N Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 E++ +N +I+ L+ ALG + LRY KVIIMTDADVDGAHI +LLLTFFY Sbjct: 476 KVSPERVLSNAEIISLITALGTGLNESFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + LIE +++ PPL++I Q YA+++ K IL+ + KI I R+KGL Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSL--NQDSKITIQRYKGL 593 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET M+ R + +V+I+ LMG R +FI++ A F Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649 Query: 681 IDDVG 685 + ++ Sbjct: 650 VQNID 654 >gi|313890229|ref|ZP_07823864.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313121590|gb|EFR44694.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 649 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 244/652 (37%), Positives = 372/652 (57%), Gaps = 34/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V+++ Sbjct: 10 NYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIKVTIN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 ADGSVSVADSGRGMPTGKH--AMGIPTVQVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKK-EKVRNKRGTRITFRPDPKIFGDKA 220 NALS L V + R +++ Q+F G P+S L+K ++K GT++TF PD IF Sbjct: 128 NALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTKVTFMPDDSIFST-T 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L VK + + EEF++ G++ ++ E++ Sbjct: 187 DFKFNTIAERLKESAFLLKDVKMSLTDLR-----GEEAVTEEFHYENGVQDFVSYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ I+ E+ V+ A+ + + + S+ N + T +GG+HE+GL+ A+T Sbjct: 242 ETLTPVIYVEGEEQD----FQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297 Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + + YA T + ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 KVMNDYARKTSLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPGK 452 VE + + ++L++N AT L+ I+ + R RK R+ +R K K L GK Sbjct: 358 VEGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +V +G + +R E++ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E+ H+ Sbjct: 478 INTMVYTIGAGVGADFRIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHV 537 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G K YA + + + EF K + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMSKGKGKTAKVSYAWTDGELEDLRREFGKGAM----LQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL+RV I+ L + ++ LMG KA R ++I++ +F Sbjct: 594 WETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641 >gi|197294338|ref|YP_001798879.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense] gi|171853665|emb|CAM11548.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense] Length = 662 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 264/672 (39%), Positives = 377/672 (56%), Gaps = 40/672 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI+ILEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+AN I + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAAKGLHHLVWEIVDNSIDEALAGHANEITLEI 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 ++V DNGRGIPV H K K +E ILTTLHAGGKFD+S+Y+ISGGLHGVG SV Sbjct: 62 LPGDIISVTDNGRGIPVGIHHK-TGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS V + I QK+ +G+P++PLE K +++GT I F DP IF + Sbjct: 121 VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKT-DRKGTVIKFLADPSIFQETTI 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +DA L + Q ++L+ +K + P FY GL+ YL + Sbjct: 180 YDAKILKERIQQLSFLNKGLKLNLIDQR-----QEKPVSFNFYHEKGLQDYLTFINQTYM 234 Query: 282 LIS-----------------SEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324 + + + + E AI + +I S+ N I T Sbjct: 235 QKPFHNLFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHT 294 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTHE G ++AL+R KYA+ K+ S++S+D++ I+S+ ++P+F GQT Sbjct: 295 HEGGTHEEGFKLALSRNFSKYAKDYNLLKKNESLLSEDILEGITAIISLKHQDPQFEGQT 354 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KL +++ ++ V + +L++NP +A K++E + + RL ++ RE+ R Sbjct: 355 KAKLGNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNKP 414 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L KLADC +EL+IVEGDSAGGSAKQ R+ QA+LPL+GK+LNV Sbjct: 415 LDTLGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQ 474 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAHIASLLLTFF 559 S KI N++I L+QA+G ++ LRY K+IIMTDADVDGAHI +LLLTFF Sbjct: 475 SSKILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 ++ + LIE+ +++ PPL++ +G Y + E K+KI KK+ K R+KG Sbjct: 535 FRNLRILIEKGYIYFARPPLYKYQKGKNITYFY--EEKEKIDFSLKKNIKDGF--QRYKG 590 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMGTKADERFKF 673 LGEM QL ET M+ KRTLL+ + D ++K+ + N LMG + R +F Sbjct: 591 LGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEVFPRKEF 650 Query: 674 IQERASFIDDVG 685 I A D + Sbjct: 651 ILNNALEAD-LD 661 >gi|251782113|ref|YP_002996415.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390742|dbj|BAH81201.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 650 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 256/652 (39%), Positives = 374/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PD +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDSEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRREFIEENAVY 645 >gi|85374021|ref|YP_458083.1| DNA topoisomerase IV subunit B [Erythrobacter litoralis HTCC2594] gi|84787104|gb|ABC63286.1| topoisomeraseB subunit [Erythrobacter litoralis HTCC2594] Length = 658 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 345/650 (53%), Positives = 456/650 (70%), Gaps = 8/650 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 ++S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DNAMDE +AG+A+ Sbjct: 8 NTPASSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAS 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I ++L+ ++V DNGRGIPV+ HPKFP KSTLE+IL+TLH+GGKF Y SGGLH Sbjct: 68 RIAITLEEGNTVSVADNGRGIPVDEHPKFPGKSTLEVILSTLHSGGKFSGKAYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS V VAR +++Q+FS+G L +EK N+RGT +TF PD +I Sbjct: 128 GVGVSVVNALSSYTRVEVARDRELYAQEFSKGQALGKIEKLGPTPNRRGTTVTFTPDTEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FGD F ARL K+ +SKAYL V+ W C +A +PE+ F FPGGL +L+ Sbjct: 188 FGD-RQFKPARLFKLARSKAYLFAGVEIRWKCAPSLASDD-VPEEAVFKFPGGLADHLKE 245 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGL 334 ++ R ++++ FTG + H G VEWAIAW + + YCNT+ T +GGTHE GL Sbjct: 246 QVGERECVTADPFTGSQDFPDNH-GRVEWAIAWPLYSDGSTSWYCNTVPTPDGGTHEQGL 304 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 R ALT+G++ + ELT K+A I +DD+M A +LSVFIR+P+F QTK +L S +A R Sbjct: 305 RAALTKGLRVFGELTGTKKAKDISADDVMTGAEIMLSVFIRDPQFQSQTKDRLTSPEASR 364 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGK 452 VENA+RD FDH+L N LL V+ER EERLRR+++RE+ RKTA +KLRLPGK Sbjct: 365 LVENAVRDHFDHFLSDNMERGKALLGSVMERMEERLRRKQEREIKRKTATNAKKLRLPGK 424 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DCS TELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA ++KIR NQ+ Sbjct: 425 LTDCSGETDAETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIRANQE 484 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I DL A+GC TR E+LRY+++IIMTDADVDGAHIA+LL+TFF+QEM +++ HL Sbjct: 485 IADLSLAMGCGTRKDCDPENLRYDRIIIMTDADVDGAHIATLLMTFFFQEMSEVVRNGHL 544 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL+R+T G +S YA DE H+Q++ K K++++RFKGLGEM QL+ET Sbjct: 545 YLAQPPLYRLTAGKESRYAQDEAHRQELEGTVFK--GKKVDVARFKGLGEMNPQQLRETT 602 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M+ R+L+R+ + + ++ +++LMG + RF FIQ RA ID Sbjct: 603 MNPETRSLIRITLPAEHEQRFAVKELVDRLMGRNPEHRFNFIQNRAGEID 652 >gi|307708511|ref|ZP_07644976.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261] gi|307615427|gb|EFN94635.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261] Length = 648 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFIPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|306829208|ref|ZP_07462398.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis ATCC 6249] gi|304428294|gb|EFM31384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis ATCC 6249] Length = 648 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 251/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IQVFIEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ G ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVHVHKNGKIHYQEYRCGHVVADLEVVGDT-DKTGTTVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFEKLNKRVQELAFLNRGLRISITDKREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I + E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDKPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|255972743|ref|ZP_05423329.1| gram positive topoisomerase IV [Enterococcus faecalis T1] gi|256762550|ref|ZP_05503130.1| gram positive topoisomerase IV [Enterococcus faecalis T3] gi|255963761|gb|EET96237.1| gram positive topoisomerase IV [Enterococcus faecalis T1] gi|256683801|gb|EEU23496.1| gram positive topoisomerase IV [Enterococcus faecalis T3] Length = 666 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 235/639 (36%), Positives = 348/639 (54%), Gaps = 33/639 (5%) Query: 55 LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114 +E VR RPGMYIG TD + LHHL E++DNA+DE ++GY N I V++ + + V D+GR Sbjct: 1 MEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGR 60 Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174 G+P H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + Sbjct: 61 GMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118 Query: 175 RQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233 R + ++F G P+ L+K K + + GT +TF PD IF F L + + Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRE 177 Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 A+L VK + ++ P++E F++ G+K ++ E + ++ + Sbjct: 178 SAFLLKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGA 231 Query: 294 KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350 K+G VE A + + E S+ N + T +GGTHE G++ ++T+ +YA Sbjct: 232 KEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLL 288 Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 ++ ++ D +LS+ + E +F GQTK KL + A+ V+N + + YL Sbjct: 289 KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 348 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTE 465 +N + L+ I+ E R RK RE +R RK L GKL E Sbjct: 349 QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 408 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 L++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G Sbjct: 409 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 468 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++++G Sbjct: 469 PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKG 528 Query: 586 --TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 KSV YA + +++++ K + R+KGLGEM A QL ET MD RTL+ Sbjct: 529 TGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLI 584 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 RV I+ + + LMG K + R K+I++ F Sbjct: 585 RVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 619 >gi|313122780|ref|YP_004033039.1| DNA gyrase subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279343|gb|ADQ60062.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 653 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +A Sbjct: 9 KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A IEV+++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 69 GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG SVVNALS +L+VTV R + F G + L++ V + GT + F Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF + FD L + A+L+ +K ++ ++ E + ++F GG+K Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + ++ E + + +G VE ++ + + ++ N I T EGG Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299 Query: 330 HESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G + ALTR + YA T+ + ++ +D+ ++SV P+F GQTKTKL Sbjct: 300 HEAGFKTALTRVVNDYAHKTKILKESDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + DA+ V+ A + F +L++NP A K++E + +R + +K+ + Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLAD + N + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M + Sbjct: 480 ILANQEIRTLFTALGTGFGADFDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I++ ++++ PPL+++ QG Y +E L + K + R+KGLGEM A Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L RV D KD + LMG + R KFI++ A +++++ Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653 >gi|116513233|ref|YP_812139.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092548|gb|ABJ57701.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325124860|gb|ADY84190.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 653 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 372/660 (56%), Gaps = 20/660 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +A Sbjct: 9 KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A IEV+++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 69 GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG SVVNALS +L+VTV R + F G + L++ V + GT + F Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF + FD L + A+L+ +K ++ ++ E + ++F GG+K Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + ++ E + + +G VE ++ + + ++ N I T EGG Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G + ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 300 HEAGFKTALTRVINDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKL 359 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + DA+ V+ A + F +L++NP A K++E + +R + +K+ + Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLAD + N + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M + Sbjct: 480 ILANQEIRTLFTALGAGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I++ ++++ PPL+++ QG Y +E L + K + R+KGLGEM A Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L RV D KD + LMG + R KFI++ A +++++ Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653 >gi|39938984|ref|NP_950750.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M] gi|39722093|dbj|BAD04583.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M] Length = 671 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 267/681 (39%), Positives = 376/681 (55%), Gaps = 49/681 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI+ILEGLE VR RPGMYIG T +K LHHL E++DN++DE +AG+AN I + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANKITLEI 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 ++V DNGRGIPV+ HPK K +E ILTTLHAGGKFDNS+Y++SGGLHGVG SV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPK-TGKPAVETILTTLHAGGKFDNSSYKVSGGLHGVGASV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS V + I+ QK+ +GI +SPLE K RGT I F DP+IF + Sbjct: 121 VNALSTWFTVEIHLNKQIYFQKYEKGIAVSPLEVIGKTNK-RGTTIQFLADPEIFQETTI 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN-R 280 ++ L + Q ++L+ +K + + E F GL+ YL + + Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLNIADKRYEKETVFN-----FCHEKGLQDYLDFINTSHK 234 Query: 281 SLISSEIFTGKTE------------------------KKGTHRGTVEWAIAWCEENPEIT 316 EIF + E + AI +N +I Sbjct: 235 QTPFHEIFYLEKEFQKLAFEIVFEYTTKIRPPKKDAQGNEIEEKEGKDAIPNYTQNQKIF 294 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIR 375 S+ N I T EGGTHE G ++AL R I KYA+ K+ ++S+D++ I+S+ + Sbjct: 295 SFVNNIPTHEGGTHEEGFKLALNRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQ 354 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 P+F GQTK KL + + ++ + + YL++NP ++ K+++ + + RL ++ Sbjct: 355 YPQFEGQTKAKLANTEVRQITSQLFGEFLEKYLLENPQDSRKIIDKCLLSANARLAAKRA 414 Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 REV R + L KLADC H +EL+IVEGDSAGGSAKQ R+ QA+LPLRGK Sbjct: 415 REVVRNKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHI 551 +LNV + KI N++I L+QA+G + + +RY K+IIMTDADVDGAHI Sbjct: 475 VLNVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNMDKIRYHKIIIMTDADVDGAHI 534 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKG 610 +LLLTFF++ LIE+ +++ PPL++ +G + Y +DE K + F Sbjct: 535 RTLLLTFFFRHFRKLIEKGYIYFARPPLYKYQKGKGAPKYFYDE----KAKQTFATKNNL 590 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMG 664 K R+KGLGEM +QL ET MD RTLL+ + D +L + + N LMG Sbjct: 591 KDGFQRYKGLGEMNPNQLWETTMDPETRTLLKASLKDALNALSDEEALMEADQTFNMLMG 650 Query: 665 TKADERFKFIQERASFIDDVG 685 K R FI E+A D + Sbjct: 651 EKVLPRKNFILEKALEAD-LD 670 >gi|269954816|ref|YP_003324605.1| DNA gyrase subunit B [Xylanimonas cellulosilytica DSM 15894] gi|269303497|gb|ACZ29047.1| DNA gyrase, B subunit [Xylanimonas cellulosilytica DSM 15894] Length = 681 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 247/678 (36%), Positives = 359/678 (52%), Gaps = 42/678 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA +I +LEGLE VR RPGMYIG T E+ LHHL +EV+DN++DE +AGYA+ I+V+L Sbjct: 9 YDAGNITVLEGLEAVRKRPGMYIGSTGERGLHHLVTEVVDNSVDEALAGYADTIDVTLLA 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + VVDNGRGIPV HP K T+E+++T LHAGGKF Y +SGGLHGVGISVVN Sbjct: 69 DGGVRVVDNGRGIPVAIHP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVN 127 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + +AR + +F+ G ++ + + GT TF DP+IF FD Sbjct: 128 ALSRRVVSEIARDGYHWRMEFADGGHPVGELQRLEPTEETGTTQTFWADPEIFET-TEFD 186 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK---------------------------YG 256 L Q A+L+ + + ++ Sbjct: 187 FETLRARFQQMAFLNKGLTITLTDERAGHADLEDEVVGEVPVPDADGVVVVDHDDDPSTP 246 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314 + + GGL Y++ ++ + E + + ++E A+ W Sbjct: 247 PARTVTYRYDGGLTDYVKHLNSSKRVDLIHPEVIDFESEDTERKISLEIAMQWTSAYSES 306 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + +Y NTI T EGGTHE G R A+T + YA ++ ++ DD+ ++S+ Sbjct: 307 VHTYANTISTTEGGTHEEGFRAAMTNLVNSYAREKGILKEKEDNLTGDDIREGLTAVISI 366 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F GQTKTKL + +A+ V+ +R+ + +P EA ++ I S+ R+ Sbjct: 367 KLGEPQFEGQTKTKLGNTEAKTFVQRVVREQLTDWFDSHPNEAKDVIRKAISASQARIAA 426 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE R+ + +PGKL DC N E++IVEGDSAGGSA + RN NQA+LP Sbjct: 427 RKAREATRRKGLLSSGGMPGKLKDCQSNRPEECEIYIVEGDSAGGSAVRGRNPHNQAILP 486 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 +RGKILNV A +K +N ++ L+ A G + LRY KVI+M DADVDG HI Sbjct: 487 IRGKILNVERARLDKALSNLEVQSLITAFGTGIGEDFDASKLRYHKVILMADADVDGQHI 546 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG 610 A+LLLT ++ M LIEQ H++L PPL+R+ Y + ++ + + E +GK Sbjct: 547 ATLLLTLLFRYMRPLIEQGHVYLAMPPLYRLKWSNAPHDYVYSDKERDAFIREGLANGKR 606 Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 + I R+KGLGEM +L ET MD + RTL +V ++ + + LMG Sbjct: 607 MPKDKGIQRYKGLGEMDYQELWETTMDPDHRTLRQVTMDD----AAAADEIFSMLMGEDV 662 Query: 668 DERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 663 ESRRSFIQRNAKDVRFLD 680 >gi|89114226|gb|ABD61708.1| DNA gyrase subunit B [Acholeplasma oculi] gi|89114230|gb|ABD61710.1| DNA gyrase subunit B [Acholeplasma oculi] Length = 594 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 242/612 (39%), Positives = 359/612 (58%), Gaps = 20/612 (3%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE +AGYA+ I + + + V Sbjct: 1 ILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQVT 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS Sbjct: 61 DNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V + + I+ QK+ RGIP L + GTR TF DP IF + ++ L Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGSTEE-TGTRTTFLADPLIFTETTVYNLETLKNR 178 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 Q A+L+ +K + P +E F++ GG+ Y+Q ++++ I ++ Sbjct: 179 IQQLAFLNKGLKLTLIDSR-----LETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYT 233 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + E+ G TVE A+ + + + N I T EGG HE G ++ALTR I KYA+ Sbjct: 234 EKEQDGV---TVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDL 290 Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + K+ I+ +D I+SV EP+F GQTKTKL + + + L + + +L+ Sbjct: 291 KMKKDDVILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLL 350 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468 +NP +A +++ V+ + R+ RK +E RK+ + L KLADC +E++I Sbjct: 351 ENPQQAKLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYI 410 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G ++ Sbjct: 411 VEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEF 470 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 LRY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL+++T G Sbjct: 471 DITKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNL 530 Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 Y + E+ + L+ + K I R+KGLGEM A QL +T MD RTLL++++ Sbjct: 531 KYVYSEDELNETLKSIE----TKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIKLEDA 586 Query: 649 LNSLKDTQDSIN 660 + + + Sbjct: 587 I----EADQVFS 594 >gi|68535067|ref|YP_249772.1| DNA gyrase subunit B [Corynebacterium jeikeium K411] gi|68262666|emb|CAI36154.1| DNA gyrase subunit B [Corynebacterium jeikeium K411] Length = 674 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 257/686 (37%), Positives = 372/686 (54%), Gaps = 48/686 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA Sbjct: 1 MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + V+L +G + V+D+GRGIPVE+HP T+++++T LHAGGKFD+ +Y +SGGL Sbjct: 61 KEVSVTLLADGGVEVIDDGRGIPVEDHP--TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + + R ++ Q F+ +P + K GT+ F PDP+ Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVPEELQQV--KKARGTGTKQRFWPDPE 176 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257 IF F+ + K Q A+L+ + ++E E Sbjct: 177 IFET-VEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEK 235 Query: 258 ---------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 P F++P GLK Y+ R+ I I + ++ VE A+ W Sbjct: 236 AAEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDH---EVEVALQW 292 Query: 309 CEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + + ++ NTI T EGGTHE G R ALT + +YA + + + DD+ Sbjct: 293 NSGFSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREG 352 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ A+ + +L NP EA +++ + Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVAS 412 Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R RK R++ RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ Sbjct: 413 AHARDAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDS 472 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + LRY K+++M DA Sbjct: 473 MYQAILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGIHDEFDIKKLRYHKIVLMADA 532 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HIA+LLLT ++ M L+E+ +++L PPL+++ + +A + + + LEE Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEE 592 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 G+ KI I R+KGLGEM A +L ET MD RTL RV DL + Sbjct: 593 GLAKGR-KINKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRV----DLEDAAAADEIF 647 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI + A + + Sbjct: 648 SVLMGDDVVARRSFITKNARDVRFLD 673 >gi|227893834|ref|ZP_04011639.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] gi|227864323|gb|EEJ71744.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] Length = 654 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 247/668 (36%), Positives = 368/668 (55%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IEV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEVTVNEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V ++ Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDE 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + + GG+K Y+ + + ++ E ++ G VE A+ + + ++ N Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ A + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N + +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPIVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL +T M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWDTTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|58336359|ref|YP_192944.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM] gi|227902590|ref|ZP_04020395.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796] gi|58253676|gb|AAV41913.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM] gi|227869679|gb|EEJ77100.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796] Length = 654 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL EVIDN++DE +AG+A I Sbjct: 16 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEVIDNSIDERLAGFATKI 75 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 E++++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGV Sbjct: 76 EITINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS +L VTV R + F G +++ V ++ GT + F PDP IF Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQVGTVPLDQHGTIVHFYPDPDIF 194 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ ++ ++ ++ E + + F GG+K Y+ Sbjct: 195 TETTTFDDKILKNRIRELAFLNKGLELTFTDKRK-----ETAETDVYKFEGGIKEYVAFL 249 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + ++ E ++ G VE A+ + + ++ N I T EGG HE+G + Sbjct: 250 NEGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL + DA+ Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTKLGNSDAR 366 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V+ + + F +L++NP K++E + +R + +K+ + LPGK Sbjct: 367 TAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAKRAREVTRKKSGLEIANLPGK 426 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY M +I++ ++ Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM QL ET Sbjct: 547 YIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L RV KD + LMG + R FIQ+ A +++++ Sbjct: 605 MNPENRRLDRVSPEY----AKDADEVFELLMGNEVAPRRDFIQKNAKYVENLDA 654 >gi|161506639|ref|YP_001576587.1| DNA gyrase [Lactobacillus helveticus DPC 4571] gi|160347628|gb|ABX26302.1| DNA gyrase [Lactobacillus helveticus DPC 4571] Length = 654 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 246/668 (36%), Positives = 366/668 (54%), Gaps = 20/668 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + + + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+ID Sbjct: 2 ADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A IE++++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Sbjct: 62 NSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK-TGRPALETVFTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NK 202 Y++SGGLHGVG SVVNALS +L VTV R + F G +++ V + Sbjct: 121 GGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLEQ 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT + F PDP IF + FD L + A+L+ +K ++ ++ + E + Sbjct: 181 HGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDS-----AETDV 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + + GG+K Y+ + + ++ E ++ G VE A+ + + ++ N Sbjct: 236 YKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGG HE+G + ALTR + YA + + ++ +D+ ++SV P+F Sbjct: 293 IHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREV 438 GQTKTKL + DA+ V+ + + F +L++NP K++E + +R + Sbjct: 353 EGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVT 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ + LPGKLAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILN Sbjct: 413 RKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A ++I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT Sbjct: 473 VEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 FY M +IE+ ++++ PPL+++ QG Y +E L + K + R+K Sbjct: 533 FYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPS--PKPVVQRYK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL ET M+ R L RV KD LMG + R FIQ+ A Sbjct: 591 GLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRDFIQKNA 646 Query: 679 SFIDDVGT 686 +++++ Sbjct: 647 KYVENLDA 654 >gi|260579565|ref|ZP_05847436.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734] gi|258602336|gb|EEW15642.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734] Length = 674 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 257/686 (37%), Positives = 372/686 (54%), Gaps = 48/686 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA Sbjct: 1 MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVWEVVDNSVDEAMAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + V+L +G + V+D+GRGIPVE+HP T+++++T LHAGGKFD+ +Y +SGGL Sbjct: 61 KEVSVTLLADGGVEVIDDGRGIPVEDHP--TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS + + R ++ Q F+ +P + K GT+ F PDP+ Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVPEELQQV--KKARGTGTKQRFWPDPE 176 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257 IF F+ + K Q A+L+ + ++E E Sbjct: 177 IFET-VEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEK 235 Query: 258 ---------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 P F++P GLK Y+ R+ I I + ++ VE A+ W Sbjct: 236 AAEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDH---EVEVALQW 292 Query: 309 CEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + + ++ NTI T EGGTHE G R ALT + +YA + + + DD+ Sbjct: 293 NSGFSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREG 352 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + +P+F GQTKTKL + + + V+ A+ + +L NP EA +++ + Sbjct: 353 LAAVISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVAS 412 Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R RK R++ RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ Sbjct: 413 AHARDAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDS 472 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + LRY K+++M DA Sbjct: 473 MYQAILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGIHDEFDIKKLRYHKIVLMADA 532 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HIA+LLLT ++ M L+E+ +++L PPL+++ + +A + + + LEE Sbjct: 533 DVDGQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEE 592 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 G+ KI I R+KGLGEM A +L ET MD RTL RV DL + Sbjct: 593 GLAQGR-KINKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRV----DLEDAAAADEIF 647 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI + A + + Sbjct: 648 SVLMGDDVVARRSFITKNARDVRFLD 673 >gi|28627816|gb|AAN75468.1| DNA gyrase subunit B [Streptomyces roseochromogenes subsp. oscitans] Length = 677 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 245/680 (36%), Positives = 373/680 (54%), Gaps = 24/680 (3%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + + + P S + A+ +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL E+ Sbjct: 5 DTRTATDTPGSQQPGHVGAA-SYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQEL 63 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN++DE +AG A+ I+V++ +G + VVDNGRGIPV HP + +E++LT LHAGG Sbjct: 64 VDNSVDEALAGVADRIDVTILADGGVRVVDNGRGIPVGTHP-VEKRPAVEVVLTVLHAGG 122 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF Y +SGGLHGVG+SVVNALS L + ++Q + G P +PL + E Sbjct: 123 KFGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLARHEATSR 182 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIA 252 GT +TF D IF + L + Q A+L+ + + ++ + A Sbjct: 183 -TGTSLTFWADGDIFET-TEYSFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEA 240 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312 + + + + GG+ ++ + + + + E A+ W + Sbjct: 241 DSDPAAKTVSYRYDGGITDFVAYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQY 300 Query: 313 PE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGI 369 + + SY N I T EGGTHE G R ALT + +YA + ++ ++ +D+ I Sbjct: 301 TDSVYSYANGIHTHEGGTHEEGFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAI 360 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 +SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I+ + R Sbjct: 361 ISVKLGEPQFEGQTKTKLGNTEARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATAR 420 Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 + RK R++ R+ + LPGKL+DC N +E+F+VEGDSAGGSAK RN QA Sbjct: 421 VAARKARDLTRRKGLLETAALPGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQA 480 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548 +LP+RGKILNV A +KI +NQ+I L+ A G + LRY K+I+M DADVDG Sbjct: 481 ILPIRGKILNVEKARIDKILHNQEIQALISAFGTGVHEDFDIAKLRYHKIILMADADVDG 540 Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILEEFKKH 607 HI +LLLTF ++ M L+E+ H++L PPL++I G YA+ + + +LE ++ Sbjct: 541 QHINTLLLTFLFRFMRPLVEEGHVYLSRPPLYKIKWGRDHVEYAYSDRERDVLLERGRQD 600 Query: 608 GK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 G+ I RFKGLGEM A +L+ T MD + R L +V ++ D + LMG Sbjct: 601 GRRIKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAVADDLFSVLMGE 656 Query: 666 KADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 657 DVEARRHFIQRNAKDVRFLD 676 >gi|320009755|gb|ADW04605.1| DNA gyrase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 689 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 248/686 (36%), Positives = 369/686 (53%), Gaps = 28/686 (4%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 E S A + +YDAS+I +LEGL+ VR RPGMYIG T E+ LHHL E Sbjct: 10 ADSGNPNENIPSTAGEPGEVTASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQE 69 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV P K +E++LT LHAG Sbjct: 70 VVDNSVDEAMAGHADTIDVTIFADGGVRVVDNGRGIPVGIVP-SEGKPAVEVVLTVLHAG 128 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y +SGGLHGVG+SVVNALS + V V ++Q + G+P +PL + E Sbjct: 129 GKFGGGGYAVSGGLHGVGVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLARHEATE 188 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------- 253 GT +TF D +F + L + Q A+L+ + + ++E A+ Sbjct: 189 E-TGTSVTFWADGDVFET-TDYSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADS 246 Query: 254 -------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 +++ G+ +++ + + + + + E A+ Sbjct: 247 AEVVDVPDEESTRTVTYHYENGIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAM 306 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLM 363 W + + S+ N I T EGGTHE G R ALT + +YA + ++ ++ +D+ Sbjct: 307 QWNTQYTEGVYSFANAIHTHEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVR 366 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I Sbjct: 367 EGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGI 426 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 S R+ RK R++ R+ + LPGKL+DC N E+FIVEGDSAGGSAK R Sbjct: 427 AASTARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGR 486 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A +KI N ++ L+ A G + E LRY K+I+M Sbjct: 487 NPMYQAILPIRGKILNVEKARIDKILQNTEVQALISAFGTGVHEDFDIEKLRYHKIILMA 546 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKIL 601 DADVDG HI +LLLTF ++ M L+EQ +++L PPL++I G YA+ + + ++ Sbjct: 547 DADVDGQHINTLLLTFLFRFMRPLVEQGNVYLSRPPLYKIKWGRDDFEYAYSDRERDALV 606 Query: 602 EEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K++GK + I RFKGLGEM A +L+ T MD + R L +V ++ D Sbjct: 607 ALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDD----AAQADDLF 662 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLD 688 >gi|284988639|ref|YP_003407193.1| DNA gyrase subunit B [Geodermatophilus obscurus DSM 43160] gi|284061884|gb|ADB72822.1| DNA gyrase, B subunit [Geodermatophilus obscurus DSM 43160] Length = 680 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 238/683 (34%), Positives = 364/683 (53%), Gaps = 40/683 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +D Y SSI +LEGLE VR RPGMYIG T E+ LHH+ EV+DN++DE +AG+ Sbjct: 5 PKTDAQADAYSGSSITVLEGLEAVRKRPGMYIGSTGERGLHHMVWEVVDNSVDEALAGHC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + + V+L +G + V DNGRGIPV+ HP + T+E+++T LHAGGKFD +Y +SGGL Sbjct: 65 DTVRVTLLPDGGVRVEDNGRGIPVDMHP-VEKRPTVEVVMTILHAGGKFDGKSYAVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG++VVNALS EL V + R T + Q ++ P + + RGT+ITF DP Sbjct: 124 HGVGVTVVNALSTELDVRIWRDGTEWHQHYTASEPGPLEKVGRTTK--RGTQITFWADPG 181 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-----------------------EI 251 IF + + + Q A+L+ ++ ++ Sbjct: 182 IFETTT-YSFDTISRRLQEMAFLNQGLRIVLRDERPGQGKAETGMAEEVSLAEAAPAPTS 240 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWC 309 E P + + + GL+ ++ ++ I + E K +V+ A+ W Sbjct: 241 EEPAFEPTEITYLYEDGLRDFVAHINRTKTAIHRSVIGFSAEGTGKNDMAMSVDIAMQWS 300 Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366 E + ++ NTI T EGGTHE G R ALT + +YAE + + + +D+ Sbjct: 301 EAYSESVHTFANTINTHEGGTHEEGFRAALTSIVNRYAEDKKLFKSKDEKLTGEDIREGL 360 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 I+SV + +P+F GQTKTKL + + + V+ + H+ NP EA +++ + Sbjct: 361 AAIVSVKLGDPQFEGQTKTKLGNTEVKGFVQRVCNEQIGHWFEANPAEAKQIITKASSAA 420 Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486 R ++ R++ RK + LPGKLADC +E++IVEGDSAGGSAK R+ Sbjct: 421 RARRAAQQARQLARKNPLNSTGLPGKLADCRSTDPRNSEVYIVEGDSAGGSAKSGRDSMF 480 Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546 QA+LP+RGKI+NV A +++ N ++ ++ A G ++ LRY K+++M DADV Sbjct: 481 QAILPIRGKIINVEKARIDRVLKNTEVQSMITAFGTGIHDEFDLSKLRYHKIVLMADADV 540 Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEF 604 DG HI +LLLT ++ M L+E H++L PPL++I G K Y + ++ K+ L+ Sbjct: 541 DGQHIRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWGGKVGDEYVYTDKEKEGALKLG 600 Query: 605 KKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 + G+ + I RFKGLGEM A++L ET M+ R LL+V + + + L Sbjct: 601 AEAGRRIKDDAIQRFKGLGEMNATELWETTMNPETRVLLQVTLED----AATADELFSVL 656 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG D R FI A + + Sbjct: 657 MGEDVDARRSFITRNAKDVRFLD 679 >gi|94990278|ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270] gi|94543786|gb|ABF33834.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270] Length = 650 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTILKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTYGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|238917147|ref|YP_002930664.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] gi|238872507|gb|ACR72217.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] Length = 638 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 246/656 (37%), Positives = 352/656 (53%), Gaps = 28/656 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A++ YDA+SI ILEGLE VRMRPGMYIG K L+HL E+ DN++DE +AG+ I V Sbjct: 2 AANKYDANSISILEGLEAVRMRPGMYIGSVGTKGLNHLIYEIADNSVDEHLAGFCTQINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G T+ DNGRGIP+ HPK +E++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 TLNDDGTATIKDNGRGIPIGIHPKA-GIPAVEVVFTVLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L V + ++ Q++ RG +PLEK +N GT +TF PD +IF Sbjct: 121 SVVNALSVWLEVEIRVDGGVYKQRYERGKATAPLEKIGTCRKNDTGTTVTFLPDGEIFEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F A + AYL+ + + ++ +E E F+ P GLK Y++ Sbjct: 181 -TRFKADSIKSRLHETAYLNPGLTIEFEDKRKGSEDK-----ETFHEPDGLKAYIKDLNN 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337 + + ++ K ++ VE A + E E +CN I T EGGTH +G + Sbjct: 235 GKETVCDIVYFKKKQED----IEVEVAFQFVNEFEENILGFCNNIYTQEGGTHITGFKTK 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T I +YA + + D+ +++V P F GQTKTKL + DA Sbjct: 291 FTMIINQYARELGILKDKDANFTGLDVRNGMTAVVAVKHPAPRFEGQTKTKLDNPDAGTV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V N D Y ++ + ++ + ++ R K + + GKLA+ Sbjct: 351 VANVTGDEVQLYFDRHLDDLNAVIACAEKSAKIRKAEEKAKTNMLTKQKFSIDSNGKLAN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESKNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ + C + + LRY K+IIMTDADVDGAHI +LLLTFFY+ M +LI Q H Sbjct: 471 MINSFNCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGH 530 Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ +PPL+++ + + Y +D++ + KKH G + R+KGLGEM QL E Sbjct: 531 VYIATPPLYKVVPKKGEGEYLYDDKALEDYR---KKHTSGTFTLQRYKGLGEMDPDQLWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 T ++ R L +VEI + + T LMGT R +FI A+ + + Sbjct: 588 TTLNPETRILKQVEIEDARLATEVTA----MLMGTDVPPRREFIYTHANEAE-IDA 638 >gi|118615924|ref|YP_904256.1| DNA gyrase subunit B [Mycobacterium ulcerans Agy99] gi|118568034|gb|ABL02785.1| DNA gyrase (subunit B) GyrB [Mycobacterium ulcerans Agy99] Length = 692 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 257/703 (36%), Positives = 373/703 (53%), Gaps = 49/703 (6%) Query: 19 SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78 + + E + A + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 2 TGPRASNPEENIRTVAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLV 61 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 EV+DN++DE +AGYA + V L +G + V DNGRGIPV H T+++++T LH Sbjct: 62 WEVVDNSVDEAMAGYATQVNVRLLDDGSVEVADNGRGIPVAMH--ATGAPTVDVVMTQLH 119 Query: 139 AGGKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK 196 AGGKF +NS Y +SGGLHGVG+SVVNALS L V + R +SQ + R P + K+ Sbjct: 120 AGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQPGTL--KQ 177 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY- 255 + K GT I F DP IF +D + + Q A+L+ + + ++ ++ Sbjct: 178 GEATKKTGTAIRFWADPDIFET-TEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVV 236 Query: 256 ------------------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK 291 + F++PGGL +++ +S I I + Sbjct: 237 DDVVSDTAEAPKSAQEKAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFE 296 Query: 292 TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AEL 348 + G VE A+ W + ++ NTI T EGGTHE G R ALT + KY + Sbjct: 297 GKGSGH---EVEIAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKK 353 Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 + ++ DD+ ++SV + EP+F GQTKTKL + + + V+ + H+ Sbjct: 354 LLKDKDPNLTGDDIREGLAAVISVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWF 413 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELF 467 NP EA ++ + ++ RL RK RE V RK+A LPGKLADC +EL+ Sbjct: 414 EANPSEAKTIVNKAVSSAQARLAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELY 473 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 +VEGDSAGGSAK R+ QA+LPLRGKI+NV A +++ N ++ ++ ALG + Sbjct: 474 VVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE 533 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT- 586 + LRY K+++M DADVDG HI++LLLT ++ M LIE H+FL PPL+++ Sbjct: 534 FDLSKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRT 593 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLR 642 + +A+ + + +LE K GK KI I R+KGLGEM A +L ET MD + R L + Sbjct: 594 EPEFAYSDRERDGLLEAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQ 652 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ + + LMG D R FI A + + Sbjct: 653 VTLDD----AAAADELFSILMGEDVDARRSFITRNAKDVRFLD 691 >gi|269977746|ref|ZP_06184706.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1] gi|269934050|gb|EEZ90624.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1] Length = 671 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 251/676 (37%), Positives = 356/676 (52%), Gaps = 38/676 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL EV+DN++DE +AGY + I Sbjct: 5 EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF S+Y +SGGLHGV Sbjct: 65 EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS ++ TV R + +F G ++ ++ K + GT F PDP IF Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261 FD L Q A+L+ ++ + ++ G Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGHRHV 242 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 + + GL Y+ + E +E A+ W I +Y N Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 TI T EGGTHE G R ALT + KYA + ++ DD ++SV +R P+ Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKTKL + +A+ V+ + + +P EA +L R RK R+ Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RKTA+ +PGKL DCS A E+FIVEGDSAGGSA R+ ++QA+LPLRGKIL Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +K +N++I L+ A G + LRY K+++M DADVDG HI +LLLT Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609 ++ M LIE+ H+FL +PPL+R+ + + + ++ K+K+L+ K G Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM +L ET MD R L +V +++ ++ LMG Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 655 RRSFIQRNAQDVRFLD 670 >gi|256847177|ref|ZP_05552623.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715841|gb|EEU30816.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis 101-4-CHN] Length = 670 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 244/656 (37%), Positives = 366/656 (55%), Gaps = 34/656 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 YD+SSI+IL+GLE VR RPGMYIG TD LHHL E++DN++DE ++GY + I Sbjct: 3 KKEYQYDSSSIKILKGLEAVRKRPGMYIGSTDTYGLHHLVYEIVDNSVDEALSGYGDEIN 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGV 157 V++ + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGV Sbjct: 63 VTIGADNSITVQDHGRGMPVGMH--ASGKPTPEVIMTVLHAGGKFGQADGYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS L +T+ R + + +KF G P+ L+K K ++ GT ++F+PDP IF Sbjct: 121 GASVVNALSTNLTLTIVRDHVRYQEKFKDGGQPVGTLKKLGKTKDSSGTTVSFKPDPAIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 +D L + + A+L ++ + + E+ F + G+K +++ Sbjct: 181 STTV-YDYNTLARRLRESAFLLKGLRITLTDQRPGQEQSQT-----FQYENGIKDFVEYL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ + + T ++ G V+ A + + E S+ N + T +GGTHE+G R Sbjct: 235 NEDKDTLGKIL-TFTGKQDGV---EVDVAAQYNDGYSENVLSFVNNVRTPDGGTHEAGFR 290 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 A T+ YA T + ++ D+ ++SV I E +F GQTK KL + + Sbjct: 291 SAWTKSFNDYARKTNLLKDRDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPE 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---R 448 A++ V+N + + ++ L++N A L+ ++ + R RK R+++R R Sbjct: 351 ARKIVDNIVSEQLNYALLENGDFAQMLIRKAVKARQAREAARKARDLSRNGKKRSRKERN 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + Sbjct: 411 LSGKLTPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVL 470 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N+++ ++ +G S++ D Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 471 KNEELNTIIYTVGAGVGSEFNVADSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIE 530 Query: 569 QKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +++ PPL+R+ QG K YA E K+ ++ K + RFKGLGEM Sbjct: 531 AGKVYIALPPLYRLQQGRGAKNKITYAWTNEELTKLTKKMGKTA----SLQRFKGLGEMN 586 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ RTL+RV+IN + + + LMG K + R ++I++ F Sbjct: 587 ADQLWETTMNPETRTLIRVQIND----AQLAEKRVTTLMGNKVEPRREWIEKNVQF 638 >gi|227496601|ref|ZP_03926879.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226833881|gb|EEH66264.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 690 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 252/694 (36%), Positives = 368/694 (53%), Gaps = 34/694 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 S++ + S Y AS I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 2 SDQDQPVTTPEAGAEAHIGHPSGEYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EV+DN++DE +AG+ + IEV++ +G L VVDNGRGIPV+ HP ++ T+E+++T LHA Sbjct: 62 EVVDNSVDEALAGFCDHIEVTIQADGGLKVVDNGRGIPVDEHP-TEHRPTVEVVMTVLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y +SGGLHGVGISVVNALS + V RQ ++ F G + Sbjct: 121 GGKFGGGGYAVSGGLHGVGISVVNALSTRVDTEVRRQGHVWRMSFGDGGHPKTPLVMGEE 180 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY---- 255 GT F PDP+IF FD L + Q A+L+ ++ + ++E Sbjct: 181 TEATGTTQIFYPDPEIFET-VQFDYETLRRRFQQMAFLNKGLRITLTDEREGVNDDGDEI 239 Query: 256 ------------GIPEKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEK--KGTHR 299 + + + GL Y+ +++ LI EI + EK TH Sbjct: 240 TGDEAGTADDPVKGKRQVSYCYANGLHDYVAFLNKSKKVELIHPEIIDFEAEKALDETHG 299 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 ++E A+ W + +Y NTI T EGGTHE G R ALT I KY R + Sbjct: 300 ISLEIAMQWTSAYSESVHTYANTINTTEGGTHEEGFRTALTTLINKYGREKGLIKDRDDN 359 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + DD+ ++SV + EP+F GQTKTKL + +A+ V+ + D +L +P +A Sbjct: 360 LTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNTEARTFVQQTVYDRLGDWLDSHPADAK 419 Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++ + + R+ RK RE R+ + +PGKL DCS A E+FIVEGDSAG Sbjct: 420 AVITKASQAAAARVAARKAREATRRKGVLESASMPGKLRDCSSRNAAECEIFIVEGDSAG 479 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSA R+ +QA++P+RGKILNV A ++ ++ I L+ A G + LRY Sbjct: 480 GSAVGGRDPEHQAIMPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRY 539 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDE 594 K++IM DADVDG HIA+LLLT ++ M LIEQ H ++ PPL+R+ + +A+ + Sbjct: 540 GKIVIMADADVDGQHIATLLLTLLFRYMRPLIEQGHTYIAMPPLYRLKWSNAEHEFAYSD 599 Query: 595 EHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++L + G+ + I R+KGLGEM +L ET MD R L +V +++ Sbjct: 600 AERDQLLRAGAEAGRRLPKEGGIQRYKGLGEMNDHELWETTMDPAARILKQVTLDE---- 655 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D ++ + LMG ++R FIQ A+ + + Sbjct: 656 AADADETFSILMGDDVEQRRSFIQRNAADVRFLD 689 >gi|222097051|ref|YP_002531108.1| DNA topoisomerase iv subunit b [Bacillus cereus Q1] gi|221241109|gb|ACM13819.1| DNA topoisomerase IV, B subunit [Bacillus cereus Q1] Length = 640 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 238/642 (37%), Positives = 356/642 (55%), Gaps = 36/642 (5%) Query: 52 LEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVD 111 LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V + + ++V+D Sbjct: 2 LEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHKDNSISVID 61 Query: 112 NGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHV 171 GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVVNALS+ L V Sbjct: 62 KGRGMPTGMHK--LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVV 119 Query: 172 TVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 T+ R I+ Q+F G +P++ LEK K + GT + F+PD IF ++ L + Sbjct: 120 TIKRDGNIYEQRFENGGVPVTTLEKIGKTKE-SGTTMHFKPDTTIFSTTN-YNYETLCER 177 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + A+L +K ++ E + F++ G++ ++ E + I + Sbjct: 178 LRESAFLLKGMKISIKDERNDLE-------DVFHYETGIEAFVSYLNEEKDSIHPVV-YF 229 Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL- 348 E+ G E A + + I S+ N + T +GGTHE+G + A+TR +YA Sbjct: 230 TGEQNGI---EAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 286 Query: 349 -TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFD 405 ++ ++ D+ I+SV + E +F GQTK KL + +A+ +++ + + Sbjct: 287 SLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 346 Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAH 462 ++L +NP AT L+ I+ ++ R RK RE R +K L GKL Sbjct: 347 YFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 406 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I ++ A+G Sbjct: 407 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 466 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 +++ ED+ Y+KV+IMTDAD DGAHI LLLTFFY+ M LIE +F+ PPL+++ Sbjct: 467 GVGNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKV 526 Query: 583 TQGTKS----VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 ++G YA ++ ++ ++ K + R+KGLGEM A QL ET M+ R Sbjct: 527 SKGKGKSEVIEYAWSDDELDEVTKKVGK----GYMLQRYKGLGEMNADQLWETTMNPETR 582 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 TL+RV+I+ + + LMG K + R K+I+ F Sbjct: 583 TLIRVKIDD----AARAERRVTTLMGDKVEPRRKWIERNVQF 620 >gi|306817507|ref|ZP_07451251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] gi|304649731|gb|EFM47012.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] Length = 671 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 251/676 (37%), Positives = 357/676 (52%), Gaps = 38/676 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL EV+DN++DE +AGY + I Sbjct: 5 EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF S+Y +SGGLHGV Sbjct: 65 EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS ++ TV R + +F G ++ ++ K + GT F PDP IF Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP----------------EKE 261 FD L Q A+L+ ++ + ++ G Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGHRHV 242 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 + + GL Y++ + E +E A+ W I +Y N Sbjct: 243 SYCYENGLHDYVRFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 TI T EGGTHE G R ALT + KYA + ++ DD ++SV +R P+ Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKTKL + +A+ V+ + + +P EA +L R RK R+ Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RKTA+ +PGKL DCS A E+FIVEGDSAGGSA R+ ++QA+LPLRGKIL Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +K +N++I L+ A G + LRY K+++M DADVDG HI +LLLT Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609 ++ M LIE+ H+FL +PPL+R+ + + + ++ K+K+L+ K G Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM +L ET MD R L +V +++ ++ LMG Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 655 RRSFIQRNAQDVRFLD 670 >gi|307699824|ref|ZP_07636875.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16] gi|307614862|gb|EFN94080.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16] Length = 671 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 250/676 (36%), Positives = 356/676 (52%), Gaps = 38/676 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++YDA+ I +LEGLE VR+RPGMYIG T E+ LHHL EV+DN++DE +AGY + I Sbjct: 5 EKPEEHYDAADITVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDHI 64 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF S+Y +SGGLHGV Sbjct: 65 EVTLQADGSVKVCDNGRGIPVAEHP-TEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 123 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS ++ TV R + +F G ++ ++ K + GT F PDP IF Sbjct: 124 GISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDPAIFE 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK----------------EIAEKYGIPEKE 261 FD L Q A+L+ ++ + ++ + Sbjct: 184 T-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKIGHRHV 242 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCN 320 + + GL Y+ + E +E A+ W I +Y N Sbjct: 243 SYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYTYAN 302 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 TI T EGGTHE G R ALT + KYA + ++ DD ++SV +R P+ Sbjct: 303 TINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLRTPQ 362 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKTKL + +A+ V+ + + +P EA +L R RK R+ Sbjct: 363 FEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKARDA 422 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RKTA+ +PGKL DCS A E+FIVEGDSAGGSA R+ ++QA+LPLRGKIL Sbjct: 423 TRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRGKIL 482 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 NV A +K +N++I L+ A G + LRY K+++M DADVDG HI +LLLT Sbjct: 483 NVEKARLDKALDNKEIQALITAFGTGIGEDFDLGKLRYYKIVLMADADVDGQHITTLLLT 542 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILE-------EFKKHGK 609 ++ M LIE+ H+FL +PPL+R+ + + + ++ K+K+L+ K G Sbjct: 543 LLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLPKEGG 602 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM +L ET MD R L +V +++ ++ LMG Sbjct: 603 ----IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDE----AASADETFALLMGEDVAS 654 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + + Sbjct: 655 RRSFIQRNAQDVRFLD 670 >gi|104773262|ref|YP_618242.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422343|emb|CAI96851.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 653 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 370/660 (56%), Gaps = 20/660 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +A Sbjct: 9 KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A IEV+++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 69 GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG SVVNALS +L+VTV R + F G + L++ V + GT + F Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF + FD L + A+L+ +K ++ + E ++F GG+K Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKR-----NDTAETYVYHFEGGIK 242 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + ++ E + + +G VE ++ + + ++ N I T EGG Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G + ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 300 HEAGFKTALTRVINDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKL 359 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + DA+ V+ A + F +L++NP A K++E + +R + +K+ + Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLAD + N + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M + Sbjct: 480 ILANQEIRTLFTALGAGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I++ ++++ PPL+++ QG Y +E L + K + R+KGLGEM A Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L RV D KD + LMG + R KFI++ A +++++ Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653 >gi|222479425|ref|YP_002565662.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452327|gb|ACM56592.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239] Length = 645 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 252/651 (38%), Positives = 368/651 (56%), Gaps = 18/651 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I++LEGL+ VR RP MYIG TD + LHHL EV+DN++DE +AGY + I V++ Sbjct: 5 SEYGAGQIQVLEGLQAVRKRPAMYIGSTDGRGLHHLVYEVVDNSIDEALAGYCDDITVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V D+GRGIPV+ H K+ ++ LE+I+T LHAGGKFD+ +Y++SGGLHGVG+SV Sbjct: 65 HDDNSVSVSDDGRGIPVDIHEKY-DRPALEVIMTILHAGGKFDSKSYQVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGD 218 VNALS+ L V V R ++ +F+RG P ++ + GT I F PD +IF Sbjct: 124 VNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTYIRFWPDEEIFET 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ + L + A+L+ V +++ ++E F + GG++ ++ E Sbjct: 184 -TAFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYEGGIREFVGYLNE 242 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVA 337 R+ I E+ + E H VE A+ EE + ++ N I T EGGTH +G + A Sbjct: 243 ARTPIHDEVIYFEDEDDDIH---VEVAMQATEELQGSVHAFANNINTREGGTHLTGFKTA 299 Query: 338 LTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + YA ++ +D+ ++SV +P+F GQTKTKL + + + Sbjct: 300 LTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGI 359 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE+A D + +NP A K++ E + R +K E RK+A+ LPGKLA Sbjct: 360 VESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPGKLA 419 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC ELF+VEGDSAGGSAKQ RNR NQA+LPL+GKILNV ++I N +I Sbjct: 420 DCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKHRLDRILENDEIR 479 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+G ++ +D+RY K+IIMTDADVDGAHI +LLLT Y+ M L+E +++ Sbjct: 480 ALITAIGAGIGEEFDIDDVRYNKIIIMTDADVDGAHIRTLLLTLLYRHMKPLLEAGYVYA 539 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ ++ A E + +I+ E ++ RFKGLGEM QL +T MD Sbjct: 540 AQPPLYRVRYRGETYDAMTEAERDRIVAEECDGNPA--QVQRFKGLGEMNPDQLWDTTMD 597 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L R+ I+ N LMG + R +FI+E A+ + V Sbjct: 598 PENRRLKRINIDD----AAAADRMFNVLMGDAVEPRKQFIKEHATEAEWVD 644 >gi|209559258|ref|YP_002285730.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes NZ131] gi|209540459|gb|ACI61035.1| Topoisomerase IV subunit B [Streptococcus pyogenes NZ131] Length = 649 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 243/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|67459380|ref|YP_247004.1| DNA topoisomerase IV subunit B [Rickettsia felis URRWXCal2] gi|75536199|sp|Q4UKT4|PARE_RICFE RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|67004913|gb|AAY61839.1| DNA topoisomerase IV, B subunit [Rickettsia felis URRWXCal2] Length = 662 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 335/660 (50%), Positives = 449/660 (68%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVP--SDIPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ +LI EIF+G E + + + I SYCNT+ T +GGTH Sbjct: 246 YLSSKITLDNLIIPEIFSGNIESTPDEIKLEWAICWQNNDNSAFIQSYCNTVPTPQGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSN 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKNISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTTPGGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y+EE+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 486 QAIQDLEIALACGSLKNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I+++ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661 >gi|21910160|ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315] gi|21904353|gb|AAM79231.1| putative DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315] Length = 650 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|291297295|ref|YP_003508693.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279] gi|290472254|gb|ADD29673.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279] Length = 643 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 268/656 (40%), Positives = 371/656 (56%), Gaps = 29/656 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +YDAS+I++L+GLE VR RP MYIGGT HHLF E++DNA+DE +AG+A Sbjct: 2 STDLTTSYDASAIKVLKGLEGVRHRPAMYIGGTQADGYHHLFKEILDNAVDEALAGFATE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I +L +G +TV DNGRGIPV+ P+ K +E+I T LHAGGKF+ Y++SGGLHG Sbjct: 62 IVTTLHPDGSITVEDNGRGIPVDIMPE-EQKPAVEVIYTVLHAGGKFEEGAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG SVVNALS+ V V R +FSRG PL+ + + KRGTR+TF PDP+I Sbjct: 121 VGASVVNALSEFTRVEVFRDGKHHLIEFSRGEVTRPLQVVGEAPKGKRGTRVTFLPDPQI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG + F+A+RL + ++L +K + + E E F+ GG+ ++ + Sbjct: 181 FGSEQKFEASRLRVRLREVSFLVAGLKLVFKDEIHQKE-------EVFFDKGGVASFAKF 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGL 334 + + L+ + + + + VE + + S+ N I T +GGTH SG Sbjct: 234 RADGEELLYDKPVLLQGQVEAV---GVEVGLVHTKGYSADLVSFANMIPTVDGGTHVSGF 290 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 + A TR I YA+ + + DDL+ ++SV I +P+F GQTK KL++ +A Sbjct: 291 KTAYTRAINTYAKKAGLVKDLEPTGDDLLEGLSCVISVKIPQPQFEGQTKGKLLNPEAGT 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + F YL +NP A + E ++ R RK RE V R + LPGKL Sbjct: 351 AVSRVVYEKFSEYLEENPRIAKMIYEKAQRAAQAREAARKARELVRRANPLESDDLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC ELFIVEGDSAGGSAK R+R QA+LPLRGKILNV AG K N ++ Sbjct: 411 ADCQSEDPAEAELFIVEGDSAGGSAKSGRDRRFQAILPLRGKILNVEKAGLNKALKNAEV 470 Query: 514 MDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +V A+G + + EDLRY K+IIMTDADVDG+HI +LLLTFFY+ M +I Sbjct: 471 RAMVAAIGAGIGGKDNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPII 530 Query: 568 EQKHLFLISPPLF--RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 E+ +L++ PPL+ R+ + + Y D+E +K L G EI RFKGLGEM A Sbjct: 531 ERGYLYVAQPPLYGLRVGKSKQMEYIFDDEALKKALANI---GDKPYEIQRFKGLGEMNA 587 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 QL ET MD +R L +V D+ + LMG+ R +FI+E A F Sbjct: 588 EQLWETTMDPARRVLKKV----DMKDASYAAQIFDDLMGSDVQPRREFIEENARFA 639 >gi|325685102|gb|EGD27233.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 653 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +A Sbjct: 9 KKAKQFEQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A IEV+++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 69 GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG SVVNALS +L+VTV R + F G + L++ V + GT + F Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF + FD L + A+L+ +K ++ ++ E + ++F GG+K Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + ++ E + + +G VE ++ + + ++ N I T EGG Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G + ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 300 HEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + DA+ V+ A + F +L++NP A K++E + +R + +K+ + Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLAD + N + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NQ+I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M + Sbjct: 480 ILANQEIRTLFTALGTGFGADFDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I++ ++++ PPL+++ QG Y +E L + K + R+KGLGEM A Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L RV D KD + LMG + R KFI++ A +++++ T Sbjct: 598 QLWETTMDPENRRLDRV----DPEYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDT 653 >gi|313126396|ref|YP_004036666.1| DNA gyrase subunit b [Halogeometricum borinquense DSM 11551] gi|312292761|gb|ADQ67221.1| DNA gyrase subunit B [Halogeometricum borinquense DSM 11551] Length = 637 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 251/651 (38%), Positives = 371/651 (56%), Gaps = 24/651 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AGY + I VS Sbjct: 4 ESEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCDEIGVS 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V DNGRGIPV+ H ++ ++ +E+I+T LHAGGKFDN +Y++SGGLHGVG+S Sbjct: 64 VHEDGSVSVTDNGRGIPVDTHEQY-DRPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVS 122 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFG 217 VVNALS+ L V + R ++ +F +G P ++ + GT I F+PD IF Sbjct: 123 VVNALSEWLEVEIKRDGALWRHRFDQGEPDQEAFERVRDLESDEDTGTTIRFKPDGDIFE 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L + A+L+ V+ + D E+ FYF GG++ +++ Sbjct: 183 T-LEFDFTTLENRLRELAFLNSGVEISLADD-------DADEQSSFYFEGGIREFVRYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRV 336 E +S + ++ E +G VE A+ EE I ++ N I T EGGTH +G + Sbjct: 235 ETKSTLHDDVIYYDDEDEGI---EVEVAMQATEELQGSIHAFANNINTREGGTHLTGFKT 291 Query: 337 ALTRGIKKYAELTQNKRAISI-ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 ALTR + YA + +D+ ++S+ +P+F GQTKTKL + + + Sbjct: 292 ALTRVVNDYARSNNLLDDLDSLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGI 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE+ + Y +NP A ++ +E ++ R +K E RK+A+ LPGKLA Sbjct: 352 VESVTHEQLGTYFEENPGTAQAIVMKAVEAAKARRAAKKAEELTRRKSALESTALPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC +ELF+VEGDSAGGSAKQ R+R QA+LP++GKILNV ++I N ++ Sbjct: 412 DCQSRDPSESELFVVEGDSAGGSAKQGRDRKFQAILPIKGKILNVEKHRLDRILENNEVR 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+G ++ +D+RYE++I+MTDADVDGAHI +LLLT Y+ M LIE +++ Sbjct: 472 ALITAIGAGIGEEFDIDDVRYERIILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ ++ A EE + +I+EE K ++ RFKGLGEM QL +T M+ Sbjct: 532 AQPPLYRVRYRGETYDAMTEEERDRIVEE--KCDGNPTQVQRFKGLGEMNPEQLWDTTMN 589 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L R+ I N LMG + R +FI+E A+ + V Sbjct: 590 PDNRVLKRINIED----AAAADRMFNVLMGDAVEPRKQFIKEHATEAEWVD 636 >gi|15892232|ref|NP_359946.1| DNA topoisomerase IV subunit B [Rickettsia conorii str. Malish 7] gi|81528439|sp|Q92IW1|PARE_RICCN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|15619368|gb|AAL02847.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7] Length = 662 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 338/661 (51%), Positives = 456/661 (68%), Gaps = 14/661 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I +++ + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W+C+ E+ + IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329 YL +K+ +L+ IF G E K + R +EWAI W + SYCNT+ T +GGT Sbjct: 246 YLSSKITLDNLVIPGIFAGNIESK-SDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRL Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K+ YA DEE K K++++ K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLMDKLLKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684 ET M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660 Query: 685 G 685 Sbjct: 661 D 661 >gi|225868765|ref|YP_002744713.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus] gi|225870279|ref|YP_002746226.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047] gi|225699683|emb|CAW93393.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047] gi|225702041|emb|CAW99644.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus] Length = 650 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 372/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG + L T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAIIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E+ E F++ GG+ +Y+ Sbjct: 187 ETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLERE-----EHFHYEGGIGSYVAFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G TVE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFDTPIYSDGELEGI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGAEFDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE G+ + I R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEELKAALER-HSTGRSRPTIQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + R + RV ++ + + LMG + + R +FI+E A + Sbjct: 598 WETTMDPDNRLMARVTVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 645 >gi|289167707|ref|YP_003445976.1| DNA gyrase, B subunit [Streptococcus mitis B6] gi|288907274|emb|CBJ22109.1| DNA gyrase, B subunit [Streptococcus mitis B6] Length = 648 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 373/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ IEV Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIEVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E VE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---AVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKISN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEF---KKHGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARHSEGRAKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus] Length = 640 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 374/655 (57%), Gaps = 20/655 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A ++ + +DNY A I++LEGLE VR RPGMYIG T + H+ E++DN++DE +AG Sbjct: 3 TALSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTQRE--LHISVEIVDNSIDEALAG 60 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YAN IEV ++ + ++ V DNGRGIPV+ K + +E+ILT LHAGGKF Y++SG Sbjct: 61 YANKIEVVIEKDNWIKVTDNGRGIPVDIQEKM-GRPAVEVILTVLHAGGKFGGGGYKVSG 119 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG SVVNALS +L V V R TI+ Q + +G+P L++ +K GT I F+ D Sbjct: 120 GLHGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKAD 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IF + ++ L + + A+L+ ++ +++ ++ +++ GG+K+Y Sbjct: 179 GEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEE----NVREDSYHYEGGIKSY 234 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ EN+ I E K VE AI + + +Y N I T EGGTHE Sbjct: 235 VELLNENKEPIHDEPIYIHQSKDDI---EVEIAIQYNSGYATNLLTYANNIHTYEGGTHE 291 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G + ALTR + Y ++ + +D I+S+ +P+F GQTKTKL + + Sbjct: 292 DGFKRALTRVLNSYGLSSRYEEEKIASGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLP 450 ++ V+ + F+ +L +NP A ++E ++ ++ + RK+A+ LP Sbjct: 352 VRQVVDKLFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS E+F+VEGDSAGGS K R+ QA+LPLRGKILNV A ++I NN Sbjct: 412 GKLADCSSQSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G + RY K++IMTDADVDGAHI +LLL FFY+ M LIE Sbjct: 472 NEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLIFFYRFMRPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+++TQG + Y +++ K+ E + K I+ +KGLGEM A QL E Sbjct: 532 YVYIAQPPLYKLTQGKQKYYVYNDRELDKLKSEL--NPTPKWSIALYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R LL+V++ + + + LMG + R +FI++ A + ++ Sbjct: 590 TTMNPEHRALLQVKLEDAI----EADQTFEMLMGDVVENRRQFIEDNAVYA-NLD 639 >gi|322392250|ref|ZP_08065711.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus peroris ATCC 700780] gi|321144785|gb|EFX40185.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus peroris ATCC 700780] Length = 648 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 251/652 (38%), Positives = 374/652 (57%), Gaps = 22/652 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IEVFIEPDDSITVIDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ L+ +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTGTIVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVKYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQL 628 ++ PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGSEQETRLQEALARYSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 596 WETTMNPEHRLMARVSVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 643 >gi|296167139|ref|ZP_06849546.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897461|gb|EFG77060.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 677 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 254/688 (36%), Positives = 371/688 (53%), Gaps = 49/688 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + A D Y AS+I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEIS 151 A ++V L +G + VVD+GRGIPV H T+++++T LHAGGKF +NS Y +S Sbjct: 62 ATKVDVRLLDDGSVEVVDDGRGIPVAMH--ATGAPTVDVVMTQLHAGGKFGGENSGYTVS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L VT+ R + Q + R +P + K+ + K GT I F Sbjct: 120 GGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVPGTL--KQGEATKKTGTTIRFWA 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK----------------- 254 DP+IF +D + + Q A+L+ + + ++ ++ Sbjct: 178 DPEIFET-TQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAEAPKSAE 236 Query: 255 --------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + F++PGGL +++ +S I + + G VE A+ Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGH---EVEIAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 QWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 EGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVNKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDITKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601 DADVDG HI++LLLT ++ M LIE H+FL PPL+++ +A+ + + +L Sbjct: 534 DADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTDPEFAYSDRERDGLL 593 Query: 602 EEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 E K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 EAGLKAGK-KINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADE 648 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 649 LFSILMGEDVDARRSFITRNAKDVRFLD 676 >gi|156889076|gb|ABU96689.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 239/652 (36%), Positives = 367/652 (56%), Gaps = 34/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + +L++N A+ L+ I+ R RK R+ +R K G Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVK 641 >gi|306827498|ref|ZP_07460781.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes ATCC 10782] gi|304430296|gb|EFM33322.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes ATCC 10782] Length = 650 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 371/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 642 >gi|195977899|ref|YP_002123143.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974604|gb|ACG62130.1| DNA gyrase subunit B GyrB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 650 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 371/652 (56%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVIDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG + L T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAIIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E+ E F++ GG+ +Y+ Sbjct: 187 ETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLERE-----EHFHYEGGIGSYVAFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G TVE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFDTPIYSDGELEGI---TVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE G+ + I R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGVNQEEELKAALER-HSTGRSRPTIQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + R + RV ++ + + LMG + + R +FI+E A + Sbjct: 598 WETTMDPDNRLMARVTVDD----AAEADRIFDMLMGDRVEPRREFIEENAVY 645 >gi|297584211|ref|YP_003699991.1| DNA topoisomerase IV subunit B [Bacillus selenitireducens MLS10] gi|297142668|gb|ADH99425.1| DNA topoisomerase IV, B subunit [Bacillus selenitireducens MLS10] Length = 656 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 239/649 (36%), Positives = 358/649 (55%), Gaps = 32/649 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+ +I++LEGL+ VR RPGMYIG TD + LHHL E++DN++DE++AG+ N I V++ Sbjct: 8 YNDDAIQVLEGLDAVRKRPGMYIGSTDHRGLHHLVFEIVDNSVDEILAGFGNEITVTIHK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +++ D+GRG P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVVN Sbjct: 68 DQSVSIQDSGRGFPTGMH--RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 ALS+ L VT+ R I Q+F G P + LEK K + GT + F+PD IFG F Sbjct: 126 ALSEWLEVTIYRDGVISQQRFENGGKPATTLEKVGKTKR-TGTTVHFKPDEAIFGS-ITF 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + + A+L VK ++ PE++ F F GL ++ E + + Sbjct: 184 HYDTLAERLREAAFLIKGVKIELIDER-----GDEPERDTFQFDTGLVAFVDYLNEEKDI 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + I + ++ + E + S+ N + T +GGTHE G + A+TR I Sbjct: 239 LHPVIQFEGVHDEIEVDIAFQYNDGFTE---NMLSFVNNVRTKDGGTHELGAKAAITRII 295 Query: 343 KKYAEL--TQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 ++A ++ ++ D+ GI+SV + E +F GQTK KL + +A+ V+ Sbjct: 296 NEHARKLALLKEKDKNLDGSDIREGFTGIISVRVPEEKLQFEGQTKAKLGTAEARSAVDQ 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG---KLAD 455 + +L +NP + L++ ++ S+ R RK RE R K + KL Sbjct: 356 VISGKLAFFLEENPEFSHMLIKKAVKASQAREAARKAREDARNGKKNKRKDAMLSGKLTP 415 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + EL++VEGDSAGGSAKQ R+R QAVLPLRGK++N A I N++I Sbjct: 416 AQSRNPNKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRT 475 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A+G + E++ Y+K++IMTDAD DGAHI LLLTFFY+ M L+E +++ Sbjct: 476 IIYAIGGDVGPDFDLENINYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRIYIA 535 Query: 576 SPPLFRITQ--GTKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL+++++ G K + YA DE Q +++ K + R+KGLGEM A+QL ET Sbjct: 536 LPPLYKVSRGSGKKEIVEYAWDENGLQGAIDQVGK----GYILQRYKGLGEMDATQLWET 591 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL+RV I + + ++ LMG K + R K+I+ +F Sbjct: 592 TMNPESRTLVRVTIED----VARAERHVSTLMGDKVEPRRKWIERNVAF 636 >gi|28896141|ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes SSI-1] gi|28811391|dbj|BAC64324.1| putative DNA topoisomerase IV, subunit B [Streptococcus pyogenes SSI-1] Length = 649 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 242/653 (37%), Positives = 373/653 (57%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I+V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIKVVI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R +++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 127 VNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 185 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 186 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 357 IVDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|325955726|ref|YP_004286336.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC] gi|325332291|gb|ADZ06199.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC] Length = 654 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 245/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+A I Sbjct: 16 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKI 75 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGV Sbjct: 76 EVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS +L VTV R + F G +++ V ++ GT + F PDP IF Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLSEHGTIVHFYPDPDIF 194 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ + ++ ++ + E + + F GG+K Y+ Sbjct: 195 TETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDS-----AETDVYKFEGGIKEYVAFL 249 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N+ ++ + ++ G VE A+ + + ++ N I T EGG HE+G + Sbjct: 250 NKNQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL + DA+ Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 366 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V+ + + F +L++NP K++E + +R + +K+ + LPGK Sbjct: 367 TAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGK 426 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY M +I++ ++ Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM QL ET Sbjct: 547 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L RV KD LMG + R FI++ A +++++ Sbjct: 605 MNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRSFIEKNAKYVENLDA 654 >gi|226303498|ref|YP_002763456.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4] gi|229491178|ref|ZP_04385006.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121] gi|226182613|dbj|BAH30717.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4] gi|229321916|gb|EEN87709.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121] Length = 678 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 239/688 (34%), Positives = 368/688 (53%), Gaps = 45/688 (6%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + ++S +Y+ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE + Sbjct: 2 AAQKSDTSTSSKDYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A +EV+L +G + V+D+GRGIPV H T+E++LT LHAGGKFD+ +Y + Sbjct: 62 AGHATKVEVTLLEDGGIRVIDDGRGIPVGMH--ASGVPTVEVVLTQLHAGGKFDSDSYAV 119 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVGISVVNALS L V + + Q ++ P + + GT ++F Sbjct: 120 SGGLHGVGISVVNALSTRLDVDIKVDGYRWQQTYTDSKPGEL--VQGDPTKETGTTVSFW 177 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--------------------- 249 DP+IF ++ + + Q A+L+ + + ++ Sbjct: 178 ADPEIFET-TRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEE 236 Query: 250 ---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +++PGGL+ Y++ ++++ I + + + G +E A+ Sbjct: 237 AEEAAQAAPRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGH---ELEVAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT + KY + + + DD+ Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + + + V+ A + H+ NP +A ++ + Sbjct: 354 EGLAAIISVKVGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R+ RK RE V RK+A LPGKLADC N +E++IVEGDSAGGSAK R Sbjct: 414 SSAQARVAARKARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LRY K+++M Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDIAKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600 DADVDG HIA+LLLT ++ M L+E ++L PPL+++ +G + +A+ + + + Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEHGKVYLAQPPLYKLKWQKGAQPEFAYSDRERDAM 593 Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++ E K I R+KGLGEM A +L ET MD R L V ++ + Sbjct: 594 VKAGLESGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDD----AAAADE 649 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + + Sbjct: 650 LFSVLMGEDVEARRSFITRNARDVRFLD 677 >gi|302559661|ref|ZP_07312003.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000] gi|302477279|gb|EFL40372.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000] Length = 686 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 254/703 (36%), Positives = 379/703 (53%), Gaps = 36/703 (5%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D P ++ S++ + + A + + +YDAS+I +LEGL+ VR Sbjct: 1 MADSGN------PNENIPSTDAG-----VNSAAATSGSEGTASYDASAITVLEGLDAVRK 49 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ I+V++ +G + VVDNGRGIPV Sbjct: 50 RPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGI 109 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P K +E++LT LHAGGKF Y +SGGLHGVG+SVVNALS + V V + Sbjct: 110 VP-SEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGHRW 168 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 +Q++ G+P +PL + E GT +TF D IF + L + Q A+L+ Sbjct: 169 TQEYKLGVPTAPLARHEATEE-TGTSVTFWADGDIFET-TDYSFETLSRRFQEMAFLNKG 226 Query: 241 VKTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFT 289 +K + ++E ++ + +++ GG+ +++ + + Sbjct: 227 LKINLTDERESAKATAGADEAGEDEKYEVKSVSYHYEGGIVDFVKYLNSRKGELVHPTVI 286 Query: 290 GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 + ++E A+ W + S+ N I T EGGTHE G R ALT I KYA Sbjct: 287 DLEAEDRDRHLSLEVAMQWNGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYARD 346 Query: 349 TQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + + ++ DD+ I+SV + EP+F GQTKTKL + + + V+ + + + Sbjct: 347 KRLLRDKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHLND 406 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTE 465 +L +NP EA ++ I + R+ RK R++ R+ + LPGKL+DC N E Sbjct: 407 WLDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPVKCE 466 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 +FIVEGDSAGGSAK RN QA+LP+RGKILNV A ++I NQ+I ++ A G Sbjct: 467 IFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTGVH 526 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + E LRY K+I+M DADVDG HI +LLLTF ++ M L+E H+FL PPL++I G Sbjct: 527 EDFDIERLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRPPLYKIKWG 586 Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK--GKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 YA+ + + ++E + GK + + RFKGLGEM A +L+ T MD R L + Sbjct: 587 RDDFEYAYSDRERDALIEMGRNAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQ 646 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V ++ D + LMG + R FIQ A + + Sbjct: 647 VTLDD----AAQADDLFSVLMGEDVEARRAFIQRNAKDVRFLD 685 >gi|322411915|gb|EFY02823.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 649 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 239/653 (36%), Positives = 367/653 (56%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVII 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 69 NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q F G P++ L K ++K GT +TF PD IF Sbjct: 127 VNALSAWLKVEITRDGAVYRQCFENGGKPVTTLRKVGTAPKSKSGTVVTFMPDDTIFSTI 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 240 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 241 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 296 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 297 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 356 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + +L++N A+ L+ I+ + R RK R+ +R K G Sbjct: 357 IVDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 416 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 417 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 476 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 477 EISTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 537 VYIALPPLYKMSKGKGKTEKISYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 592 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ F Sbjct: 593 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVKF 641 >gi|241760961|ref|ZP_04759050.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374580|gb|EER64041.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 660 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 338/653 (51%), Positives = 450/653 (68%), Gaps = 7/653 (1%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+ Sbjct: 7 KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IEV+LD LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N Y SGG Sbjct: 67 ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS E V VAR ++ Q FSRG+PL LE+ N+RGT ++F PD Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFG F A+L +M +SKAYL V+ W C E+A + +PEK +FPGGL YL Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + ++ R + E FTG+ G+VEWA+AW YCNTI T GGTHE Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTIPTPAGGTHEQ 304 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 GLR+AL RG++ + EL K+A I +D+++ A +LS+FIREP+F QTK +L + Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 VE A+RD FDH+L + LL +++ER +ERLRRR +R++ RKT RKLRLP Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DCSQ+ A +ELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVA+A + KI N Sbjct: 425 GKLTDCSQDTADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q+I D+ QALGC R + + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++ Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H++L PPL+R+ G K++YA D+ H+ ++ + K K+E++RFKGLGEM QL+E Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 T MD R+LLRV + KD ++ D +++LMG + + RF FIQ A+ D+ Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655 >gi|239947839|ref|ZP_04699592.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922115|gb|EER22139.1| DNA topoisomerase IV, B subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 662 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 332/660 (50%), Positives = 447/660 (67%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEINVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF K F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 DPEIFSGKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVP--SDIPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ +L+ EIF+G E + + + I SYCNT+ T +GGTH Sbjct: 246 YLSSKITLDNLVIPEIFSGNIESTLDGIKLEWAICWQNNDSSAFIQSYCNTVPTPQGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+F+ EP F GQTK KLVS Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFVAEPSFQGQTKEKLVSN 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLSKASKAKIEVGRFKGLGEMMPAQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661 >gi|260753072|ref|YP_003225965.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552435|gb|ACV75381.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 660 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 338/653 (51%), Positives = 450/653 (68%), Gaps = 7/653 (1%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+ Sbjct: 7 KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IEV+LD LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N Y SGG Sbjct: 67 ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS E V VAR ++ Q FSRG+PL LE+ N+RGT ++F PD Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFG F A+L +M +SKAYL V+ W C E+A + +PEK +FPGGL YL Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + ++ R + E FTG+ G+VEWA+AW YCNTI T GGTHE Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTIPTPAGGTHEQ 304 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 GLR+AL RG++ + EL K+A I +D+++ A +LS+FIREP+F QTK +L + Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 VE A+RD FDH+L + LL +++ER +ERLRRR +R++ RKT RKLRLP Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DCSQ+ A +ELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVA+A + KI N Sbjct: 425 GKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q+I D+ QALGC R + + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++ Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H++L PPL+R+ G K++YA D+ H+ ++ + K K+E++RFKGLGEM QL+E Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 T MD R+LLRV + KD ++ D +++LMG + + RF FIQ A+ D+ Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655 >gi|156889072|gb|ABU96687.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] gi|156889074|gb|ABU96688.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 367/652 (56%), Gaps = 34/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--AMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTI 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 188 -DFKFNTIAERLKESAFLLKNVKMSLTDLR-----GDEPIVEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ + VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDHD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PG 451 V++ + + +L++N A+ L+ I+ R RK R+ +R K G Sbjct: 358 IVDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVHTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + +EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L ET MD RTL+RV I+ L + ++ LMG KA R K+I++ Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRKWIEDNVK 641 >gi|238650411|ref|YP_002916263.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic] gi|238624509|gb|ACR47215.1| DNA topoisomerase IV subunit B [Rickettsia peacockii str. Rustic] Length = 662 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 337/661 (50%), Positives = 451/661 (68%), Gaps = 14/661 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W C+ E+ + IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWVCEVEV--QSDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329 YL +K+ +L+ EIF G E R +EWAI W + SYCNT+ T +GGT Sbjct: 246 YLSSKITLDNLVIPEIFAGNIESTPD-RIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y E+ NK+A ++ +D++ + +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRL Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684 ET M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 605 ETTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660 Query: 685 G 685 Sbjct: 661 D 661 >gi|315037235|ref|YP_004030803.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112] gi|312275368|gb|ADQ58008.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112] gi|327182554|gb|AEA31001.1| DNA gyrase subunit B [Lactobacillus amylovorus GRL 1118] Length = 654 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 365/654 (55%), Gaps = 20/654 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN++DE +AG+A I Sbjct: 16 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKI 75 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV+++ +G +TV D+GRGIPV+ K + LE + T LHAGGKF Y++SGGLHGV Sbjct: 76 EVTINEDGSVTVQDDGRGIPVDIQEK-TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIF 216 G SVVNALS +L VTV R + F G +++ V ++ GT + F PDP IF Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLSEHGTIVHFYPDPDIF 194 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD L + A+L+ + ++ ++ + E + + F GG+K Y+ Sbjct: 195 TETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDS-----AETDVYKFEGGIKEYVAFL 249 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +++ ++ + ++ G VE A+ + + ++ N I T EGG HE+G + Sbjct: 250 NKDQEVLFDDPIYVESTYNGI---DVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFK 306 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL + DA+ Sbjct: 307 TALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDAR 366 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V+ + + F +L++NP K++E + +R + +K+ + LPGK Sbjct: 367 TAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGK 426 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LAD + N +ELFIVEG+SAGGSAKQ R+R QA+LP+RGKILNV A ++I NQ+ Sbjct: 427 LADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQE 486 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L ALG + + RY K+IIMTDADVDGAHI +LLLT FY M +I++ ++ Sbjct: 487 IRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYV 546 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+++ QG Y +E L + K + R+KGLGEM QL ET Sbjct: 547 YIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETT 604 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ R L RV KD LMG + R FI++ A +++++ Sbjct: 605 MNPENRRLDRVSPEY----AKDADAVFELLMGNEVAPRRSFIEKNAKYVENLDA 654 >gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] Length = 653 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 246/664 (37%), Positives = 382/664 (57%), Gaps = 23/664 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + ++S Y + I++L+GLEPVR RPGMYIG T + LHHL E++DNA+DE AG Sbjct: 1 ESQKESASSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAG 60 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEI 150 YA+ I V L + +++ DNGRGIP + H + KS LE +LT LHAGGKF NS Y + Sbjct: 61 YASKINVVLHSDNSISITDNGRGIPTDLH-QVTKKSALETVLTVLHAGGKFGGSNSGYSV 119 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRI 207 SGGLHGVG+SVVNALS+EL VTV R + QK+SRG P++ L E + ++++GTRI Sbjct: 120 SGGLHGVGLSVVNALSEELEVTVWRDGKEYQQKYSRGNPVTTLMCYELSAESKDQKGTRI 179 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 F PD ++F + FD + + A+L+ ++ + EK E ++ G Sbjct: 180 RFWPDKEVFTTEIQFDYNTVGGRVRELAFLNPKLAISLKKEDNDPEKNQYDEH---FYAG 236 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327 GL Y+ ++ + ++ + + E G + + I Y N+I T +G Sbjct: 237 GLIEYVNWLNTDKKSLH-DVVSFRKEVDGIA-IDMALQWCSDAYSDTILGYANSIRTVDG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH G++ +LTR + + + ++ + IS+ + + I+SV + PEF GQTKT Sbjct: 295 GTHIDGVKASLTRTLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKT 354 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAI 444 +L + + ++ VE ++++ YL +P +L + +R + V +K+ + Sbjct: 355 RLGNPEVRKVVEQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVL 414 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 + LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 415 KSSSLPGKLADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDE 474 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 E + N++I +L+ ALG + + ++D LRY ++II+TDADVDGAHI +LLLTFF++ Sbjct: 475 EAMYKNEEIQNLILALGLGVKGEDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQ 534 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 L ++ +++ PPL+++ +G + Y D+ +K+ F ++ + RFKGLGEM Sbjct: 535 RALFDEGCIYVGVPPLYKVERGKQVYYCFDDAELRKVQSSFPQN--ASYNMQRFKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FI 681 + +QL ET MD +R L ++ + + + LMGT+ D R + IQ+ A + Sbjct: 593 MPAQLWETTMDPEQRLLKQLVVED----AAEASVVFSSLMGTRVDGRKELIQKAARMINV 648 Query: 682 DDVG 685 D + Sbjct: 649 DHLD 652 >gi|85057535|ref|YP_456451.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma AYWB] gi|84789640|gb|ABC65372.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma AYWB] Length = 671 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 261/681 (38%), Positives = 377/681 (55%), Gaps = 49/681 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI+ILEGLE VR RPGMYIG T +K LHHL E++DN++DE +AG+AN I + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANNITLEI 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 ++V DNGRGIPV+ HPK K +E ILTTLHAGGKFD+S+Y++SGGLHGVG SV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPK-TGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ V + I+ QK+ +GI +SPLE RGT I F DP+IF + Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNK-RGTTIQFLSDPEIFQETTI 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + Q ++L+ +K + + E F GL+ Y+ + Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFN-----FCHEKGLQDYIDFINTSHK 234 Query: 282 L--ISSEIFTGKTEKKGTHRGTVEWAIA-----------------------WCEENPEIT 316 + K +K E+ ++ +I Sbjct: 235 QIPFHEIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIF 294 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIR 375 S+ N I T EGGTHE G ++ALTR I KYA+ K+ ++S+D++ I+S+ + Sbjct: 295 SFVNNIPTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQ 354 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +P+F GQTK KL + + ++ + + YL+++P ++ K+++ + + RL ++ Sbjct: 355 DPQFEGQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRA 414 Query: 436 REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 REV R + L KLADC H +EL+IVEGDSAGGSAKQ R+ QA+LPLRGK Sbjct: 415 REVVRNKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHI 551 +LNV + KI N++I L+QA+G + + +RY K+IIMTDADVDGAHI Sbjct: 475 VLNVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHI 534 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHDEEHKQKILEEFKKHGKG 610 +LLLTFF++ +LIE+ +++ PPL++ +G + Y +DE K + F Sbjct: 535 RTLLLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDE----KTKQTFANKNSL 590 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK------DLNSLKDTQDSINKLMG 664 K R+KGLGEM +QL ET MD RTLL+ + D +L +T + N LMG Sbjct: 591 KDGFQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMG 650 Query: 665 TKADERFKFIQERASFIDDVG 685 K R FI E+A D + Sbjct: 651 EKVLPRKNFILEKALEAD-LD 670 >gi|298345811|ref|YP_003718498.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063] gi|304390485|ref|ZP_07372438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235872|gb|ADI67004.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC 43063] gi|304326241|gb|EFL93486.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 686 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 K + D+ + ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL EV+D Sbjct: 3 AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AGY + IEV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF Sbjct: 63 NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 S+Y +SGGLHGVGISVVNALS ++ TV R + +F G + ++ + + Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251 GT F PDP+IF FD L Q A+L+ ++ + ++ + Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITLTDERPNVTAEGDFVTGDQ 240 Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304 P+ + + GL Y+ + + E + + +E Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W I +Y NTI T EGGTHE G R ALT + K + ++ DD Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDD 360 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 ++SV IR P+F GQTKTKL + +A+ V+ + + +P E ++ Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + R RK R+ RKTA+ +PGKL DCS A E+F+VEGDSAGGSA Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASNCEIFLVEGDSAGGSAVA 480 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+ ++QA+LPLRGKILNV A ++ +N++I L+ A G + LRY K+++ Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599 M DADVDG HI +LLLT ++ M LIE H+FL +PPL+R+ K + + ++ K K Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600 Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ G + I R+KGLGEM A +L ET MD + R L +V +++ Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FIQ A + + Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685 >gi|320451329|ref|YP_004203425.1| DNA gyrase subunit B [Thermus scotoductus SA-01] gi|320151498|gb|ADW22876.1| DNA gyrase, subunit B [Thermus scotoductus SA-01] Length = 635 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 371/653 (56%), Gaps = 30/653 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS+I++L+GLE VR RP MYIGGT + HHLF E++DNA+DE +AGYA I +L+ Sbjct: 2 SYDASAIKVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEIVTTLN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTV DNGRGIPV+ P+ K +E+I TTLH+GGKFD+S Y++SGGLHGVG SVV Sbjct: 62 PDGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYTTLHSGGKFDSSAYKVSGGLHGVGASVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ V V R+ FSRG PL + K GTR+TF+PDP IFG+ Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLAVVGPAPKGKTGTRVTFKPDPLIFGN-QA 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD +++ + +YL ++ + E + + GG+ ++ + E Sbjct: 180 FDPSKIRARLREVSYLVAGLRLVFKDLIHGRE-------DVYLDKGGVASFAKALAEGEE 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTR 340 L+ + F K ++ VE + + EI +Y N I T +GGTH + + A +R Sbjct: 233 LLYEKPFLLKGQE---GEVEVEVGLIHTKGYNAEILTYANMIPTRDGGTHLTAFKSAYSR 289 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA+ ++ DDL+ ++SV + +P+F GQTK KL++ +A V Sbjct: 290 ALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGSAVSQ 349 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + F L +NP A + + + R+ + V R+ + LPGKLADC Sbjct: 350 VVYEKFLEILEENPRIAKTIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQ 409 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV AG K N ++ +V Sbjct: 410 TENPEEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMV 469 Query: 518 QALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 A+G + + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE+ H+ Sbjct: 470 AAIGVGIGGTGDEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHV 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ PPL+R+ G K Y + +E L+E + E+ RFKGLGEM QL ET Sbjct: 530 YIAQPPLYRLQVGKKVEYLYSDEELAARLKELEG---KSYEVQRFKGLGEMNPEQLWETT 586 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ KR L +VE+ L + + KLMG + R +FI+E A + + + Sbjct: 587 MNPEKRVLKKVELQDAL----EASELFEKLMGQEVAPRREFIEEHARYAE-LD 634 >gi|302191325|ref|ZP_07267579.1| DNA topoisomerase IV subunit B [Lactobacillus iners AB-1] gi|312872974|ref|ZP_07733034.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|312874129|ref|ZP_07734163.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d] gi|312875688|ref|ZP_07735689.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b] gi|325912715|ref|ZP_08175098.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B] gi|329920278|ref|ZP_08277062.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G] gi|311088942|gb|EFQ47385.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b] gi|311090199|gb|EFQ48609.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d] gi|311091496|gb|EFQ49880.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|325478136|gb|EGC81265.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B] gi|328936323|gb|EGG32771.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G] Length = 647 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AGY I Sbjct: 2 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 62 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + +++ K +EFY+ G+K+++ Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G + Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 529 GRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGK----GYSLQRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635 >gi|300811991|ref|ZP_07092447.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497017|gb|EFK32083.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 653 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 373/660 (56%), Gaps = 20/660 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 A + +D Y+AS I++L GLE VR RPGMYIG T + LHHL E+IDN +DE +A Sbjct: 9 KKAKQFEREADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALA 68 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A IEV+++ + +TV D+GRGIPV+ K + +E + T LHAGGKF Y++S Sbjct: 69 GFATKIEVTVNEDNSVTVQDDGRGIPVDI-EKKTGRPAVETVYTVLHAGGKFGGGGYKVS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG SVVNALS +L+VTV R + F G + L++ V + GT + F Sbjct: 128 GGLHGVGASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFW 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP IF + FD L + A+L+ +K ++ ++ E + ++F GG+K Sbjct: 188 PDPNIFTETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKD-----TAETDVYHFEGGIK 242 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 Y+ + ++ E + + +G VE ++ + + ++ N I T EGG Sbjct: 243 EYVSFLNRGQEVLFDEPIYVEGKYEGI---DVEVSLQYTTGYKTTLMTFANNIHTYEGGM 299 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G + ALTR + YA + + ++ +D+ ++SV P+F GQTKTKL Sbjct: 300 HEAGFKTALTRVVNDYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKL 359 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRK 446 + DA+ V+ A + F +L++NP A K++E + +R + +K+ + Sbjct: 360 GNSDARTAVDRAFSETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEI 419 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLAD + N + +ELFIVEGDSAGGSAKQ R+R QA+LP+RGKILNV A ++ Sbjct: 420 ANLPGKLADNTSNDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDR 479 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I NQ+I LV ALG + + RY K+IIMTDADVDGAHI +LLLT FY+ M + Sbjct: 480 ILANQEIRTLVTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPM 539 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I++ ++++ PPL+++ QG Y +E L + K + R+KGLGEM A Sbjct: 540 IDKGYVYIARPPLYQVRQGKLIKYLDTDEELHDYLGSLQPS--PKPIVQRYKGLGEMDAE 597 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET MD R L RV D KD + LMG + R KFI++ A +++++ Sbjct: 598 QLWETTMDPENRRLDRV----DPGYAKDADEVFEMLMGNEVGPRRKFIEDNAQYVENLDA 653 >gi|34580748|ref|ZP_00142228.1| DNA gyrase subunit B [Rickettsia sibirica 246] gi|28262133|gb|EAA25637.1| DNA gyrase subunit B [Rickettsia sibirica 246] Length = 662 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 337/661 (50%), Positives = 454/661 (68%), Gaps = 14/661 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I +++ + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W+C+ E+ + IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329 YL +K+ +L+ IF G E + R +EWAI W + SYCNT+ T +GGT Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRL Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684 ET M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660 Query: 685 G 685 Sbjct: 661 D 661 >gi|291320739|ref|YP_003516004.1| DNA gyrase subunit B [Mycoplasma agalactiae] gi|290753075|emb|CBH41051.1| DNA gyrase subunit B [Mycoplasma agalactiae] Length = 655 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 256/665 (38%), Positives = 363/665 (54%), Gaps = 25/665 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 +S NQS +++Y+ASSIR+LEGLE VR+RPGMYIG +K LHHL E++DN++DE + Sbjct: 5 ESTNQDNQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYAN I++++ +G++ + DNGRGIPV HP+ ST+E +LT LHAGGKFD+ Y++ Sbjct: 65 AGYANFIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRIT 208 SGGLHGVG SVVNALS + HV V R+ + F G + GT+I Sbjct: 124 SGGLHGVGASVVNALSSDFHVWVKREGHTYYAHFQNGGQTVQPLTVINDIDPSETGTKIK 183 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD I F + + AYL+ + + EEFY+ GG Sbjct: 184 FHPDFSILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDEINNT-------SEEFYYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 L Y+ E + L+ I + K + TVE A+ + T+Y N I+T Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE G AL+R I YA ++ + +D V I+SV +P F GQ Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNGLIKSENERLNKEDTSKGLVAIVSVKHPDPIFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KL + DA+ V L + Y +NPI+A +++ ++ + RL + + Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQAN 415 Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 PGKLA+C+ A EL+IVEG+SAGGSAK R+R+ QA+LPLRGK++N Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 E++ +N +I+ L+ ALG + LRY KVIIMTDADVDGAHI +LLLTFFY Sbjct: 476 KVSPERVLSNTEIISLITALGTGLNESFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + LIE +++ PPL++I Q YA+++ K IL+ + K I R+KGL Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSL--NQDSKFTIQRYKGL 593 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET M+ R + +V+I+ LMG R +FI++ A F Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649 Query: 681 IDDVG 685 + ++ Sbjct: 650 VQNID 654 >gi|262200051|ref|YP_003271259.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247] gi|262083398|gb|ACY19366.1| DNA gyrase, B subunit [Gordonia bronchialis DSM 43247] Length = 685 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 248/696 (35%), Positives = 366/696 (52%), Gaps = 49/696 (7%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + + + + S Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN+ Sbjct: 2 ADSKDTAGSKSKSKKSGEYSADSISILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGYA+ +EV+L +G + VVD+GRGIP + H T+E+++T LHAGGKFD+ Sbjct: 62 VDEAMAGYASKVEVTLLEDGGVEVVDDGRGIPTDMH--ATGSPTVEVVMTQLHAGGKFDS 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 Y +SGGLHGVGISVVNALS ++ + + + Q + P + K GT Sbjct: 120 DAYAVSGGLHGVGISVVNALSTKVELEINYGGFHWEQTYDHAKPQPLEK--GDATRKTGT 177 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------------- 249 + F PDP+IF F A + + Q A+L+ + + + Sbjct: 178 LVRFWPDPEIFETTV-FSAETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDES 236 Query: 250 -----------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 E + P+ +++P GL Y++ + I + + + G Sbjct: 237 VADAAETVKTEEEKKADAKPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGH- 295 Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355 VE A+ W + ++ NTI T EGGTHE G R ALT + KYA + ++ Sbjct: 296 --EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDG 353 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + DD+ ++SV + +P+F GQTKTKL + + + V+ + H+ NP EA Sbjct: 354 KLTGDDIREGLAAVISVKVGDPQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEA 413 Query: 416 TKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 +++ ++ S+ RL RK RE V RKTA LPGKLADC N E++IVEGDSA Sbjct: 414 KIIIKKAVDSSQARLAARKARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSA 473 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAK R+ QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LR Sbjct: 474 GGSAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLR 533 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS-VYAHD 593 Y K+++M DADVDG HI++LLLT ++ M LIE H++L PPL+++ + +A+ Sbjct: 534 YHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGHVYLAQPPLYKLKWQKREPEFAYS 593 Query: 594 EEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649 + + +LE + G KI I R+KGLGEM A +L ET MD R L +V ++ Sbjct: 594 DRERDGLLEAGRTAG-WKINTDDGIQRYKGLGEMNAKELWETTMDPEVRVLRQVTLDD-- 650 Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 651 --AAAADELFSILMGEDVAARRSFIARNAKDVRFLD 684 >gi|223984216|ref|ZP_03634364.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM 12042] gi|223963831|gb|EEF68195.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM 12042] Length = 638 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 365/651 (56%), Gaps = 32/651 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD +SI+ILEGLE VR RPGMYIG TD + LHHL E +DNA+DE + G+ I Sbjct: 2 AKTQKYDENSIQILEGLEAVRKRPGMYIGSTDSRGLHHLVWETVDNAIDEALNGFGKKIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGV 157 ++L+ NG + V D GRG+P+ H T+++I T LHAGGKF + Y+ SGGLHGV Sbjct: 62 ITLEKNGAVCVEDEGRGMPIGMH--ASGVPTIQVIFTVLHAGGKFSSEGGYKTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ + VTV ++ + S +F G + LEK K G++I F PD +IF Sbjct: 120 GASVVNALSEWVEVTVCQEGQMVSMRFEDGGKKVGKLEKLGKSTK-TGSKIRFMPDKRIF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F+A + + + A+L + ++ + E F++ GLK +L+ Sbjct: 179 STI-EFNAGLICERARENAFLLKNITMVVKDERS-------GKTETFHYEDGLKAFLEYL 230 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336 E+R+++ + + ++ + + S+ N + T +GGTHE G R Sbjct: 231 HEDRTVLHDPVVFTGMANDIEVQCAFQYTD---DYQESMVSFVNLVRTKDGGTHEMGFRT 287 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 A T+ YA ++ + D+ I+SV I E +F GQTK KL + +A Sbjct: 288 AFTKAFNDYARKLGLLKEKDKNFEGSDVREGLTSIVSVSIPENLLQFEGQTKGKLGTAEA 347 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449 + VE+ + D YL +N +T L++ + + S+ R RK RE RK L Sbjct: 348 KSAVESLVGDKLSFYLEENKELSTMLIKKMQKASQAREAARKAREEARKGKKAGKSEKVL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKLA A ELF+VEGDSAGGSAKQ R+ QA+LPLRGK+LN AG +I Sbjct: 408 SGKLAPAQSKDASRKELFLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKAGLSEIEK 467 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N+++ +V ALG S + D Y K+IIMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 NEELNTIVHALGAGIGSGFDYSDSNYNKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIEH 527 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+++T+G + YA+ +E ++ +++ GK+EI R+KGLGEM ASQL Sbjct: 528 GMVYIALPPLYKVTKGKQLRYAYTDEELDEVKQQW-----GKVEIQRYKGLGEMNASQLW 582 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD RTL++V I + + +++ LMG KA+ R +I++ +F Sbjct: 583 ETTMDPESRTLIQVSIEDAV----QAERNVSILMGDKANLRRTWIEQNVAF 629 >gi|209559109|ref|YP_002285581.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131] gi|209540310|gb|ACI60886.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131] Length = 650 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|209544317|ref|YP_002276546.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209531994|gb|ACI51931.1| DNA topoisomerase IV, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 678 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 348/686 (50%), Positives = 462/686 (67%), Gaps = 15/686 (2%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 + DLFS P+ + + P A YDAS+I +LEGLEPVR RPGM Sbjct: 2 NDDLFSAARPKREPRGRAAASAPPAPV-----RDDAGGEYDASAIEVLEGLEPVRRRPGM 56 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIGGTDE A HHL SE++DNAMDE +AG+A I+V+L+ +LT+ DNGRGIPV+ HPKF Sbjct: 57 YIGGTDEGAYHHLASEILDNAMDEAVAGHATTIDVTLEAGDWLTIRDNGRGIPVDPHPKF 116 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 ++S LE+ILTTLHAGGKF Y SGGLHGVG SVVNAL+ + V VAR ++ Q + Sbjct: 117 KDRSALEVILTTLHAGGKFSGKAYATSGGLHGVGSSVVNALAARMEVEVARDRAVWRQVY 176 Query: 185 SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 RG P++ LEK +N+RGT+I F PDP+IFG F ARL ++ +SKAYL V Sbjct: 177 ERGHPVTVLEKVGATQNRRGTQIRFTPDPQIFGRIH-FSPARLYRLCRSKAYLFRGVTIR 235 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRG 300 WSCD + IP + +FPGGL L+ +L N + + +E+++G+ + G G Sbjct: 236 WSCDPALVRDADIPAEAVLHFPGGLADSLRDELGNAA-LLTEMWSGEADLPVGPDGADTG 294 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIIS 359 +EWA+A+ E SYCNTI T +GGTHE+G R AL +G + + E NKRA ++ + Sbjct: 295 RMEWAVAFLESGSASLSSYCNTIPTPQGGTHEAGFRAALLKGFRAWGEQRSNKRAAAVNA 354 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD++ + LSVFIR+P+F GQTK KL S +A R +E ALRD F+ +L +P +A LL Sbjct: 355 DDVLGAIAAKLSVFIRDPQFQGQTKEKLTSSEASRLIETALRDRFEQWLAGHPAQADNLL 414 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 ++IER+EERLRR+ ++ RK+A R+LRLPGKL DC++ A TE+F+VEGDSAGGSAK Sbjct: 415 AFIIERAEERLRRKDLKDTPRKSATRRLRLPGKLTDCTRENAAETEIFLVEGDSAGGSAK 474 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QARNR QAVLPLRGKILNVASA +EK+R NQ++ DLV+ALGC ++ LRY +++ Sbjct: 475 QARNRETQAVLPLRGKILNVASASTEKLRANQELRDLVEALGCGIGERFDATRLRYGRIV 534 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHIASLL+TFFY+E+ DLI Q HL+L PPL+R+TQG K++YA D+ +++ Sbjct: 535 IMTDADVDGAHIASLLMTFFYRELPDLIRQGHLYLAQPPLYRLTQGGKTIYAMDDTDRER 594 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L+ K K+E+SRFKGLGEM LK+T MD RTLL+V T D + Sbjct: 595 KLKSNFK-PNAKVEVSRFKGLGEMPPGDLKQTTMDPRHRTLLKVV--TRPEDRALTSDRV 651 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + + RF+FIQE A ++D+ Sbjct: 652 EHLMGRRPELRFQFIQEHAQTVEDLD 677 >gi|87200102|ref|YP_497359.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM 12444] gi|87135783|gb|ABD26525.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 666 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 349/654 (53%), Positives = 450/654 (68%), Gaps = 10/654 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 SA++ YD S+I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG+AN Sbjct: 10 PATSAAEAYDGSAIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHAN 69 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV L+ LT+ DNGRGIPV+ HPK+P KS LE+ILTTLH+GGKF Y SGGLH Sbjct: 70 RIEVLLEEGNRLTISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSGKAYATSGGLH 129 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS V VAR +++Q+FSRG P + L K N+RGT++TF PD +I Sbjct: 130 GVGVSVVNALSSLTRVEVARNKELYAQEFSRGNPTTKLMKVGNAPNRRGTQVTFIPDTEI 189 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ A F ARL ++ +SKAYL V+ W C+ +A +P + F FPGGL +L Sbjct: 190 FGEDAKFKPARLFRLVRSKAYLFAGVEIRWKCEPSLASDD-VPAEAVFQFPGGLADHLAE 248 Query: 276 KLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTH 330 ++ R ++S F G+ + G G VEWAIAW + + YCNTI T +GGTH Sbjct: 249 QVSGRECVTSVPFAGRQDFPLGPDGEEMGRVEWAIAWPLWSDGSYSWYCNTIPTPDGGTH 308 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GLR ALT+GI+ +A+L K+A I +D++ + +LSVFIR+P+F QTK +L S Sbjct: 309 EQGLRAALTKGIRAFADLIGQKKAKDIAPEDMITGSEIMLSVFIRDPQFQSQTKDRLTSP 368 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLR 448 +A R VE A+RD FDH+L N LL V+ER +ERLRR+ +REV RKTA RKLR Sbjct: 369 EAARMVEAAVRDHFDHFLTDNMERGKALLGAVMERMDERLRRKAEREVKRKTATNARKLR 428 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DCS + TELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA ++KIR Sbjct: 429 LPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATADKIR 488 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ+I DL ALGC R + LRY++VIIMTDADVDGAHIA+LL+TFF+QEM +L+ Sbjct: 489 ANQEIADLALALGCGMRKDCNPDALRYDRVIIMTDADVDGAHIATLLMTFFFQEMPELVR 548 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + HL+L PPL+R+T G+ S YA D+ H+ ++ E K K+E+ RFKGLGEM QL Sbjct: 549 RGHLYLAQPPLYRLTSGSTSAYAKDDAHRAEL--EATKFKGKKVEVGRFKGLGEMNPQQL 606 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +ET M R+L+R+ + + +D +++LMG +RF FIQ RAS ID Sbjct: 607 RETTMAPATRSLIRITLPPEYEGRAAVKDLVDRLMGRDPAQRFMFIQNRASEID 660 >gi|259500636|ref|ZP_05743538.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM 13335] gi|259168020|gb|EEW52515.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM 13335] Length = 654 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AGY I Sbjct: 9 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 69 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 126 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 127 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + +++ K +EFY+ G+K+++ Sbjct: 187 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 239 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 240 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 295 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 296 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 356 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 415 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 416 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 475 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 476 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 535 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G + Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 536 GRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGK----GYSLQRFKGLGEMNA 591 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 592 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 642 >gi|261338542|ref|ZP_05966426.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093] gi|270276563|gb|EFA22417.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093] Length = 706 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 254/712 (35%), Positives = 372/712 (52%), Gaps = 32/712 (4%) Query: 1 MTDDSIDLFST----LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLE 56 M D + D Q E E S + + D+YDAS +R+LEGLE Sbjct: 1 MADLASDSLPESNELTDSTPQAPVEAPGAVSEETQSAQLDDTLSPDHYDASDLRVLEGLE 60 Query: 57 PVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGI 116 VR+RPGMYIG T + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGI Sbjct: 61 AVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGI 120 Query: 117 PVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176 PV+ P S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ Sbjct: 121 PVDEVP-GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQ 179 Query: 177 NTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234 +++Q + P +PL++ +R+ GT +TF PD +IF +D L Q Sbjct: 180 GYVWTQTYIDQHPTAPLKQGRPMRDDESTGTSVTFWPDAQIFETTI-YDFETLRSRFQQM 238 Query: 235 AYLSGRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 A+L+ +K + +E + + + + G+K Y++ ++ R Sbjct: 239 AFLNKGLKISLTDMREPDLAGDEVAGDEAQDKPEHQSVTYQYLNGIKDYVEFLVKTRKST 298 Query: 284 SSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 E E + + + E A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 299 PVEPDVIDFEAEDLSIGISAEIAMQWTTAYSESVHTFANTISTTEGGTHEEGFRTALTSL 358 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + KYA + ++ DD+ ++SV + P+F GQTKTKL + +A+ V Sbjct: 359 VNKYAREKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEARAFVIRV 418 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQ 458 + D + +P E +++ IE S RL +K RE R+ +I +P KL DC Sbjct: 419 MNDKLSDWADAHPNEMKSIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQS 478 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 N ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ Sbjct: 479 NDPAECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLIT 538 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PP Sbjct: 539 AVGGGYGEDFNLDKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPP 598 Query: 579 LFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMD 634 L+R+ + + + + ++L E + G+ I R+KGLGEM +L ET MD Sbjct: 599 LYRLKWTKGPHDFVYTDAERDRVLAEGRAAGRQLPKGEGIQRYKGLGEMSYQELWETTMD 658 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 R L +V I L ++ + LMG + + R FIQ A + Sbjct: 659 PEHRILKQVHIEDAL----QADETFSMLMGDEVEPRRLFIQRNAHNAKWIDA 706 >gi|169627114|ref|YP_001700763.1| DNA gyrase subunit B [Mycobacterium abscessus ATCC 19977] gi|169239081|emb|CAM60109.1| DNA gyrase (subunit B) GyrB (DNA topoisomerase) [Mycobacterium abscessus] Length = 675 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 247/686 (36%), Positives = 371/686 (54%), Gaps = 47/686 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A +SA Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKKSAKSEYSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A +EV++ +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y +SGG Sbjct: 62 ATTVEVTMLADGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS +L V + R + Q ++R P + + K GT + F DP Sbjct: 120 LHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK------------------- 254 +IF +D + + Q +A+L+ + + ++ + Sbjct: 178 EIFET-TTYDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQ 236 Query: 255 ------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + F++P GL +++ +S I + I + +G VE A+ W Sbjct: 237 AAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQW 293 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + KY + ++ ++ DD+ Sbjct: 294 NAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREG 353 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV + EP+F GQTKTKL + + + V+ + H+ NP +A ++ + Sbjct: 354 LAAVISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSS 413 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ Sbjct: 414 AQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDS 473 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M DA Sbjct: 474 MFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADA 533 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDG HI++LLLT ++ M L+E H+FL PPL+++ + +A+ + + ++E Sbjct: 534 DVDGQHISTLLLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEA 593 Query: 604 FKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 K GK KI I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 GLKAGK-KINKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELF 648 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + + Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLD 674 >gi|94994032|ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750] gi|94547540|gb|ABF37586.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750] Length = 650 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|157828185|ref|YP_001494427.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932887|ref|YP_001649676.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa] gi|157800666|gb|ABV75919.1| DNA topoisomerase IV subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907974|gb|ABY72270.1| topoisomerase IV subunit B [Rickettsia rickettsii str. Iowa] Length = 662 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 335/661 (50%), Positives = 450/661 (68%), Gaps = 14/661 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASTRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF + F+ ++ ++ +SKAYL V W C+ E+ + IP+K FP GLK Sbjct: 188 DPEIFSETLHFNPKKIYELARSKAYLYRGVTIEWVCEVEV--QSDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329 YL +K+ +L+ IF G E + R +EWAI W + SYCNT+ T +GGT Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y E+ NK+A ++ +D++ + +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETTSVVLSIFIAEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRL Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684 ET M KR+LL+V + +++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 605 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660 Query: 685 G 685 Sbjct: 661 D 661 >gi|292655722|ref|YP_003535619.1| DNA gyrase subunit B [Haloferax volcanii DS2] gi|302425107|sp|D4GZ01|GYRB_HALVD RecName: Full=DNA gyrase subunit B gi|291372625|gb|ADE04852.1| DNA gyrase subunit B [Haloferax volcanii DS2] Length = 639 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 250/655 (38%), Positives = 366/655 (55%), Gaps = 26/655 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ + IE Sbjct: 2 SQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G ++V DNGRGIPV+ H ++ ++ LE+I+T LHAGGKFDN +Y++SGGLHGVG Sbjct: 62 VALHEDGSVSVTDNGRGIPVDTHEQY-DRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKI 215 +SVVNALS EL V V R +++ +F G P ++ + GT I F PD I Sbjct: 121 VSVVNALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + A+L+ V+ S ++ E F F GG++ +++ Sbjct: 181 FET-TEFDFKTLENRLRELAFLNSGVEISLSDER-------TDESSTFLFEGGIREFVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334 E ++ + ++ E +G VE A+ +E I ++ N I T EGGTH +G Sbjct: 233 LNETKTALHDDVIYYDDESEGI---EVEIAMQATDELQGSIHAFANNINTREGGTHLTGF 289 Query: 335 RVALTRGIKKYAELTQNKRA---ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + YA ++ +D+ ++S+ +P+F GQTKTKL + + Sbjct: 290 KTALTRVVNDYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE+ + +NP AT ++ +E + R ++ E RK+A+ LP Sbjct: 350 VRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC +ELFIVEGDSAGGSAKQ R+R QA+LPL+GKILNV ++I N Sbjct: 410 GKLADCQSRDPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILEN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L+ A+G ++ E RY+++I+MTDADVDGAHI +LLLT Y+ M LIE Sbjct: 470 DEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+R+ + A DE + +I+EE ++ RFKGLGEM QL + Sbjct: 530 YVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPT--QVQRFKGLGEMNPDQLWD 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R L R+ + N LMG R +FI++ A+ + V Sbjct: 588 TTMNPENRVLKRITVED----AAAADRMFNILMGDAVGPRKQFIKDHANDAEWVD 638 >gi|19745824|ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS8232] gi|50913919|ref|YP_059891.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394] gi|73919730|sp|Q5XD05|GYRB_STRP6 RecName: Full=DNA gyrase subunit B gi|73919731|sp|Q8P1M4|GYRB_STRP8 RecName: Full=DNA gyrase subunit B gi|19747970|gb|AAL97459.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS8232] gi|50902993|gb|AAT86708.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394] Length = 650 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|312871805|ref|ZP_07731893.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a] gi|311092747|gb|EFQ51103.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a] Length = 647 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 250/655 (38%), Positives = 356/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AG+ I Sbjct: 2 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGFGKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 62 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + +++ K +EFY+ G+K+++ Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635 >gi|306827658|ref|ZP_07460937.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus pyogenes ATCC 10782] gi|304430139|gb|EFM33169.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus pyogenes ATCC 10782] Length = 650 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAVQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|313678887|ref|YP_004056627.1| DNA gyrase subunit B [Mycoplasma bovis PG45] gi|312950233|gb|ADR24828.1| DNA gyrase, B subunit [Mycoplasma bovis PG45] Length = 655 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 256/665 (38%), Positives = 363/665 (54%), Gaps = 25/665 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + ++ + +Y+ASSIR+LEGLE VR+RPGMYIG +K LHHL E++DN++DE + Sbjct: 5 KNTNQDKKTENSSYNASSIRVLEGLEAVRVRPGMYIGTITDKGLHHLVWEIVDNSVDECM 64 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYAN I++++ +G++ + DNGRGIPV HP+ ST+E +LT LHAGGKFD+ Y++ Sbjct: 65 AGYANYIKITICKDGYIEIEDNGRGIPVAKHPQ-TGLSTVETVLTVLHAGGKFDSDAYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRIT 208 SGGLHGVG SVVNALS +LHV V R+ + F G N+ GT+I Sbjct: 124 SGGLHGVGASVVNALSSDLHVWVKREGHTYYAHFQNGGQTVQPLTIINDIEPNETGTKIK 183 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD I F + + AYL+ + + EEFY+ GG Sbjct: 184 FYPDFSILEKHP-FSVEAITDHAKRIAYLTKGTRLVVVDE-------FNNTSEEFYYEGG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKT---EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 L Y+ E + L+ I + K + TVE A+ + T+Y N I+T Sbjct: 236 LIDYVNELNEGQKLVHDSIIYAEGLYDSDKSGSKITVEVAMQYISTFQPRITTYTNNIVT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE G AL+R I YA + S +D V I+S+ +P F GQ Sbjct: 296 IEGGTHEQGFFDALSRLINSYALKNNLIKNDSERLNKEDTSKGLVAIVSIKHPDPIFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KL + DA+ V L + Y +NPI+A +++ ++ + RL + + Sbjct: 356 TKGKLNNKDARTAVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQAN 415 Query: 443 AIRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 PGKLA+C+ A EL+IVEG+SAGGSAK R+R+ QA+LPLRGK++N Sbjct: 416 MGNNSIASLPGKLANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAE 475 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 E++ +N +I+ L+ ALG + LRY KVIIMTDADVDGAHI +LLLTFFY Sbjct: 476 KVSPERVLSNAEIISLITALGTGLNETFDINKLRYHKVIIMTDADVDGAHIRTLLLTFFY 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + LIE +++ PPL++I Q YA+++ K IL+E + KI I R+KGL Sbjct: 536 RYFRKLIEYGFIYIAQPPLYKIQQNKYIAYAYNDSQKDSILQEL--NQDSKITIQRYKGL 593 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET M+ R + +V+I+ LMG R +FI++ A F Sbjct: 594 GEMDPEQLWETTMNPENRKMYQVQIDD----AAKADWVFTTLMGDDVLPRREFIEKNAKF 649 Query: 681 IDDVG 685 + ++ Sbjct: 650 VQNID 654 >gi|323488988|ref|ZP_08094225.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2] gi|323397380|gb|EGA90189.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2] Length = 656 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 236/650 (36%), Positives = 354/650 (54%), Gaps = 36/650 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+ +I++LEGL+ VR RPGMYIG TD + LHHL E++DN++DE +AG+ + I V++ Sbjct: 9 YNEEAIQVLEGLDAVRKRPGMYIGSTDTRGLHHLVYEIVDNSVDEALAGHGDKISVTIHE 68 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + ++V D GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG SVVN Sbjct: 69 DNSISVRDYGRGMPTGMH--RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVN 126 Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 ALS L VT+ R + Q+F G P++ LE+ + GT I F PD IF + Sbjct: 127 ALSSFLEVTIYRDGKKYRQRFENGGKPVTTLEEIGSTKE-TGTMIHFLPDESIFSVS-KY 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L +K + A+ + F++ G++ ++ E + + Sbjct: 185 NYETLSERLRESAFLLKGLKIELFDQRTEAK-------DVFHYETGIEAFVSYLNEEKDV 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + ++ +E++ + + I S+ N + T +GGTHE+G + A+TR Sbjct: 238 LHPVA-YIEGQQD---EMEIEFSFQFNDGYSETILSFVNNVRTRDGGTHETGAKAAMTRV 293 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 YA + ++ D+ I+SV I E +F GQTK+KL + +A+ V+ Sbjct: 294 FNDYARKINLLKDKDKNLEGSDIREGLAAIVSVRIPEALLQFEGQTKSKLGTSEARSIVD 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLA 454 + + ++L +N + L+ I ++ RL RK RE R RK GKL Sbjct: 354 SVVSQKLMYFLEENADLSASLVRKAIRAAQARLAARKAREDARNGKKRKKSDALLSGKLT 413 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 A EL++VEGDSAGGSAKQ R+R+ QA+LPLRGK++N A E+I N++I Sbjct: 414 PAQSRNAKKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVVNTEKAKLEEIMKNEEIS 473 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G S + +D+ Y K+IIMTDAD DGAHI LLLTFF++ M LIE +F+ Sbjct: 474 TIIHAIGGGVSSDFSIDDIAYNKIIIMTDADTDGAHIQVLLLTFFFRYMKPLIEAGKVFI 533 Query: 575 ISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++++G K V YA E +++ K + R+KGLGEM A QL E Sbjct: 534 ALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGK----GYTLQRYKGLGEMNADQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV I + I LMG K + R ++I+ F Sbjct: 590 TTMNPETRTLIRVTIED----SARAERGITTLMGDKVEPRRRWIESNVDF 635 >gi|309803989|ref|ZP_07698071.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 11V1-d] gi|309805612|ref|ZP_07699654.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 09V1-c] gi|325912134|ref|ZP_08174532.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D] gi|308163908|gb|EFO66173.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 11V1-d] gi|308165050|gb|EFO67291.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 09V1-c] gi|325476084|gb|EGC79252.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D] Length = 647 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 356/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AGY I Sbjct: 2 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 62 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + +++ K +EFY+ G+K+++ Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635 >gi|259046724|ref|ZP_05737125.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC 49175] gi|259036620|gb|EEW37875.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC 49175] Length = 686 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 241/656 (36%), Positives = 358/656 (54%), Gaps = 35/656 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ Y+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GYA I Sbjct: 2 SKVTNQYNDDAIQVLEGLEAVRKRPGMYIGSTDHRGLHHLAYEIVDNAVDEALSGYATKI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV++ + L+V DNGRG+P H T+++I T LHAGGKF Y+ SGGLHGV Sbjct: 62 EVTIHKDQSLSVKDNGRGMPTGKH--ASGIPTIQVIFTVLHAGGKFGQGGYKTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALSD L V V R T++ Q F G P+ ++K++ R GT +TF P K F Sbjct: 120 GASVVNALSDWLTVEVLRDGTLYKQSFKNGGEPVGTVKKEKTSRRGSGTTVTFLPSDKTF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + L + + A+L + + ++ E E F++ G++ ++Q Sbjct: 180 STTN-WSYETLAERLRESAFLLKGLTIVLTDER-------TGESETFHYEEGIRDFIQYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + +S + T E+A + + I S+ N + T +GGTHE G++ Sbjct: 232 NEEKDTLSPVVDFDST----VDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMK 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 ALT+ +YA ++ ++ D+ I+S+ I E +F GQTK KL + Sbjct: 288 SALTKAFNEYARKVGLLKEKDKNLEGSDVREGLTAIISLRIPEEILQFEGQTKDKLGTPA 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448 A+ V+N + + +L +N A +L+ I+ E R RK RE +R K Sbjct: 348 ARGIVDNTISEQLGFFLTENGEIAQELIRKAIKAREAREASRKAREESRNGKKGKKKETL 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I Sbjct: 408 LSGKLTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDIL 467 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G S ++ ED Y+K++IMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 KNEEINTIIYTIGAGVGSDFKIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIE 527 Query: 569 QKHLFLISPPLFRITQG---TKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++L PPL++I++G + + YA E+ ++ + K + R+KGLGEM Sbjct: 528 AGKVYLALPPLYKISKGTGKKQVIEYAWTEKELEEKTKLVGK----GYLLQRYKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL +T M+ + RTL+RV I+ + ++ LMG K + R K+I+ F Sbjct: 584 ADQLWDTTMNPDTRTLIRVVIDD----KAQAERRVSTLMGNKVEPRRKWIERHVEF 635 >gi|317498962|ref|ZP_07957245.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893795|gb|EFV15994.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium 5_1_63FAA] Length = 637 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 251/651 (38%), Positives = 357/651 (54%), Gaps = 28/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ YDA+SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AGY + I V Sbjct: 2 ANKTYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGYCDEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 SL+ +G T+ DNGRGIPV + + K+ +E++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 SLNKDGTATITDNGRGIPVGIN-ERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS L VTV + ++ Q++ RG ++PLE R GT + F PDP+IF Sbjct: 121 SVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFDK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F AA + AYL+ ++ + ++E E +++ P G+ Y++ E Sbjct: 181 TY-FKAAMVRNRLHETAYLNPKLTIHYVNEREGEETT-----VDYHEPEGICAYVKKLNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ K+ E A + + I +CN I T EGGTH +G + Sbjct: 235 GKQMLHEPVYF----KRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTK 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T + +YA ++ + D+ I+SV EP F GQTKTKL + DA + Sbjct: 291 FTTIMNQYAREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V + Y +N K+L + ++ R K + + GKLA+ Sbjct: 351 VGEIAGEELVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDSNGKLAN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESRKAQDCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ A GC + + LRY K+IIMTDADVDGAHIA+LLLTFFY+ M +LI H Sbjct: 471 MINAFGCGFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530 Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +FL +PPL++ + + Y D+ L ++ KG + R+KGLGEM A QL E Sbjct: 531 VFLATPPLYKAMPKKGEETYLFDDA----ALTRYRAEHKGNFTLQRYKGLGEMDAQQLWE 586 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 T ++ RTL ++EI + T + LMG+ R +FI E A+ Sbjct: 587 TTLNPESRTLKQIEIEDARMASDVT----SMLMGSNVPPRRQFIYENANEA 633 >gi|56551307|ref|YP_162146.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis ZM4] gi|56542881|gb|AAV89035.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 660 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 339/653 (51%), Positives = 451/653 (69%), Gaps = 7/653 (1%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 ++DNY+A SI +LEGLEP+R RPGMYIGGTDE+A HHL +EV+DNAMDE +AG+ Sbjct: 7 KSTVTPSADNYNADSIEVLEGLEPIRRRPGMYIGGTDERAFHHLAAEVLDNAMDEAVAGH 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A IEV+LD LT+ DNGRGIP++ HPKFP+KS LE+ILTTLH+GGKF N Y SGG Sbjct: 67 ATRIEVTLDTGDRLTITDNGRGIPIDPHPKFPDKSALEVILTTLHSGGKFSNKAYATSGG 126 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS E V VAR ++ Q FSRG+PL LE+ N+RGT ++F PD Sbjct: 127 LHGVGISVVNALSSETTVEVARNRLLYRQSFSRGVPLGALEQVGNAPNRRGTSVSFIPDT 186 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFG F A+L +M +SKAYL V+ W C E+A + +PEK +FPGGL YL Sbjct: 187 EIFGKTLHFKPAKLYRMVRSKAYLFAGVEIIWRCAPELASED-VPEKAVIHFPGGLADYL 245 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + ++ R + E FTG+ G+VEWA+AW YCNTILT GGTHE Sbjct: 246 KEEVGKRDCATKEFFTGRQSFSDE-EGSVEWAVAWPLWSEGSSLYYCNTILTPAGGTHEQ 304 Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 GLR+AL RG++ + EL K+A I +D+++ A +LS+FIREP+F QTK +L + Sbjct: 305 GLRLALVRGLRAFGELVGLKKAKDIAPEDVIVGADMVLSLFIREPQFQSQTKDRLTNPQV 364 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 VE A+RD FDH+L + LL +++ER +ERLRRR +R++ RKT RKLRLP Sbjct: 365 AGLVEKAIRDHFDHFLTDDMDRGRALLGFIMERMDERLRRRAERDIKRKTVTAARKLRLP 424 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DCSQ+ A +ELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVA+A + KI N Sbjct: 425 GKLTDCSQDAADNSELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAAATNAKILAN 484 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q+I D+ QALGC R + + LRY+++IIM+DADVDGAHIA+LL+TFF++EM +++ Sbjct: 485 QEISDITQALGCGVRDRCDPQALRYDRIIIMSDADVDGAHIATLLMTFFFREMTEIVRNG 544 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H++L PPL+R+ G K++YA D+ H+ ++ + K K+E++RFKGLGEM QL+E Sbjct: 545 HIYLAQPPLYRLKAGAKTLYARDDNHRVELEKTVFK--GRKVEVARFKGLGEMNPQQLRE 602 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 T MD R+LLRV + KD ++ D +++LMG + + RF FIQ A+ D+ Sbjct: 603 TTMDPKTRSLLRVTLPKDYQDRQEISDLVDRLMGRQPEHRFAFIQANAAQFDE 655 >gi|156888559|gb|ABU96684.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 243/652 (37%), Positives = 370/652 (56%), Gaps = 34/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D ILS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L ET MD RTL+RV I+ L + ++ LMG KA R ++I++ Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVK 641 >gi|15674782|ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogenes M1 GAS] gi|71910366|ref|YP_281916.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005] gi|73919732|sp|Q9A0L0|GYRB_STRP1 RecName: Full=DNA gyrase subunit B gi|13621909|gb|AAK33677.1| putative DNA gyrase, subunit B [Streptococcus pyogenes M1 GAS] gi|71853148|gb|AAZ51171.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005] Length = 650 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 375/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F + GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFLYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa] Length = 700 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 247/676 (36%), Positives = 374/676 (55%), Gaps = 31/676 (4%) Query: 21 EKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSE 80 + + + S Y + I++L+GLEPVR RPGMYIG T + LHHL E Sbjct: 44 SPRAFMSTSVATESQQESAGSKAYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHHLVYE 103 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 ++DNA+DE AGYA+ I V L + +++ DNGRGIP + HP+ KS LE +LT LHAG Sbjct: 104 ILDNAVDEAQAGYASTINVVLHSDNSVSITDNGRGIPTDLHPE-TKKSALETVLTVLHAG 162 Query: 141 GKF--DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE- 197 GKF NS Y +SGGLHGVG+SVVNALS+EL VTV R + QK+SRG P++ L E Sbjct: 163 GKFGGSNSGYRVSGGLHGVGLSVVNALSEELEVTVWRDGKQYQQKYSRGNPVTTLTCHEL 222 Query: 198 --KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 + + +RGT I F PD ++F + FD + + A+L+ + Sbjct: 223 PVESKERRGTHIKFWPDKEVFTTEIQFDYHTIAGRVRELAFLNPK-----------DNDP 271 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI 315 + +E ++ GGL Y+ ++ + + K E G + + I Sbjct: 272 EKNQFDEHFYAGGLVEYVNWLNTDKKPLHDVLGFRK-EVDGIA-IDMALQWCSDAYSDTI 329 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 Y N+I T +GGTH G + +LTR + + ++ + +S+ + + I+SV Sbjct: 330 LGYANSIRTVDGGTHIDGAKASLTRTLNNLGKKSKVIKDKDMSLSGEHVREGLTCIISVK 389 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRR 432 + PEF GQTKT+L + + ++ VE ++++ YL +P +L + + Sbjct: 390 VPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEYLELHPDALDSILSKSLNALKAALAAK 449 Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 R + V +K+ ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPL Sbjct: 450 RARELVRQKSVLKSSSLPGKLADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPL 509 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHI 551 RGKILN+ + N++I +L+ LG + + ++D LRY K+II+TDADVDGAHI Sbjct: 510 RGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHI 569 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK 611 +LLLTFF++ L ++ +++ PPL+++ +G ++ Y D+ +KI F ++ Sbjct: 570 RTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAYYCFDDAELKKIQRSFPQN--AS 627 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 I RFKGLGEM+ +QL ET MD +R L ++ + + + LMGT+ D R Sbjct: 628 YNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVVED----AAEANIVFSSLMGTRVDFRK 683 Query: 672 KFIQERAS--FIDDVG 685 + IQ AS +D + Sbjct: 684 ELIQNAASMINVDHLD 699 >gi|94988237|ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429] gi|94541745|gb|ABF31794.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429] Length = 650 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|315653530|ref|ZP_07906450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC 55195] gi|315488892|gb|EFU78534.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC 55195] Length = 647 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 355/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AGY I Sbjct: 2 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGYGKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 62 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + ++ K +EFY+ G+K+++ Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERGPQRK------DEFYYDDGIKSFVSYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAERRVTTLMGDKVAARRKWIDENVKF 635 >gi|224543251|ref|ZP_03683790.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM 15897] gi|224523784|gb|EEF92889.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM 15897] Length = 645 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 243/649 (37%), Positives = 352/649 (54%), Gaps = 33/649 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S I+IL+GLE VR RPGMYIG TD + LHHL E++DN++DE IAGY I V+L Sbjct: 8 YDESDIQILKGLEAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEAIAGYGKKITVTLHK 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGISVV 162 + +TV D GRG+P + K K T E+ILT LHAGGKF ++ Y+ SGGLHGVG SVV Sbjct: 68 DNSVTVEDEGRGMPTGIN-KETGKPTTEVILTVLHAGGKFSEDGGYKTSGGLHGVGSSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L VTV R I +Q+F +G KK NK GT I F+PD IF F Sbjct: 127 NALSEFLEVTVHRDGVIHTQRFEKGATKIGKLKKVGKTNKTGTIIHFKPDASIFST-TTF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + + A+L + ++ + E + + GL+ ++ ++ Sbjct: 186 SFQTISERLREDAFLLKGMTIELIDER-------TDKDETYQYEKGLEEFIDWINNDKEA 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 +S I + VE A+ + + I S+ N + T +GGTHE G R LT+ Sbjct: 239 VSPIISF----DDTNNEIEVEIAMQFTQSYQENIISFVNLVRTGDGGTHEVGFRSGLTKV 294 Query: 342 IKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA + ++ D+ I+SV I E +F GQTK+KL S A+ +E Sbjct: 295 FNEYARKYALLKAKDKNLEGSDVREGLNAIISVKIPEKYLQFEGQTKSKLGSPIARNILE 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLPGKLAD 455 N + ++L +N A KL+E +I+ + R RK +E K L GKLA Sbjct: 355 NVTFERITYFLEENKDIAEKLIEKMIKAANARQAARKAKEQARKGKNNREAKFLSGKLAP 414 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I N++I Sbjct: 415 AQSKNKRKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKATQADILKNEEIST 474 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ + + + +D Y+K+IIMTDAD DGAHI LLLTFFY+ M DLI+ +++ Sbjct: 475 MINTINAGVGADFNADDSAYDKIIIMTDADTDGAHIQILLLTFFYRYMRDLIKAGKVYIA 534 Query: 576 SPPLFRITQ--GTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL+++++ G K +Y DE+ + ++ + ++ R+KGLGEM A QL ET Sbjct: 535 MPPLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGR----GYDVQRYKGLGEMNAEQLWET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL++V I+ + S++ LMG K R ++I+ F Sbjct: 591 TMNPETRTLIQVTIDD----AAIVERSVSVLMGDKVQPRREWIENNVQF 635 >gi|229586475|ref|YP_002844976.1| DNA topoisomerase IV subunit B [Rickettsia africae ESF-5] gi|228021525|gb|ACP53233.1| DNA topoisomerase IV, B subunit [Rickettsia africae ESF-5] Length = 662 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 336/661 (50%), Positives = 454/661 (68%), Gaps = 14/661 (2%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I +++ + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W+C+ E+ + IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEV--QSDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGT 329 YL +K+ +L+ IF G E + + +EWAI W + SYCNT+ T +GGT Sbjct: 246 YLSSKITLDNLVIPGIFAGNIES-TSDKIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFITEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRL Sbjct: 365 NGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDV 684 ET M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 605 ETTMHPEKRSLLKVTL----ADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISEL 660 Query: 685 G 685 Sbjct: 661 D 661 >gi|255012609|ref|ZP_05284735.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_7] Length = 620 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 250/632 (39%), Positives = 370/632 (58%), Gaps = 21/632 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T EK LHHL EV+DN++DE +AGY I+V ++ + +TV D+GRGIPV+ H K Sbjct: 1 MYIGDTSEKGLHHLVYEVVDNSIDEALAGYCTYIDVVINEDNSITVTDDGRGIPVDIHEK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 KS LE++LT LHAGGKFD TY++SGGLHGVG+S VNALS L V R + Q+ Sbjct: 61 -EGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTYLKAEVRRNGKVHMQE 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 FS G PL ++ + +K GT I+F+PD IF + L + A+L+ + Sbjct: 120 FSCGKPLHDVQVIDNT-DKTGTTISFKPDGSIFTVT-EYKYDILATRLRELAFLNAGITL 177 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + + + E + E F+ GLK +++ ++ + ++ TEK+G VE Sbjct: 178 RLTDKRVLKEDG-SFKSEVFHSDEGLKEFVRYIDRSKEKLIPDVIHIVTEKQGIP---VE 233 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISD 360 A+ + + SY N I T EGGTH +G R LTR +KKYAE ++ K + I D Sbjct: 234 VALTYNTSYNESVFSYVNDINTIEGGTHLAGFRRGLTRTLKKYAEDSKLLEKAKVEIQGD 293 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D ++S+ + EP+F GQTKTKL + + V+ A+ + +YL ++P EA +++ Sbjct: 294 DFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTGAVDMAIGEALGYYLEEHPKEAKIIVD 353 Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 VI ++ R RK RE+ ++ + + LPGKLADCS A ELF+VEGDSAGG+AK Sbjct: 354 KVILAAQARHAARKARELVQRKSPLTGGGLPGKLADCSSKDAAICELFLVEGDSAGGTAK 413 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY-----REEDLR 534 Q R+R+ QA+LPLRGKILNV A KI +++I ++ +A+G ++ E LR Sbjct: 414 QGRDRNFQAILPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLR 473 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y KVIIMTDADVDG+HIA+L+LTFF++ M LIE +++L +PPL+ +G Y E Sbjct: 474 YHKVIIMTDADVDGSHIATLILTFFFRRMRSLIENGYVYLATPPLYLCKKGKVEEYCWTE 533 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + +Q+ + ++ + I R+KGLGEM QL +T M+ RTL ++ I+ + + Sbjct: 534 QQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITID----NAAE 589 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LMG R +FI+E A++ ++ Sbjct: 590 ADQIFAMLMGEDVGPRREFIEENATYA-NIDA 620 >gi|168490903|ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04] gi|169833521|ref|YP_001694269.1| DNA gyrase subunit B [Streptococcus pneumoniae Hungary19A-6] gi|182683725|ref|YP_001835472.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14] gi|221231606|ref|YP_002510758.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669] gi|225854322|ref|YP_002735834.1| DNA gyrase subunit B [Streptococcus pneumoniae JJA] gi|225858616|ref|YP_002740126.1| DNA gyrase subunit B [Streptococcus pneumoniae 70585] gi|303255780|ref|ZP_07341821.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455] gi|303260274|ref|ZP_07346245.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293] gi|303261480|ref|ZP_07347428.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292] gi|303264148|ref|ZP_07350069.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397] gi|303266242|ref|ZP_07352133.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457] gi|303268680|ref|ZP_07354470.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458] gi|1490397|emb|CAA91553.1| DNA gyrase [Streptococcus pneumoniae] gi|73916244|gb|AAZ92990.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916262|gb|AAZ92999.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916276|gb|AAZ93006.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916288|gb|AAZ93012.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916298|gb|AAZ93017.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916300|gb|AAZ93018.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916302|gb|AAZ93019.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916304|gb|AAZ93020.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916306|gb|AAZ93021.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916308|gb|AAZ93022.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916310|gb|AAZ93023.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916312|gb|AAZ93024.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916314|gb|AAZ93025.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916316|gb|AAZ93026.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916320|gb|AAZ93028.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916326|gb|AAZ93031.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916330|gb|AAZ93033.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916332|gb|AAZ93034.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916334|gb|AAZ93035.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916338|gb|AAZ93037.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916340|gb|AAZ93038.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916342|gb|AAZ93039.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916350|gb|AAZ93043.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|168996023|gb|ACA36635.1| DNA gyrase, B subunit [Streptococcus pneumoniae Hungary19A-6] gi|182629059|gb|ACB90007.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14] gi|183574700|gb|EDT95228.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04] gi|220674066|emb|CAR68579.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669] gi|225721919|gb|ACO17773.1| DNA gyrase, B subunit [Streptococcus pneumoniae 70585] gi|225722735|gb|ACO18588.1| DNA gyrase, B subunit [Streptococcus pneumoniae JJA] gi|301801650|emb|CBW34348.1| DNA gyrase subunit B [Streptococcus pneumoniae INV200] gi|302597164|gb|EFL64269.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455] gi|302637614|gb|EFL68101.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292] gi|302638598|gb|EFL69062.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293] gi|302641740|gb|EFL72097.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458] gi|302644172|gb|EFL74428.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457] gi|302646553|gb|EFL76779.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397] gi|327390163|gb|EGE88506.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA04375] gi|332076087|gb|EGI86553.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41301] Length = 648 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|289642470|ref|ZP_06474615.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata] gi|289507729|gb|EFD28683.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata] Length = 644 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/656 (37%), Positives = 360/656 (54%), Gaps = 29/656 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGL+ VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY + I V+L Sbjct: 3 YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTIGVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIPV HP + +E++LTTLHAGGKFD +Y +SGGLHGVG+SVVN Sbjct: 63 DGGVRVSDNGRGIPVGEHP-TEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V + R+ + Q + P +PL K K GT +TF D IF + Sbjct: 122 ALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFET-TDYK 179 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + Q A+L+ + ++ P + + + GGL +++ ++ I Sbjct: 180 YETLSRRLQEMAFLNKGLTISLRDER-----PEEPLEVTYRYAGGLVDFVEHLNASKDPI 234 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + ++ G E A+ W + ++ NTI T EGGTHE G R ALT + Sbjct: 235 HKTVISLDSKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAV 291 Query: 343 KKYAELTQNKRAISIISDD---------LMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 YA+ + + + I+SV + +P+F GQTKTKL + +A+ Sbjct: 292 NAYAKDQNLLKPPKSNGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAK 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 R ++ +L N +EA ++ ++ R+ R R+ RK + LPGK Sbjct: 352 RFIQEMCYSALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV A +++ N + Sbjct: 412 LADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + L+QALGC + LRY K+++M DADVDG HI +LLLT ++ M L+E ++ Sbjct: 472 VQALIQALGCGIHDDFDASKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGYV 531 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLK 629 FL PPL++I G + YA+ + + ++E + G+ K I RFKGLGEM A++L Sbjct: 532 FLAQPPLYKIKWGREDWQYAYSDRERDGLIEHGIEAGRKLPKDAIQRFKGLGEMNATELW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD ++R LL+V ++ + + LMG D R FIQ A + + Sbjct: 592 DTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 643 >gi|168484465|ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00] gi|73916352|gb|AAZ93044.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|172042299|gb|EDT50345.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00] Length = 648 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|156888561|gb|ABU96685.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] gi|156889070|gb|ABU96686.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 244/652 (37%), Positives = 370/652 (56%), Gaps = 34/652 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGL+ VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V + Sbjct: 10 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGDDIRVVI 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 70 NKDGSVSVADSGRGMPTGQH--VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VNALS L V + R ++ Q+F G P++ L+K ++K GT +TF PD KIF Sbjct: 128 VNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFST- 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + + + A+L VK + + P EEF++ G++ +++ E+ Sbjct: 187 IDFKFNTISERLKESAFLLKNVKMSLTDLRGDD-----PIIEEFHYENGVQDFVEYLNED 241 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + ++ I+ ++ VE A+ + + + S+ N + T +GG+HE+GL+ A+ Sbjct: 242 KETLTPVIYMEGQDQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAI 297 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + YA T ++ ++ D ILS+ + E +F GQTK KL S A+ Sbjct: 298 TKAMNDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARP 357 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR---KTAIRKLRLPG 451 VE+ + + +L++N A+ L+ I+ + R RK R+ +R K K L G Sbjct: 358 IVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL A EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 418 KLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNE 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H Sbjct: 478 EINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 537 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+++++G K YA + + + EF K + R+KGLGEM A+Q Sbjct: 538 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFGKGAI----LQRYKGLGEMNANQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L ET MD RTL+RV I+ L + ++ LMG KA R K+I++ Sbjct: 594 LWETTMDPETRTLIRVTIDD----LARAERRVSVLMGDKAAPRRKWIEDNVK 641 >gi|307706371|ref|ZP_07643183.1| DNA gyrase, B subunit [Streptococcus mitis SK321] gi|307618289|gb|EFN97444.1| DNA gyrase, B subunit [Streptococcus mitis SK321] Length = 648 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE + GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-ERTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 D F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD + R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPDHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|73916260|gb|AAZ92998.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRXL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|315654385|ref|ZP_07907293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] gi|315491420|gb|EFU81037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] Length = 686 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 K + D+ + ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL EV+D Sbjct: 3 AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AGY + IEV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF Sbjct: 63 NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 S+Y +SGGLHGVGISVVNALS ++ TV R + +F G + ++ + + Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251 GT F PDP+IF FD L Q A+L+ ++ + ++ + Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQ 240 Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304 P+ + + GL Y+ + + E + + +E Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W I +Y NTI T EGGTHE G R ALT + K + ++ DD Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDD 360 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 ++SV IR P+F GQTKTKL + +A+ V+ + + +P E ++ Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + R RK R+ RKTA+ +PGKL DCS A E+F+VEGDSAGGSA Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVA 480 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+ ++QA+LPLRGKILNV A ++ +N++I L+ A G + LRY K+++ Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599 M DADVDG HI +LLLT ++ M LIE H+FL +PPL+R+ K + + ++ K K Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600 Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ G + I R+KGLGEM A +L ET MD + R L +V +++ Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FIQ A + + Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685 >gi|73916266|gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 373/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A ++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKLIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|157803444|ref|YP_001491993.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel] gi|157784707|gb|ABV73208.1| DNA topoisomerase IV subunit B [Rickettsia canadensis str. McKiel] Length = 662 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 336/660 (50%), Positives = 450/660 (68%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + +++Y A I +LEGLEPVR RPGMYIGG D A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKIKLVNNSYSAKDIEVLEGLEPVRKRPGMYIGGIDSSAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GYASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L V V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLDVKVYKQGKLYSQSYSKGEKLTGLICEEAPKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IFG+K F+ ++ ++ +SKAYL V W C+ E++ IP+K FP GLK Sbjct: 188 DPEIFGEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVS--SDIPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ +LI+ EIF+G E K + + I SYCNT+ T +GGTH Sbjct: 246 YLSSKITLDNLITQEIFSGNIESKPDGVILEWAICWQNNDNSAFIQSYCNTVPTPQGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSAILRGLKTYGEMIGNKKAANLTIEDILETASVVLSIFISEPSFQGQTKEKLVSQ 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + VEN ++D FDH+L N AT LLE VI +E R+ ++ + ++RK A +KLRLP Sbjct: 366 GVSKPVENIIKDHFDHFLSSNKALATNLLEHVIAIAEFRISKKNTKNISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSRLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y+EE+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 486 QAIQDLEIALACGSLKNYKEENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEKG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA DEE K ++ ++ K K +IE+ RFKGLGEM+ +QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAADEEEKARLTDKLSKTSKAQIEVGRFKGLGEMMPAQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I+D+ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINDLD 661 >gi|167766557|ref|ZP_02438610.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1] gi|167711680|gb|EDS22259.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1] gi|291558595|emb|CBL37395.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SSC/2] Length = 637 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 252/651 (38%), Positives = 357/651 (54%), Gaps = 28/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ YDA+SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AGY + I V Sbjct: 2 ANKTYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGYCDEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 SL+ +G T+ DNGRGIPV + + K+ +E++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 SLNKDGTATITDNGRGIPVGIN-ERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS L VTV + ++ Q++ RG ++PLE R GT + F PDP+IF Sbjct: 121 SVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFDK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F AA + AYL+ ++ + ++E E +++ P G+ Y++ E Sbjct: 181 TY-FKAAMVRNRLHETAYLNPKLTIHYVNEREGEETT-----VDYHEPEGICAYVKKLNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ K+ E A + + I +CN I T EGGTH +G + Sbjct: 235 GKQMLHEPVYF----KRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTK 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T + +YA ++ + D+ I+SV EP F GQTKTKL + DA + Sbjct: 291 FTTIMNQYAREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V + Y +N K+L + ++ R K + + GKLA+ Sbjct: 351 VGEIAGEELVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDSNGKLAN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESRKAQDCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ A GC + + LRY K+IIMTDADVDGAHIA+LLLTFFY+ M +LI H Sbjct: 471 MINAFGCGFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530 Query: 572 LFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +FL +PPL++ Q + Y D+ L ++ KG + R+KGLGEM A QL E Sbjct: 531 VFLATPPLYKAMPQKGEETYLFDDA----ALTRYRAEHKGNFTLQRYKGLGEMDAQQLWE 586 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 T ++ RTL ++EI + D + LMG+ R +FI E A+ Sbjct: 587 TTLNPESRTLKQIEIED----ARMASDITSMLMGSDVPPRRQFIYENANEA 633 >gi|227487658|ref|ZP_03917974.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227092352|gb|EEI27664.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867] Length = 691 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 252/689 (36%), Positives = 366/689 (53%), Gaps = 58/689 (8%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDA+SI +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+A+ ++V L Sbjct: 14 DYDATSITVLEGLEAVRKRPGMYIGSTGRRGLHHLVWEVVDNSIDEALAGFADKVDVVLH 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V DNGRGIPVE H + T+E+++T LHAGGKF+N +Y++SGGLHGVGISVV Sbjct: 74 EDGSVEVTDNGRGIPVEMH--QTGRPTVEVVMTQLHAGGKFNNDSYKVSGGLHGVGISVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + + R + Q+F+ +P + GTRI F PD +IF F Sbjct: 132 NALSTRVEADIKRDGYHWYQRFNNQVPDDLEK--GGKARGTGTRIRFWPDAEIFETV-EF 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------------------------ 252 + + Q A+L+ V + ++ Sbjct: 189 NYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEADSLSLDEVDEKL 248 Query: 253 -EKYGIPEKEE-------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304 EK E E F++P GL Y++ + ++ + T + +E Sbjct: 249 AEKPQAEEPETPSERSVVFHYPDGLIDYVKFLNKKKTALHP---TIVGFQDSEDDLALEV 305 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W + ++ NTI T EGGTHE G R ALT + KYA + + + DD Sbjct: 306 ALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLLKDKDPKLTGDD 365 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 ++SV + +P+F GQTKTKL + + + V+ + H+ NP EA +++ Sbjct: 366 CREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANPAEAKIIVQK 425 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 ++ RL RK RE V RK+ LPGKLADC +EL+IVEGDSAGGSAK Sbjct: 426 ASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKA 485 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+ QA+LPLRGKILNV A ++ N +I ++ ALG ++ LRY K+++ Sbjct: 486 GRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGVHDEFDISKLRYHKIVL 545 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQK 599 M DADVDG HIA+LLLT ++ M LIE+ H++L +PPL+++ +A+ ++ + Sbjct: 546 MADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPGFAYSDQERDD 605 Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +L E + G+ I R+KGLGEM AS+L ET +D + RTL RV DL + Sbjct: 606 LLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRV----DLEDAERAD 661 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 662 ELFSILMGDDVVARRTFITRNAKDVRFLD 690 >gi|312193902|ref|YP_004013963.1| DNA gyrase, B subunit [Frankia sp. EuI1c] gi|311225238|gb|ADP78093.1| DNA gyrase, B subunit [Frankia sp. EuI1c] Length = 646 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 362/657 (55%), Gaps = 29/657 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGL+ VR RPGMYIG T E+ LHHL SEV+DN++DE +AG+ + I V+L Sbjct: 3 YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVSEVVDNSVDEALAGFCDTITVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + VVDNGRGIPV HP + T+E++LT LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 63 DGGVRVVDNGRGIPVGMHP-TEKRPTVEVVLTILHAGGKFDSDSYAVSGGLHGVGISVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ V + + Q+++ P ++ K + GT +TF D +IF + Sbjct: 122 ALSTKVEVEIKVDGFHWFQRYTAQRPGPLEKRAPLKRGERTGTTVTFWADAEIFET-TEY 180 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + Q A+L+ + ++ P + F + GL ++ + Sbjct: 181 KYETLYRRLQEMAFLNKGISISLRDER-----AEEPVEVTFKYENGLADFVAHLNATKEP 235 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I I + + KG E A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 236 IHKTIVALEAKGKGI---EAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSA 292 Query: 342 IKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + YA+ + + DD+ I+SV + EP+F GQTKTKL + +A Sbjct: 293 VNVYAKEQNLLKPVKAGAKSPDERLSGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEA 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 ++ V+ + N +EA ++ ++ R+ R R+ RK + LPG Sbjct: 353 KKFVQEMCYSALRDWFDANRVEARSIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPG 412 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL+DC EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV A +++ N Sbjct: 413 KLSDCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNT 472 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+QALG ++ LRY K+++M DADVDG HI +LLLT ++ M L+E H Sbjct: 473 EVQALIQALGTGIHDEFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGH 532 Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQL 628 +FL PPL++I G + YA+ + + +LE + G+ K I RFKGLGEM A++L Sbjct: 533 VFLAQPPLYKIKWGREDWEYAYSDRERDGLLERGVEAGRKLPKDAIQRFKGLGEMNATEL 592 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T MD ++R LL+V ++ + + LMG D R FIQ A + + Sbjct: 593 WDTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 645 >gi|297162918|gb|ADI12630.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1] Length = 677 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 243/679 (35%), Positives = 368/679 (54%), Gaps = 23/679 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL E++ Sbjct: 5 DTRTATDTPGSQQPGHAGAASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG A+ I+V++ +G + VVDNGRGIPV HP + +E++LT LHAGGK Sbjct: 65 DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y +SGGLHGVG+SVVNALS L + ++Q + G P +PL + E Sbjct: 124 FGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLARHEATPR- 182 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253 GT +TF D IF + L + Q A+L+ + + ++ + A+ Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRFQEMAFLNRGLTLTLTDERPSAHATAAADEAD 241 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313 + + + GG+ ++ + + +VE A+ W + Sbjct: 242 SDPAAKTVSYRYDGGITDFVAYLNARKGEPVHPSVITIAAEDTERLLSVEVALQWNGQYT 301 Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370 + + SY N I T EGGTHE G R ALT + +YA + ++ ++ +D+ I+ Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKKLLREKDANLSGEDIREGLTAII 361 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV + EP+F GQTKTKL + +A+ V+ + + + +NP EA ++ I+ + R+ Sbjct: 362 SVKLGEPQFEGQTKTKLGNTEARTFVQKVVHEHLTGWFDRNPNEAADVVRKAIQAATARV 421 Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R++ R+ + LPGKL+DC N +E+FIVEGDSAGGSAK RN QA+ Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAI 481 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A +KI +NQ+I ++ A G + LRY K+I+M DADVDG Sbjct: 482 LPIRGKILNVEKARIDKILHNQEIQAIISAFGTGVHEDFDIARLRYHKIILMADADVDGQ 541 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILEEFKKHG 608 HI +LLLTF ++ M LIE+ H++L PPL++I YA+ + + +LE ++ G Sbjct: 542 HINTLLLTFLFRFMRPLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERNMLLERGRQDG 601 Query: 609 KGK--IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 + I RFKGLGEM A +L+ T MD + R L +V ++ D + LMG Sbjct: 602 RRSKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAVADDLFSVLMGED 657 Query: 667 ADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 658 VEARRHFIQRNAKDVRFLD 676 >gi|73916248|gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|315657693|ref|ZP_07910575.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492165|gb|EFU81774.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 686 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 249/689 (36%), Positives = 363/689 (52%), Gaps = 33/689 (4%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 K + D+ + ++YDAS IR+LEGLE VR+RPGMYIG T E+ LHHL EV+D Sbjct: 3 AKKPKKGDTNVSDFEKPEEHYDASDIRVLEGLEAVRVRPGMYIGSTGERGLHHLVYEVVD 62 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AGY + IEV+L +G + V DNGRGIPV HP ++ T+E+++T LHAGGKF Sbjct: 63 NSVDESLAGYCDHIEVTLQADGGVRVADNGRGIPVAEHP-SEHRPTVEVVMTILHAGGKF 121 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 S+Y +SGGLHGVGISVVNALS ++ TV R + +F G + ++ + + Sbjct: 122 GGSSYAVSGGLHGVGISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRRGEPTEET 181 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK------------EI 251 GT F PDP+IF FD L Q A+L+ ++ + ++ + Sbjct: 182 GTVQVFYPDPEIFET-VEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQ 240 Query: 252 AEKYGIPEK----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---KKGTHRGTVEW 304 P+ + + GL Y+ + + E + + +E Sbjct: 241 DGDADSPKVGRRSVSYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEI 300 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W I +Y NTI T EGGTHE G R ALT + K + ++ DD Sbjct: 301 ALQWTSAYSESIYTYANTINTTEGGTHEEGFRAALTSLMNKIGREKGFIKDKDENLSGDD 360 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 ++SV IR P+F GQTKTKL + +A+ V+ + + +P E ++ Sbjct: 361 CREGLTAVISVKIRNPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAK 420 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 + R RK R+ RKTA+ +PGKL DCS A E+F+VEGDSAGGSA Sbjct: 421 AQSAQQARNAARKARDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVA 480 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+ ++QA+LPLRGKILNV A ++ +N++I L+ A G + LRY K+++ Sbjct: 481 GRDPAHQAILPLRGKILNVEKARLDRALDNKEIQSLITAFGTGIGEDFDLSKLRYYKIVL 540 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQK 599 M DADVDG HI +LLLT ++ M LIE H+FL +PPL+R+ K + + ++ K K Sbjct: 541 MADADVDGQHITTLLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDK 600 Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ G + I R+KGLGEM A +L ET MD + R L +V +++ Sbjct: 601 MVSLGLDSGARMPKEGGIQRYKGLGEMSAQELWETTMDPSARLLKQVTMDE----AASAD 656 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FIQ A + + Sbjct: 657 EVFSLLMGEDVSSRRAFIQRNAQDVRFLD 685 >gi|258650278|ref|YP_003199434.1| DNA gyrasesubunit B [Nakamurella multipartita DSM 44233] gi|258553503|gb|ACV76445.1| DNA gyrase, B subunit [Nakamurella multipartita DSM 44233] Length = 670 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 250/679 (36%), Positives = 369/679 (54%), Gaps = 42/679 (6%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA+ + Sbjct: 2 TTKKNEYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGYADRV 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV L +G +TV+DNGRGIPVE HPK K T+E++LT LHAGGKFD+ +Y +SGGLHGV Sbjct: 62 EVILRADGGVTVIDNGRGIPVEMHPK-EKKPTVEVVLTVLHAGGKFDSDSYAVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L V + R + Q + P ++ G+ +TF PD +IF Sbjct: 121 GVSVVNALSTRLDVEIHRDGHAYRQSYRYAKPGPLETI--GPSSRTGSSVTFWPDGEIFE 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-----------------------K 254 F + + Q A+L+ + ++ K Sbjct: 179 T-VEFKLETISRRLQEMAFLNKGLTITLRDERRTDVELEEIAESGANAVPVEAEPTTPAK 237 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313 P + F++PGGL Y++ + I I +++ + VE A+ W Sbjct: 238 AWKPLERTFHYPGGLVDYIKHLNHTKDPIHPSIVGFESKGET---MEVEVAMQWNSSYNE 294 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILS 371 + S+ NTI T EGGTHE G R +LT + KY + ++ + +D+ I+S Sbjct: 295 SVHSFANTINTHEGGTHEEGFRSSLTSVVNKYATDKKLLKEKDDKLSGEDVREGLAAIIS 354 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 + +REP+F GQTK KL + +A+ V+ A + + +NP EA ++ + ++ R Sbjct: 355 IRLREPQFEGQTKGKLGNTEAKSFVQKACNEWIADWFERNPSEAKTIISKAVSSAQARAA 414 Query: 432 RRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK R+ V RK A+ LPGKLADC +EL+IVEGDSAGGSAK R+ QA+L Sbjct: 415 ARKARDLVRRKGALEIGGLPGKLADCRSTDPSKSELYIVEGDSAGGSAKSGRDSMFQAIL 474 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKI+NV A +++ N ++ L+ ALG + LRY K+++M DADVDG H Sbjct: 475 PIRGKIINVEKARIDRVLRNTEVQSLITALGTGIHDDFDLAKLRYHKIVLMADADVDGQH 534 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK 609 I +LLLT ++ M L+E H++L PPL++I + +A+ + + ++ E ++ G+ Sbjct: 535 IRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWSKGAHEFAYSDRERDGLIAEGERAGR 594 Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 I+ + R+KGLGEM A +L ET MD R LL+V + + + LMG Sbjct: 595 RMIKDEGVQRYKGLGEMNAKELWETTMDPANRLLLQVTLED----AATADELFSVLMGED 650 Query: 667 ADERFKFIQERASFIDDVG 685 + R FI A + + Sbjct: 651 VEARRAFITRNAKDVRFLD 669 >gi|145294048|ref|YP_001136869.1| DNA gyrase subunit B [Corynebacterium glutamicum R] gi|140843968|dbj|BAF52967.1| hypothetical protein [Corynebacterium glutamicum R] Length = 684 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 256/694 (36%), Positives = 373/694 (53%), Gaps = 60/694 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDASSI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+A +E Sbjct: 3 NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + VVD+GRGIPV+ HP T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + + Q F + +P +E GT I F PD +IF Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262 FD + + Q A+L+ + + ++ E+ + E Sbjct: 179 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 237 Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 F++P GL+ Y+Q +++ I I + + + Sbjct: 238 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVQYLNRSKTNIHPSIVSFEAKGDDH--- 294 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357 VE A+ W + ++ NTI T EGGTHE G R ALT + +YA + ++ ++ Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD ++SV + +P+F GQTKTKL + + + V+ + H+L NP EA Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414 Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 ++ + ++ RL RK R+ V RK+A LPGKLADC +EL+IVEGDSAGG Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ LRY Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 534 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595 K+++M DADVDG HIA+LLLT ++ M DL+ + H++L PPL+++ + +A+ +E Sbjct: 535 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 594 Query: 596 HKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + + L E G+ KI I R+KGLGEM AS+L ET MD R L RV+I Sbjct: 595 ERDEQLNEGLAAGR-KINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD---- 649 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + + LMG R FI A + + Sbjct: 650 AQRADELFSILMGDDVVARRSFITRNAKDVRFLD 683 >gi|148992476|ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68] gi|149021676|ref|ZP_01835707.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72] gi|168489810|ref|ZP_02714009.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195] gi|237649436|ref|ZP_04523688.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974] gi|307127642|ref|YP_003879673.1| DNA gyrase subunit B [Streptococcus pneumoniae 670-6B] gi|73916238|gb|AAZ92987.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916272|gb|AAZ93004.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916274|gb|AAZ93005.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916292|gb|AAZ93014.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916324|gb|AAZ93030.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147928793|gb|EDK79806.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68] gi|147930137|gb|EDK81123.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72] gi|183571773|gb|EDT92301.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195] gi|301793963|emb|CBW36359.1| DNA gyrase subunit B [Streptococcus pneumoniae INV104] gi|306484704|gb|ADM91573.1| DNA gyrase, B subunit [Streptococcus pneumoniae 670-6B] gi|332073065|gb|EGI83544.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17570] Length = 648 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|21322770|dbj|BAB97399.1| DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum ATCC 13032] Length = 711 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 253/693 (36%), Positives = 371/693 (53%), Gaps = 58/693 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDASSI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+A +E Sbjct: 30 NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 89 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + VVD+GRGIPV+ HP T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 90 VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 147 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + + Q F + +P +E GT I F PD +IF Sbjct: 148 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 205 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262 FD + + Q A+L+ + + ++ E+ + E Sbjct: 206 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 264 Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 F++P GL+ Y+ +++ I I + + + Sbjct: 265 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH--- 321 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357 VE A+ W + ++ NTI T EGGTHE G R ALT + +YA + ++ ++ Sbjct: 322 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 381 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD ++SV + +P+F GQTKTKL + + + V+ + H+L NP EA Sbjct: 382 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 441 Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 ++ + ++ RL RK R+ V RK+A LPGKLADC +EL+IVEGDSAGG Sbjct: 442 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 501 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ LRY Sbjct: 502 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 561 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595 K+++M DADVDG HIA+LLLT ++ M DL+ + H++L PPL+++ + +A+ +E Sbjct: 562 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 621 Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + + L E G+ + I R+KGLGEM AS+L ET MD R L RV+I Sbjct: 622 ERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD----A 677 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + + LMG R FI A + + Sbjct: 678 QRADELFSILMGDDVVARRSFITRNAKDVRFLD 710 >gi|73916264|gb|AAZ93000.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDP+IF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTPDPEIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ ENR Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENR 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|322388186|ref|ZP_08061790.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus infantis ATCC 700779] gi|321140858|gb|EFX36359.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus infantis ATCC 700779] Length = 648 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 376/653 (57%), Gaps = 24/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ Sbjct: 6 KNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV ++ + +TV+D+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 66 IEVFIEPDDSITVIDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q++ RG ++ LE +K GT + F PDP+IF Sbjct: 125 VGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTGTIVHFTPDPEIF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ Sbjct: 184 TETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYI 238 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 EN+ +I E + TVE A+ + E S+ N I T EGGTHE G R Sbjct: 239 NENKDVIFDTPIYTDGEMEDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFR 295 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 296 TALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + D F +L++NP A +++E ++ +R + +K+ + LPGK Sbjct: 356 KITNRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 416 LADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G +++ RY+K++IMTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 476 IRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 ++ PP++ + G++ Y ++ Q+ L + G+ K I R+KGLGEM Q Sbjct: 536 YIAQPPIYGVKVGSEIKEYIQPGADQEIRLQEALARYS-EGRSKPTIQRYKGLGEMDDHQ 594 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET M+ R + RV ++ + + LMG + + R +FI+E A + Sbjct: 595 LWETTMNPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|255975795|ref|ZP_05426381.1| gram positive topoisomerase IV [Enterococcus faecalis T2] gi|255968667|gb|EET99289.1| gram positive topoisomerase IV [Enterococcus faecalis T2] Length = 666 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 235/639 (36%), Positives = 345/639 (53%), Gaps = 33/639 (5%) Query: 55 LEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114 +E VR RPGMYIG TD + LHHL E++DNA+DE ++GY N I V++ + + V D+GR Sbjct: 1 MEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGR 60 Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174 G+P H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + Sbjct: 61 GMPTGMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118 Query: 175 RQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233 R + ++F G P+ L+K K + + GT +TF PD IF F L + + Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRE 177 Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 A+L VK + + K E F++ G+K ++ E + ++ + Sbjct: 178 SAFLLKGVKITLTDGRGEELKE-----EVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGA 231 Query: 294 KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350 K+G VE A + + E S+ N + T +GGTHE G++ ++T+ +YA Sbjct: 232 KEGI---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLL 288 Query: 351 NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 ++ ++ D +LS+ + E +F GQTK KL + A+ V+N + + YL Sbjct: 289 KEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYL 348 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTE 465 +N + L+ I+ E R RK RE +R RK L GKL E Sbjct: 349 QENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNE 408 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 L++VEGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G Sbjct: 409 LYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG 468 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 ++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++++G Sbjct: 469 PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKG 528 Query: 586 --TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 KSV YA + +++++ K + R+KGLGEM A QL ET MD RTL+ Sbjct: 529 TGKKSVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLI 584 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 RV I+ + + LMG K + R K+I++ F Sbjct: 585 RVRIDD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 619 >gi|225861290|ref|YP_002742799.1| DNA gyrase subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298255372|ref|ZP_06978958.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503188|ref|YP_003725128.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|73916290|gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916294|gb|AAZ93015.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916296|gb|AAZ93016.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|225727003|gb|ACO22854.1| DNA gyrase, B subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238783|gb|ADI69914.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 648 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R +LT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTSLT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|227541366|ref|ZP_03971415.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866] gi|227182917|gb|EEI63889.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866] Length = 691 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 252/689 (36%), Positives = 367/689 (53%), Gaps = 58/689 (8%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDA+SI +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+A+ ++V L Sbjct: 14 DYDATSITVLEGLEAVRKRPGMYIGSTGRRGLHHLVWEVVDNSIDEALAGFADKVDVVLH 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V DNGRGIPVE H + T+E+++T LHAGGKF+N +Y++SGGLHGVGISVV Sbjct: 74 EDGSVEVTDNGRGIPVEMH--QTGRPTVEVVMTQLHAGGKFNNDSYKVSGGLHGVGISVV 131 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + + R + Q+F+ +P + GTRI F PD +IF F Sbjct: 132 NALSTRVEADIKRDGYHWYQRFNNQVPDDLEK--GGKARGTGTRIRFWPDAEIFETV-EF 188 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIA------------------------------ 252 + + Q A+L+ V + ++ Sbjct: 189 NYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEADSLSLDEVDEKL 248 Query: 253 -EKYGIPEKEE-------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEW 304 EK E E F++P GL Y++ + ++ + T + +E Sbjct: 249 AEKPQAEEPEIPSERSVVFHYPDGLIDYVKFLNKKKTALHP---TIVGFQDSEDDLALEV 305 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W + ++ NTI T EGGTHE G R ALT + KYA + ++ + DD Sbjct: 306 ALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLMKEKDPKLTGDD 365 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 ++SV + +P+F GQTKTKL + + + V+ + H+ NP EA +++ Sbjct: 366 CREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANPAEAKIIVQK 425 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 ++ RL RK RE V RK+ LPGKLADC +EL+IVEGDSAGGSAK Sbjct: 426 ASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKA 485 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 R+ QA+LPLRGKILNV A ++ N +I ++ ALG ++ LRY K+++ Sbjct: 486 GRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGVHDEFDISKLRYHKIVL 545 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQK 599 M DADVDG HIA+LLLT ++ M LIE+ H++L +PPL+++ +A+ ++ + Sbjct: 546 MADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPGFAYSDQERDD 605 Query: 600 ILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +L E + G+ I R+KGLGEM AS+L ET +D + RTL RV DL + Sbjct: 606 LLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRV----DLEDAERAD 661 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 662 ELFSILMGDDVVARRTFITRNAKDVRFLD 690 >gi|19551255|ref|NP_599257.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032] gi|62388898|ref|YP_224300.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032] gi|41324231|emb|CAF18571.1| DNA GYRASE SUBUNIT B [Corynebacterium glutamicum ATCC 13032] Length = 684 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 253/693 (36%), Positives = 371/693 (53%), Gaps = 58/693 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDASSI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AG+A +E Sbjct: 3 NTEHNYDASSITILEGLEAVRKRPGMYIGSTGPRGLHHLIWEVVDNSVDEAMAGHATKVE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + VVD+GRGIPV+ HP T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLEDGGVQVVDDGRGIPVDMHP--SGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + + Q F + +P +E GT I F PD +IF Sbjct: 121 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262 FD + + Q A+L+ + + ++ E+ + E Sbjct: 179 T-EFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNE 237 Query: 263 ----------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 F++P GL+ Y+ +++ I I + + + Sbjct: 238 TELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH--- 294 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357 VE A+ W + ++ NTI T EGGTHE G R ALT + +YA + ++ ++ Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD ++SV + +P+F GQTKTKL + + + V+ + H+L NP EA Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414 Query: 418 LLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 ++ + ++ RL RK R+ V RK+A LPGKLADC +EL+IVEGDSAGG Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ LRY Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGIHDEFDINKLRYH 534 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEE 595 K+++M DADVDG HIA+LLLT ++ M DL+ + H++L PPL+++ + +A+ +E Sbjct: 535 KIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDE 594 Query: 596 HKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + + L E G+ + I R+KGLGEM AS+L ET MD R L RV+I Sbjct: 595 ERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITD----A 650 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + + LMG R FI A + + Sbjct: 651 QRADELFSILMGDDVVARRSFITRNAKDVRFLD 683 >gi|309809880|ref|ZP_07703730.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 2503V10-D] gi|308169832|gb|EFO71875.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 2503V10-D] Length = 647 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 33/655 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++ YD SSI+IL GLE VR RPGMYIG TD + L+HL E++DN++DE +AG+ I Sbjct: 2 TNLNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQGLNHLVYEILDNSVDEAMAGFGKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D GRG+P H T+E+ILT LHAGGKF Y+ SGGLHGV Sbjct: 62 NVTIHPDNSVSVQDFGRGMPTGMH--ASGLPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALS+ L V V R F ++F G P+ L+K +K GT ITF+PD KIF Sbjct: 120 GSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + + + A+L V+ + +++ K +EFY+ G+K+++ Sbjct: 180 STTI-YKYETIQERLREAAFLLKGVRFTLTDERDPQRK------DEFYYDDGIKSFVSYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 E++ I F + E VE++ + + E S+ N + T +GG+HE+G R Sbjct: 233 NEDKDTIGDI-FYFEGEIDNI---KVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGAR 288 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 TR YA+ + D +LSV I E EF GQTK KL + Sbjct: 289 SGFTRAFNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQ 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--L 449 A+ V+N + + +YL++N A KL++ E R +K R+ +R RK + L Sbjct: 349 ARSVVDNIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL I ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I Sbjct: 409 SGKLTPAQSRIPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFK 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + D Y K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 NEEINTMIHTIGAGVGPDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEA 528 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+++ +G Y+ +E QK ++EF K + RFKGLGEM A Sbjct: 529 GRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGK----GYSLQRFKGLGEMNA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ N RTL+RV+I+ + + LMG K R K+I E F Sbjct: 585 DQLWETTMNPNTRTLIRVKIDD----AALAEHRVTTLMGDKVAARRKWIDENVKF 635 >gi|157825436|ref|YP_001493156.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford] gi|157799394|gb|ABV74648.1| DNA topoisomerase IV subunit B [Rickettsia akari str. Hartford] Length = 662 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 334/660 (50%), Positives = 448/660 (67%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEALA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSQGKKLTDLICEESYKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWECEVEVL--SDIPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ +LI EIF+G E + + + I SYCNT+ T +GGTH Sbjct: 246 YLSSKITLDNLIIPEIFSGNVESTPDGIKLEWAICWQNNDNSAFIQSYCNTVTTPQGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETACVVLSIFIAEPSFQGQTKEKLVSN 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + VEN ++D FDH+L + AT LLE VI +E R+ ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPVENIIKDHFDHFLSSDKALATNLLEHVIAIAEFRISKKNEKNISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA DEE K K++ + K K KIE+ RFKGLGEM+ +QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLMGKLSKASKAKIEVGRFKGLGEMMPAQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL V + ++ ++ LMG K ++RF+FI E+A I+++ Sbjct: 606 TTMHPEKRSLLNVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661 >gi|331701470|ref|YP_004398429.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri NRRL B-30929] gi|329128813|gb|AEB73366.1| DNA topoisomerase IV, B subunit [Lactobacillus buchneri NRRL B-30929] Length = 651 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 251/655 (38%), Positives = 363/655 (55%), Gaps = 33/655 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 YD SSI+ILEGL+ VR RPGMYIG TD + LHHL E++DNA+DEV+AGY + I+ Sbjct: 3 KQKQKYDDSSIQILEGLDAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEVLAGYGDEID 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 VS+ + +TVVD+GRG+P H K T E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 63 VSIHKDNSITVVDHGRGMPTGMH--ASGKPTPEVILTMLHAGGKFGQGGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V + R + + F G P+ L+K K R GT +TF+PDP IF Sbjct: 121 ASVVNALSTWLKVVIVRDGYRYEEDFKNGGHPVGTLKKLGKTRAHSGTTVTFKPDPTIFT 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ + L + + A+L K + ++ E +++ F++ G+K ++Q Sbjct: 181 STV-YNFSVLSERLRESAFLLKGTKITLTDERTDQE-----QEDVFHYEEGIKEFVQYLN 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E++ ++ +K G VE A + + + S+ N + T +GGTHE+GLR Sbjct: 235 EDK-HTLGDVMYFDGKKDGV---EVEVAAQYNDGYSETMLSFVNNVRTKDGGTHEAGLRN 290 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 A T+ YA ++ ++ D+ +LS+ I E +F GQTK KL + +A Sbjct: 291 AWTKAFNDYARKVGMLKEKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449 + V+N + + +YL++N A L+ + + R RK R+ R K + L Sbjct: 351 RSIVDNVVSEKLGYYLMENGEFAQTLVHKALRARQARQAARKARDETRTGKRHKKQERLL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A +I Sbjct: 411 SGKLTPAQSKDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMK 470 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + +D Y+K+IIMTDAD DGAHI LLLTFFY+ M +I+ Sbjct: 471 NEEINTMIYTIGAGVGADFNIDDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDN 530 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +F+ PPL+++ +G K YA E K+ ++F K + RFKGLGEM A Sbjct: 531 GRVFIALPPLYKLQKGAGKKLKVQYAWTNEELNKVSKDFGK----GYSLQRFKGLGEMNA 586 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV I+ + + LMG K + R K+I+ F Sbjct: 587 DQLWETTMNPDTRTLIRVRIDD----AALAEKRVTTLMGDKVEPRRKWIEHNVKF 637 >gi|310642463|ref|YP_003947221.1| DNA topoisomerase iv, b subunit [Paenibacillus polymyxa SC2] gi|309247413|gb|ADO56980.1| DNA topoisomerase IV, B subunit [Paenibacillus polymyxa SC2] Length = 659 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 238/668 (35%), Positives = 353/668 (52%), Gaps = 39/668 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + A Q+ + Y A I++LEGL VR RPGMYIG T LHHL E++DNA+DE + Sbjct: 8 SAGASGTQNGASEYGADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 67 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 A + + I++++ +G +TV DNGRGIP H T +++ T LHAGGKF S Y+ Sbjct: 68 AKFCSRIDITMHKDGSVTVSDNGRGIPTGMHKM--GIPTPQVVFTILHAGGKFGGSGYKK 125 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200 SGGLHGVG SV NALS+ L V + R I Q+F G P + LE Sbjct: 126 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNTN 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 G++ITF+PD ++F F+ L + Q A+L+ ++ ++ + Sbjct: 186 K-TGSKITFKPDIRVFQSGIHFNYDTLAERLQEIAFLNSGLRIQLKDERS-------GKS 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 +E+++ GG ++ E + ++ I ++ +++ + E I S+ N Sbjct: 238 DEYFYEGGASQFVSFLNEGKDVLHDVIHFNAEKEDIEVEIAIQYNAGYTET---IASFVN 294 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378 +I T GGTHE+G + A TR + YA ++ ++ +DL + ++SV + E E Sbjct: 295 SIPTRGGGTHETGFKTAYTRIMNDYARKTAMLKEKDKNLEGNDLREGMMAVISVKMAEVE 354 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTK +L S A+ TV+ + + +L +NP A L+ ++ S+ R RK R+ Sbjct: 355 FVGQTKDQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREAARKARDE 414 Query: 439 NRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 R L GKL+ ELFIVEGDSAGGSAKQ R+ QA+LPL+GK Sbjct: 415 MRSGKKRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKP 474 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 +N + I N + + A+G +++ ED Y K+IIMTDAD DGAHI LLL Sbjct: 475 MNPEKSKLADIMKNDEYRAITAAIGAGVGTEFTLEDSNYSKIIIMTDADTDGAHIQVLLL 534 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKI 612 TFFY+ M +LI+ +F+ PPL++IT+ + YA +E L+EF ++ Sbjct: 535 TFFYRYMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRN----F 590 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 E+ R+KGLGEM QL ET M+ RTLLRV+I + ++ LMG K D R + Sbjct: 591 ELQRYKGLGEMNPDQLWETTMNPESRTLLRVQIED----AAKAERRVSTLMGDKVDPRKR 646 Query: 673 FIQERASF 680 +I E F Sbjct: 647 WIVENVDF 654 >gi|148997114|ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70] gi|168492965|ref|ZP_02717108.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06] gi|168575469|ref|ZP_02721405.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016] gi|194396954|ref|YP_002037451.1| DNA gyrase subunit B [Streptococcus pneumoniae G54] gi|307067411|ref|YP_003876377.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200] gi|73916242|gb|AAZ92989.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916254|gb|AAZ92995.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916268|gb|AAZ93002.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147756814|gb|EDK63854.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70] gi|183577070|gb|EDT97598.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06] gi|183578470|gb|EDT98998.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016] gi|194356621|gb|ACF55069.1| DNA gyrase, B subunit [Streptococcus pneumoniae G54] gi|306408948|gb|ADM84375.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Streptococcus pneumoniae AP200] Length = 648 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + +E E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKREGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|304404372|ref|ZP_07386033.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9] gi|304346179|gb|EFM12012.1| DNA topoisomerase IV, B subunit [Paenibacillus curdlanolyticus YK9] Length = 657 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 243/666 (36%), Positives = 357/666 (53%), Gaps = 41/666 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A + SA YDA I+ILEGL VR RPGMYIG T LHHL E++DNA+DE +A + Sbjct: 9 AKESPSAERKYDADDIQILEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKH 68 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I+V++ + ++V DNGRGIP H T +++ T LHAGGKF Y+ SGG Sbjct: 69 CSAIDVTIHKDNSVSVKDNGRGIPTGMHK--SGIPTPQVVFTMLHAGGKFGGGGYKKSGG 126 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKR 203 LHGVG SV NALS+ L V + R + Q+F G P++ L N+ Sbjct: 127 LHGVGASVTNALSEWLEVEIYRDGKVHKQRFEYWTDADGKEHVGEPVTGLTIIGNT-NRT 185 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT++TF+PD ++F + L + Q A+L+ +K ++ E F Sbjct: 186 GTKVTFKPDGRVFQSGTTINFDSLSERLQEIAFLNSGLKVTLKDERSGNE-------VVF 238 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322 ++ GG K ++Q E+++++ E+ EK VE A+ + + I S+ N+I Sbjct: 239 HYEGGAKQFVQFLNEDKTVLH-EVVHFAAEKDEI---EVEIALQYNDGYTETIASFVNSI 294 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFA 380 T GGTHE+G + A TR + YA ++ ++ +DL + ++++ + E EF Sbjct: 295 PTRGGGTHETGFKTAYTRIMNDYARKNALLKEKDKNLEGNDLREGMMVVINIKMSEVEFV 354 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQTK +L S A+ V+ + D +L +NP A L++ I+ S+ R RK RE R Sbjct: 355 GQTKDQLGSASARSAVDAVVTDKMAVFLEENPQAAQMLMKKAIQASKAREAARKAREEIR 414 Query: 441 KTAIRK--LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + L GKL ELFIVEGDSAGGSAKQ R+ +QA+LPL+GK +N Sbjct: 415 SGKKKSESSNLGGKLTPAQSKDIARNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMN 474 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 A I N + ++ A+G ++ E+ Y K+IIMTDAD DGAHI LLLTF Sbjct: 475 PEKAKLLDILKNDEYKAIIAAIGAGVGPEFDGEECNYNKIIIMTDADTDGAHIQVLLLTF 534 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEI 614 FY+ M LI+ +++ PPL+++T+ + YA +E Q L+EF K+ E+ Sbjct: 535 FYRYMKPLIDAGKVYIAQPPLYKLTRKSGKLETVRYAWTDEQLQNYLKEFGKN----YEL 590 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM QL ET M+ RTLL+V+I + ++ LMG K D R ++I Sbjct: 591 QRYKGLGEMNPDQLWETTMNPETRTLLQVQIED----AAKAERRVSTLMGDKVDPRKRWI 646 Query: 675 QERASF 680 + F Sbjct: 647 IDNVDF 652 >gi|117924029|ref|YP_864646.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1] gi|117607785|gb|ABK43240.1| DNA topoisomerase IV subunit B [Magnetococcus sp. MC-1] Length = 649 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 304/655 (46%), Positives = 420/655 (64%), Gaps = 18/655 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P + + S++YDAS I +LEGLE +R RPGMYIGGTD +ALHHL +EV+DNAMDE G Sbjct: 3 PPAFDGAMSESYDASQIEVLEGLEGIRKRPGMYIGGTDLRALHHLVAEVLDNAMDEAGEG 62 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+ I ++L +G ++V+DNGRGIPV HP++P +S LE++ TTLH+GGKF+N Y S Sbjct: 63 HADKITLTLHKDGSVSVLDNGRGIPVAPHPRYPGQSALEVVFTTLHSGGKFNNDAYATSA 122 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+ V ALS V V R +++ +FSRG + + +R TR+ F+PD Sbjct: 123 GLHGVGVCAVTALSVWTDVQVHRDGYVWNARFSRGK-VETPVVRGDESRRRSTRVQFQPD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+IF + RL++M +S+AYL V+ + + E F+FP GL + Sbjct: 182 PEIFPSTI-LNPDRLIEMCRSRAYLQRGVRMTVKLEAKGEEHL-------FHFPNGLSDF 233 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGT-VEWAIAWCEENPEIT-SYCNTILTDEGGTH 330 ++ ++ L+ + F G+ G + VEWAI W E + S+CNT+ T +GG H Sbjct: 234 IREISKDSRLVVEDPFEGRITGLGDAGKSRVEWAILWDEVDESRLRSHCNTVPTPDGGVH 293 Query: 331 ESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 E+G R AL RG++ + + +++ +D+M +G++S+FI +P+F+GQTK KL + Sbjct: 294 EAGFRAALLRGMRDFADSRNMMPKNVALTGEDIMGGMMGVISLFIPDPQFSGQTKDKLTN 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 R VE+A++D DH+L P AT+L+ +IER++ER+ RRK+ V RK+ +L Sbjct: 354 GYVSRMVESAIKDNLDHWLHGQPERATRLVGAMIERAQERINRRKKTPLVKRKSPTSRLT 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + TELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV A SEK Sbjct: 414 LPGKLTDCIKTDPDFTELFIVEGDSAGGSAKQARDRHTQAILPLRGKILNVEQANSEKFE 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N ++ L A+GC + LRY +VIIMTDADVDGAHIASLLLTFFY+ M DL+ Sbjct: 474 KNAEVQALTTAIGCGVGRAFDITALRYGRVIIMTDADVDGAHIASLLLTFFYRFMPDLVH 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQ 627 + HL+L PPLF++T G +SVYA DE K++++ + K+EISRFKGLGEM SQ Sbjct: 534 RGHLYLAQPPLFKVTVGRESVYALDEHEKERVINRLTRSKPNAKVEISRFKGLGEMPPSQ 593 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 LKET M + R LLRV ++ D T D+ ++LMG + ERFKFIQE A F Sbjct: 594 LKETTMQPSSRRLLRVMVDDD----HVTSDTFDRLMGKRPAERFKFIQEHADFAK 644 >gi|154482535|ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC 27560] gi|149736560|gb|EDM52446.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC 27560] Length = 635 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 239/654 (36%), Positives = 366/654 (55%), Gaps = 30/654 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NYD +SI +LEGL+PVR RPGMYIG K L+HL E++DN++DE +AGY + I V+ Sbjct: 2 ANNYDGNSISVLEGLDPVRKRPGMYIGSVGTKGLNHLIYEIVDNSVDEHLAGYCSEITVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ +G TV DNGRGIPV+ + + + +E++ TTLHAGGKF + Y+ISGGLHGVG S Sbjct: 62 LEKDGSATVEDNGRGIPVDINEQV-GRPAVEVVFTTLHAGGKFGDGNYKISGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V V R I++Q++ +G L++ K +N GT+++F PD +IF Sbjct: 121 VVNALSLWLEVNVKRDGKIYNQRYEQGKVCYDLKEAGKCRKNDTGTKVSFFPDAEIFEKI 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F A + AYL+ + + + E+ + G+K ++ + Sbjct: 181 Y-FKADSIKSRLHETAYLNPNLTIIFINKRVGEEEEVTFHE-----ENGIKAFISDMNKE 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + ++I K E+ G VE A + + I+ +CN I T EGGTH +G + L Sbjct: 235 KEKV-TDIIYFKKEQDGI---EVEIAFQYINDFTENISGFCNNIYTQEGGTHITGFKSIL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T I +YA ++ + D+ V +++V +P F GQTKTKL + DA++ Sbjct: 291 TSTINQYARELGILKEKDNNFTGADVRNGLVAVVAVKHPDPRFEGQTKTKLDNPDAEKVT 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++ + + +N ++ + ++ R + + + + GKL++C Sbjct: 351 KSIAGEQLTLFFDKNLETLKNVISCAEKSAKIRKAEERTKTNLLSKSKFSIDSNGKLSNC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 E+FIVEGDSAGGSAK ARNR QA++P+RGKILNV A +K+ N +I + Sbjct: 411 ESRKPEECEIFIVEGDSAGGSAKSARNRKTQAIMPIRGKILNVEKASMDKVLANAEIKTM 470 Query: 517 VQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + A GC + + E LRY K+I+MTDADVDGAHI +LLLTFFY+ M +LI H+ Sbjct: 471 INAFGCGFSEGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLLLTFFYRFMPELITHGHI 530 Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ +PPL+++ + + Y +D+ K LE+++KH G + R+KGLGEM QL ET Sbjct: 531 YIATPPLYKVVPKKGEGEYLYDD----KALEKYRKHHTG-FTLQRYKGLGEMDPKQLWET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ R L +VEI K D + LMG++ R FI A+ + + Sbjct: 586 TLNPETRILKQVEIED----AKMASDVTSMLMGSEVAPRRNFIYTHATDAE-LD 634 >gi|227831835|ref|YP_002833542.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] gi|262183099|ref|ZP_06042520.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] gi|227452851|gb|ACP31604.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] Length = 681 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 255/687 (37%), Positives = 375/687 (54%), Gaps = 58/687 (8%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA SI ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+ + V+L Sbjct: 7 YDAGSITILEGLEAVRKRPGMYIGSTGARGLHHLIWEIVDNSVDEAMAGYADKVIVTLRE 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V+DNGRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 67 DGGIEVIDNGRGIPVEMH--ASGVPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS + + R + Q F+ IP +E GT I F PDP+IF F+ Sbjct: 125 ALSTRVEADIKRDGKHWYQNFNNAIPDELVE--GDNARGTGTTIRFWPDPEIFETV-EFN 181 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK---------------------------------- 249 + + Q A+L+ + ++ Sbjct: 182 YDTIARRLQEMAFLNKGLTIVLRDERAISKEQAELEEIAEAGDSAVSLTSLDEKEKSEEA 241 Query: 250 --EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 EK ++ +++P GL+ Y++ +N++ I I + + VE A+ Sbjct: 242 GDGSEEKTSKKKEVTYHYPNGLQDYVEHLNKNKTAIHPTIVAFDVKGEDH---EVEIALQ 298 Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMI 364 W + + ++ NTI T EGGTHE G R ALT + +YA+ + ++ ++ DD Sbjct: 299 WNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEKDGNLSGDDCRE 358 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 ++SV + +P+F GQTKTKL + + + V+ ++ + + + NP EA ++ + Sbjct: 359 GLAAVISVKVADPQFEGQTKTKLGNSEIRGFVQRSVNEHLNDWFDANPAEAKVIINKAVS 418 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 + R+ RK RE V RK+A LPGKLADC + TEL+IVEGDSAGGSAK R+ Sbjct: 419 SAHARVAARKARELVRRKSAGDLGGLPGKLADCRSKDSKRTELYIVEGDSAGGSAKGGRD 478 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ LRY+K+++M D Sbjct: 479 SMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDISKLRYDKIVLMAD 538 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILE 602 ADVDG HIA+LLLT ++ M L+E H+FL +PPL+++ G + YA + + + L Sbjct: 539 ADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWGKGQPGYAFSDAERDEQLA 598 Query: 603 EFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 E + G+ KI I R+KGLGEM A++L ET +D R L RV DL + + Sbjct: 599 EGLEQGR-KINKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRV----DLEDAQRADEL 653 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI RA + + Sbjct: 654 FSILMGDDVAARRSFITRRAKDVRFLD 680 >gi|118470463|ref|YP_885621.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] gi|118171750|gb|ABK72646.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 639 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 245/655 (37%), Positives = 363/655 (55%), Gaps = 27/655 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NYDA SI ILEGL+ VR RPGMYIG T E+ LHH+ EV+DN +DE +AG+A ++V Sbjct: 2 STTNYDAGSITILEGLDVVRKRPGMYIGSTSERGLHHMVWEVVDNGVDEAMAGHATRVDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y++SGGLHGVG+ Sbjct: 62 TLLADGGVQVCDDGRGIPVAMHE--TGIPTVDVVMTQLHAGGKFDSESYQVSGGLHGVGV 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L V + R + Q + +P + GT + F DP +F Sbjct: 120 SVVNALSTRLEVDIHRDGYEWHQHYDHSVPATLTR--GNPSGGTGTTVRFWADPDVFET- 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + A + + Q A+L+ + + ++ P+ F+ PGGL Y++ Sbjct: 177 TTYSAETIARRLQEMAFLNKGLILTLTDQRD-----PEPQTRTFHHPGGLIDYVKHINRV 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + I I + E G VE A+ W + ++ NTI T EGGTHE G R AL Sbjct: 232 KDPIQPSIIAFEGEGPGH---EVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAAL 288 Query: 339 TRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T + +Y + + ++ DD+ ++SV + EP+F GQTKTKL + + V Sbjct: 289 TSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNAAIRSFV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + + H+L NP+EA ++ V ++ R+ RK RE V RK+A LPGKLAD Sbjct: 349 QKVCHEQLTHWLEANPVEAKVIITKVASSAQARIAARKARELVRRKSATDIGGLPGKLAD 408 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +EL++VEGDSAGGSAK R+ QA+LPLRGKI+NV A +++ N ++ Sbjct: 409 CRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQS 468 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG ++ LRY K+++M DADVDG HI++LLLT ++ M L+E H+FL Sbjct: 469 IITALGTGIHDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIFLA 528 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKE 630 PPL+++ + +A+ + + +LE + GK KI I R+KGLGEM A +L E Sbjct: 529 QPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK-KINVDDGIQRYKGLGEMDAKELWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + R L +V ++ + + LMG + R FI A I + Sbjct: 588 TTMDPSVRVLRQVTLDD----AAAADELFSILMGDDVEARRGFITRNAKDIRFLD 638 >gi|302336536|ref|YP_003801743.1| DNA gyrase subunit B [Olsenella uli DSM 7084] gi|301320376|gb|ADK68863.1| DNA gyrase subunit B [Olsenella uli DSM 7084] Length = 667 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 254/676 (37%), Positives = 371/676 (54%), Gaps = 38/676 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +Y AS I++L+GLE VR RPGMYIG T + LHHL E++DN++DE +AG+ N Sbjct: 2 PSKNEHSYGASEIKVLKGLEAVRKRPGMYIGTTSKTGLHHLVWEIVDNSVDEAMAGFCNK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V++ + +TVVDNGRGIP HP K TLE++LT LHAGGKFDN+ Y++SGGLHG Sbjct: 62 IQVTVHADNSVTVVDNGRGIPTAMHP-VERKPTLEVVLTVLHAGGKFDNNAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VGISVVNALS L V R I + SRG + K N GT +TF PD +I Sbjct: 121 VGISVVNALSKRLVAQVKRDGVINEIELSRGKVTKKMHKVGTCSPNVTGTTVTFWPDDQI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F +D L Q A+L+ VK + ++E+ P +EF + GG+ +++ Sbjct: 181 FET-MTYDYDTLHDHLQETAFLNKGVKIVLTDERELV-----PRVDEFCYAGGIIDFVKF 234 Query: 276 KLENRSL--ISSEIFTGKTEKK----GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 E +++ S+ + +++G VE ++ W E+ S+ N I T+EGG Sbjct: 235 LNEGKTVLSGCSKPIYIEGTSDPAAPESNKGEVEVSMQWNSGYSEMVMSFANDIYTEEGG 294 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 H G R ALT+ + YA + +R ++ DD+ ++SV + +P+F GQTK K Sbjct: 295 MHLEGFRTALTKTVNDYARNHKLLKERDSNLTGDDIREGMTAVISVKLPDPQFEGQTKAK 354 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L S + + YL ++P +A ++ + + ++ RL +K R+ RK+ + Sbjct: 355 LGSSYMRTLTNKIVSAGLAEYLEEHPNQAREMFKKAAQAAKGRLAAQKARQATRRKSILE 414 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS A TELFIVEGDSAGGSAK R R QA+LPLRGKILNV G Sbjct: 415 SAALPGKLADCSVRDASMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDH 474 Query: 506 KIRNNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 + +++ I L+ A+G + RY K+IIMTDADVDGAHI LL+TFF Sbjct: 475 RAFSSETIQSLITAIGTGVTMSNGEGGDFDIAKARYHKIIIMTDADVDGAHIRILLMTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH------KQKILEEF----KKHGK 609 Y+ M LI+ ++ PP+F + G + Y + + Q+ +EE ++ + Sbjct: 535 YKYMRPLIDAGFVYAACPPIFGVKVGKRIHYVYPDSETDENVLLQQAIEECVPRDEEGKQ 594 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 K + R+KGLGEM QL +T MD R L R+ I+ + ++++LMGT + Sbjct: 595 RKYSVQRYKGLGEMDPQQLADTTMDPKTRILQRISIDD----AARAERAVSRLMGTSVEY 650 Query: 670 RFKFIQERASFIDDVG 685 R +I++ A + Sbjct: 651 RRDYIEQHAKDARFLD 666 >gi|325066318|ref|ZP_08124991.1| DNA gyrase subunit B [Actinomyces oris K20] Length = 675 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 250/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IEV++ +G + V DNGRGIPV+ HP +K T+E+++T LHAGGKF Y +SGG Sbjct: 62 CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS + V RQ ++ F+ G K + + GT TF PDP Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATDSTGTTQTFYPDP 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 IF FD L + Q A+L+ ++ + ++ + G Sbjct: 181 TIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVGF 239 Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313 + + + GL+ Y+ +++ L+ EI + E+ H ++E A+ W Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQSLGENHSISLEIAMQWTSAYSE 299 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + +Y NTI T EGGTHE G R ALT + KYA +R ++ DD+ ++S Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F GQTKTKL + +A+ V+ + +L +P +A ++ + + RL Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARLA 419 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE R+ + +PGKL DCS A +E+FIVEGDSAGGSA R+ +QA++ Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG H Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDIAKLRYGKIVIMADADVDGQH 539 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609 IA+LLLT ++ M LIE H ++ PPL+R+ + +A+ + + K+L ++ G+ Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEKGR 599 Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655 Query: 667 ADERFKFIQERASFIDDVG 685 ++R FIQ AS + + Sbjct: 656 VEQRRSFIQRNASDVRFLD 674 >gi|139474074|ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo] gi|134272321|emb|CAM30575.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo] Length = 650 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 376/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEIIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPIVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 645 >gi|317471524|ref|ZP_07930875.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] gi|316901019|gb|EFV22982.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] Length = 637 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 250/651 (38%), Positives = 356/651 (54%), Gaps = 28/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +S NYDA+SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AG+ + I V Sbjct: 2 SSQNYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGHCDEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + DNGRGIPV + + S +E++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 TLKDDGTAVIEDNGRGIPVGINEQ-TGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS L VTV + I+ + F RG PL R + GT+I F PDP+IF Sbjct: 121 SVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVIGSCRKSETGTKIRFLPDPEIFDK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F AA + AYL+ +K + ++ E ++ P G+ Y++ + Sbjct: 181 TY-FKAAMIRNRLHETAYLNPELKIHYINERSGEETE-----VLYHEPEGICAYVKKLND 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ K+ + E A + + I +CN I T EGGTH +G + Sbjct: 235 GKHVLHDPVYY----KREINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSK 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T + +YA ++ + D+ I+SV EP F GQTKTKL + DA + Sbjct: 291 FTAVMNQYARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V D + +N K+L + ++ R K + + GKL++ Sbjct: 351 VGEITGDETVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDSNGKLSN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESRKPEECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ GC + + E LRY+K++IMTDADVDGAHIA+LLLTFFY+ M +LI H Sbjct: 471 MINTFGCGFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530 Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++L +PPL++ I + K Y D+ LE++K KG + R+KGLGEM ASQL E Sbjct: 531 VYLATPPLYKAIPKKGKETYLFDD----TALEKYKAAHKGPFTLQRYKGLGEMDASQLWE 586 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 T +D RTL ++EI + T + LMG++ R +FI + A Sbjct: 587 TTLDPETRTLKQIEIEDARMASDVT----SMLMGSEVPPRRQFIYDNAEDA 633 >gi|15900699|ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4] gi|15902759|ref|NP_358309.1| DNA gyrase subunit B [Streptococcus pneumoniae R6] gi|111658143|ref|ZP_01408840.1| hypothetical protein SpneT_02000668 [Streptococcus pneumoniae TIGR4] gi|116516156|ref|YP_816203.1| DNA gyrase subunit B [Streptococcus pneumoniae D39] gi|149007692|ref|ZP_01831309.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74] gi|168486180|ref|ZP_02710688.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00] gi|225856480|ref|YP_002737991.1| DNA gyrase subunit B [Streptococcus pneumoniae P1031] gi|61225463|sp|P0A4L9|GYRB_STRPN RecName: Full=DNA gyrase subunit B gi|61225464|sp|P0A4M0|GYRB_STRR6 RecName: Full=DNA gyrase subunit B gi|14972283|gb|AAK74943.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4] gi|15458306|gb|AAK99519.1| DNA gyrase [Streptococcus pneumoniae R6] gi|73916240|gb|AAZ92988.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916246|gb|AAZ92991.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916250|gb|AAZ92993.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916256|gb|AAZ92996.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916258|gb|AAZ92997.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916270|gb|AAZ93003.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916328|gb|AAZ93032.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916336|gb|AAZ93036.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916346|gb|AAZ93041.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916348|gb|AAZ93042.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|116076732|gb|ABJ54452.1| DNA gyrase, B subunit [Streptococcus pneumoniae D39] gi|147760847|gb|EDK67818.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74] gi|183570816|gb|EDT91344.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00] gi|225726173|gb|ACO22025.1| DNA gyrase, B subunit [Streptococcus pneumoniae P1031] Length = 648 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|225870671|ref|YP_002746618.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047] gi|225700075|emb|CAW94141.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047] Length = 649 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 240/652 (36%), Positives = 364/652 (55%), Gaps = 34/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V+L+ Sbjct: 10 NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G T+ D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 NALS L V + R ++ Q+F G + ++K GTR+TF PD KIF Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMPDDKIFSTT- 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L VK + + P EEF++ G++ ++ E++ Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ I+ E+ VE A+ + + + S+ N + T +GG+HE+GL+ A+T Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 VE+ + + +L++N A L+ I+ + R R+ R+ +R K GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +V +G + + +D+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMVYTIGAGVGADFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G K YA + + + +EF K + R+KGLGEM A QL Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----SLQRYKGLGEMNADQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + RTL+RV I+ L + ++ LMG KA R ++I++ +F Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641 >gi|148985841|ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71] gi|73916286|gb|AAZ93011.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916318|gb|AAZ93027.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916322|gb|AAZ93029.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916344|gb|AAZ93040.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147921987|gb|EDK73111.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71] gi|301799821|emb|CBW32390.1| DNA gyrase subunit B [Streptococcus pneumoniae OXC141] Length = 648 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVAELEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLAAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|299822648|ref|ZP_07054534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] gi|299816177|gb|EFI83415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] Length = 657 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 37/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ SI++LEGL+ VR RP MYIG TD + LHHL E++DN++DE +AG+ I V + Sbjct: 6 NEYNDDSIQVLEGLDAVRKRPAMYIGSTDVRGLHHLVYEIVDNSVDEALAGFGERITVKI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVGIS 160 + +++ D GRG+PV H KST+E+ILT LHAGGKF Y+ SGGLHGVG S Sbjct: 66 YKDQSISIEDEGRGMPVGTHK--TGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSS 123 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 VVNALS+ L VTV R I+ Q F+ G P+ L+K K + RGT+I F+PDP IF Sbjct: 124 VVNALSEWLKVTVYRDGAIYEQNFADGGKPVDKLKKIGKTKR-RGTKIHFKPDPAIFP-M 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L + + A+L + S ++ AE E F F G+K +++ E Sbjct: 182 TSFNYDTLSERLRESAFLLKGMAIELSDERTGAE-------EIFQFEEGVKNFVEYINEG 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + ++ + + +E A + + I S+ N + T GTHESG++ A+ Sbjct: 235 KDVLHPVVDI----DGESGSIEMELAFQFNDGYSENILSFVNNVRTRGAGTHESGMKAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 TR YA ++ ++ D+ +LS+ + E +F GQTK KL + +A+ Sbjct: 291 TRVFNDYARRVGMLKEKDKNLEGSDIREGLSAVLSIRVPENLLQFEGQTKEKLGTAEARA 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPG 451 V+ + + ++L +NP ++ L++ I+ E R RK RE R RK L G Sbjct: 351 AVDAVVTEHLAYFLAENPDTSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL + EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I N+ Sbjct: 411 KLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNE 470 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G +++ ED Y+K++IMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 471 EISTIIHTVGAGVGAEFNLEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGK 530 Query: 572 LFLISPPLFRITQG--TKSV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +F+ PPL+++++G K V YA ++ + + + K I R+KGLGEM A Q Sbjct: 531 IFIALPPLYKVSKGAGKKEVLEYAWTDDELEGAISKIGK----GYMIQRYKGLGEMNADQ 586 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD RTL+RV I+ + + + LMG K + R K+I++ F Sbjct: 587 LWETTMDPETRTLIRVRIDD----IARAERRVATLMGDKVEPRRKWIEKHVEF 635 >gi|269115151|ref|YP_003302914.1| DNA gyrase subunit B [Mycoplasma hominis] gi|290457646|sp|P43053|GYRB_MYCHP RecName: Full=DNA gyrase subunit B gi|268322776|emb|CAX37511.1| DNA gyrase subunit B [Mycoplasma hominis ATCC 23114] Length = 648 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 268/653 (41%), Positives = 363/653 (55%), Gaps = 26/653 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A +I+ILEGLE VR RPGMYIG K LHHL E++DN++DE +AG+A I++ L Sbjct: 10 YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 N + V DNGRG+P H KS +E ILT LHAGGKFD S Y++SGGLHGVG SVVN Sbjct: 70 NNVIEVEDNGRGMPTGIHS-GTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVN 128 Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 ALS E V V R + Q+F G IP+ PLE V + GT I F PD I + Sbjct: 129 ALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKEN- 187 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD ++ ++ AYL+ +K ++ K F F GGL Y++ + + Sbjct: 188 FDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKV-------FCFEGGLIDYVKELNKGKK 240 Query: 282 LISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLR 335 LI E+ + VE A+ + E I SY N I T +GGTHE G Sbjct: 241 LIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFY 300 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 AL R YAE + + I +D+ V I+S+ +P F GQTK KL + DA+ Sbjct: 301 DALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDAR 360 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGK 452 L D + YL +NP A ++E + RL K RE +RK + LPGK Sbjct: 361 IATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGK 420 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A ELFIVEG+SAGGSAK R+RS QA+LPLRGK++N + +N++ Sbjct: 421 LADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKE 480 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ALG +++ L+Y K+IIMTDADVDGAHI +LLLTFFY+ M LIE + Sbjct: 481 IATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFV 540 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL++IT G YA+++ K++I+ + K + I R+KGLGEM QL ET Sbjct: 541 YLAQPPLYKITSGKNVEYAYNDLQKEQIMAKL--EDKRNVAIQRYKGLGEMDPEQLWETT 598 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +L+V+I+ LMG + + R FIQE A + +++ Sbjct: 599 MDPETRKMLQVQIDDAAIC----DTVFATLMGEEIEPRHDFIQENAKYANNID 647 >gi|225868402|ref|YP_002744350.1| topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus] gi|225701678|emb|CAW99000.1| topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus] Length = 649 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 242/652 (37%), Positives = 365/652 (55%), Gaps = 34/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V+L+ Sbjct: 10 NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G T+ D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 NALS L V + R ++ Q+F G + ++K GTR+TF PD KIF Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMPDDKIFSTT- 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L VK + + P EEF++ G++ ++ E++ Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ I+ E+ VE A+ + + + S+ N + T +GG+HE+GL+ A+T Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 VE+ + + +L++N A L+ I+ + R R+ R+ +R K GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGILSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G K YA + + + +EF K + R+KGLGEM ASQL Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----TLQRYKGLGEMNASQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + RTL+RV I+ L + ++ LMG KA R ++I++ +F Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641 >gi|169836509|ref|ZP_02869697.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate TM7a] Length = 660 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 262/674 (38%), Positives = 384/674 (56%), Gaps = 38/674 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +NQ S +YD S I++LEGLEPVR RPGMYIG T +HHL E+ DN++DE IAG+A Sbjct: 1 MSNQINSGSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIADNSIDEAIAGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V + +G +TV D+GRGIPV+ HPK S LE +LT LHAGGKF Y++S GL Sbjct: 61 TRVDVKILKDGGITVTDDGRGIPVDKHPK-TGLSALETVLTVLHAGGKFGGGGYKVSSGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS ++ V R ++ +F RG + PL+K K GT ITF PDP Sbjct: 120 HGVGSSVVNALSTKMIAEVVRDGQLYRVEFERGKIVQPLKKIGKTNRVTGTSITFYPDPT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + FD ++ + ++YL+ V T ++ E++ FYF GG+++Y++ Sbjct: 180 IFKETVDFDYKWVVNYLRHQSYLTKGVFTSVQDER-------TQERQAFYFEGGIRSYVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 + +IS IF + + VE A+ + + E+ + N +LT +GGTH G Sbjct: 233 NLNIGKDVISENIFYVE---RPVEDCMVEIALQYNDTYTEMVKPFANNVLTPDGGTHLVG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I YA ++ ++ DD+ ++ V + +P+F GQTK KL + + Sbjct: 290 FKAALTRVINDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLE-WVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +R V+ + + F +YL +NP A K++ ++ R R + + RK A+ L LP Sbjct: 350 MRRYVDQVMSEYFSYYLEENPSIAKKVVNKALLAARARRAARAARDNIIRKGALDGLNLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A EL+IVEGDSAGGSAK R+ QA+LPLRGK+LN A +++ N Sbjct: 410 GKLADCSSKDAKECELYIVEGDSAGGSAKSGRDSRTQAILPLRGKVLNTERARLDRMLAN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I+ L++ +G + LRY ++IIMTDADVDG+HIA+LL+TFF++ M +++E Sbjct: 470 NEIVSLIKGMGVGIGDTFDISGLRYHRIIIMTDADVDGSHIATLLMTFFFRHMKEVVEGG 529 Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEF---KKHGKGKIE------------- 613 H++L PPL+ + G K YA+ +E K ++ E ++ KI Sbjct: 530 HIYLAKPPLYLLKAAGNKKWYAYSDEEKDNMISELIEKRRSNGAKINPDDSPMKQAGLND 589 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 I R+KGLGEM A QL ET M R L++V++ + +KLMG + R F Sbjct: 590 IQRYKGLGEMDADQLWETTMKPENRVLIQVKVED----AERADAIFSKLMGDEVSLRKSF 645 Query: 674 IQERASFI--DDVG 685 IQ RA D++ Sbjct: 646 IQTRAKDANFDELD 659 >gi|319892372|ref|YP_004149247.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317162068|gb|ADV05611.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius HKU10-03] Length = 665 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 235/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY +I++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DE++ GY N I V++ Sbjct: 7 NNYSDDAIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 67 NEDESITVADNGRGMPTGTH--RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V + R IF Q+F+ G K+ K GT +TF+PD +IF Sbjct: 125 VNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATS 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + Q A+L +K + E+ E +++ G+K ++ E + Sbjct: 185 FNFETLSERLQESAFLLQNLKITLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 ++ T + + ++ + + I S+ N + T +GGTHE G + A+TR Sbjct: 240 VLHDVALFQGTANEIEVDVSFQYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ V+ Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + YL + + L++ I+ + R RK RE R K L GKL Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N++I Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +G + + +D Y ++IIMTDAD DGAHI LLLTFF++ M L+ +++ Sbjct: 477 TIIHTIGAGVGNDFNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYI 536 Query: 575 ISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++ +G K YA +E +K+ E K + R+KGLGEM QL E Sbjct: 537 ALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWE 592 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ ++ S + ++ LMG K R ++I+ F Sbjct: 593 TTMNPETRTLIRVQIDDEVRSSQR----VSTLMGDKVAPRREWIERHVQF 638 >gi|71894694|ref|YP_278802.1| DNA gyrase subunit B [Mycoplasma synoviae 53] gi|71851482|gb|AAZ44091.1| DNA gyrase subunit B [Mycoplasma synoviae 53] Length = 650 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 375/661 (56%), Gaps = 26/661 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y+A SI +LEGLE VRMRPGMYIG D+ LHHL E++DN++DEV+AGYA Sbjct: 4 KNKVQNNAEYNADSIEVLEGLEAVRMRPGMYIGSKDKTGLHHLIWEIVDNSVDEVLAGYA 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I++++ +G ++V DNGRGIPV+ H K KS LEI+ T LHAGGKF + Y++SGGL Sbjct: 64 DNIKITITKDGGVSVEDNGRGIPVDMHSK--GKSALEIVFTGLHAGGKFKSDAYKVSGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPD 212 HGVG SVVN LS L V V R ++ +F G L K + NK GT++ F PD Sbjct: 122 HGVGASVVNGLSSYLGVWVKRNGNVYFAEFKDGGKLEAPIKVIETTGDNKTGTKVLFYPD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 I FD ++ + AYL+ ++ S +++ + EF +P G+ + Sbjct: 182 FTIMDKN-EFDKNLIVDRIRQTAYLNKNLRISLSDERDNS-------FVEFCYPNGILDF 233 Query: 273 LQTKLENRS--LISSEIFTGKTEKKGTHRGTVEWAIAWCEE----NPEITSYCNTILTDE 326 L ++++ I+T + T VE A+ + N +Y N I E Sbjct: 234 LTVITKSKNTLQNDELIYTEGIYQDKTGDVKVEIAMRYMASAAKSNAVAYAYTNNIYNKE 293 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTH +G LTR YA+ + + +DL + I+S+ PEF GQTK Sbjct: 294 GGTHLNGFFNGLTRIWNNYAQDKKFFKTQGEKFSREDLENNLFLIISIKHNNPEFEGQTK 353 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 KL S +A V + F+ L QNP A ++++++++ RL+ K++E+ +K + Sbjct: 354 HKLNSRNASPAVNKVFSEVFEKTLDQNPKFAEEVIKYLLDFKARRLKDEKEKELQKKKGL 413 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKL+DCS A +EL+IVEG+SAGGSAK R+R QA+LPL+GKILNV Sbjct: 414 GNSSLPGKLSDCSSKNAEESELYIVEGNSAGGSAKMGRDRHFQAILPLKGKILNVEKKDI 473 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 EKI N +I+ L+ ALG + +RY+KVIIMTDAD DG+HI LL+TFF++ Sbjct: 474 EKILKNDEILSLIAALGAGVGQDFNVNKVRYQKVIIMTDADSDGSHIRVLLITFFFKLFR 533 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 LIE L++ PPL++I K YA++E K++IL+ K KI I R+KGLGEM Sbjct: 534 QLIEYGMLYIAQPPLYKIESNKKVYYAYNEAQKEEILDSLDKS--KKIMIQRYKGLGEMN 591 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET MD R +L+V+++ + + +N LMG + + R +FI E A + D+ Sbjct: 592 ADQLWETTMDPKTRKMLQVQVSD----AEKAMEVLNILMGEETEPRKEFIFENAKKVRDI 647 Query: 685 G 685 Sbjct: 648 D 648 >gi|167746702|ref|ZP_02418829.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662] gi|167653662|gb|EDR97791.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662] Length = 637 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 248/651 (38%), Positives = 355/651 (54%), Gaps = 28/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +S NYDA+SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AG+ + I V Sbjct: 2 SSQNYDANSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEFLAGHCDEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + DNGRGIPV + + S +E++ T LHAGGKF + Y+ISGGLHGVG Sbjct: 62 TLKDDGTAVIEDNGRGIPVGINEQ-TGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS L VTV + I+ + F RG PL R + GT++ F PDP+IF Sbjct: 121 SVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVTGSCRKSETGTKVRFLPDPEIFDK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F AA + YL+ +K + ++ E ++ P G+ Y++ + Sbjct: 181 TY-FKAAMIRNRLHETTYLNPELKIHYINERSGEETE-----VLYHEPEGICAYVKKLND 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + ++ ++ K+ + E A + + I +CN I T EGGTH +G + Sbjct: 235 GKHVLHDPVYY----KRDINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSK 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T + +YA ++ + D+ I+SV EP F GQTKTKL + DA + Sbjct: 291 FTAVMNQYARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V D + +N K+L + ++ R K + + GKL++ Sbjct: 351 VSEITGDETVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDSNGKLSN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESRKPEECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ GC + + E LRY+K++IMTDADVDGAHIA+LLLTFFY+ M +LI H Sbjct: 471 MINTFGCGFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGH 530 Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++L +PPL++ I + K Y D+ LE++K KG + R+KGLGEM ASQL E Sbjct: 531 VYLATPPLYKAIPKKGKETYLFDD----TALEKYKAAHKGPFTLQRYKGLGEMDASQLWE 586 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 T +D RTL ++EI + T + LMG++ R +FI + A Sbjct: 587 TTLDPETRTLKQIEIEDARMASDVT----SMLMGSEVPPRRQFIYDNAEDA 633 >gi|326772839|ref|ZP_08232123.1| DNA gyrase, B subunit [Actinomyces viscosus C505] gi|326637471|gb|EGE38373.1| DNA gyrase, B subunit [Actinomyces viscosus C505] Length = 675 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 251/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IEV++ +G + V DNGRGIPV+ HP +K T+E+++T LHAGGKF Y +SGG Sbjct: 62 CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS + V RQ ++ F+ G K + + GT TF PDP Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATDSTGTTQTFYPDP 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 IF FD L + Q A+L+ ++ + ++ + G Sbjct: 181 TIFET-VDFDYEMLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVGF 239 Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313 + + + GL+ Y+ +++ LI EI + E+ H ++E A+ W Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGENHSISLEIAMQWTSAYSE 299 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + +Y NTI T EGGTHE G R ALT + KYA +R ++ DD+ ++S Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F GQTKTKL + +A+ V+ + +L +P +A ++ + + RL Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARLA 419 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE R+ + +PGKL DCS A +E+FIVEGDSAGGSA R+ +QA++ Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG H Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDIAKLRYGKIVIMADADVDGQH 539 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609 IA+LLLT ++ M LIE H ++ PPL+R+ + +A+ + + K+L ++ G+ Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEKGR 599 Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655 Query: 667 ADERFKFIQERASFIDDVG 685 ++R FIQ AS + + Sbjct: 656 VEQRRSFIQRNASDVRFLD 674 >gi|73916252|gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 375/649 (57%), Gaps = 24/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVIADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHD--EEH--KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PP++ + G++ Y ++ Q+ L + G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGGDQEIKLQEALARYS-EGRTKPTIQRYKGLGEMDDHQLWET 598 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 599 TMDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|149010561|ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75] gi|147765042|gb|EDK71971.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75] gi|332077223|gb|EGI87685.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17545] Length = 648 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+++ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFSSHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE ++ GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 TFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|323464525|gb|ADX76678.1| DNA topoisomerase IV, B subunit [Staphylococcus pseudintermedius ED99] Length = 665 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 235/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY +I++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DE++ GY N I V++ Sbjct: 7 NNYSDDAIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV DNGRG+P H K T+E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 67 NEDESITVADNGRGMPTGTH--RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V + R IF Q+F+ G K+ K GT +TF+PD +IF Sbjct: 125 VNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATS 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + Q A+L +K + E+ E +++ G+K ++ E + Sbjct: 185 FNFETLSERLQESAFLLQNLKITLEDCRVGKERS-----EVYHYEEGIKAFVSYVNEGKE 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 ++ T + + ++ + + I S+ N + T +GGTHE G + A+TR Sbjct: 240 VLHDVALFQGTANEIEVDVSFQYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +YA + ++ +D+ I+SV I E +F GQTK+KL + +A+ V+ Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLA 454 + + YL + + L++ I+ + R RK RE R K L GKL Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N++I Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +G + + +D Y ++IIMTDAD DGAHI LLLTFF++ M L+ +++ Sbjct: 477 TIIHTIGAGVGNDFNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYI 536 Query: 575 ISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+++ +G K YA +E +K+ E K + R+KGLGEM QL E Sbjct: 537 ALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWE 592 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTL+RV+I+ ++ S + ++ LMG K R ++I+ F Sbjct: 593 TTMNPETRTLIRVQIDDEVRSSQR----VSTLMGDKVAPRREWIERHVQF 638 >gi|296447781|ref|ZP_06889695.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b] gi|296254700|gb|EFH01813.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b] Length = 672 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 372/646 (57%), Positives = 485/646 (75%), Gaps = 7/646 (1%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YDA+SI +LEGLEPVR RPGMYIGG DE A+HHLF+EV+DN+MDE +AG+A+ IEVSL+ Sbjct: 30 EYDAASIEVLEGLEPVRRRPGMYIGGKDEAAMHHLFAEVLDNSMDEAVAGHASFIEVSLE 89 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G+LTV+DNGRGIPV HPKFP KS LE+++T LHAGGKFD+ Y+ SGGLHGVG+SVV Sbjct: 90 PDGWLTVIDNGRGIPVGPHPKFPKKSALEVVMTMLHAGGKFDSGAYQTSGGLHGVGVSVV 149 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V VA+ ++ Q FSRG+P LE+ ++ N+RGT+I F+PD +IFG + Sbjct: 150 NALSERLEVEVAQNQQLYRQIFSRGLPQGKLEELGRIANRRGTKIRFKPDAEIFGAATHW 209 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAE-KYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ARL +M +SKAYL G V+ W C + E +P + FPGGL+ YL + E + Sbjct: 210 RPARLFRMARSKAYLFGGVEIRWRCAPALIEPGSDVPAEAVLRFPGGLRDYLARETEGKD 269 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALTR 340 L++ + F GK +++G H G++EWAIAW + SYCNTI T +GGTHE+G R+AL R Sbjct: 270 LVADQPFVGKVQREGGH-GSLEWAIAWFTHEDGFSHSYCNTIPTPDGGTHEAGFRLALLR 328 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 G+K +AE KRA + +DDLM + ++SVFIREPEF GQ KT+L++++A R VEN Sbjct: 329 GLKDHAERIGQAKRAALLTADDLMGQSAAMISVFIREPEFQGQNKTRLMNVEASRVVENT 388 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RD FDH+L P +ATKLL++ +ER+EERLRRR ++E RK+ RKLRLPGKLADC+ Sbjct: 389 VRDAFDHWLAGAPSQATKLLDFAVERAEERLRRRAEKEQARKSPTRKLRLPGKLADCTNT 448 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 A G+ELFIVEGDSAGGSAK AR+R++QAVLPLRGKILNVASAG EK NQQ+ DL QA Sbjct: 449 SAQGSELFIVEGDSAGGSAKAARDRASQAVLPLRGKILNVASAGKEKFAANQQLADLAQA 508 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LGC + S YR+EDLRY+K+I+MTDADVDGAHIASLL+TFF+++M LI+ HL+L PPL Sbjct: 509 LGCGSGSHYRDEDLRYDKIIVMTDADVDGAHIASLLITFFFRQMPKLIDGGHLYLAVPPL 568 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++TQG K+VYA D+ H+ +++++ GKGKIE SRFKGLGEM+ +QLKET MDA KRT Sbjct: 569 YKLTQGAKTVYARDDRHRDELVKKVL-TGKGKIETSRFKGLGEMMPAQLKETTMDAKKRT 627 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V I ++T D + +LMGTK + RF FIQERA F ++ Sbjct: 628 LLKVVI--AGEEREETADCVERLMGTKPEARFAFIQERAPFATELD 671 >gi|453419|emb|CAA54665.1| gyrB [Mycoplasma hominis ATCC 23114] Length = 648 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 266/653 (40%), Positives = 361/653 (55%), Gaps = 26/653 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A +I+ILEGLE VR RPGMYIG K LHHL E++DN++DE +AG+A I++ L Sbjct: 10 YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 N + V DNGRG+P H KS +E ILT LHAGGKFD S Y++SGGLHGVG SVVN Sbjct: 70 NNVIEVEDNGRGMPTGIHS-GTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVN 128 Query: 164 ALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDKAG 221 ALS E V V R + Q+F G IP+ PLE + GT I F PD I + Sbjct: 129 ALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNFSEVETGTTIKFHPDYTIMEKEN- 187 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F ++ ++ AYL+ +K ++ K F F GGL Y++ + + Sbjct: 188 FFFDTIIDHSKQIAYLNKGLKITVENVEKNIIKV-------FCFEGGLIDYVKELNKGKK 240 Query: 282 LISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLR 335 LI E+ + VE A+ + E I SY N I T +GGTHE G Sbjct: 241 LIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFY 300 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 AL R YAE + + I +D+ V I+S+ +P F GQTK KL + DA+ Sbjct: 301 DALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDAR 360 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGK 452 L D + YL +NP A ++E + RL K RE +RK + LPGK Sbjct: 361 IATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGK 420 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS A ELFIVEG+SAGGSAK R+RS QA+LPLRGK++N + +N++ Sbjct: 421 LADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKE 480 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ALG +++ L+Y K+IIMTDADVDGAHI +LLLTFFY+ M LIE + Sbjct: 481 IATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFV 540 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +L PPL++IT G YA+++ K++I+ + K + I R+KGLGEM QL ET Sbjct: 541 YLAQPPLYKITSGKNVEYAYNDLQKEQIMAKL--EDKRNVAIQRYKGLGEMDPEQLWETT 598 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD R +L+V+I+ LMG + + R FIQE A + +++ Sbjct: 599 MDPETRKMLQVQIDDAAIC----DTVFATLMGEEIEPRHDFIQENAKYANNID 647 >gi|255284071|ref|ZP_05348626.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469] gi|255265416|gb|EET58621.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469] Length = 639 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 251/659 (38%), Positives = 348/659 (52%), Gaps = 35/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDA+SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + IEV Sbjct: 2 AKKTYDAASISVLEGLEAVRKRPGMYIGSVSRKGLNHLVYEIVDNAVDEHLAGYCSQIEV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ +G TV DNGRG+PV+ H K ++ TTLHAGGKFDN +Y+ SGGLHGVG Sbjct: 62 YLEKDGSATVNDNGRGVPVDMHEK--GVPAERLVFTTLHAGGKFDNDSYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKI 215 SVVNALS L V V+ I +F RG+P+ LEK K GT I F PDP+I Sbjct: 120 SVVNALSTYLDVQVSLGGQIHHDRFERGVPVVELEKGLLPVTGKTKKTGTCINFLPDPEI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F A + AYL+ + + + ++ ++ P G+ +++ Sbjct: 180 FEK-TQFAAEEIKSRLHETAYLNPALTIIFEDRRGAETEHLE-----YHEPDGIIGFVKD 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGL 334 N+ + K E G TVE A + E + + +CN I EGGTH +G Sbjct: 234 LNRNKETVQDPPVYLKGELDGI---TVECAFQYVNEFHENVLGFCNNIYNAEGGTHLTGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + A T + YA ++ + D+ ++SV P F GQTKTKL + DA Sbjct: 291 KTAFTAIMNNYARELGILKEKDANFTGADIRNGMTAVVSVKHPAPRFEGQTKTKLDNQDA 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V + D Y +N K+L ++ R K + GK Sbjct: 351 AKAVAKVVGDEAVLYFDRNLETLKKVLSCAERAAKIRRTEEKAKTNLLTKQKYSFDSNGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+FIVEGDSAGGSAK ARNRS QA++P+RGKILNV A +K+ N + Sbjct: 411 LANCESRKPELCEIFIVEGDSAGGSAKMARNRSFQAIMPIRGKILNVEKASIDKVLANAE 470 Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI Sbjct: 471 IKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIY 530 Query: 569 QKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 + H+++ PPL++ +G + Y +D++ +K + K + R+KGLGEM A Sbjct: 531 EGHIYIAMPPLYKAMPARGPEE-YLYDDKALEKYRKTHKN-----FTLQRYKGLGEMDAQ 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L RVEI + T+ LMGT+ R FI E A + + Sbjct: 585 QLWETTLNPETRVLRRVEIEDARMASSVTE----MLMGTEVPPRKAFIYEHAKDAE-LD 638 >gi|195978267|ref|YP_002123511.1| DNA topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974972|gb|ACG62498.1| Topoisomerase IV subunit B ParE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 649 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 242/652 (37%), Positives = 365/652 (55%), Gaps = 34/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ N I+V+L+ Sbjct: 10 NYNDDAIQVLEGLEAVRKRPGMYIGSTDATGLHHLIWEIVDNAVDEALSGFGNEIDVTLN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G T+ D+GRG+P H T+++I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 70 KDGSATISDSGRGMPTGQH--ALGIPTVQVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 127 Query: 163 NALSDELHVTVARQNTIFSQKFSRGI--PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 NALS L V + R ++ Q+F G + ++K GTR+TF PD KIF Sbjct: 128 NALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIASAPKSKSGTRVTFMPDDKIFSTT- 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + + + A+L VK + + P EEF++ G++ ++ E++ Sbjct: 187 EFKWNTIAERLKESAFLLKTVKMTLTDLRGDD-----PVVEEFHYENGVQDFVAYLNEDK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 ++ I+ E+ VE A+ + + + S+ N + T +GG+HE+GL+ A+T Sbjct: 242 ETLTPVIYMEGQEQD----FQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 340 RGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + + YA T ++ ++ D +LS+ + E +F GQTK KL S A+ Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 VE+ + + +L++N A L+ I+ + R R+ R+ +R K GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I +V +G + + ED+ Y+K+IIMTDAD DGAHI +LLLTFFY+ M L+E H+ Sbjct: 478 INTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHV 537 Query: 573 FLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++ PPL+++++G K YA + + + +EF K + R+KGLGEM ASQL Sbjct: 538 YIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGA----TLQRYKGLGEMNASQL 593 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD + RTL+RV I+ L + ++ LMG KA R ++I++ +F Sbjct: 594 WETTMDPDTRTLIRVTIDD----LARAERRVSVLMGDKAAPRRQWIEDNVTF 641 >gi|121889|sp|P21558|GYRB_HALSQ RecName: Full=DNA gyrase subunit B gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp gi|149024|gb|AAB09605.1| DNA gyrase beta-subunit [Haloferax lucentense] gi|1899004|gb|AAB49900.1| DNA gyrase beta-subunit [Shuttle vector pMDS20] Length = 639 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 249/655 (38%), Positives = 364/655 (55%), Gaps = 26/655 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y A I++LEGLE VR RP MYIG TD + LHHL EV+DN++DE +AG+ + IE Sbjct: 2 SQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G ++V DNGRGIPV H ++ ++ LE+I+T LHAGGKFDN +Y++SGGLHGVG Sbjct: 62 VALHEDGSVSVTDNGRGIPVGTHEQY-DRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKI 215 ++VVNALS EL V V +++ +F G P ++ + GT I F PD I Sbjct: 121 VTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + A+L+ V+ S ++ E F F GG++ +++ Sbjct: 181 FET-TEFDFKTLENRLRELAFLNSGVEISLSDER-------TDESSTFLFEGGIREFVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGL 334 E ++ + ++ E +G VE A+ +E I ++ N I T EGGTH +G Sbjct: 233 LNETKTALHDDVIYYDDESEGI---EVEIAMQATDELQGSIHAFANNINTREGGTHLTGF 289 Query: 335 RVALTRGIKKYAELTQNKRA---ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + YA ++ +D+ ++SV +P+F GQTKTKL + + Sbjct: 290 KTALTRVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE+ + +NP AT ++ +E + R ++ E RK+A+ LP Sbjct: 350 VRGIVESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC +ELFIVEGDSAGGSAKQ R+R QA+LPL+GKILNV ++I N Sbjct: 410 GKLADCQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILEN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L+ A+G ++ E RY+++I+MTDADVDGAHI +LLLT Y+ M LIE Sbjct: 470 DEIRALITAIGGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+R+ + A DE + +I+EE ++ RFKGLGEM QL + Sbjct: 530 YVYAAQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPT--QVQRFKGLGEMNPDQLWD 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R L R+ + N LMG R +FI++ A+ + V Sbjct: 588 TTMNPENRVLKRITVED----AAAADRMFNILMGDAVGPRKQFIKDHANDAEWVD 638 >gi|310825640|ref|YP_003957997.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612] gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612] Length = 640 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 255/652 (39%), Positives = 372/652 (57%), Gaps = 22/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ ++Y A I++LEGLE V+ RPGMYIG T ++ LHHL EV+DN++DE +AGY I Sbjct: 6 KNEKNDYTADQIQVLEGLEAVQKRPGMYIGSTGKQGLHHLVYEVVDNSIDEALAGYCKNI 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++D N +TVVD+GRGIP + + K K+ +E+ LT LHAGGKF Y++SGGLHGV Sbjct: 66 VVTIDKNNGITVVDDGRGIPTDMNHKM-KKTGVELALTVLHAGGKFGGGGYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL V V + I+ Q F++G S LE T + F+PDP IF Sbjct: 125 GVSVVNALSSELTVEVKQNKKIYHQTFAKGKKTSELEVTGNTNRTG-TTVHFQPDPDIFD 183 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + +D L + A+L+ V + ++E KE + + GG+++Y++ Sbjct: 184 ELV-YDFDVLEHRLRELAFLNKGVSITLADERE-----AEKRKETYCYEGGIRSYIEYMN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N+ + +I + E ++E A + I SY N I T EGG+H +G + Sbjct: 238 KNKDPLYEQIAYYEKEMDD---YSLEIAFQYTAGYSENIYSYANNIYTPEGGSHLNGFKS 294 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + ++ +D+ I+S+ + +P+F GQTKTKL + + + Sbjct: 295 ALTRTINTYARKNNYIKGNDKNLTGEDVREGLTAIISIKLLDPQFEGQTKTKLGNPEVKG 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE + D +L +NP A ++E + S R +K RE RK+A+ LPGKL Sbjct: 355 IVETIVGDELSAFLEENPTIAKTVIEKTLSASRAREAAKKARELTRRKSALDTTALPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+FIVEGDSAGGSAK R+ QA+LPLRGKILNV + ++I + Sbjct: 415 ADCREKDPSMSEIFIVEGDSAGGSAKSGRDSRIQAILPLRGKILNVEKSRLDRILTADTL 474 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ A G + E RY K+IIMTDADVDGAHI +LLLTFFY+ M LIE+ +++ Sbjct: 475 KSMITAFGTGVGEDFNVEKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRGLIEEGYVY 534 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPLF++ +G Y ++E+ K+ E+ + K I R+KGLGEM A QL ET M Sbjct: 535 IAQPPLFKVARGQHVEYVYNEKALDKMFED---KDRSKYTIQRYKGLGEMDAHQLWETTM 591 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + R L RV I + LMG K R +FI+ A+ + ++ Sbjct: 592 DPSVRILNRVNIED----AAYADEVFTILMGDKVQPRKEFIERNAAKVKNLD 639 >gi|294083673|ref|YP_003550430.1| DNA topoisomerase IV subunit B [Candidatus Puniceispirillum marinum IMCC1322] gi|292663245|gb|ADE38346.1| DNA topoisomerase IV, B subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 662 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 336/656 (51%), Positives = 446/656 (67%), Gaps = 8/656 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++ DNYDAS+I +LEGLEPVR RPGMYIGGTDE+A HHL +E++DN+MDE +AG+AN Sbjct: 8 GNAASDDNYDASNIEVLEGLEPVRHRPGMYIGGTDERAYHHLAAEILDNSMDEAVAGHAN 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+ L+ L++ DNGRG+P NHPKFP+KS +E+I+TTLHAGGKF +Y SGGLH Sbjct: 68 RIDFHLESATTLSIRDNGRGMPTGNHPKFPDKSAVEVIMTTLHAGGKFSGKSYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS L V +AR ++ Q FSRG PL L + N+RGT +TF PD +I Sbjct: 128 GVGASVVNALSSALLVEIARDKKLYQQSFSRGKPLDALTEIGGAPNRRGTTVTFTPDTEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQ 274 FG+KA F + L +M +SKAYL V+ W CD +A+ +P + ++PGGL YL Sbjct: 188 FGEKAHFRPSTLYRMARSKAYLFAGVEIRWQCDPALLADNDPVPAEAVLHYPGGLADYLN 247 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 +++L+ S F E G + E+ SYCNT+ T GGTHE+G Sbjct: 248 DVTRDKALMVSTPFAEIAELDG-QKFEWAITWLGAGEDGFFHSYCNTVPTPSGGTHETGF 306 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 R A+ R ++ Y +L N++A + +DD++ + +LSVF+R+P+F GQTK +LVS DA R Sbjct: 307 RQAIVRALRNYGDLAGNRKAADLTADDVLANTGVMLSVFLRDPQFQGQTKDRLVSTDATR 366 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 E A+RD F+H+L + A LLE IER+EER RR+K++EV RK+A R+LRLPGKLA Sbjct: 367 MTEQAVRDRFEHWLSADSARANFLLEAAIERAEERKRRKKEKEVARKSATRRLRLPGKLA 426 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ N TELF+VEGDSAGGSAKQARNR QAVLPLRGKILNVASA EK+ NQ++ Sbjct: 427 DCTSNDLDLTELFLVEGDSAGGSAKQARNRKTQAVLPLRGKILNVASATVEKLSGNQELS 486 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 DL ALG R ++ +DLRY +V+IMTDADVDGAHIA+LL+T+FY+EM LIE L+L Sbjct: 487 DLALALGVRPGKDFKVDDLRYGRVVIMTDADVDGAHIAALLMTYFYREMPQLIEAGRLYL 546 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI QG K++YA D+ + +LE +GKI+ISRFKGLGEM +QLKET M+ Sbjct: 547 AQPPLYRINQGGKTLYALDDAQRDTLLET-GFDKRGKIDISRFKGLGEMPPAQLKETTMN 605 Query: 635 ANKRTLLRVEINKDLNSLKD----TQDSINKLMGTKADERFKFIQERASF-IDDVG 685 R LL+VE+ + + D T +N LMG KA+ RF +I++ A + ++ Sbjct: 606 PASRRLLKVELPQRDSIGADLRRTTDQLVNTLMGKKAELRFGYIRDHAEDALANLD 661 >gi|71903198|ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180] gi|71802293|gb|AAX71646.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180] Length = 650 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 374/652 (57%), Gaps = 24/652 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 KVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMT ADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTIADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 WETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRNFIEENAVY 645 >gi|169350467|ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552] gi|169292787|gb|EDS74920.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552] Length = 642 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 231/654 (35%), Positives = 361/654 (55%), Gaps = 34/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A ++YD S+I+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++G+ + I+ Sbjct: 2 AAKNSYDESNIQILEGLEAVRKRPGMYIGSTDSRGLHHLVWEIVDNAIDEALSGFGDNIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGV 157 V++ + + V D+GRG+P H + E+ILT LHAGGKF+ + Y+ SGGLHGV Sbjct: 62 VTICKDNSIIVSDHGRGMPTGMH--ASGRPATEVILTVLHAGGKFNEDGGYKTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L VTV R I+ Q+F G K NK GT I F PD IF Sbjct: 120 GASVVNALSTWLEVTVYRDGKIWQQRFENGGSKIGKLKVVGKTNKTGTTIHFLPDASIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ + + + A+L ++ ++ E + + GL +++ Sbjct: 180 T-TEYNFSTISERLMESAFLLKGIRIDLKDERSDKE-------VVYQYDNGLIAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + +++ I + + V+ A+ + S+ N + T +GG+HE+G R Sbjct: 232 YEKDVLNPIISI----EGINNEIEVDLAMQFTSGYQENTLSFVNLVRTSDGGSHETGFRS 287 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ALTR +YA ++ ++ +D+ I+S+ + E +F GQTK+KL + +A Sbjct: 288 ALTRTFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHLLQFEGQTKSKLGTPEA 347 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE--ERLRRRKQREVNRKTAIRKLRLP 450 + V+N + + YL +N A L++ +I+ ++ + R+ ++ K ++ L Sbjct: 348 RNVVDNIVYEKLSFYLEENKQIADVLIKKMIKAAQVRDAARKAREAARKGKGTRQEKILS 407 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I N Sbjct: 408 GKLAPAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVINTEKAAMSDILKN 467 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G + + E+D Y KVIIMTDAD DGAHI +LLLTFFY+ M LI Sbjct: 468 EEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQTLLLTFFYRYMKGLITAG 527 Query: 571 HLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL++I++ G K +YA ++ + ++ K + R+KGLGEM AS Sbjct: 528 KVYIALPPLYKISKKNGKKEEAIYAWQDDELEDAKKKIGK----GYVVQRYKGLGEMNAS 583 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ RTL++V I+ + ++ LMG K + R ++I++ F Sbjct: 584 QLWETTMNPETRTLIQVSIDD----AALVERRVSVLMGDKVEPRREWIEQNVQF 633 >gi|251796502|ref|YP_003011233.1| DNA topoisomerase IV subunit beta [Paenibacillus sp. JDR-2] gi|247544128|gb|ACT01147.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2] Length = 656 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 245/665 (36%), Positives = 357/665 (53%), Gaps = 41/665 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + NY+A I++LEGL VR RPGMYIG T LHHL E++DNA+DE +A + Sbjct: 9 AKTAAPERNYEADDIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKFC 68 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I+V+L NG +TV DNGRGIP H T +++ T LHAGGKF Y+ SGGL Sbjct: 69 TAIDVTLHKNGAVTVQDNGRGIPTGMHK--TGIPTPQVVYTILHAGGKFGGGGYKKSGGL 126 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKRG 204 HGVG SV NALS+ L V + R I +F G P++ LE N+ G Sbjct: 127 HGVGASVTNALSEWLEVEIFRDGKIHKMRFEYWVDNKGKEHVGEPVTGLEITGNT-NRTG 185 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T++TF+PD ++F + L + Q A+L+ +K D+ E + F+ Sbjct: 186 TKVTFKPDGRVFQGGTSLNYDTLAERLQEIAFLNSGLKVTIKDDRSGKE-------DIFH 238 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 + GG + ++Q ++++++ + EK VE A+ + + I S+ N+I Sbjct: 239 YEGGARQFVQYLNDDKTVLHDVVHFA-GEKDEI---EVEVALQYNDGYTETIASFVNSIP 294 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHE+G + A TR + +YA ++ ++ +DL + ++++ + E EF G Sbjct: 295 TRGGGTHETGFKTAYTRVMNEYARKAGLLKEKEKNLEGNDLREGMMSVINIKMSEVEFVG 354 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK +L S A+ V+ + D +L +NP A LL+ ++ S+ R RK RE R Sbjct: 355 QTKDQLGSASARSAVDAVVSDKMQVFLEENPQVAQMLLKKAVQASKAREAARKAREEIRS 414 Query: 442 TAIRK--LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 + L GKL ELFIVEGDSAGGSAKQ R+ +QA+LPL+GK +N Sbjct: 415 GKKKSESSNLNGKLTPAQSKDFSRNELFIVEGDSAGGSAKQGRDSKHQAILPLKGKPMNP 474 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A I N++ ++ A+G ++ E+ Y K+IIMTDAD DGAHI LLLTFF Sbjct: 475 EKAKLLDILKNEEYKAIISAIGAGVGPEFDAEECNYNKIIIMTDADTDGAHIQVLLLTFF 534 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 Y+ M LI+ +++ PPL++IT+ + YA +E Q L+EF K+ E+ Sbjct: 535 YRYMKPLIDTGRVYIAQPPLYKITRKSGKLETVRYAWTDEQLQNYLKEFGKN----FELQ 590 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET MD RTLL+V+I + ++ LMG K D R ++I Sbjct: 591 RYKGLGEMNPDQLWETTMDPETRTLLQVQIED----AAKAERRVSALMGDKVDPRKRWII 646 Query: 676 ERASF 680 E F Sbjct: 647 ENVDF 651 >gi|1052804|emb|CAA58771.1| DNA gyrase B subunit [Streptococcus pneumoniae] Length = 648 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV K + +E + T LH+GGKF Y++SGGLHGVG+S Sbjct: 70 IEPDDSITVVDDGRGIPVGIQEK-TGRPAVETVFTVLHSGGKFGGGGYKVSGGLHGVGLS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINSYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|291563505|emb|CBL42321.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SS3/4] Length = 639 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 244/659 (37%), Positives = 351/659 (53%), Gaps = 33/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A Y+A SI +LEGLE VR RPGMYIGG K L+HL E++DNA+DE +AG+ I V Sbjct: 2 AKAQYNADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNAVDEHLAGFCTEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV DNGRGIPVE H K S ++L+TLHAGGKFDN++Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVKDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNNSYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKI 215 SVVNALSD + V ++R ++ ++ +G P+ L+ + GT I F PDP I Sbjct: 120 SVVNALSDRMKVKISRDGKVYYDEYEKGHPVIELKDGLLPVIGKSKETGTEINFLPDPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F A L AYL+ + + + E E ++ P G+ Y++ Sbjct: 180 FEK-TKFKAEWLKSRLHESAYLNPNLALHYVNKRAGEE-----EMITYHEPDGIIAYVRE 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 + + ++ K R VE A + + E +CN I T EGGTH G Sbjct: 234 LNNGKDPVHEPVYF----KGSVDRIEVEVAFQFVDAFEENILGFCNNIFTQEGGTHLVGF 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + T+ I YA ++ + D +++V +P F GQTKTKL S DA Sbjct: 290 KTKFTQLINSYARELGILKEKDSNFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V D + + +N ++ + ++ R K + + GK Sbjct: 350 TKAVFTMTGDELERFFDRNLDTLKAIIACAEKSAKIRKAEEKAKTNMLSKSKFSFDSNGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+FIVEGDSAGGSAK RNR QA+LP+RGKILNV A +K+ N + Sbjct: 410 LANCESRDPSKCEIFIVEGDSAGGSAKMGRNRQFQAILPIRGKILNVEKASMDKVLANAE 469 Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ A GC + + L+Y+K+++MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 470 IKTMINAFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHIDTLLLTFLYRFMPELIY 529 Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 H+++ PPL+++ + + Y +D+ K LEE+KK+ G + R+KGLGEM A Q Sbjct: 530 DGHVYIAMPPLYKVVPKRGEERYLYDD----KALEEYKKNHAGDFTLQRYKGLGEMDADQ 585 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L ET ++ R L RVEI + + T+ LMG+ R KFI + A + + Sbjct: 586 LWETTLNPENRVLKRVEIEDARMASEVTE----LLMGSDVPPRKKFIYDHADEAE-IDA 639 >gi|291280736|ref|YP_003497570.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1] gi|290755438|dbj|BAI81814.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1] Length = 643 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 260/653 (39%), Positives = 363/653 (55%), Gaps = 19/653 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y I +L+GLEPVR RPGMYIG TD K LHHL EV+DN++DE AGY + IE+ Sbjct: 2 SQKTYTEKDIIVLKGLEPVRKRPGMYIGSTDNKGLHHLLWEVVDNSIDEATAGYCSEIEI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L + +TV DNGRGIPV HP+ STLE++LTTLHAGGKF+N Y+ SGGLHGVGI Sbjct: 62 TLHKDYSVTVKDNGRGIPVGPHPEL-KISTLEVVLTTLHAGGKFENKIYKASGGLHGVGI 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS+ L V V R ++ Q +S+G L+ K N GT I F PD IF Sbjct: 121 SVVNALSEYLEVYVKRNGNLYYQTYSKGQKQQELQILKTGLNPNDTGTTIHFLPDKTIFK 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + + Q +YL+ +K + + E P+ F GL+ K Sbjct: 181 T-TKFQPTIIEQRLQELSYLNKGLKIIFINELEEK-----PKTIVFLSEKGLEEMFSVKT 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 +N + + + I+ K+ + T + + I SY N I T E GTH G + A Sbjct: 235 KNFTYLFNPIYIEDKNKEHDLQITCIFGFLQNYYDQTIYSYVNNIPTHEHGTHVDGFKNA 294 Query: 338 LTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 L++ KY + I S+D+ I+SV + PEF GQTK KL + + + V Sbjct: 295 LSKIFNKYKNTLKLNGKYKITSEDIREGLYSIISVKVINPEFEGQTKNKLGNKEVKEIVS 354 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADC 456 N + + + Y N + + + R RK +E RK LPGKLADC Sbjct: 355 NIIVEHLEKYFDINQQAFKLWYQKTLNTVQAREAARKAKETVRRKNVFETSTLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S TELFIVEGDSAGGSAKQ+RN+ QAVLPL+GKI+NV A K+ N+++ +L Sbjct: 415 SSKNVEKTELFIVEGDSAGGSAKQSRNKEFQAVLPLKGKIINVEKAYLVKLLENEEVKNL 474 Query: 517 VQALGCRTRS--QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 + A+G ++ ++LRY K+IIMTDADVDGAHI +LLLTFFY+ + ++I Q LF+ Sbjct: 475 ITAIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITTLLLTFFYKYLPEIITQGKLFI 534 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI--LEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL++I K Y D+ ++ + + + ++I RFKGLGEM QL ET Sbjct: 535 AQPPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQENVQIQRFKGLGEMNPEQLWETT 594 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 M+ N R L++VEI+ + + + LMG ER +FI+ A++ ++ Sbjct: 595 MNPNTRNLIQVEISD----FEAANNIFSILMGKNIKERKEFIENYATYA-NID 642 >gi|291523173|emb|CBK81466.1| DNA topoisomerase IV subunit B [Coprococcus catus GD/7] Length = 640 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 251/660 (38%), Positives = 359/660 (54%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +++Y+A SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AG+ + I Sbjct: 2 APTNSYNADSISVLEGLEAVRKRPGMYIGSVSRKGLNHLVYEIVDNSVDEHLAGFCSEIH 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G TV DNGRGIPV H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLNKDGSATVSDNGRGIPVGMHKK--GISAERLVFTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214 SVVNALS+ L VTV+R+ + ++ RG+P PLEK K GT I+F PD + Sbjct: 120 SSVVNALSEWLDVTVSREGCTYHDRYERGVPTIPLEKGLLPVIGRTRKTGTTISFLPDKE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + AYL+ + + + E E+E ++ P GL +++ Sbjct: 180 IFEKTW-FKEDEIKSRLHETAYLNPELTIIYEDKRVTPE-----EQEVYHEPDGLAGFIR 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 N+ + + K E +G TVE A + E + + +CN I EGGTH +G Sbjct: 234 DLNRNKEALHDIVC-FKGESEGI---TVEGAFQYVNEFHENVLGFCNNIYNAEGGTHITG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + A T + YA ++ + D+ ++S+ +P F GQTKTKL + D Sbjct: 290 FKSAFTSIMNAYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDPRFEGQTKTKLDNQD 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A R + + Y +N +L + ++ R K R G Sbjct: 350 AARATGKIVNEEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKARTNLLTKQKFSFDSNG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +KI N Sbjct: 410 KLANCESRNADICEIFIVEGDSAGGSAKTARNRHFQAILPIRGKILNVEKASIDKILANA 469 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ + GC + + LRY K+IIM DADVDGAHI++LLLT FY+ M +LI Sbjct: 470 EIKTMINSFGCGFSEGYGNDFDISKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELI 529 Query: 568 EQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + H+++ PPL++ ++G + Y +D+ K LE+++K KG + R+KGLGEM A Sbjct: 530 YEGHVYIAMPPLYKAMPSKGREE-YLYDD----KALEQYRKTHKGNFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +QL ET ++ R L +VEI + D LMG R FI + A + + Sbjct: 585 AQLWETTLNPETRILKKVEIED----ARIASDITGLLMGPDVPPRKAFIYKHAHDAE-LD 639 >gi|157964294|ref|YP_001499118.1| DNA topoisomerase IV subunit B [Rickettsia massiliae MTU5] gi|157844070|gb|ABV84571.1| DNA topoisomerase IV, B subunit [Rickettsia massiliae MTU5] Length = 662 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 330/660 (50%), Positives = 446/660 (67%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ +NY A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP+++HPKFP+KS LE+ILTTLH+GGKF N+ Y + Sbjct: 68 GFASIITIKMHHDHSITIFDNGRGIPIDHHPKFPDKSALEVILTTLHSGGKFSNNVYHTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L +E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYELARSKAYLYRGVAIEWVCEVEVP--SDIPKKALISFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ +L+ IF G + + + I SYCNT+ T +GGTH Sbjct: 246 YLSSKITLDNLVIPGIFAGNIGSTPDRIKLEWAICWQNNDSSAFIQSYCNTVPTPQGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ A+ RG+K Y E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSN 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + VEN ++D FDH+L ++ AT LLE VI +E R+ ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPVENIIKDHFDHFLSRDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 486 QAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA DEE K K+ ++ K K KIE+ RFKGLGEM+ +QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYAGDEEEKAKLTDKLLKASKAKIEVGRFKGLGEMMPAQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I ++ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELD 661 >gi|88854504|ref|ZP_01129171.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1] gi|88816312|gb|EAR26167.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1] Length = 664 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 248/673 (36%), Positives = 368/673 (54%), Gaps = 22/673 (3%) Query: 23 LKKSGEIPDSPAFANQS-ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 ++P+S +N A+D+Y A I+ILEGLE VR RPGMYIG T + LHHL EV Sbjct: 3 STPENDVPESQIISNGHVAADSYGADQIQILEGLEAVRKRPGMYIGSTGPRGLHHLVYEV 62 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN++DE +AGY + I V + +G + V DNGRGIPV+ + + KST+E+++T LHAGG Sbjct: 63 VDNSVDEALAGYCDTINVWIRKDGSVRVRDNGRGIPVDLN-QQEQKSTVEVVMTMLHAGG 121 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF Y +SGGLHGVGISVVNALS E+ V RQ ++ F+ G+P+ PLE+ + Sbjct: 122 KFGGGGYAVSGGLHGVGISVVNALSAEIDTEVRRQGHVWRMSFANGVPVGPLEQ-GESTT 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 + GT+ TF P + F FD L Q A+L+ ++ + +++ + E Sbjct: 181 ETGTQQTFWPSKETFET-VEFDFETLRARFQQMAFLNKGLRITITDERDEED-----VVE 234 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYC 319 + + GL Y++ + + E + R ++E A+ W + +Y Sbjct: 235 SYMYERGLVDYVEYLNKAKKNELIHPDVIAFESEDTEKRISLEVAMQWTAGYTESVHTYA 294 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 NTI T EGGTHE G R ALT + +YA ++ ++ DD+ ++S+ + EP Sbjct: 295 NTINTHEGGTHEEGFRAALTSLVNRYAREKNIIKEKDENLSGDDVREGLTAVISIKLGEP 354 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + +A+ V+ + +NP +A ++ I+ S+ RL RK RE Sbjct: 355 QFEGQTKTKLGNTEAKAFVQRIAGQQLGDWFDRNPTQARDVIRKAIQASQARLAARKARE 414 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 R+ + +PGKL DCS +E+FIVEGDSAGGSA Q RN QA+LPLRGKI Sbjct: 415 QTRRKGLLESSGMPGKLRDCSSKDPSLSEIFIVEGDSAGGSAVQGRNPEFQAILPLRGKI 474 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++ N ++ ++ A G + E RY K+++M DADVDG HI +LLL Sbjct: 475 LNVEKARLDRALGNAEVQAMITAFGAGVGEDFDPEKARYHKIVLMADADVDGQHITTLLL 534 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE-- 613 T ++ M LI+ +++L PPL+R+ + Y + + + + E GK + Sbjct: 535 TLLFRYMRPLIDLGYVYLAQPPLYRLKWSNAQHEYVYSDTERDALTEAGLSAGKRMPKDN 594 Query: 614 -ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 I R+KGLGEM +L ET MD RTLL+V ++ + + LMG + R Sbjct: 595 GIQRYKGLGEMDYKELWETTMDPADRTLLQVTLDD----AAAADEIFSTLMGEDVESRRN 650 Query: 673 FIQERASFIDDVG 685 FIQ A + + Sbjct: 651 FIQRNAKDVRFLD 663 >gi|118586892|ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163] gi|118432724|gb|EAV39456.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 674 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL E++DNA+DE++AGY + Sbjct: 9 TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V + + +TVVD+GRG+PV H K T E+ILT LHAGGKF Y+ +GGLHG Sbjct: 69 IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS+ L V + R + + F G P+ L+K K +++ GT ITF+PDP I Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + + A+L +K ++ EE+ + G+K ++ Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKEFVDY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E +++I E++G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 241 LNEGKAVIGKV-MYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 +VA T+ YA ++ + D+ ++++ + E +F GQTK KL ++ Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448 +A+ V + + + YL++N A L+ + E R RK R+ +R +K + Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEF 416 Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL A ELF+VEGDSAGGSAKQ R+R QAVLPLRGK+LN AG E++ Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G + + +D Y KVIIMTDAD DGAHI +LLLTFFY+ M L+ Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536 Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++T + K +A E L E K I+R+KGLGEM Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682 A+ L ET MD ++RTL+RV+I + + LMG + R K+I++ +F +D Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648 Query: 683 DVGT 686 + G+ Sbjct: 649 EAGS 652 >gi|225028802|ref|ZP_03717994.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353] gi|224953886|gb|EEG35095.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353] Length = 638 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 247/652 (37%), Positives = 353/652 (54%), Gaps = 29/652 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A+SI +LEGLE VR RPGMYIG + L+HL E++DNA+DE +AGY + I+V LD Sbjct: 6 TYNANSIAVLEGLEAVRKRPGMYIGSVSTRGLNHLIYEIVDNAVDEHLAGYCSNIQVILD 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G T+ DNGRGIP + K +E++ T LHAGGKF Y+ISGGLHGVG SVV Sbjct: 66 EDGTATIQDNGRGIPTGINSK-TGIPAVEMVFTMLHAGGKFGTGGYKISGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L V V + ++ Q + +G ++PLE + GT +TF PD +IF Sbjct: 125 NALSVWLEVKVRSEGKVYQQMYEKGKAVAPLEVIGTCRKGDTGTTVTFLPDGEIFDKTY- 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F A + AYL+ + + + E E F+ GLK Y++ + + Sbjct: 184 FKAESIKSRLHETAYLNPGLSITFENRRPGEE-----ETVLFHEEEGLKAYVRDLNKGKP 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ KK VE A + +E I +CN I T EGGTH +G + T Sbjct: 239 AVGEIVYF----KKKVDDIEVEAAFQYVDEFQETIMGFCNNICTMEGGTHITGFKTKFTS 294 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +YA ++ + D+ +LS+ ++P F GQTKTKL + DA + V Sbjct: 295 VMNQYARELGILKEKDKNFTGADVRNGMTAVLSIKHKDPRFEGQTKTKLDNPDAGKAVSE 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 L + Y +N E K++ + ++ R + R + + GKLA+C Sbjct: 355 VLGEELPLYYDRNLEELKKVIACAEKSAKIRKAEERARTNLISKSKFSIDTNGKLANCES 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N +I ++ Sbjct: 415 RNPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASMDKVLANAEIKTMIH 474 Query: 519 ALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 GC + + L+Y K++IMTDADVDGAHIA+LLLTFFY+ M DLI Q H++L Sbjct: 475 TFGCGFSEGYGNDFDISKLKYNKIVIMTDADVDGAHIATLLLTFFYRFMPDLIHQGHVYL 534 Query: 575 ISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 +PPL++ I + K Y +D+ + LE ++K+ K + RFKGLGEM A QL ET + Sbjct: 535 ATPPLYKAIPKRGKEEYLYDD----RALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTL 590 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + R L +VEI + + + LMG++ R FI A D + Sbjct: 591 NPETRILKQVEIEDG----RLASEVTSMLMGSEVPPRRAFIHAHAQDAD-LD 637 >gi|256619114|ref|ZP_05475960.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200] gi|256959030|ref|ZP_05563201.1| gram positive topoisomerase IV [Enterococcus faecalis DS5] gi|256961877|ref|ZP_05566048.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96] gi|256965075|ref|ZP_05569246.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704] gi|257079061|ref|ZP_05573422.1| gram positive topoisomerase IV [Enterococcus faecalis JH1] gi|257089935|ref|ZP_05584296.1| topoisomerase IV subunit B [Enterococcus faecalis CH188] gi|257416144|ref|ZP_05593138.1| gram positive topoisomerase IV [Enterococcus faecalis AR01/DG] gi|257419346|ref|ZP_05596340.1| topoisomerase IV [Enterococcus faecalis T11] gi|256598641|gb|EEU17817.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200] gi|256949526|gb|EEU66158.1| gram positive topoisomerase IV [Enterococcus faecalis DS5] gi|256952373|gb|EEU69005.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96] gi|256955571|gb|EEU72203.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704] gi|256987091|gb|EEU74393.1| gram positive topoisomerase IV [Enterococcus faecalis JH1] gi|256998747|gb|EEU85267.1| topoisomerase IV subunit B [Enterococcus faecalis CH188] gi|257157972|gb|EEU87932.1| gram positive topoisomerase IV [Enterococcus faecalis ARO1/DG] gi|257161174|gb|EEU91134.1| topoisomerase IV [Enterococcus faecalis T11] Length = 663 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%) Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIG TD + LHHL E++DNA+DE ++GY N I V++ + + V D+GRG+P Sbjct: 2 RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + R Sbjct: 62 GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + ++F G P+ L+K K + + GT +TF PD IF F L + + A+L Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 VK + ++ P++E F++ G+K ++ E + ++ + K+G Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232 Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 VE A + + E S+ N + T +GGTHE G++ ++T+ +YA ++ Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289 Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 ++ D +LS+ + E +F GQTK KL + A+ V+N + + YL +N Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349 Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469 + L+ I+ E R RK RE +R RK L GKL EL++V Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G ++ Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587 ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++++G K Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529 Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 SV YA + +++++ K + R+KGLGEM A QL ET MD RTL+RV I Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 + + + LMG K + R K+I++ F Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616 >gi|295396857|ref|ZP_06806985.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC 11563] gi|294974883|gb|EFG50582.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC 11563] Length = 707 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 245/663 (36%), Positives = 368/663 (55%), Gaps = 33/663 (4%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + D NQ+ YD SSI++LEGLE VR RPGMYIG TD + LHHL E++DN++DE Sbjct: 9 VNDLAKPTNQNNKSTYDESSIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSIDE 68 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +GYA+ I V+L +G V DNGRG+P+ H K T+E+ILT LHAGGKF S Y Sbjct: 69 AFSGYADHITVTLAKDGSAIVTDNGRGMPIGKH--TSGKPTVEVILTVLHAGGKFGGSGY 126 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 + SGGLHGVG SVVNALS + TV R + Q+F+ G + K GT+I Sbjct: 127 KTSGGLHGVGSSVVNALSSKFIATVHRDGKEYYQEFTNGGKPGKPKTKAFKSKNTGTKIQ 186 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD +IFG+ FD + + + + A+L ++ + + E E F++ G Sbjct: 187 FYPDAEIFGNI-KFDPSTIREHLRESAFLLKDLRIDFIDEINETE-------ETFHYAEG 238 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 +K ++ E++ ++ +F E + +E A + + + S+ N + T +G Sbjct: 239 IKAFVDYLNEDKDVLHDVVFFQGVE----NGIEIELAFQYNDGYSETVLSFVNNVRTADG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQT 383 GTHESG+R LT+ +YA + ++ D+ +LS+ + E +F GQT Sbjct: 295 GTHESGMRTGLTKSFNEYARKVDLLKTKEKNLEGSDVREGYTAVLSLRVPEEILQFEGQT 354 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K+KL + A+ + + + YL++N A L+ ++ E R RK RE +R Sbjct: 355 KSKLGTPQARSASDKIVSENLAVYLIENGETAQMLVRKALKAREARDAARKAREASRGAK 414 Query: 444 IRKLRL--PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 ++ + GKL A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN Sbjct: 415 GKRKEVLLSGKLTPAQGRNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEK 474 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A + I N+++ ++ +G +++ ED Y+KVIIMTDAD DGAHI LLLTFF++ Sbjct: 475 ASIQDILKNEELNTIIYTIGAGVGAEFEVEDANYDKVIIMTDADTDGAHIQVLLLTFFFR 534 Query: 562 EMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M L+E ++L PPL+++++G + YA ++ + + ++ K + R+ Sbjct: 535 YMKPLVEAGKVYLAMPPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGK----GYILQRY 590 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM A QL ET MD RTL+RV I+ L + ++ LMG K + R K+I++ Sbjct: 591 KGLGEMNADQLWETTMDPETRTLVRVTIDD----LSLAEKRVSVLMGNKVEPRRKWIEDN 646 Query: 678 ASF 680 +F Sbjct: 647 VAF 649 >gi|169825626|ref|YP_001695784.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41] gi|168990114|gb|ACA37654.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41] Length = 644 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 376/648 (58%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+ I+V++ Sbjct: 14 QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIQVTI 73 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++ V DNGRGIPV K K +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 74 EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS E V V R+ I KF RG + L+ ++ GT F+ DP+IF + Sbjct: 133 VNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIFKETTV 191 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ +K + ++E E+ +++ GG+++Y++ +++ Sbjct: 192 YEYDILAHRIRELAYLNRGIKITIADEREGEERSTT-----YHYEGGIRSYVEHLNQSKE 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 I I EK G +VE A+ + S+ N I T EGGTHESG + ALTR Sbjct: 247 PIHDPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+SV +P+F GQTKTKL + + + + Sbjct: 303 VINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNS 362 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 D F+ ++++NP A K++E ++ ++ + RK A+ LPGKLADCS Sbjct: 363 LFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK R+R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G ++ E RY K+IIMTDADVDGAHI +LLLTFF++ + LIE ++++ P Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG Y +D+E ++ILE K K + R+KGLGEM A QL +T MD Sbjct: 543 PLYQVKQGKHVEYCYDDETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWDTTMDPEH 600 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+VE++ + + +LMG + + R +FI+E A + ++ Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643 >gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 722 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 236/668 (35%), Positives = 374/668 (55%), Gaps = 23/668 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 S A + + Y A+++++LE L+ VR RPGMYIG T + LHHL E++DNA+ Sbjct: 65 ASTAASDAMQEKRVAGEYTAANVQVLEALDGVRKRPGMYIGSTGPRGLHHLVYEILDNAV 124 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN- 145 DE AGYA I V L + ++V DNGRGIP + HP+ KS +E +LT +HAGGKF Sbjct: 125 DEAQAGYATEINVVLHDDNSVSVTDNGRGIPTDIHPQ-TKKSCVETVLTLMHAGGKFGGS 183 Query: 146 -STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRN 201 S+Y ++GGLHGVG+SVVNALS+ L VTV R + Q +SRG PL+ ++ + Sbjct: 184 TSSYSVAGGLHGVGLSVVNALSEALEVTVCRDGKEYRQHYSRGKPLTMLSSTTLPDESSS 243 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 ++G+ I F PD +IF FD + + + A+L+ + + + E+ + Sbjct: 244 RQGSCIRFWPDKEIFTTTIEFDFSTISSRIRELAFLNPELTITLTKE----EQDAQVQHN 299 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321 E+ + GGL Y+ ++ + I K +++W + + Y N+ Sbjct: 300 EYCYAGGLVEYVAWLNTDKKPLHDPIAFRKELDGIIVDVSLQWCS--DSYSDTVLGYANS 357 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T +GGTH GL+ +LTR I +A+ ++ + IS+ + + I+SV + PEF Sbjct: 358 IRTIDGGTHIEGLKTSLTRTINNFAKKSKIMKDKDISLSGEHVREGMTCIISVKVPNPEF 417 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438 GQTKT+L + + +R VE ++++ YL +P +L + +R + V Sbjct: 418 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 477 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 K+ ++ LPGKLADC+ + E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN Sbjct: 478 RTKSVLKSSSLPGKLADCASSNPAECEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 537 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557 + + N++I +L+ LG + + +++ LRY K++I+TDADVDGAHI +LLLT Sbjct: 538 IERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 597 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ L ++ +++ PPL+++ +G + Y +DE + ++ F + RF Sbjct: 598 FFFRYQRALFDEGCIYVGVPPLYKVERGKQVHYCYDEADLKDLVNTFPTN--ASYNTQRF 655 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM+ QL ET MD +R L ++ + + + + LMG + + R + IQ+ Sbjct: 656 KGLGEMMPLQLWETTMDPERRLLKQLTVEDAV----EANVVFSSLMGARVEYRKELIQKA 711 Query: 678 ASFIDDVG 685 AS + ++ Sbjct: 712 ASIV-NLD 718 >gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] Length = 729 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 249/690 (36%), Positives = 389/690 (56%), Gaps = 27/690 (3%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 F +Q ++ S + A + S Y + I++LEGL+PVR RPGMYIG Sbjct: 53 FQFTNVLNQRLIQRNAVSSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 112 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T + LHHL E++DNA+DE AG+A+ ++V L +G ++VVDNGRGIP + HP KS Sbjct: 113 TGPRGLHHLVYEILDNAIDEAQAGFASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 171 Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 +LE +LT LHAGGKF ++ Y +SGGLHGVG+SVVNALS+ L VTV R Q +SR Sbjct: 172 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEHKQNYSR 231 Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 G P++ L + + +GT I F PD ++F FD + + A+L+ +V Sbjct: 232 GKPITTLTCRVLTLESERTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTI 291 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + + EK + E+YF GGL Y+ +++ I + ++ + TV+ Sbjct: 292 SLKKEDDDPEKN---QYSEYYFAGGLTEYVSWLNTDKNPIHDVLGF----RREINGATVD 344 Query: 304 WAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 A+ WC + + Y N+I T +GGTH G++ +LTR + A+ ++ ++ IS+ Sbjct: 345 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNALAKKSKTVKEKDISLSG 404 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 + + I+SV I PEF GQTKT+L + + ++ V+ ++++ +L +P ++ Sbjct: 405 EHVREGLTCIVSVKIPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDVLESIV 464 Query: 420 EWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + +R + V K+ ++ LPGKLADCS +E+FIVEGDSAGGSA Sbjct: 465 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEASEIFIVEGDSAGGSA 524 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEK 537 KQ R+R QA+LPLRGKILN+ + N++I +L+ LG + +++E+LRY K Sbjct: 525 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 584 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +II+TDADVDGAHI +LLLTFF++ L + +++ PPLF++ +G + Y +D+ Sbjct: 585 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKHAHYCYDDADL 644 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +KI F + I RFKGLGEM+ QL ET M+ R L ++ ++ + + Sbjct: 645 KKITSNFPAN--ASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDD----IAEANM 698 Query: 658 SINKLMGTKADERFKFIQERAS--FIDDVG 685 + + LMG + D R + I+ A+ + + Sbjct: 699 TFSSLMGARVDVRKELIKNAATRINLQRLD 728 >gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius] Length = 611 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 234/626 (37%), Positives = 360/626 (57%), Gaps = 20/626 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T E+ LHHL E++DN++DE +AGYA+ IEV ++ + ++ V DNGRGIPV+ K Sbjct: 1 MYIGSTSERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQEK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 + +E+ILT LHAGGKF Y++SGGLHGVG SVVNALS+ L V V R I Q Sbjct: 61 M-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSETLEVYVHRDGRIHHQA 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 + +G+P L++ ++ GT I F+ D IF + ++ L K + A+L+ ++ Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + +++ ++ +++ GG+K+Y++ EN+ + E + VE Sbjct: 179 TLTDERDEE----NVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDI---EVE 231 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360 A+ + + +Y N I T EGGTHE G + ALTR + Y ++ + + Sbjct: 232 IALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGE 291 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D ++S+ +P+F GQTKTKL + + ++ V+ + F+ +L ++P A ++E Sbjct: 292 DTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVE 351 Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I S R+ +K RE RK+A+ LPGKLADCS +E+F+VEGDSAGGS K Sbjct: 352 KGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTK 411 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 R+ QA+LPLRGKILNV A +KI NN +I +V A G ++ RY K++ Sbjct: 412 SGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIV 471 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHI +LLLTFFY+ M LIE ++++ PPL+++TQG + Y ++ K Sbjct: 472 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 531 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + E+ + K I+R+KGLGEM A QL ET M+ R +L+V ++ + + + Sbjct: 532 LKEKL--NPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAI----EADQTF 585 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI++ A + ++ Sbjct: 586 EMLMGDVVENRRQFIEDNAVYA-NLD 610 >gi|73916278|gb|AAZ93007.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916280|gb|AAZ93008.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916282|gb|AAZ93009.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916284|gb|AAZ93010.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 375/648 (57%), Gaps = 22/648 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHGVG S Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L V V + I Q++ RG ++ LE +K GT + F PDPKIF + Sbjct: 129 VVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTPDPKIFTETT 187 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD +L K Q A+L+ ++ + ++ E + + +++ GG+ +Y++ EN+ Sbjct: 188 IFDFDKLNKRIQELAFLNRGLQISITDKRQGLE-----QTKHYHYEGGIASYVEYINENK 242 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +I E TVE A+ + E S+ N I T EGGTHE G R ALT Sbjct: 243 DVIFDTPIYTDGEMDDI---TVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALT 299 Query: 340 RGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 300 RVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITN 359 Query: 398 NALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + F +L++NP A +++E ++ +R + +K+ + LPGKLADC Sbjct: 360 RLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S N TELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I L Sbjct: 420 SSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G +++ RY+K+++MTDADVDGAHI +LLLT Y+ M ++E ++++ Sbjct: 480 FTAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQ 539 Query: 577 PPLFRITQGTKSV-YAHDEEHKQKILEEFKK---HGKGKIEISRFKGLGEMLASQLKETA 632 PP++ + G++ Y ++ L+E G+ K I R+KGLGEM QL+ET Sbjct: 540 PPIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLRETT 599 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R + RV ++ + + LMG + + R +FI+E A + Sbjct: 600 MDPEHRLMARVSVDD----AAEADKIFDMLMGDRVEPRREFIEENAVY 643 >gi|268319492|ref|YP_003293148.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785] gi|262397867|emb|CAX66881.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785] Length = 661 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A AN++ S +YD SSI+IL GLE VR RPGMYIG TD L+HL E++DN++DE +AGY Sbjct: 11 AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 69 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGG Sbjct: 70 GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 127 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 128 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 187 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF ++ + + + A+L VK + ++E +EF + G+K++ Sbjct: 188 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 240 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331 + E++ + ++F ++ G VE++ + + E S+ N + T +GG+HE Sbjct: 241 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 296 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387 +G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 297 AGARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 356 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445 + A+ V++ + + +YL++N A L++ + + R +K R+ +R + Sbjct: 357 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 416 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 K L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 417 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 476 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M Sbjct: 477 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 536 Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 ++E +++ PPL+++ +G K YA +E + ++ K + RFKGLG Sbjct: 537 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 592 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 593 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647 >gi|116491056|ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1] gi|116091781|gb|ABJ56935.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1] Length = 674 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL E++DNA+DE++AGY + Sbjct: 9 TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V + + +TVVD+GRG+PV H K T E+ILT LHAGGKF Y+ +GGLHG Sbjct: 69 IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS+ L V + R + + F G P+ L+K K +++ GT ITF+PDP I Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + + A+L +K ++ EE+ + G+K ++ Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKEFVDY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E +++I E++G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 241 LNEGKAVIGKV-IYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 +VA T+ YA ++ + D+ ++++ + E +F GQTK KL ++ Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448 +A+ V + + + YL++N A L+ + E R RK R+ +R +K + Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKRKEF 416 Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL A ELF+VEGDSAGGSAKQ R+R QAVLPLRGK+LN AG E++ Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G + + +D Y KVIIMTDAD DGAHI +LLLTFFY+ M L+ Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536 Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++T + K +A E L E K I+R+KGLGEM Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682 A+ L ET MD ++RTL+RV+I + + LMG + R K+I++ +F +D Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648 Query: 683 DVGT 686 + G+ Sbjct: 649 EAGS 652 >gi|25026562|ref|NP_736616.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314] gi|23491841|dbj|BAC16816.1| putative DNA gyrase subunit B [Corynebacterium efficiens YS-314] Length = 687 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 258/697 (37%), Positives = 373/697 (53%), Gaps = 63/697 (9%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDASSI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGYA+ ++ Sbjct: 3 NTEHNYDASSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEVVDNSVDEAMAGYADRVD 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + V+DNGRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVG Sbjct: 63 VTLLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + + + + Q F+ IP +E GT I F PD +IF Sbjct: 121 ISVVNALSTRVEAHIKKDGKHWYQNFNNSIPEDLVE--GANARGTGTSIRFWPDAEIFET 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE---------------- 262 FD + + Q A+L+ + + ++ E+ + E Sbjct: 179 T-DFDFDTISRRLQEMAFLNKGLTMTLTDNRASDEELELEALAEQGDTAVELSLDQIDAD 237 Query: 263 -------------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 F++P GL+ Y+ ++ I I + + + Sbjct: 238 GETQLVDAEVTDAPKKPKKREKKKIFHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA--- 294 Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 VE A+ W + ++ NTI T EGGTHE G R ALT + +YA + ++ Sbjct: 295 AEHEVEIAMQWNSSYKESVHTFANTINTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKE 354 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 ++ DD ++SV + EP+F GQTKTKL + + + V+ + H+L NP E Sbjct: 355 ANLTGDDCREGLSAVISVRVSEPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAE 414 Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A ++ + ++ RL RK R+ V RK+A LPGKLADC +EL+IVEGDS Sbjct: 415 AKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDS 474 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ L Sbjct: 475 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNSEVQAIITALGTGIHDEFDINKL 534 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAH 592 RY K+++M DADVDG HIA+LLLT ++ M DLI + H++L PPL+++ + +A+ Sbjct: 535 RYHKIVLMADADVDGQHIATLLLTLLFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFAY 594 Query: 593 DEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 +E + + LEE G+ KI I R+KGLGEM ++L ET MD + R L RV D Sbjct: 595 SDEERDQQLEEGLAAGR-KINKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRV----D 649 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L + + + LMG R FI A + + Sbjct: 650 LADAQRADELFSILMGDDVVARRSFITRNAKDVRFLD 686 >gi|21309845|gb|AAM46064.1|AF263924_3 DNA gyrase beta subunit [Peanut witches'-broom phytoplasma] Length = 648 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 257/661 (38%), Positives = 360/661 (54%), Gaps = 28/661 (4%) Query: 33 PAFANQSASD--NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ + Y ASSI ILEGLE VR +PGMYI K +HL E+IDN++DE + Sbjct: 2 SKNDKKNKENLGEYSASSIEILEGLEAVRKKPGMYIDSVTMKGAYHLIWEIIDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----S 146 AGYA I + + + ++V DNGRGIPV+ HPK KS +E ILTTLHAGGKF N Sbjct: 62 AGYATEIILKIFPDNVVSVSDNGRGIPVDIHPK-TKKSAVETILTTLHAGGKFKNAPNSK 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y SGG HGVG SVVNALS V + I+ QK+ +G+P + L+ RGT Sbjct: 121 NYSYSGGQHGVGASVVNALSTWFTVEICLNGKIYYQKYEKGVPTTSLQIIGNTNK-RGTN 179 Query: 207 ITFRPDPKIFGDKAGFDA--ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 I F PD IF D L K Q A+L+ VK + P+ FY Sbjct: 180 IKFLPDETIFQDIKNTPYSLDVLKKRVQQLAFLNKNVKLIIEDLR-----LEPPQIINFY 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 GG++ YLQ EN+ +++ + +E +E A + E I S+ N I Sbjct: 235 SKGGIQEYLQYLNENKKVLNQPFYQESSENN----IFLEIAFQYNENYISNIYSFVNNIP 290 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQ 382 T EGGTHE G ++AL R + KYA+ K+ +S I +D + I+++ +P F GQ Sbjct: 291 THEGGTHEEGFKMALNRILSKYAKDKNLLKKDLSFIGEDTLEGITAIIALKHYDPLFEGQ 350 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRK 441 TK +L + D ++ V + YL++NP EA K+++ + ++ + +K Sbjct: 351 TKARLGNYDMRQFVSKHFGIALESYLLENPQEAKKIIDKCLLAAKARVAAKKAREITRKK 410 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L KLADC EL+IVEGDSAGGSAKQ R+ S QA+LPLRGKI+NV Sbjct: 411 SPLDTLSFASKLADCRTKDPSLAELYIVEGDSAGGSAKQGRDSSFQAILPLRGKIINVEK 470 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A KI N +I+ L+Q+ G ++ RY K+IIMTDADVDGAHI +LLLTFF++ Sbjct: 471 ARLNKILVNNEIISLIQSFGTGFDKEFNISKARYHKIIIMTDADVDGAHIRTLLLTFFFR 530 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 + LIE +++ PPL+++ K Y + E+ + + K+ KI + R+KGLG Sbjct: 531 QFRPLIENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFMSR--KNNSQKIVVQRYKGLG 588 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM A QL ET MD RTLL+V++ + + LMG + R FIQE A++ Sbjct: 589 EMNAEQLWETTMDPATRTLLQVKLEDAV----EADRIFTMLMGEEVSNRKIFIQENATYA 644 Query: 682 D 682 D Sbjct: 645 D 645 >gi|290890537|ref|ZP_06553612.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429] gi|290479933|gb|EFD88582.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429] Length = 674 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 248/664 (37%), Positives = 371/664 (55%), Gaps = 34/664 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +Y+ S I+ILEGLE VR+RPGMYIG TD + LHHL E++DNA+DE++AGY + Sbjct: 9 TKKKEISYNESDIKILEGLEAVRVRPGMYIGSTDTRGLHHLVWEIVDNAVDEILAGYGDS 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V + + +TVVD+GRG+PV H K T E+ILT LHAGGKF Y+ +GGLHG Sbjct: 69 IKVIIHQDNSITVVDHGRGMPVGMH--ASGKPTPEVILTVLHAGGKFGQGGYKTAGGLHG 126 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS+ L V + R + + F G P+ L+K K +++ GT ITF+PDP I Sbjct: 127 VGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDPTI 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + + A+L +K ++ EE+ + G+K ++ Sbjct: 187 FSTTV-YKFQTIADRLRESAFLLKGIKITLIDER-----PDPQIIEEYQYKDGIKKFVDY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 E +++I E++G VE A + + E S+ N + T +GGTHE+G+ Sbjct: 241 LNEGKAVIGKV-MYFDGEQQGI---EVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGM 296 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 +VA T+ YA ++ + D+ ++++ + E +F GQTK KL ++ Sbjct: 297 KVAWTKAFNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTI 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR-- 448 +A+ V + + + YL++N A L+ + E R RK R+ +R +K + Sbjct: 357 EARSAVGSVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEF 416 Query: 449 -LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKL A ELF+VEGDSAGGSAKQ R+R QAVLPLRGK+LN AG E++ Sbjct: 417 LLSGKLTPAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEEL 476 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I ++ +G + + +D Y KVIIMTDAD DGAHI +LLLTFFY+ M L+ Sbjct: 477 LKNEEISTMIYTIGAGVGTDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLV 536 Query: 568 EQKHLFLISPPLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 E +++ PPL+++T + K +A E L E K I+R+KGLGEM Sbjct: 537 EAGRVYIALPPLYKVTSGAKKNKKEEFAWTNEE----LAELTKKAARGYTITRYKGLGEM 592 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-ID 682 A+ L ET MD ++RTL+RV+I + + LMG + R K+I++ +F +D Sbjct: 593 DANLLWETTMDPDQRTLIRVKIED----AALAEKRVTILMGDQVAPRRKWIEDNVAFSLD 648 Query: 683 DVGT 686 + G+ Sbjct: 649 EAGS 652 >gi|296284083|ref|ZP_06862081.1| DNA topoisomerase IV subunit B [Citromicrobium bathyomarinum JL354] Length = 662 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 347/653 (53%), Positives = 456/653 (69%), Gaps = 10/653 (1%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 ++S +YD+SSI +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A Sbjct: 8 GTPTSSGDYDSSSIEVLEGLEPVRRRPGMYIGGTDDRALHHLAAEVLDNSMDEAVAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 IEV L+ LT+ DNGRG+P++ HPKFP KSTLE+IL+TLH+GGKF Y SGGLH Sbjct: 68 RIEVKLEEGNRLTIADNGRGMPIDEHPKFPGKSTLEVILSTLHSGGKFSGKAYATSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ V VAR T+++Q+FS+G L P+E N+RGT ++F PDP+I Sbjct: 128 GVGVSVVNALSEHTRVEVARDKTLYAQEFSKGQTLGPIETVGAAPNRRGTTVSFTPDPEI 187 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG F A RL K+ +SKAYL V+ W C +A +PE+E F FPGGL +L Sbjct: 188 FGP-RQFSAKRLFKLARSKAYLFAGVEIRWKCAPSLATDD-VPEEETFKFPGGLADHLTQ 245 Query: 276 KLENRSLISSEIFTGKTE---KKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHE 331 ++ R ++++ F G + G G VEWAIAW + + YCNT+ T +GGTHE Sbjct: 246 RVAGRECVTAQPFAGSQDFPSVDGVSNGRVEWAIAWPLFSDAATSWYCNTVPTPDGGTHE 305 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 GLR ALT+G++ + EL K+A I +DD+M A +LSVFIR+P+F QTK +L S + Sbjct: 306 QGLRNALTKGLRAFGELVGQKKAKDISADDVMAGAEVLLSVFIRDPQFQSQTKDRLTSPE 365 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRL 449 A + VENA+RD FDH+L N LL V+ER +ERLRRR +REV RKTA +KLRL Sbjct: 366 ATKLVENAVRDHFDHFLADNMERGKALLGEVMERMDERLRRRAEREVKRKTATNAKKLRL 425 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS TELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVASA ++KIR Sbjct: 426 PGKLTDCSGEGDKETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASASADKIRA 485 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I DL+ ALGC R + LRY++V+IMTDADVDGAHIA+LL+TFF+QEM D++ + Sbjct: 486 NSEIADLILALGCGVRKDCDADQLRYDRVVIMTDADVDGAHIATLLMTFFFQEMPDIVRK 545 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HLFL PPL+R+T G +S YA DEEH++++ E K KIEISRFKGLGEM +QL+ Sbjct: 546 GHLFLAQPPLYRLTAGKESRYARDEEHRRELEETVFK--GKKIEISRFKGLGEMNPAQLR 603 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET M + R+L+R+ + + ++ + +LMG + RF+FIQ +A +D Sbjct: 604 ETTMHPDSRSLIRITLPPEFEDRAAVKELVGQLMGRNPEHRFQFIQNKAGDLD 656 >gi|257082500|ref|ZP_05576861.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol] gi|257086693|ref|ZP_05581054.1| gram positive topoisomerase IV [Enterococcus faecalis D6] gi|256990530|gb|EEU77832.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol] gi|256994723|gb|EEU82025.1| gram positive topoisomerase IV [Enterococcus faecalis D6] Length = 663 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%) Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIG TD + LHHL E++DNA+DE ++GY N I V++ + + V D+GRG+P Sbjct: 2 RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + R Sbjct: 62 GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + ++F G P+ L+K K + + GT +TF PD IF F L + + A+L Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 VK + ++ P++E F++ G+K ++ E + ++ + K+G Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232 Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 VE A + + E S+ N + T +GGTHE G++ ++T+ +YA ++ Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289 Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 ++ D +LS+ + E +F GQTK KL + A+ V+N + + YL +N Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349 Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469 + L+ I+ E R RK RE +R RK L GKL EL++V Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G ++ Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587 ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++++G K Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529 Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 SV YA + +++++ K + R+KGLGEM A QL ET MD RTL+RV I Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 + + + LMG K + R K+I++ F Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616 >gi|7437456|pir||T10005 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium leprae gi|1262356|emb|CAA94712.1| DNA gyrase B [Mycobacterium leprae] Length = 697 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 245/690 (35%), Positives = 363/690 (52%), Gaps = 49/690 (7%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + A D Y A+SI ILEGLE VR RPGMY+G T E+ LHHL EV+DN++DE +AG Sbjct: 19 TVAAQRKAQDEYGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVDNSVDEAMAG 78 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEI 150 YA ++V L +G + V DNGRGIPV H T+++++T LHAGGKF +S Y + Sbjct: 79 YATQVDVRLFDDGSVEVADNGRGIPVAVH--ATGVPTVDVVMTQLHAGGKFGGKDSGYNV 136 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS + V + R +SQ + + +P K+ + GT I F Sbjct: 137 SGGLHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVPGIL--KQGEATEATGTTIRFW 194 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--------------- 255 DP IF +D + + Q A+L+ + ++ ++ Sbjct: 195 ADPDIFET-TKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAM 253 Query: 256 ------------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 F++PGGL +++ ++ I I + G VE Sbjct: 254 TVEEKSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGH---EVE 310 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISD 360 A+ W + ++ NTI T EGGTHE G R ALT + KY + + ++ D Sbjct: 311 VAMQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGD 370 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ ++SV + EP+F GQTKTKL + + + V+ + H+ NP++A ++ Sbjct: 371 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVN 430 Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK Sbjct: 431 KAISSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAK 490 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 R+ QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K++ Sbjct: 491 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISRLRYHKIV 550 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQ 598 +M DADVDG HI++LLLT ++ M LIE ++FL PPL+++ +A+ + + Sbjct: 551 LMADADVDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERD 610 Query: 599 KILE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +LE + K + I R+KGLGEM A +L ET MD + R L +V ++ Sbjct: 611 GLLETGLKLGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAA 666 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG D R FI A + + Sbjct: 667 DELFSILMGEDVDARRSFITRNAKDVRFLD 696 >gi|167755161|ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402] gi|167705211|gb|EDS19790.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402] Length = 641 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 248/655 (37%), Positives = 363/655 (55%), Gaps = 19/655 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA Sbjct: 1 MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L + + V+D+GRG+P H K ST+E I T LHAGGKF Y++SGGL Sbjct: 61 SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V V R + Q+F G + K + GT +TF+ D Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDSDITGTIVTFKADKI 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + + A+L+ ++ + ++ +Y+ GG+K Y+ Sbjct: 180 IFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHE-----YYYEGGIKEYVA 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ I EI + T+E + + + I S+CN I T EGGTHE G Sbjct: 235 YINKNKTPIHEEIIYVE---DMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R+ALTR I YA+ K ++ DD+ I+SV +P++ GQTKTKL + + Sbjct: 292 FRLALTRVINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 ++ N + D +L++NP A +++ I ++ + RK + LP Sbjct: 352 VRKIASNIISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A E+FIVEGDSAGGSAK R+R QA+LPLRGKILNV + EKI N Sbjct: 412 GKLADCSSKDASECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ + LRY K++IMTDADVDG HI L+LTF Y+ + L+E Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ + G Y + +E + + + K I R+KGLGEM A QL E Sbjct: 532 FVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGE--GAKYSIQRYKGLGEMNAEQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD KR L ++++++ + + + LMG K + R +FIQE A ++ D+ Sbjct: 590 TTMDPEKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640 >gi|15826870|ref|NP_301133.1| DNA gyrase subunit B [Mycobacterium leprae TN] gi|221229348|ref|YP_002502764.1| DNA gyrase subunit B [Mycobacterium leprae Br4923] gi|13638292|sp|Q59533|GYRB_MYCLE RecName: Full=DNA gyrase subunit B gi|13092417|emb|CAC29513.1| putative DNA gyrase subunit B [Mycobacterium leprae] gi|219932455|emb|CAR70098.1| putative DNA gyrase subunit B [Mycobacterium leprae Br4923] Length = 678 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 245/688 (35%), Positives = 363/688 (52%), Gaps = 49/688 (7%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + A D Y A+SI ILEGLE VR RPGMY+G T E+ LHHL EV+DN++DE +AGYA Sbjct: 2 AAQRKAQDEYGAASITILEGLEAVRKRPGMYVGSTGERGLHHLIWEVVDNSVDEAMAGYA 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISG 152 ++V L +G + V DNGRGIPV H T+++++T LHAGGKF +S Y +SG Sbjct: 62 TQVDVRLFDDGSVEVADNGRGIPVAVH--ATGVPTVDVVMTQLHAGGKFGGKDSGYNVSG 119 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS + V + R +SQ + + +P K+ + GT I F D Sbjct: 120 GLHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVPGIL--KQGEATEATGTTIRFWAD 177 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY----------------- 255 P IF +D + + Q A+L+ + ++ ++ Sbjct: 178 PDIFET-TKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTV 236 Query: 256 ----------GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 F++PGGL +++ ++ I I + G VE A Sbjct: 237 EEKSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGH---EVEVA 293 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDL 362 + W + ++ NTI T EGGTHE G R ALT + KY + + ++ DD+ Sbjct: 294 MQWNGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDI 353 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 ++SV + EP+F GQTKTKL + + + V+ + H+ NP++A ++ Sbjct: 354 REGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKA 413 Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I ++ R+ RK RE V RK+A LPGKLADC +EL++VEGDSAGGSAK Sbjct: 414 ISSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSG 473 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+ QA+LPLRGKI+NV A +++ N ++ ++ ALG ++ LRY K+++M Sbjct: 474 RDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDISRLRYHKIVLM 533 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600 DADVDG HI++LLLT ++ M LIE ++FL PPL+++ +A+ + + + Sbjct: 534 ADADVDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGL 593 Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 LE + K + I R+KGLGEM A +L ET MD + R L +V ++ + Sbjct: 594 LETGLKLGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADE 649 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG D R FI A + + Sbjct: 650 LFSILMGEDVDARRSFITRNAKDVRFLD 677 >gi|257085132|ref|ZP_05579493.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1] gi|256993162|gb|EEU80464.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1] Length = 663 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 233/635 (36%), Positives = 345/635 (54%), Gaps = 33/635 (5%) Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIG TD + LHHL E++DNA+DE ++GY N I V++ + + V D+GRG+P Sbjct: 2 RKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMPT 61 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 H T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + R Sbjct: 62 GMH--ASGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 179 IFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + ++F G P+ L+K K + + GT +TF PD IF F L + + A+L Sbjct: 120 EYMERFEDGGKPIGTLKKIGKTKKRNGTSVTFLPDDTIFSTTN-FSYEILAERLRESAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 VK + ++ P++E F++ G+K ++ E + ++ + K+G Sbjct: 179 LKGVKITLTDER-----GEEPKEEVFHYEEGIKEFVAYLNEEKDTLTPVV-YFSGAKEGI 232 Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 VE A + + E S+ N + T +GGTHE G++ ++T+ +YA ++ Sbjct: 233 ---EVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKD 289 Query: 355 ISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 ++ D +LS+ + E +F GQTK KL + A+ V+N + + YL +N Sbjct: 290 KNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENS 349 Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIV 469 + L+ I+ E R RK RE +R RK L GKL EL++V Sbjct: 350 EMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLV 409 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSAGGSAKQ R+R QA+LPLRGK++N A + I N++I ++ +G ++ Sbjct: 410 EGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFS 469 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TK 587 ED Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL+++++G K Sbjct: 470 IEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKK 529 Query: 588 SV--YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 SV YA + +++++ K + R+KGLGEM A QL ET MD RTL+RV I Sbjct: 530 SVIEYAWTDGELAEVIDKVGK----GYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRI 585 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 + + + LMG K + R K+I++ F Sbjct: 586 DD----AAQAERRVTTLMGDKVEPRRKWIEQHVQF 616 >gi|126651999|ref|ZP_01724191.1| DNA gyrase subunit B [Bacillus sp. B14905] gi|126591268|gb|EAZ85377.1| DNA gyrase subunit B [Bacillus sp. B14905] Length = 644 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 375/648 (57%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+ I+V++ Sbjct: 14 QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIQVTI 73 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++ V DNGRGIPV K K +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 74 EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS E V V R+ I KF RG + L+ ++ GT F+ DP+IF + Sbjct: 133 VNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIFKETTV 191 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ ++ + ++E E+ +++ GG+++Y++ +++ Sbjct: 192 YEYDILAHRIRELAYLNRGIRITIADEREGEERSTT-----YHYEGGIRSYVEHLNQSKE 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 I I EK G +VE A+ + S+ N I T EGGTHESG + ALTR Sbjct: 247 PIHDPIDVL-GEKDGI---SVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + ++ +D+ I+SV +P+F GQTKTKL + + + Sbjct: 303 VINDYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNA 362 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 D F+ ++++NP A K++E ++ ++ + RK A+ LPGKLADCS Sbjct: 363 LFSDGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK R+R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G ++ E RY K+IIMTDADVDGAHI +LLLTFF++ + LIE ++++ P Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG Y +D+E ++ILE K K + R+KGLGEM A QL +T MD Sbjct: 543 PLYQVKQGKHVEYCYDDETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWDTTMDPEH 600 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+VE++ + + +LMG + + R +FI+E A + ++ Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643 >gi|18414465|ref|NP_568133.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative [Arabidopsis thaliana] gi|75165162|sp|Q94BZ7|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana] gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana] gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana] Length = 732 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 248/690 (35%), Positives = 389/690 (56%), Gaps = 27/690 (3%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 F SQ ++ S + A + S Y + I++LEGL+PVR RPGMYIG Sbjct: 56 FQLTSVLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 115 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T + LHHL E++DNA+DE AGYA+ ++V L +G ++VVDNGRGIP + HP KS Sbjct: 116 TGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 174 Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 +LE +LT LHAGGKF ++ Y +SGGLHGVG+SVVNALS+ L V+V R Q +SR Sbjct: 175 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSR 234 Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 G P++ L + + + +GT I F PD ++F FD + + A+L+ +V Sbjct: 235 GKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNPKVTI 294 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + + EK + E+ F GGL Y+ +++ I + ++ + TV+ Sbjct: 295 SLKKEDDDPEKT---QYSEYSFAGGLTEYVSWLNTDKNPIHDVLGF----RREINGATVD 347 Query: 304 WAIAWCE--ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 A+ WC + + Y N+I T +GGTH G++ +LTR + A+ ++ ++ IS+ Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 + + I+SV + PEF GQTKT+L + + ++ V+ ++++ +L +P ++ Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467 Query: 420 EWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + +R + V K+ ++ LPGKLADCS +E+FIVEGDSAGGSA Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEK 537 KQ R+R QA+LPLRGKILN+ + N++I +L+ LG + +++E+LRY K Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +II+TDADVDGAHI +LLLTFF++ L + +++ PPLF++ +G + Y +D+ Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADL 647 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +KI F + I RFKGLGEM+ QL ET M+ R L ++ ++ + + Sbjct: 648 KKITSNFPAN--ASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDD----IAEANM 701 Query: 658 SINKLMGTKADERFKFIQERAS--FIDDVG 685 + + LMG + D R + I+ A+ + + Sbjct: 702 TFSSLMGARVDVRKELIKNAATRINLQRLD 731 >gi|42519096|ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533] gi|41583383|gb|AAS08992.1| topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533] Length = 652 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A AN++ S +YD SSI+IL GLE VR RPGMYIG TD L+HL E++DN++DE +AGY Sbjct: 2 AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGG Sbjct: 61 GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 118 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF ++ + + + A+L VK + ++E +EF + G+K++ Sbjct: 179 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 231 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331 + E++ + ++F ++ G VE++ + + E S+ N + T +GG+HE Sbjct: 232 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 287 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387 +G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 288 AGARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 347 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445 + A+ V++ + + +YL++N A L++ + + R +K R+ +R + Sbjct: 348 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 407 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 K L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 408 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 467 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M Sbjct: 468 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 527 Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 ++E +++ PPL+++ +G K YA +E + ++ K + RFKGLG Sbjct: 528 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 583 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 584 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 638 >gi|326383914|ref|ZP_08205598.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395] gi|326197373|gb|EGD54563.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395] Length = 684 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 244/694 (35%), Positives = 373/694 (53%), Gaps = 46/694 (6%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + ++P + +S Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN+ Sbjct: 2 ADTSGNAPKKSGKSKPSEYGADSISILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGYA ++V+L +G + VVD+GRG+PV H +E+I+T LHAGGKFD+ Sbjct: 62 VDEAMAGYATRVDVTLLADGGIRVVDDGRGMPVGMH--ATGVPAVEVIMTQLHAGGKFDS 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 +Y +SGGLHGVGISVVNALS ++ + + R +++ Q ++ P LE + + GT Sbjct: 120 DSYAVSGGLHGVGISVVNALSTKVDLEIKRNGSVWRQTYNNAEPTPLLE--GEAASGTGT 177 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG--------- 256 ++F DPKIF ++ + + Q A+L+ + + ++ Sbjct: 178 SVSFWADPKIFET-TEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDG 236 Query: 257 ---------------IPEKEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRG 300 + +++P GL Y++ +++ I + + +G Sbjct: 237 DASIKTEEQKATAIAKVKTRTYHYPDGLIDYIKHLNSRSKAPIHKTVVGFTAKGEGH--- 293 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357 VE A+ W E + ++ NTI T EGGTHE G R ALT + +YA + ++ + Sbjct: 294 EVEIAMQWNEGYAESVHTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKL 353 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+ ++SV + +P+F GQTKTKL + + + V+ + + NP EA Sbjct: 354 SGDDIREGLAAVISVKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKT 413 Query: 418 LLEWVIERSE-ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 +++ + + RR + V RKTA LPGKLADC N E++IVEGDSAGG Sbjct: 414 IIKKAADSQQARLAARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGG 473 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+ QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LRY Sbjct: 474 SAKSGRDSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIAKLRYH 533 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDE 594 K+++M DADVDG HIA+LLLT ++ M LIEQ H++L PPL+++ +G + +A+++ Sbjct: 534 KIVLMADADVDGQHIATLLLTLLFRFMRPLIEQGHVYLAMPPLYKLKWQKGQEPEFAYND 593 Query: 595 EHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + +LE K GK I R+KGLGEM AS+L ET MD + R L +V ++ Sbjct: 594 RERDALLEAGKAAGKKINTDDGIQRYKGLGEMNASELWETTMDPDVRVLKQVTLDD---- 649 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 650 AAAADELFSILMGEDVVARRTFIARNAKDVRFLD 683 >gi|183602673|ref|ZP_02964037.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219682504|ref|YP_002468887.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011] gi|241190071|ref|YP_002967465.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195477|ref|YP_002969032.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218091|gb|EDT88738.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219620154|gb|ACL28311.1| DNA gyrase, B subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248463|gb|ACS45403.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250031|gb|ACS46970.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177774|gb|ADC85020.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12] gi|295793058|gb|ADG32593.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9] Length = 705 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 257/711 (36%), Positives = 379/711 (53%), Gaps = 31/711 (4%) Query: 1 MTDDSIDLFSTL--PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPV 58 M D D + + + L+ +G + + + ++YDAS +R+LEGLE V Sbjct: 1 MADQPTDSAAESLESASNDPIDQNLEANGTDQNDEQLDDTLSPEHYDASDLRVLEGLEAV 60 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R+RPGMYIG T + LHHL E++DN++DE +AGYA IEV++ + + VVD+GRGIPV Sbjct: 61 RIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPV 120 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 + P KS +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + V V RQ Sbjct: 121 DEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDVEVRRQGY 179 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236 ++Q + P PLE+ +R+ GT +TF DPKIF +D L Q A+ Sbjct: 180 YWTQTYIDQHPTGPLERGRAMRDDESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAF 238 Query: 237 LSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLIS 284 L+ +K + +++ E + + + G+K Y+ +++R Sbjct: 239 LNKGLKITLTDMRQVDEARDEVAGDGDNTVEELHQTVTYQYKNGIKDYVAFLVKSRGSAP 298 Query: 285 SEIFTGKTEKKG-THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E E + T + E A+ W + ++ NTI T EGGTHE G R ALT I Sbjct: 299 IEPDVIDIESEDLTIGVSAEIAMQWTSAYSESVHTFANTIATTEGGTHEEGFRAALTSMI 358 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +YA + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + Sbjct: 359 NRYARDKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVM 418 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQN 459 + +L +P EA +++ +E S RL +K RE R+ +I +P KL DC N Sbjct: 419 NEKLGDWLDAHPNEAKNIIQKALEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSN 478 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A Sbjct: 479 DPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILNTERASLDRMLKSDTIESLITA 538 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G + + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL Sbjct: 539 IGGGYGEDFDLDKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPL 598 Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDA 635 +R+ + + + + ++L E K +G+ I R+KGLGEM +L ET MD Sbjct: 599 YRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDP 658 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L +V I L ++ + LMG + + R FIQ A + Sbjct: 659 DHRILKQVHIEDAL----QADETFSMLMGDEVEPRRLFIQRNAHNARWIDA 705 >gi|260583815|ref|ZP_05851563.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC 700633] gi|260158441|gb|EEW93509.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC 700633] Length = 682 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 239/656 (36%), Positives = 358/656 (54%), Gaps = 35/656 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ Y+ SI++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++GYA+ I Sbjct: 2 SKVTNQYNDDSIQVLEGLEAVRKRPGMYIGSTDHRGLHHLAYEIVDNAVDEALSGYASKI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V++ +G L+V DNGRG+P H T+++I T LHAGGKF Y+ SGGLHGV Sbjct: 62 DVTIHKDGSLSVRDNGRGMPTGKH--ASGIPTIQVIFTVLHAGGKFGQGGYKTSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 G SVVNALSD L V V R +++Q F G +S ++K++ R GT + F P IF Sbjct: 120 GASVVNALSDWLEVEVLRDGVLYTQTFKTGGEKVSSIKKEKTNRKGSGTTVRFLPSKHIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + L + + A+L + + ++ +EF + G++ ++Q Sbjct: 180 STIV-WSYETLAERLRESAFLLKGLTITLTDER-------TDTSDEFCYEEGIRNFIQYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + +S + T E+A + + I S+ N + T +GGTHE G++ Sbjct: 232 NEEKDTLSPIVDFNST----IDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMK 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 ALT+ +YA ++ ++ D+ I+S+ + E +F GQTK KL + Sbjct: 288 TALTKAFNEYARKVGLLKEKDKNLEGSDVREGLTAIVSLRVPEEILQFEGQTKDKLGTPA 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LR 448 A+ V+N + + +L +N A +L+ ++ E R RK RE +R K Sbjct: 348 ARSIVDNTIFEHLGIFLTENGEIAQELIRKALKAREAREASRKAREESRNGKKGKKKETL 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GKL EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A I Sbjct: 408 LSGKLTPAQGKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASLSDIL 467 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G + + ED Y+K++IMTDAD DGAHI LLLTFFY+ M LIE Sbjct: 468 KNEEINTIIYTIGAGVGNDFNIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIE 527 Query: 569 QKHLFLISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++L PPLF+I++G K YA E+ ++ +++ K + R+KGLGEM Sbjct: 528 AGKVYLALPPLFKISKGTGKKQVVEYAWTEKELEEKIKKVGK----GYLLQRYKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 A QL ET M+ + RTL+RV I+ + ++ LMG K + R K+I+ F Sbjct: 584 ADQLWETTMNPDTRTLIRVVIDD----KAQAERRVSTLMGNKVEPRRKWIESHVEF 635 >gi|283457093|ref|YP_003361656.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] gi|283133071|dbj|BAI63836.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] Length = 713 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 247/682 (36%), Positives = 360/682 (52%), Gaps = 37/682 (5%) Query: 35 FANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + Q+AS+ Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 37 ASEQNASEQQHEYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALA 96 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ I+V++ +G + V D+GRGIPV+ HP +KST+E+++T LHAGGKF Y +S Sbjct: 97 GYASKIDVTIQADGAVRVEDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYSVS 155 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + V RQ + FS G +K + +K GT TF P Sbjct: 156 GGLHGVGISVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRKGEPSDKTGTIQTFYP 215 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-------------------- 251 DP+IF FD L Q A+L+ + + ++E Sbjct: 216 DPEIFET-VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRV 274 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 + + GL Y+ I +E + ++E A+ W Sbjct: 275 HANAEGFTTVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGA 334 Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368 + SY NTI T EGGTHE G R ALT + +YA + + ++ +D+ Sbjct: 335 YKESVYSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 394 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428 ++S+ I EP+F GQTKTKL + +A+ + + D + +NP A ++ I ++ Sbjct: 395 VISIKISEPQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQA 454 Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 R+ RK RE R+ + +PGKL DCS +E+++VEGDSAGGSA Q R+ + Q Sbjct: 455 RIAARKARETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRDPNTQ 514 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 A+LPLRGKILNV A ++ +N +I ++ A G + E RY K+++M DADVD Sbjct: 515 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIGDDFDIEKARYHKIVLMADADVD 574 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK 606 G HI +LLLT ++ M LIE +++L PPL+RI Y + + + + L Sbjct: 575 GQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAA 634 Query: 607 HGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 + I R+KGLGEM ++L +T MD +RTLL+V++ + LM Sbjct: 635 KNLRLPKDNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMED----AAAADQIFSVLM 690 Query: 664 GTKADERFKFIQERASFIDDVG 685 G + R +FIQ+ A I + Sbjct: 691 GEDVEARREFIQQNAKDIRFLD 712 >gi|296392546|ref|YP_003657430.1| DNA gyrase subunit B [Segniliparus rotundus DSM 44985] gi|296179693|gb|ADG96599.1| DNA gyrase, B subunit [Segniliparus rotundus DSM 44985] Length = 673 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 244/683 (35%), Positives = 364/683 (53%), Gaps = 43/683 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + +Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 SEKKNADKSSYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V+L +G + VVD+GRGIPV H T+E++LT LHAGGKFD+ +Y +SGG Sbjct: 62 ATRVDVTLLADGGVEVVDDGRGIPVAPH--ASGPPTVEVVLTVLHAGGKFDSDSYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS +L V + +SQ + + P + + GT + F DP Sbjct: 120 LHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKPGPLTK--GDPVKRTGTTVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF +D + + Q A+L+ + + +E Sbjct: 178 EIFETTH-YDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDTAEVARSEQE 236 Query: 259 --------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE 310 ++ E+++PGGL Y+ ++ + + I + + + +G VE A+ W Sbjct: 237 AQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGH---EVEIAMQWNS 293 Query: 311 EN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAV 367 + ++ NTI T EGGTHE G R ALT + KYA + ++ ++ DD+ Sbjct: 294 GYTESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLTGDDVREGLA 353 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ + Sbjct: 354 AVISVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLIVTKAQQAYL 413 Query: 428 ERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486 R R RE RKTA LPGKLADC +E++IVEGDSAGGSAK RN Sbjct: 414 AREAARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEF 473 Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546 QA+LP+RGKI+NV A +++ N ++ ++ A G ++ LRY K+++M DADV Sbjct: 474 QAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVLMADADV 533 Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFK 605 DG HI++LLLT ++ M L+E H++L +PPL+++ + YA+ + + ++E Sbjct: 534 DGQHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDALIEAGL 593 Query: 606 KHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 GK + R+KGLGEM A +L ET MD + RTL V ++ + + L Sbjct: 594 SAGKRINKDDGVQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDD----AAAADELFSIL 649 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG R FI A + + Sbjct: 650 MGEDVPARRGFIARNARDVRFLD 672 >gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius] Length = 611 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 235/626 (37%), Positives = 360/626 (57%), Gaps = 20/626 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T E+ LHHL E++DN++DE +AGYA+ IEV ++ + ++ V DNGRGIPV+ K Sbjct: 1 MYIGSTSERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQEK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 + +E+ILT LHAGGKF Y++SGGLHGVG SVVNALSD L V V R I Q Sbjct: 61 M-GRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSDTLEVYVHRDGRIHHQA 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 + +G+P L++ ++ GT I F+ D IF + ++ L K + A+L+ ++ Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + +++ ++ +++ GG+K+Y++ EN+ + E + VE Sbjct: 179 TLTDERDEE----NVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDI---EVE 231 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360 A+ + + +Y N I T EGGTHE G + ALTR + Y ++ + + Sbjct: 232 IALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGE 291 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D ++S+ +P+F GQTKTKL + + ++ V+ + F+ +L ++P A ++E Sbjct: 292 DTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVE 351 Query: 421 WVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I S R+ +K RE RK+A+ LPGKLADCS +E+F+VEGDSAGGS K Sbjct: 352 KGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTK 411 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 R+ QA+LPLRGKILNV A +KI NN +I +V A G ++ RY K++ Sbjct: 412 SGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIV 471 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 IMTDADVDGAHI +LLLTFFY+ M LIE ++++ PPL+++TQG + Y ++ K Sbjct: 472 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 531 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + E+ + K I+R+KGLGEM A QL ET M+ R +L+V ++ + + + Sbjct: 532 LKEKL--NPTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAI----EADQTF 585 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI++ A + ++ Sbjct: 586 EMLMGDVVENRRQFIEDNAVYA-NLD 610 >gi|227510437|ref|ZP_03940486.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513446|ref|ZP_03943495.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577] gi|227524588|ref|ZP_03954637.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290] gi|227083319|gb|EEI18631.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577] gi|227088263|gb|EEI23575.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290] gi|227190089|gb|EEI70156.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 682 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 249/663 (37%), Positives = 360/663 (54%), Gaps = 33/663 (4%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + YD SSI+ILEGLE VR RPGMYIG TD + LHHL E++DN +DEV+ Sbjct: 26 KKESQKMVKQKQKYDDSSIQILEGLEAVRKRPGMYIGSTDYRGLHHLVYEIVDNGVDEVL 85 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY ++I V++ + +TVVD+GRG+PV H K T E+ILT LHAGGKF Y+ Sbjct: 86 AGYGDMIRVTIHKDNSITVVDHGRGMPVGMH--ASGKPTPEVILTQLHAGGKFGQGGYKT 143 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITF 209 SGGLHGVG SVVNALS L VT+ R + + F G P+ L K K + GT ++F Sbjct: 144 SGGLHGVGASVVNALSTWLKVTIVRDGYKYEEDFKDGGHPVGTLRKLGKTKEHTGTTVSF 203 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD IF + ++ + L + + A+L K ++ E ++E F++ G+ Sbjct: 204 KPDSSIFTNTV-YNFSTLSERLRESAFLLKGTKIILIDERPGQE-----QEETFHYEDGI 257 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 K ++Q E++ ++ K G VE A + + + S+ N + T +GG Sbjct: 258 KEFVQYLNEDK-HTLGDVMYFDGTKDGV---EVEVAAQYNDGYSETMMSFVNNVRTKDGG 313 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTK 384 THE+GLR A T+ YA + ++ D+ +LS+ I E +F GQTK Sbjct: 314 THEAGLRNAWTKAFNDYARKVGLLKDKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTK 373 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 KL + +A+ V+N + + +YL++N A L+ + + R R+ R+ R Sbjct: 374 EKLGTPEARSIVDNVVSEKLGYYLMENGEFAQMLVHKALRARQARQAARRARDETRNGKR 433 Query: 445 RKLR---LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 K + L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN Sbjct: 434 HKKQERLLSGKLTPAQSKDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTER 493 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A +I N++I ++ +G + + ED Y+K+IIMTDAD DGAHI LLLTFFY+ Sbjct: 494 AKLPEIMKNEEINTMIYTIGAGVGADFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYK 553 Query: 562 EMYDLIEQKHLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M +I++ +F+ PPL+++ +G K YA E + + F K + RF Sbjct: 554 YMRPMIDKGRVFIALPPLYKLQKGAGKKAKIQYAWTNEELDSVSKTFGK----GYSLQRF 609 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM A QL ET MD RTL++V I+ + + LMG K + R K+I++ Sbjct: 610 KGLGEMNADQLWETTMDPATRTLIKVRIDD----AALAERRVTTLMGDKVEPRRKWIEQN 665 Query: 678 ASF 680 F Sbjct: 666 VKF 668 >gi|315605502|ref|ZP_07880539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] gi|315312769|gb|EFU60849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] Length = 697 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 242/678 (35%), Positives = 355/678 (52%), Gaps = 30/678 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 25 ADNENTAGGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 84 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ IEV++ +G + VVDNGRGIPV+ HP +K T+E+++T LHAGGKF Y +S Sbjct: 85 GYADHIEVTIQADGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 143 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + + RQ ++ F+ G + + N+ GT F P Sbjct: 144 GGLHGVGISVVNALSTRVDTEIRRQGYVWRMSFANGGSPITELVRGEETNETGTTQVFYP 203 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA---------------EKYG 256 DP IF FD L + Q A+L+ ++ + ++E A ++ Sbjct: 204 DPTIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGEDKASGKEAA 262 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314 + + GL+ Y++ + + E + +VE A+ W Sbjct: 263 THRTVSYCYEYGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTSAYSSS 322 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372 + ++ NTI T EGG HE G R ALT + +Y + ++ DD+ ++S+ Sbjct: 323 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISI 382 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F GQTKTKL + +A+ V + + +P +A ++ R+ Sbjct: 383 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAA 442 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE R+ + +PGKL DCS E+FIVEGDSAGGSA R+ QA+LP Sbjct: 443 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 502 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 +RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG HI Sbjct: 503 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 562 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610 A+LLLT ++ M LIE H F+ PPL+RI + +A+ ++ + ++LE G+ Sbjct: 563 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDQLLEAGATAGRR 622 Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 623 LPKEGGIQRYKGLGEMNDHELWETTMDPENRILKQVTLDE----AADADETFTILMGDDV 678 Query: 668 DERFKFIQERASFIDDVG 685 D R FIQ A+ + + Sbjct: 679 DRRRTFIQRNATDVRFLD 696 >gi|75288399|sp|Q5YLB4|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] Length = 731 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 238/670 (35%), Positives = 375/670 (55%), Gaps = 23/670 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + AF + S Y + I++LEGL+PVR RPGMYIG T + LHHL E++DNA+ Sbjct: 73 SSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAV 132 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144 DE AG+A I+V L + +++ DNGRGIP E HP KS+LE +LT LHA Sbjct: 133 DEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHP-VTKKSSLETVLTVLHAGGKFGGS 191 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRN 201 +S Y +SGGLHGVG+SVVNALS L VT+ R + QK+SRG P++ L + ++R+ Sbjct: 192 SSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLICHDLPVEMRD 251 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 ++GT I F PD ++F + FD + + A+L+ + + EK + Sbjct: 252 RQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDIDPEKI---QCN 308 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321 E+++ GGL Y++ ++ + + K T ++W + + Y N+ Sbjct: 309 EYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCS--DAYSDTMLGYANS 366 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T +GGTH G++ ALTR + + ++ ++ IS+ + + ++SV + PEF Sbjct: 367 IRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEF 426 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438 GQTKT+L + + ++ V+ ++++ YL +P +L + +R + V Sbjct: 427 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 486 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K+ ++ LPGKLADCS E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN Sbjct: 487 RQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 546 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557 + + N++I +L+ LG + + +++ LRY K+II+TDADVDGAHI +LLLT Sbjct: 547 IERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLT 606 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ L E+ +++ PPL+++ +G + Y +D+ +K+ F + I RF Sbjct: 607 FFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSN--ASYNIQRF 664 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM+ +QL ET M+ R L ++ + + + LMG++ D R + IQ Sbjct: 665 KGLGEMMPAQLWETTMNPETRLLKQLVVED----AAEANVVFSSLMGSRVDIRKQLIQNS 720 Query: 678 AS--FIDDVG 685 AS ++ + Sbjct: 721 ASMMNLEQLD 730 >gi|114327348|ref|YP_744505.1| DNA topoisomerase IV subunit B [Granulibacter bethesdensis CGDNIH1] gi|114315522|gb|ABI61582.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1] Length = 677 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 347/692 (50%), Positives = 462/692 (66%), Gaps = 29/692 (4%) Query: 6 IDLF--STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DLF + PP SQ +++ + D+Y A I +LEGLEPVR RPG Sbjct: 2 NDLFGGAKSPPPSQRGAKQRTEMN-------------EDDYSAKDIEVLEGLEPVRRRPG 48 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIGGTDE ALHHL +E++DNAMDE +AG+A +I+++LD +T+ DNGRGIP++ HPK Sbjct: 49 MYIGGTDENALHHLVAEILDNAMDEAVAGHATVIDLTLDPGNTVTIRDNGRGIPIDPHPK 108 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 F N S LE+ILTTLH+GGKF Y SGGLHGVG SVVNALS + V VAR ++ Q Sbjct: 109 FKNLSALEVILTTLHSGGKFAGKAYATSGGLHGVGSSVVNALSATMEVEVARNRVLWRQS 168 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 ++RG P++PL + N+RGT+I F PD +IFG F ARL ++ +SKAYL V+ Sbjct: 169 YARGKPMTPLIEVGAAPNRRGTQIRFTPDEEIFGRLN-FSPARLYRLCRSKAYLFRGVQI 227 Query: 244 CWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR- 299 W CD + + K IP + +FPGGL+ L + +L +I++G+ + KG + Sbjct: 228 RWKCDPSLLKNSGKEDIPAEATLHFPGGLRDSLADDIGETTLAIPQIWSGEADMKGDGQK 287 Query: 300 -----GTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353 G VEWA+AW + + + SYCNT+ T GGTHE G R AL +G++ + E NKR Sbjct: 288 ETQTGGRVEWALAWLDGADGFVHSYCNTVPTPLGGTHEQGFRAALLKGLRAWGEQRGNKR 347 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 A +I ++D+M S LS F+REP+F GQTK KL S +A R VE+A+RD FDH++ +P Sbjct: 348 AAAITAEDIMGSLAAKLSAFVREPQFQGQTKEKLTSPEAVRLVESAMRDRFDHFMAGDPA 407 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A LL +VIER+EER+RRR+Q++ RK+A R+LRLPGKLADCS A TELF+VEGDS Sbjct: 408 GADNLLAYVIERAEERIRRREQKDTPRKSATRRLRLPGKLADCSSENAAETELFLVEGDS 467 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAKQAR R NQAVLPLRGKILNVASA ++K+R NQ++ DL++ALGC ++ L Sbjct: 468 AGGSAKQARRRENQAVLPLRGKILNVASASADKLRQNQELKDLIEALGCGVGERFDIARL 527 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RY +VIIMTDADVDGAHIASLL+TFFY+E+ +L+ + HL+L PPL+R+TQG S YA D Sbjct: 528 RYGRVIIMTDADVDGAHIASLLMTFFYRELPELVRRGHLYLAQPPLYRLTQGATSRYAMD 587 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + ++++ K GKIE+SRFKGLGEM + LK+T MD +R LL+V Sbjct: 588 DAELDRLMKSGFKK-TGKIEVSRFKGLGEMPPAILKDTTMDPARRVLLKV--LTPPEDRV 644 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T + + LMG K + RF+FIQ+ A D+ Sbjct: 645 RTGELVESLMGKKPELRFQFIQDNAPRAGDLD 676 >gi|227889992|ref|ZP_04007797.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|227849436|gb|EEJ59522.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] Length = 661 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 246/659 (37%), Positives = 362/659 (54%), Gaps = 34/659 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A AN++ S +YD SSI+IL GLE VR RPGMYIG TD L+HL E++DN++DE +AGY Sbjct: 11 AKANKTTS-SYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNHLIYEIVDNSVDEAMAGY 69 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGG Sbjct: 70 GKEINVTIHKDNSVTVQDFGRGMPTGMHE--SGIPTIEVILTVLHAGGKFTEKNYQTSGG 127 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPD 212 LHGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 128 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 187 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P IF ++ + + + A+L VK + ++E +EF + G+K++ Sbjct: 188 PTIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSF 240 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHE 331 + E++ + ++F ++ G VE++ + + E S+ N + T +GG+HE Sbjct: 241 VSYLNEDKDTMG-DVFYFSGKQNGI---EVEFSGQYNDGYSENFVSFVNNVRTADGGSHE 296 Query: 332 SGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKL 387 +G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 297 AGARSGFTKSFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKL 356 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445 + A+ V++ + + +YL++N A L++ + + R +K R+ +R + Sbjct: 357 GTPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRK 416 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 K L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 417 KEILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQ 476 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M Sbjct: 477 DIFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRP 536 Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 ++E +++ PPL+++ +G K YA +E + ++ K + RFKGLG Sbjct: 537 MVEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLG 592 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 593 EMNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647 >gi|300361706|ref|ZP_07057883.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] gi|300354325|gb|EFJ70196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] Length = 661 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 241/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AGY Sbjct: 11 AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 70 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGGL Sbjct: 71 KEINVTIHKDNSVTVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 128 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 129 HGVGSSVVNALSSYLKVRVVRNGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ + + + A+L VK + ++E +EF + G+K+++ Sbjct: 189 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSFV 241 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332 E++ + ++F ++ G VE+A + + E S+ N + T +GG+HE+ Sbjct: 242 SYLNEDKDTMG-DVFYFSGQQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 297 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 298 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 357 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446 + A+ V++ + + +YL++N A L++ + + R +K R+ +R +K Sbjct: 358 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 417 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 418 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 477 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M + Sbjct: 478 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 537 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +E +++ PPL+++ +G K YA +E + ++ K + RFKGLGE Sbjct: 538 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELNEDSKDMGK----GFALQRFKGLGE 593 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 594 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647 >gi|83319442|ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110022|sp|P50028|GYRB_MYCCT RecName: Full=DNA gyrase subunit B gi|83283328|gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 643 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 350/646 (54%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD S+I++LEGLE VR RPGMYIG TD K LHHL E++DNA+DE +AGY I+V L Sbjct: 5 KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+DNGRGIP H K T E+I + LHAGGKFD++ Y+ SGGLHGVG SV Sbjct: 65 EKDNSITVIDNGRGIPTGMHK--TGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS + R I +F G L K GT I F PD IF + A Sbjct: 123 TNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYKTGTTINFLPDDTIFSN-AK 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + + + A L+ +K S E+ F GL +++ +++++ Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQDGLVEFVKELVDDKT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 ++ I K +++ ++N I + N + T +GGTH G + L R Sbjct: 235 PVTDIITINNESKNIIVEIALQYTE---DDNEIILGFANNVKTIDGGTHLVGFKSGLIRA 291 Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I YA+ + K + S+DL V I++V I E E+ GQTK+KL + DA+ VE Sbjct: 292 INDYAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455 + + ++L++N + A K++E + + R+ ++ R+ + +K GKL Sbjct: 352 IVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 EL++VEGDSAGGSAK R+R+ QA+LPLRGK++N A + N++I Sbjct: 412 AQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A+G + D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI K +++ Sbjct: 472 IINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIA 531 Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT KS Y DEE K F K K EI R+KGLGEM A QL +T MD Sbjct: 532 LPPLYKITFNDKSFIYLWDEEELNK----FNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R +++V I+ L + LMG ++R +IQE F Sbjct: 588 PKNRKIIQVTISDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629 >gi|157827616|ref|YP_001496680.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389] gi|157802920|gb|ABV79643.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389] Length = 662 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 325/660 (49%), Positives = 445/660 (67%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + ++ Y A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DN+MDE +A Sbjct: 8 NKEKKPKIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNSMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+GGKF ++ Y+ + Sbjct: 68 GFASIITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNAL++ L + V +Q ++ Q +++G L+ L +E + +GT I F P Sbjct: 128 GGLHGVGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IFGDK F+ ++ ++ +SKAYL V W C+ E + +P+K FP GLK Sbjct: 188 DPEIFGDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEAS--SDVPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ LI++EIF+G E + + + + I SYCNT+ T GGTH Sbjct: 246 YLSSKITPDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ AL R +K Y E+ NK+ ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSALLRRLKAYGEMVGNKKTANLAIEDILETASVVLSIFIAEPTFQGQTKEKLVSQ 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + EN ++D FDH+L N A LLE I +E RL ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPAENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKTISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E Sbjct: 486 QAIQDLEIALACGSMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA+DEE K K+ ++ K K KIE+ RFKGLGEM+ QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I+++ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661 >gi|603237|gb|AAA57341.1| DNA gyrase B subunit [Mycoplasma gallisepticum] gi|1583652|prf||2121321A DNA gyrase:SUBUNIT=B Length = 646 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 253/659 (38%), Positives = 371/659 (56%), Gaps = 25/659 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N + D Y + SI++LEGL VR RPGMYIG TD+K LHH+ E+IDN++DE++AGY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTT 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++++L N + V D+GRGIPV+ H K NKST+E +LT LHAGGKFD+ TY +SGGLHG Sbjct: 62 VKLTLKDNYLVEVEDDGRGIPVDIHEK-TNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKI 215 VG SVVNALS V V R I +F G + L PLE K+GTRI F PD I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVSLKPLEIIGTDNKKQGTRIQFVPDFSI 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 +D + + A+L+ +K ++ ++ + + + GG+K Y++ Sbjct: 181 MEQF-EYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQE-----WLYEGGIKQYVEN 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCE-ENPEITSYCNTILTDEG 327 ++ I +I G+ + K T +E A + S+CN I T++G Sbjct: 235 LNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAI-SIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE GLR+ R + E K I +DL I+S+ EP++ GQTK + Sbjct: 295 GTHEEGLRMLFIRSYRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDR 354 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + + + + + + + + ++NP EA K+ + R R E RK+ Sbjct: 355 LGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESARKSPFES 414 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC+ +EL+IVEGDSAGGSAK R+R QA+LPLRGK+LNV A EK Sbjct: 415 ASLPGKLADCTTKDG-ISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEK 473 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I L+ A+G ++ + +RY K+IIMTDADVDGAHI LLLTFF++ M+ L Sbjct: 474 IFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPL 533 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 IE+ H+++ PPL+R++ ++ Y + + ++ + + + E+ R+KGLGEM Sbjct: 534 IEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQ---NPNVRYELQRYKGLGEMDDV 590 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KR LL+V IN + + + LMG + R FI++ A + ++ Sbjct: 591 QLWETTMDPEKRILLKVSIND----AANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 645 >gi|296453192|ref|YP_003660335.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JDM301] gi|296182623|gb|ADG99504.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. longum JDM301] Length = 709 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 14 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 73 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ P Sbjct: 74 STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 132 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 133 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 192 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ + + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 193 HPTAPLKQGDPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 251 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y+ ++ R E E Sbjct: 252 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 311 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 312 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 371 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 372 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 431 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC + ELFI Sbjct: 432 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 491 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 492 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 551 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 552 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 611 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 612 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 671 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 672 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 709 >gi|328954619|ref|YP_004371952.1| DNA gyrase subunit B [Coriobacterium glomerans PW2] gi|328454943|gb|AEB06137.1| DNA gyrase subunit B [Coriobacterium glomerans PW2] Length = 674 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 258/685 (37%), Positives = 357/685 (52%), Gaps = 49/685 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++Y+ I+ILEGLE VR RPGMYIG T LHHL EV+DN++DE +AGY I Sbjct: 2 AKKNDYNGGEIKILEGLEAVRKRPGMYIGSTSASGLHHLVYEVVDNSVDEAMAGYCTRIG 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV+DNGRGIPV+ HP TLE+++T LHAGGKFDN Y++SGGLHGVG Sbjct: 62 VTIHADNSVTVIDNGRGIPVDKHP-VKRIPTLEVVMTILHAGGKFDNKAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS + V V R I+ FSRG + + GT ITF PD +IF Sbjct: 121 ISVVNALSHRVRVQVKRDGNIYEMVFSRGKTVEKMHIVG-SSRSTGTTITFWPDDEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD L Q A+L+ ++ + ++E+A P EEF + GG+ +++ Sbjct: 180 TI-FDYDTLRNRLQETAFLNRNLRITITDERELA-----PRTEEFVYAGGIVDFVKYLNH 233 Query: 279 NRSLIS----SEIFTGKTEKK--GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + +G +E+ G VE A+ W + Y N I T EGG H Sbjct: 234 GKDIPEGLKKPIYVSGASEEDAPVERTGEVEVALQWSSSYTENVMCYANDIFTPEGGMHL 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALTR I YA ++ ++ DD+ ++SV + +P+F GQTK KL S Sbjct: 294 EGFRTALTRVINDYARRQNMIKEKDANLTGDDVREGLAAVISVKLADPQFEGQTKAKLGS 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + V L D YL ++P +++ + S R RK RE R+ + + Sbjct: 354 SFMRGLVLKVLSDGLSDYLEEHPRAGREIVRKAQQASRARNAARKAREATRRKSLLETAA 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS A TELFIVEGDSAGGSAK R R QA+LPLRGKILNV G + Sbjct: 414 LPGKLADCSVRDAEMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473 Query: 509 NNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ I L+ A+G + RY K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 474 SSETIQSLITAIGSGVTQVQGDGEGFDVSKARYHKIIIMTDADVDGAHIRTLLLTFFYKY 533 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAH---------------------DEEHKQKIL 601 M LI++ +++ PP+F + G K Y + +E ++ Sbjct: 534 MRPLIDEGFVYVACPPIFGVKVGKKIHYVYPDGRTPEEEILRRTITSLGLDPDEDADELE 593 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + K + R+KGLGEM +QL T MD R L RV I + ++ + Sbjct: 594 ADRPKKKHRGYAVQRYKGLGEMDPAQLASTTMDPKTRILQRVTIED----ASLAERAVRE 649 Query: 662 LMGTKADERFKFIQERASFIDDVGT 686 LMG R +I++ A + Sbjct: 650 LMGPDVAPRRDYIEKHAHDARFLDA 674 >gi|297558991|ref|YP_003677965.1| DNA gyrase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843439|gb|ADH65459.1| DNA gyrase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 645 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 372/653 (56%), Gaps = 22/653 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA SI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AG+A+ IEV+L Sbjct: 3 YDAGSITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGHADAIEVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIP + HP + +E++LTTLHAGGKFD +Y +SGGLHGVG+SVVN Sbjct: 63 DGGVCVADNGRGIPTDLHP-VEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V + ++ Q++ P L K + ++ GT+ITF PD IF F Sbjct: 122 ALSTALEVEIRLHGHVWRQRYEMTAPTGELVK-GESTDETGTQITFWPDGDIFET-TTFS 179 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L + Q A+L+ + ++ G P F++ GL Y++ + Sbjct: 180 FETLARRMQEMAFLNKGLSITIRDER-PEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPA 238 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 + I + + E +G +VE A+ W + + ++ NTI T EGGTHE G R ALT + Sbjct: 239 HASIISFEEEGEGI---SVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRSALTTLV 295 Query: 343 KKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +YA + ++ ++ DD+ I+SV + +P+F GQTKTKL + +A+ V+ Sbjct: 296 NRYARDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVT 355 Query: 401 RDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +NP EA ++ + R+ + RKT + LPGKL+DC Sbjct: 356 NEHLRDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETTSLPGKLSDCQST 415 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 E++IVEGDSAGGSAK RN NQA+LP+RGKILNV + ++I N ++ ++ A Sbjct: 416 NPEECEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRILKNAEVQAIITA 475 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG ++ E LRY KVI+M DADVDG HI +LLLT ++ M L+E +++L +PPL Sbjct: 476 LGTGIHEEFDAEKLRYHKVILMADADVDGQHIRTLLLTLLFRFMKPLVEAGNVYLAAPPL 535 Query: 580 FRIT---QGTKSVYAHDEEHKQKILE----EFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++I +G+ + YA + + +++E + K+ + + + RFKGLGEM A++L +T Sbjct: 536 YKIKWDQKGSDASYAFSDAERDRVIEAGIAQGKRDPRPRDMVQRFKGLGEMNANELWDTT 595 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD ++R LL+V + + + LMG + R FIQ A + + Sbjct: 596 MDPDRRVLLQVSLED----AAQADELFSVLMGEDVESRRAFIQRNAKDVRFLD 644 >gi|91205045|ref|YP_537400.1| DNA topoisomerase IV subunit B [Rickettsia bellii RML369-C] gi|122990939|sp|Q1RK03|PARE_RICBR RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|91068589|gb|ABE04311.1| DNA topoisomerase IV, B subunit [Rickettsia bellii RML369-C] Length = 662 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 326/660 (49%), Positives = 446/660 (67%), Gaps = 12/660 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + ++ Y A I +LEGLEPVR RPGMYIGGTD A+HHL SEV+DN+MDE +A Sbjct: 8 NKEKKTKIINNTYSAKDIEVLEGLEPVRKRPGMYIGGTDLNAMHHLVSEVLDNSMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+GGKF ++ Y+ + Sbjct: 68 GFASIITIKMHQDHSITISDNGRGIPIDNHPKFPNKSALEVILTTLHSGGKFSSNVYQTA 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNAL++ L + V +Q ++ Q +++G L+ L +E + +GT I F P Sbjct: 128 GGLHGVGVSVVNALAEHLEIKVYKQGKLYKQSYAKGEKLTELICEEAPKRLKGTSINFIP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IFGDK F+ ++ ++ +SKAYL V W C+ E + +P+K FP GLK Sbjct: 188 DPEIFGDKIHFNPKKVYELARSKAYLYRGVTIEWECEIEAS--SDVPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL +K+ LI++EIF+G E + + + + I SYCNT+ T GGTH Sbjct: 246 YLSSKITPDDLITTEIFSGNVESEQDGIKLEWAICWQNNDSSAFIQSYCNTVPTPLGGTH 305 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 E GL+ AL RG+K Y E+ NK+ ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 306 EQGLKSALLRGLKAYGEMVGNKKTANLAIEDILETASVVLSIFIAEPTFQGQTKEKLVSQ 365 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + EN ++D FDH+L N A LLE I +E RL ++ ++ ++RK A +KLRLP Sbjct: 366 GVSKPAENIIKDHFDHFLSSNKTIANNLLEHFIAIAEFRLNKKNEKTISRKNATQKLRLP 425 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC++ GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI NN Sbjct: 426 GKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNN 485 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E Sbjct: 486 QAIQDLEIALACGSMKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEDG 545 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 HL+L PPL+R+TQ K+ YA+DEE K K+ ++ K K KIE+ RFKGLGEM+ QLKE Sbjct: 546 HLYLAKPPLYRLTQSNKTYYANDEEEKAKLTDKLSKSSKAKIEVGRFKGLGEMMPMQLKE 605 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA-----SFIDDVG 685 T M KR+LL+V + ++ ++ LMG K ++RF+FI E+A I+++ Sbjct: 606 TTMHPEKRSLLKVTLED----FQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIINELD 661 >gi|239637043|ref|ZP_04678037.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603] gi|239597393|gb|EEQ79896.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603] Length = 666 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 237/654 (36%), Positives = 356/654 (54%), Gaps = 31/654 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++Y SI++LEGLE VR RPGMYIG TD++ LHHL EV+DN++DEV+ GY + I Sbjct: 4 NKQNHYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDEIT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ + +++ DNGRG+P H K T+++I T LHAGGKF Y+ SGGLHGVG Sbjct: 64 VILNQDDSISIEDNGRGMPTGIH--ASGKPTVQVIFTILHAGGKFGQGGYKTSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R I+ Q F G + KE K GT++TF+PDP+IF Sbjct: 122 ASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATELLKEGKTKKTGTKVTFKPDPEIFKA 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L + Q A+L +K + E+ G+K ++ E Sbjct: 182 TTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHY-----EEGIKEFVSYVNE 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ E+ T G V+ A + ++ I S+ N + T +GGTHE G + A Sbjct: 237 GKEVLH-EVTTFTGTSNGI---EVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTA 292 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 +TR YA ++ ++ +D+ I+SV I E +F GQTK+KL + +A+ Sbjct: 293 MTRVFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTKSKLGTSEAR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLP 450 V++ + + YL + + L++ I+ + R RK RE R K L Sbjct: 353 SAVDSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLS 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL EL++VEGDSAGGSAK R+R QA+LPLRGK++N A E I N Sbjct: 413 GKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G ++++ ED Y ++IIMTDAD DGAHI LLLTFF++ M L++ Sbjct: 473 EEINTIIHTIGAGVGNEFKIEDSNYSRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAG 532 Query: 571 HLFLISPPLFRITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +F+ PPL+++ +G K YA ++ K+ ++ K + R+KGLGEM Sbjct: 533 RVFIALPPLYKLEKGKGKSKKVEYAWTDDELDKLQKQLGK----GFSLQRYKGLGEMNPE 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ + RTL+RV++ ++ S K + LMG K R ++I+ F Sbjct: 589 QLWETTMNPDTRTLIRVQVEDEVRSSKR----VTTLMGDKVAPRREWIENHVEF 638 >gi|308189672|ref|YP_003922603.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER] gi|307624414|gb|ADN68719.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER] Length = 637 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 242/648 (37%), Positives = 352/648 (54%), Gaps = 29/648 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD SSI+ L+GLE VR RPGMYIG TD LHHL E++DN++DE +AGYAN I V+L Sbjct: 2 QKYDESSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGYANEISVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 NG + V+DNGRGIPV P KS +E++ T LHAGGKF+ Y+ SGGLHGVG SV Sbjct: 62 TKNGSVKVMDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L VTV R I+ F G + + NK GT + F P+ +IF A Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNTNKHGTMVEFWPNYEIFKR-AK 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L G ++ + + E F + GL ++ ++++ Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISDRETE-------FMYEDGLHAFVDFINDSKN 231 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + +T++ ++ ++ N + S+ N + T +GGTHE GL+ ALT+ Sbjct: 232 ALGDIKTFKETKRDIEVECGFQYTDSY---NETVLSFVNNVKTKDGGTHEIGLKSALTKT 288 Query: 342 IKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 ++A + + + DD+ ILSV I E EF QTK KL + +A+ VE Sbjct: 289 FNEFALEEKALKGKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEE 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLAD 455 + F ++ +N A K+LE + SE R RK R R T K L GKL Sbjct: 349 IVSKNFKIWINENKPLAKKILEKIKRASESRAAARKARVEARSTKNALKEKQILSGKLTP 408 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 I ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A +I N++I Sbjct: 409 AQSKIPAEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGT 468 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G ++ + ++Y KV+IMTDAD DGAHI LLLTFF++ M L+E +++ Sbjct: 469 IINTIGAGVGDEFDLKKVQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIA 528 Query: 576 SPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPLF++T + +YA DE +++L+ E+ R+KGLGEM A QL ET Sbjct: 529 LPPLFKLTSTRGKKEVLYAWDENELRELLQ-LPNFKNA--EVQRYKGLGEMNADQLWETT 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL++V+I + ++ LMG + R ++I + F Sbjct: 586 MNPITRTLVQVKIED----AALAERRVSTLMGDNVEPRKEWINKNVEF 629 >gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera] Length = 707 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 237/680 (34%), Positives = 379/680 (55%), Gaps = 23/680 (3%) Query: 17 QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 + ++ + AF ++S Y + I++LEGL+PVR RPGMYIG T + LHH Sbjct: 39 RNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGSTGLRGLHH 98 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 L E++DNA+DE AG+A+ ++V L + +++ DNGRGIP E HP KS+LE +LT Sbjct: 99 LVYEILDNAIDEAQAGFASKVDVVLLADDSVSITDNGRGIPTELHP-VTKKSSLETVLTV 157 Query: 137 LHAGGKFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 LHAGGKF S Y +SGGLHGVG+SVVNALS+ L VTV R + QK+SRG P++ L Sbjct: 158 LHAGGKFGGASSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLT 217 Query: 195 K---KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 + + +GT I F PD ++F + FD + + A+L+ + + + Sbjct: 218 HRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKD 277 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 EK + E+ + GGL Y++ ++ + + K + ++W Sbjct: 278 PEKN---QYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGISIDVALQWCS--DAY 332 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 + + Y N+I T +GGTH G++ +LTR + + ++ ++ I++ + + + Sbjct: 333 SDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCV 392 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428 +SV + PEF GQTKT+L + + ++ V+ +++ YL +P +L + Sbjct: 393 ISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAA 452 Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 +R + V +K+ ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA Sbjct: 453 LAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 512 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547 +LPLRGKILN+ + +++I +L+ LG + + +++ LRY K+II+TDADVD Sbjct: 513 ILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 572 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHI +LLLTFF++ L ++ +++ PPLF++ +G + Y +D+ +++ + Sbjct: 573 GAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPN 632 Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 I RFKGLGEM+ QL ET MD +R L ++ + + + LMG + Sbjct: 633 --ASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVED----AAEANVVFSSLMGARV 686 Query: 668 DERFKFIQERASF--IDDVG 685 D R + IQ+ AS +D + Sbjct: 687 DFRKELIQKSASTMKLDQLD 706 >gi|225441215|ref|XP_002266668.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 719 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 237/680 (34%), Positives = 379/680 (55%), Gaps = 23/680 (3%) Query: 17 QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 + ++ + AF ++S Y + I++LEGL+PVR RPGMYIG T + LHH Sbjct: 51 RNAASPRAFMSSSIATDAFQESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGSTGLRGLHH 110 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 L E++DNA+DE AG+A+ ++V L + +++ DNGRGIP E HP KS+LE +LT Sbjct: 111 LVYEILDNAIDEAQAGFASKVDVVLLADDSVSITDNGRGIPTELHP-VTKKSSLETVLTV 169 Query: 137 LHAGGKFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE 194 LHAGGKF S Y +SGGLHGVG+SVVNALS+ L VTV R + QK+SRG P++ L Sbjct: 170 LHAGGKFGGASSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLT 229 Query: 195 K---KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 + + +GT I F PD ++F + FD + + A+L+ + + + Sbjct: 230 HRVLPTESTDLQGTHIRFWPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKD 289 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 EK + E+ + GGL Y++ ++ + + K + ++W Sbjct: 290 PEKN---QYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVADGISIDVALQWCS--DAY 344 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 + + Y N+I T +GGTH G++ +LTR + + ++ ++ I++ + + + Sbjct: 345 SDTMLGYANSIRTIDGGTHIDGMKASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCV 404 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEE 428 +SV + PEF GQTKT+L + + ++ V+ +++ YL +P +L + Sbjct: 405 ISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAA 464 Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 +R + V +K+ ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA Sbjct: 465 LAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQA 524 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVD 547 +LPLRGKILN+ + +++I +L+ LG + + +++ LRY K+II+TDADVD Sbjct: 525 ILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVD 584 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHI +LLLTFF++ L ++ +++ PPLF++ +G + Y +D+ +++ + Sbjct: 585 GAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPN 644 Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 I RFKGLGEM+ QL ET MD +R L ++ + + + LMG + Sbjct: 645 --ASYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVVED----AAEANVVFSSLMGARV 698 Query: 668 DERFKFIQERASF--IDDVG 685 D R + IQ+ AS +D + Sbjct: 699 DFRKELIQKSASTMKLDQLD 718 >gi|237732924|ref|ZP_04563405.1| DNA topoisomerase parE [Mollicutes bacterium D7] gi|229383993|gb|EEO34084.1| DNA topoisomerase parE [Coprobacillus sp. D7] Length = 645 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 233/658 (35%), Positives = 361/658 (54%), Gaps = 34/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +A NYD S+I+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE ++G+ Sbjct: 1 MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDARGLHHLVWEIVDNAIDEALSGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGG 153 + I+V++ + + V D+GRG+P H K T E+ILT LHAGGKF+ + Y+ SGG Sbjct: 61 DNIQVTICKDNSIKVTDHGRGMPTGMH--ASGKPTTEVILTILHAGGKFNEDGGYKTSGG 118 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS L VT+ R I+ Q+F G K N+ GT I F PD Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKSNQTGTTIHFMPDS 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ + + + A+L +K ++ E + + GL ++ Sbjct: 179 SIFSV-YEYNFSTISERLMESAFLLKGIKIDLVDERTGKEIS-------YQYDNGLTAFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + ++ I T + V+ A+ + S+ N + T +GGTHE+ Sbjct: 231 EYLNYEKETLNEIINIEGT----NNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHET 286 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R ALTR +YA ++ ++ +D+ I+S+ + E +F GQTK+KL Sbjct: 287 GFRSALTRTFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHYLQFEGQTKSKLG 346 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE--ERLRRRKQREVNRKTAIRK 446 + +A+ V+ + + ++L ++ A L++ +I+ ++ + R+ ++ K ++ Sbjct: 347 TPEARNVVDTVVYEKLTYFLEEHKETADNLVKKMIKAAQVRDAARKAREAARKGKGPRQE 406 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKLA EL++VEGDSAGGSAKQ R+R QA+LPLRGK++N A Sbjct: 407 KILSGKLAPAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMAD 466 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G + + E+D Y KVIIMTDAD DGAHI LLLTFFY+ M DL Sbjct: 467 ILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQILLLTFFYRYMRDL 526 Query: 567 IEQKHLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 I +++ PPL+++++ G K VYA +E+ ++ ++ + + R+KGLGE Sbjct: 527 ITAGKVYIALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGR----GYNVQRYKGLGE 582 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M ASQL ET M+ RTL++V I + ++ LMG K + R ++I++ F Sbjct: 583 MNASQLWETTMNPETRTLIQVSIED----AAIVERRVSVLMGDKVEPRREWIEQNVQF 636 >gi|299541761|ref|ZP_07052084.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1] gi|298725499|gb|EFI66140.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1] Length = 644 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 257/648 (39%), Positives = 374/648 (57%), Gaps = 22/648 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I++LEGLE VR RPGMYIG T K LHHL E++DN++DE +AG+ I+V++ Sbjct: 14 QAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDEALAGFCTDIKVTI 73 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++ V DNGRGIPV K K +E+I+T LHAGGKF Y++SGGLHGVG SV Sbjct: 74 EKENWIRVEDNGRGIPVSIQEKM-GKPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASV 132 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS E V V R+ I KF RG + L + GT F+ DP+IF + Sbjct: 133 VNALSVETIVQVHREGHIHEIKFERGKTVQELMVIGDT-DHNGTTTRFKADPEIFKETTV 191 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + AYL+ +K + ++E + +++ GG+++Y++ +++ Sbjct: 192 YEYDILAHRIRELAYLNRGIKITIADEREEEIRSTT-----YHYEGGIRSYVEHLNQSKD 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 I I EK G TVE A+ + S+ N I T EGGTHESG + ALTR Sbjct: 247 PIHDPIDVL-GEKDGI---TVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTR 302 Query: 341 GIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YA + + ++ +D+ I+SV +P+F GQTKTKL + + + + Sbjct: 303 VINDYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNS 362 Query: 399 ALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 D F+ ++++NP A K++E ++ ++ + RK A+ LPGKLADCS Sbjct: 363 LFSDGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCS 422 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E++IVEGDSAGGSAK R+R QA+LPLRGKILNV A +KI +N +I ++ Sbjct: 423 STNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMI 482 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G ++ E RY K+IIMTDADVDGAHI +LLLTFF++ + LIE ++++ P Sbjct: 483 TAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQP 542 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ QG Y +DEE ++ILE K K + R+KGLGEM A QL ET MD Sbjct: 543 PLYQVKQGKHIEYCYDEETLKEILERLPK--MPKPNVQRYKGLGEMNAEQLWETTMDPEY 600 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+VE++ + + +LMG + + R +FI+E A + ++ Sbjct: 601 RTLLQVELDDAIK----ANQAFERLMGDEVEPRRQFIEENAVYA-NLD 643 >gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale] gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale] Length = 588 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 245/605 (40%), Positives = 363/605 (60%), Gaps = 19/605 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T E+ LHHL E++DN++DE +AGYA+ IE+ + + + V DNGRGIP Sbjct: 1 VRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADHIEIEVLKDNVIRVSDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS V + + Sbjct: 61 VDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSVWYVVEIHKDG 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 I+ QK+ RGIP L++ + N+ GT TF+ DP IF + +D L Q A+L Sbjct: 120 KIYEQKYERGIPAYDLKELGET-NRTGTITTFKADPLIFTETTVYDIETLRTRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + + S ++ Y E F + GG+ Y++ +N+ I +I + E+ G Sbjct: 179 NRGITISLSDSRDENHIYQ----ETFKYDGGIIEYVKFLNQNKKTIHPDIIYFEKEQDGV 234 Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 TVE A+ + + P I S+ N I T EGG HE G ++ALTR I +YA+ + K+ + Sbjct: 235 ---TVEVAMQYVDTYTPNIHSFTNNISTTEGGMHEDGYKMALTRVISRYADDMKAKKDDA 291 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 II +D I+SV EP+F GQTKTKL + + + ++ + +L++NP +A Sbjct: 292 IIGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQVTQEALERFLLENPQQAK 351 Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++E VIE + R+ RK +E+ R+ + + +L KLADC +ELFIVEGDSAG Sbjct: 352 SIVEKVIEATRARVASRKAKELARRKSPLDQLDFASKLADCRSKDPEKSELFIVEGDSAG 411 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQ R+ QA+LPLRGK+LNV A + + N++I++++QA+G ++ LRY Sbjct: 412 GSAKQGRDSEFQAILPLRGKVLNVEKARIDTMLKNKEIINIIQAIGTGISEEFDISKLRY 471 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595 K++IMTDADVDGAHI +LLLTFF++ M LIE H++ PPL++++ G YA+ +E Sbjct: 472 HKIVIMTDADVDGAHIRTLLLTFFFRHMRPLIENGHIYAAQPPLYKVSYGRNVKYAYSDE 531 Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +I + + K + R+KGLGEM QL +T M+ RTLL+++++ + + Sbjct: 532 ELNEITSKLE----TKPTLQRYKGLGEMNYEQLWDTTMNPETRTLLQIQLDDAI----EA 583 Query: 656 QDSIN 660 Sbjct: 584 DQIFT 588 >gi|312137523|ref|YP_004004859.1| DNA gyrase subunit b [Rhodococcus equi 103S] gi|311886862|emb|CBH46170.1| DNA gyrase subunit B [Rhodococcus equi 103S] Length = 678 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 245/689 (35%), Positives = 367/689 (53%), Gaps = 50/689 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A S+ Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ +EV++ +G + VVD+GRGIPV H T+E+++T LHAGGKFD+ Y +SGG Sbjct: 62 ASKVEVTMLEDGGIQVVDDGRGIPVAMH--ASGAPTVEVVMTQLHAGGKFDSDAYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS ++ V + +SQ + P ++ + + F DP Sbjct: 120 LHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT--TVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF ++ + + Q A+L+ + + ++ ++ Sbjct: 178 EIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTAEAPKTATET 236 Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +++PGGL+ Y++ + I + + + G +E A+ Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH---ELEIAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT +KKY + + + DD+ Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + + + V+ A + H+ NP +A ++ + Sbjct: 354 EGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R RK RE V RK+A LPGKLADC N E++IVEGDSAGGSAK R Sbjct: 414 SSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LRY K+++M Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDICKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600 DADVDG HIA+LLLT ++ M L+EQ H++L PPL+++ +G +A+ + + + Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQKGAAPDFAYSDRERDGL 593 Query: 601 LEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 LE GK KI I R+KGLGEM A +L ET MD + R L +V ++ Sbjct: 594 LEAGLAAGK-KINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDD----AAAAD 648 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI A + + Sbjct: 649 ELFSVLMGEDVEARRSFITRNAKDVRFLD 677 >gi|291517729|emb|CBK71345.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum F8] Length = 712 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 250/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 17 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ P Sbjct: 77 STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 135 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 196 HPTAPLKQDEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y+ ++ R E E Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTITYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC N ELFI Sbjct: 435 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712 >gi|213690934|ref|YP_002321520.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522395|gb|ACJ51142.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 709 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 250/702 (35%), Positives = 369/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 14 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 73 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IEVS+ + + VVD+GRGIPV+ P Sbjct: 74 STGPRGLHHLVYEIVDNSVDEALAGYASHIEVSILPDNGIRVVDDGRGIPVDEVP-GEGV 132 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 133 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 192 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 193 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 251 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y++ ++ R E E Sbjct: 252 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVEYLVKVRKATPVEEDVISFE 311 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 312 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 371 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 372 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 431 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC + ELFI Sbjct: 432 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 491 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 492 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 551 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 552 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 611 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 612 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 671 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 672 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 709 >gi|237733416|ref|ZP_04563897.1| DNA gyrase subunit B gyrB [Mollicutes bacterium D7] gi|229383451|gb|EEO33542.1| DNA gyrase subunit B gyrB [Coprobacillus sp. D7] Length = 641 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 363/655 (55%), Gaps = 19/655 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +YD S I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA Sbjct: 1 MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSIRGLHHLVWEIVDNSIDEALAGYA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V L + + V+D+GRG+P H K ST+E I T LHAGGKF Y++SGGL Sbjct: 61 SHIRVILKDDDVVQVIDDGRGMPTGTHAK-TGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS+ L V V R + Q+F G + K + GT +TF+ D Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDSDITGTIVTFKADKI 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF + +D L + + A+L+ ++ + ++ +Y+ GG+K Y+ Sbjct: 180 IFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHE-----YYYEGGIKEYVA 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ I EI + T+E + + + I S+CN I T EGGTHE G Sbjct: 235 YINKNKTPIHEEIIYVE---DMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEG 291 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R+ALTR I YA+ K ++ DD+ I+SV +P++ GQTKTKL + + Sbjct: 292 FRLALTRVINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 ++ N + D +L++NP A +++ I ++ + RK + LP Sbjct: 352 VRKIASNIISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS A E+FIVEG+SAGGSAK R+R QA+LPLRGKILNV + EKI N Sbjct: 412 GKLADCSSKDASECEIFIVEGNSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ A G ++ + LRY K++IMTDADVDG HI L+LTF Y+ + L+E Sbjct: 472 AEIRSMITAFGTGIGEEFNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ + G Y + +E + + + K I R+KGLGEM A QL E Sbjct: 532 FVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGE--GAKYSIQRYKGLGEMNAEQLWE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD KR L ++++++ + + + LMG K + R +FIQE A ++ D+ Sbjct: 590 TTMDPEKRILNQIDLDEAM----EADMIFDMLMGEKVEPRREFIQENAKYVTDLD 640 >gi|300780154|ref|ZP_07090010.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium genitalium ATCC 33030] gi|300534264|gb|EFK55323.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium genitalium ATCC 33030] Length = 686 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 257/691 (37%), Positives = 366/691 (52%), Gaps = 60/691 (8%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NYDASSI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGYA+ +EV+L Sbjct: 7 NYDASSITILEGLEAVRKRPGMYIGSTGSRGLHHLVWEVVDNSVDEAMAGYADKVEVTLL 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + VVDNGRGIPVE HP T+++++T LHAGGKFD+ +Y +SGGLHGVGISVV Sbjct: 67 ADGGVQVVDNGRGIPVEMHP--SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS + + R + Q F+ IP +E GT I F PD +IF F Sbjct: 125 NALSTRVEADIKRDGKHWYQNFTNAIPEELVE--GDNARGTGTSIRFWPDAEIFETV-EF 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAE----------------------------- 253 D + + Q A+L+ + ++ E Sbjct: 182 DYDIIARRLQEMAFLNKGLTITLKDERVSDEELELEAIAEEGDTAQVVEGDSFADEDVVD 241 Query: 254 -----------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 K +K +++P GL Y+ ++ I I + + + Sbjct: 242 KQEDGDVAPTSKKKREKKVTYHYPNGLVDYVNYLNRTKTAIHPTIVGFEAKGTDH---EL 298 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + ++ NTI T EGGTHE G R ALT + +YA + + ++ Sbjct: 299 EIAMQWNGGFKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAREHKLIKDKDPNLTG 358 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD ++SV + +P+F GQTKTKL + + + V+ A+ + + + NP EA ++ Sbjct: 359 DDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEAKVII 418 Query: 420 EWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + + S+ R RK RE RK+A LPGKLADC +ELFIVEGDSAGGSA Sbjct: 419 KKAVSSSQAREAARKARESVRRKSATDLGGLPGKLADCRSKDPVASELFIVEGDSAGGSA 478 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQ R+ QA+LPLRGKILNV A +++ +N ++ ++ ALG ++ LRY K+ Sbjct: 479 KQGRDSMYQAILPLRGKILNVEKARLDRVLSNNEVQAIITALGTGINDEFDISKLRYHKI 538 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHK 597 ++M DADVDG HIA+LLLT Y+ M +LI H+FL +PPL+++ + YA+ + + Sbjct: 539 VLMADADVDGQHIATLLLTLLYRLMPELIGDGHVFLANPPLYKLKWHKGEPGYAYSDAER 598 Query: 598 QKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 LEE G+ I R+KGLGEM +L ET +D R L RVE+ + Sbjct: 599 DAELEEGLNEGRKINTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELED----AQR 654 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI +A + + Sbjct: 655 ADELFSILMGDDVAARRSFITRKAKDVRFLD 685 >gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor] gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor] Length = 729 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 238/670 (35%), Positives = 375/670 (55%), Gaps = 25/670 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 S A + + Y A+++++LE L+ VR RPGMYIG T + LHHL E++DNA+ Sbjct: 73 ASTTASEAMHEKRVAAEYTAANVQVLEALDGVRTRPGMYIGSTGPRGLHHLVYEILDNAV 132 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144 DE AG+A+ I+V L + ++V DNGRGIP + HP+ KS +E +LT +HA Sbjct: 133 DEGQAGHASKIDVVLHDDNSVSVTDNGRGIPTDMHPQ-TKKSCVETVLTLMHAGGKFGGS 191 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRN 201 S Y +SGGLHGVG+SVVNALS+ L VTV R + Q +SRG P +P + + Sbjct: 192 KSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGNKYRQSYSRGKPTTPLSSITLTGETSP 251 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 ++GT I F PD IF FD + + A+L+ + + E+ + Sbjct: 252 RQGTSIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTITLT-----KEEGHTVQHN 306 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321 E+ + GGL Y++ ++ + + E G V + + + Y N+ Sbjct: 307 EYCYAGGLVEYVKWLNTDKKPLHDP-IAFRKELDGIT-VDVSLQWSSDSYSDTVLGYANS 364 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T +GGTH GL+ +LTR I +A+ ++ + I++ + + ++SV + PEF Sbjct: 365 IRTIDGGTHIDGLKASLTRTINNFAKKSKTIKDKDITLSGEHVREGMTCVISVKVPSPEF 424 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438 GQTKT+L + + +R VE A+++ YL +P +L + + L ++ RE V Sbjct: 425 EGQTKTRLGNPEVRRIVEQAVQENLTEYLELHPDVLDSILSKSLNALKASLAAKRARELV 484 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 K+ ++ +PGKLADC+ +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN Sbjct: 485 RSKSVLKSSSIPGKLADCASTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 544 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557 + + N++I +L+ ALG + + +++ LRY K++I+TDADVDGAHI +LLLT Sbjct: 545 IERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 604 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ L ++ +++ PPL+++ +G ++ Y +D+ ++I+ F + I RF Sbjct: 605 FFFRYQRALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPN--ASYHIQRF 662 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM+ QL ET MD +R L ++++ + + LMG++ + R + IQE Sbjct: 663 KGLGEMMPVQLWETTMDPERRLLKQLKVED----AAEANVVFSSLMGSRVEYRKQLIQEA 718 Query: 678 ASFI--DDVG 685 AS I D + Sbjct: 719 ASTISMDQLD 728 >gi|329944735|ref|ZP_08292814.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529871|gb|EGF56761.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 675 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 251/679 (36%), Positives = 372/679 (54%), Gaps = 33/679 (4%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IEV++ +G + V DNGRGIPV+ HP ++ T+E+++T LHAGGKF Y +SGG Sbjct: 62 CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHRPTVEVVMTILHAGGKFGGGGYAVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS + V RQ ++ F+ G K + GT TF PDP Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGEATEDTGTTQTFYPDP 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 IF FD L + Q A+L+ ++ + ++ + G Sbjct: 181 SIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERVGVQDAGDEITGDDSAPDAPEVGF 239 Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313 + + + GL+ Y+ +++ L+ EI + E+ TH ++E A+ W Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQTLGETHSISLEIAMQWTSSYSE 299 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + +Y NTI T EGGTHE G R ALT + KYA +R ++ DD+ ++S Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDRGLLKERDDNLTGDDIREGLTAVIS 359 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F GQTKTKL + +A+ V+ + +L +P +A ++ + + RL Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARLA 419 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE R+ + +PGKL DCS IA +E+FIVEGDSAGGSA R+ +QA++ Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKIAEESEIFIVEGDSAGGSAVGGRDPEHQAIM 479 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG H Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDLTKLRYGKIVIMADADVDGQH 539 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609 IA+LLLT ++ M LIE H ++ PPL+R+ + +A+ + + K+L + G+ Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAVGQDKGR 599 Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655 Query: 667 ADERFKFIQERASFIDDVG 685 ++R FIQ AS + + Sbjct: 656 VEQRRSFIQRNASDVRFLD 674 >gi|317482363|ref|ZP_07941383.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA] gi|316916243|gb|EFV37645.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA] Length = 712 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 17 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P Sbjct: 77 STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y+ ++ R E E Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC + ELFI Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 494 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712 >gi|116629641|ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323] gi|116095223|gb|ABJ60375.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323] Length = 661 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 240/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AGY Sbjct: 11 AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 70 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGGL Sbjct: 71 KEINVTIHKDNSITVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 128 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 129 HGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ + + + A+L VK + ++E ++F + G+K+++ Sbjct: 189 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDKFLYEDGIKSFV 241 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332 E++ + ++F ++ G VE+A + + E S+ N + T +GG+HE+ Sbjct: 242 SYLNEDKDTMG-DVFYFSGKQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 297 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 298 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 357 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446 + A+ V++ + + +YL++N A L++ + + R +K R+ +R +K Sbjct: 358 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 417 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 418 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 477 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M + Sbjct: 478 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 537 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +E +++ PPL+++ +G K YA +E + ++ K + RFKGLGE Sbjct: 538 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLGE 593 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 594 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 647 >gi|313897377|ref|ZP_07830920.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2] gi|312957747|gb|EFR39372.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2] Length = 643 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 236/650 (36%), Positives = 358/650 (55%), Gaps = 29/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + YD SSI+IL+GL+ VR RPGMYIG TD + LHHL E++DN++DE + G+ + I + Sbjct: 2 AENAYDGSSIQILDGLDAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEALNGHGDTIRI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGVG 158 +++ + + V D GRG+PV+ H T+++I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIEKDNVICVEDEGRGMPVDMH--ASGVPTVQVIYTVLHAGGKFSTEGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ + VTV R I+ FS G + NK G+++ F+ D +F Sbjct: 120 ASVVNALSEWVEVTVHRDGKIYRMSFSDGGREVSKLEVIGKTNKTGSKVRFKADKTMFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + ++ + Q A+L +K ++E E+ E +++ GL +++ E Sbjct: 180 T-KYSFHQIAERAQEDAFLLEGLKLVVRDEREGKERE-----EVYHYEQGLVAFMEYLHE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + + ++ V+ A + +E I S+ N + T +GGTHE+G + A Sbjct: 234 DKQVFHKPVAFSGM----SNEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA ++ + D+ ILS+ + E +F GQTK KL + +A+ Sbjct: 290 FTKVFNEYARKNGLLKEKDKNFEGSDVREGLTIILSLGVPENLLQFEGQTKGKLGTAEAK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450 V++ + + +L +N A L++ + S R RK RE RK R L Sbjct: 350 AAVDSIVSEKLSFFLEENKELAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA A EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A I N Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG + + ED Y KVIIMTDAD DGAHI LLLTFFY+ M +LIEQ Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++ +G + YA +E ++ + F K + R+KGLGEM A QL + Sbjct: 530 MVYIALPPLYKLQKGKEIQYAWTDEELDELRKTFPK----GFSLQRYKGLGEMNADQLWD 585 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M RTL++V I+ + + ++ LMG KA+ R +I+E SF Sbjct: 586 TTMCPETRTLIQVTIDDAVV----AEKRVSVLMGDKANLRRDWIEENVSF 631 >gi|184199651|ref|YP_001853858.1| DNA gyrase subunit B [Kocuria rhizophila DC2201] gi|183579881|dbj|BAG28352.1| DNA gyrase subunit B [Kocuria rhizophila DC2201] Length = 686 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 243/690 (35%), Positives = 354/690 (51%), Gaps = 45/690 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S Y AS I +LEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGY Sbjct: 2 ATEDSPQHEYGASDITVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEVVDNSVDEALAGYC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV+L +G + V DNGRGIPV+ HP K T+E+++T LHAGGKF Y +SGGL Sbjct: 62 DHIEVTLQADGGVRVSDNGRGIPVDMHP-TEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVGISVVNALS ++ V RQ ++ F+ G K + + GT F PD + Sbjct: 121 HGVGISVVNALSRQVDTEVRRQGHVWRMSFANGGRPQGELVKGEATEETGTTQVFYPDAE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI----------------- 257 IF FD L Q A+L+ ++ + ++ E Sbjct: 181 IFETV-DFDFETLRARFQQMAFLNKGLRITLTDERASDETGEEIAGDTPSDASGPLEGQD 239 Query: 258 -------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVE 303 + + + GL Y+ ++ E + ++E Sbjct: 240 GGTAGGDDAAAAGARQVVYCYEDGLLDYVTFLNSSKKADLIHQDVISLEVDDPDKKMSLE 299 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISD 360 A+ W + +Y NTI T EGGTHE G R ALT I +YA + + ++ + Sbjct: 300 LAMQWTTAFNESVHTYANTINTHEGGTHEEGFRTALTTLINRYARENKLLRDKDDNLTGE 359 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ ++S+ + EP+F GQTKTKL + +A+ V+ + + F +L +NP A ++ Sbjct: 360 DVREGLTAVISIKLSEPQFEGQTKTKLGNSEAKTFVQREMFELFGAWLERNPNPAKDIIR 419 Query: 421 WVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I S+ RL RK RE R+ + +PGKL DCS +E++IVEGDSAGGSA Sbjct: 420 KAIYASQARLAARKARETTRRKGLLESGGMPGKLKDCSSKDPTLSEIYIVEGDSAGGSAV 479 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 Q R+ ++QA+LPLRGKILNV A ++ +N ++ ++ A G + + RY K++ Sbjct: 480 QGRDPAHQAILPLRGKILNVERARLDRALSNAEVQSMITAFGAGIGDDFDIDKARYHKIV 539 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598 +M DADVDG HI +LLLT ++ M LIE +++L PPL+RI Y + + Sbjct: 540 LMADADVDGQHITTLLLTLLFRFMRPLIEHGYVYLAQPPLYRIKWSNAPHDYVFSDAERD 599 Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 L + + + I R+KGLGEM ++L ET MD RTLL+V ++ Sbjct: 600 AALAKGLAENRRLPKDNGIQRYKGLGEMDYTELWETTMDPEHRTLLQVTMDD----AAAA 655 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FIQ+ A I + Sbjct: 656 DQIFSVLMGEDVESRREFIQQNAKDIRFLD 685 >gi|23335943|ref|ZP_00121174.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bifidobacterium longum DJO10A] Length = 712 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 249/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 17 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P Sbjct: 77 STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y+ ++ R E E Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC N ELFI Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712 >gi|306823992|ref|ZP_07457366.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium dentium ATCC 27679] gi|304552990|gb|EFM40903.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium dentium ATCC 27679] Length = 704 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 251/705 (35%), Positives = 376/705 (53%), Gaps = 28/705 (3%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DL + +S ++++ + + + + + ++YDAS +R+LEGLE VR+RPG Sbjct: 6 SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPG 65 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ P Sbjct: 66 MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184 Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 + P + L K E + GT +TF D KIF +D L Q A+L+ + Sbjct: 185 YVDQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGL 243 Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 K + +E E + + + G+K Y+ +++R E Sbjct: 244 KLSLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVGYLVKSRKATPVEEDVI 303 Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 E + + E A+ W + ++ NTI T EGGTHE G R ALT I +YA Sbjct: 304 DFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYARE 363 Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 364 KNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 423 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465 + +P EA +++ IE S R+ +K RE R+ +I +P KL DC N E Sbjct: 424 WFDAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECE 483 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 LFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ ++ I L+ A+G Sbjct: 484 LFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYG 543 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 544 EDFDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 603 Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + + + + ++L E K G+ I R+KGLGEM +L ET MD R L Sbjct: 604 KGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILK 663 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +V+I ++ + LMG + + R FIQ A+ + + Sbjct: 664 QVQIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 704 >gi|327183630|gb|AEA32077.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1118] Length = 648 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K ++K GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKGYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K+++ Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E+A + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDGI---EIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G K YA +E L E +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|227547507|ref|ZP_03977556.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212022|gb|EEI79918.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 712 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 249/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 17 LADETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P Sbjct: 77 STGPRGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGV 135 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQ 195 Query: 188 IPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P +PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 196 HPTAPLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISL 254 Query: 246 SCDKEI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++E E + + + G+K Y+ ++ R E E Sbjct: 255 TDERENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGI 374 Query: 351 -NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC N ELFI Sbjct: 435 AHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFI 494 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712 >gi|238854274|ref|ZP_04644618.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4] gi|282851154|ref|ZP_06260521.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1] gi|311110716|ref|ZP_07712113.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22] gi|238833085|gb|EEQ25378.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4] gi|282557686|gb|EFB63281.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1] gi|311065870|gb|EFQ46210.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22] Length = 652 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 241/658 (36%), Positives = 355/658 (53%), Gaps = 33/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AGY Sbjct: 2 AKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRHGLNQLVYEIVDNSVDEAMAGYG 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D GRG+P H T+E+ILT LHAGGKF Y+ SGGL Sbjct: 62 KEINVTIHKDNSITVQDFGRGMPTGMH--ASGIPTIEVILTVLHAGGKFTEKNYQTSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L V V R + ++F G P+ L+ K ++K GT ITF+PD Sbjct: 120 HGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF ++ + + + A+L VK + ++E +EF + G+K+++ Sbjct: 180 TIFST-TTYNYETIQERIRESAFLLKGVKFTLTDEREPE------HHDEFLYEDGIKSFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332 E++ + ++F ++ G VE+A + + E S+ N + T +GG+HE+ Sbjct: 233 SYLNEDKDTMG-DVFYFSGKQNGI---EVEFAGQYNDGYSENFVSFVNNVRTADGGSHEA 288 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R T+ YA+ + D +LSV I E EF GQTK KL Sbjct: 289 GARSGFTKAFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLG 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446 + A+ V++ + + +YL++N A L++ + + R +K R+ +R +K Sbjct: 349 TPQARSVVDSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKK 408 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 409 EILSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 468 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G S ++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M + Sbjct: 469 IFKNEEINTMIHTIGAGVGSDFQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPM 528 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +E +++ PPL+++ +G K YA +E + ++ K + RFKGLGE Sbjct: 529 VEAGRVYIALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGK----GFALQRFKGLGE 584 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL ET M+ RTL+RV+I+ + + + LMG K R K+I E F Sbjct: 585 MNADQLWETTMNPETRTLIRVKIDD----AQLAEKRVTTLMGDKVAPRRKWIDENVKF 638 >gi|225388933|ref|ZP_03758657.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme DSM 15981] gi|225044986|gb|EEG55232.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme DSM 15981] Length = 639 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 249/660 (37%), Positives = 356/660 (53%), Gaps = 35/660 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y+A SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG+ + + V Sbjct: 2 ANQTYNAESITVLEGLEAVRKRPGMYIGSVGTKGLNHLIYEIVDNAVDEHLAGFCSKVWV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV DNGRGIPVE H K S ++L TLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVRDNGRGIPVELHKK--GVSAERVVLATLHAGGKFDNEAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214 SVVNALS + V V R I+ + +G+P+ PLE K R GT+I F PD + Sbjct: 120 SVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKTRE-TGTQINFLPDDE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A L AYL+ + ++ + G E+ ++ P G+ +Y++ Sbjct: 179 IFER-TRFKADWLKSRLHETAYLNPNLMIFYANKRS-----GESEQITYHEPEGIVSYVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 ++ + I+ K + VE A+ + + E +CN I T EGGTH +G Sbjct: 233 ELNTGKTAVHDPIYF----KGTVDKVEVEVALQFVDTFEENILGFCNNIFTQEGGTHLAG 288 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T I YA ++ + D +++V +P F GQTKTKL S D Sbjct: 289 FKTKFTAMINSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASAD 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + V + D Y +N ++ + ++ R K + + G Sbjct: 349 ATKAVFAVVGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAKTNMLTRSKFSFDSNG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N Sbjct: 409 KLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMDKVLANA 468 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ A GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 469 EIKTMINAFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528 Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 H+++ PPLF++ + + Y +DE+ LE +++ G + R+KGLGEM A Sbjct: 529 YDGHVYIAMPPLFKVIPKKGEEQYLYDEKE----LERYRRTHTGDFTLQRYKGLGEMDAG 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET +D +R L +VEI + + T+ LMG++ R +FI E A + + Sbjct: 585 QLWETTLDPERRVLKQVEIEDARMASEITE----MLMGSEVAPRREFIYEHADEAE-IDA 639 >gi|171741730|ref|ZP_02917537.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC 27678] gi|283454964|ref|YP_003359528.1| DNA gyrase [Bifidobacterium dentium Bd1] gi|171277344|gb|EDT45005.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC 27678] gi|283101598|gb|ADB08704.1| DNA gyrase [Bifidobacterium dentium Bd1] Length = 704 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 251/705 (35%), Positives = 376/705 (53%), Gaps = 28/705 (3%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DL + +S ++++ + + + + + ++YDAS +R+LEGLE VR+RPG Sbjct: 6 SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPG 65 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ P Sbjct: 66 MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184 Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 + P + L K E + GT +TF D KIF +D L Q A+L+ + Sbjct: 185 YVDQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGL 243 Query: 242 KTCWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 K + +E E + + + G+K Y+ +++R E Sbjct: 244 KLSLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVDYLVKSRKATPVEEDVI 303 Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 E + + E A+ W + ++ NTI T EGGTHE G R ALT I +YA Sbjct: 304 DFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYARE 363 Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 364 KNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 423 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465 + +P EA +++ IE S R+ +K RE R+ +I +P KL DC N E Sbjct: 424 WFDAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECE 483 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 LFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ ++ I L+ A+G Sbjct: 484 LFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYG 543 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 544 EDFDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 603 Query: 586 TKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + + + + ++L E K G+ I R+KGLGEM +L ET MD R L Sbjct: 604 KGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILK 663 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +V+I ++ + LMG + + R FIQ A+ + + Sbjct: 664 QVQIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 704 >gi|291550229|emb|CBL26491.1| DNA topoisomerase IV subunit B [Ruminococcus torques L2-14] Length = 640 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 245/660 (37%), Positives = 354/660 (53%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG+ + I+ Sbjct: 2 AGNNTYDAGSIAVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCSEIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G TV DNGRG+PV+ H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEKDGSATVSDNGRGVPVDMHQK--GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V ++R + ++ RGIP+ LE K K R GT + F PD Sbjct: 120 SSVVNALSTYMDVKISRDGFVHHDRYERGIPVIELEDGLLPKIGKTRK-TGTTVNFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + AYL+ + + +E + E ++ P G+ ++ Sbjct: 179 TIFEK-TKFKAEEVKSRLHETAYLNPNLTIVFDDKREGSV-----EHIVYHEPEGIIGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 Q + ++ K E G VE + + E + + +CN I EGGTH + Sbjct: 233 QDLNRKKEVLHDP-VYFKGEADGI---EVEVTLQYVNEFHENVLGFCNNIYNAEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + +YA ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 289 GFKTTFTTVMNQYAREIGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + V + + +N +L + ++ R K + Sbjct: 349 DAAKAVSKVTGEEIVRFFDRNLDTLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDPKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + + Y +D+ K LE ++K G + R+KGLGEM A Sbjct: 529 IFEGHVYIAMPPLYKAMPKSGEEEYLYDD----KALERYRKTHTGPFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET +D +R L RVEI + T+ LMGT+ R FI E A+ + + Sbjct: 585 EQLWETTLDPERRMLKRVEIEDARMASSVTE----MLMGTEVPPRRNFIYENATEAE-LD 639 >gi|160901666|ref|YP_001567247.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95] gi|160359310|gb|ABX30924.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95] Length = 641 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 252/655 (38%), Positives = 377/655 (57%), Gaps = 25/655 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 Y + I++L+GLEPVR+RPGMYIG T + L+H+ E+IDNA+DE + G+ + I V Sbjct: 2 VEKTYSGNDIKVLKGLEPVRLRPGMYIGSTGKTGLNHMVYEIIDNAIDEHVNGFCDTIRV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ + + V DNGRGIPV+ HP NK+TLE+++T+LHAGGKFD Y++SGGLHGVG Sbjct: 62 TLNEDDSIEVEDNGRGIPVDIHP-TENKNTLELVMTSLHAGGKFDKKAYKVSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ + V V R I+ QK++RG+P + + + +K GT + F PD +IF D Sbjct: 121 SVVNALSEYMEVKVYRDGKIYYQKYARGVPQTDVIIVGET-DKSGTVVKFLPDKEIFDDG 179 Query: 220 AGFDAARLLK-MTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +RL++ + A+L+ +K + K K+EF+F GGL ++ L+ Sbjct: 180 DITVESRLIENRLKEIAFLNPNLKVIFEDRKR-------DYKQEFHFLGGLNEFINYILK 232 Query: 279 NRSLI---SSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 R + G K VE A + + S+ N I T +GG HESG Sbjct: 233 RRKMNSISEPVYMYGSYQYSKVESEIQVEAAFVYTDSEESEVISFVNNIRTIDGGEHESG 292 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR +YA ++ + +D+ + I+ + + P F GQTK +L S Sbjct: 293 FKQALTRLSNEYARKYNVLKEKDENFSGEDVREGLLAIIHIKMPNPVFEGQTKGRLGSKV 352 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLP 450 A+ V + Y N EA + E + ++RL ++ R+ RKT LP Sbjct: 353 AREAVNQITTEKLSLYFDANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLP 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ + +ELFIVEGDSAGG+AKQAR+R QA+LPLRGKILN K+ N Sbjct: 413 GKLADCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILPLRGKILNAEKTDFLKLLKN 472 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +Q+ +++ ALG ++ LRY K+IIMTDADVDGAHI +L+LT F++ M LIE+ Sbjct: 473 EQVSNIIIALGTGIGEEFNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRSLIEEG 532 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+R G + Y + +E +++ KK+G K I R+KGLGEM QL+E Sbjct: 533 YVYIAQPPLYRFEIGKQHFYLYSDEELEELK---KKYGDKKWRIQRYKGLGEMNPDQLRE 589 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T MD + R L+++++ L+ ++ I LMG R +FI+ A+ + ++ Sbjct: 590 TTMDRDTRKLVKIKMED----LEMAEEMIEILMGYDPSIRREFIESNANKVKELD 640 >gi|309801982|ref|ZP_07696096.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022] gi|308221430|gb|EFO77728.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022] Length = 698 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 251/703 (35%), Positives = 376/703 (53%), Gaps = 28/703 (3%) Query: 6 IDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMY 65 DL + +S ++++ + + + + + ++YDAS +R+LEGLE VR+RPGMY Sbjct: 2 ADLDADSLNESAENTQEDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRIRPGMY 61 Query: 66 IGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP 125 IG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ P Sbjct: 62 IGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP-GE 120 Query: 126 NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFS 185 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 121 GVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYV 180 Query: 186 RGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 P + L K E + GT +TF D KIF +D L Q A+L+ +K Sbjct: 181 DQKPTARLAKGEPMAEGESTGTSVTFWADGKIFET-TTYDFETLRNRFQQMAFLNKGLKL 239 Query: 244 CWSCDKEI-----------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292 + +E E + + + G+K Y+ +++R E Sbjct: 240 SLTDLREPDQAGDEVAGELDETETKHQTVTYQYNEGIKDYVGYLVKSRKATPVEEDVIDF 299 Query: 293 E-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 E + + E A+ W + ++ NTI T EGGTHE G R ALT I +YA Sbjct: 300 EAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLINRYAREKN 359 Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 360 ILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWF 419 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467 +P EA +++ IE S R+ +K RE R+ +I +P KL DC N ELF Sbjct: 420 DAHPSEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELF 479 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSAGGSA Q RN QA+LPLRGKILN A +++ ++ I L+ A+G Sbjct: 480 IVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGYGED 539 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 540 FDLSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKG 599 Query: 588 SV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643 + + + + + ++L E K G+ I R+KGLGEM +L ET MD R L +V Sbjct: 600 AHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQV 659 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +I ++ + LMG + + R FIQ A+ + + Sbjct: 660 QIED----AAAADETFSMLMGDEVEPRRLFIQRNANKVSWIDA 698 >gi|225352385|ref|ZP_03743408.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156892|gb|EEG70261.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 705 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 251/706 (35%), Positives = 378/706 (53%), Gaps = 29/706 (4%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DL + +S ++++ + + + + A ++YDAS +R+LEGLE VR+RPG Sbjct: 6 SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPG 65 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ P Sbjct: 66 MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS +++ V RQ ++Q Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVNIEVRRQGFHWTQT 184 Query: 184 FSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 + P + L K E + GT +TF D IF +D L Q A+L+ + Sbjct: 185 YIDQKPTARLAKGEPMGEDESTGTSVTFWADGAIFET-TTYDFETLRNRFQQMAFLNKGL 243 Query: 242 KTCWSCDKEIA----------EKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFT 289 K + +E + P+ + + + G+K Y+ +++R E Sbjct: 244 KLSLTDLREPDQAGDEVAGESDDNAEPKHQTVTYQYNDGIKDYVDYLVKSRKATPVEPDV 303 Query: 290 GKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 E + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 304 IDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAR 363 Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 364 EKNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLG 423 Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGT 464 + +P EA +++ IE S RL +K RE R+ +I +P KL DC N Sbjct: 424 DWFDSHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEEC 483 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ ++ I L+ A+G Sbjct: 484 ELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGY 543 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 544 GEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKW 603 Query: 585 GTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + + + + + ++L E K G+ I R+KGLGEM +L ET MD + R L Sbjct: 604 TKGAHDFVYTDAERDRVLAEGKSAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRIL 663 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +V+I ++ + LMG + + R FIQ A + + Sbjct: 664 KQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 705 >gi|212715155|ref|ZP_03323283.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM 16992] gi|212661836|gb|EEB22411.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM 16992] Length = 705 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 252/706 (35%), Positives = 377/706 (53%), Gaps = 29/706 (4%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DL + +S ++++ + + + + A ++YDAS +R+LEGLE VR+RPG Sbjct: 6 SVADLDADSLNESAENTQEDQIQNDQLEDAQLDDTLAPEHYDASDLRVLEGLEAVRIRPG 65 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ P Sbjct: 66 MYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDEVP- 124 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q Sbjct: 125 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 184 Query: 184 FSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 + P S L K E + GT +TF D IF +D L Q A+L+ + Sbjct: 185 YINQKPTSRLLKGEPMGEDESTGTSVTFWADGAIFET-TTYDFEILRNRFQQMAFLNKGL 243 Query: 242 KTCWSCDKEIA----------EKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFT 289 K + +E + P+ + + + G+K Y+ +++R E Sbjct: 244 KLSLTDLREPDQAGDEVAGDGDDNAEPKHQTVTYQYNDGIKDYVDYLVKSRKATPIEPDV 303 Query: 290 GKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 E + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 304 IDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAR 363 Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 364 EKNILKDKDENLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLG 423 Query: 406 HYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGT 464 + +P EA +++ IE S RL +K RE R+ +I +P KL DC N Sbjct: 424 DWFDSHPSEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEEC 483 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ ++ I L+ A+G Sbjct: 484 ELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSETIESLITAVGGGY 543 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 544 GEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKW 603 Query: 585 GTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + + + + + ++L E K G+ I R+KGLGEM +L ET MD + R L Sbjct: 604 TKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRIL 663 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +V+I ++ + LMG + + R FIQ A + + Sbjct: 664 KQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 705 >gi|309775455|ref|ZP_07670458.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916844|gb|EFP62581.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 643 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 234/650 (36%), Positives = 356/650 (54%), Gaps = 29/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + YD SSI+IL+GL+ VR RPGMYIG TD + LHHL E++DN++DE + G+ + I + Sbjct: 2 AENAYDGSSIQILDGLDAVRKRPGMYIGSTDSRGLHHLVWEIVDNSIDEALNGHGDTIRI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD-NSTYEISGGLHGVG 158 +++ + + V D GRG+PV+ H +++I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIEKDNVICVEDEGRGMPVDMH--ASGVPAVQVIYTVLHAGGKFSTEGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ + VTV R +I+ FS G + +K G+++ F+ D +F Sbjct: 120 ASVVNALSEWVEVTVYRNGSIYRMNFSDGGSKVSKLEVIGKTSKTGSKVRFKADKTMFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + ++ + Q A+L +K ++E E+ E +++ GL +++ E Sbjct: 180 T-KYSFHQIAERAQEDAFLLEGLKLVVRDEREGKERE-----EVYHYEQGLVAFMEYLHE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + + + V+ A + +E I S+ N + T +GGTHE+G + A Sbjct: 234 DKQVFHKPVAFSGM----ANEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + + D+ ILS+ I E +F GQTK KL + +A+ Sbjct: 290 FTKVFNEYARKNGLLKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTAEAK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450 V++ + + ++L +N A L++ + S R RK RE RK + L Sbjct: 350 AAVDSIVSEKLSYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA A EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A I N Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG + + ED Y KVIIMTDAD DGAHI LLLTFFY+ M +LIEQ Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++ +G YA +E ++ + F K + R+KGLGEM A QL + Sbjct: 530 MVYIALPPLYKLQKGKDIQYAWTDEELDELRKTFPK----GFSLQRYKGLGEMNADQLWD 585 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M RTL++V I+ + + ++ LMG KA+ R +I+E SF Sbjct: 586 TTMCPETRTLIQVTIDDAVV----AEKRVSVLMGDKANLRRNWIEENVSF 631 >gi|293400718|ref|ZP_06644863.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305744|gb|EFE46988.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 644 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 240/650 (36%), Positives = 357/650 (54%), Gaps = 29/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YD SSI+IL+GL+ VR RPGMYIG TD + LHHL E++DN++DE + G+ I++ Sbjct: 2 AEKTYDGSSIQILDGLDAVRKRPGMYIGSTDGRGLHHLVWEIVDNSIDEALNGFGETIKI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158 +++ +G + V D GRG+PV+ H TL++I T LHAGGKF + Y+ SGGLHGVG Sbjct: 62 TIEKDGVICVEDEGRGMPVDMH--VSGVPTLQVIHTVLHAGGKFSSQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNAL + V+V R I+ +F G + NK G++ F PD KIF Sbjct: 120 ASVVNALCSWMEVSVYRDGKIYQMRFEDGGKKIGKLEVIGKTNKTGSKTRFMPDKKIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +++ + Q A+L ++ ++E E+ E +++ GL +++ E Sbjct: 180 TR-FSFSQIAERAQEDAFLLEGLRLVVRDEREGKERE-----EVYHYEEGLVAFMEYLHE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + E G V+ A + +E I S+ N + T +GGTHE+G R A Sbjct: 234 DKQTFHKPV-AFSGEVNGI---KVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGARNA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ YA ++ + D+ ILS+ I E +F GQTK KL + +A+ Sbjct: 290 FTKVFNDYARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---P 450 V++ + + + +L +N AT L++ + S R RK RE RK + Sbjct: 350 NAVDSIVSEKLNFFLEENKELATTLIKKMQRASTAREAARKAREDARKGKSKGKSEKILS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA A EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A I N Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG + + ED Y KVIIMTDAD DGAHI LLLTFFY+ M +LIE+ Sbjct: 470 EELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADDDGAHIQILLLTFFYRYMRELIEKG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++ +G + YA +E L++ +K+ + R+KGLGEM A QL + Sbjct: 530 MVYIAMPPLYKLQKGKEMRYAWTDEE----LDQLRKNFPKGYTLQRYKGLGEMNADQLWD 585 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M RTL++V I + + ++ LMG KA+ R +I+E SF Sbjct: 586 TTMCPETRTLIQVSIEDAVV----AEKRVSVLMGDKANLRRDWIEENVSF 631 >gi|331703509|ref|YP_004400196.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384465|gb|ACU79035.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385298|gb|ACU79867.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455442|gb|ADH21677.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802064|emb|CBW54218.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 643 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD S+I++LEGL+ VR RPGMYIG TD + LHHL E++DNA+DE +AGY I+V L Sbjct: 5 KKYDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV+DNGRGIP H KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV Sbjct: 65 EKDNSITVIDNGRGIPTGMHK--TGKSTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS T+ R I +F G L K GT I F PD IF + Sbjct: 123 TNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TK 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + + + A L+ +K S E+ F GL +++ +++++ Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQDGLVEFIKELVDDKT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 ++ I K +++ ++N I + N + T +GGTH G + L R Sbjct: 235 PVTDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291 Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I YA+ + K + S+DL V I++V I E E+ GQTK+KL + DA+ VE Sbjct: 292 INDYAKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455 + + ++L++N + A K++E + + R+ ++ R+ + +K GKL Sbjct: 352 IVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 EL++VEGDSAGGSAK R+R+ QA+LPLRGK++N A + N++I Sbjct: 412 AQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A+G + D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI K +++ Sbjct: 472 IINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVYIA 531 Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT KS Y DEE L EF K K EI R+KGLGEM A QL +T MD Sbjct: 532 LPPLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R +++V I+ L + LMG ++R +IQE F Sbjct: 588 PKNRKIIQVSISDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629 >gi|268316832|ref|YP_003290551.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] gi|262334366|gb|ACY48163.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] Length = 648 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 280/649 (43%), Positives = 391/649 (60%), Gaps = 18/649 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y I++LEGLEPVR RPGMYIGGT + LHHL E++DNA+DE + G+A+LIEV+ Sbjct: 5 AATYTGKDIQVLEGLEPVRKRPGMYIGGTGKPGLHHLLWEIVDNAVDEAVNGFASLIEVT 64 Query: 101 LDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G +TV DNGRGIPV+ HP TLE+ILTTLHAGGKFD Y SGGLHGVG Sbjct: 65 LHADGRSVTVTDNGRGIPVDPHP-VKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVGA 123 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+EL TV R + Q+F RG P + L+ + GT I FRPDP+IF Sbjct: 124 SVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDPEIFETT 183 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + + K YL+ +K + + E+ EF+ GG+ YL +E Sbjct: 184 -EFDPVWIREHLEIKTYLNRNLKIVFKDE-------TSGERYEFHHEGGIVEYLARLVEE 235 Query: 280 R-SLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337 + + + +++ +E A+ W E I S+ N I T EGGTHE G + A Sbjct: 236 QGARVVHPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEA 295 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + ++ Y E R + + +DD+ V ++++F+ EP+F GQTK KL + +A+ V Sbjct: 296 VRSAVRAYMETHDLLPRNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLA 454 A+R + +L +P A ++ +I+ ++ RL R + + +L LPGKLA Sbjct: 356 IGAVRLDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLA 415 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ ELFIVEGDSAGGSAKQAR+R QAVLPLRGK+LN A K+ N+++ Sbjct: 416 DCTSTNPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELS 475 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++VQALGC + LRY K+I++ DAD DG HI +LLLTFFY+ M LIE H+++ Sbjct: 476 NIVQALGCGIGDKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYV 535 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAM 633 PPL+RI G ++ +A D+ + +IL+E +K K ++EI RFKGLGEM+ L+ET + Sbjct: 536 AQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTL 595 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D KR LLRVEI +D L T+ +I +LMG RF+FI E A+ +D Sbjct: 596 DPRKRRLLRVEIPEDARLL--TEQTITELMGRDVSARFRFIMENAAQVD 642 >gi|291546804|emb|CBL19912.1| DNA topoisomerase IV subunit B [Ruminococcus sp. SR1/5] Length = 652 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 246/668 (36%), Positives = 347/668 (51%), Gaps = 34/668 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + D YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE + Sbjct: 5 KKKGISGMAKKDTYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHL 64 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY + I V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFDNS Y+ Sbjct: 65 AGYCSRIHVVLEKDGSCTVEDNGRGIPVDMHAK--GISAERLVFTTLHAGGKFDNSAYKT 122 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGT 205 SGGLHGVG SVVNALS L + ++R I + RGIP LE K K R GT Sbjct: 123 SGGLHGVGSSVVNALSTYLDIKISRDGYIHHDHYERGIPTIELEAGLLPKLGKTRG-TGT 181 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F PDP+IF F AA + AYL+ + + + PE E++ Sbjct: 182 CVNFLPDPEIFEK-TRFGAADVKSRLHETAYLNPELTIHFEDRR-----GDTPEDIEYHE 235 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 P G+ +++ +N + K E G VE A + E + +CN I Sbjct: 236 PEGIVGFIRDLNKNAQPLHDP-VYFKGEADGIQ---VEVAFQFTNEFRENVLGFCNNIYN 291 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 EGGTH +G + T + YA + + D+ ++S+ P F GQ Sbjct: 292 AEGGTHLTGFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQ 351 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + DA R + + +N +L + ++ R + + Sbjct: 352 TKTKLDNQDASRATGKVAGEQLVLFFDRNLETLKIVLSCAEKAAKIRKTEERAKTNLLTK 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 GKLA+C + E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A Sbjct: 412 QKYSFDSNGKLANCEKKDPSLCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKA 471 Query: 503 GSEKIRNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +K+ N +I ++ A GC + + LRY+K++IM DADVDGAHI++LLLT Sbjct: 472 TIDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTL 531 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FY+ M +LI + H+++ PPL+++ + + Y +D++ +K K H G + R+ Sbjct: 532 FYRFMPELIYEGHVYIAMPPLYKVMPKKGQEEYLYDDKALEKYR---KSHKPGSFTLQRY 588 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM A QL ET ++ R + RVEI + T+ LMG+ R FI E Sbjct: 589 KGLGEMDAQQLWETTLNPETRMMKRVEIEDARMASDVTE----ILMGSDVPPRKAFIYEH 644 Query: 678 ASFIDDVG 685 A+ + + Sbjct: 645 ATDAE-LD 651 >gi|229916010|ref|YP_002884656.1| DNA topoisomerase IV subunit B [Exiguobacterium sp. AT1b] gi|229467439|gb|ACQ69211.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b] Length = 655 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 234/652 (35%), Positives = 361/652 (55%), Gaps = 26/652 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY+ +I++LEGL VR RPGMYIG TD + LHHL E++DNA+DE +AG+ I+V++ Sbjct: 7 NYNEDAIQVLEGLTAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGGQIDVTIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +TV D+GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 67 KNDAITVRDHGRGMPTGMH--ASGKPTPEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 124 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ VT+ R +F Q F+ G + + GT + F+PD IF + Sbjct: 125 NALSSKVVVTIHRDGKVFEQTFADGGVPQTTLIETGKTRQTGTSVYFKPDATIFSTTT-Y 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + + A+L + + ++ ++E F++ G+ ++Q ++++ Sbjct: 184 NHDTLAERLRESAFLLKGLTITLTDER-------TEKQETFHYEEGIAEFVQYLNDDKAT 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 + ++ TE + +E A + + E S+ N + T +GGTHE G + A+TR Sbjct: 237 LHPIVYFEGTENE----IEIELAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRI 292 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 + +YA ++ ++ D+ I+SV I E +F GQTK+KL S +A+ + + Sbjct: 293 MNEYARKNGLLKEKDKNLDGGDVREGLTLIVSVRIPEEFLQFEGQTKSKLGSPEARASAD 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLAD 455 + + +L +NP AT L++ I ++ R RK RE R +K L GKL Sbjct: 353 SVMAKQLTIFLEENPQMATMLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + A ELF+VEGDSAGGSAKQ R+R+ QA+LPLRGK++N + + I N++I Sbjct: 413 ATSKNAAKNELFLVEGDSAGGSAKQGRDRTFQAILPLRGKVINSEKSKLQDIMKNEEINT 472 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A+G + +D ++K+IIMTDAD DGAHI LLLTFF++ M L+E +F+ Sbjct: 473 IIHAIGAGVGHDFDLDDCNFDKIIIMTDADTDGAHIQVLLLTFFFRYMRPLVEAGRVFVA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI++G D + LE+ K K + R+KGLGEM A QL ET M+ Sbjct: 533 LPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGYILQRYKGLGEMNADQLWETTMNP 592 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 + RTL+RV ++ ++ LMG R ++I+E +F + + + Sbjct: 593 DTRTLIRVTVDD----AAVADKRVSVLMGDNVTHRREWIEENVAFGLQEDDS 640 >gi|154508246|ref|ZP_02043888.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC 17982] gi|153797880|gb|EDN80300.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC 17982] Length = 674 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 240/678 (35%), Positives = 356/678 (52%), Gaps = 30/678 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 2 ADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ IEV++ +G + VVDNGRGIPV+ HP +K T+E+++T LHAGGKF Y +S Sbjct: 62 GYADHIEVTIQEDGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS ++ + RQ ++ F+ G ++ + ++ GT F P Sbjct: 121 GGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLERGEETDETGTTQVFYP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI---------------AEKYG 256 DP+IF FD L + Q A+L+ ++ + ++E +K Sbjct: 181 DPEIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATAEGDEIAGGEEALDKKTK 239 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314 + + GL+ Y++ + + E + +VE A+ W Sbjct: 240 GHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSSS 299 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + ++ NTI T EGG HE G R ALT + +Y + ++ DD+ ++S+ Sbjct: 300 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVISI 359 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F GQTKTKL + +A+ V + + +P +A ++ R+ Sbjct: 360 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIINKGQAAQAARVAA 419 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE R+ + +PGKL DCS E+FIVEGDSAGGSA R+ QA+LP Sbjct: 420 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 479 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 +RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG HI Sbjct: 480 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 539 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610 A+LLLT ++ M LIE H F+ PPL+RI + +A+ ++ + ++L + Sbjct: 540 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDELLAAGSAANRR 599 Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 LPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDE----AADADETFTILMGDDV 655 Query: 668 DERFKFIQERASFIDDVG 685 D R FIQ A+ + + Sbjct: 656 DRRRTFIQRNATDVRFLD 673 >gi|315038433|ref|YP_004032001.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112] gi|312276566|gb|ADQ59206.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112] Length = 648 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K ++K GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K+++ Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E+A + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G K YA +E L E +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|293191018|ref|ZP_06609062.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] gi|292820705|gb|EFF79671.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] Length = 674 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 242/678 (35%), Positives = 357/678 (52%), Gaps = 30/678 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 2 ADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ IEV++ +G + VVDNGRGIPV+ HP +K T+E+++T LHAGGKF Y +S Sbjct: 62 GYADHIEVTIQEDGGIKVVDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS ++ + RQ ++ F+ G K+ + ++ GT F P Sbjct: 121 GGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLKRGEETDETGTTQVFYP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI---------------AEKYG 256 DP+IF FD L + Q A+L+ ++ + ++E +K Sbjct: 181 DPEIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGGEEALDKKTK 239 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314 + + GL+ Y++ + + E + +VE A+ W Sbjct: 240 GHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSSS 299 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + ++ NTI T EGG HE G R ALT + +Y + ++ DD+ ++S+ Sbjct: 300 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVISI 359 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F GQTKTKL + +A+ V + +L +P +A ++ R+ Sbjct: 360 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWLDAHPADAKAIINKGQAAQAARVAA 419 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE R+ + +PGKL DCS E+FIVEGDSAGGSA R+ QA+LP Sbjct: 420 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 479 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 +RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG HI Sbjct: 480 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDISKLRYGKIVIMADADVDGQHI 539 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610 A+LLLT ++ M LIE H F+ PPL+RI + +A+ ++ + ++L + Sbjct: 540 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDELLAAGSAANRR 599 Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 LPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDE----AADADETFTILMGDDV 655 Query: 668 DERFKFIQERASFIDDVG 685 D R FIQ A+ + + Sbjct: 656 DRRRTFIQRNATDVRFLD 673 >gi|325677512|ref|ZP_08157176.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi ATCC 33707] gi|111185878|dbj|BAF02676.1| DNA gyrase subunit B [Rhodococcus equi] gi|325551759|gb|EGD21457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi ATCC 33707] Length = 678 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 245/689 (35%), Positives = 367/689 (53%), Gaps = 50/689 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A S+ Y ASSI +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 AAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ +EV++ +G + VVD+GRGIPV H T+E+++T LHAGGKFD+ Y +SGG Sbjct: 62 ASKVEVTMLEDGGIQVVDDGRGIPVAMH--ASGAPTVEVVMTQLHAGGKFDSDAYAVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS ++ V + +SQ + P ++ + + F DP Sbjct: 120 LHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKPGPLVQGEPTTETGT--TVRFWADP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 +IF ++ + + Q A+L+ + + ++ ++ Sbjct: 178 EIFET-TTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTAEAPKTATET 236 Query: 259 ------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +++PGGL+ Y++ + I + + + G +E A+ Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGH---ELEIAM 293 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLM 363 W + ++ NTI T EGGTHE G R ALT +KKY + + + DD+ Sbjct: 294 QWNSGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIR 353 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+SV + EP+F GQTKTKL + + + V+ A + H+ NP +A ++ + Sbjct: 354 EGLAAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAV 413 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ R RK RE V RK+A LPGKLADC N E++IVEGDSAGGSAK R Sbjct: 414 SSAQARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGR 473 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LPLRGKI+NV A +++ N ++ ++ A G ++ LRY K+++M Sbjct: 474 DSMYQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDISKLRYHKIVLMA 533 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHDEEHKQKI 600 DADVDG HIA+LLLT ++ M L+EQ H++L PPL+++ +G +A+ + + + Sbjct: 534 DADVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQKGAAPDFAYSDRERDGL 593 Query: 601 LEEFKKHGKGKIE----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 LE GK KI I R+KGLGEM A +L ET MD + R L +V ++ Sbjct: 594 LEAGLAAGK-KINKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDD----AAAAD 648 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI A + + Sbjct: 649 ELFSVLMGEDVEARRSFITRNAKDVRFLD 677 >gi|322688196|ref|YP_004207930.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F] gi|320459532|dbj|BAJ70152.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F] Length = 696 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 247/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG T Sbjct: 5 TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P S +E Sbjct: 65 RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183 Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL++ E + GT +TF DPKIF +D L Q A+L+ +K + ++ Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242 Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 E E + + + G+K Y+ ++ R E E + Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA + Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + +P Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC + ELFIVEGD Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMINAGYVYVAMPPLYRLKWTKGPHDFV 602 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V I Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + + Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696 >gi|312133628|ref|YP_004000967.1| gyrb [Bifidobacterium longum subsp. longum BBMN68] gi|311772886|gb|ADQ02374.1| GyrB [Bifidobacterium longum subsp. longum BBMN68] Length = 696 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 247/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG T Sbjct: 5 TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P S +E Sbjct: 65 RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183 Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL++ E + GT +TF DPKIF +D L Q A+L+ +K + ++ Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242 Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 E E + + + G+K Y+ ++ R E E + Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA + Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + +P Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC + ELFIVEGD Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V I Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + + Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696 >gi|324999887|ref|ZP_08120999.1| DNA gyrase, B subunit [Pseudonocardia sp. P1] Length = 700 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 247/707 (34%), Positives = 369/707 (52%), Gaps = 53/707 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 GE +++A + Y ASSI +L+GLE VR RPGMYIG T E+ LHHL EV+ Sbjct: 2 AGSRGEENQLLVAQDKAAKNAYGASSITVLKGLEAVRKRPGMYIGSTGERGLHHLIWEVV 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+A + V+L +G + V D+GRGIPVE HP K TLE++LT+LHAGGK Sbjct: 62 DNSVDEAMAGHATKVVVTLQPDGGVRVEDDGRGIPVEMHP-VEKKPTLEVVLTSLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 FD+ +Y +SGGLHGVG+SVVNALS L V V I+ Q++ P +E ++ Sbjct: 121 FDDKSYAVSGGLHGVGVSVVNALSTALEVEVRVDGKIWKQRYDHAKPGELVEAGTTKKSD 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE--------- 253 GT IT+ DP IF + + + Q + +L+ + ++ Sbjct: 181 TGTTITYWADPTIFET-TSYTLETIRRRLQEQTFLNKGLTMVLRDERRPETPATGVPSSD 239 Query: 254 -------------------------KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIF 288 P++ F++P GL+ ++ +++ I +I Sbjct: 240 AVDEDGNPVEAAPVVDVDEEPDAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIV 299 Query: 289 TGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 E G VE A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 300 AYTGEGPGHQ---VEVAMQWNSGYSESVYTFANTINTHEGGTHEEGFRHALTATVNRYAR 356 Query: 348 LTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + ++ ++ DD+ I+SV I EP+F GQTKTKL + + + V+ + Sbjct: 357 DKKLIKEKDPALSGDDIREGLAAIVSVKISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLA 416 Query: 406 HYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 + +NP EA ++ + RR + V RK+A LPGKL+DC Sbjct: 417 DWFERNPNEAKTIVNKAVSSAQARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESC 476 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 EL+IVEGDSAGGSAK R+ +QA+LP+RGKI+NV A +++ N ++ ++ A+G Sbjct: 477 ELYIVEGDSAGGSAKAGRDSMHQAILPIRGKIINVEKARIDRVLKNTEVQSIITAMGTGI 536 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 + LRY K+++M DADVDG HI +LLLT ++ M LIE H+FL PPL+++ Sbjct: 537 HDDFDLSKLRYHKLVLMADADVDGQHIRTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKW 596 Query: 585 GT---KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKR 638 G + YA+ + + ++E + GK + + R+KGLGEM A +L ET MD R Sbjct: 597 GGRGAEPEYAYSDRERDGLIEAGRAAGKKLPKDQGVQRYKGLGEMDAKELWETTMDPTNR 656 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V ++ + + LMG + R FI A + + Sbjct: 657 LLLQVSLDD----AATADELFSVLMGEDVESRRSFITRNAKDVRFLD 699 >gi|322690198|ref|YP_004219768.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|320455054|dbj|BAJ65676.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM 1217] Length = 696 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 248/698 (35%), Positives = 368/698 (52%), Gaps = 29/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG T Sbjct: 5 TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P S +E Sbjct: 65 RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183 Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL++ E + GT +TF DPKIF +D L Q A+L+ +K + ++ Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242 Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 E E + + + G+K Y+ ++ R + E E + Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKAMPVEEDVISFEAEDL 302 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA + Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + +P Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC N ELFIVEGD Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V I Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + + Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696 >gi|23465218|ref|NP_695821.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705] gi|189440294|ref|YP_001955375.1| DNA gyrase subunit B [Bifidobacterium longum DJO10A] gi|239622838|ref|ZP_04665869.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325846|gb|AAN24457.1| DNA gyrase subunit B, novobiocin-sensitive [Bifidobacterium longum NCC2705] gi|189428729|gb|ACD98877.1| Type IIA topoisomerase B subunit [Bifidobacterium longum DJO10A] gi|239514835|gb|EEQ54702.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 696 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 248/698 (35%), Positives = 367/698 (52%), Gaps = 29/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG T Sbjct: 5 TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IE+++ + + VVD+GRGIPV+ P S +E Sbjct: 65 RGLHHLVYEIVDNSVDEALAGYASHIEITILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183 Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL++ E + GT +TF DPKIF +D L Q A+L+ +K + ++ Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242 Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 E E + + + G+K Y+ ++ R E E + Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDL 302 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA + Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + +P Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPA 422 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC N ELFIVEGD Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPEECELFIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V I Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + + Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696 >gi|329890024|ref|ZP_08268367.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568] gi|328845325|gb|EGF94889.1| DNA topoisomerase IV, B subunit [Brevundimonas diminuta ATCC 11568] Length = 661 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 349/645 (54%), Positives = 453/645 (70%), Gaps = 15/645 (2%) Query: 47 SSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGF 106 SSI +LEGLEPVR RPGMYIGGTDE+ALHHLF+EV+DNAMDE +A +A LI V LD G+ Sbjct: 25 SSIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNAMDEAVAKHAKLITVDLDAEGY 84 Query: 107 LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALS 166 L+V D+GRGIPV+ HPK P KS LE+++T LH+GGKF YE SGGLHGVG+SVVNALS Sbjct: 85 LSVRDDGRGIPVDPHPKHPGKSALEVVMTVLHSGGKFSGKAYETSGGLHGVGVSVVNALS 144 Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAAR 226 + L VTV R + Q FSRG +P+++ + +GT I F+PD +IFG A F AR Sbjct: 145 ESLDVTVWRDGFEWRQSFSRGHVQAPIQQVGPSKK-KGTLIRFKPDEQIFGVGATFKPAR 203 Query: 227 LLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSE 286 L +MT++KAYL V+ W+C E P + +FPGGL L ++ ++ Sbjct: 204 LFRMTRAKAYLFRGVEIRWTCAPERITDA-TPAQATLHFPGGLADALAERVGELETVTPV 262 Query: 287 IFTGKTEKKGTHRGTVEWAIAWC-----EENPEITSYCNTILTDEGGTHESGLRVALTRG 341 F G+ E+KG G +EWA+ W + + I SYCNT+ T +GGTHE+G R AL +G Sbjct: 263 -FAGRVERKGEA-GALEWAVTWSPIGFGDADSFIASYCNTVSTPDGGTHEAGFRAALVKG 320 Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +K Y EL KRA I ++D++ +A ++SVFIR PEF GQTK +L S + QR E LR Sbjct: 321 LKAYGELINEKRAAQITAEDVIANAGALISVFIRNPEFQGQTKDRLSSPEGQRLTEQLLR 380 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461 DPFDH+L ++P +A LL +VI+R+E+RLRRRK +EV R A RKLRLPGKL+DCS+ A Sbjct: 381 DPFDHWLTESPKQANALLGFVIDRAEDRLRRRKDKEVQRAAATRKLRLPGKLSDCSRQAA 440 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNVASA ++K+R N ++ DL+ ALG Sbjct: 441 EGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVASATADKLRANVELTDLMLALG 500 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + S++ +DLRYE+V+IMTDADVDGAHIA+LL+TFFY+ M DLI Q L++ PPL+R Sbjct: 501 VQAGSRFSVDDLRYERVVIMTDADVDGAHIAALLITFFYRSMPDLIRQGRLYMALPPLYR 560 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I+ G S YA D+ H+ ++L K K EI RFKGLGEM+ASQLKET MD KRTL Sbjct: 561 ISAGPLSEYARDDAHRDELLATTFK--GKKTEIGRFKGLGEMMASQLKETTMDPKKRTLA 618 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID-DVG 685 R+ + S ++ +D + +LMG KA+ R+ FIQE A F D+ Sbjct: 619 RIALPD---SEEEIEDLVERLMGRKAEARYNFIQENARFAQADLD 660 >gi|320456980|dbj|BAJ67601.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 696 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 249/698 (35%), Positives = 368/698 (52%), Gaps = 29/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG T Sbjct: 5 TSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIGSTGP 64 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IEVS+ + + VVD+GRGIPV+ P S +E Sbjct: 65 RGLHHLVYEIVDNSVDEALAGYASHIEVSILPDNGIRVVDDGRGIPVDEVP-GEGVSGVE 123 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 124 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTA 183 Query: 192 PLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL++ E + GT +TF DPKIF +D L Q A+L+ +K + ++ Sbjct: 184 PLKQGEPMTEGESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKISLTDER 242 Query: 250 EI------------AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 E E + + + G+K Y++ ++ R E E + Sbjct: 243 ENDQAGDEVAGDAADEPGAKHQTVTYQYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDL 302 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA + Sbjct: 303 KLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKGILKDK 362 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + +P Sbjct: 363 DENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPN 422 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC + ELFIVEGD Sbjct: 423 EAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGD 482 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 483 SAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDFDISK 542 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + Sbjct: 543 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFV 602 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V I Sbjct: 603 YTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIED- 661 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + + Sbjct: 662 ---AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 696 >gi|86738729|ref|YP_479129.1| DNA gyrase subunit B [Frankia sp. CcI3] gi|86565591|gb|ABD09400.1| DNA gyrase subunit B [Frankia sp. CcI3] Length = 679 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 248/674 (36%), Positives = 360/674 (53%), Gaps = 29/674 (4%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 G + D+ A + YDASSI++LEGL+ VR RPGMYIG T E+ LHHL EV+DNA Sbjct: 20 PGRLVDTSAQNEGTRRVAYDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNA 79 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGY + I V+L +G + V DNGRGIPV HP + +E++LTTLHAGGKFD Sbjct: 80 VDEALAGYCDTITVTLLADGGVRVTDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDG 138 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 +Y +SGGLHGVG+SVVNALS L V + ++ Q + P PL K R + Sbjct: 139 KSYAVSGGLHGVGVSVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS 198 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF DP IF + L + Q A+L+ + +++ + + Sbjct: 199 -VTFWADPTIFET-TEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVT-----YKY 251 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GL ++ + I + + +++ G E A+ W + ++ NTI T Sbjct: 252 ANGLVDFVGHLNATKDTIHRSVISLESKGVGI---EAELAMQWNGGYTESVYTFANTINT 308 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIR 375 EGGTHE G R ALT + YA+ + + DD+ I+SV + Sbjct: 309 HEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLA 368 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +P+F GQTKTKL + +A++ V+ + N EA ++ ++ R+ R+ Sbjct: 369 QPQFEGQTKTKLGNTEAKKFVQEMCYSALKDWFEVNRTEARAIVSKALDAQRARIAARQA 428 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 R+ RK + LPGKLADC EL+IVEGDSAGGSAK R+ QA+LPLRG Sbjct: 429 RDLTRRKGLLGGTGLPGKLADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRG 488 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A +++ N ++ L+QALG + LRY K+++M DADVDG HI +L Sbjct: 489 KILNVEKARIDRVLKNTEVQALIQALGTGIHDDFDIAKLRYHKIVLMADADVDGQHIRTL 548 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--K 611 LLT ++ M L+E H+FL PPL++I G + YA+ + + ++ + G+ K Sbjct: 549 LLTLLFRFMRPLVEAGHVFLAQPPLYKIKWGREDWEYAYSDRERDGLVARGVESGRKLPK 608 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 I RFKGLGEM A++L +T MD ++R LL+V ++ + + LMG D R Sbjct: 609 DAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDD----AAVADELFSVLMGEDVDARR 664 Query: 672 KFIQERASFIDDVG 685 FIQ A + + Sbjct: 665 SFIQRNAKDVRFLD 678 >gi|323466444|gb|ADX70131.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus H10] Length = 648 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +T+ D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F +G P+ L+ K ++ GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + +++ + F + G+K+++ Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDNGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L E +K K + RFKGLGEM A Sbjct: 529 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|119025023|ref|YP_908868.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703] gi|154486351|ref|ZP_02027758.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis L2-32] gi|118764607|dbj|BAF38786.1| DNA gyrase (topoisomerase II) B subunit [Bifidobacterium adolescentis ATCC 15703] gi|154084214|gb|EDN83259.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis L2-32] Length = 712 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 250/708 (35%), Positives = 372/708 (52%), Gaps = 28/708 (3%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 + D D + +Q + + + + + + ++YDAS +R+LEGLE VR+ Sbjct: 11 VADLDADSLNESAENTQEDQIQDQIQNDQLEDAQLDDSLSPEHYDASDLRVLEGLEAVRI 70 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL E++DN++DE +AGYA+ IEV++ +G + VVD+GRGIPV+ Sbjct: 71 RPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDGGVRVVDDGRGIPVDE 130 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ + Sbjct: 131 VP-GEGISGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHW 189 Query: 181 SQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 +Q + P + L K + + GT +TF D KIF +D L Q A+L+ Sbjct: 190 TQTYIDQKPTARLLKGKPMEEGESTGTSVTFWADGKIFET-TTYDFEILRNRFQQMAFLN 248 Query: 239 GRVKTCWSCDKEIA-----------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287 +K + +E E + + + G+K Y+ +++R E Sbjct: 249 KGLKISLTDLREPDQAGDEVSGEESETEDKFQTVTYQYNDGIKDYVDYLVKSRKATPVEP 308 Query: 288 FTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345 E + + E A+ W + ++ NTI T EGGTHE G R ALT + +Y Sbjct: 309 DVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRY 368 Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403 A + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 369 AREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDK 428 Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAH 462 + +P EA +++ IE S RL +K RE R+ +I +P KL DC N Sbjct: 429 LGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPE 488 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G Sbjct: 489 ECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGG 548 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 549 GYGEDFDLNKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRL 608 Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKR 638 + + + + ++L E K G+ I R+KGLGEM +L ET MD + R Sbjct: 609 KWTKGPHDFVYTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHR 668 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L +V+I ++ + LMG + + R FIQ A + + Sbjct: 669 ILKQVQIED----AAAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 712 >gi|323484278|ref|ZP_08089646.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum WAL-14163] gi|323694735|ref|ZP_08108893.1| B subunit [Clostridium symbiosum WAL-14673] gi|323402430|gb|EGA94760.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum WAL-14163] gi|323501172|gb|EGB17076.1| B subunit [Clostridium symbiosum WAL-14673] Length = 639 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 254/660 (38%), Positives = 347/660 (52%), Gaps = 35/660 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDA SI +LEGLE VR RPGMYIGG K L+HL E++DN++DE +AG N I V Sbjct: 2 AKTQYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECNDIWV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV DNGRGIPVE H K S I+L+TLHAGGKFDN+ Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVRDNGRGIPVEMHKK--GVSAERIVLSTLHAGGKFDNNAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPK 214 SVVNALS+ + VTV + I + RGIP L K R GT+I F PD + Sbjct: 120 SVVNALSEHMDVTVYKNGQIHHDAYERGIPTVKLVDGLLPVIGKTRE-TGTKINFMPDGE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A L AYL+ R+ + + G EK + P G+ Y++ Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPRLSIHYENKR-----AGEAEKITYSEPEGILAYVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 ++ + + T + VE A + + E +CN I T EGGTH G Sbjct: 233 ELNSTKTPVHEPFYFKGTSEN----IEVEVAFQFVDTFEENVLGFCNNIFTQEGGTHLVG 288 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T I YA ++ + D +++V +P F GQTKTKL S D Sbjct: 289 FKTRFTTMINSYARELGILKEKDSNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASAD 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 + V N + Y +N ++ + ++ R K + + G Sbjct: 349 CTKAVFNVTGEELQLYFDRNVEVLKAVIACAEKSAKIRKAEEKAKTNMLTKSKFSFDSNG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK RNR QA+LP+RGKILNV A +K+ N Sbjct: 409 KLANCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKATMDKVLANA 468 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 469 EIKTMINTFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528 Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 H+++ PPLF++ + K Y +DE K LE ++K+ G + R+KGLGEM A Sbjct: 529 SNGHVYIAMPPLFKVIPKKGKEEYLYDE----KALERYRKNHTGDFTLQRYKGLGEMDAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET ++ R L RVEI + + T+ LMG++ R +FI E A + + Sbjct: 585 QLWETTLNPENRILKRVEIEDARMASEITE----MLMGSEVPPRRQFIYEHADEAE-IDA 639 >gi|255326477|ref|ZP_05367559.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296] gi|255296517|gb|EET75852.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296] Length = 678 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 248/682 (36%), Positives = 360/682 (52%), Gaps = 37/682 (5%) Query: 35 FANQSASDN---YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + Q+AS+ Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 2 ASEQNASEQQHEYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ I+V++ +G + V D+GRGIPV+ HP +KST+E+++T LHAGGKF Y +S Sbjct: 62 GYASKIDVTIQADGAVRVEDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYSVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + V RQ + FS G +K + +K GT TF P Sbjct: 121 GGLHGVGISVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRKGEPSDKTGTIQTFYP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE------------------ 253 DP+IF FD L Q A+L+ + + ++E Sbjct: 181 DPEIFET-VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRV 239 Query: 254 --KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 + + GL Y+ I +E + ++E A+ W Sbjct: 240 RANADGFMTVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGA 299 Query: 312 N-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVG 368 + SY NTI T EGGTHE G R ALT + +YA + + ++ +D+ Sbjct: 300 YKESVYSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 359 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428 ++S+ I EP+F GQTKTKL + +A+ + + D + +NP A ++ I ++ Sbjct: 360 VISIKISEPQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQA 419 Query: 429 RLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 R+ RK RE R+ + +PGKL DCS +E+++VEGDSAGGSA Q RN + Q Sbjct: 420 RIAARKARETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRNPNTQ 479 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 A+LPLRGKILNV A ++ +N +I ++ A G + E RY K+++M DADVD Sbjct: 480 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIGDDFDIEKARYHKIVLMADADVD 539 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKK 606 G HI +LLLT ++ M LIE +++L PPL+RI Y + + + + L Sbjct: 540 GQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAA 599 Query: 607 HGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 + I R+KGLGEM ++L +T MD +RTLL+V++ + LM Sbjct: 600 KNLRLPKDNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMED----AAAADQIFSVLM 655 Query: 664 GTKADERFKFIQERASFIDDVG 685 G + R +FIQ+ A I + Sbjct: 656 GEDVEARREFIQQNAKDIRFLD 677 >gi|153855242|ref|ZP_01996408.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814] gi|149752241|gb|EDM62172.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814] Length = 678 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 241/660 (36%), Positives = 351/660 (53%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI ILEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I Sbjct: 40 AKKNTYDAGSIAILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCSEIH 99 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G T+ DNGRG+PV+ H S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 100 VTLEKDGSATIADNGRGVPVDLH--ATGVSAARVVYTTLHAGGKFDDSAYKTSGGLHGVG 157 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V ++R I ++ +G P+ LE K R GT++ F PD Sbjct: 158 SSVVNALSTYMDVQISRDGYIHHDRYEQGKPVIELEDGLLPTIGKTRK-TGTKVNFLPDD 216 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + AYL+ +K + + PE+ ++ P G+ ++ Sbjct: 217 TIFEK-TKFKAEEVKSRLHETAYLNPDLKIVFEDKR-----GAEPEQIIYHEPDGILGFI 270 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + ++ K E +G VE A + E + + +CN I EGGTH + Sbjct: 271 RELNHKKEVVHDP-VYFKGEAEGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLT 326 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T I +YA ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 327 GFKTTFTTAINQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 386 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + D + +N K++ + ++ R + + Sbjct: 387 DAAKACSKVTNDEIIRFFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 446 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK AR+R QA+LP+RGKILNV A +K+ N Sbjct: 447 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKVLAN 506 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 507 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 566 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + + Y +D+ K LE+++K G + R+KGLGEM A Sbjct: 567 IFEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKTHDGPFTLQRYKGLGEMDA 622 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L VEI + T+ LMG++ R FI E A+ + + Sbjct: 623 EQLWETTLNPETRLLKLVEIEDARMASSVTE----MLMGSEVPPRRSFIYENATEAE-LD 677 >gi|239626403|ref|ZP_04669434.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516549|gb|EEQ56415.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 639 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 254/660 (38%), Positives = 351/660 (53%), Gaps = 35/660 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + Y+A SI +LEGLE VR RPGMYIGG K L+HL E++DNA+DE +AGY + + V Sbjct: 2 AKEQYNADSITVLEGLEAVRKRPGMYIGGVGSKGLNHLIYEIVDNAVDEHLAGYCSSVWV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV DNGRGIPV H K S I+L+TLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVRDNGRGIPVGMHKK--GLSAARIVLSTLHAGGKFDNDAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214 SVVNALS+ + V V R I+ ++ +G P+ LE K R GTRI F PD Sbjct: 120 SVVNALSEHMDVKVYRDGYIYHDEYEKGKPIIKLENGLLPVVGKTRE-TGTRINFLPDGD 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A L AYL+ + C+ + G EK ++ P G+ Y++ Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPMLTICYENKR-----AGENEKITYHEPEGIIAYVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESG 333 ++ + I+ K R VE AI + + E +CN I T EGGTH +G Sbjct: 233 ELNTGKAAVHDPIYF----KGTVDRIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAG 288 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T I YA ++ + D ++++ +P F GQTKTK+ S D Sbjct: 289 FKTKFTALINSYARELGILKEKDTNFTGADTRNGMTAVVAIKHPDPIFEGQTKTKMASAD 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + V D Y +N ++ + + R K + + G Sbjct: 349 ATKAVFTVTGDELQLYFDRNVEVLKGVIACAEKSARIRRAEEKAKTNMLTKSKFSFDSNG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N Sbjct: 409 KLANCESRDADKCEIFIVEGDSAGGSAKTARNRRYQAILPIRGKILNVEKASMDKVLANA 468 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 469 EIKTMINTFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELI 528 Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 H+++ PPLF++ + + Y +DE+ LE ++K G + R+KGLGEM A Sbjct: 529 YDGHVYIAMPPLFKVIPKRGEEQYLYDEKE----LERYRKTHTGDFTLQRYKGLGEMDAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 QL ET +D +R L RVEI + + T+ LMG++ R FI E A + + Sbjct: 585 QLWETTLDPERRVLKRVEIEDARMASEITE----MLMGSEVAPRRTFIYEHADEAE-IDA 639 >gi|89114228|gb|ABD61709.1| DNA gyrase subunit B [Acholeplasma oculi] Length = 594 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 240/612 (39%), Positives = 358/612 (58%), Gaps = 20/612 (3%) Query: 51 ILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 ILEGLE V+ RPGMYIG T E+ LHHL E++DN++DE +AGYA+ I + + + V Sbjct: 1 ILEGLEAVKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQVT 60 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 DNGRGIPV+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS Sbjct: 61 DNGRGIPVDIHPK-TKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 V + + I+ QK+ RGIP L + T+ TF DP IF + ++ L Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGTTEETG-TKTTFLADPLIFTETTVYNLETLKNR 178 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 Q A+L+ +K + P +E F++ GG+ Y+Q ++++ I ++ Sbjct: 179 IQQLAFLNKGLKLTLIDSR-----LETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYT 233 Query: 291 KTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + E+ G TVE A+ + + + N I T EGG HE G ++ALTR I KYA+ Sbjct: 234 EKEQDGV---TVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDL 290 Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + K+ I+ +D I+SV EP+F GQTKTKL + + + L + + +L+ Sbjct: 291 KMKKDDVILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLL 350 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468 +NP +A +++ V+ + R+ RK +E RK+ + L KLADC +E++I Sbjct: 351 ENPQQAKLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYI 410 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G ++ Sbjct: 411 VEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEF 470 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 LRY K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL+++T G Sbjct: 471 DITKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNL 530 Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 Y + E+ + L+ + K I R+KGLGEM A QL +T MD RTLL++++ Sbjct: 531 KYVYSEDELNETLKSIE----TKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIKLEDA 586 Query: 649 LNSLKDTQDSIN 660 + + + Sbjct: 587 I----EADQVFS 594 >gi|260101486|ref|ZP_05751723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus DSM 20075] gi|260084700|gb|EEW68820.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus DSM 20075] Length = 653 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 7 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 66 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +T+ D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 67 VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F +G P+ L+ K ++ GT ITF+PD IF Sbjct: 125 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + +++ + F + G+K+++ Sbjct: 185 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 238 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 293 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 294 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 354 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 414 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 473 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 474 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 533 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L E +K K + RFKGLGEM A Sbjct: 534 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 589 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV+I+ + + LMG K R K+I+E F Sbjct: 590 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 639 >gi|296127875|ref|YP_003635125.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109] gi|296019690|gb|ADG72926.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109] Length = 698 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 249/709 (35%), Positives = 366/709 (51%), Gaps = 36/709 (5%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSAS-DNYDASSIRILEGLEPVR 59 M D + P Q + + + G P A S YDAS+I +LEGLE VR Sbjct: 1 MAD------QSTPRDPQDETAEGQDPGGAPTPDAPPAAKPSGSTYDASNITVLEGLEAVR 54 Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIG T + LHHL EV+DN++DE +AGY + IEV+L +G + V DNGRGIPV Sbjct: 55 KRPGMYIGSTGARGLHHLVYEVVDNSVDEALAGYCDTIEVTLLADGGVRVTDNGRGIPVA 114 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HP + T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + V R Sbjct: 115 IHP-TEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVVNALSSRVETVVKRDGYA 173 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 +SQ F+ G ++ ++ GT TF D IF +D L Q A+L+ Sbjct: 174 WSQSFADGGKPVGELRQGPATDETGTSQTFWADGTIFET-TEYDFETLRARFQQYAFLNK 232 Query: 240 RVKTCWSCDKEIAEKY--------------GIPEKEEFYFPGGLKTYLQTKLENRSLISS 285 +K + ++ + + GGL Y++ + + Sbjct: 233 GLKISLTDERPQHTGTEDEVTGETPSEAPATTARNVTYKYDGGLVDYVKHLNSAKKVDHV 292 Query: 286 EIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343 E + T R +VE A+ W + ++ NTI T EGGTHE G R A+T + Sbjct: 293 HPDVIDFEAEDTTRRISVEIALQWTTAYSESVHTFANTISTTEGGTHEEGFRAAMTSLMN 352 Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + +A+R V+ + Sbjct: 353 RYARDKGILKEKDENLTGDDIREGLTAVISVKLGEPQFEGQTKTKLGNTEAKRFVQTVVN 412 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNI 460 D +L +P EA ++ I+ + R+ RK RE R+ + +PGKL DC N Sbjct: 413 DQLGAWLDAHPSEAKDVIRKSIQAAAARMAARKAREATRRKGLLESNSMPGKLRDCQSNN 472 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 E+FIVEGDSAGGSA + RN QA++P+RGKILNV A +K NQ++ L+ A Sbjct: 473 PAECEVFIVEGDSAGGSAVRGRNPRTQAIMPIRGKILNVERARLDKALGNQEVQALITAF 532 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + LRY K+++M DADVDG HI +LLLT ++ M LI +++ PPL+ Sbjct: 533 GTGIGEDFDVSKLRYHKIVLMADADVDGQHIRTLLLTLLFRYMPQLITGGFVYMAQPPLY 592 Query: 581 RITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDAN 636 RI Y + + + ++ + + +G+ + + R+KGLGEM ++L ET M Sbjct: 593 RIKWSNAPHDYVYSDRERDAVITDGRANGRRLPKENGVQRYKGLGEMDYTELWETTMSPE 652 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V +++ + + LMG + R FIQ A + + Sbjct: 653 HRTLLQVTLDE----AAAADEIFSVLMGEDVEARRGFIQRNAKDVRFLD 697 >gi|313665344|ref|YP_004047215.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50] gi|312949281|gb|ADR23877.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50] Length = 643 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 245/646 (37%), Positives = 351/646 (54%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD S+I++LEGLE VR RPGMYIG TD K LHHL E++DNA+DE +AGY I+V+L Sbjct: 5 KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVTL 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +T+ DNGRGIP H KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV Sbjct: 65 EKDNSITISDNGRGIPTGMHK--TGKSTPEVIFSILHAGGKFDSTAYKSSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS T+ R I +F G L K GT I F PD IF + Sbjct: 123 TNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TK 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + + + A L+ +K S E+ F GL +++ ++++ Sbjct: 182 FNFSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFEDGLVEFIKELVDDKK 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 +I+ I K +++ ++N I + N + T +GGTH G + L R Sbjct: 235 VITDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291 Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I YA+ + K + S+DL V I++V I E E+ GQTK+KL + DA+ VE Sbjct: 292 INDYAKEQKILKDKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQ 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLAD 455 + + ++L++N + A K++E + + R+ ++ R+ + +K GKL Sbjct: 352 IVYEFMSYWLIENKVLANKIIENALNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 EL++VEGDSAGGSAK R+R+ QA+LPLRGK++N A + N++I Sbjct: 412 AQGKKREINELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ A+G + D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI K +++ Sbjct: 472 IINAIGTGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVYIA 531 Query: 576 SPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++IT KS Y DEE L EF K K EI R+KGLGEM A QL +T MD Sbjct: 532 LPPLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R +++V I L + LMG ++R +IQE F Sbjct: 588 PKNRKIIQVTITDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629 >gi|21904202|gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS315] Length = 620 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 243/630 (38%), Positives = 362/630 (57%), Gaps = 24/630 (3%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 MRPGMYIG T ++ LHHL E++DN++DE +AG+A+ I+V ++ + +TVVD+GRGIPV+ Sbjct: 1 MRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVD 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 K + +E + T LHAGGKF +Y++SGGLHGVG SVVNALS +L V V + I Sbjct: 61 IQVK-TGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQI 119 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q+F RG ++ LE T + F PDP+IF + FD + L K Q A+L+ Sbjct: 120 HYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 178 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 +K + + E ++E F++ GG+ +Y++ + + +I E +G Sbjct: 179 GLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGI-- 231 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 VE A+ + + S+ N I T EGGTHE G R ALTR I YA+ + + + Sbjct: 232 -AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +D+ ++SV P+F GQTKTKL + + + + F +L++NP A Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVAR 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K++E I S+ R+ ++ RE +K+ + LPGKLADCS N A+ ELFIVEGDSAG Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK RNR QA+LP+RGKILNV A +KI N++I L A+G + + RY Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593 +K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ PP++ + G++ Y Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPG 530 Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 E+ + LE++ G+ K + R+KGLGEM QL ET MD R + RV ++ Sbjct: 531 IDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDD--- 586 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680 + + LMG + + R FI+E A + Sbjct: 587 -AAEADKVFDMLMGDRVEPRRDFIEENAVY 615 >gi|172057602|ref|YP_001814062.1| DNA topoisomerase IV subunit B [Exiguobacterium sibiricum 255-15] gi|171990123|gb|ACB61045.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15] Length = 653 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 243/650 (37%), Positives = 355/650 (54%), Gaps = 33/650 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+ +I++LEGLE VR RPGMYIG TD + LHHL E++DNA+DE +AG+ I+V + Sbjct: 6 NNYNDDAIQVLEGLEAVRKRPGMYIGSTDHRGLHHLVYEIVDNAIDEALAGFGEQIDVII 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV D+GRG+P H K T E+I T LHAGGKF Y+ SGGLHGVG SV Sbjct: 66 HKDNAITVRDHGRGMPTGMH--ASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L VT+ R F Q F G + ++GT + F+PD KIF Sbjct: 124 VNALSTQLKVTIYRDGKQFEQTFEDGGIPKTTLLETGTTRQKGTSVYFKPDGKIFST-LT 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L + + A+L +K + ++ + + F + G+ ++ +++ Sbjct: 183 YNYDTLAERLRESAFLLKGLKITLTDERS-------DKADTFQYEDGVSEFVGYLNDDKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + + TE V+ A + + E S+ N + T +GGTHE G + A+TR Sbjct: 236 TLHPTVAFEGTEND----IEVDIAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTR 291 Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 + +YA ++ ++ +D+ I+S+ I E +F GQTK+KL S +A+ + Sbjct: 292 VMNEYARKNTLLKEKDKNLDGNDIREGLTMIVSIRIPEEFLQFEGQTKSKLGSPEARTSC 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLA 454 + + YL +NP AT L++ I ++ R RK RE R +K L GKL Sbjct: 352 DAVITRRLSTYLEENPQTATLLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLT 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 + A ELF+VEGDSAGGSAKQ RNR+ QA+LPLRGK+LN A I N++I Sbjct: 412 PAASKNAEKNELFLVEGDSAGGSAKQGRNRTFQAILPLRGKVLNTEKAKLADIMKNEEIN 471 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ A+G + + D ++KVIIMTDAD DGAHI LLLTFF++ M LI+ +F+ Sbjct: 472 MIIHAIGSGVGADFDLSDCNFDKVIIMTDADTDGAHIQVLLLTFFFRYMRPLIDAGKVFV 531 Query: 575 ISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PPL+R+++G K Y DEE K ++F K I R+KGLGEM A QL E Sbjct: 532 ALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGK----GYMIQRYKGLGEMNAPQLWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T MD RTL+RV I+ + ++ LMG R +I++ +F Sbjct: 588 TTMDPETRTLIRVTIDD----AAVAEKRVSVLMGDNVGHRRSWIEDNVAF 633 >gi|328466147|gb|EGF37306.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus MTCC 5463] Length = 648 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 360/654 (55%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +T+ D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F +G P+ L+ K ++ GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + +++ + F + G+K+++ Sbjct: 180 -ITKYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTSQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L E +K K + RFKGLGEM A Sbjct: 529 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAIKRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|50365125|ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1] gi|50363681|gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1] Length = 647 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 249/657 (37%), Positives = 357/657 (54%), Gaps = 30/657 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD S+I++LEGLE VR RPGMYIG TD + LHHL E++DN++DE +AGY I Sbjct: 2 AKEVKYDESAIQVLEGLEAVRKRPGMYIGSTDVRGLHHLVWEIVDNSIDEALAGYCTEIN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ NG +TV DNGRG+P+ H + T E+I + LHAGGKF S Y+ SGGLHGVG Sbjct: 62 VTLEKNGSVTVADNGRGVPIGMH--STGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS + +VT+ R + +F+ G L+ + NK GT + F PD IF Sbjct: 120 SSVVNALSKKFNVTIYRDKKVNEIEFTNGGKLNIPLTEVGTTNKTGTVVNFLPDDSIFNT 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ + + + A L+ +K S + E+ F GL +++ Sbjct: 180 -TKFNFTTISERLKESALLNSGLKITISDK-------VNDKFVEYQFENGLVEFVKELSS 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + I+ + K+ +++ + N I + N + T +GGTH +G + L Sbjct: 232 EFTHITDPVVITGESKRIASEICIQYTE---DFNETILGFANNVKTGDGGTHITGFKTGL 288 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 R I YA+ + + + S+DL V I++V I E E+ GQTK KL + DA+ Sbjct: 289 VRAINDYAKNNKILKDKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG--K 452 VE D + +L++N + ATK++E + R RK R+ R + +K K Sbjct: 349 AVEQVTYDFMNFWLIENKVPATKIIEKAMLARRAREEARKARQAIRDSKGKKTTRAMLGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L EL++VEGDSAGGSAK R+R+ QA+LPLRGK++N A ++ N++ Sbjct: 409 LTPAQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A+G + D+ Y KVIIMTDAD DGAHI +LLLTFFY+ M DLI KH+ Sbjct: 469 IQTIITAIGAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHV 528 Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 F+ PPL+++T K +Y DE+ L +F K K EI R+KGLGEM A QL ET Sbjct: 529 FIALPPLYKLTFSDRKFIYLWDEQE----LADFAKTATKKYEIQRYKGLGEMNADQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVGT 686 M+ +R L+ V I L + S LMG A++R +IQE F D+ Sbjct: 585 TMNPAQRKLIVVTIEDALM----AEKSFRTLMGEDAEKRKVWIQENVKFTLEDNDDA 637 >gi|158311873|ref|YP_001504381.1| DNA gyrase subunit B [Frankia sp. EAN1pec] gi|158107278|gb|ABW09475.1| DNA gyrase, B subunit [Frankia sp. EAN1pec] Length = 652 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 358/659 (54%), Gaps = 27/659 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGLE VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY + I V+L Sbjct: 3 YDASSIKVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTISVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIPV HP T+E++LTTLHAGGKFD +Y +SGGLHGVG+SVVN Sbjct: 63 DGGVRVTDNGRGIPVGEHP-VKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V + + Q + P PL + + ITF DP IF + Sbjct: 122 ALSTRLDVEIQTDGHSWFQPYENSRPARPLAQTGTSKKTGT-TITFWADPTIFET-TTYK 179 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK---EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 L + Q A+L+ + ++ E+ P + F + GL ++ + Sbjct: 180 YETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNATK 239 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + +++ G E A+ W + ++ NTI T EGGTHE G R ALT Sbjct: 240 DAVHRSVISLESKGTGI---EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALT 296 Query: 340 RGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 + YA+ + + DD+ I+SV + +P+F GQTKTKL + Sbjct: 297 SAVNAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNT 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 +A++ V+ + N EA ++ ++ R+ R+ R+ RK + L Sbjct: 357 EAKKFVQEMCYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGL 416 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV A +++ Sbjct: 417 PGKLADCQFTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLK 476 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N ++ L+QALGC + LRY K+++M DADVDG HI +LLLT ++ M L+E Sbjct: 477 NTEVQALIQALGCGIHDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEA 536 Query: 570 KHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLAS 626 H+FL PPL++I G + YA+ + + +LE+ + G+ K I RFKGLGEM A+ Sbjct: 537 GHVFLAQPPLYKIKWGREDWEYAYSDRERDGLLEQGVEAGRKLPKDAIQRFKGLGEMNAT 596 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L +T MD +KR LL+V ++ + + LMG D R FIQ A + + Sbjct: 597 ELWDTTMDPDKRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 651 >gi|325956844|ref|YP_004292256.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC] gi|325333409|gb|ADZ07317.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC] Length = 648 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 246/654 (37%), Positives = 359/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K ++K GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + ++L VK + ++E + F + G+K+++ Sbjct: 180 TT-KYKYETIQERIRESSFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E+A + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G K YA +E L E +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKSKIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|160914998|ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991] gi|158432797|gb|EDP11086.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991] Length = 643 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 236/650 (36%), Positives = 349/650 (53%), Gaps = 29/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YD SSI+IL+GLE VR RPGMYIG TD + LHHL E++DN++DE + GY + I + Sbjct: 2 AEKVYDGSSIQILDGLEAVRKRPGMYIGSTDRRGLHHLVWEIVDNSIDEALNGYGDTIRI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158 +L+ + V D+GRG+PV+ H +++I T LHAGGKF + Y+ SGGLHGVG Sbjct: 62 TLEEGDVICVEDHGRGMPVDMH--ASGVPAVQVIYTVLHAGGKFTSEGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ + VT+ R I +F G K NK G+ + F+ D IF Sbjct: 120 ASVVNALSEWVEVTIHRDGKIHQIRFEDGGSKVGKLKVLGKTNKTGSIVRFKADKHIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + +++ + Q A+L + ++ E+ +++ GL ++ E Sbjct: 180 T-KYSFSQIAERAQEDAFLLEGLCLEVRDERVGKERE-----VRYHYANGLTAFMDYLHE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ + + V+ A + +E I S+ N + T +GGTHE+G + A Sbjct: 234 DKQTFHQPVAFSGM----VNDIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA + + D+ ILS+ I E +F GQTK KL + +A+ Sbjct: 290 FTKVFNEYARRNGILKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLP 450 V+ + + +L +N A L++ + S+ R RK RE RK + L Sbjct: 350 NAVDQLVSEKLSFWLEENKELALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILS 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA A EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A I N Sbjct: 410 GKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKN 469 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG + + ED Y KVIIMTDAD DGAHI +LLLTFFY+ M +LIE+ Sbjct: 470 EELNTIIHALGAGVGANFHAEDASYHKVIIMTDADTDGAHIQTLLLTFFYRYMKELIEKG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++ +G + YA +E +I + F K + R+KGLGEM A QL E Sbjct: 530 MVYIALPPLYKLQKGKEIQYAWSDEELDRIRKTFPK----GYTLQRYKGLGEMNADQLWE 585 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M RTL++V I+ + ++ LMG KAD R +I++ SF Sbjct: 586 TTMSPATRTLIQVTIDDAF----LAEKRVSVLMGDKADVRRTWIEDNVSF 631 >gi|325283469|ref|YP_004256010.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP] gi|324315278|gb|ADY26393.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP] Length = 655 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 258/659 (39%), Positives = 364/659 (55%), Gaps = 22/659 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + NY A SI IL+GLE VR RPGMY+ GGT H L +E+IDNA+DE +AG+AN Sbjct: 2 TNPNSNYTADSISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNAIDEGLAGFANE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ +G TV DNGRGIPV+ K +S +E+I T LHAGGKF Y++SGGLHG Sbjct: 62 ITVTMHEDGSATVTDNGRGIPVDIM-KSEGRSAIEVIFTELHAGGKFGQGAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPK 214 VG SVVNALS L VTV + + +F +G+ +PLE K T+++F PDP Sbjct: 121 VGSSVVNALSTYLDVTVNKGGQLHHIRFEKGVVTTPLEVLGKTPKDVTWSTKVSFHPDPA 180 Query: 215 IFGDKAG-FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +F + FD R+ + + AYL+G K ++ G +E F+ GG+ + Sbjct: 181 VFSEFENLFDYDRIRRRLRELAYLTGL-KIVLRDER-AVLHAGEVREETFHEQGGIANFA 238 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 + + + + + + V + A + I +Y N I T +GGT +G Sbjct: 239 ASLVSDSTKLLYDQPIVMRGTSNDVEVEVAFIHANTYSSDNILTYANMIRTRDGGTPLTG 298 Query: 334 LRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + A TR + KYA+ ++ + DDL+ ++SV + +P+F Q K KL++ + Sbjct: 299 FKTAYTRILNKYAKDKNLVKSGNPAPSGDDLLEGIYCVISVKLGDPQFESQAKVKLLNSE 358 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 AQ V + + F +L +NP ++E E + R RK V R + LP Sbjct: 359 AQTAVNAIVGEKFAEFLEENPKVGKTIVEKAAEAARAREAARKARDIVRRSNPLENDDLP 418 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS +ELFIVEG+SAGGSAK R R QA+LPLRGKILNV A K N Sbjct: 419 GKLADCSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKSLKN 478 Query: 511 QQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I ++ A+G + ++ E LRY K+IIMTDAD+DG HI +LLLTFF++ M Sbjct: 479 AEIRSMIAAIGAGVDGSGDQLRFDVEQLRYHKIIIMTDADMDGGHITTLLLTFFFRYMKP 538 Query: 566 LIEQKHLFLISPPLFRITQGTKS--VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 ++EQ HL++ PPL+RIT G + Y ++++ ++ + K GK K EI RFKGLGEM Sbjct: 539 VVEQGHLYIAQPPLYRITVGRQKTGEYLYNDDELRQHVARANKEGK-KFEIQRFKGLGEM 597 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A QL ET M+ R L +V I L + LMG+ R FIQE A F + Sbjct: 598 NADQLWETTMNPETRVLKQVAIEDLLV----ANEIFEDLMGSDVAPRKVFIQENARFAE 652 >gi|291455697|ref|ZP_06595087.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213] gi|291382625|gb|EFE90143.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213] Length = 712 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 248/702 (35%), Positives = 368/702 (52%), Gaps = 29/702 (4%) Query: 8 LFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIG 67 L + Q + + + A ++Y+AS +R+LEGLE VR+RPGMYIG Sbjct: 17 LAEETSKEEQLKAAAERINNAELTEGELDESMAPEHYEASDLRVLEGLEAVRIRPGMYIG 76 Query: 68 GTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK 127 T + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ P Sbjct: 77 STGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGV 135 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 136 SGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTHVDIEVRRQGFHWTQTYVDQ 195 Query: 188 IPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 P++PL++ E + GT +TF DPKIF +D L Q A+L+ +K Sbjct: 196 HPVAPLKQGEPMAEDESTGTSVTFWADPKIFETTI-YDFETLRSRFQQMAFLNKGLKLSL 254 Query: 246 SCDKEIA------------EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + ++ E + + + G+K Y+ ++ R E E Sbjct: 255 TDERVTDQAGDEVAGDAEGEPGEKHQTVTYQYLNGIKDYVDYLVKVRKATPVEEDVISFE 314 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT-- 349 + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 315 AEDLKLGISAELAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKAI 374 Query: 350 QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + Sbjct: 375 LKDKDENLSGDDVREGLTAVISVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFD 434 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFI 468 +P EA +++ IE S RL +K RE R+ +I +P KL DC + ELFI Sbjct: 435 AHPAEAKNIIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFI 494 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G + Sbjct: 495 VEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGGGYGEDF 554 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKS 588 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 555 DISKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTKGP 614 Query: 589 V-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + + + + ++L E K +G+ I R+KGLGEM +L ET MD R L +V Sbjct: 615 HDFVYTDAERDRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVH 674 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 I ++ + LMG + + R FIQ A + + Sbjct: 675 IED----AAAADETFSMLMGDEVEPRRLFIQRNAKNVRWIDA 712 >gi|227893710|ref|ZP_04011515.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047] gi|227864570|gb|EEJ71991.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047] Length = 648 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 357/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKAHTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K ++K GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCLGKTKDKTGTTITFKPDDSIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K+++ Sbjct: 180 TT-KYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDIFKYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E+A + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 469 EEINTMIYTIGAGVGTEFNVNDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G K YA +E L E +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKSKVQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMDPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|229817001|ref|ZP_04447283.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM 20098] gi|229785746|gb|EEP21860.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM 20098] Length = 717 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 245/708 (34%), Positives = 372/708 (52%), Gaps = 29/708 (4%) Query: 2 TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMR 61 + + L + + Q + + ++YDAS +++LEGLE VR+R Sbjct: 16 SSLADSLENATSKEEQLKAVDEHINNAELQDGELDESMTPEHYDASDLKVLEGLEAVRIR 75 Query: 62 PGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 PGMYIG T + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ Sbjct: 76 PGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNGIRVVDDGRGIPVDIV 135 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 P S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++ Sbjct: 136 P-GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWT 194 Query: 182 QKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q + P +PL + + + + GT +TF DP IF +D L Q A+L+ Sbjct: 195 QTYKDQHPTAPLAQGQPMTDDESTGTSVTFWADPAIFET-TTYDFETLRSRFQQMAFLNK 253 Query: 240 RVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEI 287 +K + +++ E + + + G+K Y+ +++R + E Sbjct: 254 GLKITLTDLRQLDEAGDEVAGDGDNAAEELHQTATYQYVNGIKDYVDYLVKSRKAVPVED 313 Query: 288 FTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345 + + + E A+ W + ++ NTI T EGGTHE G R ALT + +Y Sbjct: 314 EVINFDAEDLKLGISAEIAMEWTTAYSESVHTFANTISTTEGGTHEEGFRAALTSLVNRY 373 Query: 346 AELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403 A + ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 374 AREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFEGQTKTKLGNSEAKTFVQRVMTDK 433 Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAH 462 + +P EA +++ IE S RL +K RE R+ +I +P KL DC N Sbjct: 434 LGDWFDAHPSEAKNVIQKAIEASRARLAAKKARENTRRKSIFESAGMPDKLKDCQSNNPE 493 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G Sbjct: 494 ECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERASLDRMMKSDTIESLITAVGG 553 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 554 GYGEDFDINKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRL 613 Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKR 638 + + + + + ++L E K G+ I R+KGLGEM +L ET MD R Sbjct: 614 KWTKGAHDFVYTDAERDRVLAEGKAKGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHR 673 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L +V+I + ++ + LMG + + R FIQ A + + Sbjct: 674 ILKQVQIED----AEAADETFSMLMGDEVEPRRLFIQRNARNVSWIDA 717 >gi|293336227|ref|NP_001168561.1| hypothetical protein LOC100382343 [Zea mays] gi|223949177|gb|ACN28672.1| unknown [Zea mays] Length = 726 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 239/670 (35%), Positives = 371/670 (55%), Gaps = 25/670 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 S A + S Y A+++++LE L+ VR RPGMYIG T + LHHL E++DNA+ Sbjct: 70 ASTTASEAMHEKQVSAEYTAANVQVLEALDGVRTRPGMYIGSTGPRGLHHLVYEILDNAV 129 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144 DE AG+A+ I+V L + ++V DNGRGIP + HP+ KS +E +LT +HA Sbjct: 130 DEAQAGHASKIDVVLHDDNSVSVTDNGRGIPTDMHPQ-TKKSCVETVLTLMHAGGKFGGS 188 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---LSPLEKKEKVRN 201 S Y +SGGLHGVG+SVVNALS+ L VTV R Q +SRG P L+ + + Sbjct: 189 KSGYSVSGGLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSRGKPTTRLTSSTLTGETSS 248 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 ++GTRI F PD IF FD + + A+L+ + + E+ ++ Sbjct: 249 RQGTRIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTIILT-----KEEGHTVQRN 303 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321 E+ + GGL Y++ ++ + + E G V + + + Y N+ Sbjct: 304 EYCYAGGLVEYVKWLNTDKKPLHDP-IAFRKELDGIT-VDVSLQWSSDSYSDTVLGYANS 361 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T +GGTH GL+ +LTR I A+ ++ + I++ + + I+SV + PEF Sbjct: 362 IRTIDGGTHIDGLKASLTRTINNLAKKSKTIKDKDITLSGEHVREGMTCIISVKVPSPEF 421 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438 GQTKT+L + + +R VE ++++ YL +P +L + +R + V Sbjct: 422 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 481 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 K+ ++ LPGKLADC+ +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN Sbjct: 482 RTKSVLKSSSLPGKLADCASANPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 541 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557 + + N++I +L+ ALG + + +++ LRY K++I+TDADVDGAHI +LLLT Sbjct: 542 IERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLT 601 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ L ++ +++ PPL+++ +G + Y +D+ ++I+ F + I RF Sbjct: 602 FFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPAN--ASYHIQRF 659 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM+ +QL ET MD +R L ++ + + + LMGT+ + R + IQ+ Sbjct: 660 KGLGEMMPAQLWETTMDPERRLLKQLRVED----AAEANVVFSSLMGTRVEYRKELIQKA 715 Query: 678 AS--FIDDVG 685 AS ID + Sbjct: 716 ASMINIDQLD 725 >gi|331090927|ref|ZP_08339769.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405149|gb|EGG84685.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium 2_1_46FAA] Length = 640 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 243/659 (36%), Positives = 347/659 (52%), Gaps = 33/659 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI ILEGLE VR+RPGMYIG K L+HL E++DNA+DE +AG+ N IE Sbjct: 2 AKKNTYDADSISILEGLEAVRVRPGMYIGSVSTKGLNHLVYEIVDNAVDEHLAGFCNRIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G TV DNGRG+PV H K S I+ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEKDGSATVSDNGRGVPVGMHQK--GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214 SVVNALS + V ++R + + RGIP L K GT + F PD Sbjct: 120 SSVVNALSAYMDVKISRDGAVHHDHYERGIPTIELVDGLLPVIAKTKKTGTTVNFLPDDT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A + AYL+ + + + + ++ P G+ ++ Sbjct: 180 IFEK-TRFKAEEIKSRLHETAYLNPTLTIVFEDKRGAETERIE-----YHEPNGILGFIA 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + + + K E G VE A + E + + +CN I EGGTH +G Sbjct: 234 DLNQKKETVHEP-VYFKGEADGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T + +YA ++ + D+ I+S+ +P F GQTKTKL + D Sbjct: 290 FKSTFTMVMNQYAREIGVLKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNQD 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + D + +N K+L + ++ R K + G Sbjct: 350 AGKATSKVTNDEITRFFDKNLDTLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N Sbjct: 410 KLANCESRDASKCEIFIVEGDSAGGSAKTARNRQFQAILPIRGKILNVEKASIDKVLANA 469 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI Sbjct: 470 EINSMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 529 Query: 568 EQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 + H+++ PPL++ +T+ + Y +D+ K LE++++ KG + R+KGLGEM A Sbjct: 530 FEGHVYIAMPPLYKAVTKKGEEEYLYDD----KALEKYRRRQKGAYTLQRYKGLGEMDAE 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T ++ R L +EI + T+ LMGT+ R FI E A+ + + Sbjct: 586 QLWDTTLNPETRMLKLIEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE-LD 639 >gi|161507592|ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571] gi|160348581|gb|ABX27255.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571] Length = 653 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 241/654 (36%), Positives = 360/654 (55%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 7 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 66 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +T+ D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 67 VTIHKDNSVTIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 124 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F +G P+ L+ K ++ GT ITF+PD IF Sbjct: 125 SSVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFS 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + +++ + F + G+K+++ Sbjct: 185 TT-KYKYETIQERIRESAFLLKGVKFVLTDERDPE------HHDVFQYDDGIKSFVSYLN 237 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 238 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 293 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 294 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 354 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 414 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 473 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 474 EEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 533 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L E +K K + RFKGLGEM A Sbjct: 534 KIYIALPPLYRLQKGRGKKAQIQYAWTDEE----LAEDEKAMKRGYSLQRFKGLGEMNAE 589 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV+I+ + + LMG K R K+I++ F Sbjct: 590 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEKNVKF 639 >gi|325661698|ref|ZP_08150321.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium 4_1_37FAA] gi|331084709|ref|ZP_08333797.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471951|gb|EGC75166.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410803|gb|EGG90225.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 640 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 242/659 (36%), Positives = 349/659 (52%), Gaps = 33/659 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG+ N I Sbjct: 2 AKKNTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCNKIS 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV DNGRG+PV H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VFLEKDGSATVEDNGRGVPVGMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214 SVVNALS+ + V ++R + ++ RGIP+ LE K GT + F PD + Sbjct: 120 SSVVNALSEYMDVKISRDGGVHHDRYERGIPVVELEDGLLPVIAKTRKTGTLVNFLPDGE 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A + AYL+ + + + ++ F+ P G+ +++ Sbjct: 180 IFEK-TKFKADEVKSRLHETAYLNPELTIIFEDRRREQTEHIE-----FHEPDGIIGFIK 233 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + + +I K E +G VE A + E + + +CN I EGGTH +G Sbjct: 234 DMNQKKEVIHEP-VYFKGEAEGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T I +YA ++ + D+ I+SV +P F GQTKTKL + D Sbjct: 290 FKTTFTTVINQYARELGILKEKDSNFTGADIRNGMTAIVSVKHPDPRFEGQTKTKLDNPD 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + + Y +N K++ + ++ R + + G Sbjct: 350 ASKATGKVTGEEIVRYFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDSNG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK AR+R QA+LP+RGKILNV A +K+ N Sbjct: 410 KLANCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANA 469 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI Sbjct: 470 EIKTMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 529 Query: 568 EQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 + H+++ PPL++ + + Y +D+ K LE+++K G + R+KGLGEM A Sbjct: 530 FEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEQYRKRQTGPFTLQRYKGLGEMDAE 585 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L VEI + T+ LMG+ R FI E A+ + + Sbjct: 586 QLWETTLNPETRMLKLVEIEDARMASSVTE----MLMGSDVPPRRAFIYENAAEAE-LD 639 >gi|229818508|ref|YP_002880034.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333] gi|229564421|gb|ACQ78272.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333] Length = 685 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 251/690 (36%), Positives = 370/690 (53%), Gaps = 35/690 (5%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 + E + ++ YDAS+I +LEGLE VR RPGMYIG T E+ LHHL SEV+D Sbjct: 2 ADTHETVEDTIDTTNGSASGYDASNITVLEGLEAVRKRPGMYIGSTGERGLHHLVSEVVD 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AGYA I+V+L +G + VVD+GRGIPV+ + K +E++LT LHAGGKF Sbjct: 62 NSVDEALAGYATRIDVTLTEDGGVRVVDDGRGIPVDIV-ESEGKPAVEVVLTVLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 Y +SGGLHGVG+SVVNALS L V V Q +++ Q ++ G+P +PLE+ + + Sbjct: 121 GGGGYAVSGGLHGVGVSVVNALSHRLEVEVRVQGSVWRQSYTDGVPDAPLER-GEATDVT 179 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE- 262 GT +TF P+ IF FD L Q A+L+ ++ + ++ + E Sbjct: 180 GTTVTFWPNGDIFETTV-FDFETLRGRFQQYAFLNKGLEISLTDERRESGTGDEVAGEHA 238 Query: 263 ------------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GTVE 303 + + GL Y++ + E + R ++E Sbjct: 239 DEETSVQLRDESHERTVTYRYDDGLVDYVRHINAAKRADLVHPEIIDFEAEDVERTISLE 298 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 A+ W + +Y NTI T EGGTHE G R ALT + +YA ++ ++ + Sbjct: 299 IAMQWTSAYSESVHTYANTINTSEGGTHEEGFRAALTTLVNRYAREKNLLKEKDDNLTGE 358 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ +LS+ + EP+F GQTKTKL + +A+ + + D +L +P EA +++ Sbjct: 359 DVREGLTAVLSIKLGEPQFEGQTKTKLGNTEARTFTQKVVFDQLGDWLASHPNEAREIVR 418 Query: 421 WVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 I+ S R+ RK RE R+ + + +PGKL DCS A +E+FIVEGDSAGGSA Sbjct: 419 KAIQASAARMAARKAREATRRKGLLEGVGMPGKLKDCSSRDASVSEVFIVEGDSAGGSAV 478 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 Q RN QA+LP+RGKILNV A +K NQ++ L+ A G + LRY K++ Sbjct: 479 QGRNPETQAILPIRGKILNVEKARLDKALGNQEVQALITAFGTGIGEDFDLSKLRYHKIV 538 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQ 598 +M DADVDG HI +LLLT ++ M L+E H++L PPL+++ Y + + + Sbjct: 539 LMADADVDGQHICTLLLTLLFRYMRPLVEHGHVYLAMPPLYKLKWTNGPHDYVYSDRERD 598 Query: 599 KILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +LE + G+ + I R+KGLGEM +L ET MD + RTL +V I + Sbjct: 599 ALLEAGRAAGRRLPKDGGIQRYKGLGEMDYRELWETTMDPDTRTLKQVTIGE----AAMA 654 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ A + + Sbjct: 655 DEIFAVLMGEDVESRRSFIQRNARDVRFLD 684 >gi|297205989|ref|ZP_06923384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] gi|297149115|gb|EFH29413.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] Length = 652 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 232/658 (35%), Positives = 352/658 (53%), Gaps = 33/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + +++YD SSI+IL GLE VR RPGMYIG TD K ++ L E++DN++DE +AGY Sbjct: 3 GNSLVKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYG 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGL Sbjct: 63 KEINVTIHEDNSITVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L V V R + ++F G P+ L+ K +K GT ITF+PD Sbjct: 121 HGVGSSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPD- 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + + + + + A+L VK ++ EEF + G+K+++ Sbjct: 180 ERVFSTTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332 E + ++F + ++ +E++ + + E S+ N + T +GG+HE Sbjct: 234 SYLNEGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEM 289 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R TR YA+ ++ +I D +LS+ + E EF GQTK KL Sbjct: 290 GARSGFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLG 349 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446 + A+ V+ + + +YL++N A L++ + + R +K R+ +R +K Sbjct: 350 TPQARSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKK 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 410 ELLSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G ++++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M + Sbjct: 470 IFKNEEINTMIHTIGAGVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPM 529 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +E +++ PPL+R+ +G K YA +E ++ + K + RFKGLGE Sbjct: 530 VEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGE 585 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL +T M+ R L+RV+I+ + + LMG K + R K+I++ F Sbjct: 586 MNADQLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVEARRKWIEQNVKF 639 >gi|28569044|gb|AAO47225.1|AF205853_1 DNA gyrase subunit B [Streptomyces rishiriensis] Length = 677 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 239/679 (35%), Positives = 363/679 (53%), Gaps = 23/679 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL E++ Sbjct: 5 DTRTATDTRGSEQPGHVGTASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG A+ I+V++ +G + VVDNGRGIPV HP + +E++LT LHAGGK Sbjct: 65 DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y +SGGLHGVG+SVVNALS L + ++Q + G P +PL + E Sbjct: 124 FGGGGYAVSGGLHGVGLSVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR- 182 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253 GT +TF D IF + L + Q A+L+G + + ++ + A+ Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEAD 241 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313 + + + GG+ ++ ++ + + + E A+ W + Sbjct: 242 SDPTAKTVSYRYDGGITDFVVHLNARKAEPAHPSVITIAAEDTERLLSAEIALQWNGQYT 301 Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370 + + SY N I T EGGTHE G R ALT + +YA + + ++ +D+ I+ Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAII 361 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV + EP+F GQTKTKL + + + V+ + + + +NP EA ++ ++ + R+ Sbjct: 362 SVKLGEPQFEGQTKTKLGNTEVRTFVQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARV 421 Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R++ R+ + LPGKL+DC N +E+FIVEGDSAGGSAK RN QA+ Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAI 481 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A +K+ NQ+I L+ A G + LRY K+I+M DADVDG Sbjct: 482 LPIRGKILNVEKARIDKVLQNQEIQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQ 541 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606 HI++LLLTF ++ M L+E+ H+ L PPL++I + YA+ + + +LE Sbjct: 542 HISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDG 601 Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 I RFKGLGEM A +L+ T MD + R L +V ++ D + LMG Sbjct: 602 RRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAFADDLFSVLMGED 657 Query: 667 ADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 658 VEARRHFIQRNAQDVRFLD 676 >gi|78707349|gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularum] gi|78707351|gb|ABB46481.1| DNA gyrase subunit B [Acholeplasma granularum] gi|78707353|gb|ABB46482.1| DNA gyrase subunit B [Acholeplasma granularum] Length = 587 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 238/605 (39%), Positives = 355/605 (58%), Gaps = 20/605 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 V+ RPGMYIG T E+ LHHL E++DN++DE +AGYA+ I + + + V DNGRGIP Sbjct: 1 VKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADEINIEILKGNIVRVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS+ V + + Sbjct: 61 VDIHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEYFIVEIHKDG 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 TI+ Q++ RGIP L+ GT ITF DPKIF + ++ L Q A+L Sbjct: 120 TIYEQRYERGIPAYDLKTIGTTEK-SGTVITFLADPKIFTETTVYNLETLKNRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + +K + + P E F++ GG+ Y++ +++S I +I E+ G Sbjct: 179 NKGLKLHLTDSR-----PDEPIAESFHYEGGIVEYVKFLNQSKSKIHPDIIYIDKEQDGI 233 Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 TVE A+ + + + N I T EGG HE G ++ALTR I KYA+ + K+ S Sbjct: 234 ---TVELALQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMKKDDS 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 I +D I+SV EP+F GQTKTKL + + + + + +L++NP +A Sbjct: 291 ISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLLENPQQAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++E ++ + R+ RK +E RK+ + L KLADC +E++IVEGDSAG Sbjct: 351 MIVEKILLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G ++ RY Sbjct: 411 GSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGIADEFDITKARY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595 K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL++++ G YA+ +E Sbjct: 471 HKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNEKYAYTDE 530 Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +I+ + K I R+KGLGEM A QL +T MD KRTLL++++ + + Sbjct: 531 ELNEIVSGIE----TKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIKLEDAI----EA 582 Query: 656 QDSIN 660 + Sbjct: 583 DQVFS 587 >gi|320528087|ref|ZP_08029252.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204] gi|320131435|gb|EFW24000.1| DNA topoisomerase IV, B subunit [Solobacterium moorei F0204] Length = 639 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 239/649 (36%), Positives = 362/649 (55%), Gaps = 30/649 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD +SI+ILEGLE VR RPGMYIG TD + LHHL E++DN++DE + GY I+++ Sbjct: 2 ANRYDDNSIQILEGLEAVRKRPGMYIGSTDTRGLHHLIWEIVDNSIDEALNGYGKKIQIT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGI 159 L+ +G +TV D GRG+P+ H +TL++I T LHAGGKF + Y+ +GGLHGVG Sbjct: 62 LEADGSVTVQDEGRGMPIGQH--ASGVNTLQVIFTVLHAGGKFSSEGGYKTAGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ L V VA + +F+ G + N+ G+ + F+PDP+IF Sbjct: 120 SVVNALSEWLIVEVAHDGELVRMEFAAGGKKIGKLEHLGKTNRTGSTVRFKPDPRIFSTT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + + + + +A+L + S + E E + + GL +L E+ Sbjct: 180 -EYKYDVVCERAREEAFLLSGIAMVVSDKR-----NKKNETETYLYEDGLTAFLGYLHED 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 R+++ + + E G VE A + ++ S+ N + T +GGTHE+G + A Sbjct: 234 RNVLMNPVK-FSGEASGIQ---VEAAFQYTDDYQENTYSFVNLVRTGDGGTHEAGFKGAF 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQR 394 T+ I YA + ++ D+ ILSV + E +F GQTK+KL + A+ Sbjct: 290 TKAINDYARKYGLLKAKDKNLEGGDVREGLTTILSVSVPEGLLQFEGQTKSKLGTPQAKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPG 451 VE + + +L +N ++ L+ +++ S R+ RK R+ RK L G Sbjct: 350 AVEAVVSEKLSFWLEENRNQSDTLVRKMLKASLARIAARKARDEIRKGKRVGKGEKVLSG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA A ELF+VEGDSAGGSAKQ R+ QA+LPLRGK+LN I N+ Sbjct: 410 KLAPAQTKDARVKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEKCTLSDIEKNE 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ LG + ++ Y KVIIMTDAD DG+HI LLLTFFY+ M L+EQ Sbjct: 470 ELNTLIYTLGAGVGPDFDYKESNYGKVIIMTDADDDGSHIQILLLTFFYRYMRPLLEQGM 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++T+G + Y + ++ + + GK+EI R+KGLGEM A+QL ET Sbjct: 530 IYIALPPLYKVTKGKTTEYVYSDQELDALRRKL-----GKVEIQRYKGLGEMNATQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD ++RTL++V I+ + + + LMG KA+ R K+I++ SF Sbjct: 585 TMDPSQRTLIKVGISDGVK----AERRVTVLMGDKAELRRKWIEDNVSF 629 >gi|227506183|ref|ZP_03936232.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940] gi|227197207|gb|EEI77255.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940] Length = 684 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 251/692 (36%), Positives = 372/692 (53%), Gaps = 59/692 (8%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YDA SI ILEGLE VR RPGMYIG T + LHHL EV+DN++DE +AGYA + V Sbjct: 4 EHAYDAGSITILEGLEAVRKRPGMYIGSTGVRGLHHLIWEVVDNSVDEAMAGYATKVVVK 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V+D+GRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVGIS Sbjct: 64 LLADGGVEVIDDGRGIPVEMH--ATGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + + R + Q FS IP +E GT I F DP+IF Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFSNAIPDELVE--GGNARGTGTTIRFWADPEIFETT- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------- 254 +D + + Q A+L+ + ++ E+ Sbjct: 179 EYDYQTIARRLQEMAFLNKGLTIELIDERVTKEQLELEAIADAESGETALEAESFDDIDV 238 Query: 255 -------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 + +K +++P GL Y++ + ++ I I + + Sbjct: 239 DAEADGPSEEKPAKKLQKKVVYHYPDGLIDYVKHLNKTKTSIHPTIVAFDVKGEDH---E 295 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA+ + ++ ++ Sbjct: 296 VEVALQWNQGYKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKEKDGNLS 355 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 +D ++SV + +P+F GQTKTKL + + + V+ A+ + + + NP EA + Sbjct: 356 GEDCREGLSAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPAEAKAI 415 Query: 419 LEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + + + R+ RK RE+ RK+A LPGKLADC +EL+IVEGDSAGGS Sbjct: 416 INKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGDSAGGS 475 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ E LRY K Sbjct: 476 AKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIEKLRYNK 535 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEH 596 +++M DADVDG HIA+LLLT ++ M L+E H++L +PPL+++ G + YA ++ Sbjct: 536 IVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWGKGEPGYAFSDDE 595 Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + K+L E ++ + + I R+KGLGEM AS+L ET +D + R L RV DL + Sbjct: 596 RDKLLAEGLENNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRILRRV----DLEDAQ 651 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI RA + + Sbjct: 652 RADELFSILMGDDVSARRSFITRRAKDVRFLD 683 >gi|153814924|ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756] gi|317500436|ref|ZP_07958660.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|331089557|ref|ZP_08338456.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847955|gb|EDK24873.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756] gi|316898191|gb|EFV20238.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|330404925|gb|EGG84463.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium 3_1_46FAA] Length = 640 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 243/660 (36%), Positives = 352/660 (53%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YDA SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AG+ I Sbjct: 2 AGNNTYDAGSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNSVDEHLAGFCTEIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VVLEKDGTATVTDNGRGIPVDMHQK--GISAARLVFTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V ++R ++ ++ RG+P+ LE K K + GT I F PD Sbjct: 120 SSVVNALSTYMDVKISRDGAVYHDRYERGVPVIELENGLLPKIGKTKK-TGTTINFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + AYL+ + + + ++ ++ P G+ ++ Sbjct: 179 TIFEK-TKFRAEEVKSRLHETAYLNPELTIIFEDKRGDQTEHIE-----YHEPEGIIGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + + K E G VE A + E + + +CN I EGGTH + Sbjct: 233 RDLNKKKEALHEP-VYFKGEADGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + +YA ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 289 GFKTTFTTVMNQYAREIGILKEKDTNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNP 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + V D Y +N +L + ++ R K + Sbjct: 349 DAAKAVGKVAGDEIVLYFDRNLDVLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDPKKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + + Y +D+ K LE++++ KG + R+KGLGEM A Sbjct: 529 IYEGHVYIAMPPLYKAMPKSGEEEYLYDD----KALEKYRRTHKGPFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET +D +R L VEI + T+ LMGT+ R FI E A+ + + Sbjct: 585 EQLWETTLDPKRRLLKLVEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE-LD 639 >gi|256851124|ref|ZP_05556513.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260660548|ref|ZP_05861463.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN] gi|282932237|ref|ZP_06337681.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] gi|256616186|gb|EEU21374.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260548270|gb|EEX24245.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN] gi|281303632|gb|EFA95790.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] Length = 647 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 232/653 (35%), Positives = 351/653 (53%), Gaps = 33/653 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++YD SSI+IL GLE VR RPGMYIG TD K ++ L E++DN++DE +AGY I V Sbjct: 3 KANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEINV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 63 TIHEDNSITVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R + ++F G P+ L+ K +K GT ITF+PD + Sbjct: 121 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPD-ERVFS 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + + + + A+L VK ++ EEF + G+K+++ E Sbjct: 180 TTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFVSYLNE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 + ++F + ++ +E++ + + E S+ N + T +GG+HE G R Sbjct: 234 GKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSG 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 TR YA+ ++ +I D +LS+ + E EF GQTK KL + A+ Sbjct: 290 FTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQAR 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 V+ + + +YL++N A L++ + + R +K R+ +R +K L G Sbjct: 350 SAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N+ Sbjct: 410 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNE 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++++ +D Y+K+IIMTDAD DGAHI LLLTFFY+ M ++E Sbjct: 470 EINTMIHTIGAGVGTEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGR 529 Query: 572 LFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+R+ +G K YA +E ++ + K + RFKGLGEM A Q Sbjct: 530 VYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGEMNADQ 585 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L +T M+ R L+RV+I+ + + LMG K + R K+I++ F Sbjct: 586 LWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVEARRKWIEQNVKF 634 >gi|15604098|ref|NP_220613.1| DNA topoisomerase IV subunit B [Rickettsia prowazekii str. Madrid E] gi|81554898|sp|Q9ZDU7|PARE_RICPR RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|3860790|emb|CAA14690.1| DNA GYRASE SUBUNIT B (gyrB1) [Rickettsia prowazekii] gi|292571824|gb|ADE29739.1| DNA topoisomerase IV, B subunit [Rickettsia prowazekii Rp22] Length = 662 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 335/649 (51%), Positives = 446/649 (68%), Gaps = 9/649 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + N+ NY A I +L+GLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE +A Sbjct: 8 NKEKKNKIVYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++I + + + +T+ DNGRGIP++NHPKFP+KS LE+ILTTLH+G KF N+ Y S Sbjct: 68 GFASIIMIKMHQDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGSKFSNNVYHTS 127 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + V +Q ++SQ +S+G L+ L E + RGT I F P Sbjct: 128 GGLHGVGISVVNALSKHFKIKVYKQGKLYSQSYSKGAKLTDLISAEASKRLRGTSINFTP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 DP+IF +K F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 DPEIFSEKLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVP--SDIPKKALINFPNGLKD 245 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP--EITSYCNTILTDEGGT 329 YL +K+ +L+ EIF+G E +EWAI W + + SYCNT+ T +GGT Sbjct: 246 YLSSKISLDNLVIPEIFSGNIES-TVDDIKLEWAICWQNNDTSAFMQSYCNTVPTPQGGT 304 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y+E+ NK+A ++ +D++ +A +LS+FI EP F GQTK KLVS Sbjct: 305 HEQGLKSAILRGLKAYSEMIGNKKAANLTIEDILETASIVLSIFIVEPSFQGQTKEKLVS 364 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + + AT LLE VI +E R ++ +R ++RK+ +KLRL Sbjct: 365 NGVSKLVENIIKDHFDHFLSSDKVLATHLLEHVIAIAEFRRNKKNERNISRKSVTQKLRL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ A GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 425 PGKLADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIIN 484 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+E+ Sbjct: 485 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEE 544 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K YA DEE K K+ + K K KIE+ RFKGLGEM+ +QLK Sbjct: 545 GHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKASKAKIEVGRFKGLGEMMPAQLK 604 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 ET M KR+LL+V + +++ ++ LMG K ++RF+FI E+A Sbjct: 605 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQA 649 >gi|253580826|ref|ZP_04858089.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847896|gb|EES75863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 664 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 244/663 (36%), Positives = 348/663 (52%), Gaps = 34/663 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + + + YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + Sbjct: 22 TDMAKKNTYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCS 81 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 LI V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFDNS Y+ SGGLH Sbjct: 82 LIHVILEKDGSCTVTDNGRGIPVDMHEK--GVSAERLVFTTLHAGGKFDNSAYKTSGGLH 139 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFR 210 GVG SVVNALS L + ++R + + RGIP LE K K R + GT I F Sbjct: 140 GVGSSVVNALSTYLDIKISRDGYVHHDHYERGIPTIELEEGLLPKLGKTR-QTGTSINFL 198 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF F A + AYL+ + + + + ++ P G+ Sbjct: 199 PDPEIFEK-TRFSATEVKSRLHETAYLNPELTIRFEDKRGAEVEDIT-----YHEPDGII 252 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ + ++ K E G VE A + E + +CN I EGGT Sbjct: 253 GFIKDLNHSAEVLHDP-VYLKGEADGIQ---VEVAFQFTNEFRENVLGFCNNIYNAEGGT 308 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G + T + YA + + D+ ++S+ EP F GQTKTKL Sbjct: 309 HLTGFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPEPRFEGQTKTKL 368 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 + DA R + + Y +N +L + ++ R + + Sbjct: 369 DNQDASRATGKVVGEQMVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSF 428 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 GKLA+C + E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ Sbjct: 429 DSNGKLANCEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKV 488 Query: 508 RNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 N +I ++ A GC + + LRY+K++IM DADVDGAHI++LLLT FY+ M Sbjct: 489 LANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFM 548 Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 DLI + H+++ PPL+++ + + Y +D++ ++ + H G + R+KGLGE Sbjct: 549 PDLITEGHVYIAMPPLYKVMPKKGQEEYLYDDKALERYR---RAHKPGSFTLQRYKGLGE 605 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M A QL ET ++ R + RVEI + T+ LMG+ R KFI E A + Sbjct: 606 MDAEQLWETTLNPETRMMKRVEIEDARLASSVTE----ILMGSDVPPRKKFIYEHAQDAE 661 Query: 683 DVG 685 + Sbjct: 662 -LD 663 >gi|58337412|ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus NCFM] gi|227904045|ref|ZP_04021850.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC 4796] gi|58254729|gb|AAV42966.1| DNA topoisomerase IV subunitB [Lactobacillus acidophilus NCFM] gi|227868064|gb|EEJ75485.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC 4796] Length = 648 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 240/654 (36%), Positives = 355/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +T+ D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHKDNSITIRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K + GT ITF+PD +F Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFQNGGHPVGTLKCLGKTSDPTGTTITFKPDDTVFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++ + F + G+K+++ Sbjct: 180 T-TKYKYETIQERIRESAFLLKGVKFVLTDERTPE------HHDVFQYDDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S +F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISNVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LS+ I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSIKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IEQ Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEQG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L E +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKNVEIQYAWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWQTTMNPESRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|291320111|ref|YP_003515369.1| topoisomerase IV subunit B [Mycoplasma agalactiae] gi|290752440|emb|CBH40411.1| Topoisomerase IV subunit B [Mycoplasma agalactiae] Length = 641 Score = 572 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 243/651 (37%), Positives = 355/651 (54%), Gaps = 32/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NYDASSI+ L+GLE VR RPGMYIG TD LHHL E++DN++DE +AG AN I V Sbjct: 5 SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIIV 64 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V DNGRGIPV P KS +E++ T LHAGGKF+ Y+ SGGLHGVG Sbjct: 65 ILKKDGSVIVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L V R I+ F G + NKRGT I F P+ +IF Sbjct: 123 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTSIQFWPNYEIFKK- 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F+ + + + ++L + + EEF + G+K +++ ++ Sbjct: 182 AKFNFETIAERLRESSFLISNLSIKLIDE-------QSERSEEFKYSNGIKAFVEFINDS 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + + K+ + +E + + N I S+ N + T +GGTHE GL+ A+ Sbjct: 235 KTALFNVYSF----KQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 290 Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 T+ +A + + + +D+ +LSV I E EF QTK KL + +A+ Sbjct: 291 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE A+ ++ +N A K+L+ + S+ R RK R RKT K L GK Sbjct: 351 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A I N++ Sbjct: 411 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A+G + ++Y+KVIIMTDAD DGAHI LLLTFF++ M LIE+ + Sbjct: 471 INTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIEEGKV 530 Query: 573 FLISPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPLF++T + +YA DE +++L+ K+ E+ R+KGLGEM A QL Sbjct: 531 YIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNA----EVQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL++V I + ++ LMG + R ++I + +F Sbjct: 587 ETTMNPETRTLIQVRIQD----AALAERRVSTLMGDNVESRKEWINKNVNF 633 >gi|224283956|ref|ZP_03647278.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] gi|310286525|ref|YP_003937783.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17] gi|311063464|ref|YP_003970189.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010] gi|309250461|gb|ADO52209.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17] gi|310865783|gb|ADP35152.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010] Length = 720 Score = 572 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 248/705 (35%), Positives = 368/705 (52%), Gaps = 29/705 (4%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 L ++ Q ++ E+ D+ S D+YDAS +++LEGLE VR+RPG Sbjct: 23 PGSGLTASSAEQHDREVDEAIAQDELDDAQLDDTLSP-DHYDASDLKVLEGLEAVRIRPG 81 Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AGYA IEV++ + + VVD+GRGIPV+ P Sbjct: 82 MYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPVDEVP- 140 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q Sbjct: 141 GEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQT 200 Query: 184 FSRGIPLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 + P + L K + GT +TF PD IF +D L Q A+L+ + Sbjct: 201 YVNQHPTARLAKGAPMAEDESTGTSVTFWPDAAIFESTV-YDFETLRSRFQQMAFLNKGL 259 Query: 242 KTCWSCDKEI---------AEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTG 290 K + +E + P+ + + + G+K Y+ +++R E Sbjct: 260 KISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQYMNGIKDYVSYLVKSRKATPVEEDVI 319 Query: 291 KTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 E + + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 320 DFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARD 379 Query: 349 TQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 ++ ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D Sbjct: 380 KNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGD 439 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTE 465 + +P EA +++ IE S R+ +K RE R+ +I +P KL DC + E Sbjct: 440 WFDAHPAEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECE 499 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 LFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G Sbjct: 500 LFIVEGDSAGGSAIQGRNPETQAILPLRGKILNTERASIDRMMKSDTIESLITAVGGGYG 559 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ- 584 ++ +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 560 EEFDVSKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWT 619 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 Y + + + + L + K G+ I R+KGLGEM +L ET MD R L Sbjct: 620 RGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGIQRYKGLGEMTYQELWETTMDPEHRILK 679 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I ++ + LMG + R FIQ A + + Sbjct: 680 QIHIED----AAAADETFSMLMGDDVEPRRLFIQRNAKDVRFIDA 720 >gi|326692694|ref|ZP_08229699.1| DNA topoisomerase IV subunit B [Leuconostoc argentinum KCTC 3773] Length = 693 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 244/658 (37%), Positives = 359/658 (54%), Gaps = 33/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + G+ N I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGNDIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+PV H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R + + F + G P+ L GT + F+PDP +F Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFVNGGHPVDTLRDLGPTTEHSGTTVKFKPDPSLFSATV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + A+L VK + ++ E +++ GL++++ E++ Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFTLTDER-----VQPARVETYHYEKGLESFVGFLNEDK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 + I T + E+ G VE A + + E S+ N + T +GGTHE G R A T Sbjct: 237 ATIGPV-MTFEGEQSGI---VVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA + ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452 VE+ + + +L++N L+ I E R RK R+ +R + + L GK Sbjct: 353 VESIVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKSKGQKERLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKDATRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + ++ D ++K+IIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGNDFKVSDTAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532 Query: 573 FLISPPLFRITQGTKS---VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ +K +A + + I + + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYASKKMADKFAWTNDELEAITSQ----SDARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 ET M+ RTL+RV+I+ + + + LMG K + R +I+ F +D+ G+ Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRRDWIEANVHFTLDEAGS 642 >gi|326387941|ref|ZP_08209547.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326207987|gb|EGD58798.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 670 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 345/661 (52%), Positives = 450/661 (68%), Gaps = 14/661 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A+++YD S+I +LEGLEPVR RPGMYIGGTDE+ALHHL +EV+DNAMDE +AG Sbjct: 7 DKEPGSPAAESYDGSAIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEVLDNAMDEAVAG 66 Query: 93 YANLIEVSLDGN----GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AN IE++L+ G +T+ DNGRGIPV+ HPK+P KS LE+ILTTLH+GGKF Y Sbjct: 67 HANRIEITLEEEPGTPGRITISDNGRGIPVDEHPKYPGKSALEVILTTLHSGGKFSGKAY 126 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 SGGLHGVGISVVNALS V VAR +++Q+FSRG+ +PL + N+RGT +T Sbjct: 127 ATSGGLHGVGISVVNALSVLTRVEVARNKELYAQEFSRGLAQAPLARIGNAPNRRGTTVT 186 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD +IFG A F ARL ++ +SKAYL V+ W C +A +P + F FPGG Sbjct: 187 FVPDTEIFGADARFKPARLFRLARSKAYLYAGVEIRWKCSASLAGDD-VPAEATFQFPGG 245 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEK----KGTHRGTVEWAIAWC-EENPEITSYCNTIL 323 L +L ++ R +++ F G+ + G G VEWAIAW + + YCNTI Sbjct: 246 LADHLAEQVSGRECVTTMPFAGRQDFPHGPDGQEMGRVEWAIAWPLWSDGSYSYYCNTIP 305 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 T +GGTHE GLR ALTRGI+ + EL K+A I +D++ + +LSVFIR+P+F QT Sbjct: 306 TPDGGTHEQGLRAALTRGIRAFGELIGQKKAKDIAPEDMITGSEVMLSVFIRDPQFQSQT 365 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K +L S +A R VE A+RD FDH+L N LL V+ER +ERLRR+ +REV RKTA Sbjct: 366 KDRLTSPEAARLVEAAVRDHFDHFLTDNMDRGKALLGAVMERMDERLRRKAEREVKRKTA 425 Query: 444 I--RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 RKLRLPGKL DCS + TELFIVEGDSAGGSAKQAR+R QA+LP+RGKILNVAS Sbjct: 426 TNARKLRLPGKLTDCSGEGSGETELFIVEGDSAGGSAKQARDRKTQAILPIRGKILNVAS 485 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A ++KIR NQ+I DL ALGC TR + LRY+++IIMTDADVDGAHIA+LL+TFF+Q Sbjct: 486 ATADKIRANQEIADLGLALGCGTRKDCNADALRYDRIIIMTDADVDGAHIATLLMTFFFQ 545 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 EM +++ + HL+L PPL+R+T G+ S YA D+ H+ ++ K K+E+SRFKGLG Sbjct: 546 EMPEVVRRGHLYLAQPPLYRLTSGSTSAYARDDAHRAELETRMFK--GKKVEVSRFKGLG 603 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 EM QL+ET M R+L+R+ + + +D +++LMG + RF FIQ RA+ I Sbjct: 604 EMNPQQLRETTMSPASRSLIRITLPTEHEQRHAVKDLVDRLMGRNPEHRFMFIQNRAADI 663 Query: 682 D 682 D Sbjct: 664 D 664 >gi|260662108|ref|ZP_05863004.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN] gi|260553491|gb|EEX26383.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN] Length = 665 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI+IL+GLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V+++ Sbjct: 8 YDASSIKILKGLEAVRKRPGMYIGSTDVHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS +L +T+ R + + +KF G P+ L++ K R GT +TF+PDP IF Sbjct: 126 NALSSKLTLTIVRDHVCYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L VK + +E E ++E F F G++ ++ E++ Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFANGIEDFVDYLNEDKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + + + G V+ A + + E S+ N + T GGTHE G R A T+ Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA +R ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + + L++N A L++ + + R RK R +R + L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 + ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G K YA + L + K G + RFKGLGEM A QL Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I + + I LMG K + R ++I + F Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638 >gi|138895303|ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2] gi|134266816|gb|ABO67011.1| Topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2] Length = 617 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 237/629 (37%), Positives = 341/629 (54%), Gaps = 34/629 (5%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD + LHHL E++DN++DE +AGY N I V + + +TV+D GRG+PV H Sbjct: 1 MYIGSTDSRGLHHLVYEIVDNSVDEALAGYGNYILVQIHKDNSVTVLDEGRGMPVGMHK- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T E+ILT LHAGGKF Y+ SGGLHGVG SVVNALS+ L VT+ R I+ Q+ Sbjct: 60 -LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQR 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F G + NK GT I F+PDP IF FD L + + A+L +K Sbjct: 119 FENGGKPVTTLENIGTTNKTGTIIQFKPDPTIFSTTV-FDYETLSERLRESAFLLKGLKI 177 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 ++ +E F++ G++ ++ E + ++ E+ G VE Sbjct: 178 ELVDER-------TGMREVFHYENGIEAFVAYLNEEKDVLHPVA-YFAGEQNGI---EVE 226 Query: 304 WAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 +A + + E S+ N + T +GGTHE+G + A+TR +YA ++ ++ Sbjct: 227 FAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGT 286 Query: 361 DLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 D+ I+SV I E +F GQTK KL + +A+ V+ + + ++L +NP + L Sbjct: 287 DIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAML 346 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLADCSQNIAHGTELFIVEGDSAG 475 ++ I + R RK RE R RK + GKL EL++VEGDSAG Sbjct: 347 IKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAG 406 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQ R+R QAVLPLRGK++N A I N++I ++ A+G + + ED+ Y Sbjct: 407 GSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINY 466 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKS--VYA 591 +KVIIMTDAD DGAHI LLLTFFY+ M LIE +++ PPL++I++G K YA Sbjct: 467 DKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYA 526 Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 +E ++I ++ + I R+KGLGEM A QL ET M+ RTL+RV I Sbjct: 527 WTDEQLREITKKMGR----GYTIQRYKGLGEMNADQLWETTMNPETRTLIRVRIED---- 578 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680 + + LMG K + R K+I+ +F Sbjct: 579 AARAERRVTTLMGDKVEPRRKWIETHVAF 607 >gi|42561045|ref|NP_975496.1| DNA topoisomerase IV subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492542|emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321176|gb|ADK69819.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 643 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 244/644 (37%), Positives = 348/644 (54%), Gaps = 28/644 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S+I++LEGL+ VR RPGMYIG TD + LHHL E++DNA+DE +AGY I+V L+ Sbjct: 7 YDESAIQVLEGLDAVRKRPGMYIGSTDNRGLHHLVWEIVDNAIDEALAGYCTQIDVILEK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +T+ DNGRGIP H KST E+I + LHAGGKFD++ Y+ SGGLHGVG SV N Sbjct: 67 DNSITISDNGRGIPTGMHK--TGKSTPEVIFSILHAGGKFDSTAYKSSGGLHGVGSSVTN 124 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS T+ R I +F G L K GT I F PD IF + F+ Sbjct: 125 ALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANTYKTGTTINFLPDDSIFSN-TKFN 183 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 + + + + A L+ +K S E+ F GL +++ ++++ +I Sbjct: 184 FSLISERLKESALLNSGLKITLSD-------LISNRYVEYQFQYGLVEFIKELVDDKKVI 236 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343 + I K +++ ++N I + N + T +GGTH G + L R I Sbjct: 237 TDIITINNESKNIIAEIALQYTE---DDNEIILGFANNVKTSDGGTHLVGFKSGLIRAIN 293 Query: 344 KYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400 YA+ + K + S+DL V I++V I E E+ GQTK+KL + DA+ VE + Sbjct: 294 DYAKEQKILKDKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIV 353 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP---GKLADCS 457 + ++L++N + A K++E + R+ ++ R+ + +K GKL Sbjct: 354 YEFMSYWLIENKVLANKIIENAFNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLTPAQ 413 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 EL++VEGDSAGGSAK RNR QA+LPLRGK++N A + N++I ++ Sbjct: 414 GKKREINELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVINSEKAKLVDLLKNEEIQSII 473 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + D+ Y K+IIMTDAD DGAHI +LLLTFFY+ M DLI K +++ P Sbjct: 474 NAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVYIALP 533 Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL++IT KS Y DEE L EF K K EI R+KGLGEM A QL +T MD Sbjct: 534 PLYKITFNDKSFIYLWDEEE----LNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMDPK 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R +++V I L + LMG ++R +IQE F Sbjct: 590 NRKIIQVTITDGL----LAERMFKTLMGDDVEKRKLWIQENVKF 629 >gi|104773993|ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514009|ref|YP_812915.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423074|emb|CAI97795.1| DNA topoisomerase IV, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093324|gb|ABJ58477.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125698|gb|ADY85028.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 643 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 237/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I V Sbjct: 2 PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TV D GRG+P H + T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R + ++F G P+ L + K GT ITF+PDP IF Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ + + + A+L VK + ++ + F + G+++++ E Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVAYLNE 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 + I + + G +E+A + + E S+ N + T +GG+HE G R Sbjct: 233 GKGTIGKVF-YFEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288 Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 TR YA+ K+ ++ D +LSV I E EF GQTK KL + A+ Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 V++ + + +YL++N A L++ + R +K R+ +R +K L G Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKAQRARDAREAAKKARDESRNGKKRHKKEVLSG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI++ ++YA +E + + ++ K + RFKGLGEM A QL ET Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEYEKKVGK----GYALQRFKGLGEMNADQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L+RV I+ + + + LMG +A R K+I+E F Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629 >gi|184155379|ref|YP_001843719.1| DNA topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956] gi|183226723|dbj|BAG27239.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956] Length = 665 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI+IL+GLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V+++ Sbjct: 8 YDASSIKILKGLEAVRKRPGMYIGSTDAHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS +L +T+ R + + +KF G P+ L++ K R GT +TF+PDP IF Sbjct: 126 NALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L VK + +E E ++E F F G++ ++ E++ Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFANGIEDFVAYLNEDKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + + + G V+ A + + E S+ N + T GGTHE G R A T+ Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA +R ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + + L++N A L++ + + R RK R +R + L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 + ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G K YA + L + K G + RFKGLGEM A QL Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I + + I LMG K + R ++I + F Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638 >gi|260664458|ref|ZP_05865310.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US] gi|260561523|gb|EEX27495.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US] Length = 652 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 233/658 (35%), Positives = 355/658 (53%), Gaps = 33/658 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + +++YD SSI+IL GLE VR RPGMYIG TD K ++ L E++DN++DE +AGY Sbjct: 3 GKSLAKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYG 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V++ + +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGL Sbjct: 63 KEINVTIHEDNSVTVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG SVVNALS L V V R + ++F G P+ L+ K +K GT ITF+PD Sbjct: 121 HGVGSSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPD- 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + + + + + A+L VK ++ EEF + G+K+++ Sbjct: 180 ERVFSTTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHES 332 E + ++F + ++ +E++ + + E S+ N + T +GG+HE Sbjct: 234 SYLNEGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEM 289 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLV 388 G R TR YA+ ++ +I D +LS+ + E EF GQTK KL Sbjct: 290 GARSGFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLG 349 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RK 446 + A+ V+ + + +YL++N A L++ + + R +K R+ +R +K Sbjct: 350 TPQARSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKK 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 410 ELLSGKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQD 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 I N++I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M + Sbjct: 470 IFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPM 529 Query: 567 IEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +E +++ PPL+R+ +G+ K YA +E ++ + K + RFKGLGE Sbjct: 530 VEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGE 585 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M A QL +T M+ + R L+RV+I+ + + LMG K + R K+I++ F Sbjct: 586 MNADQLWQTTMNPDSRMLIRVKIDD----AALAERRVTTLMGDKVEVRRKWIEQNVKF 639 >gi|227515151|ref|ZP_03945200.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227086483|gb|EEI21795.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|299783206|gb|ADJ41204.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum CECT 5716] Length = 665 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 359/651 (55%), Gaps = 34/651 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI+IL+GLE VR RPGMYIG TD LHHL E++DNA+DE ++G+ + I V+++ Sbjct: 8 YDASSIKILKGLEAVRKRPGMYIGSTDAHGLHHLVYEIVDNAVDEALSGFGDEINVTIEP 67 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV D+GRG+PV H K T E+I+T LHAGGKF Y+ SGGLHGVG SVV Sbjct: 68 DNAITVQDHGRGMPVGMHE--SGKPTPEVIMTILHAGGKFGQADGYKSSGGLHGVGASVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS +L +T+ R + + +KF G P+ L++ K R GT +TF+PDP IF Sbjct: 126 NALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPDPTIFSTTV- 184 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L + + A+L VK + +E E ++E F F G++ ++ E++ Sbjct: 185 YDYQTLARRLRESAFLLKGVKITLTDKREGME-----QEEVFQFENGIEDFVAYLNEDKD 239 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 + + + G V+ A + + E S+ N + T GGTHE G R A T+ Sbjct: 240 TLGKVF-SFTGTQDGV---EVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTV 396 YA +R ++ D+ ++SV I E +F GQTK KL + +A++ V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL---RLPGKL 453 + + + + L++N A L++ + + R RK R +R + L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 + ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + + N+++ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE ++ Sbjct: 476 NTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRVY 535 Query: 574 LISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 + PPL+R+ +G K YA + L + K G + RFKGLGEM A QL Sbjct: 536 IAMPPLYRLQKGRGKNTKITYAWTNDE----LTKLTKKGSKGTSLQRFKGLGEMNADQLW 591 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL+RV I + + I LMG K + R ++I + F Sbjct: 592 ETTMNPETRTLIRVRIED----AELAEKRITTLMGNKVEPRREWIDQNVHF 638 >gi|295115103|emb|CBL35950.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SM4/1] Length = 639 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 245/657 (37%), Positives = 345/657 (52%), Gaps = 35/657 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YDA SI +LEGLE VR RPGMYIGG K L+HL E++DN++DE +AG I V+L+ Sbjct: 5 QYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECTSIWVTLE 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV DNGRGIPVE H K S ++L+TLHAGGKFDNS Y+ SGGLHGVG SVV Sbjct: 65 ADGSCTVRDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVGSSVV 122 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPKIFG 217 NALS+ L + + + I + RGIP+ L K + GT I F PD IF Sbjct: 123 NALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGKTKE-TGTCINFLPDDTIFE 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F A L AYL+ + + + E+ + + P G+ Y++ Sbjct: 182 K-TKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIV-----YSEPDGIIAYVKEIN 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 ++ + K +G VE AI + + E +CN I T EGGTH +G + Sbjct: 236 AGKTPVHEP-IYFKGSMEGI---EVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKT 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 T I YA ++ + D ++++ +P F GQTKTKL S DA + Sbjct: 292 KFTMLINSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATK 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V + + +N ++ + ++ R K + + GKL+ Sbjct: 352 AVFTLAGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDSNGKLS 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 +C A E+FIVEGDSAGGSAK RNR QA+LP+RGKILNV A +K+ N +I Sbjct: 412 NCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIK 471 Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ A GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M DLI + Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEG 531 Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPLF++ + + Y +DE K LE++KK G + R+KGLGEM A QL Sbjct: 532 HVYIAMPPLFKVIPKKGEEQYLYDE----KALEKYKKTHAGGFTLQRYKGLGEMDAEQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET ++ R L +VEI + + T+ LMG+ R +FI + A + + Sbjct: 588 ETTLNPENRVLKQVEIEDARMASEITE----MLMGSDVPPRRQFIYDHAEEAE-IDA 639 >gi|323342062|ref|ZP_08082295.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464487|gb|EFY09680.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Erysipelothrix rhusiopathiae ATCC 19414] Length = 639 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 239/649 (36%), Positives = 365/649 (56%), Gaps = 31/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NY ASSI ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY I + Sbjct: 5 STQNYSASSIEILEGLEAVRKRPGMYIGSTDSRGLHHLVWEIMDNAIDEALNGYGTTIRL 64 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158 +++ + +++ D GRG+P+E H S L++I T LHAGGKF Y+ SGGLHGVG Sbjct: 65 NIEDDMTVSIRDEGRGMPIETH--TSGVSALQVIFTVLHAGGKFSEAGGYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+E++V+V R++ ++ F G KK R G+R+ F+ DP IF + Sbjct: 123 ASVVNALSEEVNVSVFRKDGTYNMTFRNGGKEIEPLKKTSDRGPIGSRVRFKADPTIFKN 182 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + + Q A+L ++ + ++ + + + GL+ +++ E Sbjct: 183 S-KFSFDTICERVQESAFLLQGIQFIVTDERVNVTRE-------YRYEKGLEAFMEYIHE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ +++ I +++ +V+ A+ + E + SY N + T +GGTH +G R Sbjct: 235 DQEVLNDVILLNGSDQ----GISVQIALQYNEGYNEDTYSYVNLVRTHDGGTHVAGFRSG 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ I ++A + + +D+ ILSV I E +F GQTK KL + A+ Sbjct: 291 FTKVINEWARKHNLLKDKEKNFEGNDVREGLSVILSVSIPENLLQFEGQTKGKLGTPVAK 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--G 451 V+ + + +YL + EATK++ + + S RL RK RE R K+ G Sbjct: 351 GVVDAVISEQLPYYLDVHHEEATKIITKIQKASHARLAARKAREQARNGKRNKIERILSG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+ + EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A E I N+ Sbjct: 411 KLANAQTRNKNKNELYLVEGDSAGGSAKQGRDSKFQAILPLRGKVLNTQKAKFEDILKNE 470 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ ++ +G + +D Y K+IIMTDAD DGAHI LLLTFF++ M L+E + Sbjct: 471 ELNTIIHCVGAGVGKDFELKDCNYNKIIIMTDADTDGAHIQVLLLTFFFRHMRPLVEAGY 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+R+ G YA+ E+ +++ GKIE+ R+KGLGEM A QL ET Sbjct: 531 VYIAQPPLYRVKSGKNVHYAYTEDELDAFRKQY-----GKIELQRYKGLGEMNADQLWET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD R+L++V+IN L ++ LMG K D R ++I++ +F Sbjct: 586 TMDPETRSLIQVQINDFLV----ADKRVSVLMGDKVDVRREWIEQNVAF 630 >gi|325686241|gb|EGD28284.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 643 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 237/649 (36%), Positives = 351/649 (54%), Gaps = 29/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I V Sbjct: 2 PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TV D GRG+P H + T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R + ++F G P+ L + K GT ITF+PDP IF Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ + + + A+L VK + ++ + F + G+++++ E Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVSYLNE 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 + I + + G +E+A + + E S+ N + T +GG+HE G R Sbjct: 233 GKGTIGKVFC-FEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288 Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 TR YA+ K+ ++ D +LSV I E EF GQTK KL + A+ Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 V++ + + +YL++N A L++ + + R +K R+ +R +K L G Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI++ ++YA +E + + ++ K + RFKGLGEM A QL ET Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGK----GYALQRFKGLGEMNADQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L+RV I+ + + + LMG +A R K+I+E F Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629 >gi|295110276|emb|CBL24229.1| DNA topoisomerase IV subunit B [Ruminococcus obeum A2-162] Length = 641 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 246/661 (37%), Positives = 347/661 (52%), Gaps = 36/661 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY +LI Sbjct: 2 AKKETYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSLIH 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFDNS Y+ SGGLHGVG Sbjct: 62 VVLEKDGSCTVTDNGRGIPVDMHEK--GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS L + V+R + + +G+P LE K + + GT I F PDP Sbjct: 120 SSVVNALSTYLDIKVSRDGYVHHDHYEQGVPTLELENGLLPKLGRTKE-TGTCINFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F A + AYL+ + + + KEE++ P G+ Y+ Sbjct: 179 EIFEK-TRFSATDVKSRLHETAYLNPELTIVFEDLR-----GTETVKEEYHEPEGIVGYI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q + + K E G VE A + E + +CN I EGGTH + Sbjct: 233 QDMNHSTEALHEP-VYLKGEADGIQ---VEVAFQYTNEFRENVLGFCNNIYNAEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + YA + + D+ ++S+ P F GQTKTKL + Sbjct: 289 GFKTTFTTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + L + Y +N +L + ++ R + + Sbjct: 349 DAAKATGKVLGEQLVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C + E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCEKKDPAQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K++IM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 I + H+++ PPL++ +G + Y +D++ +K K H G + R+KGLGEM Sbjct: 529 IYEGHVYIAMPPLYKAMPKKGPEE-YLYDDKALEKYR---KTHKPGSFTLQRYKGLGEMD 584 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET ++ R + RVEI + T+ LMG++ R FI E A+ + + Sbjct: 585 AEQLWETTLNPETRRMKRVEIEDARLASSVTE----VLMGSEVPPRKAFIYEHAADAE-L 639 Query: 685 G 685 Sbjct: 640 D 640 >gi|241896016|ref|ZP_04783312.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC 33313] gi|241870747|gb|EER74498.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC 33313] Length = 675 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 248/663 (37%), Positives = 365/663 (55%), Gaps = 35/663 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++Y SI +LEGLE VR RPGMYIG TD K LHHL E+ DNA+DE +AGY + I Sbjct: 2 TKKNDYSDDSITVLEGLEAVRKRPGMYIGSTDGKGLHHLVYEIFDNAVDEALAGYGDEIN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ N +TVVD+GRG+PV H K T E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHENNAITVVDHGRGMPVGMH--SSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS +L VT+ R + + F + G P L+K K + GT +TF+PD KIF Sbjct: 120 SSVVNALSSDLVVTIVRDGVKYQEHFINGGHPDGTLKKIGKTKETSGTTVTFKPDSKIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 ++ L + + A+L VK + ++ E + E ++FP G+K ++ Sbjct: 180 TTI-YNFNTLAERLRESAFLLRNVKITLTDERPGQE-----QTETYHFPEGIKAFVDYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E++ + + + +G VE + + + + S+ N + T +GGTHE+GLR Sbjct: 234 EDKDTLGDIM-YFEGIAQGV---EVEVSAQYNDGFSETMMSFVNNVRTPDGGTHEAGLRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 A T+ +YA ++ ++ D+ ++S+ I E +F GQTK KL + +A Sbjct: 290 AWTKAFNEYARRVNLLKEKDKNLEGSDVREGLSAVISLRIPENILQFEGQTKEKLGTPEA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---L 449 + V+N + + YL++N + L+ + E R RK R+ R + L Sbjct: 350 RTIVDNIITEQLGFYLMENGEFSQSLIRKSLRAREAREAARKARDEARSGKKKGKSERLL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL A+ ELF+VEGDSAGGSAKQ RNR QA+LPLRGK+LN A + I Sbjct: 410 SGKLTPAQSKNANQNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIMK 469 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G +++ D Y+K+IIMTDAD DGAHI +LLLTFFY+ M LI+ Sbjct: 470 NEEISTIIYTIGAGVGPEFKVADANYDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIDA 529 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 +++ PPL+ + +G K YA + E + + RFKGLGEM A Sbjct: 530 GKVYIALPPLYMLRKGKGKQQKIEYAWTDSQLATAEETIGR----GYTLQRFKGLGEMNA 585 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDD 683 QL T MD +RTL+RV+I+ + + + LMG K + R K+I+ +F +++ Sbjct: 586 EQLWATTMDPTQRTLIRVKIDDAM----LAEKRVTTLMGDKVEPRRKWIESNVAFNLVEE 641 Query: 684 VGT 686 T Sbjct: 642 GDT 644 >gi|225572725|ref|ZP_03781480.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM 10507] gi|225039898|gb|EEG50144.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM 10507] Length = 641 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 244/660 (36%), Positives = 350/660 (53%), Gaps = 34/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA+SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I Sbjct: 2 AKKNTYDAASISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSHIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VVLEKDGSCTVSDNGRGIPVDLHEK--GMSAERLVFTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS L + ++R I + RGIP LE + K + GT + F PDP Sbjct: 120 SSVVNALSTYLDIKISRDGYIHHDHYERGIPTIELENGLLPRIGKTKE-TGTCVNFSPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F A + AYL+ + + + +K ++ P G+ ++ Sbjct: 179 EIFEK-TRFSATEVKSRLHETAYLNPALTIEFEDSR-----AETAQKVVYHEPEGIVGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + +++ ++ K E +G +VE A + E E +CN I EGGTH + Sbjct: 233 RELNQSKEVLHKP-VFLKGESEGI---SVEAAFQFTNEFHENVLGFCNNIYNAEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + YA ++ + D+ ++S+ P F GQTKTKL + Sbjct: 289 GFKTTFTSVMNTYARELGVLKEKDSNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA R L + Y +N E +L + ++ R + + Sbjct: 349 DAARVTGKVLGEQLVLYFDRNLEELKAVLSCAEKAAKIRKTEERAKTNLLSKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C + E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCEKKDPSVCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL+++ + Y +D++ ++ K H G + R+KGLGEM A Sbjct: 529 IYEGHVYIAMPPLYKVMPKKGAEEYLYDDKALERYR---KTHKSGTFTLQRYKGLGEMDA 585 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L RVEI + T+ LMGT+ R FI E A + Sbjct: 586 QQLWETTLNPQTRILRRVEIEDARLASSVTE----VLMGTEVPPRKAFIYEHAQDA-QLD 640 >gi|300812413|ref|ZP_07092843.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496580|gb|EFK31672.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 643 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 236/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I V Sbjct: 2 PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TV D GRG+P H + T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R + ++F G P+ L + K GT ITF+PDP I Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDP-IIFS 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ + + + A+L VK + ++ + F + G+++++ E Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTPK------HHDVFQYDDGIESFVSYLNE 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 + I + + G +E+A + + E S+ N + T +GG+HE G R Sbjct: 233 GKGTIGKVFC-FEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288 Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 TR YA+ K+ ++ D +LSV I E EF GQTK KL + A+ Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 V++ + + +YL++N A L++ + + R +K R+ +R +K L G Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI++ ++YA +E + + ++ K + RFKGLGEM A QL ET Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGK----GYALQRFKGLGEMNADQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L+RV I+ + + + LMG +A R K+I+E F Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629 >gi|238855703|ref|ZP_04646000.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3] gi|282932217|ref|ZP_06337664.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] gi|238831688|gb|EEQ24028.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3] gi|281303667|gb|EFA95822.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] Length = 647 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 233/654 (35%), Positives = 354/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +++YD SSI+IL GLE VR RPGMYIG TD K ++ L E++DN++DE +AGY I Sbjct: 2 AKANSYDDSSIQILHGLEAVRKRPGMYIGSTDIKGINQLVYEIVDNSVDEAMAGYGKEIN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H T+E+I T LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHEDNSVTVQDFGRGMPTGMHE--SGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V V R + ++F G P+ L+ K +K GT ITF+PD + Sbjct: 120 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPD-ERVF 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK ++ EEF + G+K+++ Sbjct: 179 STTKYKYETIEERIRESAFLLKGVKFTLKDERTPN------HYEEFLYTDGIKSFVSYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + ++F + ++ +E++ + + E S+ N + T +GG+HE G R Sbjct: 233 EGKDTFG-DVFYFEGKQDSI---EIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ ++ +I D +LS+ + E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V+ + + +YL++N A L++ + + R +K R+ +R +K L Sbjct: 349 RSAVDALVYEKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M ++E Sbjct: 469 EEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G+ K YA +E ++ + K + RFKGLGEM A Sbjct: 529 RVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGK----GYSLQRFKGLGEMNAD 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ + R L+RV+I+ + + LMG K + R K+I++ F Sbjct: 585 QLWQTTMNPDSRMLIRVKIDD----AALAERRVTTLMGDKVEVRRKWIEQNVKF 634 >gi|308069402|ref|YP_003871007.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681] gi|305858681|gb|ADM70469.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681] Length = 659 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 237/668 (35%), Positives = 352/668 (52%), Gaps = 39/668 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + QS + Y A I++LEGL VR RPGMYIG T LHHL E++DNA+DE + Sbjct: 8 SAGVSGTQSGASEYGADDIQVLEGLVAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHL 67 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 A + + I++++ +G +TV DNGRGIP H T +++ T LHAGGKF S Y+ Sbjct: 68 AKFCSRIDITMHKDGSITVSDNGRGIPTGMHK--TGIPTPQVVFTILHAGGKFGGSGYKK 125 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVR 200 SGGLHGVG SV NALS+ L V + R I Q+F G P + LE Sbjct: 126 SGGLHGVGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNTN 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 G++ITF+PD ++F F+ L + Q A+L+ ++ ++ + Sbjct: 186 K-TGSKITFKPDIRVFQAGIHFNYDTLAERLQEIAFLNSGLRIQLKDERS-------GKS 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 +E+++ GG ++ E + ++ I ++ +++ + E I S+ N Sbjct: 238 DEYFYEGGASQFVAFLNEGKDVLHDVIHFNAEKEDIEVEIAIQYNAGYTET---IASFVN 294 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPE 378 +I T GGTHE+G + A TR + YA ++ ++ +DL + ++SV + E E Sbjct: 295 SIPTRGGGTHETGFKTAYTRVMNDYARKTVMLKEKDKNLEGNDLREGMMAVISVKMAEVE 354 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK--QR 436 F GQTK +L S A+ TV+ + + +L +NP A L++ ++ S R RK Sbjct: 355 FVGQTKDQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIKKAVQASRAREAARKARDE 414 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + K L GKL+ ELFIVEGDSAGGSAKQ R+ QA+LPL+GK Sbjct: 415 MRSGKKRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKP 474 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 +N + I N + + A+G +++ ED Y K+IIMTDAD DGAHI LLL Sbjct: 475 MNPEKSKLADIMKNDEYRAITAAIGAGVGTEFSLEDSNYSKIIIMTDADTDGAHIQVLLL 534 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKI 612 TFFY+ M +LI+ +F+ PPL++IT+ + YA +E L+EF ++ Sbjct: 535 TFFYRYMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRN----F 590 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 E+ R+KGLGEM QL ET M+ + RTLLRV+I + ++ LMG K D R + Sbjct: 591 ELQRYKGLGEMNPDQLWETTMNPDSRTLLRVQIED----AAKAERRVSTLMGDKVDPRKR 646 Query: 673 FIQERASF 680 +I E F Sbjct: 647 WIVENVDF 654 >gi|254456050|ref|ZP_05069479.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083052|gb|EDZ60478.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 686 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 278/698 (39%), Positives = 387/698 (55%), Gaps = 65/698 (9%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 TNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V ++ +G +TV D+GRGIPV+ H K KS E+I+T LHAGGKFD+ +Y++SGGLHGV Sbjct: 62 NVRINSDGTITVNDDGRGIPVDMH-KGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L + + R +F G ++PL+ K +N GT+ITF P +IF Sbjct: 121 GVSVVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSKN-SGTQITFLPSKEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F A L+K + A+L+ +K ++ EK F F GG+ ++ Sbjct: 180 S-IKFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSE-----FKFDGGVLEFVNFLD 233 Query: 278 ENRSLIS--------SEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328 E R + + + +K +++W ++ E +I Y N I +GG Sbjct: 234 EKREKLQNKNGNDLFKKPIYIEGKKDNIELECSLKWNASYAE---DIFPYTNNIFQKDGG 290 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH G R ALTR + KYA K ++I DD+ +LS I +P+F+ QTK K Sbjct: 291 THLLGFRSALTRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDK 350 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445 LVS + + VE + + + QNP A +L VI+ + R RK RE RK A+ Sbjct: 351 LVSSEVRMIVETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALE 410 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500 LPGKLADC GTELFIVEGDSAGGSAKQ RNR+NQAVLPLRGKILN Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLS 470 Query: 501 --------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDAD 545 + K+ ++ +I+ L+ ALG ++Q + +DLRY K+IIMTDAD Sbjct: 471 VKKNGNGDASEQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDAD 530 Query: 546 VDGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL--- 601 VDG+HI +LLLTFF + LIE H++L PPLF+I +GTK +Y DE + + Sbjct: 531 VDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKN 590 Query: 602 -EEFKKHGKG-------------KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647 +E KK KG K+ I RFKGLGEM +L T +D R LL+V+ +K Sbjct: 591 SKELKKIKKGSKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYSK 650 Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 DL + I+ LMG R FI A + ++ Sbjct: 651 DLKKDQS---LIHTLMGNDVALRKDFIISNAINVQNLD 685 >gi|313884999|ref|ZP_07818751.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619690|gb|EFR31127.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 691 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 240/663 (36%), Positives = 356/663 (53%), Gaps = 37/663 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYD SI+ILEGL+ VR RPGMYIG TD + LHHL E++DN++DE ++GY + I+ Sbjct: 4 KTNANYDDQSIQILEGLDAVRKRPGMYIGSTDHRGLHHLVYEIVDNSVDEALSGYCDAIK 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRG+PV H T+++I T LHAGGKF Y+ +GGLHGVG Sbjct: 64 VELLKDGSIRVTDNGRGMPVGMH--ASGVPTIQVIFTVLHAGGKFGQGGYKSAGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKE-KVRNKRGTRITFRPDPKIF 216 SVVNALS L V V R + F G P +K K +N+ GT++ F PD KIF Sbjct: 122 ASVVNALSSWLTVQVKRDGYTYEMNFKDGGHPEGKFKKIPNKQKNESGTQVHFMPDAKIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 G +L+ + A+L + + ++ E E F++ GLK +++ Sbjct: 182 GAN-SIKYETILERLRESAFLLKGLTIEITDERSDKE-------ETFHYEEGLKDFIKYL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 E + S + T +E+A + + I S+ N + T GGTHE+G + Sbjct: 234 NEEKHTFSDTAYASGTVDD----FEIEFAFQYNDGYSETIMSFANNVRTSMGGTHETGFK 289 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLD 391 LT+ Y T ++ ++ D+ +LS+ + E +F GQTK KL + Sbjct: 290 TGLTKAFNDYGRRTGIIKEKDKNLDGSDIREGIAAVLSIRVPEAYLQFEGQTKEKLGTPK 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR--- 448 A+ V+N + + +L +N +A +LL ++ R RK R+ +R A R + Sbjct: 350 ARSLVDNFVTEAVTLFLNENGPQAQELLRKAVKARNTREAARKARDASRSGAKRSQQERL 409 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 + GKL A EL++VEGDSAGGSAK RN QA+LPLRGK++N A I Sbjct: 410 ISGKLTKAQSKDAKMNELYLVEGDSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIM 469 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N++I ++ +G + + ED+ Y+KVIIMTDAD DGAHI LLLTFFY+ M L+E Sbjct: 470 KNEEINTMIYTIGAGVGADFNIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLE 529 Query: 569 QKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 ++L PPL++I++G+ K YA E + ++ K + R+KGLGEM Sbjct: 530 AGKVYLAMPPLYKISKGSGKKEKIEYAWTNEELKVATQKIGK----GYILQRYKGLGEMN 585 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683 A QL +T M+ + R L+RV + ++ + LMG K + R K+I++ F +D+ Sbjct: 586 ADQLWDTTMNPDTRLLIRVTVED----AALSERRLTTLMGAKVEPRRKWIEDNVKFTLDE 641 Query: 684 VGT 686 T Sbjct: 642 EDT 644 >gi|295693010|ref|YP_003601620.1| DNA topoisomerase iv, b subunit [Lactobacillus crispatus ST1] gi|295031116|emb|CBL50595.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus ST1] Length = 648 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 243/654 (37%), Positives = 356/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VTIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K + GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K++++ Sbjct: 180 T-TKYKYETIQERIRESAFLLKGVKFVLTDEREPE------HHDVFQYDDGIKSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L + +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|313141108|ref|ZP_07803301.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] gi|313133618|gb|EFR51235.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] Length = 694 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 244/700 (34%), Positives = 364/700 (52%), Gaps = 28/700 (4%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 + + + + D + + D+YDAS +++LEGLE VR+RPGMYIG Sbjct: 1 MTASSAEQHDREVDEAIAQDELDDAQLDDTLSPDHYDASDLKVLEGLEAVRIRPGMYIGS 60 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T + LHHL E++DN++DE +AGYA IEV++ + + VVD+GRGIPV+ P S Sbjct: 61 TGPRGLHHLVYEIVDNSVDEALAGYATHIEVTILPDNGIRVVDDGRGIPVDEVP-GEGVS 119 Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188 +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + Sbjct: 120 GVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDIEVRRQGFHWTQTYVNQH 179 Query: 189 PLSPLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 P + L K + GT +TF PD IF +D L Q A+L+ +K + Sbjct: 180 PTARLAKGAPMAEDESTGTSVTFWPDAAIFESTV-YDFETLRSRFQQMAFLNKGLKISLT 238 Query: 247 CDKEI---------AEKYGIPEKE--EFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-K 294 +E + P+ + + + G+K Y+ +++R E E + Sbjct: 239 DLREPDLAGDEVAGDDDSTEPKHQSVTYQYMNGIKDYVSYLVKSRKATPVEEDVIDFEAE 298 Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA Sbjct: 299 DLKIGISAEVAMQWTTAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYARDKNILK 358 Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411 ++ ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + D + + Sbjct: 359 EKDDNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAH 418 Query: 412 PIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVE 470 P EA +++ IE S R+ +K RE R+ +I +P KL DC + ELFIVE Sbjct: 419 PAEAKNIIQKAIEASRARIAAKKARENTRRKSIFESAGMPDKLKDCQSSNPEECELFIVE 478 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A+G ++ Sbjct: 479 GDSAGGSAIQGRNPETQAILPLRGKILNTERASIDRMMKSDTIESLITAVGGGYGEEFDV 538 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSV 589 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ Sbjct: 539 SKVRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWTRGDHD 598 Query: 590 YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 Y + + + + L + K G+ I R+KGLGEM +L ET MD R L ++ I Sbjct: 599 YVYTDRERDEKLAQGKAAGRQLPKGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIE 658 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + R FIQ A + + Sbjct: 659 D----AAAADETFSMLMGDDVEPRRLFIQRNAKDVRFIDA 694 >gi|78707365|gb|ABB46488.1| DNA gyrase subunit B [Acholeplasma pleciae] Length = 587 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 235/605 (38%), Positives = 357/605 (59%), Gaps = 20/605 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 V+ RPGMYIG T E+ LHHL E++DN++DE + GYA+ I + + + V DNGRGIP Sbjct: 1 VKKRPGMYIGSTGERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HPK + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS+ V + + Sbjct: 61 VDTHPK-TGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDG 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 I+ QK+ RGIP L+ ++ GT I+F+ DP IF + ++ L Q A+L Sbjct: 120 VIYEQKYERGIPAYDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + +K D+ + + E F++ GG+ Y++ + ++ I +I + E+ Sbjct: 179 NKGLKLNLIDDR-----FEEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDI 233 Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 T+E A+ + + + N I T EGG HE G ++ALTR I KYA+ + K+ S Sbjct: 234 ---TIELALQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADELKMKKDDS 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 I +D I+SV EP+F GQTKTKL + + + + + +L++NP +A Sbjct: 291 ISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++E V+ + R+ RK ++ RK+ + L KLADC +E++IVEGDSAG Sbjct: 351 AIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQ R+ QA++PLRGK+LNV A +K+ +N++I++L+QA+G ++ RY Sbjct: 411 GSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKARY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEE 595 K++IMTDADVDGAHI +LLLTF ++ M LI+ +++ PPL++++ G S YA+ E+ Sbjct: 471 HKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQ 530 Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 IL++ + K I R+KGLGEM A QL +T MD KRTLL++++ + D Sbjct: 531 ELNIILKKIE----TKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKLEDAI----DA 582 Query: 656 QDSIN 660 + Sbjct: 583 DQVFS 587 >gi|319776855|ref|YP_004136506.1| topoisomerase iv subunit b [Mycoplasma fermentans M64] gi|238809640|dbj|BAH69430.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318037930|gb|ADV34129.1| Topoisomerase IV subunit B [Mycoplasma fermentans M64] Length = 637 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 241/648 (37%), Positives = 351/648 (54%), Gaps = 29/648 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD SSI+ L+GLE VR RPGMYIG TD LHHL E++DN++DE +AGYAN I V+L Sbjct: 2 QKYDESSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGYANEISVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 NG + V+DNGRGIPV P KS +E++ T LHAGGKF+ Y+ SGGLHGVG SV Sbjct: 62 TKNGSVKVMDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L VTV R I+ F G + + NK GT + F P+ +IF A Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNTNKHGTMVEFWPNYEIFKR-AK 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L G ++ + + E F + GL ++ ++++ Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISDRETE-------FMYEDGLHAFVDFINDSKN 231 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + +T++ ++ ++ N + S+ N + T +GGTHE GL+ ALT+ Sbjct: 232 ALGDIKTFKETKRDIEVECGFQYTDSY---NETVLSFVNNVKTKDGGTHEIGLKSALTKT 288 Query: 342 IKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 ++A + + + DD+ ILSV I E EF QTK KL + +A+ VE Sbjct: 289 FNEFALEEKALKGKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEE 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLAD 455 + F ++ +N A K+LE + SE R RK R R T K L GKL Sbjct: 349 IVSKNFKIWINENKPLAKKILEKIKRASESRAAARKARAEARSTKNALKEKQILSGKLTP 408 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A +I N++I Sbjct: 409 AQSKVPAEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGT 468 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G ++ + +Y KV+IMTDAD DGAHI LLLTFF++ M L+E +++ Sbjct: 469 IINTIGAGVGDEFDLKKAQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIA 528 Query: 576 SPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPLF++T + +YA DE +++L+ E+ R+KGLGEM A QL ET Sbjct: 529 LPPLFKLTSTRGKKEVLYAWDENELRELLQ-LPNFKNA--EVQRYKGLGEMNADQLWETT 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL++V+I + ++ LMG + R ++I + F Sbjct: 586 MNPITRTLVQVKIED----AALAERRVSTLMGDNVEPRKEWINKNVEF 629 >gi|283797751|ref|ZP_06346904.1| DNA gyrase, B subunit [Clostridium sp. M62/1] gi|291074426|gb|EFE11790.1| DNA gyrase, B subunit [Clostridium sp. M62/1] Length = 639 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 244/657 (37%), Positives = 344/657 (52%), Gaps = 35/657 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YDA SI +LEGLE VR RPGMYIGG K L+HL E++DN++DE +AG I V+L+ Sbjct: 5 QYDADSITVLEGLEAVRKRPGMYIGGVGTKGLNHLIYEIVDNSVDEHLAGECTSIWVTLE 64 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV DNGRGIPVE H K S ++L+TLHAGGKFDNS Y+ SGGLHGVG SVV Sbjct: 65 ADGSCTVRDNGRGIPVEMHKK--GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVGSSVV 122 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPKIFG 217 NALS+ L + + + I + RGIP+ L + GT I F PD IF Sbjct: 123 NALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGNTKE-TGTCINFLPDDTIFE 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F A L AYL+ + + + E+ + + P G+ Y++ Sbjct: 182 K-TKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIV-----YSEPDGIIAYVKEIN 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 ++ + K +G VE AI + + E +CN I T EGGTH +G + Sbjct: 236 AGKTPVHEP-IYFKGSMEGI---EVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKT 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 T I YA ++ + D ++++ +P F GQTKTKL S DA + Sbjct: 292 KFTMLINSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATK 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V + + +N ++ + ++ R K + + GKL+ Sbjct: 352 AVFTLTGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDSNGKLS 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 +C A E+FIVEGDSAGGSAK RNR QA+LP+RGKILNV A +K+ N +I Sbjct: 412 NCESRDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIK 471 Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ A GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M DLI + Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEG 531 Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPLF++ + + Y +DE K LE++KK G + R+KGLGEM A QL Sbjct: 532 HVYIAMPPLFKVIPKKGEEQYLYDE----KALEKYKKTHAGGFTLQRYKGLGEMDAEQLW 587 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ET ++ R L +VEI + + T+ LMG+ R +FI + A + + Sbjct: 588 ETTLNPENRVLKQVEIEDARMASEITE----MLMGSDVPPRRQFIYDHAEEAE-IDA 639 >gi|313678724|ref|YP_004056464.1| DNA topoisomerase IV subunit B [Mycoplasma bovis PG45] gi|312950293|gb|ADR24888.1| DNA topoisomerase IV, B subunit [Mycoplasma bovis PG45] Length = 638 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 354/651 (54%), Gaps = 32/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NYDASSI+ L+GLE VR RPGMYIG TD LHHL E++DN++DE +AG AN I V Sbjct: 2 SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGEANEIAV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V DNGRGIPV P KS +E++ T LHAGGKF+ Y+ SGGLHGVG Sbjct: 62 ILKNDGSVVVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L V R I+ F G + NKRGT I F P+ +IF Sbjct: 120 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTLIQFWPNYEIFKK- 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F+ + + + ++L + + + EEF + G+K +++ ++ Sbjct: 179 AKFNFETIAERLRESSFLISNLSIKLLDE-------QSGKSEEFKYSNGIKAFVEFINDS 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + + K + +E + + N I S+ N + T +GGTHE GL+ A+ Sbjct: 232 KTALFNVYSF----KTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 287 Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 T+ +A + + + +D+ +LSV I E EF QTK KL + +A+ Sbjct: 288 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSA 347 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE A+ ++ +N A K+L+ + S+ R RK R RKT + L GK Sbjct: 348 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A I N++ Sbjct: 408 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEE 467 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A+G + ++Y+KVIIMTDAD DGAHI LLLTFF++ M LIE+ + Sbjct: 468 INTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKV 527 Query: 573 FLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPLF+++ K +YA DE+ +++L+ E+ R+KGLGEM A QL Sbjct: 528 YIALPPLFKLSINKAQKKILYAWDEDELKELLQ----SKMKGAEVQRYKGLGEMNADQLW 583 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL++V I + ++ LMG D R ++I + +F Sbjct: 584 ETTMNPKTRTLIQVRIQD----AALAERRVSTLMGDNVDSRKEWINKNVNF 630 >gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis] Length = 588 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 243/604 (40%), Positives = 358/604 (59%), Gaps = 20/604 (3%) Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T K LHHL E++DN++DE +AGY I + ++ + +TVVDNGRGIPV H K Sbjct: 1 GSTSSKGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKM-G 59 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 + +E+I+T LHAGGKFD S Y++SGGLHGVG SVVNALS EL VTV R I Q + R Sbjct: 60 RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKR 119 Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 G+P++ LE + + GT F PDP+IF + +D L + A+L+ V Sbjct: 120 GVPVTDLEIIGET-DHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIE 178 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 +E E+ +++ GG+K+Y++ ++ ++ E + EK G TVE A+ Sbjct: 179 DKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGI---TVEVAL 230 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLM 363 + + I S+ N I T EGGTHE+G + LTR I YA + ++ DD+ Sbjct: 231 QYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVR 290 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+S+ +P+F GQTKTKL + +A+ + + ++++NP A K+++ + Sbjct: 291 EGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGL 350 Query: 424 ERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + R+ +K RK+A+ LPGKLADCS +EL+IVEGDSAGGSAKQ R Sbjct: 351 MAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGR 410 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 +R QA+LPLRGKILNV A +KI +N ++ ++ ALG + E RY KV+IMT Sbjct: 411 DRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMT 470 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDGAHI +LLLTFFY+ M +IE ++++ PPL+++ QG + YA++++ +++L+ Sbjct: 471 DADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLK 530 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 + K + R+KGLGEM A+QL ET MD + RTLL+V + + D ++ L Sbjct: 531 TLPQTPKPG--LQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAM----DADETFEML 584 Query: 663 MGTK 666 MG K Sbjct: 585 MGDK 588 >gi|153813002|ref|ZP_01965670.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174] gi|149830949|gb|EDM86039.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174] Length = 660 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 246/660 (37%), Positives = 345/660 (52%), Gaps = 34/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I Sbjct: 21 AKKETYDAGSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCSQIH 80 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV DNGRGIPV+ H K S ++ TTLHAGGKFDNS Y+ SGGLHGVG Sbjct: 81 VVLEKDGSCTVTDNGRGIPVDMHEK--GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVG 138 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS L + V+R + + RGIP LE K + + GT I F PDP Sbjct: 139 SSVVNALSTYLDIKVSRDGYVHHDHYERGIPTIELENGLLPKLGRTKE-TGTCINFLPDP 197 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F A + AYL+ + + + P KEE++ P G+ Y+ Sbjct: 198 EIFEK-TRFSATDVKSRLHETAYLNPELTIIFEDLR-----GTEPVKEEYHEPEGIVGYI 251 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + + K E G VE A + E + +CN I EGGTH + Sbjct: 252 RDMNHSTEALHEP-VYLKGEADGIQ---VEVAFQYTNEFRENVLGFCNNIYNAEGGTHLT 307 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + YA + + D+ ++S+ P F GQTKTKL + Sbjct: 308 GFKTTFTTVMNTYAREIGILKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 367 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + L + Y +N +L + ++ R + + Sbjct: 368 DAAKATGKVLGEQLVLYFDRNLETLKMILSCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 427 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C + E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N Sbjct: 428 GKLANCEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLAN 487 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K++IM DADVDGAHI++LLLT FY+ M +L Sbjct: 488 AEIKTMINAFGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPEL 547 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + Y +D++ +K K H G + R+KGLGEM A Sbjct: 548 IYEGHVYIAMPPLYKAMPKKGPEEYLYDDKALEKYR---KTHKPGSFTLQRYKGLGEMDA 604 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R + RVEI + T+ LMG++ R FI E A+ + + Sbjct: 605 EQLWETTLNPETRRMKRVEIEDARLASSVTE----VLMGSEVPPRKAFIYEHAADAE-LD 659 >gi|160938079|ref|ZP_02085436.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC BAA-613] gi|158439073|gb|EDP16828.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC BAA-613] Length = 639 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 349/659 (52%), Gaps = 33/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + Y+A SI +LEGLE VR RPGMYIGG K L+HL E+IDNA+DE +AG+ + + V Sbjct: 2 AKEQYNADSITVLEGLEAVRKRPGMYIGGVGSKGLNHLIYEIIDNAVDEHLAGFCSSVWV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV DNGRGIPV H K S I+L+TLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVRDNGRGIPVGLHKK--GISAARIVLSTLHAGGKFDNDAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPK 214 SVVNALS + + V R I+ ++ +G P+ LE K R GT I F PD Sbjct: 120 SVVNALSAHMDLKVYRDGCIYHDEYEKGRPVIKLENGLLPVIGKTRE-TGTCINFLPDGD 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A L AYL+ + + + G EK F+ P G+ Y++ Sbjct: 179 IFEK-TRFKAEWLKSRLHETAYLNPNLTLYYENKR-----PGEGEKVAFHEPEGIVAYVR 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 ++ + I+ T K +++ + E I +CN I T EGGTH +G Sbjct: 233 ELNSGKTPVHDPIYFKGTVDKVEVEAAIQFVDTFEE---NILGFCNNIFTQEGGTHLAGF 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + T I YA + + D +++V +P F GQTKTKL S DA Sbjct: 290 KTKFTALINSYAREIGILKDKDTNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V D Y +N ++ + ++ R K + + GK Sbjct: 350 TKAVFTVTGDELQLYFDRNVEVLKGVIGCAEKSAKIRRAEEKAKTNMLTKSKFSFDSNGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N + Sbjct: 410 LANCESRDASRCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAE 469 Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ GC + + LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 470 IKTMINTFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIY 529 Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 H+++ PPLF++ + + Y +DE+ LE ++K G + R+KGLGEM A Q Sbjct: 530 DGHVYIAMPPLFKVIPKRGEEQYLYDEKE----LERYRKTHTGDFTLQRYKGLGEMDAEQ 585 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L ET +D +R L RVEI + + T+ LMGT+ R +FI E A + + Sbjct: 586 LWETTLDPERRVLKRVEIEDARMATEITE----MLMGTEVGPRRQFIYEHADEAE-IDA 639 >gi|229816230|ref|ZP_04446540.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM 13280] gi|229808238|gb|EEP44030.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM 13280] Length = 674 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 254/686 (37%), Positives = 368/686 (53%), Gaps = 51/686 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y S I++LEGLE VR+RPGMYIG T LHHL E++DN++DE +AG+ + IE Sbjct: 2 ANENEYGGSEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCSSIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TVVDNGRGIPV+ HP TLE+++T LHAGGKFDNS Y++SGGLHGVG Sbjct: 62 VTVHPDNSITVVDNGRGIPVDMHP-VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +++V V R ++ +FSRG + + T +TF PD +IF Sbjct: 121 VSVVNALSKKMNVKVRRDGKVYEMEFSRGKTTQKMREIGTSSTTG-TTVTFWPDDEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L Q A+L+ +K ++ P+ EEF + GG+ +++ E Sbjct: 180 TV-YDFDILHDRLQQTAFLNKNLKIVLRDERS-----VEPQVEEFCYAGGIIDFVKFLNE 233 Query: 279 NRSLIS---SEIFTGKTEKKG---THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 +++ I+ + G G VE AI W + S+ N I T EGG H Sbjct: 234 GKTVPDGLKDPIYLAGASEDGAPVEKTGEVEVAIQWNTSYSESVVSFANDIRTIEGGMHM 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT I +YA ++ ++ DD+ ++SV + +P+F GQTK KL S Sbjct: 294 EGFRGALTSVINEYARKNGIIKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGS 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + + + YL ++P +A ++++ + S+ R RK RE R+ + + Sbjct: 354 SFMRTLTRKIVSEGLAEYLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ A TELFIVEGDSAGGSAK R R QA+LPLRGKILNV G + Sbjct: 414 LPGKLADCSERNAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473 Query: 509 NNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ I L+ A+GC + + RY K+IIMTDADVDGAHI LLLTFFY+ Sbjct: 474 SSETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKY 533 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAH----------------------DEEHKQKI 600 M LI+ ++++ PP+F I K Y + DE ++ Sbjct: 534 MRPLIDAGYVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIAALGLNPDESEDEQS 593 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 + K + + R+KGLGEM QL T MD R L RV I + ++ Sbjct: 594 NGKVTKK-RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIV----ADRAVR 648 Query: 661 KLMGTKADERFKFIQERASFIDDVGT 686 +LMG++ R ++I++ A + Sbjct: 649 ELMGSEVGYRREYIEKHAHDARFLDA 674 >gi|291459211|ref|ZP_06598601.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418465|gb|EFE92184.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 642 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 251/661 (37%), Positives = 353/661 (53%), Gaps = 35/661 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AGY I V+ Sbjct: 2 AEKYNADSITVLEGLEAVRRRPGMYIGSVGTKGLNHLIYEILDNSVDEHLAGYCTKIWVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 LD +G TV DNGRGIPV H K S +++TTLHAGGKF+ S+Y+ISGGLHGVG S Sbjct: 62 LDSDGSCTVRDNGRGIPVGIHKK--GVSAERVVMTTLHAGGKFNASSYKISGGLHGVGSS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLS-----PLEKKEKVRNKRGTRITFRPDPKI 215 VVNALS + + V + I+ ++SRGIP K R +GT I F PDP+I Sbjct: 120 VVNALSSYMRIRVFQDGKIYEDEYSRGIPTKELSDGMPPVIGKTRE-KGTEIRFIPDPEI 178 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F A L+ AYL+ + + + E +++ P GL+ +++ Sbjct: 179 FEKT-QFRAEWLMSRLHETAYLNPELSIHYCDRRGEEEILA-----DYHEPEGLRAFVRD 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 + S + + T +E I + + E +CN I T EGGTH G Sbjct: 233 LDRDCGEAVSPEIYFRGRAENT---ELECCIQFTDSFEENILGFCNDIYTQEGGTHIVGF 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + T+ I YA ++ + D ++++ EP F GQTKTKL SLDA Sbjct: 290 KTKFTQLINGYARELGLLKEKDPNFTGADTRNGMTAVIALKYPEPIFEGQTKTKLASLDA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V + HY +N ++ + + R + K + + GK Sbjct: 350 AKHVAAIAGEELSHYFDRNIEVVKAIIGCAEKSARIRRQEEKAKTNLLSKSKYSFDSNGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+FIVEGDSAGGSAK +R+R+ QA+LPLRGKILNV A +K+ N + Sbjct: 410 LANCISREPENCEIFIVEGDSAGGSAKSSRDRNTQAILPLRGKILNVEKASIDKVLANAE 469 Query: 513 IMDLVQALGCR----TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ A GC + + LRY K+I+MTDADVDG+HI +LLLTFFY+ M DLI Sbjct: 470 IKTMINAFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPDLIR 529 Query: 569 QKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + H+++ PPL+ T + K+ Y +D++ + E KH +G EI RFKGLGEM Sbjct: 530 EGHVYVSMPPLYLATPSAKKEKAEYLYDDKALLRYRE---KHREGSYEIKRFKGLGEMDP 586 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 S+L ET ++ R L RVEI + + T LMGT+ R +FI E A + Sbjct: 587 SELWETTLNPENRVLKRVEIEDARLASEVTG----MLMGTEVGPRREFIYEHAREAT-ID 641 Query: 686 T 686 Sbjct: 642 A 642 >gi|296111945|ref|YP_003622327.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154] gi|295833477|gb|ADG41358.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154] Length = 685 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 246/658 (37%), Positives = 361/658 (54%), Gaps = 33/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + G+ N I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGNDIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+PV H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HSNNSITVQDFGRGMPVGLHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R + + F+ G P+ L + K GT +TF+PDP IF Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFTNGGQPVGTLRDLGVTKEKSGTTVTFKPDPTIFSAVV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + A+L VK + ++ E +++ GL+ ++ E++ Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFSLTDER-----VKPARVETYHYEKGLEAFVGFLNEDK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I T + E+ G V+ A + + E S+ N + T +GGTHE G R A T Sbjct: 237 GTIGPV-MTFEGEQSGI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA ++ ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452 V++ + + +L++N L+ I E R RK R+ +R + + L GK Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKAKGQKERLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKNAERNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + ++ D + K+IIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGNDFKVADTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532 Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ +K +A + LE + + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYASKKFDDKFAWTNDE----LETITSQNEARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 ET M+ RTL+RV+I+ + + + LMG K + R ++I+ F +D+ G+ Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGS 642 >gi|51473426|ref|YP_067183.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington] gi|81390212|sp|Q68XE1|PARE_RICTY RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|51459738|gb|AAU03701.1| DNA topoisomerase IV subunit B [Rickettsia typhi str. Wilmington] Length = 663 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 331/649 (51%), Positives = 442/649 (68%), Gaps = 7/649 (1%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ N+ NY A I +L+GLEPVR RPGMYIGGTD A+HHL SEV+DNAMDE + Sbjct: 8 NNKEKKNKIIYTNYSAKDIEVLDGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAV 67 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A++I + + + +T+ DNGRGIP++NHPKFPNKS LE+ILTTLH+G KF N+ Y Sbjct: 68 AGFASIIMIKMHQDHSITIFDNGRGIPIDNHPKFPNKSALEVILTTLHSGSKFSNNVYHT 127 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 +GGLHGVGISVVNALS L + V +Q ++SQ +S+G L+ L E + RGT I F Sbjct: 128 AGGLHGVGISVVNALSKHLKIEVYQQGKLYSQSYSKGEKLTDLISTEVSKRLRGTSINFT 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP+IF + F+ ++ ++ +SKAYL V W C+ E+ IP+K FP GLK Sbjct: 188 PDPEIFSETLHFNPKKIYEIARSKAYLYRGVSIEWECEVEVP--SDIPKKALINFPNGLK 245 Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 YL +K+ +L+ EIF+G E + + + + SYCNT+ T +GGT Sbjct: 246 DYLSSKISLDNLVIPEIFSGNIESTMDAIKLEWAICWQNNDTSAFMKSYCNTVPTPQGGT 305 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE GL+ A+ RG+K Y+E+ NK++ ++ +D+ +A +LSVFI EP F GQTK KLVS Sbjct: 306 HEQGLKSAILRGLKAYSEMIGNKKSANLTIEDIFETASVVLSVFIVEPSFQGQTKEKLVS 365 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VEN ++D FDH+L + + AT LLE VI SE R ++ +R ++RK A +KLRL Sbjct: 366 NGVSKLVENIIKDHFDHFLSSDKVLATHLLEHVIAISEFRRNKKNERNISRKNATQKLRL 425 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ A GTELFIVEGDSAGGSAKQARNR QAVLPL GK+LNVAS+ EKI N Sbjct: 426 PGKLADCTRTSAEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIIN 485 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ I DL AL C + Y++E+LRYEK+IIMTDADVDGAHIASLL+TFF+ M L+++ Sbjct: 486 NQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPQLVKE 545 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 HL+L PPL+R+TQ K YA DEE K K+ + K K KIE+ RFKGLGEM+ +QLK Sbjct: 546 GHLYLAKPPLYRLTQSNKIYYACDEEEKIKLTYKLSKTSKAKIEVGRFKGLGEMMPAQLK 605 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 ET M KR+LL+V + +++ ++ LMG K ++RF+FI E+A Sbjct: 606 ETTMHPEKRSLLKVTLED----VQNVDKIVDDLMGKKPEKRFQFIYEQA 650 >gi|311742169|ref|ZP_07715979.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] gi|311314662|gb|EFQ84569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] Length = 666 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 246/671 (36%), Positives = 358/671 (53%), Gaps = 23/671 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 S YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL EV+DN++DE + Sbjct: 2 TSTPDPAAPIESTYDASNIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A+ IEV+L +G + VVD+GRGIPV+ HP + ++LT+LHAGGKF Y++ Sbjct: 62 AGHASHIEVTLLADGGVKVVDDGRGIPVDEHP-IEKIPAVTLVLTSLHAGGKFGGGGYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS L V V R ++Q F+ G+P PLE+ E T Sbjct: 121 SGGLHGVGVSVVNALSTRLFVEVRRDGHRWTQSFTYGVPDQPLEQHEATTETG--TTTTF 178 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-----YGIPEKEEFYF 265 + + + L + A+L+ ++ ++E AE + + F + Sbjct: 179 YASEDIFETTEYSYETLKTRFREMAFLNKGLELVLIDEREHAEDADDTADEVERQVRFRY 238 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL Y+Q T ++E A+ W + ++ NTI T Sbjct: 239 DGGLVDYVQHINTGAKAAIHRDIISIERDDDTGGMSLELAMQWNASFSESVHTFANTINT 298 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 EGGTHE G R ALT + ++AE K+ + DD+ I+SV + EP+F GQ Sbjct: 299 HEGGTHEEGFRAALTTTVNRFAEANNLIKKKEDRLTGDDIREGLTAIISVKLAEPQFEGQ 358 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A+ V+ L + +L NP E ++ I+ + R+ RK R++ R Sbjct: 359 TKTKLGNTEAKGFVQQVLNEQLGAWLEANPAEGKTIVRKSIDAASARMAARKARDLARNR 418 Query: 443 A--IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + LPGKLADCS E+FIVEG+SAGGSAK R+ QA+LPLRGKILNV Sbjct: 419 KGFLGSGGLPGKLADCSSRNPEECEVFIVEGNSAGGSAKGGRDPRTQAILPLRGKILNVE 478 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +KI N ++ ++ ALG + LRY K+++M DADVDG HI++LLLT + Sbjct: 479 KARIDKILQNAEVQAIISALGTGVHEDFDIAKLRYHKIVLMADADVDGQHISTLLLTLLF 538 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE-----I 614 + M LI+ H++L PPL++I + A+ + + +L + GK + I Sbjct: 539 RFMKPLIDAGHVYLAQPPLYKIKWSNATADLAYTDRERDALLAAGAESGKRLPKEAGQAI 598 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM S+L +T MD + R L +V ++ + LMG ++R FI Sbjct: 599 QRYKGLGEMNDSELWDTTMDPDARVLRQVTLDD----AAMADEIFTILMGEDVEQRRSFI 654 Query: 675 QERASFIDDVG 685 Q A + + Sbjct: 655 QRNAKDVRFLD 665 >gi|302386253|ref|YP_003822075.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum WM1] gi|302196881|gb|ADL04452.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum WM1] Length = 639 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 246/659 (37%), Positives = 347/659 (52%), Gaps = 33/659 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A Y+A SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I V Sbjct: 2 AKTQYNADSITVLEGLEAVRKRPGMYIGSVGTKGLNHLIYEIVDNAVDEHLAGYCDQIWV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G TV D GRGIPVE H K S ++L+TLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 TLEADGSCTVKDAGRGIPVEMHSK--GVSAERVVLSTLHAGGKFDNDAYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL-----SPLEKKEKVRNKRGTRITFRPDPK 214 SVVNALS + + V + I ++ RGIP L K + GT I F PD + Sbjct: 120 SVVNALSAHMKIKVYKNGLIHYDEYERGIPTVELVDGLLPTLGKTKE-TGTEINFLPDGE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A L AYL+ +K + ++ E E ++ P G+ Y++ Sbjct: 179 IFEK-TRFKADWLKSRLHETAYLNPSLKIIYRNKRQGEE-----ETVVYHEPDGIIAYVR 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 + + ++ T K +++ + E I +CN I T EGGTH +G Sbjct: 233 ELNAGKEAVHDPVYFKGTMDKVEIEVALQFVDTFEE---NILGFCNNIFTQEGGTHLAGF 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + T+ I YA ++ + D +++V +P F GQTKTKL S DA Sbjct: 290 KTRFTQMINSYARELGILKEKDANFTGADTRNGLTAVVAVKHPDPIFEGQTKTKLASADA 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V D Y +N ++ + ++ R K + + GK Sbjct: 350 TKAVFTVTGDELQRYFDRNLEVLKAVIGCAEKSAKIRKAEEKAKTNMLSKSRFSFDSNGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C A E+FIVEGDSAGGSAK ARNR QA+LP+RGKILNV A +K+ N + Sbjct: 410 LANCESREAEKCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAE 469 Query: 513 IMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 I ++ GC + + LRY K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 470 IKTMINTFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIY 529 Query: 569 QKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 H+F+ PPLF++ + + Y +DE+ LE +++ G+ + R+KGLGEM A Q Sbjct: 530 NGHVFIAMPPLFKVIPKRGEEQYLYDEKE----LERYRRTHTGEFTLQRYKGLGEMDAEQ 585 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L ET +D +R L +VEI + + T+ LMG+ R +FI E A + + Sbjct: 586 LWETTLDPERRVLKQVEIEDARMASEITE----MLMGSDVLPRRQFIYEHADEAE-IDA 639 >gi|166030882|ref|ZP_02233711.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC 27755] gi|166029149|gb|EDR47906.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC 27755] Length = 640 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 243/660 (36%), Positives = 348/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG+ I Sbjct: 2 AKNNTYDADSITVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCTEIH 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G T+ DNGRG+PV H K S I+ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEKDGSATISDNGRGVPVGMHAK--GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V V+R I ++ RGIP+ LE K R GT++ F PD Sbjct: 120 SSVVNALSAYMDVQVSRDGYIHHDRYERGIPVVELEDGLLPTLGKTRK-TGTKVNFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + YL+ + + ++ PE ++ P G+ ++ Sbjct: 179 TIFEK-TKFKAEEVKSRMHETTYLNPNLTIIFEDLRD-----TEPEHIVYHEPDGILGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + K E G VE A + E + I +CN I EGGTH + Sbjct: 233 RELNAKKESVHEP-VYFKGEADGI---EVEVAFQYVNEFHENILGFCNNIYNSEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T I +YA + + D+ I+S+ +P F GQTKTKL + Sbjct: 289 GFKTTFTTVINQYARELGILKDKDPNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + + + + +N ++ + ++ R K + Sbjct: 349 DASKATGKVVGEEIVRFFDRNLETLKNVIGCAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK AR+R QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I++ H+++ PPL++ + + Y +D+ K LE+++K G + R+KGLGEM A Sbjct: 529 IQEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKTHDGPFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L VEI + T+ LMGT+ R FI E A+ + + Sbjct: 585 DQLWETTLNPKTRLLKLVEIEDGRMASSVTE----MLMGTEVPPRRAFIYENATEAE-LD 639 >gi|167463189|ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381894|ref|ZP_08055848.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154282|gb|EFX46604.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 657 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 234/665 (35%), Positives = 355/665 (53%), Gaps = 42/665 (6%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + S +YDA +I++LEGL VR RPGMYIG T LHHL E++DNA+DE +A + + Sbjct: 10 NQTTLSSDYDADAIQVLEGLTAVRKRPGMYIGSTSSSGLHHLVWEIVDNAVDEHLAKHCS 69 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V++ G +TV DNGRGIP H T +++ T LHAGGKF Y+ SGGLH Sbjct: 70 KIDVTIHKEGSITVYDNGRGIPTGMHKM--GIPTPQVVFTILHAGGKFGGGGYKKSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKRGT 205 GVG SV NALS+ L V + R I+ Q+F G P++ LE K GT Sbjct: 128 GVGASVTNALSEWLEVEIFRDGQIYKQRFEYWVDEAGKEHVGEPVTSLEIIGKTSK-SGT 186 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +ITF+PD ++F F+ L + Q A+L+ ++ ++ +E + F + Sbjct: 187 KITFKPDVRVFKGGIQFNYDTLAERLQELAFLNSGLEIFLKDERTGSE-------DHFLY 239 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILT 324 GG +++ E + ++ ++ + EK VE A+ + E S+ N+I T Sbjct: 240 SGGASEFVRFLNEGKDVLH-DVIHFEAEKDDI---EVEIAMQYNIGYTETLVSFVNSIPT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 GGTHE+G + A TR + +YA ++ ++ DL + ++++ + + EF GQ Sbjct: 296 RGGGTHETGFKTAFTRVMNEYARKNSILKEKDKNLEGTDLREGLMAVINIKMSDVEFVGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK +L S A+ V+ + + +L +NP A +L+ ++ ++ R RK RE R Sbjct: 356 TKDQLGSATARSAVDAVVSEKMAVFLEENPQVAQMMLKKAVQSAKAREAARKAREEVRSG 415 Query: 443 AI---RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 L GKL ELFIVEGDSAGGSAKQ R+ QA+LPL+GK +N Sbjct: 416 KKGRSESSNLNGKLTPAQSKDVTRNELFIVEGDSAGGSAKQGRDSKYQAILPLKGKPMNP 475 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A I N + ++ A+G S++ + Y K+IIMTDAD DGAHI LLLTFF Sbjct: 476 EKAKLLDILKNDEYKAIISAIGAGVGSEFELSETNYNKIIIMTDADTDGAHIQVLLLTFF 535 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQ--GTKS--VYAHDEEHKQKILEEFKKHGKGKIEIS 615 Y+ M L++ +++ PPL++I++ G ++ YA +E K+ ++ K+ E+ Sbjct: 536 YRYMKPLVDAGKVYIAQPPLYKISKKSGKRTSVHYAWTDEELSKLTQKAGKN----FELQ 591 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET M+ R LL+V+I + ++ LMG K D R ++I Sbjct: 592 RYKGLGEMNPEQLWETTMNPGTRILLQVQIED----AAKAERRVSTLMGDKVDPRKRWII 647 Query: 676 ERASF 680 + F Sbjct: 648 DNVDF 652 >gi|283782558|ref|YP_003373312.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05] gi|297243224|ref|ZP_06927159.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis AMD] gi|298253027|ref|ZP_06976819.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis 5-1] gi|283442041|gb|ADB14507.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05] gi|296888758|gb|EFH27495.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis AMD] gi|297532422|gb|EFH71308.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis 5-1] Length = 691 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 246/698 (35%), Positives = 370/698 (53%), Gaps = 30/698 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE 71 + S + + ++ D+ + A ++YDAS +R+LEGLE VR+RPGMYIG T Sbjct: 1 MANTEDNSMDNAVEEHKLDDAQ-LDDSLAPEHYDASDLRVLEGLEAVRIRPGMYIGSTGP 59 Query: 72 KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLE 131 + LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ P S +E Sbjct: 60 RGLHHLVYEIVDNSVDEALAGYASHIEVTILPDNAIRVVDDGRGIPVDEVP-GEGVSGVE 118 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS 191 ++T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P + Sbjct: 119 TVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTA 178 Query: 192 PLEKKEKV--RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 PL K E + GT +TF PD IF +D L Q A+L+ +K + + Sbjct: 179 PLAKGEPMAEGESTGTSVTFWPDGTIFETTV-YDFETLRSRFQQMAFLNKGLKISLTDLR 237 Query: 250 EIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKG 296 + E + + G+K Y+ +++R + E E + Sbjct: 238 KPDEAGDEVAGDSESSSEEKHRSVSYQYEHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDL 297 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA ++ Sbjct: 298 EIGISAEIAMQWTVAYSEAVHTFANTISTTEGGTHEEGFRAALTTLVNRYAREKNILKEK 357 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + + + +P Sbjct: 358 DTNLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPN 417 Query: 414 EATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA +++ IE S RL +K RE R+ +I +P KL DC + ELFIVEGD Sbjct: 418 EAKNIIQKAIEASRARLAAKKARENTRRKSIFETAGMPDKLKDCQSSNPEECELFIVEGD 477 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSA Q R+ QA+LPLRGKILN A +++ ++ I L+ A+G + Sbjct: 478 SAGGSAIQGRDPITQAILPLRGKILNTERASIDRMMKSETIESLITAVGGGYGEDFDLSK 537 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 +RY KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + + Sbjct: 538 VRYHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYVYVAMPPLYRLKWSKGAHDFV 597 Query: 592 HDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + + ++L E K G+ I R+KGLGEM +L ET MD R L ++ I Sbjct: 598 YTDAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIED- 656 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + Sbjct: 657 ---AARADETFSMLMGDEVEPRRLFIQRNAHDARFIDA 691 >gi|260589534|ref|ZP_05855447.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] gi|260540102|gb|EEX20671.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] Length = 640 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 247/661 (37%), Positives = 348/661 (52%), Gaps = 37/661 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDASSI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY I Sbjct: 2 AKKNTYDASSITVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCKNIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G T+ D+GRGIPV H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEKDGSATIEDDGRGIPVGMHEK--GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS L + V+ I + RGIP PLE K + + GT I F PD Sbjct: 120 SSVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + + AYL+ + + ++ PE+ F+ P G+ ++ Sbjct: 179 EIFEK-TRFSSTEVKSRLHETAYLNPELTILFQDNR-----GTEPEEIVFHEPDGIVGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + I K E G TVE A + E + +CN I EGGTH + Sbjct: 233 KDLNKKSECIHEP-VYFKGESDGI---TVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + YA ++ + D+ ++S+ P F GQTKTKL + Sbjct: 289 GFKTTFTSVMNTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + + Y +N +L + ++ R K + Sbjct: 349 DASKATGKVTGEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL++C + E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLSNCEKRDPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 I + H+++ PPL++ T+G + Y +D+ K LE++++ KG + R+KGLGEM Sbjct: 529 IYEGHVYIAMPPLYKAMPTKGKEE-YLYDD----KALEKYRRTHKGSFTLQRYKGLGEMD 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET ++ R L VEI + + T+ LMGT+ R FI E A + Sbjct: 584 AQQLWETTLNPETRMLRLVEIEDARMASEVTE----ILMGTEVPPRKAFIYEHARDA-QL 638 Query: 685 G 685 Sbjct: 639 D 639 >gi|170017459|ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20] gi|169804316|gb|ACA82934.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20] Length = 687 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 245/664 (36%), Positives = 357/664 (53%), Gaps = 40/664 (6%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY N I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+PV H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HDNNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R + + F G P+ L + K GT +TF+PDP IF Sbjct: 123 VNALSESLQVTIIRDGHQWQEDFIDGGQPVGTLRDLGATKAKSGTTVTFKPDPSIFSATV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + A+L VK + ++ E +++ GL++++ E++ Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFILTDER-----VSPARVETYHYEKGLESFVNFLNEDK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I T + +++G V+ A + + E S+ N + T +GGTHE G R A T Sbjct: 237 ETIGPV-MTFEGQQEG---LVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA ++ ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGSDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V+ + + +L++N ++ I E R RK R+ +R + + GK Sbjct: 353 VDAVVNETLGRFLMENGDFGQNIIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKNAARNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G ++ ED + K+IIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGPDFKVEDTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532 Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ +K +A + LE + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYASKKFEDQFAWTNDE----LESITSQNDARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--------I 681 ET M+ RTL+RV+I+ + + + LMG K + R +I+ F + Sbjct: 589 ETTMNPETRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRRDWIEANVHFTMDEAGSIL 644 Query: 682 DDVG 685 D+V Sbjct: 645 DNVD 648 >gi|154506273|ref|ZP_02043011.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149] gi|153793412|gb|EDN75832.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149] Length = 650 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 244/663 (36%), Positives = 353/663 (53%), Gaps = 35/663 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 N S+ YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG+ Sbjct: 9 ENMGKSNTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCK 68 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+L+ +G TV D+GRG+PV H K S ++ TTLHAGGKFD+S Y+ SGGLH Sbjct: 69 NIHVTLEKDGSATVEDDGRGVPVGMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFR 210 GVG SVVNALS + V ++R+ I ++ RG+P+ LE K R GT++ F Sbjct: 127 GVGSSVVNALSVYMDVQISREGYIHHDRYERGVPVVELEDGLLPTIGKTRK-TGTKVNFL 185 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD IF F A + AYL+ + + + E E++ P G+ Sbjct: 186 PDDTIFEK-TKFRAEEVKSRLHETAYLNPELTIVFDDKR-----PDSQEHIEYHEPDGIL 239 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGT 329 +++ + + ++ K +G VE A + E + + +CN I EGGT Sbjct: 240 GFIRDLNQKKEVLHDP-IYFKGTAEGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGT 295 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G + T + +YA ++ + D+ I+S+ +P F GQTKTKL Sbjct: 296 HLTGFKTTFTTVMNQYARELGILKEKDSNFTGADIRNGMTAIISIKHPDPRFEGQTKTKL 355 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 + DA + D Y +N K+L + ++ R K + Sbjct: 356 DNPDAAKATGKVTGDEIVLYFDRNVETLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSF 415 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 GKLA+C A E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ Sbjct: 416 DSNGKLANCESRDAKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKV 475 Query: 508 RNNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 N +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M Sbjct: 476 LANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFM 535 Query: 564 YDLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 +LI + H+++ PPL+++ + + Y +D+ K LE++++ G + R+KGLGE Sbjct: 536 PELIYEGHVYIAMPPLYKVMPKKGEEEYLYDD----KALEKYRRTHDGGFTLQRYKGLGE 591 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M A QL ET ++ R L VEI + T+ LMGT+ R FI E A+ + Sbjct: 592 MDADQLWETTLNPETRILKLVEIEDARMASGVTE----MLMGTEVPPRRAFIYENATEAE 647 Query: 683 DVG 685 + Sbjct: 648 -LD 649 >gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii] gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii] Length = 723 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 249/671 (37%), Positives = 378/671 (56%), Gaps = 31/671 (4%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + + +PA + S YDA I++LEGLEPVR RPGMYIG T + LHHL EV+DNA Sbjct: 72 ATAVTQAPAPSPTS----YDAGKIQVLEGLEPVRRRPGMYIGSTGPRGLHHLIYEVLDNA 127 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DEV AG+A ++V L +G +++ DNGRGIP + HP KSTLE +LT LHAGGKF Sbjct: 128 IDEVQAGFATQVDVVLHSDGSVSITDNGRGIPTDVHP-ATGKSTLETVLTVLHAGGKFGG 186 Query: 146 ST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVR 200 Y +SGGLHGVG+SVVNALS L TV R + Q F RG + L + + Sbjct: 187 DESGYTVSGGLHGVGVSVVNALSKRLEATVWRNGQEYRQVFQRGKAVGSLTTRSLPRESS 246 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 ++ GT + F PD ++F FD + + A+L+ V + + Sbjct: 247 SRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVAFLNPEVTINLKEESATTD------- 299 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 E F+F GGL Y++ ++++ I I + + +++W + + Y N Sbjct: 300 EVFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISVNVSMQWCS--DAYSDTLLGYAN 357 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 +I T +GGTH GL++ LTR + ++ ++ ++ + ++SV + EPE Sbjct: 358 SIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDNLSGEHAREGLTCVISVKVPEPE 417 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F GQTKT+L +++ ++ VE A+ + YL P +L ++ + +K RE Sbjct: 418 FEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLEAILSKALQAYKAAEAAKKAREL 477 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 V RK ++ LPGKLADC+ + +E+FIVEG+SAGGSAKQ R+R+ QA+LPL+GKIL Sbjct: 478 VRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAGGSAKQGRDRAFQAILPLKGKIL 537 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLL 556 N+ I NQ+I DL+ ALG TR + +D LRY K+II+TDADVDGAHI +LLL Sbjct: 538 NIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLRYHKIIILTDADVDGAHIRTLLL 597 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ L + ++++ PPL+++ +G + Y + E Q +L F + I R Sbjct: 598 TFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSENELQGLLGTFAANAP--YNIQR 655 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM+ QL +T +D +KR L ++ + + + + ++LMG K + R + I + Sbjct: 656 FKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAV----EASFTFSRLMGDKVEPRKELILK 711 Query: 677 RASFID--DVG 685 A+ ++ Sbjct: 712 SAAQFKQQNLD 722 >gi|72080449|ref|YP_287507.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448] gi|71913573|gb|AAZ53484.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448] Length = 639 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 246/649 (37%), Positives = 366/649 (56%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y A +I +LEGLE VR RPGMYIGGT LHHL E++DNA+DE +AG+A+ I+V+ Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ D+GRGIP HPK+ S E++ T LHAGGKFD +Y++SGGLHGVG S Sbjct: 62 ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218 VVNALS EL V + R ++ QKF G + ++ GT+I F PD +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + ++ AYL+ ++ + + F F GG+ Y+ + Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRGIEFELIDKRS-------DFSQTFCFEGGISDYVDELSK 232 Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336 N + L ++ I++ + VE+A+ + E++ +I SY N I EGG+HE+GL Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L R + YA + + D+ + I+S+ P F GQTK KL + + ++ Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V A + F YL +NP +A K++ ++ + R + + + RK+A LPGKL Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC+ + EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ N++I Sbjct: 413 ADCATKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + ++ A G ++ +RY+K+IIMTDAD DG+HI SLLLTF ++ LIE ++ Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I+QG K YA++E+ K+K L E K K I R+KGLGEM QL ET M Sbjct: 533 IAIPPLYKISQGKKIFYAYNEKEKEKFLAEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D R + +V+I + L+ + LMGT R FI+E A + Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636 >gi|256850406|ref|ZP_05555834.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US] gi|256712803|gb|EEU27796.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US] Length = 648 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 243/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VIIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K + GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K++++ Sbjct: 180 T-TKYKYETIQERIREYAFLLKGVKFFLTDEREPE------HHDVFQYDDGIKSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSQNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L + +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|197303041|ref|ZP_03168089.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC 29176] gi|197297896|gb|EDY32448.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC 29176] Length = 640 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 242/656 (36%), Positives = 353/656 (53%), Gaps = 35/656 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YDA SI +LEGLE VR+RPGMYIG K L+HL E++DNA+DE +AG+ I V+L+ Sbjct: 6 TYDAGSIAVLEGLEAVRVRPGMYIGSVSTKGLNHLVYEIVDNAVDEHLAGFCTEIHVTLE 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV DNGRG+PV+ H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG SVV Sbjct: 66 KDGSATVSDNGRGVPVDMHQK--GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIFG 217 NALS + V ++R I ++ RGIP+ LE K K R GT + F PD IF Sbjct: 124 NALSAYMDVKISRDGYIHHDRYERGIPVIELEDGLLPKIGKTRK-TGTTVNFLPDDTIFE 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F A + AYL+ ++ + ++ +E+ ++ P G+ ++ Sbjct: 183 K-TRFKAEEIKSRLHETAYLNPKLTIFFEDKRQGSEEKIE-----YHEPEGIIGFITDMN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336 + ++ K E G VE A+ + E + + +CN I EGGTH +G + Sbjct: 237 HKKEVLHEP-IYFKGEADGI---GVEVALQYVNEFHENVVGFCNNIYNAEGGTHLTGFKT 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 T + +YA ++ + D+ I+S+ +P F GQTKTKL + DA + Sbjct: 293 TFTTVMNQYARELGVLKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAK 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V + + +N +L + ++ R + + GKLA Sbjct: 353 AVGKVTGEEIVRFFDRNIETLKTVLSSAEKAAKIRKTEERAKTNLLTKQKYSFDSNGKLA 412 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 +C E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A +K+ N +I Sbjct: 413 NCESRDPKKCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472 Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + Sbjct: 473 TMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEG 532 Query: 571 HLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL++ + + Y +D+ K LE+++K+ G + R+KGLGEM A QL Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDD----KALEKYRKNHTGPFTLQRYKGLGEMDAEQLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET +D +R L VEI + T+ LMGT+ R FI E A+ + + Sbjct: 589 ETTLDPERRLLKLVEIEDARMASSVTE----MLMGTEVPPRKAFIYENATEAE-LD 639 >gi|227878639|ref|ZP_03996556.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01] gi|256843237|ref|ZP_05548725.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN] gi|262046445|ref|ZP_06019407.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US] gi|293380597|ref|ZP_06626652.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1] gi|312977468|ref|ZP_07789216.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05] gi|227861759|gb|EEJ69361.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01] gi|256614657|gb|EEU19858.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN] gi|260573316|gb|EEX29874.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US] gi|290922844|gb|EFD99791.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1] gi|310895899|gb|EFQ44965.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05] Length = 648 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 243/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I+ Sbjct: 2 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 VIIHSDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS + V V R + ++F G P+ L+ K + GT ITF+PD IF Sbjct: 120 SSVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + ++E + F + G+K++++ Sbjct: 180 T-TKYKYETIQERIREYAFLLKGVKFFLTDEREPE------HHDVFQYDDGIKSFVKYLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHESG R Sbjct: 233 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARS 288 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 289 GFTRAFNDYAKKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V++ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 349 RSAVDSLVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 409 GKLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G +++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHG 528 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + YA +E L + +K + RFKGLGEM A Sbjct: 529 KVYIALPPLYRLQKGRGKKTQVQYAWTDEE----LADDEKKMGRGYSLQRFKGLGEMNAE 584 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL T MD R L+RV+I+ + + LMG K R K+I+E F Sbjct: 585 QLWATTMDPQSRMLIRVKIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 634 >gi|163838775|ref|YP_001623180.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209] gi|162952251|gb|ABY21766.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209] Length = 702 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 246/710 (34%), Positives = 375/710 (52%), Gaps = 34/710 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+ + + +++ + +P S +S +YDAS I +LEGLE VR Sbjct: 1 MSTSNPENPQNPDASVDEAAQPSPSAKAVPTSHVSPEES---HYDASDITVLEGLEAVRK 57 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL +EV+DN++DE +AGY IE++L +G + V D+GRGIPV+ Sbjct: 58 RPGMYIGSTGPRGLHHLITEVVDNSVDEALAGYCTHIEITLQADGGVRVDDDGRGIPVDM 117 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP K T+E+++T LHAGGKF Y +SGGLHGVGISVVNALS + TV RQ + Sbjct: 118 HP-TEGKPTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVETTVKRQGFAW 176 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q F+ G +K + ++ GT F D IF +D L Q ++L+ Sbjct: 177 HQSFADGGQPVGTLRKGEPTDETGTTQLFYADGSIFES-TEYDFETLRARFQQYSFLNKG 235 Query: 241 VKTCWSCDK-------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENR--SLISS 285 ++ + ++ E AE + + + GL Y+ ++ +I+ Sbjct: 236 LRITLTDERVTESVEEEIASDAESAEDTPAHRQVIYQYDNGLIDYVTYLNSSKKVEVINP 295 Query: 286 EIFTGKTEKKG--THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 ++ ++E K +E A+ W + +Y NTI T EGGTHE G R A+T I Sbjct: 296 DVIAFESENKDLNGRSIALELAMQWTTAYSESVHTYANTINTHEGGTHEEGFRAAMTSLI 355 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +YA ++ ++ DD+ ++SV + EP+F GQTKTKL + +A+ V+ + Sbjct: 356 NRYAREKNIIKEKDENLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGNSEAKGFVQRVV 415 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQN 459 D +L +NP A ++ I+ ++ RL RK RE R+ + +PGKL DC Sbjct: 416 TDELGDWLERNPGPARDVIRKSIQAAQARLAARKARESTRRKGLLESGGMPGKLKDCQSK 475 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +E+++VEGDSAGGSA + RN QA+LPLRGKILNV A ++ N ++ ++ A Sbjct: 476 DPSKSEIYLVEGDSAGGSAVRGRNPETQAILPLRGKILNVERARLDRALGNAEVQAMITA 535 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + E RY K+++M DADVDG HI +LLLT ++ M L+E +++L PPL Sbjct: 536 FGAGIGEDFDVEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLVEHGYVYLAQPPL 595 Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDA 635 +RI Y + ++ + + L + G + I R+KGLGEM ++L ET MD Sbjct: 596 YRIKWSNAPHDYVYSDKERDEALTKGAAAGHRIPKDNGIQRYKGLGEMDYTELWETTMDP 655 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + RTLL+V ++ + + LMG + R FIQ A + + Sbjct: 656 DHRTLLQVTMDD----AASADQTFSILMGEDVESRRHFIQTNAKDVRFLD 701 >gi|54020117|ref|YP_115783.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232] gi|53987290|gb|AAV27491.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232] Length = 639 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 247/649 (38%), Positives = 366/649 (56%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y A +I +LEGLE VR RPGMYIGGT LHHL E++DNA+DE +AG+A+ I+V+ Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ D+GRGIP HPK+ S E++ T LHAGGKFD +Y++SGGLHGVG S Sbjct: 62 ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218 VVNALS EL V + R ++ QKF G + ++ GT+I F PD +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + ++ AYL+ R++ + + F F GG+ Y++ + Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRRIQFELIDKRS-------DFSQTFCFEGGISDYVEELSK 232 Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336 N + L ++ I++ + VE+A+ + E++ +I SY N I EGG+HE+GL Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L R + YA + + D+ + I+S+ P F GQTK KL + + ++ Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V A + F YL +NP +A K++ ++ + R + + + RK+A LPGKL Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ N++I Sbjct: 413 ADCGTKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + ++ A G ++ +RY+K+IIMTDAD DG+HI SLLLTF ++ LIE ++ Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I+QG K YA++E K+K L E K K I R+KGLGEM QL ET M Sbjct: 533 IAIPPLYKISQGKKIFYAYNEREKEKFLAEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D R + +V+I + L+ + LMGT R FI+E A + Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636 >gi|210634747|ref|ZP_03298275.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279] gi|210158687|gb|EEA89658.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279] Length = 674 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 252/685 (36%), Positives = 363/685 (52%), Gaps = 49/685 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y + I++LEGLE VR+RPGMYIG T LHHL E++DN++DE +AG+ IE Sbjct: 2 ANENEYGGNEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCTKIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TVVDNGRGIPV+ HP TLE+++T LHAGGKFDNS Y++SGGLHGVG Sbjct: 62 VTVHPDNSITVVDNGRGIPVDEHP-VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +++V V R I+ +FSRG + + T TF PD +IF Sbjct: 121 VSVVNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTG-TTTTFWPDEEIFET 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +D L Q A+L+ +K ++ P EEF + GG+ +++ E Sbjct: 180 TV-YDYDILRTRLQQTAFLNKNLKIVLKDERTAD-----PLVEEFCYAGGIVDFVKFLNE 233 Query: 279 NRSLI----SSEIFTGKTE--KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 +++ +G++E G VE AI W E S+ N I T EGG H Sbjct: 234 GKTVPEGLKHPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHM 293 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT I YA ++ ++ DD+ ++SV + +P+F GQTK KL S Sbjct: 294 EGFRAALTSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGS 353 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLR 448 + + + +L ++P +A ++++ + S+ R RK RE R+ + + Sbjct: 354 SFMRTLTRKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETAS 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS A TELFIVEGDSAGGSAK R R QA+LPLRGKILNV G + Sbjct: 414 LPGKLADCSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAF 473 Query: 509 NNQQIMDLVQALGCRTRS------QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ I L+ A+GC + + RY K+IIMTDADVDGAHI LLLTFFY+ Sbjct: 474 SSETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKY 533 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHD---EEHKQKILEEFKK------------- 606 M LI+ ++++ PP+F I K Y + + + + + K Sbjct: 534 MRPLIDAGYVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQA 593 Query: 607 -----HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + + R+KGLGEM QL T MD R L RV I + ++ + Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVV----ADRAVRE 649 Query: 662 LMGTKADERFKFIQERASFIDDVGT 686 LMG++ R ++I++ A + Sbjct: 650 LMGSEVGYRREYIEKHAHDARFLDA 674 >gi|295426266|ref|ZP_06818926.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus amylolyticus DSM 11664] gi|295064005|gb|EFG54953.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus amylolyticus DSM 11664] Length = 662 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 242/654 (37%), Positives = 355/654 (54%), Gaps = 33/654 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AGY I Sbjct: 16 AKANTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGYGKEIN 75 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV D GRG+P H K T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 76 VTIHKDNSVTVRDFGRGMPTGMHK--SGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 133 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 SVVNALS L V V R + ++F G P+ L+ + +K GT ITF+PD IF Sbjct: 134 SSVVNALSSYLKVRVVRGGKAYEEEFQNGGHPIGTLKCVGETNDKTGTTITFKPDATIFS 193 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + + + A+L VK + +++ + F + G+K++++ Sbjct: 194 T-TKYKYETIQERIRESAFLLKGVKFTLTDERDPE------HHDVFQYDDGIKSFVKYLN 246 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRV 336 E + S++F + ++ G +E++ + + E S+ N + T +GGTHE G R Sbjct: 247 EGK-GTISDVFYFEGKQDG---MEIEFSGQYSDGYSENLVSFVNNVRTADGGTHEVGARS 302 Query: 337 ALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 TR YA+ K+ +I D +LSV I E EF GQTK KL + A Sbjct: 303 GFTRAFNDYAKKQGLFTKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQA 362 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLP 450 + V+ + + +YL++N A +L++ + R +K R+ +R +K L Sbjct: 363 RSAVDALVYEKMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLS 422 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A + I N Sbjct: 423 GKLTPAQSKNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKN 482 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ +G ++++ +D Y+KVIIMTDAD DGAHI LLLTFFY+ M +IE+ Sbjct: 483 EEINTMIYTIGAGVGTEFKVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKG 542 Query: 571 HLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 +++ PPL+R+ +G + Y +E L E +K + RFKGLGEM A Sbjct: 543 KVYIALPPLYRLQKGRGKKAEIKYDWTDEE----LAEDEKKMGRGYSLQRFKGLGEMNAE 598 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T M+ R L+RV I+ + + LMG K R K+I+E F Sbjct: 599 QLWQTTMNPESRMLIRVRIDD----AALAERRVTTLMGDKVAARRKWIEENVKF 648 >gi|320533167|ref|ZP_08033889.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134627|gb|EFW26853.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 675 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 252/679 (37%), Positives = 372/679 (54%), Gaps = 33/679 (4%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + + +Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGY Sbjct: 2 SDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IEV++ +G + V DNGRGIPV+ HP +K T+E+++T LHAGGKF Y +SGG Sbjct: 62 CDHIEVTILADGGVRVSDNGRGIPVDEHP-TEHKPTVEVVMTILHAGGKFGGGGYAVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALS + V RQ ++ F+ G K + GT TF PDP Sbjct: 121 LHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITELVKGETTESTGTTQTFYPDP 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP--------------- 258 IF FD L + Q A+L+ ++ + ++ + G Sbjct: 181 SIFET-VDFDYETLRRRFQQMAFLNKGLRITLTDERIGVQDAGDEIAGDDSAPDAPEVGF 239 Query: 259 EKEEFYFPGGLKTYLQTKLENR--SLISSEIFTGKTEKK--GTHRGTVEWAIAWCEEN-P 313 + + + GL+ Y+ +++ LI EI + E+ TH ++E A+ W Sbjct: 240 RTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGETHSISLEIAMQWTSAYSE 299 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + +Y NTI T EGGTHE G R ALT + KYA +R ++ DD+ ++S Sbjct: 300 SVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVIS 359 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F GQTKTKL + +A+ V+ + +L +P +A ++ + + RL Sbjct: 360 VKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARLA 419 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE R+ + +PGKL DCS A +E+FIVEGDSAGGSA R+ +QA++ Sbjct: 420 ARKAREATRRKGVLESASMPGKLRDCSSKSAADSEIFIVEGDSAGGSAVGGRDPEHQAIM 479 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAH 550 P+RGKILNV A ++ ++ I L+ A G + LRY K++IM DADVDG H Sbjct: 480 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEDFDITKLRYGKIVIMADADVDGQH 539 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGK 609 IA+LLLT ++ M LIE H ++ PPL+R+ + +A+ + + K+L ++ G+ Sbjct: 540 IATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLATGQEKGR 599 Query: 610 GKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 600 RLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDE----AADADETFAILMGDD 655 Query: 667 ADERFKFIQERASFIDDVG 685 ++R FIQ AS + + Sbjct: 656 VEQRRSFIQRNASDVRFLD 674 >gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B] gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1] gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1] gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B] Length = 620 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 242/635 (38%), Positives = 365/635 (57%), Gaps = 25/635 (3%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 MRPGMYIG T ++ LHHL E++DN++DE +AG+A I+V ++ + +TVVD+GRGIPV+ Sbjct: 1 MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 K + +E + T LHAGGKF Y++SGGLHGVG SVVNALS +L V V + + Sbjct: 61 IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q++ RG+ ++ LE + GT + F PDP+IF + FD +L K Q A+L+ Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 ++ S +E E +++ GG+ +Y++ EN+ +I E G Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ + + S+ N I T EGGTHE G R ALTR I YA+ + + + Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +D+ ++SV P+F GQTKTKL + + + + F+ +L++NP A Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K++E I S+ R+ ++ RE +K+ + LPGKLADCS N A ELFIVEGDSAG Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK RNR QA+LP+RGKILNV A +KI N++I L A+G + + +RY Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593 +K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ PP++ + G++ Y Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530 Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 EE ++ L+ + G+ K + R+KGLGEM QL ET MD R + RV ++ Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + + R +FI+ A + ++ Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 619 >gi|332177969|gb|AEE13658.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense DSM 14796] Length = 632 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 361/650 (55%), Gaps = 29/650 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y + I +LEG+E VR RPGMYIG K L HL EV+DN++DE +AGY I V++ Sbjct: 3 YTSKDIVVLEGMEAVRKRPGMYIGSIGIKGLLHLVYEVVDNSVDEFMAGYCKKISVTIHK 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + ++T+ D+GRGIP + H + NK+ LE++LTTLHAGGKF++ Y++SGGLHGVG+SVVN Sbjct: 63 SNYVTIEDDGRGIPTDIHEQ-TNKNALELVLTTLHAGGKFNDKVYKVSGGLHGVGVSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ TV R IF+Q+FSRG P+S ++ + +K GT+I F PD +IF D Sbjct: 122 ALSERFIATVYRDGKIFTQEFSRGNPVSEIKIIGE-SDKHGTKIKFLPDKEIFKDITWDT 180 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L Q A+L+ ++ +S ++ I EKE FY G+ +++ +N + Sbjct: 181 -DELKARFQEIAFLNPGLEIVFSDER-------IGEKETFYDEKGILGFVEYLNKNSKPL 232 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 S + E + + V+ A+ + I + N I T EGG+H + + +LT+ Sbjct: 233 YSPPIVIQGEYEEVY---VDIALQHVDSTYENIICFANNIATKEGGSHLTAFKNSLTKLT 289 Query: 343 KKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +YA+ + K + +D+ ++SV ++EP F GQTKTKL SL+A+ VE + Sbjct: 290 NQYAKDKKILKEDENFQGEDIRSGLTAVISVKLKEPLFEGQTKTKLSSLEAKNAVEKLME 349 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL-PGKLADCSQNI 460 + + + + + ++ + V +K PGKLA CS Sbjct: 350 KFIIELESKPEVANMIIKSSLAAKEAREAAKKARDMVRKKHDFTSSISLPGKLALCSSKK 409 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI NQ+I L ++ Sbjct: 410 PEECELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASI 469 Query: 521 GCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 G + ++LR+ K+IIMTDADVDG+HI +LLLT F++ LIE +F+ Sbjct: 470 GLSFYEEDKPVSDWIKNLRFHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVFIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+ I +G + YA ++E IL E K I RFKGLGEM SQL + AM+ Sbjct: 530 QPPLYMIRKGKERRYAMNDEELNDILSEI----KSPDSIQRFKGLGEMTPSQLWDVAMNP 585 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRT+L+V I + LMG + R FI+ A + ++ Sbjct: 586 EKRTILKVCIED----ASEANRIFEILMGDNVEYRKAFIERYAREVKNLD 631 >gi|58039710|ref|YP_191674.1| DNA topoisomerase IV subunit B [Gluconobacter oxydans 621H] gi|58002124|gb|AAW61018.1| DNA topoisomerase I [Gluconobacter oxydans 621H] Length = 671 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 341/666 (51%), Positives = 439/666 (65%), Gaps = 12/666 (1%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + + Y A I +LEGLEPVR RPGMYIGGTD+ A HHL SE++DNAM Sbjct: 10 TGKTRTGGARKGTVDTEYGAHDIEVLEGLEPVRRRPGMYIGGTDDTAYHHLASEILDNAM 69 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A I+V L+G L V DNGRGIP + HPKFP KS LE+I TTLHAGGKF Sbjct: 70 DEAVAGHATTIDVRLEGPRTLMVRDNGRGIPTDPHPKFPEKSALEVIFTTLHAGGKFSGK 129 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y+ SGGLHGVG SVVNALS++L V VAR T++ Q F RG+ L+PL + N+RGT Sbjct: 130 AYDTSGGLHGVGSSVVNALSEKLEVEVARDRTLYRQDFVRGVSLAPLAEVGNAPNRRGTT 189 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-YGIPEKEEFYF 265 + F PDP+IFG+ F ARL +M SKA L V W C+ + P + F Sbjct: 190 VRFTPDPEIFGNHH-FSPARLYRMCCSKAALFRGVTIQWKCEPSFIKAGDETPVEATIQF 248 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVEWAIAWCEENPEIT-SYCN 320 P GL+ L +L + + I+ G E G G VEWA+A+ E S+CN Sbjct: 249 PNGLEDALSAELGPDPDLLTPIWAGDVELPIAADGRTGGRVEWAVAFLESGTASLSSFCN 308 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFA 380 TI T +GGTHE+G R AL +G++ + + KRA +I ++D++ S LSVFIR+P+F Sbjct: 309 TIPTPQGGTHEAGFRAALVKGLRAWGVQRKVKRAAAISAEDVLGSVAAKLSVFIRDPQFQ 368 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQTK KL S +A R VE ALRD DH+L NP +A LL +++ER+EERLRRR+ ++ R Sbjct: 369 GQTKDKLTSQEASRLVEGALRDRVDHWLGGNPQQADTLLAFMVERAEERLRRREVKDTAR 428 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K+A RKLRLPGKL DC++ A TELF+VEG+SAGGSA+QAR+R QAVLPLRGKILNVA Sbjct: 429 KSATRKLRLPGKLTDCTRENAAETELFLVEGESAGGSARQARDRETQAVLPLRGKILNVA 488 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 SA ++K+R NQ++ DL +ALGC + + LRY +VIIMTDADVDGAHIASLL+TFFY Sbjct: 489 SATTDKLRANQELRDLTEALGCGIGASFDISRLRYGRVIIMTDADVDGAHIASLLMTFFY 548 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK-QKILEEFKKHGKGKIEISRFKG 619 +EM +LI HL L PPL+RIT G K+VYA D++ + ++I +FK + K+E+SRFKG Sbjct: 549 REMPELIRHGHLHLAQPPLYRITHGPKTVYAMDDQDRVRRIKADFKPN--AKVEVSRFKG 606 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM LKET MD +RTLLRV T + + LMG K + RF+FIQE A Sbjct: 607 LGEMPVKDLKETTMDPARRTLLRVITP--AEDRLATSERVESLMGRKPELRFRFIQEHAR 664 Query: 680 FIDDVG 685 +D++ Sbjct: 665 SVDELD 670 >gi|111219512|ref|YP_710306.1| DNA gyrase subunit B [Frankia alni ACN14a] gi|111147044|emb|CAJ58691.1| DNA gyrase subunit B [Frankia alni ACN14a] Length = 656 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 250/669 (37%), Positives = 361/669 (53%), Gaps = 29/669 (4%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 D+ A + YDASSI++LEGL+ VR RPGMYIG T E+ LHHL EV+DNA+DE + Sbjct: 2 DTSAQNEGTRRVAYDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGY + I VSL +G + VVDNGRGIPV HP + +E++LTTLHAGGKFD +Y + Sbjct: 62 AGYCDTITVSLLADGAVRVVDNGRGIPVGMHP-TEKRPAVEVVLTTLHAGGKFDGKSYAV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS +L V + ++ Q + G + K K GT +TF Sbjct: 121 SGGLHGVGVSVVNALSTKLDVEIQVDGHVWFQPY-VGTRPAAPLVKTGTTKKTGTSVTFW 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 DP IF + L + Q A+L+ + ++ + + + GL Sbjct: 180 ADPTIFET-TEYKFETLSRRLQEMAFLNKGLSITLIDER-----PEERLEVTYKYTNGLV 233 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++ + I + + +++ G E A+ W + ++ NTI T EGGT Sbjct: 234 DFVAHLNATKDAIHRSVISLESKGVGI---EAELAMQWNAGYSESVYTFANTINTHEGGT 290 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI---------ISDDLMISAVGILSVFIREPEFA 380 HE G R ALT + YA+ + + DD+ I+SV + +P+F Sbjct: 291 HEEGFRAALTSAVNAYAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFE 350 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 GQTKTKL + +A++ V+ + N EA ++ ++ R+ R+ R+ Sbjct: 351 GQTKTKLGNTEAKKFVQEMCYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTR 410 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RK + LPGKLADC EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV Sbjct: 411 RKGLLGGTGLPGKLADCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNV 470 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A +++ N ++ L+QALG + LRY K+++M DADVDG HI +LLLT Sbjct: 471 EKARIDRVLKNTEVQALIQALGTGIHDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLL 530 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKG--KIEISR 616 ++ M L+E H+FL PPL++I G + YA+ + + +++ + G+ K I R Sbjct: 531 FRFMRPLVEAGHVFLAQPPLYKIKWGREDWEYAYSDRERDGLVQRGVEAGRKLPKDAIQR 590 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM A++L +T MD +KR LL+V ++ + + LMG D R FIQ Sbjct: 591 FKGLGEMNATELWDTTMDPDKRILLQVTLDD----AAVADELFSVLMGEDVDARRSFIQR 646 Query: 677 RASFIDDVG 685 A + + Sbjct: 647 NAKDVRFLD 655 >gi|94992112|ref|YP_600211.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096] gi|94545620|gb|ABF35667.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096] Length = 651 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 251/653 (38%), Positives = 372/653 (56%), Gaps = 25/653 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL-FSEVIDNAMDEVIAGYANL 96 + YDAS I++LEGLE VRMRPGMYIG T + + E++DN++DE +AG+A+ Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKAGFASISVWEIVDNSIDEALAGFASH 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAGGKF Y++SGGLHG Sbjct: 69 IKVFIEADNSITVVDDGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHG 127 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 VGSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIF 186 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD + L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 TETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFL 241 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 NDKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFR 298 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + Sbjct: 299 AALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVV 358 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 + + F +L++NP A K++E I S+ R+ ++ RE +K+ + LPGK Sbjct: 359 KITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS N A+ ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++ Sbjct: 419 LADCSSNDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E ++ Sbjct: 479 IRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 538 Query: 573 FLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 ++ PP++ + G++ Y E+ + LE++ G+ K + R+KGLGEM Q Sbjct: 539 YIAQPPIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYS-IGRSKPTVQRYKGLGEMDDHQ 597 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 L ET MD R + RV ++ + + LMG + + R FI+E A + Sbjct: 598 LWETTMDPENRLMARVTVDD----AAEADKVFDMLMGDRVEPRRDFIEENAVY 646 >gi|306834803|ref|ZP_07467867.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium accolens ATCC 49726] gi|304569331|gb|EFM44832.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium accolens ATCC 49726] Length = 689 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 250/697 (35%), Positives = 375/697 (53%), Gaps = 64/697 (9%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YDA SI ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AG+A+ + V Sbjct: 4 EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGFADKVTVK 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V+DNGRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVGIS Sbjct: 64 LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + + R+ + Q F IP +E GT+I F DP+IF Sbjct: 122 VVNALSTRVEAEIKREGKHWYQNFQNAIPDDLVE--GGNARGTGTKIRFWADPEIFETT- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258 FD + + Q A+L+ + ++ E+ + Sbjct: 179 EFDYDTIARRLQEMAFLNKGLTIELIDERVTEEQIELEEIADAESGEASADETSFDDVPD 238 Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296 +K F++P GL Y++ +++S I I + + + + Sbjct: 239 AGDTFNEEADSKNVTKADKKRRKKITFHYPEGLTDYVKFLNKSKSAIHPTIVSFEAKGED 298 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA+ + + Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKDK 355 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD ++SV + +P+F GQTKTKL + + + V+ ++ + + + NP Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDANPA 415 Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA ++ + + R+ RK RE+ RK+A LPGKLADC +EL+IVEGD Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + Sbjct: 476 SAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 LRY+K+++M DADVDG HIA+LLLT ++ M L+E H++L +PPL+++ + YA Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTPGYA 595 Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 ++ + K+L E + + + I R+KGLGEM AS+L ET +D + R L RV D Sbjct: 596 FSDDERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRV----D 651 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L + + + LMG R FI RA + + Sbjct: 652 LEDAQRADELFSILMGDDVAARRSFITRRAKDVRFLD 688 >gi|1708089|sp|P50074|GYRBR_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-resistant gi|581742|emb|CAA78951.1| gyrase B (novobiocin-resistant) [Streptomyces caeruleus] Length = 677 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 237/679 (34%), Positives = 361/679 (53%), Gaps = 23/679 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + +YDA++I +L+GL+ VR RPGMYIG T E+ LHHL E++ Sbjct: 5 DTRTATDTRGSEQPGHVGTASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG A+ I+V++ +G + VVDNGRGIPV HP + +E++LT LHAGGK Sbjct: 65 DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y +SGGLHGVG+SVVNALS L + ++Q + G P +PL + E Sbjct: 124 FGGGGYGVSGGLHGVGLSVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR- 182 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------EIAE 253 GT +TF D IF + L + Q A+L+G + + ++ + A+ Sbjct: 183 TGTSLTFWADGDIFET-TEYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEAD 241 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313 + + + GG+ ++ + + + + E A+ W + Sbjct: 242 SDPTAKTVSYRYDGGITDFVVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYT 301 Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370 + + SY N I T EGGTHE G R ALT + +YA + + ++ +D+ I+ Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAII 361 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV + EP+F GQTKTKL + + + ++ + + + +NP EA ++ ++ + R+ Sbjct: 362 SVNVGEPQFEGQTKTKLGNTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARV 421 Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R++ R+ + LPGKL+DC N +E+FIVEGDSAGGSAK RN QA+ Sbjct: 422 AARKARDLTRRKGLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAI 481 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A +K+ NQ+ L+ A G + LRY K+I+M DADVDG Sbjct: 482 LPIRGKILNVEKARIDKVLQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQ 541 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606 HI++LLLTF ++ M L+E+ H+ L PPL++I + YA+ + + +LE Sbjct: 542 HISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDG 601 Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 I RFKGLGEM A +L+ T MD + R L +V ++ D + LMG Sbjct: 602 RRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDD----AAFADDLFSVLMGED 657 Query: 667 ADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 658 VEARRHFIQRNAQDVRFLD 676 >gi|255324004|ref|ZP_05365129.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141] gi|255298861|gb|EET78153.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141] Length = 689 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 64/697 (9%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YDA SI ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+ + V Sbjct: 4 EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGYADKVTVK 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V+DNGRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVGIS Sbjct: 64 LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + + R + Q F IP +E GT+I F DP++F Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPEVFETT- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258 +D + + Q A+L+ + ++ E+ + Sbjct: 179 EYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSFDDAPD 238 Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296 +K F++P GL Y++ ++++ I I + + + Sbjct: 239 AGDTFNEESGEAEDAAAEKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFDAKGED 298 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA+ + ++ Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEK 355 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD ++SV + +P+F GQTKTKL + + + V+ A+ + + + NP Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPA 415 Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA ++ + + R+ RK RE+ RK+A LPGKLADC +EL+IVEGD Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + Sbjct: 476 SAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 LRY+K+++M DADVDG HIA+LLLT ++ M L+E H+FL +PPL+++ + YA Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTPGYA 595 Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + K+L E + + + I R+KGLGEM A++L ET +D + R L RV D Sbjct: 596 FSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRV----D 651 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L + + + LMG R FI RA + + Sbjct: 652 LEDAQRADELFSILMGDDVSARRSFITRRAKDVRFLD 688 >gi|291519486|emb|CBK74707.1| DNA topoisomerase IV subunit B [Butyrivibrio fibrisolvens 16/4] Length = 641 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 238/655 (36%), Positives = 349/655 (53%), Gaps = 32/655 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD SSI +LEGLE VR RPGMYIG T K L+HL E++DN++DE +AG + I V+L+ Sbjct: 6 TYDESSIAVLEGLEAVRKRPGMYIGSTSRKGLNHLIYEIVDNSVDEHLAGECDTIYVTLE 65 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV DNGRGIPV H K ++ +TLHAGGKFD+S Y+ SGGLHGVG SVV Sbjct: 66 KDGSCTVEDNGRGIPVGMHAK--GVPAARLVFSTLHAGGKFDDSVYKTSGGLHGVGSSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKIFGD 218 NALS+ + V ++R + ++ RG+P L K NK GT+I F PD +IF Sbjct: 124 NALSEYMVVDISRDGFVHHDRYERGVPTEKLVDGLLPKISKTNKHGTKINFLPDAEIFEK 183 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + AYL+ + ++ + PE ++ P G+K +++ + Sbjct: 184 TY-FKEDEVKSRLHETAYLNPGLTINYADLR-----GETPEYITYHEPEGIKGFVKEINK 237 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ + +E A +C E I +CN I EGGTH +G + Sbjct: 238 TAETLH-DVVYFSGKCDDV---ELEVAFQYCNEFKENILGFCNNIYNSEGGTHITGFKTV 293 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT I YA + + D+ I+S+ +P F GQTKTKL + DA + Sbjct: 294 LTTVINNYARELGILKDKDANFTGADVRNGITAIVSIKHPDPRFEGQTKTKLDNPDASKA 353 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + +D F + +N ++ + ++ R K + GKLA+ Sbjct: 354 TQKVCQDEFVLFFDRNLETLKAIISCAEKSAKIRKSEEKAKTNLLTKQKFSFDQNGKLAN 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C A E+FIVEGDSAGGSAK+ARNR QA++P+RGKILNV A +K+ N +I Sbjct: 414 CESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIMPIRGKILNVEKASMDKVLANAEIKT 473 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 L+ A GC + + LRY+K++IM DADVDGAHI++LLLTFFY+ M +LI + H Sbjct: 474 LINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTFFYRFMPELIREGH 533 Query: 572 LFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL++ I + Y +D+ ++ ++ + + R+KGLGEM A QL E Sbjct: 534 VYIAMPPLYKAIPTKGEEEYLYDDVALERYRKKMEG---KTFTLQRYKGLGEMDAEQLWE 590 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T +D +R L VEI L + + T+ LMG+ R +FI + A + + Sbjct: 591 TTLDPERRKLKLVEIEDGLMASEVTE----LLMGSDVAPRKQFIYKHAKEAE-LD 640 >gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens] Length = 640 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 239/650 (36%), Positives = 358/650 (55%), Gaps = 26/650 (4%) Query: 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109 ++LEGLE VR RPGMYIG T K LHHL EV+DNA+DE AG+A+ ++V + +G +++ Sbjct: 2 QVLEGLEAVRKRPGMYIGSTGTKGLHHLVYEVLDNAIDEAQAGFASTVDVVIHTDGSVSI 61 Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSD 167 DNGRGIP + HP KS LE +LT LHAGGKF + Y +SGGLHGVGISVVNALS+ Sbjct: 62 SDNGRGIPTDVHP-VTRKSALETVLTVLHAGGKFGGESSGYSVSGGLHGVGISVVNALSE 120 Query: 168 ELHVTVARQNTIFSQKFSRGI---PLSPLEKKEKVRNKRGTRITFRPD---PKIFGDKAG 221 + VTV R + Q F G PLS + + GTR+ F PD ++F Sbjct: 121 RVDVTVWRNGHEYRQSFEFGKAVSPLSAFPLPNDQKGRTGTRVKFLPDKQGKQLFTSTTE 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD + + A+L+ +V + +EK ++F GGL Y+ ++ Sbjct: 181 FDYNTISGRARELAFLNPQVTINLMQEHANSEKV---RSNAYHFSGGLNEYVLWLNNDKE 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + + E++G V + + I Y N+I T +GGTH G++ A+TR Sbjct: 238 RLHEP-ISIHREREGVA-IDVALQWSADQYTDTILGYANSIRTSDGGTHLDGMKAAVTRT 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + ++ ++ D +++V + PEF GQTKT+L + + +R V+ A Sbjct: 296 LNTLGRKAKILKEKDENLSGDHAREGLTCVVAVKVPNPEFEGQTKTRLGNPEVRRIVDQA 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +++ YL Q+P +L ++ ++ + V RK ++ LPGKL+DCS Sbjct: 356 VQELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSC 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ I NQ+I +L+ Sbjct: 416 TDPRNAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDDAAIYKNQEIQNLIL 475 Query: 519 ALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + + +D LRY K+II+TDADVDGAHI +LLLTFF++ L E +++ P Sbjct: 476 ALGLGVKGEEFSKDSLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEAGCIYVGVP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+++ +G ++ Y +E + +L+ F + I RFKGLGEM+ QL ET +D + Sbjct: 536 PLYKVERGKQAHYCFNESDLKNVLKTFPSN--ASYNIQRFKGLGEMMPQQLWETTLDPQQ 593 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 R L + + + + LMG K + R + I+ AS ++++ Sbjct: 594 RMLKLLTLED----AAEASMMFSTLMGDKVEPRKELIRTNASRMKLENLD 639 >gi|331082962|ref|ZP_08332082.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399957|gb|EGG79615.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium 6_1_63FAA] Length = 640 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 246/661 (37%), Positives = 347/661 (52%), Gaps = 37/661 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDASSI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY I Sbjct: 2 AKKNTYDASSITVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGYCKNIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G T+ D+GRGIPV H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEKDGSATIEDDGRGIPVGMHEK--GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS L + V+ I + RGIP PLE K + + GT I F PD Sbjct: 120 SSVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + + AYL+ + + ++ E+ F+ P G+ ++ Sbjct: 179 EIFEK-TRFSSTEVKSRLHETAYLNPELTILFQDNR-----GVESEEIVFHEPDGIVGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + I K E G TVE A + E + +CN I EGGTH + Sbjct: 233 KDLNKKSECIHEP-VYFKGESDGI---TVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + YA ++ + D+ ++S+ P F GQTKTKL + Sbjct: 289 GFKTTFTSVMNTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + + Y +N +L + ++ R K + Sbjct: 349 DASKATGKVTGEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL++C + E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLSNCEKRDPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 I + H+++ PPL++ T+G + Y +D+ K LE++++ KG + R+KGLGEM Sbjct: 529 IYEGHVYIAMPPLYKAMPTKGKEE-YLYDD----KALEKYRRTHKGSFTLQRYKGLGEMD 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET ++ R L VEI + + T+ LMGT+ R FI E A + Sbjct: 584 AQQLWETTLNPETRMLRLVEIEDARMASEVTE----ILMGTEVPPRKAFIYEHARDA-QL 638 Query: 685 G 685 Sbjct: 639 D 639 >gi|71893463|ref|YP_278909.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J] gi|71851590|gb|AAZ44198.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J] Length = 639 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 247/649 (38%), Positives = 367/649 (56%), Gaps = 21/649 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +Y A +I +LEGLE VR RPGMYIGGT LHHL E++DNA+DE +AG+A+ I+V+ Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGTGINELHHLVWEIVDNAVDEALAGFASKIKVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ D+GRGIP HPK+ S E++ T LHAGGKFD +Y++SGGLHGVG S Sbjct: 62 ILDDFKISIEDDGRGIPTGIHPKYE-ISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGD 218 VVNALS EL V + R ++ QKF G + ++ GT+I F PD +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + ++ AYL+ R++ + + F F GG+ Y++ + Sbjct: 181 N-SFQLLTIFNRLKNTAYLTRRIQFELIDKRS-------DFSQTFCFEGGISDYVEELSK 232 Query: 279 N-RSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336 N + L ++ I++ + VE+A+ + E++ +I SY N I EGG+HE+GL Sbjct: 233 NFKKLTNTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCD 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L R + YA + + D+ + I+S+ P F GQTK KL + + ++ Sbjct: 293 GLLRILNNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQ 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 V A + F YL +NP +A K++ ++ + R + + + RK+A LPGKL Sbjct: 353 FVNKAFSEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKL 412 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + EL+IVEG+SAGGSAK R+R QA+LPLRGK++N EK+ N++I Sbjct: 413 ADCGTKNSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEI 472 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + ++ A G ++ +RY+K+IIMTDAD DG+HI SLLLTF ++ LIE ++ Sbjct: 473 LSMITAFGTGVGPEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVY 532 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL++I+QG K YA++E+ K+K L E K K I R+KGLGEM QL ET M Sbjct: 533 IAIPPLYKISQGKKIFYAYNEKEKEKYLTEILKEN-SKFTIQRYKGLGEMNPEQLWETTM 591 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D R + +V+I + L+ + LMGT R FI+E A + Sbjct: 592 DPQTRRMYQVQI----HDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAK 636 >gi|210612462|ref|ZP_03289320.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787] gi|210151570|gb|EEA82577.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787] Length = 640 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 243/660 (36%), Positives = 349/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI ILEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I+ Sbjct: 2 AKQNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCDKIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV+DNGRG+PV H K S I+ TTLHAGGKFD++ Y+ SGGLHGVG Sbjct: 62 VILEKDGSATVIDNGRGVPVGMHQK--GVSAARIVYTTLHAGGKFDDTAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V ++R+ I ++ RGIP+ LE K R GT + F PD Sbjct: 120 SSVVNALSIYMDVKISREGAIHHDRYERGIPVVELENGLLPVIGKTRK-TGTEVNFLPDD 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + AYL+ + + + ++ ++ G+ ++ Sbjct: 179 TIFEK-TRFKAEEVKSRLHETAYLNPNLTIIFEDRRGAQTEHIE-----YHEEDGILGFI 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + I K E +G VE + E + + +CN I EGGTH + Sbjct: 233 RDLNQKKEAIHEP-IYFKGESEGI---EVEVVFQYVNEFHENVLGFCNNIYNAEGGTHLT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T + +YA ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 289 GFKTTFTTAMNQYARELGILKEKDSNFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNP 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + + Y +N K++ + ++ R K + Sbjct: 349 DAAKATGKVTGEEIVRYFDRNLDTLKKVISCAEKAAKIRKTEEKAKTNLLTKQKYSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK AR+RS QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKTARDRSYQAILPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + + Y +D+ K LE ++K KG + R+KGLGEM A Sbjct: 529 IFEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALERYRKRQKGPFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L VEI + T+ LMG++ R FI E A+ + + Sbjct: 585 DQLWETTLNPETRMLKLVEIEDARMASSVTE----MLMGSEVPPRRAFIYENATEAE-LD 639 >gi|311741695|ref|ZP_07715517.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium pseudogenitalium ATCC 33035] gi|311303216|gb|EFQ79297.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium pseudogenitalium ATCC 33035] Length = 689 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 249/697 (35%), Positives = 373/697 (53%), Gaps = 64/697 (9%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YDA SI ILEGLE VR RPGMYIG T + LHHL E++DN++DE +AGYA+ + V Sbjct: 4 EHAYDAGSITILEGLEAVRKRPGMYIGSTGSRGLHHLIWEIVDNSVDEAMAGYADKVTVK 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V+DNGRGIPVE H T+++++T LHAGGKFD+ +Y +SGGLHGVGIS Sbjct: 64 LLEDGGVEVIDNGRGIPVEMH--ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGIS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + + R + Q F IP +E GT+I F DP++F Sbjct: 122 VVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPEVFETT- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP---------------------- 258 +D + + Q A+L+ + ++ E+ + Sbjct: 179 EYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSFDDAPD 238 Query: 259 ----------------------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG 296 +K F++P GL Y++ ++++ I I + + + Sbjct: 239 AGDTFNEESGEAKDAAADKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFDAKGED 298 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKR 353 VE A+ W + + ++ NTI T EGGTHE G R ALT + +YA+ + ++ Sbjct: 299 H---EVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEK 355 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPI 413 ++ DD ++SV + +P+F GQTKTKL + + + V+ A+ + + + NP Sbjct: 356 DGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPA 415 Query: 414 EATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 EA ++ + + R+ RK RE+ RK+A LPGKLADC +EL+IVEGD Sbjct: 416 EAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAK R+ QA+LPLRGKILNV A +K+ N ++ ++ ALG ++ + Sbjct: 476 SAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKK 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YA 591 LRY+K+++M DADVDG HIA+LLLT ++ M L+E H+FL +PPL+++ + YA Sbjct: 536 LRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTPGYA 595 Query: 592 HDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + K+L E + + + I R+KGLGEM A++L ET +D + R L RV D Sbjct: 596 FSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRV----D 651 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L + + + LMG R FI RA + + Sbjct: 652 LEDAQRADELFSILMGDDVSARRSFITRRAKDVRFLD 688 >gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 620 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 243/630 (38%), Positives = 362/630 (57%), Gaps = 24/630 (3%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 MRPGMYIG T ++ LHHL E++DN++DE +AG+A IEV ++ + +TVVD+GRGIPV+ Sbjct: 1 MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFATHIEVFIEKDDSITVVDDGRGIPVD 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 K + +E + T LHAGGKF Y++SGGLHGVG SVVNALS +L V V R I Sbjct: 61 IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVAVHRNGKI 119 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q++ RG +S L ++ GT + F PDP+IF + FD +L K Q A+L+ Sbjct: 120 HYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 ++ + +E E +++ +++ GG+ +Y++ EN+ +I E G Sbjct: 179 GLRISITDKREGIE-----QEKHYHYEGGISSYVEFINENKEVIFENPIYTDGELDGI-- 231 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ + + S+ N I T EGGTHE G R ALTR I YA + ++ + Sbjct: 232 -SVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +D+ ++SV P+F GQTKTKL + + + + F +L++NP A Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K++E I S+ R+ ++ RE +K+ + LPGKLADCS N A ELFIVEGDSAG Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK R+R +QA+LP+RGKILNV A +KI N++I L A+G +++ RY Sbjct: 411 GSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAEFDVSKARY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593 K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ PP++ + G++ Y Sbjct: 471 HKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPG 530 Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 E Q+ + G+ K + R+KGLGEM QL ET MD R + RV ++ Sbjct: 531 ANQEIELQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680 + + LMG + + R +FI+E A + Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEENAVY 615 >gi|308235537|ref|ZP_07666274.1| DNA gyrase subunit B [Gardnerella vaginalis ATCC 14018] gi|311114018|ref|YP_003985239.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella vaginalis ATCC 14019] gi|310945512|gb|ADP38216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella vaginalis ATCC 14019] Length = 691 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 248/696 (35%), Positives = 371/696 (53%), Gaps = 30/696 (4%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73 S E + ++ D+ + S ++YDAS +R+LEGLE VR+RPGMYIG T + Sbjct: 3 NTEDNSMENSVEEHKLDDAQLDDSLSP-EHYDASDLRVLEGLEAVRIRPGMYIGSTGPRG 61 Query: 74 LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 LHHL E++DN++DE +AGYA+ IEV++ + + VVD+GRGIPV+ P S +E + Sbjct: 62 LHHLVYEIVDNSVDEALAGYASHIEVTILPDNAIKVVDDGRGIPVDEVP-GEGVSGVETV 120 Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193 +T LHAGGKF Y +SGGLHGVGISVVNALS + + V RQ ++Q + P +PL Sbjct: 121 MTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPL 180 Query: 194 EKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 EK + + GT +TF PD IF +D L Q A+L+ +K + ++ Sbjct: 181 EKGKPMEEGESTGTSVTFWPDGAIFET-TTYDFETLRSRFQQMAFLNKGLKISLTDLRKP 239 Query: 252 AEKYGIPEKEE------------FYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTH 298 E E + + G+K Y+ +++R + E E + Sbjct: 240 DEAGDEVTGENESTSEEKHQSVSYKYDHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEI 299 Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355 + E A+ W + ++ NTI T EGGTHE G R ALT + +YA ++ Sbjct: 300 GISAEIAMQWTVAYSEAVHTFANTISTTEGGTHEEGFRAALTSLVNRYAREKNILKEKDT 359 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 ++ DD+ ++SV + P+F GQTKTKL + +A+ V+ + + + +P EA Sbjct: 360 NLSGDDVREGLTAVVSVKLTTPQFEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPSEA 419 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 +++ IE S R+ +K RE R+ +I +P KL DC N ELFIVEGDSA Sbjct: 420 KNIIQKAIEASRARIAAKKARENTRRKSIFETAGMPDKLKDCQSNNPEECELFIVEGDSA 479 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSA Q R+ QA+LPLRGKILN A +++ ++ I L+ A+G + +R Sbjct: 480 GGSAIQGRDPITQAILPLRGKILNTERASIDRMMKSETIESLITAVGGGYGEDFDLSKVR 539 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD 593 Y KVIIM DADVDGAHIA+L LT F++ M +I ++++ PPL+R+ + + + Sbjct: 540 YHKVIIMADADVDGAHIATLNLTLFFRYMRPMITAGYIYVAMPPLYRLKWSKGAHDFVYT 599 Query: 594 EEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 + + ++L E K G+ I R+KGLGEM +L ET MD R L ++ I Sbjct: 600 DAERDRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIED--- 656 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ + LMG + + R FIQ A + Sbjct: 657 -AARADETFSMLMGDEVEPRRLFIQRNAHDARFIDA 691 >gi|148377448|ref|YP_001256324.1| topoisomerase IV subunit B [Mycoplasma agalactiae PG2] gi|148291494|emb|CAL58880.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2] Length = 641 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 242/651 (37%), Positives = 353/651 (54%), Gaps = 32/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ NYDASSI+ L+GLE VR RPGMYIG TD LHHL E++DN++DE +AG N I V Sbjct: 5 SNSNYDASSIQQLKGLEAVRKRPGMYIGSTDVNGLHHLIWEIVDNSIDEALAGETNEIIV 64 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V DNGRGIPV P KS +E++ T LHAGGKF+ Y+ SGGLHGVG Sbjct: 65 ILKKDGSVVVSDNGRGIPVGKTP--SGKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGS 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L V R I+ F G + NKRGT I F P+ +IF Sbjct: 123 SVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGSTNKRGTSIQFWPNYEIFKK- 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F+ + + + ++L + + EEF + G+K +++ ++ Sbjct: 182 AKFNFETIAERLRESSFLISNLSIKLIDE-------QSERSEEFKYSNGIKAFVEFINDS 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 ++ + + K+ + +E + + N I S+ N + T +GGTHE GL+ A+ Sbjct: 235 KTALFNVYSF----KQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAI 290 Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 T+ +A + + + +D+ +LSV I E EF QTK KL + +A+ Sbjct: 291 TKTFNDFALDEKVLKGKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE A+ ++ +N A K+L+ + S+ R RK R RKT K L GK Sbjct: 351 VEEAVSKNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGK 410 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK R+R QA+LPLRGK++N A I N++ Sbjct: 411 LTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEE 470 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A+G + ++Y+KVIIMTDAD DGAHI LLLTFF+ M LIE+ + Sbjct: 471 INTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFIHMRRLIEEGKV 530 Query: 573 FLISPPLFRITQ---GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPLF++T + +YA DE +++L+ K+ E+ R+KGLGEM A QL Sbjct: 531 YIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNA----EVQRYKGLGEMNADQLW 586 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 ET M+ RTL++V I + ++ LMG + R ++I + +F Sbjct: 587 ETTMNPETRTLIQVRIQD----AALAERRVSTLMGDNVESRKEWINKNVNF 633 >gi|296137759|ref|YP_003645002.1| DNA gyrase subunit beta [Tsukamurella paurometabola DSM 20162] gi|296025893|gb|ADG76663.1| DNA gyrase, B subunit [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 247/695 (35%), Positives = 376/695 (54%), Gaps = 49/695 (7%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + A +S S NY A SI+ LEGLE VR RPGMYIG T + LHH+ EV+DN++DE + Sbjct: 2 AADNNAGKSGSGNYGADSIKQLEGLEAVRKRPGMYIGTTGPRGLHHMIWEVVDNSVDEAM 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+A ++V L +G + V+D+GRGIPV H K T++++LT+LHAGGKFD+ Y + Sbjct: 62 AGHATRVDVKLRADGGVEVIDDGRGIPVAMHAK--GIPTVQLVLTSLHAGGKFDSDAYAV 119 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR----GIPLSPLEKKEKVRNKRGTR 206 SGGLHGVGISVVNALS + V + + Q F ++ K + + GT Sbjct: 120 SGGLHGVGISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPTTRTGTT 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI--------------- 251 + F DPK+F + +D + + Q A+L+ + + ++ + Sbjct: 180 VRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDITEEAPS 239 Query: 252 ----------AEKYGIPEKEEFYFPGGLKTYLQTKL--ENRSLISSEIFTGKTEKKGTHR 299 AE + F++P GL Y++ ++S I + I + + ++KG Sbjct: 240 AHEEDVAAALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGKEKGH-- 297 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +E A+ W + ++ NTI T EGGTHE G R ALT +K YA+ + ++ Sbjct: 298 -EIEIAMQWNSGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEKDGE 356 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + DD+ ++SV + EP+F GQTKTKL + + + V+ R+ + NP +A Sbjct: 357 LSGDDIREGLAAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPADAK 416 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 +++ ++ RL RK RE V RK+A LPGKLADC N E++IVEGDSAG Sbjct: 417 TIVQKAAASAQARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGDSAG 476 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK R+ QA+LP+RGKI+NV A +K+ N ++ ++ A G ++ LRY Sbjct: 477 GSAKSGRDSMYQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGIHDEFDIAKLRY 536 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVYAHD 593 +K+++M DADVDG HI++LLLT ++ M L+E H++L PPL+++ +G + +A+ Sbjct: 537 KKIVLMADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQKGAEPEFAYS 596 Query: 594 EEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 + + +L E K GK + I R+KGLGEM A +L ET MD R L +V ++ Sbjct: 597 DAERDALLAEGLKSGKKINKDDGIQRYKGLGEMNAKELWETTMDPTVRVLKQVTLDD--- 653 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG R FI A + + Sbjct: 654 -AAAADELFSILMGEDVVARRSFIARNAKDVRFLD 687 >gi|311112567|ref|YP_003983789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] gi|310944061|gb|ADP40355.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] Length = 676 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 245/675 (36%), Positives = 362/675 (53%), Gaps = 39/675 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA+ IEV++ Sbjct: 8 EYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALAGYASHIEVTIQ 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D+GRGIPV+ HP +KST+E+++T LHAGGKF Y +SGGLHGVGISVV Sbjct: 68 ADGGVRVQDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V RQ + F+ G ++ KV K GT TF PDP+IF F Sbjct: 127 NALSKKVITEVHRQGYSWHISFANGGIPDGPLRRGKVSQKTGTIQTFYPDPEIFET-VEF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-----------------------PE 259 D L Q A+L+ + + +++ E Sbjct: 186 DFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRVGANAEGHR 245 Query: 260 KEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + + GL Y+ ++++I+ +I + E +E A+ W + S Sbjct: 246 TVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAE-DTVRHMALEVAMQWTGSYKESVHS 304 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375 Y NTI T EGGTHE G R ALT + +YA + + ++ +D+ ++S+ I Sbjct: 305 YANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKIS 364 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + +A+ + + D + +NP A ++ I ++ R+ RK Sbjct: 365 EPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQARMAARKA 424 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE R+ + +PGKL DC+ +E+++VEGDSAGGSA Q R+ ++QA+LPLRG Sbjct: 425 RETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQAILPLRG 484 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A ++ +N +I ++ A G + E RY K+++M DADVDG HI +L Sbjct: 485 KILNVERARLDRALSNAEIQAMITAFGTGIGDDFDLEKARYHKIVLMADADVDGQHITTL 544 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M LIE +++L PPL+RI Y + + + L + + + Sbjct: 545 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQAKNQRLPK 604 Query: 614 ---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 I R+KGLGEM ++L +T MD +RTLL+V++ + LMG + R Sbjct: 605 DNGIQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMED----AAAADQIFSVLMGEDVEAR 660 Query: 671 FKFIQERASFIDDVG 685 FIQ+ A I + Sbjct: 661 RDFIQQNAKDIRFLD 675 >gi|269314031|gb|ACZ36917.1| DNA gyrase B [Mycobacterium massiliense] Length = 651 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 242/664 (36%), Positives = 363/664 (54%), Gaps = 47/664 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA +EV++ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 61 DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS +L V + R + Q ++R P + + K GT + F DP+IF +D Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADPEIFET-TTYD 175 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258 + + Q +A+L+ + + ++ + Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKV 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + F++P GL +++ +S I + I + +G VE A+ W + + Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375 + NTI T EGGTHE G R ALT + KY + ++ ++ DD+ ++SV + Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + + + V+ + H+ NP +A ++ + ++ R+ RK Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ QA+LPLRG Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KI+NV A +++ N ++ ++ ALG ++ LRY K+++M DADVDG HI++L Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M L+E H+FL PPL+++ + +A+ + + ++E K GK KI Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591 Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM A +L ET MD + R L +V ++ + + LMG + Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647 Query: 670 RFKF 673 R F Sbjct: 648 RRSF 651 >gi|317509459|ref|ZP_07967077.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974] gi|316252288|gb|EFV11740.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974] Length = 678 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 244/688 (35%), Positives = 364/688 (52%), Gaps = 43/688 (6%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + + Y ASSI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE Sbjct: 2 SEKKNSEKKNAEKSTYGASSITILEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AGYA ++V+L +G + VVD+GRGIPV H T+E++LT LHAGGKFD+ +Y Sbjct: 62 AMAGYATRVDVTLLADGGIEVVDDGRGIPVAPH--ASGPPTVEVVLTVLHAGGKFDSDSY 119 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 +SGGLHGVGISVVNALS +L V + ++Q + P ++ + GT + Sbjct: 120 AVSGGLHGVGISVVNALSYKLEVEIDVDGHHWTQAYDNAKPGPLVK--GAAVKRTGTTVR 177 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE------------------ 250 F DPKIF +D + + Q A+L+ + + +E Sbjct: 178 FWADPKIFET-TRYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDTAELV 236 Query: 251 -----IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWA 305 K ++ E+++PGGL Y+ ++ I + I + + + +G VE A Sbjct: 237 RSEGDDEAKAPAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGH---EVEIA 293 Query: 306 IAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDL 362 + W + ++ NTI T EGGTHE G R ALT + KYA + ++ ++ DD+ Sbjct: 294 MQWNSGYTESVYTFANTINTHEGGTHEEGFRAALTSTVNKYARDKKILKEKDKNLSGDDV 353 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 ++SV + EP+F GQTKTKL + + + V+ + H+ NP EA ++ Sbjct: 354 REGLSAVISVKLSEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVIVSKA 413 Query: 423 IERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 + ++ R + R V RK+A LPGKLADC +E++IVEGDSAGGSAK Sbjct: 414 QQAAQARDAAQNARALVRRKSATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSG 473 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RN QA+LP+RGKI+NV A +++ N ++ ++ A G ++ LRY K+++M Sbjct: 474 RNSEFQAILPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGIHDEFDLAKLRYHKIVLM 533 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKI 600 DADVDG HI++LLLT ++ M L+E H++L +PPL+++ + YA+ + + + Sbjct: 534 ADADVDGQHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDSL 593 Query: 601 LE---EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 L K I R+KGLGEM A +L ET MD + RTL V ++ + Sbjct: 594 LSIGLGSGKKINKDDGIQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDD----AAAADE 649 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI A + + Sbjct: 650 LFSILMGEDVPARRGFIARNAKDVRFLD 677 >gi|300742652|ref|ZP_07072673.1| DNA gyrase, B subunit [Rothia dentocariosa M567] gi|300381837|gb|EFJ78399.1| DNA gyrase, B subunit [Rothia dentocariosa M567] Length = 676 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 244/675 (36%), Positives = 361/675 (53%), Gaps = 39/675 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA+ IEV++ Sbjct: 8 EYGASDITVLEGLEAVRKRPGMYIGSTTERGLHHLVYEVVDNSVDEALAGYASHIEVTIQ 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D+GRGIPV+ HP +KST+E+++T LHAGGKF Y +SGGLHGVGISVV Sbjct: 68 ADGGVRVQDDGRGIPVDEHP-TEHKSTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGISVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS ++ V RQ + F+ G ++ K K GT TF PDP+IF F Sbjct: 127 NALSKKVITEVHRQGYSWHISFANGGIPDGPLRRGKASQKTGTIQTFYPDPEIFET-VEF 185 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI-----------------------PE 259 D L Q A+L+ + + +++ E Sbjct: 186 DFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRVGANAEGHR 245 Query: 260 KEEFYFPGGLKTYLQT-KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + + GL Y+ ++++I+ +I + E +E A+ W + S Sbjct: 246 TVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAE-DTVRHMALEVAMQWTGSYKESVHS 304 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIR 375 Y NTI T EGGTHE G R ALT + +YA + + ++ +D+ ++S+ I Sbjct: 305 YANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKIS 364 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + +A+ + + D + +NP A ++ I ++ R+ RK Sbjct: 365 EPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQARMAARKA 424 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE R+ + +PGKL DC+ +E+++VEGDSAGGSA Q R+ ++QA+LPLRG Sbjct: 425 RETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQAILPLRG 484 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A ++ +N +I ++ A G + E RY K+++M DADVDG HI +L Sbjct: 485 KILNVERARLDRALSNAEIQAMITAFGTGIGDDFDLEKARYHKIVLMADADVDGQHITTL 544 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M LIE +++L PPL+RI Y + + + L + + + Sbjct: 545 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQAKNQRLPK 604 Query: 614 ---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 I R+KGLGEM ++L +T MD +RTLL+V++ + LMG + R Sbjct: 605 DNGIQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMED----AAAADQIFSVLMGEDVEAR 660 Query: 671 FKFIQERASFIDDVG 685 FIQ+ A I + Sbjct: 661 RDFIQQNAKDIRFLD 675 >gi|255513419|gb|EET89685.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 635 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 371/650 (57%), Gaps = 23/650 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +NY A I +L G + +R RP MYIG T HL EVIDN++DE +AGY I V Sbjct: 3 ENNYGARDIIVLSGPQGIRKRPAMYIGSTGSSGFIHLLYEVIDNSVDEAMAGYCKNILVK 62 Query: 101 LDGNGFL---TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 L + V D+GRGIPV+ PK K +E+I+T++HAG KF+N Y++SGGLHGV Sbjct: 63 LGRENGVDYAEVTDDGRGIPVDIMPK-EGKPAVEVIMTSIHAGAKFENKAYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G++VVNALS V V R + ++ FSRG+ S LE+ N+ GT I F PD +IF Sbjct: 122 GLTVVNALSSHTEVIVKRNSKVYRITFSRGVLTSGLEEIGTCGNETGTTIKFVPDTEIFS 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD +L + + ++LS +K +E + + FY G+ ++ Sbjct: 182 VDR-FDTIQLTERLRYLSFLSPGLKIKLVDLREDSSEETN-----FYSENGIVDFINYLR 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 +S +S I K++ +++ + N E+ S+ N I T EGGTH +G R A Sbjct: 236 GGKSDVSKPIIISKSDNSIKVDIGLQYVDGY---NEELLSFVNKIKTPEGGTHVTGFRGA 292 Query: 338 LTRGIKKYAELTQNKRA-ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LTR I Y + K+ ++I +D + +++V ++ PEF GQTK KL +++ + V Sbjct: 293 LTRAITNYVQKNSKKKTSVNIEGEDTREGLIAVVAVMMQNPEFEGQTKEKLGNVNIKSVV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLAD 455 EN +Y +NP EA K++E V +E R ++ RE+ RK ++ LPGKLAD Sbjct: 353 ENIAYTALSYYFEENPGEANKVIEKVSRAAEAREAAKRARELTRKKSLFEGAVLPGKLAD 412 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+++ E+FIVEG+SA GS+KQ R+R QA+LPLRGKILNV A EKI NN ++ Sbjct: 413 CTESDPDKAEIFIVEGESAAGSSKQGRDRFYQAILPLRGKILNVEKATDEKIFNNAELHL 472 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 +V A G + + E+LRY+K+I++TDADVDG+HI +LLLTFFY+ + LIE+ ++++ Sbjct: 473 MVTAFGTGIKEGFNIENLRYKKIILLTDADVDGSHIKTLLLTFFYRYLRPLIERGYIYIA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++++ G + YA+ + +++E GK + R+KGLGEM QL ET MD Sbjct: 533 QPPLYKVSHGREVKYAYSDSELSALMKE----NNGKGNVQRYKGLGEMNPEQLWETTMDP 588 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR + R+ I + N LMG R KF++E ++ + + Sbjct: 589 QKRIIKRISI----KDAQIADAIFNILMGMDVVPRRKFLEEHSTEVSFLD 634 >gi|269314033|gb|ACZ36918.1| DNA gyrase B [Mycobacterium bolletii] gi|269314039|gb|ACZ36921.1| DNA gyrase B [Mycobacterium massiliense] Length = 651 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 242/664 (36%), Positives = 363/664 (54%), Gaps = 47/664 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA +EV++ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 61 DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS +L V + R + Q ++R P + + K GT + F DP+IF +D Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEPGTLQK--GAATKKTGTTVRFWADPEIFET-TTYD 175 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258 + + Q +A+L+ + + ++ + Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKV 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + F++P GL +++ +S I + I + +G VE A+ W + + Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375 + NTI T EGGTHE G R ALT + KY + ++ ++ DD+ ++SV + Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + + + V+ + H+ NP +A ++ + ++ R+ RK Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ QA+LPLRG Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KI+NV A +++ N ++ ++ ALG ++ LRY K+++M DADVDG HI++L Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M L+E H+FL PPL+++ + +A+ + + ++E K GK KI Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGLKAGK-KIN 591 Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM A +L ET MD + R L +V ++ + + LMG + Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647 Query: 670 RFKF 673 R F Sbjct: 648 RRSF 651 >gi|71083152|ref|YP_265871.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1062] gi|71062265|gb|AAZ21268.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1062] Length = 685 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 268/697 (38%), Positives = 387/697 (55%), Gaps = 64/697 (9%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 NNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD+ +Y++SGGLHGV Sbjct: 62 DVKINSDGTITVRDDGRGIPVDMH-KGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L + + R + +F G +PL+ K + GT+ITF P +IF Sbjct: 121 GVSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKE-TGTQITFLPSKEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + ++K + A+L+ +K + + EK + F F GG+ ++ Sbjct: 180 S-IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIV-----FKFDGGVLEFVDFLD 233 Query: 278 ENRS--------LISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGG 328 E R + + + +K +++W ++ +I Y N I +GG Sbjct: 234 EKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWNASY---GEDIYPYTNNIYQKDGG 290 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH G R ALTR I KYA K ++I DD+ ++S I +P+F+ QTK K Sbjct: 291 THLLGFRSALTRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDK 350 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445 LVS + + VE+ + + + QNP + +L V++ + R RK RE RK A+ Sbjct: 351 LVSSEVRMIVESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALE 410 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500 LPGKLADC GTELFIVEGDSAGGSAKQ RNRSNQAVLPLRGKILN Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIV 470 Query: 501 -------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546 + K+ ++ +++ L+ ALG + + + +DLRY K+IIMTDADV Sbjct: 471 LKKNSNRDGSEHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADV 530 Query: 547 DGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI----- 600 DG+HI +LLLTFF + LIE H++L PPLF+I +GTK +Y DE+ + Sbjct: 531 DGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNN 590 Query: 601 --LEEFKK----------HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 L++ KK K ++ I RFKGLGEM +L T +D R LL+V+ +KD Sbjct: 591 KELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYSKD 650 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +D I+ LMG R FI A + ++ Sbjct: 651 IKKDQD---LIHTLMGNDVALRKDFIVSNAINVQNLD 684 >gi|167758061|ref|ZP_02430188.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704] gi|167663958|gb|EDS08088.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704] Length = 666 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI ILEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY + I Sbjct: 28 AKKNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEMVDNAVDEHLAGYCSEIR 87 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G T+ DNGRG+PV+ H S ++ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 88 VTLEKDGSATISDNGRGVPVDLH--ATGVSAERVVYTTLHAGGKFDDSAYKTSGGLHGVG 145 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V V+R I ++ RG P+ LE K R GT++ F PD Sbjct: 146 SSVVNALSTYMDVEVSRDGYIHHDRYERGKPVIELEDGLLPTIGKTRK-TGTKVNFLPDD 204 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + AYL+ + + + E ++ P G+ ++ Sbjct: 205 TIFEK-TRFRAEEVKSRMHETAYLNPDLTIIFEDRR-----GSETEHIVYHEPEGILGFI 258 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + + K E G VE A + E + + +CN I EGGTH + Sbjct: 259 EDLNSKKEAVHEP-VYFKGESDGI---EVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLT 314 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T I +Y+ ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 315 GFKTTFTTVINQYSRELGILKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNP 374 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + D Y +N K++ + ++ R + + Sbjct: 375 DAAKACSKVTNDEIIRYFDRNLDNLKKVISCAEKAAKIRKTEERAKTNLLTKQKYSFDSN 434 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK AR+R QA+LP+RGKILNV A +K+ N Sbjct: 435 GKLANCESKDAGKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLAN 494 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 495 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 554 Query: 567 IEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ + + Y +D+ K LE ++K G + R+KGLGEM A Sbjct: 555 IYEGHVYIAMPPLYKAMPKKGEEEYLYDD----KALERYRKTHDGPFTLQRYKGLGEMDA 610 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L VEI + T+ LMG++ R FI E A+ + + Sbjct: 611 QQLWETTLNPETRMLKLVEIEDARMASGVTE----MLMGSEVPPRRTFIYENATEAE-LD 665 >gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group] gi|75285839|sp|Q5NBJ3|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group] gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group] gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group] Length = 729 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 236/670 (35%), Positives = 373/670 (55%), Gaps = 24/670 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 S A + + Y A+++++LE L+ VR RPGMYIG T + LHHL E++DNA+ Sbjct: 72 ASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHLVYEILDNAV 131 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFD 144 DE AGYA ++V L G+ ++V DNGRGIP + HP+ KS +E +LT +HA Sbjct: 132 DEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQ-TKKSCVETVLTLMHAGGKFGGS 190 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRN 201 S Y +SGGLHGVG+SVVNALS+ L VTV R + Q +SRG ++ L + + + Sbjct: 191 KSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSRTLSDESSS 250 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 ++GTRI F PD IF FD + + A+L+ + + + E + Sbjct: 251 RQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKE----EDDLQVQHN 306 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNT 321 E+ + GGL Y++ ++ + + E G V + + Y N+ Sbjct: 307 EYCYAGGLVEYVKWLNTDKKSLHDP-IAFRKEMDGIT-VDVSLQWCSDSYSDTVLGYANS 364 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T +GGTH GL+ +LTR I +A+ ++ + IS+ + + I++V + PEF Sbjct: 365 IRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEF 424 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREV 438 GQTKT+L + + +R VE ++++ YL +P +L + +R + V Sbjct: 425 EGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELV 484 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 K+ ++ LPGKLADC+ + +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN Sbjct: 485 RTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 544 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLT 557 + + N++I +L+ ALG + + ++ LRY K++I+TDADVDGAHI +LLLT Sbjct: 545 IERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLT 604 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FF++ L ++ +++ PPL+++ +G ++ Y +D+ ++++ F + I RF Sbjct: 605 FFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTN--ASYHIQRF 662 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM+ +QL ET MD +R L ++++ + + LMGT+ D R + IQ Sbjct: 663 KGLGEMMPAQLWETTMDPERRMLKQLKVED----AAEANVVFSSLMGTRVDVRKQLIQNA 718 Query: 678 ASFI--DDVG 685 AS + + + Sbjct: 719 ASMVNLEHLD 728 >gi|325265376|ref|ZP_08132100.1| DNA topoisomerase IV subunit B [Clostridium sp. D5] gi|324029377|gb|EGB90668.1| DNA topoisomerase IV subunit B [Clostridium sp. D5] Length = 640 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 248/657 (37%), Positives = 353/657 (53%), Gaps = 35/657 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDA SI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AGY I V+L Sbjct: 5 NTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGYCTQIHVTL 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G T+ DNGRG+PV H K S I+ TTLHAGGKFD+S Y+ SGGLHGVG SV Sbjct: 65 EKDGSATIEDNGRGVPVGMHKK--GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIF 216 VNALS + V V+R+ + +F RGIP+ LE K R GT++ F PD IF Sbjct: 123 VNALSTYMDVQVSREGAVHHDRFERGIPVIELEDGLLPVIGKTRK-TGTKVNFLPDDTIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F A + AYL+ + + + PE ++ P G+ +++ Sbjct: 182 EK-TRFRAEEVKSRLHETAYLNPDLTIIFDDKR-----MESPEHIVYHEPDGILGFIKDL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLR 335 + + + I+ K E +G VE A+ + E + + +CN I EGGTH +G + Sbjct: 236 NQKKETLHEPIYY-KGESEGI---EVEVALQYVNEFHENVLGFCNNIYNAEGGTHLTGFK 291 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 T + +YA ++ + D+ I+S+ +P F GQTKTKL + DA Sbjct: 292 TTFTTVMNQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAA 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + D Y +N +L + ++ R K + GKL Sbjct: 352 KATGKVTGDEIVLYFDRNLETLKSVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+C A E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N +I Sbjct: 412 ANCESRDATKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEI 471 Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + Sbjct: 472 KTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYE 531 Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H+++ PPL+++ + + Y +D+ K LE++++ G + R+KGLGEM A QL Sbjct: 532 GHVYIAMPPLYKVMPKKGEEEYLYDD----KALEKYRRMHDGPFTLQRYKGLGEMDAQQL 587 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET +D R L VEI + T+ LMGT+ R FI E A+ + + Sbjct: 588 WETTLDPETRLLKLVEIEDARMASSVTE----MLMGTEVPPRRMFIYENAADAE-LD 639 >gi|302670820|ref|YP_003830780.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus B316] gi|302395293|gb|ADL34198.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus B316] Length = 640 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 238/657 (36%), Positives = 346/657 (52%), Gaps = 35/657 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDASSI +LEGLE VR RPGMYIG + L+HL E++DNA+DE +AG+ I V+L Sbjct: 5 EQYDASSITVLEGLEAVRKRPGMYIGSVTTRGLNHLVYEIVDNAVDEHLAGFCTQIHVTL 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G TV DNGRGIPV H K + ++LT LHAGGKFDN+ Y+ SGGLHGVG SV Sbjct: 65 EADGSATVEDNGRGIPVGMHAK--GITAERVVLTMLHAGGKFDNNAYKTSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----KKEKVRNKRGTRITFRPDPKIFG 217 VNALS ++V + + I+ + RGIP + L + GT I F PD IF Sbjct: 123 VNALSTRMNVRIKKDGFIYEDSYERGIPTTKLVNGLLTPVGSTRETGTTINFLPDDTIFE 182 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + AYL+ + + + E+Y F+ P G+ +++ Sbjct: 183 K-TRFKEDDIKSRLHETAYLNPSLTIIFQDKRPGVEEYIE-----FHEPDGITGFIKDMN 236 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRV 336 +++ + ++ + E +G VE A + E + E+ +CN I EGGTH +G + Sbjct: 237 KSKEAVH-DVVSFSGESEGV---EVEVAFQYVNEFHEEVLGFCNNIYNAEGGTHLTGFKT 292 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 T I +YA + + D+ ++S+ +P F GQTKTKL + DA + Sbjct: 293 MFTNIINQYARELNILKDKDNNFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNQDAAK 352 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V D + +N ++ + ++ R K + GKLA Sbjct: 353 VVSKITNDEMTRFFDRNLETLKAIIGCAEKAAKIRKTEEKAKTNMLTKQKYSFDSNGKLA 412 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 +C A E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A +K+ N +I Sbjct: 413 NCISKDASKCEIFIVEGDSAGGSAKMARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472 Query: 515 DLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ A GC + + LRY+K+IIM DADVDG HI++LLLT FY+ M +LI Q Sbjct: 473 TMINAFGCGFSEGYGNDFDINKLRYDKIIIMADADVDGEHISTLLLTLFYRFMPELIYQG 532 Query: 571 HLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H+++ PPL++ +G + Y +D+ L +++ KG + R+KGLGEM A QL Sbjct: 533 HVYVAMPPLYKAMPARGKEE-YLYDD----SALAKYRATHKGNFTLQRYKGLGEMDAQQL 587 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET +D +R L VEI K LMG R +FI + A+ + + Sbjct: 588 WETTLDPERRMLKAVEIED----AKMASQITELLMGVDVPPRREFIHQHATDAE-LD 639 >gi|26554100|ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2] gi|26454108|dbj|BAC44438.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2] Length = 631 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 236/647 (36%), Positives = 356/647 (55%), Gaps = 29/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y S I++LEGL+PVR RPGMYIG TD++ LHHL E++DNA+DEV+AG + I+++L Sbjct: 2 NSYKESDIKVLEGLDPVRKRPGMYIGSTDQRGLHHLIWEILDNAVDEVMAGVCDTIKMTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +V DNGRGIP HPK ST++ + TTLHAGGKF +S Y++SGGLHGVG SV Sbjct: 62 HRDGSFSVEDNGRGIPTGIHPK-TKMSTVDTVFTTLHAGGKFSDSAYKMSGGLHGVGSSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L VTV R I+ ++ G + N+ GT + F PD IF + Sbjct: 121 VNALSSYLTVTVKRDGKIYESQYVDGGKIKQKSHIIGSTNRTGTTVRFLPDASIFKN-IA 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + Q ++L +K + E + + F G+ ++ N+ Sbjct: 180 FSPSIIFERVQETSFLFKGLKIIF-------ENEYTRKVDTFLAQNGISEFVSFISSNQK 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 IS I+ E+ ++ + E S+ N++ T EGGTHE+G + ALT Sbjct: 233 TISEVIYIEGKEQDIEAEIAFQYNDSNSETF---VSFANSVKTKEGGTHETGFKTALTET 289 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 + YA + + + D V ++SV I E + GQTK KL + +A V+ Sbjct: 290 LNDYARKWKLLKDKEKNFEGSDFREGLVCVISVRIPERLISYEGQTKNKLFTQEAYSVVK 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKLAD 455 N ++ F ++L +N +A ++E E R+ +K RE ++ +K GKL Sbjct: 350 NIVKTKFTYWLEENKKDAKTIIEKAYLSREARIAAKKAREEVKQLKGQKKEKILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C TELF+VEGDSAGGSAK R++ QA+LPL+GK++NV A + + N++I Sbjct: 410 CQSKDKTITELFLVEGDSAGGSAKLGRDKRYQAILPLKGKVINVEKAMLKDLLKNEEIST 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ++G S + D++Y K+IIMTDAD DGAHI LLLTFFY+ M +LIE +++ Sbjct: 470 IISSIGGSIGSDFCLPDVKYSKIIIMTDADTDGAHIRILLLTFFYRYMKELIESGRVYIA 529 Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL++ T+ K Y ++ +++ K EI R+KGLGEM A QL +T M Sbjct: 530 LPPLYKFTNTKNKKEFYVWEDYELEEL-----KKDNPNYEIQRYKGLGEMNADQLWDTTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 D R L++V I T+ ++ LMG + +R ++I + F Sbjct: 585 DPETRQLIQVSIED----AALTERRVSILMGDDSSKRKEWITDNVDF 627 >gi|15790024|ref|NP_279848.1| DNA gyrase subunit B [Halobacterium sp. NRC-1] gi|10580452|gb|AAG19328.1| DNA gyrase subunit B [Halobacterium sp. NRC-1] Length = 611 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 240/627 (38%), Positives = 357/627 (56%), Gaps = 22/627 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD + LHHL EV+DN++DE +AGY + I+V+L +G ++V D+GRGIPV H + Sbjct: 1 MYIGSTDARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEE 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 + ++ +E+ILT LHAGGKFD +Y++SGGLHGVG+SVVNALS+ L V V+R + ++ Sbjct: 61 Y-DRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQ 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F RG P++ L+ + GT I FRPD +IF +D + L + A+L+ V+ Sbjct: 120 FERGEPVTDLQHVGD-SDDSGTLIRFRPDSEIFETT-AYDFSTLENRLRELAFLNSGVEI 177 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + ++ P + F + GG++ +++ E R+ + ++ + E G +VE Sbjct: 178 TLTDER-----GDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGI---SVE 229 Query: 304 WAIA-WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RAISIIS 359 A+ + ++ N I T EGGTH +G + ALTR + YA ++ Sbjct: 230 IAMQASEDVQSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTG 289 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ ++SV +P+F GQTKTKL + + + VE A+ D Y +NP A ++ Sbjct: 290 DDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVV 349 Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +E ++ R +K E RK+A+ LPGKLADC ELF+VEGDSAGGSA Sbjct: 350 RTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSA 409 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQ RN QA+LPL GKILNV ++I + ++ ++ ALG ++ ++LRYE + Sbjct: 410 KQGRNPGFQAILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENI 469 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 I+MTDADVDGAHI +LLLTFFY+ M L+E +++ PPL+RI + A E ++ Sbjct: 470 IMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRE 529 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +I+EE ++ RFKGLGEM QL +T MD R L R+ + Sbjct: 530 RIVEEQCNGNPT--QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVED----AAAADKM 583 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FIQERA + V Sbjct: 584 FSVLMGDAVEPRKQFIQERAGDAEWVD 610 >gi|229824236|ref|ZP_04450305.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271] gi|229786590|gb|EEP22704.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271] Length = 708 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 238/658 (36%), Positives = 355/658 (53%), Gaps = 38/658 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY +I+ILEGLE VR RPGMYIG TD++ LHHL E++DNA+DE ++G+A+ I+V++ Sbjct: 23 NYGDDAIQILEGLEAVRKRPGMYIGSTDQRGLHHLLYEIVDNAVDEALSGFADHIKVTIC 82 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V DNGRG+PV H K T+E++ T LHAGGKF Y+ +GGLHGVG SVV Sbjct: 83 QDGSVKVQDNGRGLPVGLH--ASGKPTIEVVFTVLHAGGKFGQGGYKSAGGLHGVGASVV 140 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS + V V R + +F G +P++ L K + ++K GT + F PD KIFG A Sbjct: 141 NALSTWVQVEVDRDGYTYQMRFENGGVPVTKLIKTKNSNKSKHGTTVHFMPDSKIFG-HA 199 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 ++ + + + A+L + ++ I E F+F GL ++ E + Sbjct: 200 TINSETIAERLRESAFLLKDLTIELIDER-------IDYHEVFHFSQGLIDFITYLNEEK 252 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + E +G +++A + + I S+ N + T GGTHE G++ +T Sbjct: 253 DTLGDIAGFA-GEVEG---FEIDFAFQYNDGYSETILSFANNVRTGGGGTHEVGMKTGMT 308 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA + ++ D+ ++S+ I E +F GQTK KL + A+ Sbjct: 309 KAFNDYARKVGLLKDKDKNLEGSDVREGLTAVISLRIPEEYLQFEGQTKEKLGTPKARPL 368 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGK 452 VEN + + YL +N + +L I+ E R RK R+ R + ++ + + GK Sbjct: 369 VENFVNEKMTAYLNENGNFSQMILRKAIKARETREAARKARDAARSGSKKQAQERAISGK 428 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L A EL++VEGDSAGGSAK RNR QA+LPLRGK++N A + I N++ Sbjct: 429 LTKAQSKDASKNELYLVEGDSAGGSAKLGRNRQYQAILPLRGKVINTEKASMQDILKNEE 488 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ +G + + E + Y KVIIMTDAD DGAHI LLLTFFY+ M L+E + Sbjct: 489 INTMIYTIGAGVGADFDLESVNYNKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKV 548 Query: 573 FLISPPLFRITQG--TK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +L PPLF++++G K YA +E + + K + R+KGLGEM A QL Sbjct: 549 YLAMPPLFKVSKGAGKKQVVEYAWTDEELASKIAKVGK----GYVLQRYKGLGEMNADQL 604 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T M+ R L+RV I+ + + LMG K + R K+I+ SF + T Sbjct: 605 WDTTMNPETRLLIRVTIDDG----ARAERRLTTLMGNKVEPRRKWIERHVSFT--LDT 656 >gi|84497177|ref|ZP_00995999.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649] gi|84382065|gb|EAP97947.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649] Length = 719 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 246/712 (34%), Positives = 370/712 (51%), Gaps = 36/712 (5%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIP-------DSPAFANQSASDN--YDASSIRILE 53 D + D S P + + + +P + + +D+ YDAS+I++LE Sbjct: 14 DSTADAVSDTSPNASAAESAALPAALPTAPEEGALTAPTGSVSAVADDATYDASAIQVLE 73 Query: 54 GLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNG 113 GL+ VR RPGMYIG T E+ LHHL E++DNA+DE +AG+A+ I+V+L GNG + V DNG Sbjct: 74 GLDAVRKRPGMYIGSTGERGLHHLVWEIVDNAVDESLAGHADTIDVTLLGNGGVQVKDNG 133 Query: 114 RGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTV 173 RGIP + + ST+E++LT LHAGGKF Y++SGGLHGVG SVVNALS L V Sbjct: 134 RGIPTGMN-EAYGVSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTRLIAEV 192 Query: 174 ARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233 + ++ +F G L+PLE+ + + T + D + +D + Q Sbjct: 193 RQLGHVWRMEFDHGERLAPLEQVGETADHGSTITYWADD--QIFETVEYDYETIRARFQQ 250 Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEE------------FYFPGGLKTYLQTKLENRS 281 A+L+ + + ++ E + + +PGGL Y+ + ++ Sbjct: 251 YAFLNKGLTINLTDERVQESAADEDESDSVEGNESRKRTISYCYPGGLIDYVTHLVASKK 310 Query: 282 LISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 E + +E A+ W + +Y NT+ T EGGTHE G R ALT Sbjct: 311 SEPVHPDIISIEVEDKARELNLELAMQWTTAYSESVHTYANTVNTHEGGTHEEGFRAALT 370 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + I +A + ++ DD+ ++SV + EP+F GQTKTKL + + + V+ Sbjct: 371 KMINDFARKQNQLKDKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQ 430 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 A+ D F +L ++P E +++ I+ RL RK RE RK + LPGKL DC Sbjct: 431 RAMTDSFGDWLERHPNEGKEIVRKAIQAQTARLAARKAREATRKRVLESGGLPGKLRDCQ 490 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E++IVEGDSAGGSA + RN NQA+LP+RGKILNV A +K NQ++ L+ Sbjct: 491 AKDPAVSEVYIVEGDSAGGSAVRGRNPFNQAILPIRGKILNVERARLDKALANQEVQALI 550 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A G + + RY K++IM DADVDG HI +LLLT ++ M LIE +++L P Sbjct: 551 SAFGTGIGEDFNIDKARYHKIVIMADADVDGMHIRTLLLTLLFRFMKPLIEAGYVYLAQP 610 Query: 578 PLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAM 633 PL+RI +A + + + E + G+ + I R+KGLGEM +L ET M Sbjct: 611 PLYRIKWSNAPHEFAFTDRERDALTAEGQSKGRRMPKDNGIQRYKGLGEMDYQELWETTM 670 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + R LL++ ++ + + LMG + R FIQ A + + Sbjct: 671 DPDHRVLLQITLDD----AAAADEVFSVLMGEDVESRRSFIQRNARDVRFLD 718 >gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111] gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111] Length = 620 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 241/635 (37%), Positives = 364/635 (57%), Gaps = 25/635 (3%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 MRPGMYIG T ++ LHHL E++DN++DE +AG+A I+V ++ + +TVVD+GRGIPV+ Sbjct: 1 MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 K + +E + T LHAGGKF Y++SGGLHGVG SVVNALS +L V V + + Sbjct: 61 IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q++ RG+ ++ LE + GT + F PDP+IF + FD +L K Q A+L+ Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 ++ S +E E +++ GG+ +Y++ EN+ +I E G Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ + + S+ N I T EGGTHE G R ALTR I YA+ + + + Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +D+ ++SV P+F GQTKTKL + + + + F+ +L++NP A Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K++E I S+ R+ ++ RE +K+ + LPGKLADCS N A ELFIVEGDSA Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAE 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK RNR QA+LP+RGKILNV A +KI N++I L A+G + + +RY Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593 +K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ PP++ + G++ Y Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530 Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 EE ++ L+ + G+ K + R+KGLGEM QL ET MD R + RV ++ Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD--- 586 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + + R +FI+ A + ++ Sbjct: 587 -AAEADKIFDMLMGDRVEPRREFIEANAVY-SNLD 619 >gi|330718555|ref|ZP_08313155.1| DNA topoisomerase IV subunit B [Leuconostoc fallax KCTC 3537] Length = 708 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 246/660 (37%), Positives = 367/660 (55%), Gaps = 33/660 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y++ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + G+ + I V Sbjct: 3 KNNEYNSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGFGDEINV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ N +TV D GRG+PV H K T E+ILT LHAGGKF Y SGGLHGVG Sbjct: 63 TIHENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L VT+ R+ + + F G P+ L K + GT +TF+PD IF Sbjct: 121 SVVNALSESLQVTIVREGHKWEEDFVDGGKPVGTLRDLGKTKEHTGTILTFKPDANIFST 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L + + A+L VK + ++ E +++ GL+ ++ E Sbjct: 181 TV-YKYETLAERLRESAFLMSGVKFTLTDER-----VDPIRHEAYHYDKGLEAFVGFLNE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337 ++ I S T + +++G V+ A + + E S+ N + T +GGTHE+G R A Sbjct: 235 DKGTIGSI-MTFEGQQEGII---VDVAAQYNDGYSETLLSFVNNVRTQDGGTHEAGFRSA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA T + ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 291 WTKAFNEYARRTNLLKDKDKNLEGSDVREGLSAVISLRVPEQYLQFEGQTKDKLGTPEAR 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 V+ + + +L++N L+ + E R RK R+ +R + + L Sbjct: 351 GIVDAIVNETLSRFLMENGDFGQNLIRKALRAREAREAARKARDESRTGRSKNAKERLLS 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+ A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N Sbjct: 411 GKLSPAQSKNAAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKN 470 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I L+ A+G + ++ D ++K+IIMTDAD DGAHI +LLLTFFY+ M LIE+ Sbjct: 471 EEISTLIYAIGGGVGADFKVADAAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEEG 530 Query: 571 HLFLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 +++ PPL+R+ G+K +A + + I + G+ E++RFKGLGEM AS Sbjct: 531 KIYIALPPLYRVKFGSKKHDDQFAWTNDELETITSQT----TGRYELTRFKGLGEMNASL 586 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 L ET MD RTL+RV+I+ + + + LMG K + R +I+ SF +D+ G+ Sbjct: 587 LWETTMDPESRTLIRVKIDDGV----LAEKRVTTLMGDKVEPRRNWIEANVSFTLDEAGS 642 >gi|168067741|ref|XP_001785766.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662596|gb|EDQ49430.1| predicted protein [Physcomitrella patens subsp. patens] Length = 642 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 238/652 (36%), Positives = 357/652 (54%), Gaps = 28/652 (4%) Query: 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTV 109 ++LEGLE VR RPGMYIG T K LHHL EV+DNA+DE AG+A+ +++ + +G +++ Sbjct: 2 QVLEGLEAVRKRPGMYIGSTGAKGLHHLVYEVLDNAIDEAQAGFASTVDIVMHTDGSVSI 61 Query: 110 VDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSD 167 DNGRGIP + HP KS LE +LT LHAGGKF Y +SGGLHGVGISVVNALS+ Sbjct: 62 SDNGRGIPTDVHP-VTGKSALETVLTVLHAGGKFGGDNSGYSVSGGLHGVGISVVNALSE 120 Query: 168 ELHVTVARQNTIFSQKFSRGIPLSP---LEKKEKVRNKRGTRITFRPDPK-----IFGDK 219 + VTV R + Q F G +S + + GT + F PD + +F Sbjct: 121 RVDVTVWRNGHEYKQSFEFGKSVSHLSGSRLPRDQKGRTGTLVKFLPDKQGKSFLMFTST 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + T+ A+L+ +V D EK ++F GGL Y+ + Sbjct: 181 TEFDYSTISGRTRELAFLNPQVTIYLKQDHANPEKI---RSNTYHFSGGLSEYVLWLNND 237 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + I + ++ +++W I Y N+I T +GGTH G++ A+T Sbjct: 238 KERLHEPISIHRKKEGIIIDVSLQWCA--DSYTDTIIGYANSIRTSDGGTHLDGIKAAVT 295 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + + ++ ++ D ++SV + PEF GQTKT+L + + +R V+ Sbjct: 296 RTLNTLGRKAKILKEKDENLSGDHAREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRLVD 355 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 A+++ YL Q+P +L ++ ++ + V RK ++ LPGKL+DC Sbjct: 356 QAVQELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDC 415 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ I NQ+I +L Sbjct: 416 SCTDPKNSEIFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNL 475 Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + +D LRY K+II+TDADVDGAHI +LLLTFF++ L E +++ Sbjct: 476 ILALGLGVKGEEFSKDLLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFESGCIYVG 535 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G ++ Y +E + +L+ F + I RFKGLGEM+ QL ET +D Sbjct: 536 VPPLYKVERGKQAHYCFNEADLKNLLKTFPSN--ASYNIQRFKGLGEMMPQQLWETTLDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 +R L + + + + LMG K + R + IQ AS ++++ Sbjct: 594 TQRMLKLLTLED----AAEASMMFSTLMGDKVEPRKELIQNNASRMKLENLD 641 >gi|291525298|emb|CBK90885.1| DNA topoisomerase IV subunit B [Eubacterium rectale DSM 17629] Length = 640 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD SI ILEGLE VR RPGMYIG K L+HL E++DN++DE +AG + I Sbjct: 2 AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ NG TV DNGRGIPV H K S ++ +TLHAGGKFDNS Y+ SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213 SVVNALS + V ++R I ++ +G+P+ LE K + GTRI F PDP Sbjct: 120 SSVVNALSTYMDVEISRDGFIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTRINFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + + AYL+ ++ + + A ++ ++ P G+ ++ Sbjct: 179 EIFEK-TRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIIGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + +N + ++ E + VE A + E + I +CN I EGG H + Sbjct: 233 KDLNKNIEKLH-DVIYFTGESENI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + A T I YA + + D+ ++SV +P F GQTKTKL + Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA R D Y +N ++ + ++ R K + Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK ARNR QA++P+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT F++ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528 Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ I + Y +D+ K +K GK + R+KGLGEM A Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T ++ R L R+EI + D + LMG+ R +FI E A + + Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639 >gi|91762418|ref|ZP_01264383.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1002] gi|91718220|gb|EAS84870.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1002] Length = 685 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 268/697 (38%), Positives = 386/697 (55%), Gaps = 64/697 (9%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 KNNSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD+ +Y++SGGLHGV Sbjct: 62 DVKINSDGTITVRDDGRGIPVDMH-KGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L + + R + +F G +PL+ K + GT+ITF P +IF Sbjct: 121 GVSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSKE-TGTQITFLPSKEIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F + ++K + A+L+ +K + + EK + F F GG+ ++ Sbjct: 180 S-IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIV-----FKFDGGVLEFVDFLD 233 Query: 278 ENRS--------LISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGG 328 E R + + + +K +++W ++ +I Y N I +GG Sbjct: 234 EKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWNASY---GEDIYPYTNNIYQKDGG 290 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH G R ALTR I KYA K ++I DD+ ++S I +P+F+ QTK K Sbjct: 291 THLLGFRSALTRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDK 350 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIR 445 LVS + + VE+ + + + QNP + +L V++ + R RK RE RK A+ Sbjct: 351 LVSSEVRMIVESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALE 410 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA----- 500 LPGKLADC GTELFIVEGDSAGGSAKQ RNRSNQAVLPLRGKILN Sbjct: 411 LSGLPGKLADCQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIV 470 Query: 501 -------------SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADV 546 + K+ ++ +++ L+ ALG + + + +DLRY K+IIMTDADV Sbjct: 471 LKKNSNRDGSEHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADV 530 Query: 547 DGAHIASLLLTFF-YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI----- 600 DG+HI +LLLTFF + LIE H++L PPLF+I +GTK +Y DE+ + Sbjct: 531 DGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNN 590 Query: 601 --LEEFKK----------HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 L++ KK K ++ I RFKGLGEM +L T +D R LL+V+ +KD Sbjct: 591 KELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYSKD 650 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + +D I+ LMG R FI A + ++ Sbjct: 651 IKKDQD---LIHTLMGNDVALRKDFIVSNAINVQNLD 684 >gi|116618459|ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097306|gb|ABJ62457.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 687 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 243/658 (36%), Positives = 361/658 (54%), Gaps = 33/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY N I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+P+ H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HDNNAITVQDFGRGMPIGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R+ + ++F + G P+ L K + GT +TF+PD IF Sbjct: 123 VNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSATV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + ++L VK + ++ EE+++ GL+ ++ E++ Sbjct: 183 -YKFDILAERLRESSFLMSGVKFTLTDER-----VDPVRVEEYHYEKGLEAFVGFLNEDK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I T + E++ V+ A + + E S+ N + T +GGTHE G R A T Sbjct: 237 ETIGPV-MTFEGEQESI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA + ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V++ + + +L++N L+ + E R R+ R+ +R + + GK Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKNADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + ++ ED + K+IIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGTDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532 Query: 573 FLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ + + +A + LE + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYSSKKIEDQFAWTNDE----LESITSQSDARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 ET MD RTL+RV+I+ + + + LMG K D R ++I+ F +D+ G+ Sbjct: 589 ETTMDPESRTLIRVKIDDAV----LAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGS 642 >gi|238924637|ref|YP_002938153.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC 33656] gi|238876312|gb|ACR76019.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC 33656] Length = 640 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 240/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD SI ILEGLE VR RPGMYIG K L+HL E++DN++DE +AG + I Sbjct: 2 AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ NG TV DNGRGIPV H K S ++ +TLHAGGKFDNS Y+ SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213 SVVNALS + V ++R I ++ +G+P+ LE K + GT+I F PDP Sbjct: 120 SSVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTKINFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + + AYL+ ++ + + A ++ ++ P G+ ++ Sbjct: 179 EIFEK-TRFREEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIVGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + +N + ++ E + VE A + E + I +CN I EGG H + Sbjct: 233 KDLDKNIEKLH-DVIYFTGESENI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + A T I YA + + D+ ++SV +P F GQTKTKL + Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA R D Y +N ++ + ++ R K + Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK ARNR QA++P+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT F++ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528 Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ I + Y +D+ K +K GK + R+KGLGEM A Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T ++ R L R+EI + D + LMG+ R +FI E A + + Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639 >gi|291529243|emb|CBK94829.1| DNA topoisomerase IV subunit B [Eubacterium rectale M104/1] Length = 640 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 241/660 (36%), Positives = 345/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD SI ILEGLE VR RPGMYIG K L+HL E++DN++DE +AG + I Sbjct: 2 AKKQTYDEKSIAILEGLEAVRKRPGMYIGSVTTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ NG TV DNGRGIPV H K S ++ +TLHAGGKFDNS Y+ SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK--GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDP 213 SVVNALS + V ++R I ++ +G+P+ LE K + GTRI F PDP Sbjct: 120 SSVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTKK-TGTRINFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + + AYL+ ++ + + A ++ ++ P G+ ++ Sbjct: 179 EIFEK-TRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIE-----YHEPEGIVGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHES 332 + +N + ++ E + VE A + E + I +CN I EGG H + Sbjct: 233 KDLDKNIEKLH-DVIYFTGESEDI---KVEVAFQYTSEFHENILGFCNNIYNSEGGAHIT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + A T I YA + + D+ ++SV +P F GQTKTKL + Sbjct: 289 GFKTAFTGIINSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA R D Y +N ++ + ++ R K + Sbjct: 349 DANRATAKVTNDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK ARNR QA++P+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT F++ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPEL 528 Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ I + Y +D+ K +K GK + R+KGLGEM A Sbjct: 529 ILEGHVYVAMPPLYKAIPSKGEEKYLYDDAELDKY----RKTHTGKFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL +T ++ R L R+EI + D + LMG+ R +FI E A + + Sbjct: 585 DQLWDTTLNPATRMLKRIEIEDG----RLANDVTSLLMGSDVPPRKEFIYEHAHDAE-LD 639 >gi|98990338|gb|ABF60237.1| DNA gyrase subunit B [Entomoplasma freundtii] Length = 608 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 247/624 (39%), Positives = 358/624 (57%), Gaps = 22/624 (3%) Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T + LHHL E++DN++DE +AGYAN I V++ +G + V DNGRGIPV Sbjct: 1 GSTSKAGLHHLVWEILDNSIDEAMAGYANRIVVTITKDGEVVVEDNGRGIPVGVQ-HDTG 59 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 +S LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS+ + V V R+ ++ Q FS Sbjct: 60 RSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSEYVDVLVKREGKVYHQVFSH 119 Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 G + N+ GT + F+PDP IF + FD + + AYL+ ++ Sbjct: 120 GGTKQSALEVIDTTNETGTVVRFKPDPTIFQETVIFDYITIKNKVKQLAYLNKGIEITLI 179 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + I + ++FP G+ Y++ + N+ I+ IF + G VE A+ Sbjct: 180 DYR-------IDKTITYHFPNGILDYVREENANKQPINPNIFYVDGKYDGV---EVEVAL 229 Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL---TQNKRAISIISDDL 362 + + + ++ N I T EGGTHE G+R AL R I +YAE K A DD+ Sbjct: 230 QYNADYNDNLITFVNNINTHEGGTHEDGIRQALVRTINRYAEKVAKNGAKSAQKFGWDDI 289 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422 +GILS+ +P F GQTKTKL +L+A++ V+N + D F+ +L+++P++A +L+ Sbjct: 290 KEGMIGILSIRHSDPSFEGQTKTKLSNLNAKKAVDNVVGDAFEEFLMKSPLDAKAILDKN 349 Query: 423 IERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 + RL ++ RE RK A+ LPGKLADC EL++VEGDSAGGSAK Sbjct: 350 STAQKARLAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTG 409 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 RNR QA+LPLRGK+LNV + +N +I +V A+GC + LRY K++IM Sbjct: 410 RNRFFQAILPLRGKVLNVEKVQEARAFSNNEIKSIVTAVGCGIKEDVNVCKLRYNKIVIM 469 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TDADVDGAHI +LLLTFFY+ M DL+ H+++ PPL++I G K YA+ ++ + Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMKDLVRHGHIYIAQPPLYKIEAGKKVAYAYSDQQLEDFK 529 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + + I R+KGLGEM QL ET M+ RT+L+V + + + Sbjct: 530 N--GDYKNLRYTIQRYKGLGEMDPLQLWETTMNPEFRTMLQVTLED----AAIANEVFSN 583 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQE ASF++++ Sbjct: 584 LMGEDPELRRDFIQENASFVENID 607 >gi|257067232|ref|YP_003153487.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810] gi|256558050|gb|ACU83897.1| DNA gyrase subunit B [Brachybacterium faecium DSM 4810] Length = 711 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 254/718 (35%), Positives = 377/718 (52%), Gaps = 41/718 (5%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSA--SDNYDASSIRILEGLEPV 58 M+D + P+S P ++A ++YDAS I +LEGLE V Sbjct: 1 MSDSDRPMPDQDVPESTPDPSPGAADAAAPAPLTAGERAAHAPEHYDASDITVLEGLEAV 60 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R RPGMYIG T E+ LHH+ EV+DN++DE +AG+ + IEV+L +G + VVD+ RGIPV Sbjct: 61 RKRPGMYIGSTGERGLHHMVQEVVDNSVDEAMAGHGDTIEVTLLADGGVRVVDHARGIPV 120 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 HP K +E++LT LHAGGKF Y +SGGLHGVG SVVNALS + V + R Sbjct: 121 AMHP-TEGKPAVELVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSIRMEVEIRRDGH 179 Query: 179 IFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 ++ Q +SRG+PL+PL+K E+ T ITF D +IF + +D L K Q A+L+ Sbjct: 180 VWRQAYSRGVPLAPLDKGEETEETG-TTITFWADDEIFDETV-YDFETLRKRFQQMAFLN 237 Query: 239 GRVKTCWSCDKEIAE---------------------KYGIPEKEEFYFPGGLKTYLQTKL 277 ++ + ++ K P + + GL+ +++ Sbjct: 238 KGLRITLTDERAPEVEETEDDHLVDVELEAEGAETGKDAGPRTVSYLYERGLQDFVEFIN 297 Query: 278 ENR--SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + +I EI + ++E + +VE A+ W + +Y NTI T EGGTHE G Sbjct: 298 TAKRAEVIHPEIISFESE-DTDAKISVEVAMQWTGAYSESVHTYANTINTHEGGTHEEGF 356 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +LT + +Y ++ ++ +D+ ++SV + EP+F GQTKTKL + A Sbjct: 357 RSSLTSIVNRYGRAQGLLKEKDANLTGEDIREGLTAVVSVKLGEPQFEGQTKTKLGNTIA 416 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 + + + D + +P EA ++ + R RK R+ R+ + + +PG Sbjct: 417 RTFMVKVMTDQLQDWFDSHPAEAKSIVMKGQAAAAAREAARKARDATRRKSPLETGGMPG 476 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS E+FIVEGDSAGGSA R+ QA+LP+RGKILNV A ++ +NQ Sbjct: 477 KLRDCSSRNPAECEIFIVEGDSAGGSAVSGRDPRTQAILPIRGKILNVEKARLDRALDNQ 536 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ A G + LRY K+++M DADVDG HI +LLLT ++ M LIE H Sbjct: 537 EVRSLITAFGTGIGEDFDATKLRYHKIVLMADADVDGQHIVTLLLTLLFRYMRPLIELGH 596 Query: 572 LFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQ 627 +F+ PPLFR+ Y +E + + LE + G+ I R+KGLGEM + Sbjct: 597 VFIAMPPLFRLKWSNAPHEYVFSDEERDERLEAGRAAGRRIPRDNGIQRYKGLGEMDWKE 656 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+ T MD N RTL +V +++ D + LMG + R +FIQE A + + Sbjct: 657 LQSTTMDTNTRTLKQVTVDE----AADADTIFSVLMGDDVESRRRFIQENAKDVRFLD 710 >gi|152963978|ref|YP_001359762.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216] gi|151358495|gb|ABS01498.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216] Length = 686 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 261/702 (37%), Positives = 364/702 (51%), Gaps = 34/702 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D P+ S P Y A +I +LEGLE VR Sbjct: 1 MPDQETPGPEDTSPEDAPSLADAVAPDGTPRP----------EYGADAITVLEGLEAVRK 50 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL EV+DN++DE +AGY + I V++ +G L VDNGRGIPV+ Sbjct: 51 RPGMYIGSTGERGLHHLVYEVVDNSVDEALAGYCDTIAVTMLADGGLRCVDNGRGIPVDI 110 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P +S LE++LT LHAGGKF Y +SGGLHGVGISVVNALS + V V RQ ++ Sbjct: 111 MP-GEGRSALEVVLTVLHAGGKFGGGGYSVSGGLHGVGISVVNALSRRVDVEVRRQGHVW 169 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q F G+P++PLEK E+ GT ITF P P+ F FD L Q +L+ Sbjct: 170 RQSFEGGVPVAPLEKGEETGE-TGTSITFWPSPETFETTV-FDFETLRTRFQQTCFLNKG 227 Query: 241 VKTCWSCDKEIAEKYGIP-------EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 + S ++ + ++ + + GGL Y++ + E Sbjct: 228 LTISLSDERVVEDEVEDESTDAKPLRDVTYRYDGGLVDYVKHVNSLKKNEPLHDSIISLE 287 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ- 350 + ++E A+ W + ++ N I T EGGTHE+G R ALT +++YA + Sbjct: 288 AEDTEQGISLEVAMQWTTAYSETVFTFANAINTTEGGTHETGFRTALTSLVQEYARAAKP 347 Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 K ++ D+ I+SV + EP+F GQTKTKL + A+ V +R+ H+ Sbjct: 348 ALLKENDTLEGSDIREGLTAIISVKLSEPQFEGQTKTKLGNTSARTYVNAQVREHLGHWF 407 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468 NP EA ++ + S R RK RE +RK+ + + LPGKL DC N E+FI Sbjct: 408 ASNPKEAYQIAKKAHSASVARQAARKAREASRKSLLERNSLPGKLKDCQSNNPAECEVFI 467 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSAGGSA + R+ QA+LP+RGKILNV A ++ NQ++ L+ A G ++ Sbjct: 468 VEGDSAGGSATRGRDPRTQAILPIRGKILNVEKARLDRALGNQEVQALITAFGTGIGEEF 527 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ--GT 586 E LRY K+IIM DADVDG HI +LLLT ++ M L+E H++L PPL+RI G Sbjct: 528 NLEKLRYHKIIIMADADVDGQHIRTLLLTLLFRYMSPLVENGHVYLAQPPLYRIKWMGGA 587 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKI---EISRFKGLGEMLASQLKETAMDANKRTLLRV 643 +A+ + + ++E GK + R+KGLGEM +L ET MD RTLL+V Sbjct: 588 AHEFAYSDRERDALMEAGLAAGKKLPKEGKTQRYKGLGEMNWDELSETTMDRAHRTLLQV 647 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FIQ A + + Sbjct: 648 TLED----AAAADAVFSVLMGEDVESRRSFIQRNARDVRFLD 685 >gi|283768327|ref|ZP_06341239.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219] gi|283104719|gb|EFC06091.1| DNA topoisomerase IV, B subunit [Bulleidia extructa W1219] Length = 640 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 233/649 (35%), Positives = 349/649 (53%), Gaps = 30/649 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+ SI+ILEGLE VR RPGMYIG D LHHL E++DNA+DE + G+ I+++ Sbjct: 2 ANKYNDDSIQILEGLEAVRKRPGMYIGAADSHGLHHLIWEIVDNAIDEALNGFGKEIKIT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGI 159 L+ +G LTV D+GRGIP H T+++I T LHAGGKF + Y+ +GGLHGVG Sbjct: 62 LEKDGSLTVEDHGRGIPTGRH--VSGMPTIQVIFTILHAGGKFTSQGGYKTAGGLHGVGA 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL-EKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS+ L V F G + EK K GT + F+PDP IF Sbjct: 120 SVVNALSEWLVVESFHDGEHVRMSFKNGGKEASKLEKLGKTTK-TGTIVRFKPDPAIFHV 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F ++ + + +A+L + +E E E F++ GL +L+ E Sbjct: 179 TH-FHFEQVAERAREEAFLLSGISMVVEDKREGKEAK-----EVFHYENGLVAFLEYLHE 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 +R +I + + ++ + SY N + T +GG+HE G + A Sbjct: 233 DRHVIMEPVKFEGEYQGVEVACIFQYTD---DYQENTYSYANLVHTGDGGSHEVGFKGAF 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394 T+ + +YA + ++ D+ I+SV + E EF Q K+KL + A+ Sbjct: 290 TKAMNEYARKYGLLKAKDKNLDGLDVREGLTTIISVRVPEDYLEFQAQVKSKLTTPLAKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPG 451 VEN + + +L ++ EA L++ + + R RK +E RK L G Sbjct: 350 AVENVVLEKLSFWLEEHRNEADDLIKKMQRAQQAREAARKAKENVRKGKNLGKGEKVLSG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA + ELF+VEGDSAGGSAKQ R+ QA+LPLRGK+LN +I N+ Sbjct: 410 KLAPAQTKNSKIKELFLVEGDSAGGSAKQGRDSHYQAILPLRGKVLNTEHVSMTEIEKNE 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ L+ LG ++ +D+ Y KVIIMTDAD DG+HI LLLTFF++ M L+EQ Sbjct: 470 ELNTLIYTLGAGVGKEFIIDDVNYGKVIIMTDADDDGSHIQILLLTFFFRYMRPLVEQGM 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+++++G + Y + +E +++ + GK+EI R+KGLGEM A+QL ET Sbjct: 530 VYIALPPLYKVSKGKEVQYCYSDEELEELKAKL-----GKVEIQRYKGLGEMNATQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 MD + RTL++V I+ L + ++ LMG K + R +I+E F Sbjct: 585 TMDPDHRTLIQVNIDD----LLIAEKRVSMLMGNKPESRRHWIEENIQF 629 >gi|257051019|sp|Q9SS38|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor Length = 661 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 239/671 (35%), Positives = 374/671 (55%), Gaps = 26/671 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + S S +Y + I++LEGL+PVR RPGMYIG T + LHHL E++DNA+DE Sbjct: 2 SSTMESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNS 146 AG+A+ I+V L + +++ DNGRGIP + HP KS+LE +LT LHA +S Sbjct: 62 AQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSS 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKR 203 Y +SGGLHGVG+SVVNALS+ L V V R F QK+SRG P++ L + R + Sbjct: 121 GYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQ 180 Query: 204 GTRITFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT I F PD + +F FD + + A+L+ +V + + E+ Sbjct: 181 GTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---Y 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 E+++ GGL Y+ ++ + + K T +++W + + Y N Sbjct: 238 SEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYAN 295 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE 378 +I T +GGTH G++ +LTR + A+ + ++ IS+ + + I+SV + PE Sbjct: 296 SIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPE 355 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQRE 437 F GQTKT+L + + ++ V+ ++++ YL +P ++ + +R + Sbjct: 356 FEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRAREL 415 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 V K+ ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKIL Sbjct: 416 VRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 475 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 N+ + N++I +L+ LG + + +E+LRY K+II+TDADVDGAHI +LLL Sbjct: 476 NIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLL 535 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 TFF++ L + +++ PPLF++ +G ++ Y +D+ +KI F G I R Sbjct: 536 TFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFP--GNASYNIQR 593 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 FKGLGEM+ +QL ET M+ + R L ++ ++ +T + LMG + D R + I+ Sbjct: 594 FKGLGEMMPAQLWETTMNPDTRILKQLVVDD----AAETNMVFSSLMGARVDVRKELIKS 649 Query: 677 RAS--FIDDVG 685 A+ ++++ Sbjct: 650 AATRMNLENLD 660 >gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana] Length = 657 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 239/667 (35%), Positives = 374/667 (56%), Gaps = 26/667 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + S S +Y + I++LEGL+PVR RPGMYIG T + LHHL E++DNA+DE AG Sbjct: 2 ESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNSTYEI 150 +A+ I+V L + +++ DNGRGIP + HP KS+LE +LT LHA +S Y + Sbjct: 62 FASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSSGYSV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRI 207 SGGLHGVG+SVVNALS+ L V V R F QK+SRG P++ L + R +GT I Sbjct: 121 SGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCI 180 Query: 208 TFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 F PD + +F FD + + A+L+ +V + + E+ E++ Sbjct: 181 RFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---YSEYF 237 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324 + GGL Y+ ++ + + K T +++W + + Y N+I T Sbjct: 238 YAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYANSIRT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH G++ +LTR + A+ + ++ IS+ + + I+SV + PEF GQ Sbjct: 296 IDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRK 441 TKT+L + + ++ V+ ++++ YL +P ++ + +R + V K Sbjct: 356 TKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSK 415 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 416 SVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIER 475 Query: 502 AGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + N++I +L+ LG + + +E+LRY K+II+TDADVDGAHI +LLLTFF+ Sbjct: 476 KDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFF 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + L + +++ PPLF++ +G ++ Y +D+ +KI F G I RFKGL Sbjct: 536 RYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFP--GNASYNIQRFKGL 593 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS- 679 GEM+ +QL ET M+ + R L ++ ++ +T + LMG + D R + I+ A+ Sbjct: 594 GEMMPAQLWETTMNPDTRILKQLVVDD----AAETNMVFSSLMGARVDVRKELIKSAATR 649 Query: 680 -FIDDVG 685 ++++ Sbjct: 650 MNLENLD 656 >gi|313904177|ref|ZP_07837556.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6] gi|313470979|gb|EFR66302.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6] Length = 646 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 244/662 (36%), Positives = 337/662 (50%), Gaps = 33/662 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + D+YDASSI++LEGLE VRMRPGMYIG T K L+HL E++DN++DE +AGY I Sbjct: 2 AKKDSYDASSIQVLEGLEAVRMRPGMYIGSTGRKGLNHLIYEIVDNSVDEHLAGYCTKIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G TV D+GRGIPV H K ++LTTLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 VVLEADGSCTVTDDGRGIPVNMHEK--GMPAERVVLTTLHAGGKFDNDAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-----KVRNKRGTRITFRPDP 213 SVVNALS + V ++R I +F +G+P+ L + GT+I F PD Sbjct: 120 SSVVNALSVFMDVQISRDGYIHHDRFEKGVPVMELAEDGLLPKIGKTKNTGTKINFMPDG 179 Query: 214 KIFGDKAG--FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 +IF F A L YL+ + + + + E G +K Sbjct: 180 EIFETYEKSGFSADDLKSRLHETCYLNPNLVIEFVDLRPGKNNEEVTYSEPEGIIGFVKE 239 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTH 330 + + K E G VE A + + + +CN I EGGTH Sbjct: 240 INA-----KEEKLHDPVFFKGEADGIM---VEVAFQYVKDFQENVLGFCNNIYNSEGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G + A T + YA + + D+ I+S+ +P F GQTKTKL Sbjct: 292 ITGFKQAFTTIMNNYAREIGVLKDKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLD 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 + DA + D Y +N +LE ++ R K + Sbjct: 352 NPDAAKAAGKVTGDEVVRYFDRNLPVLKTVLECAERSAKIRKTEEKAKTNMLTKQKYSFD 411 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 GKLA+C A E+FIVEGDSAGGSAK ARNR QA+ P+RGKILNV A +K+ Sbjct: 412 ANGKLANCESRDASKCEIFIVEGDSAGGSAKMARNRMYQAIFPIRGKILNVEKATIDKVL 471 Query: 509 NNQQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I ++ A GC + + LRY+K+IIM DADVDGAHIA+LLLT FY+ M Sbjct: 472 ANAEIKSMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHIATLLLTLFYRFMP 531 Query: 565 DLIEQKHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +LI Q H+++ PPL++ + Y +D++ ++ KKH K + R+KGLGEM Sbjct: 532 ELIFQGHVYIAMPPLYKTQPSKGEGEYLYDDKALERYR---KKHAGEKFVLQRYKGLGEM 588 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 QL +T +D +KR + RVEI + + T+ LMG R FI A+ + Sbjct: 589 DPQQLWDTTLDPDKRKMRRVEIEDARMASEMTE----ILMGNDVPPRKAFIYNHAADAE- 643 Query: 684 VG 685 + Sbjct: 644 LD 645 >gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp. lyrata] gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp. lyrata] Length = 657 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 238/667 (35%), Positives = 372/667 (55%), Gaps = 26/667 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 + S S +Y + I++LEGL+PVR RPGMYIG T + LHHL E++DNA+DE AG Sbjct: 2 ESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA--GGKFDNSTYEI 150 +A+ I+V L + +++ DNGRGIP + HP KS LE +LT LHA +S Y + Sbjct: 62 FASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSALETVLTVLHAGGKFGGKSSGYSV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKRGTRI 207 SGGLHGVG+SVVNALS+ L V V R F QK+SRG P++ L + R +GT I Sbjct: 121 SGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCI 180 Query: 208 TFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 F PD + +F FD + + A+L+ +V + + E+ E++ Sbjct: 181 RFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDL---YSEYF 237 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILT 324 + GGL Y+ ++ + + K T +++W + + Y N+I T Sbjct: 238 YAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYANSIRT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH G++ +LTR + A+ + ++ IS+ + + I+SV + PEF GQ Sbjct: 296 IDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRK 441 TKT+L + + ++ V+ ++++ YL +P ++ + +R + V K Sbjct: 356 TKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSK 415 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + ++ LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ Sbjct: 416 SVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIER 475 Query: 502 AGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + N++I +L+ LG + + +E+LRY K+II+TDADVDGAHI +LLLTFF+ Sbjct: 476 KDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFF 535 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + L + +++ PPLF++ +G ++ Y +D+ +KI F + I RFKGL Sbjct: 536 RYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPAN--ASYNIQRFKGL 593 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS- 679 GEM+ +QL ET M+ + R L ++ + +T + LMG + D R + I+ A+ Sbjct: 594 GEMMPAQLWETTMNPDTRILKQLVVED----AAETNMVFSSLMGARVDVRKELIKSAATR 649 Query: 680 -FIDDVG 685 ++++ Sbjct: 650 MNLENLD 656 >gi|240146989|ref|ZP_04745590.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|257200860|gb|EEU99144.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] Length = 640 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 242/656 (36%), Positives = 342/656 (52%), Gaps = 34/656 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD SSI +LEGLE VR RPGMYIG K L+HL E++DNA+DE +AG + I Sbjct: 2 AKTGGYDESSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNAVDEHLAGACDTIC 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G TV DNGRG+PV H K S I+ TTLHAGGKFD+S Y+ SGGLHGVG Sbjct: 62 VTLEADGSCTVEDNGRGVPVGMHAK--GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDP 213 SVVNALS + V ++R I + RGIP+ LE K + GT++ F PDP Sbjct: 120 SSVVNALSTHMDVWISRDGYIHHDGYERGIPVVELENGLLPTIGKTKK-TGTKVNFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + AYL+ + + + E ++ G+ ++ Sbjct: 179 EIFEK-TRFKEDEVKSRMHETAYLNPALTIIYEDKR-----GPEVEHIVYHEEEGIIGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + ++ ++ K E+ G TVE A + E I +CN I EGGTH + Sbjct: 233 KDLNKKNEVLH-DVVYFKGEQDGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHIT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T I YA ++ + D+ I+S+ +P F GQTKTKL + Sbjct: 289 GFKTVFTTVINSYARELGILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA R D Y +N ++ + ++ R + + Sbjct: 349 DAARVTAKVTGDEIQLYFDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASICEIFIVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H+++ PPL++ I + Y +D+ LE ++++ K + R+KGLGEM A Sbjct: 529 IYEGHVYVAMPPLYKAIPSKGEEEYLYDDA----ALERYRRNHKSNFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 QL ET ++ R L R+EI + D LMG R FI E A Sbjct: 585 EQLWETTLNPETRILKRIEIEDG----RMASDITELLMGNDVPPRKMFIYEHAKDA 636 >gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana] Length = 760 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 248/720 (34%), Positives = 389/720 (54%), Gaps = 57/720 (7%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 F SQ ++ S + A + S Y + I++LEGL+PVR RPGMYIG Sbjct: 54 FQLTSVLSQRLIQRNAISSRFLSTEASQETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGS 113 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T + LHHL E++DNA+DE AGYA+ ++V L +G ++VVDNGRGIP + HP KS Sbjct: 114 TGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHP-ATKKS 172 Query: 129 TLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 +LE +LT LHAGGKF ++ Y +SGGLHGVG+SVVNALS+ L V+V R Q +SR Sbjct: 173 SLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQNYSR 232 Query: 187 GIPLSPLEKKE---KVRNKRGTRITFRPDPK----------------------------- 214 G P++ L + + + +GT I F PD + Sbjct: 233 GKPITTLTCRVLPLESKGTKGTSIRFWPDKEGFACFPLLTTLPKPKLDLMINFPLWNELF 292 Query: 215 -IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +F FD + + A+L+ +V + + EK + E+ F GGL Y+ Sbjct: 293 SVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKT---QYSEYSFAGGLTEYV 349 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE--ENPEITSYCNTILTDEGGTHE 331 +++ I + ++ + TV+ A+ WC + + Y N+I T +GGTH Sbjct: 350 SWLNTDKNPIHDVLGF----RREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHI 405 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G++ +LTR + A+ ++ ++ IS+ + + I+SV + PEF GQTKT+L + Sbjct: 406 EGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGN 465 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLR 448 + ++ V+ ++++ +L +P ++ + +R + V K+ ++ Sbjct: 466 PEVRKIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSS 525 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ + Sbjct: 526 LPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMY 585 Query: 509 NNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 N++I +L+ LG + +++E+LRY K+II+TDADVDGAHI +LLLTFF++ L Sbjct: 586 KNEEIQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALF 645 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 + +++ PPLF++ +G + Y +D+ +KI F + I RFKGLGEM+ Q Sbjct: 646 DAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPAN--ASYNIQRFKGLGEMMPEQ 703 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 L ET M+ R L ++ ++ + + + + LMG + D R + I+ A+ + + Sbjct: 704 LWETTMNPETRILKQLVVDD----IAEANMTFSSLMGARVDVRKELIKNAATRINLQRLD 759 >gi|227431865|ref|ZP_03913889.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352407|gb|EEJ42609.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 687 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 242/658 (36%), Positives = 361/658 (54%), Gaps = 33/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY N I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGNEIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+P+ H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HDNNAITVQDFGRGMPIGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R+ + ++F + G P+ L K + GT +TF+PD IF Sbjct: 123 VNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSATV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + ++L VK + ++ EE+++ GL+ ++ E++ Sbjct: 183 -YKFDILAERLRESSFLMSGVKFTLTDER-----VDPVRVEEYHYEKGLEAFVGFLNEDK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I T + E++ V+ A + + E S+ N + T +GGTHE G R A T Sbjct: 237 ETIGPV-MTFEGEQESI---VVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA + ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V++ + + +L++N L+ + E R R+ R+ +R + + GK Sbjct: 353 VDSVVNETLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKNADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + ++ ED + K+IIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGTDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRV 532 Query: 573 FLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ + + +A + LE + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYSSKKIEDQFAWTNDE----LESITSQSDARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 ET MD RTL+R++I+ + + + LMG K D R ++I+ F +D+ G+ Sbjct: 589 ETTMDPESRTLIRIKIDDAV----LAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGS 642 >gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens] Length = 588 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 245/604 (40%), Positives = 355/604 (58%), Gaps = 20/604 (3%) Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T K LHHL E++DN++DE +AGY I + ++ + +TV DNGRGIPV K Sbjct: 1 GSTSSKGLHHLVWEIVDNSIDEALAGYCTDINIEIEKDNSITVKDNGRGIPVGIQEKM-G 59 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 + +E+I+T LHAGGKFD S Y++SGGLHGVG SVVNALS L VTV R I Q + R Sbjct: 60 RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYER 119 Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 G+P++ LE +K GT F PDP+IF + +D L + A+L+ V Sbjct: 120 GVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIE 178 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 +E E+ +++ GG+K+Y++ ++ +I E + EK G TVE A+ Sbjct: 179 DKREGQERKNE-----YHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGI---TVEVAL 230 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363 + + I S+ N I T EGGTHE+G + LTR I YA + ++ DD+ Sbjct: 231 QYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVR 290 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 I+S+ +P+F GQTKTKL + +A+ + + +L++NP A K++E + Sbjct: 291 EGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGL 350 Query: 424 ERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 + R+ +K RK+A+ LPGKLADCS +EL+IVEGDSAGGSAKQ R Sbjct: 351 MAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGR 410 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 +R QA+LPLRGKILNV A +KI +N ++ ++ ALG + E RY KV+IMT Sbjct: 411 DRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIMT 470 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDGAHI +LLLTFFY+ M ++IE ++++ PPL+++ QG + YA++++ ++L+ Sbjct: 471 DADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQLDELLK 530 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 E + K + R+KGLGEM A+QL ET MD RTLL+V + + D ++ L Sbjct: 531 ELPQSPKPG--LQRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAM----DADETFEML 584 Query: 663 MGTK 666 MG K Sbjct: 585 MGDK 588 >gi|311897312|dbj|BAJ29720.1| putative DNA gyrase subunit B [Kitasatospora setae KM-6054] Length = 663 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 247/671 (36%), Positives = 371/671 (55%), Gaps = 19/671 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 SG +P ++Q A YDAS+I++LEGL+ VR RPGMYIG T E+ LHHL E++D Sbjct: 2 ADSGNPSQTPDPSDQKA---YDASAIQVLEGLDAVRKRPGMYIGSTGERGLHHLVYEIVD 58 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A+ I V++ +G + VVDNGRGIPV P ++ +E++LT LHAGGKF Sbjct: 59 NSVDEALAGHADTIGVTILADGGVRVVDNGRGIPVGIMP-GQDRPAVEVVLTVLHAGGKF 117 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 Y +SGGLHGVGISVVNALS L V ++ ++Q++ G P +PL + E+ Sbjct: 118 GGGGYAVSGGLHGVGISVVNALSTRLAVDISTDGARWTQEYKSGAPTAPLARHEETGETG 177 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEE 262 T +TF DP IF + L + Q A+L+ + + ++ E + G P Sbjct: 178 -TTVTFWADPDIFETTV-YSFETLSRRFQEMAFLNKGLTIALTDERPEHVDDEGKPLSVT 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 + + GG+ ++ + + + + E A+ W + S+ NT Sbjct: 236 YRYDGGIADFVAHLNSRKGEVIHPSVIDFEAEDKDKTISAEIAMQWNSSYTEGVYSFANT 295 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEF 379 I T GGTHE G R ALT + +YA + ++ ++ +D+ I+SV + EP+F Sbjct: 296 IHTHGGGTHEEGFRAALTGLMNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQF 355 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439 GQTK KL + +A+ V+ + + +L +NP EA ++ I+ + R+ RK R++ Sbjct: 356 EGQTKDKLGNTEAKTFVQKVVNEHLADWLDRNPAEAADIIRKSIQAASARVAARKARDLT 415 Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 R+ + LPGKL+DC E+FIVEGDSAGGSAKQ R+ QA+LP+RGKILN Sbjct: 416 RRKGLLESASLPGKLSDCQSKDPAECEIFIVEGDSAGGSAKQGRDPRTQAILPIRGKILN 475 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A +K+ N ++ L+ A GC + Y LRY K+++M DADVDG HI +LLLT Sbjct: 476 VEKARIDKVLQNTEVQALISAFGCGIQEDYDAAKLRYHKIVLMADADVDGQHIRTLLLTL 535 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---I 614 ++ M L+E +++L PPL++I G YA+ + + ++ + G+ + I Sbjct: 536 LFRFMRPLVEAGYVYLAMPPLYKIKWGRDEFEYAYSDRERDALIAAGVEAGRRLPKDDAI 595 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 RFKGLGEM A +L+ T MDA R LL+V + D + LMG + R FI Sbjct: 596 QRFKGLGEMNAEELRVTTMDAAHRLLLQVTLED----AARADDLFSVLMGEDVEARRSFI 651 Query: 675 QERASFIDDVG 685 Q A + + Sbjct: 652 QRNAKDVRFLD 662 >gi|293977916|ref|YP_003543346.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN] gi|292667847|gb|ADE35482.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN] Length = 667 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 255/658 (38%), Positives = 381/658 (57%), Gaps = 23/658 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + +++NY + +I+ L+G+E VR+RP MYIG K LHH+ EVI+N++DE ++G+ + I Sbjct: 17 KKSNENYTSKNIKFLDGIEHVRLRPSMYIGDIGIKGLHHMVYEVINNSIDESLSGFCDKI 76 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV+DNGRGIPVE H K S LE+++T + AGGKFDN++Y+ SGGLHGV Sbjct: 77 YVTIHKDNSITVLDNGRGIPVELHEK-EGISALELVMTKIGAGGKFDNNSYKFSGGLHGV 135 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GIS VNALS +L + R I+ QK+SRG+P+S LE +N+RGT+ITF+ D Sbjct: 136 GISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQITFKADK-FLF 194 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 K ++ + L + ++L+ + +++I+ K G +K F+ G+K +L Sbjct: 195 KKRSYNYSILKNRLRELSFLNKGLSISLLDERKIS-KTGFFKKNHFFSKKGIKEFLMFIE 253 Query: 278 ENRSLISSEIFTGKTEKKG-------THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 N+ I K+ K +E + + +I SY N I T EGGT Sbjct: 254 TNKESIIENYKDKKSRIKDFFYLKKNKKNLNLELVMRYNSSYKEKIFSYVNNINTSEGGT 313 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 H SG + ALT+ KK+ + + + I + IL++ I P+F GQTK KLV+ Sbjct: 314 HISGFKKALTKTFKKFFSKNRRFKKLKISGGSFIEGLTAILTIKIINPKFEGQTKNKLVN 373 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 + VE ++ F+ +L +NP+ K+L V ++ R ++ RE+ + +K L Sbjct: 374 YEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVRELIKTKTSKKNNL 433 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 P KLADCS + EL++VEGDSAGG+AKQ R R QAVLPLRGKILNV + KI Sbjct: 434 PIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKSIKNKIFE 493 Query: 510 NQQIMDLVQALGCRTRSQYREEDLR-----YEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N++I ++ ALG + L Y+K+IIMTDAD+DG+HI++L+LTFF++ M Sbjct: 494 NEEIKNIFLALGVFFFKKKNIIKLNIKKIRYKKIIIMTDADIDGSHISTLVLTFFFRYMR 553 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 LIE+ ++++ +PPLF I K +YA + + ++KIL KK I I R+KGLGEM Sbjct: 554 ILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKIL---KKSLLKGISIQRYKGLGEMN 610 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A QL ET M+ RTL +V I ++ K + LMG R +FI+ A F Sbjct: 611 AEQLWETTMNPINRTLRKVTI----HNRKIANKIFSMLMGENVLPRKQFIETNALFAK 664 >gi|300173091|ref|YP_003772257.1| DNA topoisomerase IV subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299887470|emb|CBL91438.1| DNA topoisomerase IV, B subunit [Leuconostoc gasicomitatum LMG 18811] Length = 690 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 247/658 (37%), Positives = 357/658 (54%), Gaps = 33/658 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ SI+ILEGLE VR RPGMYIG TD + LHHL E++DNA+DE + GY + I V++ Sbjct: 5 NHYDSDSIKILEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALGGYGHDIRVTI 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV D GRG+PV H K T E+ILT LHAGGKF Y SGGLHGVG SV Sbjct: 65 HENNAITVQDFGRGMPVGMHE--SGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VT+ R + + F G P+ L + GT++TF+PD IF Sbjct: 123 VNALSESLQVTIVRDGHKWQEDFIKGGQPVGTLRDLGVTKEPSGTKVTFKPDATIFSATV 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + + A+L VK + ++ EE+++ GL+ ++ E + Sbjct: 183 -YKYDTLSERLRESAFLMSGVKFSLTDER-----VKPKRVEEYHYEKGLEAFVGFLNEEK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 I S T + ++ G VE A + + E S+ N + T +GGTHE G R A T Sbjct: 237 ETIGSI-MTFEGQQDGI---AVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + +YA ++ ++ D+ ++S+ + E +F GQTK KL + +A+ Sbjct: 293 KAFNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKGKLGTPEARGI 352 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGK 452 V+ + + +L++N L+ I E R RK R+ +R + + GK Sbjct: 353 VDAVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA A ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N++ Sbjct: 413 LAPAQSKNAEHNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I L+ A+G + ++ D + KVIIMTDAD DGAHI +LLLTFFY+ M LIE + Sbjct: 473 ISTLIYAIGGGVGTDFKVADTAFSKVIIMTDADDDGAHIQTLLLTFFYKYMKPLIEAGRV 532 Query: 573 FLISPPLFRITQGTKSV---YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 ++ PPL+R+ +K +A + LE + E++RFKGLGEM A L Sbjct: 533 YIALPPLYRVKYASKKFEDKFAWTNDE----LETITNQNDARYELTRFKGLGEMNAPLLW 588 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDDVGT 686 ET MD RTL+RV+I+ + + + LMG K + R ++I+ F +D+ G+ Sbjct: 589 ETTMDPESRTLIRVKIDDAV----LAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGS 642 >gi|323498028|ref|ZP_08103036.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326] gi|323316904|gb|EGA69907.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326] Length = 626 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 246/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I+V Sbjct: 2 AEQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-KGISGVELILTKLHAGGKFSNDNYKFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219 VVNALS + VTV R+ + F G ++ L + GT + F PD K F Sbjct: 118 VVNALSKRVEVTVKREGQVHEIAFEHGNAVTELTVTGTCGHRNTGTSVHFWPDAKYFDSY 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F + RL+ ++KA L ++ +S E ++++ GLK YL ++ Sbjct: 178 -KFSSLRLVNNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ +E + G+ T SY N + T +GGTH +GLR L Sbjct: 230 YEVLPAEPYIGEFTADTEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDNDNL-DGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDN----ESTMEMMDMLLGKKRADDRRSWLQNNGDMAE 625 >gi|226312850|ref|YP_002772744.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599] gi|226095798|dbj|BAH44240.1| DNA topoisomerase IV subunit B [Brevibacillus brevis NBRC 100599] Length = 656 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 232/670 (34%), Positives = 355/670 (52%), Gaps = 44/670 (6%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + Y I++LEGL VR RPGMYIG T + LHHL E++DNA DE +AG Sbjct: 2 KETETQQTLTYTEEDIQVLEGLIAVRKRPGMYIGSTGSRGLHHLLWEIVDNAKDEALAGV 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V+L +G ++V D+GRGIP H + E+I TTLHAGGKF Y+ SGG Sbjct: 62 NDSIIVTLYKDGSVSVEDHGRGIPTGMHK--TGRPVPEVIFTTLHAGGKFGGGGYKKSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSR----------GIPLSPLEKKEKVRNKR 203 LHGVG SVV ALS L V + R+ I Q+F G P++ LE + Sbjct: 120 LHGVGSSVVVALSKWLEVEIHREGKIHKQRFEYVVDANGTEHVGKPVTGLEITGNTKR-T 178 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT + F PD +FG+ A FD + + A+L +++ ++ +K EEF Sbjct: 179 GTTVRFLPDDAVFGN-ARFDYETIRDRFRETAFLLKKLRMVLIDERGPEKKR-----EEF 232 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322 YF GLK+Y+ E ++ + + EK + VE A + + + SY N+I Sbjct: 233 YFEDGLKSYVSYLNEGKNSLHPI-VYFEGEKDNIY---VELAFQYNDGYAETLVSYVNSI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380 +T +GGTH +G R TR ++A ++ ++ +DL +G+LS+ + + +F Sbjct: 289 VTTDGGTHVTGFRNGTTRIFNEFARKKGYLKEKDPNLTGNDLREGFLGVLSLQMADVQFE 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---- 436 QTK KL + +A+ VE + + +L +NP L++ + +E R RKQR Sbjct: 349 SQTKDKLGNEEARAIVEQIVSEKLGFFLEENPEIGKLLIDKAVRSAEIREELRKQREALR 408 Query: 437 -EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 + KTA ++ + K + ELF+VEGDSAGGSAKQARN QA+ LRGK Sbjct: 409 GDKKGKTAKKRKSISEKFTPPQYRDSKRNELFLVEGDSAGGSAKQARNSEFQALFSLRGK 468 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 LN A ++ N++ +++ L ++ E+ ++KVIIM+DADVDG+HI +LL Sbjct: 469 PLNTEKAKLSEVLANEEFRTILEVLETDIGEEFSIENCAFDKVIIMSDADVDGSHIQTLL 528 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKS--VYAHDEEHKQKILEEFKKHGKG 610 LTFF++ M +I HL++ PPL+++ +G ++ +Y + ++ L++ + Sbjct: 529 LTFFFRYMRPMIAAGHLYIAQPPLYQVKKQSKGKQTEAIYCWSDYELEQALKKVGR---- 584 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADER 670 E+ R+KGLGEM A QL ET MD R L++VE+ L + + LMG K R Sbjct: 585 GAEVQRYKGLGEMNADQLWETTMDPETRKLIKVELED----LAHCEKLVTVLMGDKVPPR 640 Query: 671 FKFIQERASF 680 ++I+ +F Sbjct: 641 REWIENHVTF 650 >gi|94984653|ref|YP_604017.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM 11300] gi|94554934|gb|ABF44848.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM 11300] Length = 711 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 258/663 (38%), Positives = 357/663 (53%), Gaps = 22/663 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAG 92 D+Y A SI IL+GLE VR RPGMY+ GGT H L +E+IDNA+DE +AG Sbjct: 54 TMTQALPQDHYTADSISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNAIDEGLAG 113 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A + V + +G TV DNGRGIPV+ K + +E+I T LHAGGKF Y++SG Sbjct: 114 FATEVHVIMHADGSATVTDNGRGIPVDIM-KSEGRPAIEVIFTELHAGGKFGGGAYKVSG 172 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITFR 210 GLHGVG SVVNALS L VTV + + +F RG +PLE + T++TF Sbjct: 173 GLHGVGSSVVNALSTYLDVTVNKDGNLHHIRFERGTVTTPLEVLGPTPQDVRWATKVTFH 232 Query: 211 PDPKIFGDKAG-FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDP +F + F+ R+ + AYL+G K ++ G +E F+ GG+ Sbjct: 233 PDPTVFSEFENLFNYDRIRGRLRELAYLTGL-KIVVRDERVGLH-GGEIREETFHEQGGI 290 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGT 329 + + + + S + + V + A + I +Y N I T +GGT Sbjct: 291 ANFARALVTDDSKLLYDQPIVMRGTHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGT 350 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 +G + A TR + KYA+ ++ + DDL+ ++SV + EP+F Q K KL Sbjct: 351 PLTGFKTAYTRILNKYAKDKNLIKSGNPVPTGDDLLEGIYCVVSVKLPEPQFESQAKVKL 410 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRK 446 ++ +AQ V + + F +L +NP ++E E + R RK V R + Sbjct: 411 LNSEAQTAVNAIVGEKFTEFLEENPKIGRTIVEKAAEAARAREAARKARDIVRRSNPLEN 470 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC+ +ELFIVEGDSAGGSAK R R QA+LPLRGKILNV + K Sbjct: 471 DDLPGKLADCTSQDPAESELFIVEGDSAGGSAKMGRERRYQAILPLRGKILNVEKSDLNK 530 Query: 507 IRNNQQIMDLVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 I N +I ++ A+G R + +LRY K+IIMTDAD+DG HI +LLLTFFY+ Sbjct: 531 ILKNAEIRAMIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHITTLLLTFFYR 590 Query: 562 EMYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 M +IE +L++ PPL+RI G K Y + EE ++ + K GK K EI RFKG Sbjct: 591 YMRPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKEGK-KYEIQRFKG 649 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM A QL +T M+ R L RV++ L + LMG + R +FIQE A Sbjct: 650 LGEMNAEQLWDTTMNPETRALKRVQVED----LIIANEVFEDLMGNEVGPRKRFIQENAR 705 Query: 680 FID 682 F + Sbjct: 706 FAE 708 >gi|330813294|ref|YP_004357533.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063] gi|327486389|gb|AEA80794.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063] Length = 696 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 257/702 (36%), Positives = 379/702 (53%), Gaps = 64/702 (9%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 ++Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ Sbjct: 6 KKIEKPESYGADSIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGHC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V ++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGL Sbjct: 66 SKIDVFINADNTVTVSDNGRGIPVDIH-KSEGISAAEVIMTQLHAGGKFDHNTYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L +T++R+ + +F G + PL + + GT +TF P + Sbjct: 125 HGVGVSVVNALSKNLKLTISREKKKYFVEFENGAVVKPLVEIG-SSEETGTTLTFSPSTE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + L K + AYL+ ++ ++ P+ +F F GG+K ++ Sbjct: 184 IFTS-TKFQISILEKRLKELAYLNKGLEINLIDQRKSK-----PQIFQFKFEGGIKEFVI 237 Query: 275 TKLENRSLI---------SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTD 325 +N+ I I+ T+ ++ W + + ++ + N I Sbjct: 238 DLNKNKEKIKNDTGKQVLDDPIYFIGTKNNIEVECSLVWNATY---SEQVMCFTNNIPQK 294 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH G R A+TR I KY K ++I DD+ + +LS + +P+F+ QT Sbjct: 295 DGGTHLLGFRNAITRLINKYVTDNGLAKKEKVAISGDDVREGLICVLSAKVPDPKFSSQT 354 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKT 442 K KLVS + + VE + + Q+ E ++ +I+ + R RK RE RK+ Sbjct: 355 KEKLVSSEVRPVVETIASEQLSMWFDQHQKETKIIIGKIIQAAVAREVARKARESVRRKS 414 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-- 500 A+ LPGKLADC N ELFIVEGDSAGGSAKQARNR QAVLPLRGKILN Sbjct: 415 ALDITSLPGKLADCQTNDKEMAELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTYVQ 474 Query: 501 --------SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552 K+ ++ +I+ L+ ALG ++ E+LRY K++IMTDADVDG+HI Sbjct: 475 QKNDSSEKKKVFAKMLSSNEIITLINALGTG-FDPFQIENLRYGKIVIMTDADVDGSHIR 533 Query: 553 SLLLTFFYQE-MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI-------LEEF 604 +LLLTFF E LI +F+ PPL+++T+G+KS Y +EE + L+ Sbjct: 534 TLLLTFFNNEPFNQLIRSGRIFIAQPPLYKMTKGSKSTYIKNEEALEDFIISNSAVLKSM 593 Query: 605 KKHG----------KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK-----DL 649 KK+ K K + RFKGLGEM +L T +D TLL+V + + Sbjct: 594 KKNSEEFKNSFEMEKAKYTLQRFKGLGEMNPEELWNTTLDPKNNTLLKVNYSSSCDKLAM 653 Query: 650 NSLKDTQ------DSINKLMGTKADERFKFIQERASFIDDVG 685 ++T + + LMG +R FI A ++++ Sbjct: 654 EGSEETSPSPEDIEIFDILMGDDVSKRKNFINTNAINVNNLD 695 >gi|307128690|ref|YP_003880720.1| DNA gyrasesubunit B [Candidatus Sulcia muelleri CARI] gi|306483152|gb|ADM90022.1| DNA gyrase B subunit [Candidatus Sulcia muelleri CARI] Length = 638 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 254/652 (38%), Positives = 380/652 (58%), Gaps = 23/652 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY + +I+ ++G+E VR+RP MYIG + LHH+ EV+DN++DE ++G+ N I V++ Sbjct: 2 NYTSKNIQYIDGIEHVRLRPSMYIGDIGIQGLHHMVYEVVDNSIDESLSGFCNKIYVTIH 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +T++DNGRGIPV+ H K S LE+++T + AGGKFDN++Y++SGGLHGVGIS V Sbjct: 62 KDNSITILDNGRGIPVDLHKK-KGISALELVMTKIGAGGKFDNNSYKVSGGLHGVGISCV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V R I+ QK+SRGIP+S + K NK GT+I+F+ D IF + Sbjct: 121 NALSSNLIAKVYRNGKIYEQKYSRGIPISKINIIGKCHNKVGTKISFKADKLIFKKI-KY 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + L+ + +YL+ + ++E +K G +K+ F+ G+K +L + Sbjct: 180 NYSILMNRLRELSYLNKGLSIYLLDERE-IDKNGNFKKKIFFSKKGIKEFLIFIEKKNDN 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I KK + +E A+ + +I SY N I T +GGTH SG + ALT+ Sbjct: 239 IIYI-------KKKNLKLELELAMRFNSSFKEKIYSYVNNINTSQGGTHISGFKRALTKT 291 Query: 342 IKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +KK Y K I I +L IL++ I P+F GQ K KLV+ + VE Sbjct: 292 LKKFFYKFFPLKKNKIEITGKNLREGLTAILAIRIINPQFEGQIKNKLVNNEIIGLVEKI 351 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +N K+L+ + + + +K RE+ K LP KLADCS N Sbjct: 352 INKHISIFFKKNIFFLKKILKKIFLSVKAQKTLKKARELINKKTSIHKFLPIKLADCSFN 411 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + E+++VEGDSAGG+AKQ R R QAVLPLRGKILNV KI +N++I +++ A Sbjct: 412 DPNLCEIYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKNIINKIFSNEEIKNIISA 471 Query: 520 LGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 LG + ++LRY+K+IIMTDAD+DG+HI++L+LT F++ M LIE+ ++++ Sbjct: 472 LGVYIFFEKKKINLNIDNLRYKKIIIMTDADIDGSHISTLILTLFFKYMRILIEKGYIYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 +PPLF I K YA +E+ + KIL++ K + KI + R+KGLGEM A QL ET M+ Sbjct: 532 ATPPLFLIKTFNKKFYAWNEKERNKILKKLKMNSLKKISVQRYKGLGEMNAEQLWETTMN 591 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 RTL +V I+ +LK ++ LMG R KFI++ F ++ T Sbjct: 592 PINRTLRKVTIS----NLKIAKNIFYMLMGNNVIPRKKFIEKNYIFA-NIDT 638 >gi|269314035|gb|ACZ36919.1| DNA gyrase B [Mycobacterium chelonae] Length = 651 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 239/664 (35%), Positives = 364/664 (54%), Gaps = 47/664 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA +EV++ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLE 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 61 DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS ++ + + R + Q ++ +P + ++ K GT + F DP+IF +D Sbjct: 119 ALSTKVELEILRDGHEWQQVYTASVPGTL--QQGAATKKTGTTVRFWADPEIFET-TTYD 175 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDK-------------------------EIAEKYGIP 258 + + Q +A+L+ + + ++ + Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTAEAPKTAEEQAAESAAPHKV 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + F++P GL +++ +S I + I + +G VE A+ W + + Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375 + NTI T EGGTHE G R ALT + KY + ++ ++ DD+ ++SV + Sbjct: 293 FANTINTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTNLTGDDIREGLAAVISVKVG 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + + + V+ + H+ NP +A ++ + ++ R+ RK Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ QA+LPLRG Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KI+NV A +++ N ++ ++ ALG ++ LRY K+++M DADVDG HI++L Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M L+E H+FL PPL+++ + +A+ + + ++E K GK KI Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591 Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM A +L ET MD + R L +V ++ + + LMG + Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647 Query: 670 RFKF 673 R F Sbjct: 648 RRSF 651 >gi|269314037|gb|ACZ36920.1| DNA gyrase B [Mycobacterium immunogenum] Length = 651 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 239/664 (35%), Positives = 364/664 (54%), Gaps = 47/664 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A SI ILEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +AGYA +EV++ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGYATTVEVTMLA 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIPV H T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVN Sbjct: 61 DGGIQVKDDGRGIPVAMH--ASGIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS ++ + + R ++Q ++ +P + ++ K GT + F DP+IF +D Sbjct: 119 ALSTKVELEILRDGHEWNQVYTASVPGTL--QQGGATKKTGTTVRFWADPEIFET-TTYD 175 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-------------------------YGIP 258 + + Q +A+L+ + + ++ Sbjct: 176 FETVARRLQEQAFLNKGLTIKLTDERVSDSDVTDEVVRDTAEAPKTAEEQAAESAAPHKV 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 + F++P GL +++ +S I + I + +G VE A+ W + + Sbjct: 236 KNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGH---EVEIAMQWNAGYSESVHT 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKY--AELTQNKRAISIISDDLMISAVGILSVFIR 375 + NTI T EGGTHE G R ALT + KY + ++ ++ DD+ ++SV + Sbjct: 293 FANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVG 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F GQTKTKL + + + V+ + H+ NP +A ++ + ++ R+ RK Sbjct: 353 EPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKA 412 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE V RK+A LPGKLADC +EL++VEGDSAGGSAK R+ QA+LPLRG Sbjct: 413 RELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KI+NV A +++ N ++ ++ ALG ++ LRY K+++M DADVDG HI++L Sbjct: 473 KIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIAKLRYHKIVLMADADVDGQHISTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE 613 LLT ++ M L+E H+FL PPL+++ + +A+ + + ++E K GK KI Sbjct: 533 LLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGK-KIN 591 Query: 614 ----ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I R+KGLGEM A +L ET MD + R L +V ++ + + LMG + Sbjct: 592 KDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD----AAAADELFSILMGEDVEA 647 Query: 670 RFKF 673 R F Sbjct: 648 RRSF 651 >gi|283458293|ref|YP_003362912.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] gi|283134327|dbj|BAI65092.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] Length = 724 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 244/728 (33%), Positives = 350/728 (48%), Gaps = 68/728 (9%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69 + PP S + IP AS NY A + +LEGLE VR RPGMYIG T Sbjct: 4 TRTPPGGTRSPPQTYSPERIPV--------ASSNYTARHLSVLEGLEAVRKRPGMYIGST 55 Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 D + L H E+IDN++DE +AG+ I+V L +G + V D+GRGIP + P+ S Sbjct: 56 DSRGLMHCLWEIIDNSVDEALAGFGQSIQVILYRDGSVEVRDDGRGIPTDIEPR-TGLSG 114 Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189 +E++ T LHAGGKF +Y SGGLHGVG SVVNALS L V V R + + F GIP Sbjct: 115 VEVVFTKLHAGGKFGGGSYNASGGLHGVGASVVNALSSRLDVQVDRGSKTYQMSFRHGIP 174 Query: 190 LSPLEKKEKVRNK----------------------RGTRITFRPDPKIFGDKAGFDAARL 227 + GTR+ + DP+IF A F L Sbjct: 175 GFFESGRTPKPEDPFTPATEGTDALQIVGRAKRGVTGTRVRYWADPQIFTPDAKFSYEDL 234 Query: 228 LKMTQSKAYLSGRVKTCWSCDKE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285 + A+L ++ C ++ P +E F + GG+ +++ + + + Sbjct: 235 AARVRQTAFLIPGLRICIRDERRLPGTPGELEPHEEVFQYDGGISEFVEFLAHDERITDT 294 Query: 286 EIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 F+G V+ A+ W S+ N I T +GG Sbjct: 295 WRFSGSGSFTETVPVLGEDGRSQLTDVERDCEVDVALRWGIGYETTVRSFVNIIATPKGG 354 Query: 329 THESGLRVALTRGIKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKT 385 TH +G L R ++K+ K + I DD++ +L+V + EP+F GQTK Sbjct: 355 THTTGFEQGLLRVMRKHLADNARKYKVGNDKIEKDDVLAGLTAVLTVRLAEPQFEGQTKE 414 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQN----PIEATKLLEWVIERSEERLRRRKQRE-VNR 440 L + ++ V + D L +A L E V+ + R+ R +E R Sbjct: 415 ILGTPAVRQIVSKVVGDALKARLESTARAEKAQAAALCEKVVSEMKTRVSARIHKETQRR 474 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 KTA+ +P KL DC +ELFIVEGDSA G+A+ AR+ S QA+LP+RGKILN Sbjct: 475 KTALESSSMPTKLVDCRSTNVEHSELFIVEGDSALGTARLARSSSYQALLPIRGKILNTQ 534 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A + N + L+Q +G + + + RY KVI+MTDADVDGAHI +LLLT FY Sbjct: 535 RASVTDVLANAECAALIQVIGAGSGRTFDLDSARYGKVIMMTDADVDGAHIRTLLLTLFY 594 Query: 561 QEMYDLIEQKHLFLISPPLFR---ITQGT--KSVYAHDEEHKQKILEEFKKHG-KGKIEI 614 + M LIE ++ PPL R + +G + VY + E+ ++L+ ++ G K I Sbjct: 595 RYMRPLIEAGRVYAAVPPLHRVEVVRRGKPNEMVYTYSEKQLHELLDSLQEQGVSYKEPI 654 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM A QL ET MD R L R+ I + + + + LMG++ R +FI Sbjct: 655 QRYKGLGEMDADQLAETTMDPRHRMLRRIRIED----AEAAERAFSLLMGSEVAPRKEFI 710 Query: 675 QERASFID 682 A +D Sbjct: 711 IAGAHQLD 718 >gi|108763546|ref|YP_630703.1| type II DNA topoisomerase subunit B [Myxococcus xanthus DK 1622] gi|108467426|gb|ABF92611.1| type II DNA topoisomerase, B subunit [Myxococcus xanthus DK 1622] Length = 643 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 270/652 (41%), Positives = 378/652 (57%), Gaps = 17/652 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y + I++LEGLEPVR RP MYIGGTD HHL E++DN++DEVI G+A +E Sbjct: 3 TKKETYTGADIQVLEGLEPVRKRPAMYIGGTDSTGYHHLLWEILDNSVDEVINGFATTVE 62 Query: 99 VSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V+L +G +T+VDNGRGIPV+ PK+ K +E+ILTTLHAGGKF+ Y SGGLHGV Sbjct: 63 VTLHKDGRSVTIVDNGRGIPVDIMPKY-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNAL+ +L V + Q F+RG S L+ R GT +TF PDP+IFG Sbjct: 122 GSSVVNALARKLVVEIKLHGKKHVQTFARGKATSTLKVDGAARG-TGTSVTFEPDPEIFG 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +K FDA + + ++K+YL + W E P + GG+ YL + Sbjct: 181 EKLKFDAELVRERLEAKSYLHKGMTVVWKD-----ETSSPPTSVTYKHDGGIAEYLTKVV 235 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 R+ + + +E A+AW E + I SY N I T GGTHE+GLR Sbjct: 236 TERNKPLVPAGSAAFYHARDNGVRLEAALAWTEATDEHIRSYVNGIPTPLGGTHEAGLRS 295 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+ + ++ Y E + +++ ++D+ ILS ++ EP+F GQTK +L + + Sbjct: 296 AVVKAVRNYIETHGIAPKGVTLTAEDIREGITAILSTYVVEPQFQGQTKGRLNNPEVSGQ 355 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453 V+ LR + +L N A ++ ++ + R R + + +L LPGKL Sbjct: 356 VDGVLRPALEKWLNDNKSIAESVVARIVLAARAREASRAASQAVSRKTAVSHRLNLPGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +ELFIVEGDSAGGSAKQ R+R QA+LPLRGK+LN A ++K+ N+++ Sbjct: 416 ADCSSTDPGLSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVTTNKEL 475 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 D+V ALGC S + LRY +V ++ DAD DG HIA+LLLTFFY+ + LIE + Sbjct: 476 QDIVSALGCGIGSDFDISKLRYGRVFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAIH 535 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+R+ G ++ +A DE + +I++E K G K I RFKGLGEM +LKET + Sbjct: 536 IAQPPLYRVDIGKETYWALDEPDRDRIIKE-KTKGNAKPNIMRFKGLGEMTPDELKETTL 594 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R LRV I+K L +T IN LMG RF+FI ERAS + D+ Sbjct: 595 DPKHRMSLRVTIDKPL----ETDRLINDLMGKDVSARFRFIMERASEVQDLD 642 >gi|225374474|ref|ZP_03751695.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM 16841] gi|225213712|gb|EEG96066.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM 16841] Length = 638 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 238/655 (36%), Positives = 346/655 (52%), Gaps = 34/655 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AG + I V+L+ Sbjct: 4 YDEHSISVLEGLEAVRKRPGMYIGSVSRKGLNHLIYEIVDNSVDEHLAGACDTIHVTLEK 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 NG TV DNGRG+PV H K S ++ TTLHAGGKFD+S Y+ SGGLHGVG SVVN Sbjct: 64 NGSCTVEDNGRGVPVGMHAK--GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLE-----KKEKVRNKRGTRITFRPDPKIFGD 218 ALS + V ++R+ I ++ RG+P+ LE K K + GT++ F PDP+IF Sbjct: 122 ALSVYMDVEISREGYIHHDRYERGVPVVELENGLLPKIGKTKK-TGTKVNFLPDPEIFEK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + AYL+ ++ + + E ++ G++ +++ + Sbjct: 181 -TRFKEDEIKSRMHETAYLNPKLTIIYEDRR-----GEEVEHIVYHEEDGIRGFVKDLNK 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N ++ ++ K E +G TVE A + E I +CN I EGGTH +G + Sbjct: 235 NTEVLH-DVVYFKGESEGI---TVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTV 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 T I YA ++ ++ D+ ++S+ +P F GQTKTKL + DA + Sbjct: 291 FTTVINSYARELGILKEKDVNFTGADVRNGMTAVVSIKHPDPRFEGQTKTKLDNQDAAKA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 D + +N ++ + ++ R + + GKLA+ Sbjct: 351 TAKVTGDEIQLFFDKNLETLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDSNGKLAN 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C A E+FIVEGDSAGGSAK AR+R+ QA+LP+RGKILNV A +K+ N +I Sbjct: 411 CESRDASICEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIKT 470 Query: 516 LVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI + H Sbjct: 471 MINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGH 530 Query: 572 LFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 +++ PPL+++ G + Y +D+ +K K H + R+KGLGEM A QL E Sbjct: 531 VYVAMPPLYKVIPGKGEEEYLYDDAALEKYR---KAHKGSNFTLQRYKGLGEMDAEQLWE 587 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T ++ R L R+EI + D LMG R FI E A + + Sbjct: 588 TTLNPATRMLKRIEIEDG----RMASDITELLMGNDVPPRKTFIYEHAHDAE-LD 637 >gi|290243050|ref|YP_003494720.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix] gi|288945555|gb|ADC73253.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. K90mix] Length = 650 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 244/648 (37%), Positives = 350/648 (54%), Gaps = 10/648 (1%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A A+ Y + SI++LEGLEPVR RPGMYIGGTD L HL +E++DNA+DE IAG+ Sbjct: 2 SAIPEAARQYTSESIQVLEGLEPVRKRPGMYIGGTDSSGLRHLLNEILDNAVDEAIAGHG 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV +G +V DNGRGIP++ H + +++TTLHAGGKFDN+ Y++SGGL Sbjct: 62 DEIEVVFHQDGSYSVNDNGRGIPIDMHRE-KGMHAAALLVTTLHAGGKFDNAAYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG +V NA+S + + R + Q F+ G S E K + GT I F PD Sbjct: 121 HGVGAAVTNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSYTGTLIRFWPDLA 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F + A D + + AYL ++ ++ +E P + F F + Sbjct: 181 RFDEDAEIDFDFMADRMKRTAYLVPGLQLSIR-EEVASEGGDEPRQAVFRFESFSQIIED 239 Query: 275 TKLENRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 +++ IS I E G V A+ W E N + + I+ GTH +G Sbjct: 240 LSVDSGDAISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTADGTHMTG 299 Query: 334 LRVALTRGIKKYAELTQNKR-AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR A+T+ + YAE R + DD+ + ++V + +P F GQTK KL + Sbjct: 300 LRKAVTQAVNNYAEANNLLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPV 359 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLP 450 V A+R DH +NP A ++E + R K E+ NRK+ I LP Sbjct: 360 TGVVSRAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +ELFIVEGDSAGGSAK R R QA+LPL+GKILN A K+ + Sbjct: 420 GKLADCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKS 479 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ +L+ ALGC +S + E LRY +++I+ DAD DG HIA+L+LT+F+ +LIE Sbjct: 480 DEVKNLMLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESG 539 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL+R+ +G +S Y D+ + + + K K ++ RFKGLGEM A QL E Sbjct: 540 YVYIALPPLYRVRKGKQSAYLKDDRELEAFMAQQK--NPDKWQVQRFKGLGEMNAEQLWE 597 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 AMD R + RV+ ++ + LMG + R FI+E A Sbjct: 598 AAMDPETRRIARVQYSEQGREGD--NEVFEVLMGAEVPPRRAFIEEYA 643 >gi|313123649|ref|YP_004033908.1| DNA topoisomerase iv subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280212|gb|ADQ60931.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 643 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 237/649 (36%), Positives = 350/649 (53%), Gaps = 29/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD SSI+IL GLE VR RPGMYIG TD L+ L E++DN++DE +AG+ I V Sbjct: 2 PKNTYDDSSIQILHGLEAVRKRPGMYIGSTDIHGLNQLVYEIVDNSVDEAMAGFGQEINV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +TV D GRG+P H + T+E+ILT LHAGGKF Y+ SGGLHGVG Sbjct: 62 TIHEDNSVTVQDFGRGMPTGMH--ASGRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 119 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R + ++F G P+ L K GT ITF+PDP IF Sbjct: 120 SVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATEEKTGTTITFKPDPMIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ + + + A+L VK + ++ + F + G+++++ E Sbjct: 180 T-KYNYETIQERIRESAFLLKGVKFTLTDERTPN------HHDVFQYDDGIESFVSYLNE 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 + I + + G +E+A + + E S+ N + T +GG+HE G R Sbjct: 233 GKGTIGKVF-YFEGSQDG---MEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSG 288 Query: 338 LTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 TR YA+ K+ ++ D +LSV I E EF GQTK KL + A+ Sbjct: 289 FTRAFNDYAKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQAR 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPG 451 V++ + + +YL++N A L++ + + R +K R+ +R +K L G Sbjct: 349 SAVDSIVYEKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A I N+ Sbjct: 409 KLTPAQSRNPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNE 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ +G ++++ ED Y+K+IIMTDAD DGAHI LLLTFFY+ M +IE Sbjct: 469 EINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGK 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+RI++ ++YA +E + + ++ K + RFKGLGEM A QL ET Sbjct: 529 VYIALPPLYRISKKQTNLYAWTDEERDEEEKKVGK----GYALQRFKGLGEMNADQLWET 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L+RV I+ + + + LMG +A R K+I+E F Sbjct: 585 TMNPESRMLIRVRIDD----AQLAERRVTTLMGDQASARRKWIEENVKF 629 >gi|256370829|ref|YP_003108653.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007413|gb|ACU52980.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 248/655 (37%), Positives = 368/655 (56%), Gaps = 21/655 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +Y A+ I +LEGLE VR+RPGMYIG T LHHL EV+DNA+DEV+AG Sbjct: 8 KSLEPEASYTAADIVVLEGLEHVRLRPGMYIGSTGPSGLHHLVWEVVDNAVDEVMAGACT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V++ +G V DNGRGIPV+ HP P+KS E++LT L+AGGKF Y++SGGLH Sbjct: 68 EIDVTILADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLH 127 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 GVG+SVVNALS L + V R + + +F G P PLE+ +RGT +TF PDP Sbjct: 128 GVGVSVVNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPT 187 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF D F A R+L+ Q A+L+ V + ++ E F + GG+ +++ Sbjct: 188 IFED-TEFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQT-----FSYAGGIVDFVR 241 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESG 333 E + + +++ ++ VE A +W + ++ N I T+EGG H G Sbjct: 242 HLNEPKGPLFAKVGYYAASEED---MEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEG 298 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALT+ I +YA +R ++ +D+ I+SV + P+F GQTKTKL ++ Sbjct: 299 FRKALTQVINRYARARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVS 358 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLP 450 + VE + +L +NP EA +++ I + R+ + RK+ + LP Sbjct: 359 VRSFVERVTNEHLATWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLP 418 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DC+ +ELFIVEG+SAGG+ + R+ QAVLP+RGKILNV A +K+ +N Sbjct: 419 GKLTDCTSRDPSESELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSN 478 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q+I L+ A+G ++ + RY KVII+ DAD DG+HI +LLLTFF+++M L+E Sbjct: 479 QEIQSLIAAIGAGVGDEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAG 538 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL+ GT+ VY +E + + LE H K + R KGLGEM +L++ Sbjct: 539 MVYAAQPPLYSTLLGTEKVYIKNEAERLRFLEAHPNHKKPFL---RLKGLGEMDFDELRD 595 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T + ++RTLL+V I + + + LMG ++R +FIQE A + Sbjct: 596 TTLHQDRRTLLKVTIEQ----AAIADEVCSVLMGDDVEQRRRFIQENAGDARFID 646 >gi|261253833|ref|ZP_05946406.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891] gi|260937224|gb|EEX93213.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891] Length = 626 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I+V Sbjct: 2 TEQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+I+T LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-KGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219 VVNALS + VTV R I F G ++ L + GT + F PD + + D Sbjct: 118 VVNALSKRVEVTVRRGGEIHEIAFEGGNAVTELTVTGTCGHRNTGTAVHFWPD-EKYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F A RL+ ++KA L ++ +S E ++++ GLK YL ++ Sbjct: 177 YKFSALRLVNNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLSEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ +E + G+ T SY N + T +GGTH +GLR L Sbjct: 230 YEVLPAEPYIGEFTADTEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDNDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 LFRI G + YA DE+ K+ ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LFRIDCGKEVFYALDEDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDN----EQTMEMMDMLLGKKRADDRRHWLQSNGDMAE 625 >gi|320095115|ref|ZP_08026824.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 178 str. F0338] gi|319977982|gb|EFW09616.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 178 str. F0338] Length = 680 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 240/678 (35%), Positives = 355/678 (52%), Gaps = 30/678 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + Y AS I +LEGLE VR RPGMYIG T E+ LHHL EV+DN++DE +A Sbjct: 8 ADIDNKTDGAATYGASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEVVDNSVDEALA 67 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ IEV++ +G + VVDNGRGIPV+ HP ++ T+E+++T LHAGGKF Y +S Sbjct: 68 GYADHIEVTIQSDGGIKVVDNGRGIPVDEHP-TEHRPTVEVVMTILHAGGKFGGGGYAVS 126 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVGISVVNALS + + RQ ++ F+ G ++ + + GT F P Sbjct: 127 GGLHGVGISVVNALSTRVDTEIRRQGHVWRMSFANGGTPVTPLERGEETTETGTTQVFYP 186 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP------------- 258 DP IF FD L + Q A+L+ ++ + ++E A + G Sbjct: 187 DPSIFET-VEFDFETLRQRFQQMAFLNKGLRITLTDERENAIEEGDEIAGAPDEDPQEAG 245 Query: 259 --EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PE 314 + + GL+ Y++ + + E + +VE A+ W Sbjct: 246 GRRSVTYCYEHGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTGAYSSS 305 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSV 372 + ++ NTI T EGG HE G R ALT + +Y + ++ DD+ ++S+ Sbjct: 306 VHTFANTINTTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISI 365 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F GQTKTKL + +A+ V + + +P +A ++ R+ Sbjct: 366 KLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAA 425 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE R+ + +PGKL DCS E+FIVEGDSAGGSA R+ QA+LP Sbjct: 426 RKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILP 485 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHI 551 +RGKILNV A ++ ++ I L+ A G ++ E LRY K++IM DADVDG HI Sbjct: 486 IRGKILNVEKARLDRALSSDTIRSLITAFGTGIGEEFDIEKLRYGKIVIMADADVDGQHI 545 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GTKSVYAHDEEHKQKILEEFKKHGKG 610 A+LLLT ++ M LIE H F+ PPL+R+ + +A+ ++ + ++L K Sbjct: 546 ATLLLTLLFRYMRPLIEGGHTFIAMPPLYRLKWTNSDHEFAYSDKERDELLAVGAAANKR 605 Query: 611 KIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 + I R+KGLGEM +L ET MD R L +V +++ D ++ LMG Sbjct: 606 LPKEGGIQRYKGLGEMNDHELWETTMDPEHRILKQVTLDE----AADADETFTILMGDDV 661 Query: 668 DERFKFIQERASFIDDVG 685 D R FIQ A+ + + Sbjct: 662 DRRRTFIQRNATDVRFLD 679 >gi|227872280|ref|ZP_03990639.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] gi|227841892|gb|EEJ52163.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] Length = 642 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 251/660 (38%), Positives = 357/660 (54%), Gaps = 33/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y+A SI +LEGLE VR RPGMYIG K L+HL E++DN++DE +AGY I V+ Sbjct: 2 AKSYNADSITVLEGLEAVRRRPGMYIGSIGSKGLNHLIYEIVDNSVDEHLAGYCTEISVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G TV DNGRGIPV+ H K S I++TTLHAGGKFD+S+Y+ SGGLHGVG S Sbjct: 62 LHKDGSCTVRDNGRGIPVDRHKK--GISAERIVMTTLHAGGKFDDSSYKTSGGLHGVGSS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPKIF 216 VVNALS+ + V V + I+ ++ RGIP + L + GT TF PD IF Sbjct: 120 VVNALSNYMRVRVYQNGKIYEDEYERGIPKTELIDGLLPVVGKTKETGTETTFIPDDSIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F L+ AYL+ + + ++ ++Y P GL ++ Sbjct: 180 EK-TRFKEEWLMSRLHETAYLNPTLHLHFRDER-----GEEVVSRDYYEPEGLHAFVAEL 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 ++++S I S I + + + + + VE A + + E +CN I T EGGTH GL+ Sbjct: 234 VKDQSKIVSPIISFQGK---SGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLK 290 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 + + YA ++ + D V +LSV EP F GQTKTKL SL+A Sbjct: 291 TKFAQMMNSYARQLGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTKTKLASLEAA 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + V + + + + Y +N +L + ++ R + K + + GKL Sbjct: 351 KDVSSVVGEELERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDSNGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+C E+FIVEGDSAGGSAK +RNR QA+LPLRGKILNV A +K+ N +I Sbjct: 411 ANCISKTPEECEIFIVEGDSAGGSAKTSRNRHTQAILPLRGKILNVEKASMDKVLANAEI 470 Query: 514 MDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ A GC + + LRY K+I+MTDADVDG+HI +LLLTFFY+ M +LI++ Sbjct: 471 KTMINAFGCGFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQE 530 Query: 570 KHLFLISPPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 H+++ PPL+ + + K Y +DE+ +L KKHG E+ RFKGLGEM Sbjct: 531 GHIYVSMPPLYLLIPENKKEKPRYLYDEK---ALLAYQKKHGSSGYELKRFKGLGEMNPK 587 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +L ET ++ R L RVEI K + LMGT+ R +FI A + + Sbjct: 588 ELWETTLNPENRVLKRVEIED----AKLASQVTSMLMGTEVAPRREFIFTHAMEAE-IDA 642 >gi|28492972|ref|NP_787133.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist] gi|28572180|ref|NP_788960.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27] gi|28410311|emb|CAD66697.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27] gi|28476012|gb|AAO44102.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist] Length = 649 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 254/657 (38%), Positives = 361/657 (54%), Gaps = 22/657 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I++LEGLE VR RPGMYIG T + LHHL E++DN++DE +AGY I Sbjct: 4 TPEPAYGADQIQVLEGLEAVRRRPGMYIGSTGSRGLHHLVYELVDNSVDEALAGYCTKIN 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G + V DNGRGIPV+ HPK ST++++LTTLHAGGKF + Y +SGGLHGVG Sbjct: 64 VAILADGGVRVTDNGRGIPVDIHPK-EGVSTVQVVLTTLHAGGKFGSGGYSVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L+V V+RQ +F Q + G P + LE+ E+ N GT ITF PD IF Sbjct: 123 SSVVNALSKRLYVEVSRQGFVFRQNYEGGNPTAALERCEET-NATGTAITFWPDDDIFET 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ L Q A+L+ + + ++ + E + + GL Y+ + Sbjct: 182 VC-FEYEVLRSRLQQMAFLNSGLTVSITDERVDSPTN----NETYCYQNGLFDYVMYQNR 236 Query: 279 NRSLI--SSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 R EI + E K ++E A+ W + I ++ NTI T EGGTHE G R Sbjct: 237 IRKHEPLHEEIIHFQAENKD-RLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFR 295 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALT + +YA ++ S+ +D+ I+SV + EP+F GQTKTKL + + + Sbjct: 296 AALTSLVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEMR 355 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGK 452 V + + + +P +A ++ + +E RL ++ RE +RK + + +PGK Sbjct: 356 GYVHHEVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREASRKRGLFESVSMPGK 415 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L +C +ELFIVEGDSAGGSA Q R+ QAVLPLRGKILNV A +K N + Sbjct: 416 LKECQAKDPAVSELFIVEGDSAGGSAIQGRDPLTQAVLPLRGKILNVEKARLDKAIANSE 475 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ A G + E RY K+I+M+DADVDG HI +LLLT ++ M LIE ++ Sbjct: 476 IQAMLTAFGSGIAEDFDESKARYHKIILMSDADVDGQHITTLLLTLLFRYMRPLIESGYV 535 Query: 573 FLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQL 628 +L PPL+RI Y + + K L E K GK + I R+KGLGEM +L Sbjct: 536 YLAHPPLYRIKWSNSEHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKGLGEMNYREL 595 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T M+ RTL ++ ++ + + LMG D R KFIQ A + + Sbjct: 596 WDTTMNPATRTLRQITVDDVT----LADEIFSVLMGEDVDSRRKFIQHNARDVRFLD 648 >gi|255326299|ref|ZP_05367385.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296] gi|255296753|gb|EET76084.1| DNA gyrase subunit B [Rothia mucilaginosa ATCC 25296] Length = 700 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 237/698 (33%), Positives = 340/698 (48%), Gaps = 60/698 (8%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 AS NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ I+V Sbjct: 2 ASSNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V D+GRGIP + P+ S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ILYRDGSVEVRDDGRGIPTDIEPR-TGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202 SVVNALS L V V R + + F GIP + Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGR 180 Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE--IAEKY 255 GTR+ + DP+IF A F L + A+L ++ C ++ Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDAKFSYEDLAARARQTAFLIPGLRICIRDERRLPGTPGE 240 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299 P +E F + GG+ +++ + + + F+G Sbjct: 241 LEPHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERD 300 Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355 V+ A+ W S+ N I T +GGTH +G L R ++K+ K + Sbjct: 301 CEVDVALRWGIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGND 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 I DD++ +L+V + EP+F GQTK L + ++ V + D L Sbjct: 361 KIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTTRAE 420 Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 E V+ + R+ R +E RKTA+ +P KL DC +ELFIVE Sbjct: 421 KAQATALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+A+ AR+ S QA+LP+RGKILN A + N + L+Q +G + + Sbjct: 481 GDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRTFDL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR---ITQGT- 586 + RY KVI+MTDADVDGAHI +LLLT FY+ M LIE ++ PPL R + +G Sbjct: 541 DSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKP 600 Query: 587 -KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + VY + E+ ++L+ ++ G K I R+KGLGEM A QL ET MD R L R+ Sbjct: 601 NEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 I + + + + LMG++ R +FI A +D Sbjct: 661 IED----AEAAERAFSLLMGSEVAPRKEFIIAGAHQLD 694 >gi|171920906|ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524343|ref|ZP_03004375.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273777|ref|ZP_03206311.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554526|ref|YP_002284909.1| DNA topoisomerase IV subunit B [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903123|gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659753|gb|EDX53133.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249532|gb|EDY74314.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542027|gb|ACI60256.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 642 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 250/655 (38%), Positives = 355/655 (54%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD S+I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGSAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNISVV 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++++D+GRGIPV+ +P+ ST+E +LT LHAGGKFD S Y+ +GGLHGVG S Sbjct: 62 LHEDNSISILDDGRGIPVDINPQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KFS G + K K GT I F PDP IF + Sbjct: 121 VVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTKKTGTLIHFLPDPLIFKNLF 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNTIKERLHESTFLIKDLKISF-------EDKINNKKYEFINDQGLIDFIKFINETK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339 S IF K ++ VE A + ++ N + S+ N++ T EGG HE+ + ALT Sbjct: 233 KTFSDVIFF----KNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 SVVNNYARKHDLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNTKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD +KR LLRV IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPSKRLLLRVNINDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 634 >gi|327542614|gb|EGF29087.1| DNA gyrase subunit B [Rhodopirellula baltica WH47] Length = 637 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 370/649 (57%), Gaps = 19/649 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A Y+A +I LEGLEPVR RPGMYIGG LHHL E++DN++DE + G+A+ I V Sbjct: 4 APKEYNAKNITALEGLEPVRKRPGMYIGGVGSAGLHHLIWEIVDNSVDEAMNGHASEITV 63 Query: 100 SLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +L +G ++V DNGRGIPV+ HPK KS LE++LT LHAGGKF+ Y+ SGGLHGVG Sbjct: 64 TLHKDGETVSVSDNGRGIPVDKHPK-TKKSALEMVLTVLHAGGKFEGDNYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS EL V R + FSRG S L+K GT ITF PDP IF Sbjct: 123 ASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTVRGTGTSITFTPDPTIFPR 182 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ + + ++ ++L VK + + ++ F G+ YL ++ Sbjct: 183 TT-FNGDTIKQRLETASFLHRGVKVTYIDE-------VAKTRDTFLHENGIVDYLGKVIK 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 R + R V + + SY N I T GGTHE+G R + Sbjct: 235 EREARTIHEAPFTYRVDDEDRVEVTLQWTE-STDEHVRSYVNGIPTGSGGTHENGFRGGV 293 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + ++ + + R + I +D+ + I+S+F+ EP+F GQTK +L + +A VE Sbjct: 294 VKAVRNHVDTHSLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVE 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADC 456 + +R + +L NP A ++ ++ + R R E + K LPGKL+DC Sbjct: 354 SGVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGK+LN SA +KI +N++I D+ Sbjct: 414 VSGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDM 473 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + +LGC +LRY+++I++ DAD DG HI +LLLTFFY+ M LI LF+ Sbjct: 474 IASLGCGIGPSLNLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G ++ +A DEE +++IL E +G+ EI+RFKGLGEM+ L T +D Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEH--NGRANPEITRFKGLGEMMPKVLWNTTLDPT 591 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRTLL+VEI+ L +T +I+ LMG A RF+FI ERA ++ Sbjct: 592 KRTLLKVEIDDHL----ETDRTISDLMGRDASARFRFIMERAEDASEID 636 >gi|297623604|ref|YP_003705038.1| DNA topoisomerase [Truepera radiovictrix DSM 17093] gi|297164784|gb|ADI14495.1| DNA topoisomerase (ATP-hydrolyzing) [Truepera radiovictrix DSM 17093] Length = 642 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 353/656 (53%), Gaps = 31/656 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI++L+GLE VR RP MY+ GGT H L +E+IDNA+DE +AG+A+ +EV L Sbjct: 4 TYTADSIKVLKGLEGVRKRPAMYVQGGTGVDGYHQLLTEIIDNAIDEALAGHADTVEVVL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G TV DNGRGIPV K + +E+I T LHAGGKFD+ Y++SGGLHGVG SV Sbjct: 64 NPDGSATVADNGRGIPVGMM-KREGRHAIEVIFTELHAGGKFDSDAYKVSGGLHGVGSSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS L V + +F RG P+ KV+ G+++TF PD IF + Sbjct: 123 VNALSVFLEAEVKSGGKLHRIRFDRGEVTEPVHVIGKVKPGDTGSKVTFLPDHDIFKEVK 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD AR+ + + A+L+ VK + P++E F GG+ + T E Sbjct: 183 AFDYARIRRRLRELAFLTAGVKITLEDRR-----GAEPKREVFQEKGGVAAFALTLAEG- 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + + VE I +Y N I +GGTH +G + A T Sbjct: 237 NYLYDKPVLIRGHADDI---EVEVGFIHTGAYVQTILTYANMITNRDGGTHLTGFKTAYT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + YA+ K + DD + ++SV + +P+F Q K KL++ +AQ V+ Sbjct: 294 RVLNNYAKAKNLIKKGDPAPTGDDFLEGISCVVSVKLGDPQFESQAKVKLLNPEAQSAVQ 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + +L +NP A ++E + ++ R RK R+ V R I LPGKLADC Sbjct: 354 SVVYERLTEFLEENPKVAKAIIEKAVHAAKAREAARKARDLVRRANPIDNDELPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +EL+IVEG+SAGGSAK R R QA+LPLRGK+LNV A K+ N +I + Sbjct: 414 QSEDPSVSELYIVEGNSAGGSAKGGRERRFQAILPLRGKVLNVEKAQLSKVLKNAEIRAM 473 Query: 517 VQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + A+G + + E +RY ++IIM DADVDG+HI +LLLTFFY M LI+ + Sbjct: 474 IAAIGAGLEGTGDDAHFDLESVRYHRIIIMADADVDGSHIRTLLLTFFYNYMRPLIDAGY 533 Query: 572 LFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 L+L PPL+ + G Y +D+ Q++L E + K E+ RFKGLGEM +L Sbjct: 534 LYLAQPPLYAVRFGREKDVTYVYDDADLQRLLAE---NKGRKYELQRFKGLGEMNPEELW 590 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R L +V + L D +++ LMGT+ R +FI+E A + Sbjct: 591 ATTMNPETRILKKVTVEDAL----DAKETFEVLMGTEVPPRRRFIEENAHLA-QLD 641 >gi|32472532|ref|NP_865526.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] gi|32443768|emb|CAD73210.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] Length = 637 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 263/649 (40%), Positives = 370/649 (57%), Gaps = 19/649 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A Y+A +I LEGLEPVR RPGMYIGG LHHL E++DN++DE + G+A+ I V Sbjct: 4 APKEYNAKNITALEGLEPVRKRPGMYIGGVGSAGLHHLIWEIVDNSVDEAMNGHASEITV 63 Query: 100 SLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +L +G ++V DNGRGIPV+ HPK KS LE++LT LHAGGKF+ Y+ SGGLHGVG Sbjct: 64 TLHKDGETVSVSDNGRGIPVDKHPK-TKKSALEMVLTVLHAGGKFEGDNYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS EL V R + FSRG S L+K GT ITF PDP IF Sbjct: 123 ASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTIRGTGTSITFTPDPTIFPR 182 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F+ + + ++ ++L VK + + ++ F G+ YL ++ Sbjct: 183 TT-FNGDTIKQRLETASFLHRGVKVTYIDE-------VAKTRDTFLHENGIVDYLGKVIK 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 R + R V + + SY N I T GGTHE+G R + Sbjct: 235 EREARTIHEAPFTYRVDDEDRVEVTLQWTE-STDEHVRSYVNGIPTGSGGTHENGFRGGV 293 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + ++ + + R + I +D+ + I+S+F+ EP+F GQTK +L + +A VE Sbjct: 294 VKAVRNHVDTHSLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVE 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLADC 456 + +R + +L NP A ++ ++ + R R E + K LPGKL+DC Sbjct: 354 SGVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGK+LN SA +KI +N++I D+ Sbjct: 414 VSGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDM 473 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + +LGC +LRY+++I++ DAD DG HI +LLLTFFY+ M LI LF+ Sbjct: 474 IASLGCGIGPSLNLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G ++ +A DEE +++IL E +G+ EI+RFKGLGEM+ L T +D Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEH--NGRANPEITRFKGLGEMMPKVLWNTTLDPT 591 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KRTLL+VEI+ L +T +I+ LMG A RF+FI ERA ++ Sbjct: 592 KRTLLKVEIDDHL----ETDRTISDLMGRDASARFRFIMERAEDASEID 636 >gi|326402177|ref|YP_004282258.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301] gi|325049038|dbj|BAJ79376.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301] Length = 653 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 341/656 (51%), Positives = 452/656 (68%), Gaps = 7/656 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + F + +Y A I +LEGLEPVR RPGMYIGGTD+ A+HHL +E++DNAMDE +A Sbjct: 2 TDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDAAMHHLAAELLDNAMDEAVA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++IE++L LTV DNGRGIPV+ HPKF +KS LE+ILTTLH+GGKF Y S Sbjct: 62 GHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYATS 121 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNAL++ L V VAR+ T++ Q ++RG PL+ L N+RGT I F P Sbjct: 122 GGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRFVP 181 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLK 270 DP+IFGD F ARL +M +SKAYL V+ W+CD IA +P + E +FPGGL Sbjct: 182 DPEIFGD-KKFSPARLYRMCRSKAYLFRGVRIRWACDAALIAAGADVPAQAELHFPGGLA 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329 L +L + + ++ G+ + G +EWA AW E +YCNTI T GGT Sbjct: 241 DSLAEELGAAPKLVAPVWAGQADLPDDA-GRIEWACAWLETGEATLSTYCNTIPTTLGGT 299 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE+G R AL +G++ + E NKRA I ++D + LS+FIR+P+F GQTK KL S Sbjct: 300 HEAGFRAALLKGLRGFGEQRGNKRAAVITAEDATGALAAKLSLFIRDPQFQGQTKEKLTS 359 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 +AQ+ E ALRD F+H+L +P A LL +VIER+EER+RRR+Q++ RK+A R+LRL Sbjct: 360 PEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKDTPRKSATRRLRL 419 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS+ TE+F+VEGDSAGGSAKQARNR QAVLPLRGKILNVASA +EK+R Sbjct: 420 PGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQ 479 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ++ DL++ALGC +++ + LRY ++IIMTDADVDGAHIASLL+TFFY+E+ +LI Sbjct: 480 NQELKDLIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRG 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H++L PPL+R+TQG KSVYA D+ + ++++ K K+EISRFKGLGEM + LK Sbjct: 540 GHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFK-ANAKVEISRFKGLGEMPPAILK 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD +R LLRV + +T + + LMG K + RF+FIQ+ AS + ++ Sbjct: 599 ETTMDPKRRVLLRVLAP--PEARAETAEIVESLMGRKPELRFRFIQDHASSVQELD 652 >gi|194426352|ref|ZP_03058907.1| DNA topoisomerase IV, B subunit [Escherichia coli B171] gi|194415660|gb|EDX31927.1| DNA topoisomerase IV, B subunit [Escherichia coli B171] gi|323163082|gb|EFZ48915.1| DNA topoisomerase IV, B subunit [Escherichia coli E128010] Length = 630 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTQPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|301325620|ref|ZP_07219086.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1] gi|300847592|gb|EFK75352.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1] Length = 630 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|330814224|ref|YP_004358463.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063] gi|327487319|gb|AEA81724.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063] Length = 649 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 315/650 (48%), Positives = 430/650 (66%), Gaps = 7/650 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NY A I +LEGL PVR RPGMYIGGTDE A HHL +E+IDN MDEV+AG A+ I Sbjct: 3 TKKNNYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEIIDNCMDEVVAGEASEIT 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157 V L+ NG LTV+DNGRGIP++ HPK NKS LE+++TTLH+GGKF ++ Y S GLHGV Sbjct: 63 VILNKNGSLTVMDNGRGIPIDKHPK-KNKSALEVVMTTLHSGGKFKEDGVYTTSAGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS ++ V V ++ I Q++SRG PL+ L +K + GTR+TF PD +IFG Sbjct: 122 GLSVVNALSSKMKVEVFKKKKIHFQEYSRGKPLNKLAQKGTYPSPHGTRVTFLPDDQIFG 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTK 276 F ++ + ++KA+L VK W CDK + + K IP K+ ++P GL+ YL+++ Sbjct: 182 KDLIFLPIKIYETCRNKAFLFKGVKIHWECDKSLLSRKENIPNKDTLFYPEGLEQYLKSE 241 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLR 335 L N + + + K + + +G VE I W + N S+ NT+ T GGTHESG R Sbjct: 242 LSNAKKVHDKFCSLKGDFQD-KKGKVELVIQWHDNKNNFTKSFANTVPTSNGGTHESGFR 300 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 + + I+KYA+L NK I +D+ +A I+SVFI PEF GQTK KL S + Sbjct: 301 GGVAKAIRKYAKLKNNKTVIKASQEDIFSNASYIVSVFIGNPEFEGQTKNKLSSSFVLKY 360 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++ F+ +L +N A +L ++ E+ ER V R+T+ RK+RLPGKLAD Sbjct: 361 CDQSVSILFEDWLNRNSKAAKSILTFIEEKIRERNLYELNNNVERQTSFRKIRLPGKLAD 420 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + GTELFIVEGDSAGGSAKQAR+R QA+LPLRGKILNV ++ + KI N +I + Sbjct: 421 CASDKTEGTELFIVEGDSAGGSAKQARDRYTQAILPLRGKILNVKNSNTAKILANNEIGN 480 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+QALGC+ ++Y +DLRYEK+IIMTDADVDG HI++LLLTFF+ EM +LI+ LF+ Sbjct: 481 LLQALGCQRGNKYVRKDLRYEKIIIMTDADVDGDHISTLLLTFFFIEMPELIKDGRLFMA 540 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL++I+ G ++ Y D++ K KI++ FKK+ KIEI RFKGLGEM+ +QLKET M+ Sbjct: 541 VPPLYKISSGAQTFYVRDDKAKDKIVKSFKKN--AKIEIGRFKGLGEMMPAQLKETTMNK 598 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R L++V + + K T IN LMG AD R KFI E A I ++ Sbjct: 599 ETRNLIKVSVPTNKIKYKVTSKLINDLMGKDADLRLKFISENAGKILNLD 648 >gi|315107489|gb|EFT79465.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1] Length = 685 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 366/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E +++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVQKSQAAAQARVAARKARDLARNRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|327334567|gb|EGE76278.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1] Length = 685 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|315651450|ref|ZP_07904473.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] gi|315486270|gb|EFU76629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] Length = 637 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 250/653 (38%), Positives = 349/653 (53%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +LEGLE VR+RPGMYIGG K L+HL E++DN++DE +AGY I V+L Sbjct: 2 QDYNAGSITVLEGLEAVRVRPGMYIGGVGVKGLNHLIYEIMDNSIDEHLAGYCKNIWVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G TV D+GRGIPVE H K S ++L+TLHAGGKFDN +Y+ SGGLHGVG SV Sbjct: 62 NADGSCTVRDDGRGIPVEMHQK--GVSAERVVLSTLHAGGKFDNESYKTSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-----KEKVRNKRGTRITFRPDPKIF 216 VNALS L + + R I ++ RG+P+ L+K K + GT ITF PD IF Sbjct: 120 VNALSSFLDIKIYRGRYIHHDRYERGVPVIELKKGLLPTVGKTKE-SGTEITFLPDDTIF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F A L AYL+ + + +E E++ ++ P G+ Y++ Sbjct: 179 EV-TKFRADWLKSRMHESAYLNPGLILHFINKRE-----NEYEEKIYHEPEGIVAYVKEL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 + + ++ + I K VE AI + + E +CN I T EGGTH G + Sbjct: 233 NKGKEVMHAPISY----KGVCDNIEVEAAIQFVDAFEENILGFCNNIFTQEGGTHIVGFK 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 T I YA + + D I+S+ +P F GQTKTKL S DA Sbjct: 289 TKFTGLINTYARELGILKDKDSNFTGADTRNGMTAIVSIKHPDPMFEGQTKTKLASADAT 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R V D Y +N ++ + ++ R + + + GKL Sbjct: 349 RAVLTVTGDELTRYFDRNVDVVKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFESNGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+C E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N +I Sbjct: 409 ANCESKDPSKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEI 468 Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ GC + + LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 469 KTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYD 528 Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H+++ PPLF++ + + VY +DE K LE+++K K + R+KGLGEM A QL Sbjct: 529 GHVYIAMPPLFKVVPKRGEGVYLYDE----KALEDYRKKHKDNFTLQRYKGLGEMDAEQL 584 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 ET +D +R L +VEI + + LMG+ R FI E A Sbjct: 585 WETTLDPERRVLKKVEIED----ARLASEITELLMGSDVTPRRNFIHEHAREA 633 >gi|313771057|gb|EFS37023.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1] gi|313792559|gb|EFS40645.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1] gi|313803561|gb|EFS44743.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2] gi|313811778|gb|EFS49492.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1] gi|313814213|gb|EFS51927.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1] gi|313832312|gb|EFS70026.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1] gi|313832772|gb|EFS70486.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1] gi|313839631|gb|EFS77345.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1] gi|314963864|gb|EFT07964.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1] gi|314975206|gb|EFT19301.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1] gi|314977620|gb|EFT21715.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1] gi|314985195|gb|EFT29287.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1] gi|315079002|gb|EFT51014.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2] gi|315081489|gb|EFT53465.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1] gi|315097154|gb|EFT69130.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1] gi|327332508|gb|EGE74243.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2] gi|327446714|gb|EGE93368.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA2] gi|327448844|gb|EGE95498.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1] gi|327457406|gb|EGF04061.1| DNA gyrase, B subunit [Propionibacterium acnes HL092PA1] gi|328759820|gb|EGF73411.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1] Length = 685 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|331001824|ref|ZP_08325346.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412798|gb|EGG92181.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon 107 str. F0167] Length = 637 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 351/653 (53%), Gaps = 34/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +LEGLE VR+RPGMYIGG K L+HL E++DN++DE +AGY I V+L Sbjct: 2 QDYNAGSITVLEGLEAVRVRPGMYIGGVGVKGLNHLIYEIMDNSIDEHLAGYCKNIWVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G TV D+GRGIPVE H K S ++L+TLHAGGKFDN++Y+ SGGLHGVG SV Sbjct: 62 NADGSCTVKDDGRGIPVEMHQK--GISAERVVLSTLHAGGKFDNASYKTSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK-----KEKVRNKRGTRITFRPDPKIF 216 VNALSD L + ++R I ++ +GIP+ L+K K + GT ITF PD IF Sbjct: 120 VNALSDFLDIKISRDGYIHHDRYEKGIPVIELKKGLLPTIGKTKE-SGTEITFLPDNTIF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F A L AYL+ + + +E + FY P G+ Y++ Sbjct: 179 EV-TKFKAEWLKSRMHESAYLNPGLMLHFINLRENEYEERT-----FYEPDGIVAYVKEL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 + + ++ + I K G VE AI + + E +CN I T EGGTH +G + Sbjct: 233 NKGKEVMHAPISY-KGICDGI---DVEIAIQFVDAFEENILGFCNNIFTQEGGTHIAGFK 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 T I YA + + D I+S+ P F GQTKTKL S DA Sbjct: 289 TKFTGLINTYARDLGVLKDKDSNFTGADTRNGMTAIISIKHPNPMFEGQTKTKLASADAT 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 R V D + +N ++ + ++ R + + + GKL Sbjct: 349 RAVLTVTGDELTRFFDRNVDVIKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFESNGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+C E+FIVEGDSAGGSAK ARNR+ QA+LP+RGKILNV A +K+ N +I Sbjct: 409 ANCESKDPSKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEI 468 Query: 514 MDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ GC + + LRY+K+I+MTDADVDG+HI +LLLTF Y+ M +LI Sbjct: 469 KTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYD 528 Query: 570 KHLFLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H+++ PPLF++ + + +Y +DE K LE++KK K + R+KGLGEM A QL Sbjct: 529 GHVYIAMPPLFKVVPKRGEGIYLYDE----KALEDYKKKHKDNFTLQRYKGLGEMDAEQL 584 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 ET +D +R L +VEI + + LMG+ R FI E A Sbjct: 585 WETTLDPERRVLKKVEIED----ARLASEVTELLMGSDVAPRRNFIHEHAREA 633 >gi|74313568|ref|YP_311987.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046] gi|73857045|gb|AAZ89752.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046] Length = 630 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPNSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|289424273|ref|ZP_06426056.1| DNA gyrase, B subunit [Propionibacterium acnes SK187] gi|295129538|ref|YP_003580201.1| DNA gyrase, B subunit [Propionibacterium acnes SK137] gi|289154970|gb|EFD03652.1| DNA gyrase, B subunit [Propionibacterium acnes SK187] gi|291375904|gb|ADD99758.1| DNA gyrase, B subunit [Propionibacterium acnes SK137] Length = 690 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 35 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 95 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687 Query: 684 VG 685 + Sbjct: 688 LD 689 >gi|148259050|ref|YP_001233177.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5] gi|146400731|gb|ABQ29258.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5] Length = 653 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 341/656 (51%), Positives = 452/656 (68%), Gaps = 7/656 (1%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + F + +Y A I +LEGLEPVR RPGMYIGGTD+ A+HHL +E++DNAMDE +A Sbjct: 2 TDLFEQAAGQASYSAKDIEVLEGLEPVRRRPGMYIGGTDDAAMHHLAAELLDNAMDEAVA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A++IE++L LTV DNGRGIPV+ HPKF +KS LE+ILTTLH+GGKF Y S Sbjct: 62 GHASIIEMTLAPGNLLTVRDNGRGIPVDPHPKFRDKSALEVILTTLHSGGKFAGKAYATS 121 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNAL++ L V VAR+ T++ Q ++RG PL+ L N+RGT I F P Sbjct: 122 GGLHGVGSSVVNALAERLEVEVAREKTLWKQDYARGKPLTKLVNAGATPNRRGTLIRFVP 181 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD-KEIAEKYGIPEKEEFYFPGGLK 270 DP+IFGD F ARL +M +SKAYL V+ W+CD IA +P + E +FPGGL Sbjct: 182 DPEIFGD-KKFSPARLYRMCRSKAYLFRGVRIRWTCDAALIAAGADVPAQAELHFPGGLA 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGT 329 L +L + + ++ G+ + G +EWA AW E +YCNTI T GGT Sbjct: 241 DSLAEELGAAPKLVAPVWAGQADLPDDA-GRIEWACAWLEAGEATLSTYCNTIPTTLGGT 299 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE+G R AL +G++ + E NKRA I ++D + LS+FIR+P+F GQTK KL S Sbjct: 300 HEAGFRAALLKGLRGFGEQRSNKRAAVITAEDATGALAAKLSLFIRDPQFQGQTKEKLTS 359 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 +AQ+ E ALRD F+H+L +P A LL +VIER+EER+RRR+Q++ RK+A R+LRL Sbjct: 360 PEAQKLTEAALRDRFEHFLTGDPANADNLLAFVIERAEERIRRREQKDTPRKSATRRLRL 419 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DCS+ TE+F+VEGDSAGGSAKQARNR QAVLPLRGKILNVASA +EK+R Sbjct: 420 PGKLTDCSRESREDTEIFLVEGDSAGGSAKQARNRETQAVLPLRGKILNVASASTEKLRQ 479 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 NQ++ DL++ALGC +++ + LRY ++IIMTDADVDGAHIASLL+TFFY+E+ +LI Sbjct: 480 NQELKDLIEALGCGVGDRFQIDALRYGRIIIMTDADVDGAHIASLLMTFFYRELPELIRG 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H++L PPL+R+TQG KSVYA D+ + ++++ K K+EISRFKGLGEM + LK Sbjct: 540 GHVYLAQPPLYRLTQGGKSVYAMDDGERDRLVKTAFK-ANAKVEISRFKGLGEMPPAILK 598 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD +R LLRV + +T + + LMG K + RF+FIQ+ AS + ++ Sbjct: 599 ETTMDPKRRVLLRVLAP--PEARAETAEIVESLMGRKPELRFRFIQDHASSVQELD 652 >gi|313806865|gb|EFS45363.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2] gi|313817652|gb|EFS55366.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2] gi|313821523|gb|EFS59237.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1] gi|313824533|gb|EFS62247.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2] gi|313826201|gb|EFS63915.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1] gi|314926324|gb|EFS90155.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3] gi|314961671|gb|EFT05772.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2] gi|314980248|gb|EFT24342.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2] gi|314987104|gb|EFT31196.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2] gi|314990695|gb|EFT34786.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3] gi|315083089|gb|EFT55065.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2] gi|315086622|gb|EFT58598.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3] gi|315088023|gb|EFT59999.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1] gi|327333681|gb|EGE75398.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3] gi|327444460|gb|EGE91114.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2] gi|328757967|gb|EGF71583.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1] Length = 685 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|289427505|ref|ZP_06429218.1| DNA gyrase, B subunit [Propionibacterium acnes J165] gi|289159435|gb|EFD07626.1| DNA gyrase, B subunit [Propionibacterium acnes J165] Length = 690 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 35 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 95 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 154 GVGSSVVNALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687 Query: 684 VG 685 + Sbjct: 688 LD 689 >gi|16130926|ref|NP_417502.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|82545287|ref|YP_409234.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227] gi|89109800|ref|AP_003580.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr. W3110] gi|157159021|ref|YP_001464491.1| DNA topoisomerase IV subunit B [Escherichia coli E24377A] gi|157162506|ref|YP_001459824.1| DNA topoisomerase IV subunit B [Escherichia coli HS] gi|170018716|ref|YP_001723670.1| DNA topoisomerase IV subunit B [Escherichia coli ATCC 8739] gi|170082573|ref|YP_001731893.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr. DH10B] gi|188493014|ref|ZP_03000284.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638] gi|191167538|ref|ZP_03029350.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A] gi|193062072|ref|ZP_03043168.1| DNA topoisomerase IV, B subunit [Escherichia coli E22] gi|193067388|ref|ZP_03048356.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019] gi|194436719|ref|ZP_03068819.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1] gi|209920502|ref|YP_002294586.1| DNA topoisomerase IV subunit B [Escherichia coli SE11] gi|218555600|ref|YP_002388513.1| DNA topoisomerase IV subunit B [Escherichia coli IAI1] gi|218696736|ref|YP_002404403.1| DNA topoisomerase IV subunit B [Escherichia coli 55989] gi|218701804|ref|YP_002409433.1| DNA topoisomerase IV subunit B [Escherichia coli IAI39] gi|218706657|ref|YP_002414176.1| DNA topoisomerase IV subunit B [Escherichia coli UMN026] gi|238902143|ref|YP_002927939.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952] gi|253772132|ref|YP_003034963.1| DNA topoisomerase IV subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162979|ref|YP_003046087.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606] gi|256019052|ref|ZP_05432917.1| DNA topoisomerase IV subunit B [Shigella sp. D9] gi|256024388|ref|ZP_05438253.1| DNA topoisomerase IV subunit B [Escherichia sp. 4_1_40B] gi|260845784|ref|YP_003223562.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str. 12009] gi|260857163|ref|YP_003231054.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str. 11368] gi|260869784|ref|YP_003236186.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str. 11128] gi|293406645|ref|ZP_06650571.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412] gi|293416475|ref|ZP_06659114.1| DNA topoisomerase IV [Escherichia coli B185] gi|293449370|ref|ZP_06663791.1| DNA topoisomerase IV [Escherichia coli B088] gi|298382385|ref|ZP_06991982.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302] gi|300821623|ref|ZP_07101769.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7] gi|300901410|ref|ZP_07119496.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1] gi|300905833|ref|ZP_07123566.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1] gi|300916859|ref|ZP_07133562.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1] gi|300923689|ref|ZP_07139716.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1] gi|300931916|ref|ZP_07147213.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1] gi|300950762|ref|ZP_07164649.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1] gi|300958414|ref|ZP_07170554.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1] gi|301020021|ref|ZP_07184153.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1] gi|301021821|ref|ZP_07185784.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1] gi|301301931|ref|ZP_07208065.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1] gi|301643601|ref|ZP_07243642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1] gi|307139719|ref|ZP_07499075.1| DNA topoisomerase IV subunit B [Escherichia coli H736] gi|307310343|ref|ZP_07589991.1| DNA topoisomerase IV, B subunit [Escherichia coli W] gi|312972707|ref|ZP_07786880.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70] gi|331643730|ref|ZP_08344861.1| DNA topoisomerase IV, B subunit [Escherichia coli H736] gi|331654635|ref|ZP_08355635.1| DNA topoisomerase IV, B subunit [Escherichia coli M718] gi|331664646|ref|ZP_08365552.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143] gi|331669944|ref|ZP_08370789.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271] gi|331679108|ref|ZP_08379780.1| DNA topoisomerase IV, B subunit [Escherichia coli H591] gi|331684685|ref|ZP_08385277.1| DNA topoisomerase IV, B subunit [Escherichia coli H299] gi|464346|sp|P20083|PARE_ECOLI RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|882560|gb|AAA69198.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. MG1655] gi|1789408|gb|AAC76066.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|81246698|gb|ABB67406.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227] gi|85675833|dbj|BAE77086.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K12 substr. W3110] gi|157068186|gb|ABV07441.1| DNA topoisomerase IV, B subunit [Escherichia coli HS] gi|157081051|gb|ABV20759.1| DNA topoisomerase IV, B subunit [Escherichia coli E24377A] gi|169753644|gb|ACA76343.1| DNA topoisomerase IV, B subunit [Escherichia coli ATCC 8739] gi|169890408|gb|ACB04115.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr. DH10B] gi|188488213|gb|EDU63316.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638] gi|190902395|gb|EDV62132.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A] gi|192932292|gb|EDV84890.1| DNA topoisomerase IV, B subunit [Escherichia coli E22] gi|192959345|gb|EDV89780.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019] gi|194424201|gb|EDX40188.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1] gi|209913761|dbj|BAG78835.1| DNA topoisomerase IV subunit B [Escherichia coli SE11] gi|218353468|emb|CAU99567.1| DNA topoisomerase IV, subunit B [Escherichia coli 55989] gi|218362368|emb|CAQ99992.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI1] gi|218371790|emb|CAR19643.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI39] gi|218433754|emb|CAR14671.1| DNA topoisomerase IV, subunit B [Escherichia coli UMN026] gi|238860847|gb|ACR62845.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952] gi|242378582|emb|CAQ33369.1| topoisomerase IV subunit B, subunit of topoisomerase IV [Escherichia coli BL21(DE3)] gi|253323176|gb|ACT27778.1| DNA topoisomerase IV, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974880|gb|ACT40551.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606] gi|253979036|gb|ACT44706.1| DNA topoisomerase IV subunit B [Escherichia coli BL21(DE3)] gi|257755812|dbj|BAI27314.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str. 11368] gi|257760931|dbj|BAI32428.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str. 12009] gi|257766140|dbj|BAI37635.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str. 11128] gi|260447934|gb|ACX38356.1| DNA topoisomerase IV, B subunit [Escherichia coli DH1] gi|291322460|gb|EFE61889.1| DNA topoisomerase IV [Escherichia coli B088] gi|291426651|gb|EFE99683.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412] gi|291431831|gb|EFF04814.1| DNA topoisomerase IV [Escherichia coli B185] gi|298277525|gb|EFI19041.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302] gi|299881978|gb|EFI90189.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1] gi|300314923|gb|EFJ64707.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1] gi|300355182|gb|EFJ71052.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1] gi|300397837|gb|EFJ81375.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1] gi|300402302|gb|EFJ85840.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1] gi|300415829|gb|EFJ99139.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1] gi|300420056|gb|EFK03367.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1] gi|300449932|gb|EFK13552.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1] gi|300460339|gb|EFK23832.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1] gi|300525761|gb|EFK46830.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7] gi|300842912|gb|EFK70672.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1] gi|301077985|gb|EFK92791.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1] gi|306909238|gb|EFN39733.1| DNA topoisomerase IV, B subunit [Escherichia coli W] gi|309703462|emb|CBJ02802.1| putative DNA topoisomerase 4 subunit B [Escherichia coli ETEC H10407] gi|310332649|gb|EFP99862.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70] gi|315062340|gb|ADT76667.1| DNA topoisomerase IV, subunit B [Escherichia coli W] gi|315137623|dbj|BAJ44782.1| DNA topoisomerase IV subunit B [Escherichia coli DH1] gi|315256940|gb|EFU36908.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 85-1] gi|315617300|gb|EFU97908.1| DNA topoisomerase IV, B subunit [Escherichia coli 3431] gi|320201942|gb|EFW76517.1| Topoisomerase IV subunit B [Escherichia coli EC4100B] gi|323154726|gb|EFZ40925.1| DNA topoisomerase IV, B subunit [Escherichia coli EPECa14] gi|323168127|gb|EFZ53814.1| DNA topoisomerase IV, B subunit [Shigella sonnei 53G] gi|323173726|gb|EFZ59355.1| DNA topoisomerase IV, B subunit [Escherichia coli LT-68] gi|323178735|gb|EFZ64311.1| DNA topoisomerase IV, B subunit [Escherichia coli 1180] gi|323188530|gb|EFZ73815.1| DNA topoisomerase IV, B subunit [Escherichia coli RN587/1] gi|323377073|gb|ADX49341.1| DNA topoisomerase IV, B subunit [Escherichia coli KO11] gi|323935968|gb|EGB32263.1| DNA topoisomerase IV [Escherichia coli E1520] gi|323941871|gb|EGB38050.1| DNA topoisomerase IV [Escherichia coli E482] gi|323946728|gb|EGB42748.1| DNA topoisomerase IV [Escherichia coli H120] gi|323960923|gb|EGB56542.1| DNA topoisomerase IV [Escherichia coli H489] gi|323971845|gb|EGB67070.1| DNA topoisomerase IV [Escherichia coli TA007] gi|324018128|gb|EGB87347.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 117-3] gi|324119640|gb|EGC13521.1| DNA topoisomerase IV [Escherichia coli E1167] gi|331037201|gb|EGI09425.1| DNA topoisomerase IV, B subunit [Escherichia coli H736] gi|331048017|gb|EGI20094.1| DNA topoisomerase IV, B subunit [Escherichia coli M718] gi|331058577|gb|EGI30558.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143] gi|331062857|gb|EGI34771.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271] gi|331073173|gb|EGI44496.1| DNA topoisomerase IV, B subunit [Escherichia coli H591] gi|331078300|gb|EGI49506.1| DNA topoisomerase IV, B subunit [Escherichia coli H299] gi|332102505|gb|EGJ05851.1| DNA topoisomerase IV subunit B [Shigella sp. D9] Length = 630 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|325498583|gb|EGC96442.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ECD227] Length = 630 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|50841503|ref|YP_054730.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202] gi|50839105|gb|AAT81772.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202] Length = 690 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 35 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 95 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSD 213 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 451 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 631 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687 Query: 684 VG 685 + Sbjct: 688 LD 689 >gi|15833172|ref|NP_311945.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. Sakai] gi|168747459|ref|ZP_02772481.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168754001|ref|ZP_02779008.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168760192|ref|ZP_02785199.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168767054|ref|ZP_02792061.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168773312|ref|ZP_02798319.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168781907|ref|ZP_02806914.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168785905|ref|ZP_02810912.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC869] gi|168797623|ref|ZP_02822630.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC508] gi|195937177|ref|ZP_03082559.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. EC4024] gi|208807253|ref|ZP_03249590.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208811986|ref|ZP_03253315.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208820772|ref|ZP_03261092.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209399667|ref|YP_002272509.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4115] gi|217327420|ref|ZP_03443503.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. TW14588] gi|254794987|ref|YP_003079824.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. TW14359] gi|261228047|ref|ZP_05942328.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str. FRIK2000] gi|261254903|ref|ZP_05947436.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str. FRIK966] gi|291284413|ref|YP_003501231.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str. CB9615] gi|13363391|dbj|BAB37341.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. Sakai] gi|187770751|gb|EDU34595.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188017779|gb|EDU55901.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4113] gi|189000532|gb|EDU69518.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189358750|gb|EDU77169.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189363670|gb|EDU82089.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189369291|gb|EDU87707.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189373910|gb|EDU92326.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC869] gi|189379786|gb|EDU98202.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC508] gi|208727054|gb|EDZ76655.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208733263|gb|EDZ81950.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208740895|gb|EDZ88577.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209161067|gb|ACI38500.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209759538|gb|ACI78081.1| DNA topoisomerase IV subunit B [Escherichia coli] gi|209759540|gb|ACI78082.1| DNA topoisomerase IV subunit B [Escherichia coli] gi|209759542|gb|ACI78083.1| DNA topoisomerase IV subunit B [Escherichia coli] gi|209759544|gb|ACI78084.1| DNA topoisomerase IV subunit B [Escherichia coli] gi|209759546|gb|ACI78085.1| DNA topoisomerase IV subunit B [Escherichia coli] gi|217319787|gb|EEC28212.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str. TW14588] gi|254594387|gb|ACT73748.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str. TW14359] gi|290764286|gb|ADD58247.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str. CB9615] gi|320189386|gb|EFW64045.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. EC1212] gi|320640109|gb|EFX09681.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. G5101] gi|320645406|gb|EFX14415.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str. 493-89] gi|320650718|gb|EFX19175.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str. H 2687] gi|320656412|gb|EFX24319.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661785|gb|EFX29193.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320666937|gb|EFX33913.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. LSU-61] gi|326337739|gb|EGD61573.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1125] gi|326347303|gb|EGD71028.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1044] Length = 630 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|26249607|ref|NP_755647.1| DNA topoisomerase IV subunit B [Escherichia coli CFT073] gi|82778361|ref|YP_404710.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197] gi|91212456|ref|YP_542442.1| DNA topoisomerase IV subunit B [Escherichia coli UTI89] gi|110643276|ref|YP_671006.1| DNA topoisomerase IV subunit B [Escherichia coli 536] gi|117625344|ref|YP_854666.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1] gi|187730460|ref|YP_001881797.1| DNA topoisomerase IV subunit B [Shigella boydii CDC 3083-94] gi|191172547|ref|ZP_03034087.1| DNA topoisomerase IV, B subunit [Escherichia coli F11] gi|215488363|ref|YP_002330794.1| DNA topoisomerase IV subunit B [Escherichia coli O127:H6 str. E2348/69] gi|218560115|ref|YP_002393028.1| DNA topoisomerase IV subunit B [Escherichia coli S88] gi|218691333|ref|YP_002399545.1| DNA topoisomerase IV subunit B [Escherichia coli ED1a] gi|227887749|ref|ZP_04005554.1| DNA topoisomerase IV subunit B [Escherichia coli 83972] gi|237706211|ref|ZP_04536692.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA] gi|300973274|ref|ZP_07172113.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1] gi|300993488|ref|ZP_07180429.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1] gi|301048139|ref|ZP_07195176.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1] gi|306816617|ref|ZP_07450749.1| DNA topoisomerase IV subunit B [Escherichia coli NC101] gi|309785325|ref|ZP_07679956.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617] gi|312968625|ref|ZP_07782834.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75] gi|331648830|ref|ZP_08349918.1| DNA topoisomerase IV, B subunit [Escherichia coli M605] gi|331659322|ref|ZP_08360264.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206] gi|26110015|gb|AAN82220.1|AE016766_308 Topoisomerase IV subunit B [Escherichia coli CFT073] gi|81242509|gb|ABB63219.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197] gi|91074030|gb|ABE08911.1| topoisomerase IV subunit B [Escherichia coli UTI89] gi|110344868|gb|ABG71105.1| topoisomerase IV subunit B [Escherichia coli 536] gi|115514468|gb|ABJ02543.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1] gi|168812185|gb|ACA30266.1| ParE [Shigella boydii] gi|187427452|gb|ACD06726.1| DNA topoisomerase IV, B subunit [Shigella boydii CDC 3083-94] gi|190907215|gb|EDV66814.1| DNA topoisomerase IV, B subunit [Escherichia coli F11] gi|215266435|emb|CAS10873.1| DNA topoisomerase IV, subunit B [Escherichia coli O127:H6 str. E2348/69] gi|218366884|emb|CAR04654.1| DNA topoisomerase IV, subunit B [Escherichia coli S88] gi|218428897|emb|CAR09845.2| DNA topoisomerase IV, subunit B [Escherichia coli ED1a] gi|222034762|emb|CAP77504.1| DNA topoisomerase 4 subunit B [Escherichia coli LF82] gi|226899251|gb|EEH85510.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA] gi|227835145|gb|EEJ45611.1| DNA topoisomerase IV subunit B [Escherichia coli 83972] gi|294490177|gb|ADE88933.1| DNA topoisomerase IV, B subunit [Escherichia coli IHE3034] gi|300299975|gb|EFJ56360.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1] gi|300305085|gb|EFJ59605.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1] gi|300410854|gb|EFJ94392.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1] gi|305850182|gb|EFM50641.1| DNA topoisomerase IV subunit B [Escherichia coli NC101] gi|307555134|gb|ADN47909.1| topoisomerase IV subunit B [Escherichia coli ABU 83972] gi|307625356|gb|ADN69660.1| DNA topoisomerase IV subunit B [Escherichia coli UM146] gi|308926445|gb|EFP71921.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617] gi|312286843|gb|EFR14754.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75] gi|312947600|gb|ADR28427.1| DNA topoisomerase IV subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|315288799|gb|EFU48197.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 110-3] gi|315295079|gb|EFU54416.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 153-1] gi|315297702|gb|EFU56979.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 16-3] gi|320184185|gb|EFW59001.1| Topoisomerase IV subunit B [Shigella flexneri CDC 796-83] gi|323951438|gb|EGB47313.1| DNA topoisomerase IV [Escherichia coli H252] gi|323957810|gb|EGB53524.1| DNA topoisomerase IV [Escherichia coli H263] gi|324011956|gb|EGB81175.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 60-1] gi|330909096|gb|EGH37610.1| topoisomerase 4 subunit B [Escherichia coli AA86] gi|331042577|gb|EGI14719.1| DNA topoisomerase IV, B subunit [Escherichia coli M605] gi|331053904|gb|EGI25933.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206] gi|332092196|gb|EGI97274.1| DNA topoisomerase IV, B subunit [Shigella boydii 3594-74] Length = 630 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|313835161|gb|EFS72875.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2] gi|314929137|gb|EFS92968.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1] gi|314970916|gb|EFT15014.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3] Length = 690 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/662 (37%), Positives = 361/662 (54%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 35 PPMTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 95 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q F+ G P PLE+ E + GT + F+P Sbjct: 154 GVGSSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCEGTTVRFQPSD 213 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF F L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 214 EIFDAIV-FGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDY 272 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYTTSVHTFANAINTIEGGAHE 331 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ L + + +NP E ++ ++ R+ RK R++ R + Sbjct: 392 AEAKSFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGST 451 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + H K + I R+KGLGEM Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLPQINPIQRYKGLGEM 631 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687 Query: 684 VG 685 + Sbjct: 688 LD 689 >gi|30064380|ref|NP_838551.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T] gi|56480243|ref|NP_708841.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301] gi|30042637|gb|AAP18361.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T] gi|56383794|gb|AAN44548.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301] gi|281602417|gb|ADA75401.1| DNA topoisomerase IV subunit B [Shigella flexneri 2002017] gi|313648143|gb|EFS12589.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2a str. 2457T] Length = 630 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQGLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|256823911|ref|YP_003147871.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547] gi|256687304|gb|ACV05106.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547] Length = 701 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 239/702 (34%), Positives = 360/702 (51%), Gaps = 56/702 (7%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + +YDASS+++LEGLE VR RPGMYIG T E+ LHHL E++DNA+DE +AG+ Sbjct: 5 PIQTDQQAPSYDASSLQVLEGLEAVRKRPGMYIGSTGERGLHHLVWEIVDNAVDEHLAGH 64 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ IEV++ + + VVDNGRGIP + H K S +E++LT LHAGGKF +Y +SGG Sbjct: 65 ADRIEVTILPDNAIRVVDNGRGIPTDVHAK-EGISGVELVLTQLHAGGKFGGDSYAVSGG 123 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPD 212 LHGVG SVVNALS V V ++ +F Q F+ G+P +PL K E+ + GT IT+ P Sbjct: 124 LHGVGSSVVNALSSRFEVEVRQKGHVFRQSFTVGVPDAPLSKDEEIAEDVTGTTITYWPS 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG---------------- 256 +IF D L Q +L+ + + ++ Sbjct: 184 AEIFDTTV-IDFETLRARFQQTCFLNKGLTIQLTDERPRVTDADDEGLDDVDTDIAEGLE 242 Query: 257 ------------------------IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292 P + + GL Y++ ++ Sbjct: 243 EHEDGTPIEDGQPDADQPATAAATKPRTVTYRYDDGLLDYVRHLNNSKKTQPVNDEIIAF 302 Query: 293 EKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 E + + R E A+ W + +Y N++ T EGGTHE G R ALTR + ++A + Sbjct: 303 ETEDSERMLQCEVAMQWTSSYSESVHTYANSVNTHEGGTHEEGFRAALTRLVNEFARANK 362 Query: 351 --NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 ++ ++ +D+ ++SV + EP+F GQTKTKL + + + V+ A+ D H+L Sbjct: 363 LLKEKDPALTGEDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQRAMADQLGHWL 422 Query: 409 VQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELF 467 +P E ++ ++ ++ RL RK RE R+ + L KL DC N +E+F Sbjct: 423 EAHPGEGKAIVGKAVQAAQARLAARKAREATRRKGLLESGGLAAKLKDCQSNDPTVSEIF 482 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSAGGSA RN NQA+LPLRGKILNV A ++I +N ++ L+ + G + Sbjct: 483 IVEGDSAGGSAIAGRNPFNQAILPLRGKILNVEKARLDRILSNTEVQALISSFGTGIGEE 542 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ-GT 586 + RY K+++M DADVDG HI +LLLT ++ M LIE +++L PPL+R+ Sbjct: 543 FDITRARYHKIVLMADADVDGMHIRTLLLTLLFRFMKPLIEHGYVYLAQPPLYRLKWTNA 602 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRV 643 + +A + + + E G+ + + R+KGLGEM +L ET MD + R L +V Sbjct: 603 EHDFAFTDRERDALTEAGVAKGRRLPKENGVQRYKGLGEMNYQELWETTMDPDNRVLRQV 662 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ + LMG + R FIQ A + + Sbjct: 663 TMDD----AAAADQVFSVLMGEDVESRRSFIQRNAHDVRFLD 700 >gi|324005383|gb|EGB74602.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 57-2] Length = 630 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGETVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|293412409|ref|ZP_06655132.1| DNA topoisomerase IV [Escherichia coli B354] gi|291469180|gb|EFF11671.1| DNA topoisomerase IV [Escherichia coli B354] Length = 630 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|15805931|ref|NP_294630.1| DNA gyrase subunit B [Deinococcus radiodurans R1] gi|6458625|gb|AAF10481.1|AE001943_1 DNA gyrase, subunit B [Deinococcus radiodurans R1] Length = 663 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 253/660 (38%), Positives = 365/660 (55%), Gaps = 25/660 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +D+Y+A I +LEG++ VR RPGMY+ GGT H L +E+IDN +DE +AG+A I+ Sbjct: 9 TADDYNADQISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFAGEIQ 68 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L +G TV D+GRGIPV+ K + +E+I + LHAGGKF Y++SGGLHGVG Sbjct: 69 IVLHADGSATVTDDGRGIPVDIM-KSKGRPAIEVIFSELHAGGKFGQGAYKVSGGLHGVG 127 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIF 216 +VVNALS L VTV + + +F RG+ + PLE T+++F PDP IF Sbjct: 128 STVVNALSTYLDVTVNKHKQLHHIRFERGVLVQPLEVLGATPKDVKWSTKVSFHPDPTIF 187 Query: 217 GDK-AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 + FD R+ + AYL+G K ++ G ++E F+ GG+ + + Sbjct: 188 KEFDNQFDYLRIRNRLRELAYLTGL-KIVIRDERTELH-GGEIKEEVFHEKGGIANFARA 245 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 + + + + + V + A + I +Y N I T +GGT +G + Sbjct: 246 LVTDDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFK 305 Query: 336 VALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 A TR + KYA+ +A + DDL+ ++SV + +P+F Q K KL++ +AQ Sbjct: 306 TAYTRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQ 365 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V + + F +L +NP ++E E + R RK R++ R + LPGK Sbjct: 366 TAVNAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGK 425 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADCS +ELFIVEG+SAGGSAK R R QA+LPLRGKILNV A KI N + Sbjct: 426 LADCSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAE 485 Query: 513 IMDLVQALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 I L+ A+G ++ E+LRY K++IMTDAD+DG HI +LLLTFF++ M ++ Sbjct: 486 IRSLIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIV 545 Query: 568 EQKHLFLISPPLFRI-----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 EQ HL++ PPL++I T+ K VY E ++ + + K GK K EI RFKGLGE Sbjct: 546 EQGHLYIAQPPLYKITVGAQTKNNKGVYLFTNEELKEHVADAVKAGK-KYEIQRFKGLGE 604 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M A QL ET M+ R L RV I+ L + + LMG++ R FI+E A F + Sbjct: 605 MNAEQLWETTMNPETRVLKRVSIDD----LIIANEIFDALMGSEVAPRKDFIRENARFAE 660 >gi|320176204|gb|EFW51268.1| Topoisomerase IV subunit B [Shigella dysenteriae CDC 74-1112] Length = 630 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLMQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|73697709|gb|AAZ81471.1| DNA gyrase subunit B [Acholeplasma palmae] Length = 588 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 241/606 (39%), Positives = 347/606 (57%), Gaps = 21/606 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T E+ LHHL E++DN++DE +AGYA+ I V + + + V DNGRGIP Sbjct: 1 VRKRPGMYIGSTGERGLHHLVWEIVDNSIDEALAGYADTITVEVLKDNIIRVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V H K K +E ILTTLHAGGKFD S+Y++SGGLHGVG SVVNALS V V Sbjct: 61 VGIHHK-TGKPAVETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSSYFIVEVHVNG 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 I Q+F +G P++ L+ ++ GT ITF DP +F + +D L Q A+L Sbjct: 120 KIHKQRFEKGFPVTGLDIIGDTTHQ-GTVITFLADPDVFKETTIYDFETLRSRVQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + +K + D++ P +++ GGL Y+ ++ I++ F + E G Sbjct: 179 NRNIKITITDDRKE-----EPVSFTYHYEGGLLEYIDFLTGTKTKINANKFYAEKEVDGI 233 Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAI 355 T+E A+ + + + N I T EGG HE G ++AL R + KYA+ K+ Sbjct: 234 ---TLEVALQYTDSYATNLYSFTNNIPTHEGGMHEDGFKMALNRVLAKYAKDNNLLKKDE 290 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 ISDD I+SV +P+F GQTKTKL +++ ++ + + F+ YL++NP +A Sbjct: 291 PFISDDTREGLTAIISVKHPDPQFEGQTKTKLGNVEVRQIASQVVGETFERYLLENPTDA 350 Query: 416 TKLLEW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 +++ ++ R+ + RK+ + L KLADC +EL+IVEGDSA Sbjct: 351 KAIIDKSLLAARARIAARKAREATRRKSPLDALGFASKLADCRSKNPAISELYIVEGDSA 410 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQ R QA+LPLRGK+LNV A +K+ +N +I+ L+QA+G ++ E R Sbjct: 411 GGSAKQGRESEYQAILPLRGKVLNVEKARIDKVLSNNEILSLIQAIGTGIGEEFNPEKAR 470 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K++IMTDADVDGAHI +LLLTFF++ LI+ +++ PPL+++ G K Y +D+ Sbjct: 471 YHKIVIMTDADVDGAHIRTLLLTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDD 530 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E K LE+ GK + R+KGLGEM QL ET MD RTLL+V + + + Sbjct: 531 EALPKALEQLG----GKPSMQRYKGLGEMNPEQLWETTMDPETRTLLQVTMKDAI----E 582 Query: 655 TQDSIN 660 N Sbjct: 583 ADQVFN 588 >gi|300937487|ref|ZP_07152312.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1] gi|331674577|ref|ZP_08375337.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280] gi|300457479|gb|EFK20972.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1] gi|331068671|gb|EGI40066.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|170679703|ref|YP_001745304.1| DNA topoisomerase IV subunit B [Escherichia coli SMS-3-5] gi|170517421|gb|ACB15599.1| DNA topoisomerase IV, B subunit [Escherichia coli SMS-3-5] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVIGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|314965771|gb|EFT09870.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2] gi|315094452|gb|EFT66428.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1] gi|327328947|gb|EGE70707.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1] Length = 685 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + D+YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTTVDDSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|313765016|gb|EFS36380.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1] gi|313815427|gb|EFS53141.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1] gi|313828992|gb|EFS66706.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2] gi|314916223|gb|EFS80054.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4] gi|314917490|gb|EFS81321.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1] gi|314921826|gb|EFS85657.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3] gi|314930909|gb|EFS94740.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1] gi|314955295|gb|EFS99700.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1] gi|314959168|gb|EFT03270.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1] gi|314969073|gb|EFT13171.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1] gi|315099333|gb|EFT71309.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2] gi|315102327|gb|EFT74303.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1] gi|315109856|gb|EFT81832.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2] gi|327454261|gb|EGF00916.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA3] gi|328756019|gb|EGF69635.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1] gi|328758863|gb|EGF72479.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2] Length = 685 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|218550279|ref|YP_002384070.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ATCC 35469] gi|218357820|emb|CAQ90464.1| DNA topoisomerase IV, subunit B [Escherichia fergusonii ATCC 35469] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAVMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|320195188|gb|EFW69817.1| Topoisomerase IV subunit B [Escherichia coli WV_060327] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEISFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|323183615|gb|EFZ69012.1| DNA topoisomerase IV, B subunit [Escherichia coli 1357] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|309793595|ref|ZP_07688021.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7] gi|308122552|gb|EFO59814.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7] Length = 630 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLATQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|328905793|gb|EGG25569.1| DNA gyrase, B subunit [Propionibacterium sp. P08] Length = 681 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 246/662 (37%), Positives = 361/662 (54%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 26 PPMTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 85 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 86 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 144 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q F+ G P PLE+ E + GT + F+P Sbjct: 145 GVGSSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCEGTTVRFQPSD 204 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF F L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 205 EIFDAIV-FGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDY 263 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 264 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYTTSVHTFANAINTIEGGAHE 322 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 323 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 382 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ L + + +NP E ++ ++ R+ RK R++ R + Sbjct: 383 AEAKSFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGST 442 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 443 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 502 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 503 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 562 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + H K + I R+KGLGEM Sbjct: 563 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLPQINPIQRYKGLGEM 622 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 623 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 678 Query: 684 VG 685 + Sbjct: 679 LD 680 >gi|28897204|ref|NP_796809.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|153840089|ref|ZP_01992756.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810] gi|260363417|ref|ZP_05776267.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030] gi|260879174|ref|ZP_05891529.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034] gi|260898011|ref|ZP_05906507.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466] gi|260901428|ref|ZP_05909823.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037] gi|28805413|dbj|BAC58693.1| topoisomerase IV, subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|149746309|gb|EDM57374.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810] gi|308086337|gb|EFO36032.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466] gi|308094171|gb|EFO43866.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034] gi|308106489|gb|EFO44029.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037] gi|308112928|gb|EFO50468.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030] gi|328471973|gb|EGF42850.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus 10329] Length = 626 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 252/645 (39%), Positives = 358/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + ++Y+ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYQWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E FTG+ SY N I T +GGTH +GLR L Sbjct: 230 YPVLPEEPFTGEFSADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SEATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625 >gi|323978898|gb|EGB73978.1| DNA topoisomerase IV [Escherichia coli TW10509] Length = 630 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-EAFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|254038199|ref|ZP_04872257.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43] gi|300818795|ref|ZP_07099001.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1] gi|226839823|gb|EEH71844.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43] gi|300528580|gb|EFK49642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1] Length = 630 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAAQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|327456322|gb|EGF02977.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2] Length = 685 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 366/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTAVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS + E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSSEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + E+ HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|170765612|ref|ZP_02900423.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627] gi|170124758|gb|EDS93689.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627] Length = 630 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K A++R ++QE+ + Sbjct: 583 TRRLVQLTISD--EDDQRTDAVMDMLLAKKRAEDRRNWLQEKGDMAE 627 >gi|194431743|ref|ZP_03064034.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012] gi|194420099|gb|EDX36177.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012] gi|320180944|gb|EFW55865.1| Topoisomerase IV subunit B [Shigella boydii ATCC 9905] gi|332086688|gb|EGI91828.1| DNA topoisomerase IV, B subunit [Shigella boydii 5216-82] gi|332087296|gb|EGI92426.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 155-74] Length = 630 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKANVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|311742665|ref|ZP_07716474.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] gi|311314293|gb|EFQ84201.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] Length = 690 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 227/699 (32%), Positives = 340/699 (48%), Gaps = 44/699 (6%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + + + YDA ++ +LEGLE VR RPGMYIG TD + L H E+ Sbjct: 2 NSAAADRLGGPAGPPQEDPISTYDARNLLVLEGLEAVRKRPGMYIGSTDTRGLMHCVWEI 61 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDNA+DE + G+ + I V L +G + V D+GRGIPV+ K + +E++ T LHAGG Sbjct: 62 IDNAVDEALGGHCHHIRVVLHADGSVEVHDDGRGIPVDTERK-TGLTGVEVVFTKLHAGG 120 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-R 200 KF +Y +GGLHGVG SVVNALS+ L V V + ++ F+RG P PL K KV + Sbjct: 121 KFGGGSYVATGGLHGVGASVVNALSERLEVEVDKGGATWAMAFTRGAPEGPLTKIGKVAK 180 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GTRI + DP+IF A F L+ ++ ++L ++ ++ + Sbjct: 181 TRTGTRIRYWADPQIFIKGAEFSYTDLVTRSRQTSFLVPGLEIVIRDER-----TDEVRE 235 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEW 304 E F GG+ + + + + G+ + V+ Sbjct: 236 ETFLHSGGIAEFTEFLATDEPVTPVLRLQGEDTFTETVPVLDELGHMSPQDVERSLGVDV 295 Query: 305 AIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361 A+ W S+ N I T +GGTH G +TR + T+ + + DD Sbjct: 296 ALRWGTGYETDVRSFVNIISTPKGGTHVQGFERGMTRTFNDVLKTTRLLKSGDQDVTKDD 355 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL--- 418 ++ +++V + EP+F GQTK L + + V + +L Sbjct: 356 VLEGLTAVVTVRLAEPQFEGQTKEVLGTPAVTKIVNQVVSRELKTFLASTKAADKAKARL 415 Query: 419 -LEWVIERSEER-LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 +E V+ S+ R + R+++ RK A+ LP KLADC +ELFIVEGDSA G Sbjct: 416 VMEKVVAASKTRLMARQQRDTQRRKNALESSALPAKLADCRSGDVDRSELFIVEGDSALG 475 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 +AK AR+ QA+LP+RGKILNV A + N + ++Q +G + + + RY Sbjct: 476 TAKSARDSGFQALLPVRGKILNVQKASIGDMLKNAECSSIIQVVGAGSGRTFDLDAARYG 535 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVY 590 ++I M DAD DGAHI LL T F++ M L+E ++ PPL RI +G K VY Sbjct: 536 RIIFMADADSDGAHIRCLLATLFFRYMRPLVEAGRVYTAVPPLHRIELSAPKKGQDKYVY 595 Query: 591 AHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649 + + Q+ L + K G + K + R+KGLGEM A QL ET MD RTL R+ ++ Sbjct: 596 TYSDAELQRTLAQLTKKGARWKDPVQRYKGLGEMDADQLAETTMDPRHRTLRRLTVDD-- 653 Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVGT 686 ++ LMG + R +FI + A D + Sbjct: 654 --AEEASAVFELLMGNEVAPRKEFIVQGAYDFDADRIDA 690 >gi|28569047|gb|AAO47227.1|AF205854_1 DNA gyrase subunit B [Streptomyces caeruleus] Length = 677 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 242/679 (35%), Positives = 357/679 (52%), Gaps = 23/679 (3%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ P Q + +YDA +I +L+GL+ VR RPGMYIG T E+ LHHL E++ Sbjct: 5 DTRTATDTPGPQLPGQVGTASYDADAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELV 64 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG A+ I+V++ +G + VVDNGRGIPV HP + +E++LT LHAGGK Sbjct: 65 DNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHP-VEKRPAVEVVLTVLHAGGK 123 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y +SGGLHGVG+SVVNALS L + ++Q + G P +PL ++E Sbjct: 124 FGGGGYTVSGGLHGVGLSVVNALSARLSAEIWTDGHRWTQDYRDGAPTAPLVRREATSR- 182 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD---------KEIAE 253 GT +TF D IF + L + Q A+L+ + + + + Sbjct: 183 TGTSLTFWADGSIFET-TDYSFETLARRFQEMAFLNRGLTLTLTDERASARATAATDEVH 241 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP 313 + + + GG+ ++ + + E A+ W + Sbjct: 242 PDPAAKTVSYRYDGGITDFVAYLNSRKGEPVHPSVVTIAADDTERLLSAEIALQWNGQYT 301 Query: 314 E-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGIL 370 + + SY N I T EGGTHE G R ALT + +YA + ++ ++ +D+ I+ Sbjct: 302 DSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYARDKKLLREKDANLAGEDIREGLTAII 361 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV +REP+F GQTKTKL + + + V+ + + + +NP EA ++ ++ + R+ Sbjct: 362 SVKLREPQFEGQTKTKLGNTEVRTFVQKVVHEHLTDWFDRNPNEAADIVRKAVQAATARV 421 Query: 431 RRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R++ R+ + LPGKL+DC N +E+FIVEGDSAGGSAK RN QA+ Sbjct: 422 AARKARDLTRRKGLLETASLPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAI 481 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A ++I NQ+I L+ A G + LRY KVI+M DADVDG Sbjct: 482 LPIRGKILNVEKARIDRILQNQEIQALISAFGTGMHEDFDIAKLRYHKVILMADADVDGQ 541 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK-SVYAHDEEHKQKILE--EFKK 606 HI +LLLT ++ M LIE+ H++L PPL++I YA+ + + +LE Sbjct: 542 HINTLLLTVLFRFMRPLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERDTLLELGRRDG 601 Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 I RFKGLGEM A +L+ T MD + R L R L+ D + LMG Sbjct: 602 RRVRDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGR----VALDDAAVADDLFSVLMGED 657 Query: 667 ADERFKFIQERASFIDDVG 685 + R FIQ A + + Sbjct: 658 VEARRHFIQRNAKDVRFLD 676 >gi|134096626|ref|YP_001102287.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|291005720|ref|ZP_06563693.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|133909249|emb|CAL99361.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] Length = 630 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 237/639 (37%), Positives = 353/639 (55%), Gaps = 27/639 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T E+ LHHL EV+DN++DE +AGYA +EV+L +G + VVD+GRGIPV+ HP Sbjct: 1 MYIGSTGERGLHHLVQEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHP- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K TLE++LT LHAGGKF +Y +SGGLHGVG+SVVNALS L + ++ Q+ Sbjct: 60 VEKKPTLEVVLTVLHAGGKFGGDSYAVSGGLHGVGVSVVNALSTALEAEIHLHGHVWRQR 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 + P+ L+K + + GT ITF DP IF ++A + + Q A+L+ + Sbjct: 120 YEDSKPVHDLQK-GERTTRTGTTITFWADPTIFETTR-YNAETISRRLQEMAFLNKGLTI 177 Query: 244 CWSCDKEIAEKYGIPEKE---------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 ++ E G + F++PGGL+ +++ + I ++ + Sbjct: 178 VLRDERAAEEHEGGEDASGAAARATERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASG 237 Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353 KG +E A+ W + ++ NTI T EGGTHE G R ALTR + YA+ + + Sbjct: 238 KGH---ELEVAMQWNSGYNQSVYTFANTINTHEGGTHEEGFRSALTRVVNAYAKDKKLLK 294 Query: 354 AI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411 S+ DD+ I+SV + EP+F GQTKTKL + + + V+ + + +N Sbjct: 295 DKDGSLTGDDVREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQTNAFEWLTDWFERN 354 Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 P EA ++ + ++ R+ R+ +E V RK+A+ LPGKL DC N EL+IVE Sbjct: 355 PTEAKTIVNKAVSSAQARVAARRAKELVRRKSAMDIGGLPGKLKDCQSNQPDECELYIVE 414 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSAK+ R QA+LP+RGKI+NV A +K+ N ++ ++ ALG ++ Sbjct: 415 GDSAGGSAKEGRESRFQAILPIRGKIINVEKARIDKVLKNNEVQSIITALGTGIHDEFDL 474 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSV 589 LRY K+++M DADVDG HI +LL+T ++ M LIE H+FL PPL++I + Sbjct: 475 SKLRYHKIVLMADADVDGKHIQTLLMTLLFRFMRPLIEHGHVFLARPPLYKIKWPRSEPE 534 Query: 590 YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 YA+ ++ + +LE GK + I R+KGLGEM A +L ET MD R L++V ++ Sbjct: 535 YAYSDKERDALLEAGASAGKKLPKEDGIQRYKGLGEMNADELWETTMDPATRLLMQVTLD 594 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI A + Sbjct: 595 D----AATADELFSVLMGEDVEARRSFITRNAKDAGLLD 629 >gi|86148731|ref|ZP_01067006.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222] gi|85833480|gb|EAQ51663.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222] Length = 626 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 242/645 (37%), Positives = 357/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I+V Sbjct: 2 TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219 VVNALS + VTV R + G ++ L + GT + F PDPK F Sbjct: 118 VVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDPKYFDSS 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + E ++++ GLK YL ++ Sbjct: 178 -KFSVLRLINNLRAKAVLCPGLEITFVDKVGGEE-------HKWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E + G+ + + SY N + T +GGTH +GLR L Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + LRY K+ I+ DAD DG HIA+LL F + + L+E H+++ PP Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K +LE + K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDN----EATNEMMDMLLGKKRADDRRTWLQTNGDMAE 625 >gi|323966559|gb|EGB61992.1| DNA topoisomerase IV [Escherichia coli M863] gi|327251816|gb|EGE63502.1| DNA topoisomerase IV, B subunit [Escherichia coli STEC_7v] Length = 630 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-EAFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|157148595|ref|YP_001455914.1| DNA topoisomerase IV subunit B [Citrobacter koseri ATCC BAA-895] gi|157085800|gb|ABV15478.1| hypothetical protein CKO_04422 [Citrobacter koseri ATCC BAA-895] Length = 630 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 249/651 (38%), Positives = 364/651 (55%), Gaps = 27/651 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++S F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDAQVYSIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLTHILKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVGT 686 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDMAD-LDA 630 >gi|281180082|dbj|BAI56412.1| DNA topoisomerase IV subunit B [Escherichia coli SE15] Length = 630 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+R+ G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRLDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|218708460|ref|YP_002416081.1| DNA topoisomerase IV subunit B [Vibrio splendidus LGP32] gi|218321479|emb|CAV17431.1| Topoisomerase IV subunit B [Vibrio splendidus LGP32] Length = 626 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 242/645 (37%), Positives = 357/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I+V Sbjct: 2 TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219 VVNALS + VTV R + G ++ L + GT + F PDPK F Sbjct: 118 VVNALSKRVEVTVRRDGQVHEIALEGGHAVTDLTVTGTCGHRNTGTTVHFWPDPKYFDSS 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + E ++++ GLK YL ++ Sbjct: 178 -KFSTLRLINNLRAKAVLCPGLEITFVDKVGGEE-------HKWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E + G+ + + SY N + T +GGTH +GLR L Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + LRY K+ I+ DAD DG HIA+LL F + + L+E H+++ PP Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFHALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K +LE + K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDN----EATNEMMDMLLGKKRADDRRTWLQTNGDMAE 625 >gi|149177758|ref|ZP_01856358.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] gi|148843408|gb|EDL57771.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] Length = 643 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 265/658 (40%), Positives = 375/658 (56%), Gaps = 22/658 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + + Y A I +LEGLE VR RP MYIGG D + LHHL E++DN++DE +A Sbjct: 2 ATAAKTTGAKKYSADDIEVLEGLEAVRRRPSMYIGGVDIRGLHHLLWEIVDNSVDEYLAK 61 Query: 93 YANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 A+ I V+L +G +V DNGRGIPV+ H K KS LE+ILTTLHAGGKF + Y S Sbjct: 62 EADTIIVTLHKDGASCSVKDNGRGIPVDKHSK-TKKSALELILTTLHAGGKFSDKNYARS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG SVVNALS E+ TV R + Q++ +G P +P++K + R GT I FRP Sbjct: 121 GGLHGVGSSVVNALSTEMVATVVRDGHQYVQRYKKGKPTTPVKKVKPFRGH-GTEIYFRP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D IF F+A + + + A++ G +K + + E E P G++ Sbjct: 180 DDDIFRRVH-FNADTIRQHLEDVAFIHGGLKITFRDE-------VKKETHELSHPEGIRG 231 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTH 330 YL+ + + EK+ VE + W + + +I SY N I T GGTH Sbjct: 232 YLEKLTQEQQKKPVHEQLFFAEKED-KNIRVEMVLRWTDATDEQIRSYVNGIRTHAGGTH 290 Query: 331 ESGLRVALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR + + +K Y ++ K + ++I +DD+ + ++SVF +P F GQTK KL + Sbjct: 291 ESGLRSGIAKAVKNYMDVHNIKHKGLAITTDDIREGVLCLISVFHNDPMFQGQTKEKLNN 350 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKL 447 + VE +R + +L QNP A ++ ++ + R+ R ++ R+ ++ RK Sbjct: 351 PEVSGFVEGIVRPLLETWLNQNPSIADAVVGRIVLAARARMASRDAQKEVRRKSVTNRKS 410 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC N +ELF+VEG SAGG+A R+ QAVLPLRGK+LN S KI Sbjct: 411 TLPGKLLDCRSNKPEESELFLVEGLSAGGTAAMGRDSRIQAVLPLRGKVLNTESLAISKI 470 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I DLV+ LG + +LRY ++I++ DAD DG HI++LLLTFF++ M +LI Sbjct: 471 MGNQEIKDLVETLGTGIGPNFEIMNLRYNRIILLMDADSDGYHISTLLLTFFFRHMRELI 530 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 Q LFL PPL+ I G + YA D+ K++I+E + K EI RFKGLGEM AS+ Sbjct: 531 RQGKLFLAQPPLYCIKVGNEKHYAQDDAQKEEIVESLGAN--RKYEIGRFKGLGEMTASE 588 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LKET +D R LL+V+I+ L + + +L G A R+ I + A DD+ Sbjct: 589 LKETTLDPKHRVLLKVDIDSQL----EADATFAQLFGKDASLRYDLIMQEAIEADDID 642 >gi|314982912|gb|EFT27004.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3] gi|315091218|gb|EFT63194.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4] gi|315105172|gb|EFT77148.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2] Length = 685 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 250/662 (37%), Positives = 364/662 (54%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|185179126|ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024055|ref|ZP_02996806.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518297|ref|ZP_03003818.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225550687|ref|ZP_03771636.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551068|ref|ZP_03772014.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184208963|gb|EDU06006.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019091|gb|EDU57131.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998169|gb|EDU67266.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|225378883|gb|EEH01248.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379841|gb|EEH02203.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 642 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD ++I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSAGLHHLVWEIVDNSIDEVMNANAKNINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V+D+GRGIPV+ + + ST+E +LT LHAGGKFD S Y+ +GGLHGVG S Sbjct: 62 LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTILHAGGKFDESAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KF G + K K GT I F PDP IF + Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIHQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINETK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 S I+ K ++ VE A + ++N + S+ N++ T EGG HE+ + ALT Sbjct: 233 KTFSDVIYF----KSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 NVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD +KR LLRV IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPSKRLLLRVNINDIL----QAERQINTLMGNDVSIRRQWIDNNIDFSVIDEL 634 >gi|282853046|ref|ZP_06262383.1| DNA gyrase, B subunit [Propionibacterium acnes J139] gi|282582499|gb|EFB87879.1| DNA gyrase, B subunit [Propionibacterium acnes J139] Length = 690 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 250/662 (37%), Positives = 364/662 (54%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 35 PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 94 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 95 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 153 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 154 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 213 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 214 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 272 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 273 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 331 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ ++S+ + EP+F GQTKTKL + Sbjct: 332 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGN 391 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 392 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 451 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 452 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 511 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 512 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 571 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + HGK + I R+KGLGEM Sbjct: 572 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 631 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 632 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 687 Query: 684 VG 685 + Sbjct: 688 LD 689 >gi|284923056|emb|CBG36149.1| topoisomerase IV subunit B [Escherichia coli 042] Length = 630 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTHPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|110806923|ref|YP_690443.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401] gi|110616471|gb|ABF05138.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401] Length = 630 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 362/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-ERVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|15803577|ref|NP_289610.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 EDL933] gi|12517608|gb|AAG58169.1|AE005533_2 DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str. EDL933] Length = 630 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEXNVRRDGQVYNIAFENGEKVQDLQVVGNCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|148979399|ref|ZP_01815505.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3] gi|145961835|gb|EDK27128.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3] Length = 626 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 244/645 (37%), Positives = 361/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I+V Sbjct: 2 TEQYNAKDLEVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIKVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ S +E+ILT LH+GGKF N+ Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVTDDGRGMPVDIHPE-KGISGVELILTKLHSGGKFSNNNYKFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFGDK 219 VVNALS + VTV R+ + G ++ L ++ GT + F PDPK F Sbjct: 118 VVNALSKRVEVTVRREGQVHEIALEHGKAVTELTVTGTCGHRNSGTSVHFWPDPKYFDSS 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ +S E ++++ GLK YL ++ Sbjct: 178 -KFSTLRLINNLRAKAVLCPGLEITFSDKVNNEE-------HKWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E + G+ + + SY N + T +GGTH +GLR L Sbjct: 230 YTLLPEEPYVGEFVAETEM-ANWAIIWQPEGGDMITESYVNLVPTKQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEACIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTRHFSALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KSKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDN----EATLEMMDMLLGKKRADDRRTWLQTNGDMAE 625 >gi|153835670|ref|ZP_01988337.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01] gi|148867704|gb|EDL66971.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01] Length = 626 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 250/645 (38%), Positives = 358/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + ++++ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWHYEDGLKDYLSEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YPVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625 >gi|295394759|ref|ZP_06804974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] gi|294972355|gb|EFG48215.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] Length = 700 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 243/698 (34%), Positives = 344/698 (49%), Gaps = 60/698 (8%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ +Y A +++LEGLE VR RPGMYIG TD + L H E+IDNA+DE + GY I V Sbjct: 2 ATSDYGARQLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALGGYGENITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G +TV DNGRGIPV+ P+ + +E+++T LHAGGKF +Y GGLHGVG Sbjct: 62 TLHEDGSVTVEDNGRGIPVDIEPR-TGLTGVELVMTKLHAGGKFGGGSYSAVGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202 SVVNALS L + V R + ++ F RG P ++ E + Sbjct: 121 SVVNALSSRLDIEVTRSSKVYRMSFKRGAPGMFTDRNEPHPDNDFTPFKKESKLEVVGKA 180 Query: 203 ----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY--- 255 GT+I + DP+IF A F+ L+ + A+L +K ++ +A Sbjct: 181 KRGVTGTKIRYWADPQIFIRDAKFNYDHLVDRARQTAFLVPGLKITLVDNRGVAVDETGA 240 Query: 256 -GIPEKEEFYFPGGLKTYLQTKLEN---------------RSLISSEIFTGKTE-KKGTH 298 EEF F GG+ ++ + + + +G E ++ Sbjct: 241 PIPHRVEEFQFDGGISAFVDHLAHDAALTDTWRFTTQSSFKETVPVLNSSGHMESQEVER 300 Query: 299 RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELT---QNKRA 354 TV+ A+ W + S+ N I T +GGTH SG + + I+K E Sbjct: 301 DITVDVALRWGNGYDTMLKSFVNIIATPKGGTHVSGFEQGIVKTIRKAVESNARRLKVGK 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 + DD++ +++V + EP+F GQTK L + + R VE L + Sbjct: 361 DKLEKDDILAGLTAVVTVALAEPQFEGQTKEVLGTPPVRGIVSRAVEKELTSILESSHRA 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + LLE V+ + R+ R R RKTA+ LP KL DC ++ TELFIV Sbjct: 421 TKSQVNTLLEKVVAEMKSRISARTHRENQRRKTALESSSLPAKLYDCRKSDVDETELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK ARN QA+ P+RGKILNV A + N + L Q +G + + Sbjct: 481 EGDSAMGTAKAARNSEMQALFPIRGKILNVQKASVADMLANAECAALTQVIGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----Q 584 E RY KVIIMTDADVDGAHI +LLLT F++ M L+E +F PPL RI + Sbjct: 541 LEQARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHRIEVVNRGK 600 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 +Y + E K + + K R+KGLGEM A QL ET MD R L RV Sbjct: 601 ANDVIYTYSEAELHKTIARLDRQKKSYKTPQRYKGLGEMDADQLAETTMDPEHRMLRRVT 660 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ++ + + N LMG++ R +FI A+ +D Sbjct: 661 MDD----VAKADTTFNLLMGSEVAPRKQFIVSGAASLD 694 >gi|229524416|ref|ZP_04413821.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426] gi|229337997|gb|EEO03014.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426] Length = 626 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 253/647 (39%), Positives = 366/647 (56%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 +L+ E FTG+ V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 YTLLPEEPFTGEF---TAQTEAVTWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC Sbjct: 347 SGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 405 TVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S E LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 583 TRRLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625 >gi|160878454|ref|YP_001557422.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans ISDg] gi|160427120|gb|ABX40683.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans ISDg] Length = 642 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 234/662 (35%), Positives = 347/662 (52%), Gaps = 40/662 (6%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+ S I +LEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ N +E++L Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +++ D+GRG+PV+ HP T ++ T LHAGGKF S Y++SGGLHGVG SV Sbjct: 62 LKDGGISIADHGRGVPVDIHP-TKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-------KVRNKRGTRITFRPDPK 214 VNALS + V + R I+ ++ G + ++ GT++TF PDP Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A + K + A+L+ + + +K + G+K+++ Sbjct: 181 IFET-VEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKT-------YCEEFGIKSFVS 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 S+I E + + VE A+ + +I +YCN I +GGT +G Sbjct: 233 YINREASVIHEEPIYIEGKSGDI---EVEVALQYTNSFSEQINAYCNRINVVDGGTLVTG 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + +YA ++ + D+ V I+S+ +P+F GQTKTKL + D Sbjct: 290 FKTALTRVMNQYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTD 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A+ VE+ + +N +LE + R K R + + Sbjct: 350 AKSAVEDVFSGEVTRFFDKNVEILKAILENSMRSYTARKASDKARS-AVLKQLNDIDTKS 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA CS E++IVEGDSAGG+ K ARNR QAVLPLRGKI+NV A EKI N Sbjct: 409 KLASCSSKKPEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNN 468 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I ++ + GC + LRY+K+II+TDADVDGAHI++LLLTFFY+ M +LI + Sbjct: 469 EIKSMIASFGCGIGEDFDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGK 528 Query: 572 LFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEM 623 ++ PPL+R+ + K Y +++ L++F+K+ K K I I R+KGLGEM Sbjct: 529 IYRGLPPLYRVEYETSEGKKKKKFEYIYNDFE----LDKFRKNTKHKIIHIQRYKGLGEM 584 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A QL ET ++ R L +V I + D ++ LM R FI + A + Sbjct: 585 DAEQLWETTLNPETRVLAQVSITDTV----DADETTTLLMSNNVPPRRAFIMDEAKYAK- 639 Query: 684 VG 685 + Sbjct: 640 LD 641 >gi|294790228|ref|ZP_06755386.1| DNA gyrase, B subunit [Scardovia inopinata F0304] gi|294458125|gb|EFG26478.1| DNA gyrase, B subunit [Scardovia inopinata F0304] Length = 703 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 247/711 (34%), Positives = 380/711 (53%), Gaps = 33/711 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA--NQSASDNYDASSIRILEGLEPV 58 M D+ D+ + PQ + ++ +K +S ++ ++YDAS +R+LEGLE V Sbjct: 1 MADE--DMTNPTDPQEEQTAVTEQKEDAPLNSNGEQLDDEMKPEHYDASDLRVLEGLEAV 58 Query: 59 RMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV 118 R+RPGMYIG T + LHHL E++DN++DE +AGYA+ IEV++ + VVD+GRGIPV Sbjct: 59 RIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYASHIEVTILSGNGIQVVDDGRGIPV 118 Query: 119 ENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNT 178 + P KS +E ++T LHAGGKF Y +SGGLHGVGISVVNALS + V V RQ Sbjct: 119 DEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISVVNALSTRVDVEVRRQGY 177 Query: 179 IFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAY 236 ++Q + PL+PL++ + + GT +TF DP IF +D L Q A+ Sbjct: 178 HWTQTYVNQKPLAPLKQGKPMNEGETTGTSVTFWADPAIFDT-TDYDFETLRSRFQQMAF 236 Query: 237 LSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPGGLKTYLQTKLENRSLIS 284 L+ +K + + I E + + G+K Y+ ++ ++ Sbjct: 237 LNKGLKISLTDLRSIDEAGDEVASDGDNVVEELHRTVTYQYVNGIKDYVNYLVKAKNANP 296 Query: 285 SEIFTGKTEKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGI 342 E + + TH+G + E A+ W + ++ NTI T EGGTHE G R ALT + Sbjct: 297 IENDIIDIDAEDTHQGISAEIAMQWTSAYSESVHTFANTISTTEGGTHEEGFRAALTGLV 356 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 +YA ++ ++ DD+ V ++SV + P+F GQTKTKL + A+ V+ + Sbjct: 357 NRYARDKGILKEKDDNLSGDDVREGLVAVVSVKLTVPQFEGQTKTKLGNAIAKTFVQRVM 416 Query: 401 RDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +P EA +++ +E ++ + RK+ +P KL DC + Sbjct: 417 TERMTDWFDAHPSEAKSIIQKGMEAARARLAAKKARESTRRKSIFESAGMPDKLKDCQSS 476 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A +++ + I L+ A Sbjct: 477 DPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILNTERASLDRMMKSDTIESLITA 536 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G ++ +RY K+IIM DADVDGAHIA+L LT F++ M +I + ++++ PPL Sbjct: 537 IGGGYGEEFDISKVRYHKIIIMADADVDGAHIATLNLTLFFRYMRPMITEGYVYVAMPPL 596 Query: 580 FRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFKGLGEMLASQLKETAMDA 635 +R+ + + + + ++LEE + G+ I R+KGLGEM +L ET MD Sbjct: 597 YRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYKGLGEMTYQELWETTMDP 656 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + R L ++ I+ ++ + LMG + + R FIQ A + Sbjct: 657 DHRILKQIHIDD----AAQADETFSMLMGEEVEPRRLFIQRNAHDARFIDA 703 >gi|153831107|ref|ZP_01983774.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39] gi|148873413|gb|EDL71548.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39] Length = 626 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKLADC+ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLADCTV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + E LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 467 ALGIDPDNDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRTWLQRNGDMAE 625 >gi|314922686|gb|EFS86517.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1] Length = 685 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 250/662 (37%), Positives = 365/662 (55%), Gaps = 19/662 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + +YDA I +LEGLE VR RPGMYIG T E+ LHH E++DN++DE +AGY + Sbjct: 30 PPTTVDGSYDAGQITVLEGLEAVRKRPGMYIGSTGERGLHHCVYEIVDNSVDEAMAGYCD 89 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V L + + V DNGRGIPV+ HP + T+ ++LT LHAGGKF N Y++SGGLH Sbjct: 90 TIQVELLDDNWCQVTDNGRGIPVKEHP-VEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLH 148 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG SVVNAL+ V V R + Q FS G P PLE+ E + GT + F+P Sbjct: 149 GVGSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSD 208 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTY 272 +IF FD L + A+L+ ++ + + + A++ G P E+F + GLK Y Sbjct: 209 EIFDAIV-FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDY 267 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 ++ R +I+ I + ++ + G +E A+ W + ++ N I T EGG HE Sbjct: 268 VRFLTGTRDVINPTIISLESHRPEEGMG-LEIAMQWNTSYATSVHTFANAINTIEGGAHE 326 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R ALT + ++ E KR + DD+ + ++S+ + EP+F GQTKTKL + Sbjct: 327 EGFRAALTNTVNRWGETWGLIKKREDRVSGDDIREGLIAVVSIKLTEPQFEGQTKTKLGN 386 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA--IRKL 447 +A+ V+ AL + + +NP E ++ ++ R+ RK R++ R + Sbjct: 387 AEAKSFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGST 446 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DCS E+FIVEGDSAGGSA Q R+ QA+LPLRGKILNV A ++ Sbjct: 447 SLPGKLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRA 506 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++ I ++ ALG + + LRY K+I+M DADVDGAHI +LLLT ++ M +I Sbjct: 507 LGSETIESIINALGTGVHEDFDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVI 566 Query: 568 EQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEM 623 + H++L PPLFR+ A+ +E + + + HGK + I R+KGLGEM Sbjct: 567 DAGHVYLAQPPLFRLRWTNSPHELAYSDEERDLLRGDGLTHGKKLPQVNPIQRYKGLGEM 626 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 A L +T MD +KR LL+V + + LMG ++R FIQ A + Sbjct: 627 DAEDLWDTTMDPDKRLLLQVTLED----AALADQMFSILMGEDVEQRRSFIQRNAKDVRF 682 Query: 684 VG 685 + Sbjct: 683 LD 684 >gi|91228380|ref|ZP_01262307.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01] gi|91188079|gb|EAS74384.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01] Length = 626 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + + ++Y+ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNDKDYKWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +I E FTG+ SY N I T +GGTH +GLR L Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625 >gi|13358029|ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761866|ref|YP_001752551.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11270883|pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma urealyticum gi|6899460|gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827443|gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 642 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD ++I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V+D+GRGIPV+ + + ST+E +LT LHAGGKFD S Y+ +GGLHGVG S Sbjct: 62 LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KF G ++ K K GT I F PDP IF + Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHINQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339 S I+ + ++ VE A + ++ N + S+ N++ T EGG HE+ + ALT Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD N R LL++ IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634 >gi|269967413|ref|ZP_06181473.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B] gi|269828001|gb|EEZ82275.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B] Length = 626 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + + ++Y+ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNGKDYKWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +I E FTG+ SY N I T +GGTH +GLR L Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625 >gi|258620848|ref|ZP_05715882.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573] gi|258626885|ref|ZP_05721689.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603] gi|258580808|gb|EEW05753.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603] gi|258586236|gb|EEW10951.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573] Length = 626 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 249/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELAVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV +++P+FAGQTK +L S + V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC+ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCTV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 467 ALGIDPDSDNL-ESLRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRTWLQRNGDMAE 625 >gi|308050989|ref|YP_003914555.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799] gi|307633179|gb|ADN77481.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799] Length = 630 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 254/650 (39%), Positives = 367/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y + +I +L GLEPV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 SNQYTSDAIEVLSGLEPVQKRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASEIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHPDHSLEVIDDGRGMPVDIHPE-EGVPGVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L R GTR+ F PDPK F + Sbjct: 118 VVNALSRRVEVTVRRDAQVYEIAFEHGAKVQDLTVTGTCGRRNTGTRVHFWPDPKYFDSE 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++RL+ + ++KA L +K + + E+ E+YF GL+ YL ++ Sbjct: 178 -KFSSSRLIHLLRAKAVLCPGLKIRFDDKIK-------GERHEWYFEDGLRDYLVDAVKE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + E F G V+WA+ W E + SY N I T +GGTH +G R Sbjct: 230 WPKLPEEPFVGSFSANNE---AVDWAVLWLPEGGDSVSESYVNLIPTAQGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ A ILS +++P+FAGQTK +L S + V Sbjct: 287 LLEAMREFCEFRNLLPRGIKLGPEDIWDKASYILSTKMQDPQFAGQTKERLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L ++ +A L E I ++ RLR+ K +V RK LPGKL DC Sbjct: 347 SGVVRDAFSLWLNEHTDQAELLAELCINNAQSRLRKAK--KVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDASRGELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDAAQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S LRY K+ I+ DAD DG HIA+LL F Q L+E+ H+++ Sbjct: 465 SVAIGCDPDSDDI-SGLRYGKICILADADSDGLHIATLLCALFMQHFRTLVERGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPLFR+ G + YA DE KQ IL+ K K GK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRVDVGKEVFYALDEGEKQGILDRIKAENKRGKVQVTRFKGLGEMNPVQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 N R L+++ ++ ++ L ++ +R ++++ D + Sbjct: 584 NTRRLVQLTVDDAEATMALMDML---LAKKRSGDRKEWLERNGDLAD-LD 629 >gi|156973195|ref|YP_001444102.1| DNA topoisomerase IV subunit B [Vibrio harveyi ATCC BAA-1116] gi|156524789|gb|ABU69875.1| hypothetical protein VIBHAR_00875 [Vibrio harveyi ATCC BAA-1116] Length = 626 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 250/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + ++++ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWHYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YPVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDSV----ATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625 >gi|324114937|gb|EGC08902.1| DNA topoisomerase IV [Escherichia fergusonii B253] Length = 630 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 583 TRRLVQLFIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 >gi|183508547|ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675987|gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 642 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 351/655 (53%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD ++I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V+D+GRGIPV+ + + ST+E +LT LHAGGKFD Y+ +GGLHGVG S Sbjct: 62 LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDEGAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KF G + K K GT I F PDP IF + Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339 S I+ + ++ VE A + ++ N + S+ N++ T EGG HE+ + ALT Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD N R LL++ IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634 >gi|312914206|dbj|BAJ38180.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 630 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFFVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629 >gi|186701799|ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701080|gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 642 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 352/655 (53%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD ++I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V+D+GRGIPV+ + + ST+E +LT LHAGGKFD S Y+ +GGLHGVG S Sbjct: 62 LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KF G + K K GT I F PDP IF + Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339 S I+ + ++ VE A + ++ N + S+ N++ T EGG HE+ + ALT Sbjct: 233 KTFSDVIYF----RSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD N R LL++ IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634 >gi|254230596|ref|ZP_04923958.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25] gi|151936883|gb|EDN55779.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25] Length = 626 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 254/645 (39%), Positives = 355/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + + ++Y+ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITLTDK-------VNGKDYKWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +I E FTG+ SY N I T +GGTH +GLR L Sbjct: 230 YPVIPEEPFTGEFLADTEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 EAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSA 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-EGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDDST----ATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625 >gi|297581055|ref|ZP_06942980.1| topoisomerase IV [Vibrio cholerae RC385] gi|297534881|gb|EFH73717.1| topoisomerase IV [Vibrio cholerae RC385] Length = 626 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 247/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC+ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + E LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 467 ALGIDPDNDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625 >gi|161506253|ref|YP_001573365.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867600|gb|ABX24223.1| hypothetical protein SARI_04448 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 630 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 367/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R I++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQIYNIAFENGEKVQDLQVTGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RLL + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLLHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629 >gi|16761956|ref|NP_457573.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766481|ref|NP_462096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143443|ref|NP_806785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415122|ref|YP_152197.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181695|ref|YP_218112.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616170|ref|YP_001590135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551906|ref|ZP_02345659.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990269|ref|ZP_02571369.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231780|ref|ZP_02656838.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243007|ref|ZP_02667939.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262861|ref|ZP_02684834.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463611|ref|ZP_02697528.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819756|ref|ZP_02831756.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443762|ref|YP_002042448.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450180|ref|YP_002047178.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468478|ref|ZP_03074462.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250406|ref|YP_002148108.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262850|ref|ZP_03162924.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364051|ref|YP_002143688.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243780|ref|YP_002217161.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388424|ref|ZP_03215036.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928305|ref|ZP_03219505.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354097|ref|YP_002227898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858440|ref|YP_002245091.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424345|ref|ZP_03357169.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579856|ref|ZP_03361682.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213645890|ref|ZP_03375943.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224584982|ref|YP_002638781.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909982|ref|ZP_04653819.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|61229760|sp|P0A2I5|PARE_SALTY RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|61229761|sp|P0A2I6|PARE_SALTI RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|25292821|pir||AE0889 topoisomerase IV chain B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421737|gb|AAL22055.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504258|emb|CAD03013.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi] gi|29139077|gb|AAO70645.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129379|gb|AAV78885.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129328|gb|AAX67031.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|149693021|emb|CAK55545.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693023|emb|CAK55546.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|161365534|gb|ABX69302.1| hypothetical protein SPAB_03972 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402425|gb|ACF62647.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408484|gb|ACF68703.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194454842|gb|EDX43681.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633404|gb|EDX51818.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095528|emb|CAR61093.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214109|gb|ACH51506.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241105|gb|EDY23725.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938296|gb|ACH75629.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605522|gb|EDZ04067.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322627|gb|EDZ07824.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273878|emb|CAR38879.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323370|gb|EDZ11209.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331076|gb|EDZ17840.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333857|gb|EDZ20621.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337845|gb|EDZ24609.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343316|gb|EDZ30080.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348386|gb|EDZ35017.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710243|emb|CAR34600.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469510|gb|ACN47340.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248311|emb|CBG26148.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995372|gb|ACY90257.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159735|emb|CBW19254.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320087633|emb|CBY97397.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225861|gb|EFX50915.1| Topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613584|gb|EFY10525.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621176|gb|EFY18034.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624239|gb|EFY21073.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628023|gb|EFY24812.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633140|gb|EFY29882.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636282|gb|EFY32990.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643535|gb|EFY40096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647448|gb|EFY43937.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648633|gb|EFY45080.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653685|gb|EFY50011.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657793|gb|EFY54061.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663894|gb|EFY60093.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669093|gb|EFY65244.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672912|gb|EFY69019.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678097|gb|EFY74160.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681273|gb|EFY77306.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687796|gb|EFY83763.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716181|gb|EFZ07752.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131542|gb|ADX18972.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195608|gb|EFZ80785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199710|gb|EFZ84800.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202541|gb|EFZ87581.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207970|gb|EFZ92916.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212478|gb|EFZ97295.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215040|gb|EFZ99788.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222770|gb|EGA07135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224148|gb|EGA08441.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230472|gb|EGA14590.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235176|gb|EGA19262.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239216|gb|EGA23266.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244426|gb|EGA28432.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247042|gb|EGA31008.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253476|gb|EGA37305.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256218|gb|EGA39954.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267298|gb|EGA50782.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269299|gb|EGA52754.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624937|gb|EGE31282.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629215|gb|EGE35558.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 630 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 367/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629 >gi|1405461|emb|CAA97606.1| GrlB [Bacillus subtilis subsp. subtilis str. 168] Length = 627 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 237/630 (37%), Positives = 354/630 (56%), Gaps = 36/630 (5%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD + LHHL E++DN++DEV+AG+ + I V + + ++V D GRG+P H Sbjct: 1 MYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMHK- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T E+ILT LHAGGKF Y+ SGGLHGVG SVVNALS+ L VT+ R ++ Q+ Sbjct: 60 -LGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQR 118 Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G P++ LEK K + GT F+PDP +F ++ L + + A+L +K Sbjct: 119 FENGGKPVTSLEKIGKTKK-TGTLTHFKPDPTMFSTTT-YNFETLSERLRESAFLLKGLK 176 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 ++ ++E FY+ G++ ++ E + ++ SE+ + + E H V Sbjct: 177 IELIDER-------NDQREVFYYENGIEAFVAYLNEEKDVL-SEVVSFEGE---HHSIEV 225 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISIIS 359 ++A + + I S+ N + T +GGTHESG + A+TR +YA ++ ++ Sbjct: 226 DFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEG 285 Query: 360 DDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 D+ I+SV I E +F GQTK KL + +A+ V+ + + ++L +N AT Sbjct: 286 TDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATL 345 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSA 474 L++ I+ S+ R RK RE R RK L GKL EL++VEGDSA Sbjct: 346 LVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSA 405 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQ R+R QAVLPLRGK++N A I N++I ++ A+G + + +D+ Sbjct: 406 GGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDIN 465 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG--TKSV--Y 590 Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE +F+ PPL+++++G K + Y Sbjct: 466 YDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEY 525 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A +E +L++ K I R+KGLGEM A QL ET M+ RTL+RV+I+ Sbjct: 526 AWSDEEMGDVLKKVGK----GYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDD--- 578 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680 + + LMG K + R K+I++ +F Sbjct: 579 -AARVERRVTTLMGDKVEPRRKWIEKNVAF 607 >gi|171920400|ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902839|gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 642 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 353/655 (53%), Gaps = 33/655 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YD ++I+ILEGLE VR RPGMYIG T LHHL E++DN++DEV+ A I V Sbjct: 2 ANKYDGNAIKILEGLEAVRKRPGMYIGSTSSTGLHHLIWEIVDNSIDEVMNANAKNINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + ++V+D+GRGIPV+ + + ST+E +LT LHAGGKFD S Y+ +GGLHGVG S Sbjct: 62 LHEDNSISVLDDGRGIPVDINSQ-TKISTVETVLTVLHAGGKFDESAYKTAGGLHGVGSS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L V R I+ KF G + K K GT I F PDP IF + Sbjct: 121 VVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTKKTGTLIHFLPDPLIFKNLV 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ + + +L +K + E +K EF GL +++ E + Sbjct: 181 -FNPNIIKERLHESTFLIKDLKIIF-------EDKINKKKYEFINNQGLIDFIKFINEAK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALT 339 S I+ + ++ VE A + ++ N + S+ N++ T+EGG HE+ + ALT Sbjct: 233 KTFSDVIYF----RSNINKIEVEIAFQYSDQNNEIMVSFANSVKTNEGGVHENAFKNALT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + YA ++ ++ DD+ ++S+ I E + GQTK KL + +A Sbjct: 289 SVVNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKL 453 V+ + D F +L +N +A L+ I + +L ++ RE +K K + GKL Sbjct: 349 VKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ELF+VEGDSAGGSAK RN+ QA+LPLRGK+LNV A + N++I Sbjct: 409 TPAQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LG +++ + L+Y K+IIMTDAD DG+HI LLLT FY+ M LIE +++ Sbjct: 469 ASIFTCLGTGIGAEFDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIY 528 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + PPL+++T K YA D+ ++ +E K EI R+KGLGEM A QL ET Sbjct: 529 IALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKN-----YEIQRYKGLGEMNADQLFET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDV 684 MD N R LL++ IN L + IN LMG R ++I F ID++ Sbjct: 584 TMDPNNRLLLKININDIL----QAERQINTLMGNDVSIRKQWIDNNIDFSVIDEL 634 >gi|15642428|ref|NP_232061.1| DNA topoisomerase IV subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591635|ref|ZP_01678879.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80] gi|147674220|ref|YP_001217932.1| DNA topoisomerase IV subunit B [Vibrio cholerae O395] gi|153214083|ref|ZP_01949217.1| topoisomerase IV, subunit B [Vibrio cholerae 1587] gi|153820156|ref|ZP_01972823.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457] gi|153827239|ref|ZP_01979906.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2] gi|227082552|ref|YP_002811103.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2] gi|229507509|ref|ZP_04397014.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286] gi|229512295|ref|ZP_04401774.1| topoisomerase IV subunit B [Vibrio cholerae B33] gi|229514057|ref|ZP_04403519.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21] gi|229519432|ref|ZP_04408875.1| topoisomerase IV subunit B [Vibrio cholerae RC9] gi|229521258|ref|ZP_04410678.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80] gi|229527037|ref|ZP_04416432.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)] gi|229607015|ref|YP_002877663.1| DNA topoisomerase IV subunit B [Vibrio cholerae MJ-1236] gi|254849555|ref|ZP_05238905.1| topoisomerase IV [Vibrio cholerae MO10] gi|298500211|ref|ZP_07010016.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757] gi|9657006|gb|AAF95574.1| topoisomerase IV, subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546506|gb|EAX56719.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80] gi|124115509|gb|EAY34329.1| topoisomerase IV, subunit B [Vibrio cholerae 1587] gi|126509296|gb|EAZ71890.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457] gi|146316103|gb|ABQ20642.1| topoisomerase IV, subunit B [Vibrio cholerae O395] gi|149738853|gb|EDM53189.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2] gi|227010440|gb|ACP06652.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2] gi|227014323|gb|ACP10533.1| topoisomerase IV, subunit B [Vibrio cholerae O395] gi|229335434|gb|EEO00916.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)] gi|229341790|gb|EEO06792.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80] gi|229344121|gb|EEO09096.1| topoisomerase IV subunit B [Vibrio cholerae RC9] gi|229349238|gb|EEO14195.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21] gi|229352260|gb|EEO17201.1| topoisomerase IV subunit B [Vibrio cholerae B33] gi|229355014|gb|EEO19935.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286] gi|229369670|gb|ACQ60093.1| topoisomerase IV subunit B [Vibrio cholerae MJ-1236] gi|254845260|gb|EET23674.1| topoisomerase IV [Vibrio cholerae MO10] gi|297540904|gb|EFH76958.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757] Length = 626 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 361/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC+ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 467 ALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625 >gi|110004707|emb|CAK99042.1| dna topoisomerase iv subunit b protein [Spiroplasma citri] Length = 645 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 250/655 (38%), Positives = 351/655 (53%), Gaps = 30/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + YD SSI+ILEGL+ VR RPGMYIG TD + LHHL E+IDN++DE +AGY Sbjct: 1 MSIEDKTLKYDESSIQILEGLDAVRKRPGMYIGSTDVRGLHHLVWEIIDNSIDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N I++ + N + V DNGRG+P H KST E+I + LHAGGKF Y+ +GGL Sbjct: 61 NEIDIIIYKNNAIMVADNGRGVPTGVH--SSGKSTPEVIFSVLHAGGKFGGDGYKTAGGL 118 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG SVVNALS VT+ R + ++S KF+ G + K K GT +TF PD K Sbjct: 119 HGVGSSVVNALSATFDVTIYRDHKVWSIKFANGGQVKEPLTKIGTTTKTGTTVTFLPDHK 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F + + + + A+L+ VK + + +K + F GL+ ++ Sbjct: 179 IFKV-IDFSFSTISERIRESAFLNSGVKLTLTDQR-------TDKKVSYLFNNGLEEFIT 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 E++ I+ I EK+ ++++ E N + S+ N + T EGG+H G Sbjct: 231 YMNEDKKSITPIIMLKGVEKQIEVEIALQYST---EFNENLLSFANNVKTSEGGSHVVGF 287 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSL 390 R LT+ I YA ++ ++ S D I+SV I E ++ GQTK KL + Sbjct: 288 RTGLTKVINDYARKEGLLKEKDKNLDSVDTREGLTTIVSVKIPENLIQYEGQTKGKLGTY 347 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL- 449 +A+ VE + F +L +N A ++E + R RK RE R + R Sbjct: 348 EARVAVETIVSKQFGFWLTENKTNAYTIIEKALLARNVREEARKAREAARNSKKRGNSDR 407 Query: 450 --PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 GKL E+F+VEGDSAGGSAK R+R QA+LPLRGK++N A + + Sbjct: 408 LLTGKLTPAQNRNKFNNEIFLVEGDSAGGSAKLGRDRRFQAILPLRGKVINAEKAKLQDL 467 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NN++I ++ A+G + + D Y KVIIMTDAD DGAHI +LLLTFFY+ M LI Sbjct: 468 MNNEEINVMINAIGAGVGNGFDINDANYGKVIIMTDADTDGAHIQTLLLTFFYRYMRPLI 527 Query: 568 EQKHLFLISPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 E ++L PPLF+I T+ YA DE + L +F GK E+ R+KGLGEM A Sbjct: 528 ENHRVYLALPPLFKITSTKNKHIEYAWDETELKNKLSQFH----GKFELQRYKGLGEMNA 583 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL ET M+ R L+ V I+ + + I LMG A +R +I E F Sbjct: 584 EQLWETTMNPQTRQLILVTIDDAVM----AERRIVTLMGDDAKKRKYWIDENVKF 634 >gi|269137554|ref|YP_003294254.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202] gi|238551759|gb|ACR44351.1| topoisomerase IV [Edwardsiella tarda] gi|267983214|gb|ACY83043.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202] gi|304557627|gb|ADM40291.1| Topoisomerase IV subunit B [Edwardsiella tarda FL6-60] Length = 631 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 254/649 (39%), Positives = 362/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDNGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V+V R I+ F G + L V R GT + F PD + F Sbjct: 120 VNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFDSAR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 180 -FSVSRLTHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPEQPFTGTFASDTE---AVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQSAELLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I ++ T ++ L+ K A++R ++QE + + + Sbjct: 585 RRLVQLTIED--EDMERTVAVMDMLLAKKRAEDRRNWLQENGNLAE-LD 630 >gi|312885199|ref|ZP_07744878.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC BAA-2122] gi|309367139|gb|EFP94712.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC BAA-2122] Length = 626 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 244/644 (37%), Positives = 354/644 (54%), Gaps = 24/644 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y+A + +LEGL+PVR RPGMY T+ + +HL EVIDN++DE +AG+A I V L Sbjct: 3 EQYNAKDLSVLEGLDPVRHRPGMY---TETERPNHLAQEVIDNSVDEALAGHAKKIRVIL 59 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L VVD+GRG+PV+ HP+ S +E+I+T LHAGGKF N Y+ SGGLHGVGISV Sbjct: 60 HEDQSLEVVDDGRGMPVDIHPE-KGISGVELIMTKLHAGGKFSNDNYKFSGGLHGVGISV 118 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + F G ++ L GT + F PD K F Sbjct: 119 VNALSRRVEVTVKRDGQVHEIAFEGGDAVTELSVTGTCGMRNTGTSVHFWPDAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + RL+ ++KA L ++ +S E ++++ GLK YL ++ Sbjct: 178 KFSSLRLVNNLRAKAVLCPGLEIIFSDKVNNEE-------HKWFYEDGLKDYLAEGVKGY 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ + G + T SY N + T +GGTH +GLR L Sbjct: 231 EVLPDLPYIGSFSAESEM-ATWAVIWQPEGGEMITESYVNLVPTKQGGTHVNGLRQGLLD 289 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 290 AMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGV 349 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 350 VKDAFSLWLNETPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSVQ 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ A Sbjct: 408 DLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PPL Sbjct: 468 LGIDPDNDDL-SGLRYGKICILADADSDGLHIATLLCALFTKHFRALVEAGHIYVAMPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +RI G + YA D++ K+ +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 527 YRIDCGKEVFYALDDDEKEGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 586 LVQLTIDD----RESTIEMMDMLLGKKRADDRRSWLQANGDMAE 625 >gi|154238|gb|AAA27182.1| topoisomerase IV subunit E [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 630 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + ++D+ +LSV +++P+FAGQ K +L S V Sbjct: 287 LLDAMREFCEYRNILPRGQKLSAEDIWDRCAYVLSVKMQDPQFAGQPKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAR--KKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629 >gi|237807171|ref|YP_002891611.1| DNA topoisomerase IV subunit B [Tolumonas auensis DSM 9187] gi|237499432|gb|ACQ92025.1| DNA topoisomerase IV, B subunit [Tolumonas auensis DSM 9187] Length = 630 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 247/648 (38%), Positives = 366/648 (56%), Gaps = 27/648 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TQAYTAESIEVLNGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+I+ LHAGGKF NS Y+ SGGLHGVGIS Sbjct: 59 LHDDQSLEVTDDGRGMPVDIHPE-EGVPAVELIMCKLHAGGKFSNSNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F +G ++ L + GTR+ F PD K F Sbjct: 118 VVNALSRRVEVTVRRDGNVYEMAFEQGDKVADLTITGTCGKRNTGTRVKFWPDAKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F A+RL+ + ++KA L + + E + ++ + GL+ YL L++ Sbjct: 178 -KFSASRLVHILKAKAVLCPGLTIHF-------EDRVNQQVYDWCYQDGLRDYLLDNLKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + FTG+ + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 VIRLPEQPFTGQFSADNS---AVDWALCWLPEGGELISESYVNLIPTVQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + DD+ ILS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPDDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L N A +L E I ++ RLR + V RK + LPGKL DC Sbjct: 347 SGIVKDAFSLWLNSNIELAEQLAELCINSAQRRLR--AAKTVVRKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + ELF+VEGDSAGGSAKQAR R QA++PLRGKILN + ++ +Q++ + Sbjct: 405 NCSDPMQGELFLVEGDSAGGSAKQAREREFQAIMPLRGKILNTWEVDASEVLASQEVHHI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SIAVGMDPDSDDL-SGLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEKGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE+ K+ +L+ K K +++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDLGKEVYYALDEDEKEGVLQRLKAEKKRGTPQVTRFKGLGEMNPKQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ ++ + ++T ++ L+ K + +R ++++ + + D Sbjct: 584 NTRRLVQLTLDDE---TEETMQLMDMLLAKKRSGDRREWLESKGNLAD 628 >gi|220935291|ref|YP_002514190.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7] gi|219996601|gb|ACL73203.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7] Length = 640 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 372/648 (57%), Gaps = 28/648 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +++Y+A+ I +L GL+PVR RPGMY TD +HL EVIDN++DE IAG+A I+V Sbjct: 12 TNSYNAADIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHAKKIDVV 68 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L+V D+GRG+PV+ HPK + +E+IL+TLHAGGKF Y+ SGGLHGVG+S Sbjct: 69 LHKDNSLSVADDGRGMPVDMHPK-EKRPGVEVILSTLHAGGKFSGKNYQFSGGLHGVGVS 127 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V + R ++ F+ G + LE +V R GT + F PDPK F Sbjct: 128 VVNALSRHLEVWIKRDGREYNMAFADGHKKTDLEVVGEVGRRNTGTTLRFWPDPKYFDSP 187 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL + ++KA L + + + E+ ++ + GL+ YL ++ Sbjct: 188 -KFSVPRLKHILRAKAVLCPGLAVSFYDE-------VTGERVDWCYQAGLRDYLVEAVDG 239 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + E F G +WA+ W E E SY N I T +GGTH +GLR Sbjct: 240 FERVPEEPFMGSI---AGQTEAADWAVVWLPEGGEAVAESYVNLIPTAQGGTHVNGLRTG 296 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LT ++++ E R + + +D+ ILS +++P+FAGQTK +L S +A V Sbjct: 297 LTDAVREFCEFRNLLPRGVKLTPEDVWDRVAYILSFKMQDPQFAGQTKERLSSREAAPFV 356 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+P ++ E I ++ R R ++V RK + LPGKLADC Sbjct: 357 SGVVKDAFSLWLNQHPAAGERIAELAINSAQRRAR--AGKKVVRKKLTQGPTLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q+I D+ Sbjct: 415 ASQDLARTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNAWEVEADQVLGSQEIHDI 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + +DLRY K+ I+ DAD DGAHIA+LL F + L+E+ H+++ Sbjct: 475 SVAVGVEPGNTEL-KDLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEKGHVYVAM 533 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE KQ +LE + K GK+ ++RFKGLGEM QL+ET MD Sbjct: 534 PPLFRIDVGKEVFYALDEHEKQGVLERIEAEKKRGKVSVTRFKGLGEMNPLQLRETTMDP 593 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+++ ++ + +T ++ L+ K A +R +++ + + Sbjct: 594 DTRRLVQLTVD----AGDETNTLLDMLLAKKRAADRKSWLESKGHLAE 637 >gi|163803900|ref|ZP_02197740.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4] gi|159172299|gb|EDP57187.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4] Length = 626 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 250/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDTKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + ++Y+ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDHKWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YPVLPEVPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LS+ I++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDIFDRCSYVLSIKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K+ ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDGEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQSNGDMAE 625 >gi|254284215|ref|ZP_04959183.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B] gi|219680418|gb|EED36767.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B] Length = 629 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 252/647 (38%), Positives = 362/647 (55%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V+L Sbjct: 2 SQYNADAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHADQIDVTL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +TVVDNGRG+PV+ HP+ +E+IL+TLHAGGKF ++ Y+ SGGLHGVG+SV Sbjct: 59 HADGSITVVDNGRGMPVDQHPEL-GLPGVEVILSTLHAGGKFSDTNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L VT+ R I +F G L + + GT + F PDP F Sbjct: 118 VNALSTYLEVTIRRDGQIHRMRFEGGDKTGDLAPIDTCGKRNTGTGLRFLPDPSYFDSAH 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL + ++KA L ++ +K+ + +Y+ G+ YL + Sbjct: 178 -FSLPRLNHVLRAKAVLCPGLRVTLFDEKKNEKAE-------WYYEDGIADYLADATIDY 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 +I + FTG V+WAI W E E+ SY N I T +GGTH +GLR L Sbjct: 230 PVIPEKPFTGSFSGPTD---AVDWAIQWLPEGGEVLAESYVNLIPTAQGGTHVNGLRSGL 286 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ EL R + + +D+ +LS + +P+F+GQTK +L S +A V Sbjct: 287 LEAMREFCELRNLLPRGVKLTPEDIWDRCAYLLSSKLADPQFSGQTKERLSSREAAGFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ +A L E I R++ RLR ++V RK LPGKLADC+ Sbjct: 347 GVAKDAFSLWLNQHTGDAELLAELCINRAQARLR--SAKKVVRKKVTSGPALPGKLADCT 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S++I +Q++ ++ Sbjct: 405 TEDPARGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEIDSQEILASQEVHNIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S + LRY K+ I+ DAD DG HIA+L+ F + L+ H+F+ P Sbjct: 465 VALGIDPGSDDL-DGLRYHKICILADADSDGLHIATLICALFLRHFRPLVRAGHVFVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K +LE + + K + RFKGLGEM QL+ET MD + Sbjct: 524 PLYRIDVGKEVHYALDESEKNGVLERLQAEKSRAKPNVQRFKGLGEMNPPQLRETTMDPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + S DT + + L+ K A +R +++ + + Sbjct: 584 TRRLVQLVLE----SDDDTNSTFDMLLAKKRAGDRKSWLESKGDLAE 626 >gi|296104690|ref|YP_003614836.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059149|gb|ADF63887.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 630 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEITFKDNVNNTE-------QSWCYADGLNDYLCEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T GGTH +GLR Sbjct: 230 LPTLPEKPFVGNFTGDTE---AVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAEMLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLTISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627 >gi|269960215|ref|ZP_06174590.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3] gi|269835022|gb|EEZ89106.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3] Length = 626 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 250/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVVGTCGRRNRGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + ++++ GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNNKDYKWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +++ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YTVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKIQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-DSLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKDGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SAATMEMMDMLLGKKRADDRRSWLQSNGDMAE 625 >gi|310820411|ref|YP_003952769.1| type II DNA topoisomerase subunit B [Stigmatella aurantiaca DW4/3-1] gi|309393483|gb|ADO70942.1| Type II DNA topoisomerase, B subunit [Stigmatella aurantiaca DW4/3-1] Length = 642 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 263/652 (40%), Positives = 374/652 (57%), Gaps = 17/652 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y + I++LEGLEPVR RP MYIGGTD HHL E++DN++DEVI G+A+ +E Sbjct: 2 AKKETYTGADIQVLEGLEPVRKRPAMYIGGTDGTGYHHLLWEILDNSVDEVINGHASTVE 61 Query: 99 VSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V+L + +TVVDNGRGIPV+ PK K +E+ILTTLHAGGKF+ Y SGGLHGV Sbjct: 62 VTLHKDSRTITVVDNGRGIPVDIMPKL-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNAL+ +L V + R+ Q ++RG +PL+ + R GT ITF PDP+IFG Sbjct: 121 GSSVVNALARKLLVEIKREGKRHVQHYARGKATTPLKVEGPARG-TGTSITFEPDPEIFG 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +K FD + + ++K+YL + W E + GG+ YL + Sbjct: 180 EKLKFDPELIRERLEAKSYLHKGMTVVWKD-----ETASPATSVTYKHDGGIAEYLNKVV 234 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRV 336 R+ +E A+ W E + I SY N I T +GGTHE+GLR Sbjct: 235 AERNKPVVPPGGAVFYHARDSEVRLEAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRG 294 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 A+ + ++ Y E + +++ ++D+ ILS ++ EP+F GQTK +L + + Sbjct: 295 AVVKAVRNYIETHNLSPKGVTLTAEDIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQ 354 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKL 453 V+ LR + +L N + +I + R R + + +L LPGKL Sbjct: 355 VDGVLRPALEKWLNDNKSIGEAAVARIILAARAREASRAASQAVSRKTAVSHRLNLPGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS +ELF+VEGDSAGGSAKQ R+R QA+LPLRGK+LN A ++K+ N+++ Sbjct: 415 ADCSSTEPSTSELFLVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVATNKEL 474 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 D+V ALGC S + LRY ++ ++ DAD DG HIA+LLLTFFY+ + LIE + Sbjct: 475 QDIVSALGCGIGSDFDLSKLRYGRIFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVH 534 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PPL+++ G ++ +A DE + +I+ E K G K I RFKGLGEM A +LK T + Sbjct: 535 IAQPPLYKVEIGKETYWALDEADRDRIVRE-KAKGNAKPNIMRFKGLGEMTADELKTTTL 593 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D +KR L+V I+ L +T IN L+G RFKFI ERA + D+ Sbjct: 594 DPHKRMSLQVTIDNPL----ETDRVINDLLGKDVSARFKFIMERAGEVQDLD 641 >gi|88797038|ref|ZP_01112628.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297] gi|88779907|gb|EAR11092.1| DNA topoisomerase IV, B subunit [Reinekea sp. MED297] Length = 631 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 247/648 (38%), Positives = 363/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + +NY A +I +L GL+PVR RPGMY TD +HL EVIDN++DE + GYA+ ++V Sbjct: 2 SQNNYSAEAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALGGYADQVDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G L+V DNGRG+PV+ HP+ +E+ILT LH+GGKF Y+ SGGLHGVG+ Sbjct: 59 ILYKDGSLSVTDNGRGMPVDIHPEH-GIPGVELILTRLHSGGKFSGKNYQFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGD 218 SVVNALS+ L V+V R I F G +E + + GT + F PD F Sbjct: 118 SVVNALSEVLEVSVKRDGKIHRMGFKGGEKAMDMEVVGECKKKDTGTTVRFMPDASYFDT 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + +++ E + +++ GL+ YL + Sbjct: 178 G-KFLVSRLKHVLRAKAVLCPGLRINFINEEK-------DETDTWFYEDGLRDYLTSTTS 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + E FTG V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 AYETLPEEPFTGSFSSD---EEAVDWAVQWLPEGGEGLFESYVNLIPTPQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 + ++++ E R + + +D+ +LS +++P+FAGQTK +L S A Sbjct: 287 GMLEALREFCEYRNLLPRGVKLSPEDVWDKCSYVLSFKMQDPQFAGQTKERLSSRQASAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F YL Q+ A L E I + R+R+ K +V RK LPGKLAD Sbjct: 347 ISGVVKDAFALYLNQHTDIAELLAELAITNANARMRKAK--KVARKKVTTGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS N A ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ + ++ + Sbjct: 405 CSGNDAMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSELLASDEVHN 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S+ E LRY KV I+ DAD DG HIA+LL F + L+E H+++ Sbjct: 465 IAIALGVDPDSESV-EGLRYGKVCILADADSDGLHIATLLCALFVRHFRKLVEDGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ G + YA D++ ++ IL K + KGKI+I RFKGLGEM QL+ET MD Sbjct: 524 MPPLYRVDIGKEVFYALDDDEREGILNRLKAEKKKGKIQIQRFKGLGEMNPLQLRETTMD 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 N R L+++ I + +++ L ++ +R +++ + + Sbjct: 584 PNTRRLVQLTIEEGDQTMEIMDML---LAKKRSGDRKIWLESKGDLAE 628 >gi|323491055|ref|ZP_08096247.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546] gi|323314719|gb|EGA67791.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546] Length = 626 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 247/645 (38%), Positives = 355/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R +GT + F PD F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDASYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ ++ + + GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFTDK-------VNGNDYRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +++ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YAVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDSFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN +++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSPDQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDTDNL-DGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ ILE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKEGILERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SDATMEMMDMLLGKKRADDRRTWLQSNGDMAE 625 >gi|256832653|ref|YP_003161380.1| DNA gyrase subunit B domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686184|gb|ACV09077.1| DNA gyrase subunit B domain protein [Jonesia denitrificans DSM 20603] Length = 723 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 239/717 (33%), Positives = 350/717 (48%), Gaps = 68/717 (9%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P ++Q + +Y A + +LEGLE VR RPGMYIG TD + + H E+IDN++DE + G Sbjct: 12 PLVSSQIPTSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGIMHCLWEIIDNSVDEALGG 71 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + I V+L + +TV DNGRGIPV+ PK S +E++ T LHAGGKF +Y SG Sbjct: 72 HCTDITVTLHADTSVTVEDNGRGIPVDIEPK-TGLSGVEVVYTKLHAGGKFGGGSYTASG 130 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----------------- 195 GLHGVG SVVNALS L V V R + + F RG P + Sbjct: 131 GLHGVGASVVNALSARLDVEVTRASKVHVMTFRRGEPGIFHDTDVDRPSPESRFDAFVNR 190 Query: 196 ------KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 ++ R GT++ + D +IF A F+ L+ + ++L + ++ Sbjct: 191 SELRVARKAKRGLTGTKVRYWADRQIFPTSAVFNYDELVARARQTSFLVPGLTITIRDER 250 Query: 250 EIAEK--YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT--------------- 292 + P +E F GG +++ + L + F G Sbjct: 251 AVPGTPGEHGPYEESFVHDGGAVDFVEFLAPDVPLTGTWRFQGTGSFKETVPVLDNNGHL 310 Query: 293 -EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 ++ V+ A+ W S+ N I T +GGTH G L + ++K E Sbjct: 311 VSQEVERDCVVDIALRWGNGYDTTVRSFVNIIATPKGGTHLVGFEQGLVKYLRKAVETNA 370 Query: 351 NKRAISIISDDLM-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENA 399 K +S + +L+V + EP+F GQTK L + + + VE+ Sbjct: 371 RKLKVSTKDNQERIDKEDILAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVSKVVEDN 430 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQ 458 L+ F + + LLE ++ R+ RKQ+E++R+ A+ LP KLADC Sbjct: 431 LKALFTSTKRDDKAHTSLLLEKIVAEMRARVSARKQKEISRRKNALESSTLPAKLADCRT 490 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + +ELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + N + ++Q Sbjct: 491 HDVTRSELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASISDMLRNAECASIIQ 550 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 +G + + E RY KVI+MTDADVDGAHI +LLLT F++ M LI + +F PP Sbjct: 551 VIGAGSGRSFDLEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPLIAEGRVFAAVPP 610 Query: 579 LFRI------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKET 631 L RI + +Y + E L + +K G+ K +I R+KGLGEM A QL ET Sbjct: 611 LHRIEVVGSGRRKNSYIYTYSEAELTATLAKLRKQGRAFKEDIQRYKGLGEMDADQLAET 670 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 MD RTL RV ++ +++ LMG R +FI + AS +D + Sbjct: 671 TMDPAHRTLRRVTVDH----AHAAEEAFELLMGQHVAPRKEFIIQGASQLDRAQIDA 723 >gi|254291773|ref|ZP_04962558.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226] gi|150422285|gb|EDN14247.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226] Length = 626 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 360/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I+V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R ++ F G ++ L R GT + F PD K F Sbjct: 118 VVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 178 N-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YILLPEEPFTGEFTAQTEA-ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC+ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 467 ALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDQEKEGVLERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625 >gi|322831363|ref|YP_004211390.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602] gi|321166564|gb|ADW72263.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602] Length = 631 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 247/651 (37%), Positives = 360/651 (55%), Gaps = 27/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 SQSTYNADSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ H + +E+I LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHEDQSLEVIDDGRGMPVDIHAE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R ++ F G + L + GT + F PD F Sbjct: 118 SVVNALSKRVEVAVKRGGEVYEMAFENGDKVQDLHVTGTCGKRNTGTSVHFWPDGSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEILFKDKVNNTE-------QRWCYDDGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEKAFVGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ RLR ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELCISSAQRRLR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-TQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEQEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 N R L+++ I++D + T ++ L+ K +++R ++QE+ + + Sbjct: 583 NTRRLVQLTIDED--DIDQTLRMMDMLLAKKRSEDRRNWLQEKGDTAE-LD 630 >gi|283787161|ref|YP_003367026.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168] gi|282950615|emb|CBG90287.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168] Length = 630 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDLVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G E V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFEGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQSAEMLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLTISD--EDDQRTNAVMDMLLAKKRSEDRRNWLQEKGDLAD 627 >gi|168238136|ref|ZP_02663194.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737821|ref|YP_002116136.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713323|gb|ACF92544.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289017|gb|EDY28388.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 630 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 366/650 (56%), Gaps = 27/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAPQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 583 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 629 >gi|149916750|ref|ZP_01905252.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1] gi|149822467|gb|EDM81856.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica SIR-1] Length = 644 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 252/659 (38%), Positives = 381/659 (57%), Gaps = 22/659 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 + + + +Y A SI++L+ ++ VR RPGMYIGG +++ LHH+ E++DN++DEVI Sbjct: 2 AKKKSTTAKGKSYGAESIQLLQNIDHVRARPGMYIGGVNKEGLHHIVWEILDNSVDEVIN 61 Query: 92 GYANLIEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 G+A+ I+V+L+ + +T+ D+GRGIPV+ HP+ + + T L AGGKFD +Y+ Sbjct: 62 GHASQIKVTLEADRRGITISDDGRGIPVDKHPEL-KVPAVVAVFTQLGAGGKFDGESYKH 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG +V NAL++ L V V R + F+RG+ + ++ KVR GT + R Sbjct: 121 SGGLHGVGAAVANALAERLEVRVKRDGKLHEVIFNRGVQEGRMSRRGKVRG-TGTEVFLR 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PDP++FG KA D L ++K+YL +K ++ + + E F+ G+ Sbjct: 180 PDPEMFGQKATLDPDVLRGRIEAKSYLHKGLKITFTDE-------STGKSEVFHHADGIA 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 YL + R + E+ + V A E + SY N + T +GGTH Sbjct: 233 EYLDKLIAVRGKAAVHKGRFYLERSEEPKLEVALAWTEATE-SLVASYVNGVPTPDGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 E GLR AL + I+ Y + + + +SI +D+ + +LS ++ EP+F QTK +L + Sbjct: 292 EKGLRNALGKAIRAYIDAHKLAPKGVSIALEDIREGLIALLSTYVLEPQFQSQTKNRLNN 351 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE---VNRKTAIRK 446 + VE A+ + +L +N ++ ++ + R R + K Sbjct: 352 PEVATQVEGAIAPVLEQWLHENRSIGDAIVARIVLAARARAASRAAANSVSRKNAGQVSK 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 + LPGKLADC+ N ELFIVEGDSAGGSAK RNR+ QA+LPLRGK+LN A A + Sbjct: 412 IGLPGKLADCANNNPAKCELFIVEGDSAGGSAKMGRNRNTQAILPLRGKVLNAAQASVAR 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + N+++ ++V+ALGC + E LRY +VI++ DAD DG HIA+LLLTFFY+ M +L Sbjct: 472 VMKNEELGNIVKALGCGIGKDFNIEGLRYHRVILLMDADSDGHHIATLLLTFFYKYMPEL 531 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I + H++L PPLFR+ G ++ +A D+ H Q+IL K +GK EI RFKGLGEM+ Sbjct: 532 IRKGHVYLAQPPLFRVDVGKETHWAADDAHLQRILAGIK---RGKPEIQRFKGLGEMMPK 588 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L++T +D KR L+RV I +L T I+ LMG A R++FI ERA+ D++ Sbjct: 589 TLRDTTLDPKKRQLIRVGIEDEL----ATDRVIHDLMGKDASMRYQFIMERAADADELD 643 >gi|225570591|ref|ZP_03779616.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM 15053] gi|225160604|gb|EEG73223.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM 15053] Length = 650 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 248/659 (37%), Positives = 351/659 (53%), Gaps = 33/659 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YDA SI ILEGLE VR RPGMYIG K L+HL E++DNA+DE +AG + I Sbjct: 12 AKKNTYDADSISILEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGCCDEIR 71 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L+ +G TV DNGRG+PV H K S I+ TTLHAGGKFD+S+Y+ SGGLHGVG Sbjct: 72 VTLEKDGSATVSDNGRGVPVGLHAK--GVSAERIVYTTLHAGGKFDDSSYKTSGGLHGVG 129 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----KEKVRNKRGTRITFRPDPK 214 SVVNALS + V V+R+ I ++ RG P+ LE K K GT+I F PD Sbjct: 130 SSVVNALSAYMDVQVSREGYIHHDRYERGKPVIELEDGLLPKTGKTKKTGTKINFLPDDT 189 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F A + AYL+ + + + PE+ ++ P G+ +++ Sbjct: 190 IFEK-TRFRADEVKSRMHETAYLNPTLTIIFEDLR-----GETPERIVYHEPDGILGFIK 243 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESG 333 + + K +G VE A + E + + +CN I EGGTH +G Sbjct: 244 ELNQKNEAVHEP-VYFKGVAEGI---EVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTG 299 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + T + +YA ++ + D+ I+S+ +P F GQTKTKL + D Sbjct: 300 FKTTFTTVMNQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPD 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + V D Y +N K++ + ++ R K + G Sbjct: 360 AAKAVSKVTNDEITRYFDRNLDNLKKVIACAEKAAKIRKTEEKAKTNLLTKQKYSFDSNG 419 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLA+C A E+FIVEGDSAGGSAK AR+R QA+LP+RGKILNV A +KI N Sbjct: 420 KLANCESRDASRCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKILANA 479 Query: 512 QIMDLVQALGC----RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I ++ A GC + + LRY+K+IIM DADVDGAHI++LLLT FY+ M +LI Sbjct: 480 EIKTMINAFGCGFSEGYGNDFDISGLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELI 539 Query: 568 EQKHLFLISPPLFR-ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 + H+++ PPL++ I + + Y +D+ K LE +++ G + R+KGLGEM A Sbjct: 540 YEGHVYVAMPPLYKAIPKKGEEEYLYDD----KALERYRRKHDGPFTLQRYKGLGEMDAQ 595 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET ++ R L R+EI + T+ LMGT+ R FI E A+ + + Sbjct: 596 QLWETTLNPETRLLKRIEIEDARMASGVTE----MLMGTEVPPRRTFIYENATEAE-LD 649 >gi|37527805|ref|NP_931150.1| DNA topoisomerase IV subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787241|emb|CAE16322.1| topoisomerase IV subunit B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 631 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+IL+ LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HSDQSLEVIDDGRGMPVDIHPE-EGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + I+ F G + L + GT + F PD + F D Sbjct: 120 VNALSKRIEVTVRRDSQIYQIAFENGDKVQELTVIGSCGKRNTGTGVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E +++ + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFKDKINGTE-------QKWCYADGLTDYLMAAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 TTLPAAPFVGTFSG---ATEAVDWALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLAADDIWDRCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN EA +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPD-SHDLSQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +L+ + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKSAVLDRLSRK-RGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++T ++ L+ K +++R ++QE+ +D Sbjct: 585 RRLVQLTIDD--ENYQETFSMMDMLLAKKRSEDRRNWLQEKGDTVD 628 >gi|329298650|ref|ZP_08255986.1| DNA topoisomerase IV subunit B [Plautia stali symbiont] Length = 631 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 366/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 SQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R I+ F G + + V + GT + F PD + F D Sbjct: 118 SVVNALSKRVEVTVRRNGEIYQIAFENGDKVQDMAVIGTVGKRNTGTSVHFWPD-ESFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SPRFSVSRLKHLLKAKAVLCPGVEIVFKDKVNDTE-------QTWLYQDGLTDYLNEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLPTLPEKPFVGSFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ Q H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVRQGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ +++ ++ T ++ L+ K +++R ++QE+ D Sbjct: 583 NTRRLVQLTVDE--EDVEQTLRMMDMLLAKKRSEDRRNWLQEKGDLAD 628 >gi|300718429|ref|YP_003743232.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661] gi|299064265|emb|CAX61385.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661] Length = 629 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 360/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADSIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L V + GTR+ F PD F Sbjct: 120 VNALSTRVEVTVRRNAEVYEMAFENGDKVEDLHVTGTVGKRNTGTRVRFWPDVNFFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 180 -FSVSRLSHLLKAKAVLCPGVEIVFKDNVNNTE-------QTWCYADGLTDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PTLPERPFVGAFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E + ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNIQTAEILAEMAVSSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K IL++ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILDQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + D ++ T ++ L+ K +++R ++QE D Sbjct: 585 RRLVQLTVEDDE--VEKTMAVMDMLLAKKRSEDRRNWLQENGHTAD 628 >gi|269956776|ref|YP_003326565.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894] gi|269305457|gb|ACZ31007.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica DSM 15894] Length = 715 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 242/713 (33%), Positives = 344/713 (48%), Gaps = 65/713 (9%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 + + + SA NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE Sbjct: 2 TTTASPESSSAEKNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 + G+A I V L + +TV D+GRGIPV+ PK S +E++ T LHAGGKF +Y Sbjct: 62 LGGFATKIAVVLHADSSVTVTDDGRGIPVDVEPK-TGLSGVEVVFTKLHAGGKFGGGSYT 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--------------- 194 SGGLHGVG SVVNALS L V V R + F RG P + + Sbjct: 121 ASGGLHGVGASVVNALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFI 180 Query: 195 -------KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 R GTR+ + D +IF A F L+ + +L ++ Sbjct: 181 ERSELAVVGRAKRGVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRD 240 Query: 248 DKE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------ 293 ++ P +E F GG ++ + + ++ G Sbjct: 241 ERGLPGTPGADGPHEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERG 300 Query: 294 ----KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 ++ V+ A+ W ++ N I T +GG+H +G L + ++K E Sbjct: 301 HMSPREVQRDCEVDIALRWGTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEA 360 Query: 349 TQNKRAISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVE 397 + IS DD+ +++V + EP+F GQTK L + + RTVE Sbjct: 361 NARRLKISAKDGGERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVE 420 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADC 456 L + +A+ LL+ V+ R+ RKQ+E++R+ A+ LP KLADC Sbjct: 421 KQLGAILTSTKRDDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADC 480 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + N + + Sbjct: 481 RSDDVERSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAI 540 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +Q LG + + + RY KV++MTDADVDGAHI +LLLT FY+ M L+E +F Sbjct: 541 IQVLGAGSGRSFDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAV 600 Query: 577 PPLFRIT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLK 629 PPL RI +G + +Y + E Q L+ + GK K +I R+KGLGEM A QL Sbjct: 601 PPLHRIEVYGARGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLA 660 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD RTL RV + + LMG+ R FI A +D Sbjct: 661 ETTMDPRHRTLRRVT----AQHAEAAERVFELLMGSDVAPRKDFIISGAESLD 709 >gi|83648377|ref|YP_436812.1| DNA topoisomerase IV subunit B [Hahella chejuensis KCTC 2396] gi|83636420|gb|ABC32387.1| DNA topoisomerase IV, B subunit [Hahella chejuensis KCTC 2396] Length = 687 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 259/674 (38%), Positives = 370/674 (54%), Gaps = 26/674 (3%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73 P + + + + + S+NY+A SI +L GL+PVR RPGMY TD Sbjct: 32 PIQSIAGRERRPKARRQVTSCIQEKLLSNNYNADSIEVLNGLDPVRRRPGMY---TDTSR 88 Query: 74 LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 +HL EVIDN++DE +AG+A ++V L +G L+V D+GRG+PV+ H K +E+I Sbjct: 89 PNHLAQEVIDNSVDEALAGHARQVDVVLYKDGSLSVTDDGRGMPVDIH-KEEGMPGVELI 147 Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193 LT LHAGGKF + Y+ SGGLHGVG+SVVNALS L V + R + F+ G S L Sbjct: 148 LTKLHAGGKFSHKNYQFSGGLHGVGVSVVNALSLNLEVLIRRDGKVHRITFANGDKASDL 207 Query: 194 EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 E + + GT +TF PDPK F F RL + ++KA L +K + + Sbjct: 208 EVIDTCGKRNTGTTVTFLPDPKYFDSP-KFSVLRLRHVLRAKAVLCSGLKVTFKDE---- 262 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312 EK+E+Y+ GLK YL + E F G+ V+WA+ W E Sbjct: 263 ---NTGEKDEWYYEDGLKDYLSGATNEFVTLPQEPFIGQMAGNTE---AVDWAVQWLPEG 316 Query: 313 PE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGI 369 E SY N I T +GGTH +GLR L ++++ E R + + +D+ + Sbjct: 317 GELVAESYVNLIPTAQGGTHVNGLRTGLLEALREFCEFRNLLPRGVKLSPEDVWDRCAYV 376 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV I+EP+F+GQTK +L S + V ++D F +L ++ EA +L E I ++ R Sbjct: 377 LSVKIQEPQFSGQTKERLSSRECATFVSGVVKDSFSLWLNKHTAEAEQLAELAINNAQSR 436 Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 LR ++V RK LPGKLADCS + A ELF+VEGDSAGGSAKQAR+R QAV Sbjct: 437 LR--AAKKVARKKITSGPALPGKLADCSGSDAMRGELFLVEGDSAGGSAKQARDREFQAV 494 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 +PLRGKILN SE+I +Q++ D+ A+G S E LRY K+ I+ DAD DG Sbjct: 495 MPLRGKILNTWEVDSEQILASQEVHDIAVAIGVDPGSSNL-EGLRYGKICILADADSDGL 553 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHG 608 HIA+LL F + L+E H+F+ PPL+RI YA D+ KQ IL+ + Sbjct: 554 HIATLLCALFVKHFRPLVEAGHVFVAMPPLYRIDVAKDVYYALDDYEKQGILDRIVAEKK 613 Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668 KGK + RFKGLGEM QL+ET M + R L+++ + ++ + L +A Sbjct: 614 KGKPNVQRFKGLGEMNPLQLRETTMAPDTRRLVQLTVEIADDTEEKMDML---LAKKRAS 670 Query: 669 ERFKFIQERASFID 682 +R ++++ + + + Sbjct: 671 DRREWLESKGNLAE 684 >gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group] Length = 753 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 236/694 (34%), Positives = 373/694 (53%), Gaps = 48/694 (6%) Query: 27 GEIPDSPAFANQSASDNYDASSIR------------------------ILEGLEPVRMRP 62 S A + + Y A++++ +LE L+ VR RP Sbjct: 72 ASTAASEAMQEKRVAGEYTAANVQHILWIPYFHGHILWIPYFDGGSWSVLEALDGVRTRP 131 Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 GMYIG T + LHHL E++DNA+DE AGYA ++V L G+ ++V DNGRGIP + HP Sbjct: 132 GMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHP 191 Query: 123 KFPNKSTLEIILTTLHA--GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 + KS +E +LT +HA S Y +SGGLHGVG+SVVNALS+ L VTV R + Sbjct: 192 Q-TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEY 250 Query: 181 SQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 Q +SRG ++ L + + +++GTRI F PD IF FD + + A+L Sbjct: 251 RQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFL 310 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + + + + E + E+ + GGL Y++ ++ + + E G Sbjct: 311 NPELTIALTKE----EDDLQVQHNEYCYAGGLVEYVKWLNTDKKSLHDP-IAFRKEMDGI 365 Query: 298 HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAI 355 V + + Y N+I T +GGTH GL+ +LTR I +A+ ++ + I Sbjct: 366 T-VDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDI 424 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 S+ + + I++V + PEF GQTKT+L + + +R VE ++++ YL +P Sbjct: 425 SLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVL 484 Query: 416 TKLLEWVIE-RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 +L + +R + V K+ ++ LPGKLADC+ + +E+FIVEGDSA Sbjct: 485 DSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSA 544 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-L 533 GGSAKQ R+R QA+LPLRGKILN+ + N++I +L+ ALG + + ++ L Sbjct: 545 GGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEAL 604 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RY K++I+TDADVDGAHI +LLLTFF++ L ++ +++ PPL+++ +G ++ Y +D Sbjct: 605 RYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYD 664 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + ++++ F + I RFKGLGEM+ +QL ET MD +R L ++++ Sbjct: 665 DADLKELVNTFPTN--ASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVED----AA 718 Query: 654 DTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 + + LMGT+ D R + IQ AS + + + Sbjct: 719 EANVVFSSLMGTRVDVRKQLIQNAASMVNLEHLD 752 >gi|320334068|ref|YP_004170779.1| DNA topoisomerase [Deinococcus maricopensis DSM 21211] gi|319755357|gb|ADV67114.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus maricopensis DSM 21211] Length = 653 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 253/654 (38%), Positives = 358/654 (54%), Gaps = 22/654 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I IL+GLE VR RPGMY+ GGT H L +E+IDN +DE +AG+A+ I+V + Sbjct: 5 EYTADQISILKGLEAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFADTIQVIM 64 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G TV+DNGRGIPV+ K + +E+I LHAGGKF Y++SGGLHGVG SV Sbjct: 65 HADGSATVIDNGRGIPVDIM-KSEGRPAIEVIFMELHAGGKFGQGAYKVSGGLHGVGSSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKIFGDK 219 VNALS L VTV + + + +F RG +PL T+++F PDP +F + Sbjct: 124 VNALSSYLDVTVNKHGKLHNVRFERGELTTPLRVVGPTPADVDWSTKVSFHPDPAVFSEF 183 Query: 220 -AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD R+ + + AYL+G K ++ + +E F+ GG+ + + + Sbjct: 184 ENKFDYDRIRRRLRELAYLTGL-KIVLRDERTDLHAGQV-REEIFHEKGGIANFARALVT 241 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + + + V + A I +Y N I T +GGT +G + A Sbjct: 242 DDTKLLYAEPIVMRGTHSDVEVEVAFIHANTYSADNILTYANMIRTRDGGTPLTGFKTAY 301 Query: 339 TRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + KYA+ ++ + +DL+ ++SV + EP+F Q K KL++ +AQ V Sbjct: 302 TRILNKYAKEKNLVKSGNPVPSGEDLLEGIYCVVSVKLGEPQFESQAKVKLLNSEAQTAV 361 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 + + F +L +NP ++E E + R RK V R + LPGKLAD Sbjct: 362 NAIVGEKFAEFLEENPKIGKIIVEKAAEAARAREAARKARDIVRRSNPLENDDLPGKLAD 421 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +ELFIVEG+SAGGSAK R R QA+LPLRGKILNV A KI N +I Sbjct: 422 CSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKILKNAEIRA 481 Query: 516 LVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 L+ A+G + +LRY KVIIMTDAD+DG HIA+LLLTFF++ M ++EQ Sbjct: 482 LIGAIGAGVEGTGDNMHFDLSNLRYHKVIIMTDADMDGGHIATLLLTFFFRYMRPVVEQG 541 Query: 571 HLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 +L++ PPL+R+T G K Y ++E+ + + ++ + GK K EI RFKGLGEM A QL Sbjct: 542 YLYIAQPPLYRLTVGREKKGTYLYNEDDLRVLTKQATRDGK-KFEIQRFKGLGEMNADQL 600 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +T M+ RTL RV I L ++ LMG++ R FIQE A F + Sbjct: 601 WDTTMNPETRTLKRVSIED----LISANETFEALMGSEVAPRKLFIQENARFAE 650 >gi|309812868|ref|ZP_07706600.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp. Ellin185] gi|308433146|gb|EFP57046.1| DNA gyrase, B subunit, C-terminal domain protein [Dermacoccus sp. Ellin185] Length = 723 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/724 (33%), Positives = 352/724 (48%), Gaps = 68/724 (9%) Query: 19 SSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLF 78 SS ++ K EIP NQ +NY A +++LEGLE VR RPGMYIG TD + L H Sbjct: 2 SSVRVTKVKEIPQVSPSENQ---ENYTARHLQVLEGLEAVRKRPGMYIGSTDGRGLMHCL 58 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 E+IDNA+DE + GY + IEV L +G + V DNGRGIPV+ P+ S +E++ T LH Sbjct: 59 WEIIDNAVDEALGGYCDRIEVILLPDGSVEVRDNGRGIPVDVEPR-TGLSGVEVVFTKLH 117 Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----- 193 AGGKF +Y SGGLHGVG SVVNALS L V V R + + F RG P + Sbjct: 118 AGGKFGGGSYTASGGLHGVGASVVNALSSRLDVEVDRASKTYGMSFRRGEPGTFADGDSS 177 Query: 194 --------------------EKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232 E K R G+R+ + D IF A FD +L+ + Sbjct: 178 DPLAKSPTNPFTPFESGSQLEVVGKARRGVTGSRVRYWADTTIFLKTAQFDYDQLIARAR 237 Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 ++L + ++ +A G P +E F GG+ + + + ++ G Sbjct: 238 QTSFLVPGLTIIIRDERGLAGTPGENGPHEETFLHDGGISEFCEYLAPDAAVTGIWRLQG 297 Query: 291 KT-----------------EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + T V+ A+ W S+ N I T +GGTH + Sbjct: 298 SGSFTETVPVLDESSGHMTSQDVTRECGVDIALRWGTGYETKVRSFVNIIATPKGGTHNT 357 Query: 333 GLRVALTRGIKKYAELTQNKRAI---SIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G AL + KK E+ K + + DD++ +++V + EP+F GQTK L + Sbjct: 358 GFEQALMKVFKKQLEVNARKLKVGNDKVEKDDVLAGLTAVVTVRLAEPQFEGQTKEVLGT 417 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAI 444 + V + +L + LE V+ + R+ R +E RKTA+ Sbjct: 418 AAVRAIVSKVVEKELSAHLTSTKRDDKAQAALLLEKVVAEMKSRISARAHKETQRRKTAL 477 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKL DC +ELFIVEGDSA G+ ARN QA+LP+RGKILNV A Sbjct: 478 ESSSLPGKLKDCRSTDGERSELFIVEGDSALGTGMAARNSEYQALLPIRGKILNVQKASV 537 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 + N + ++Q +G + + + +RY K+I+MTDADVDGAHI +LLLT F++ M Sbjct: 538 GDMLKNAECASIIQVVGGGSGRSFDLDMVRYGKIILMTDADVDGAHIRTLLLTLFFRYMR 597 Query: 565 DLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 L+ ++ PPL R+ + +Y + E+ + + ++K G+ + R+K Sbjct: 598 PLVAAGRVYAAMPPLHRLEVSAQGRAKGEVIYTYSEDEMRATVAAWEKKGRTFKQPQRYK 657 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM A QL ET MD RTL RV + + + + LMG++ R FI A Sbjct: 658 GLGEMDADQLAETTMDPRHRTLRRVTL----KDAEMAEQVFDLLMGSEVAPRKDFIISSA 713 Query: 679 SFID 682 + +D Sbjct: 714 NDLD 717 >gi|260775392|ref|ZP_05884289.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450] gi|260608573|gb|EEX34738.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450] Length = 626 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 251/645 (38%), Positives = 359/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R +GT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNKGTSVHFWPDAKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ +S E ++ + GLK YL ++ Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNGNE-------HKWLYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +++ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YTVLPEEPFTGEFSAETEA-ANWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGDDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDAFSLWLNEKPQLAELLAEVCIANAHRRMR--ASKKVVRKKVASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLNRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-ESLRYGKICILADADSDGLHIATLLCALFTRHFKALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D++ K+ +LE K K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDDEKEGVLERLSKK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SQATMEMMDMLLGKKRADDRRSWLQNNGDLAE 625 >gi|27364066|ref|NP_759594.1| DNA topoisomerase IV subunit B [Vibrio vulnificus CMCP6] gi|37678772|ref|NP_933381.1| DNA topoisomerase IV subunit B [Vibrio vulnificus YJ016] gi|320157449|ref|YP_004189828.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O] gi|27360184|gb|AAO09121.1| DNA topoisomerase IV, B subunit [Vibrio vulnificus CMCP6] gi|37197513|dbj|BAC93352.1| topoisomerase IV, subunit B [Vibrio vulnificus YJ016] gi|319932761|gb|ADV87625.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O] Length = 626 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 249/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ +S ++ ++ + GLK YL ++ Sbjct: 178 N-FSVTRLVNNLRAKAVLCPGLEITFSD-------RVNGKEHQWLYQDGLKDYLIEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGQFSAETEA-ADWAVIWQPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VVKDTFSLWLNEKPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLARTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 467 ALGIDPDSDNL-EGLRYGKICILADADSDGLHIATLLCALFTRHFRALVEAGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K +LE + + KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDAEKDGVLERLSQK-RAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----SDATMEMMDMLLGKKRADDRRSWLQNNGDMAE 625 >gi|117919182|ref|YP_868374.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3] gi|117611514|gb|ABK46968.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3] Length = 628 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 246/645 (38%), Positives = 358/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L+ R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+Y+ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E F G K + SY N I T GGTH +G R L Sbjct: 230 NLMLPEEPFIGSF-KGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ A ILSV +++P+FAGQTK KL S + V Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +RD F +L N A L + I ++ RL+ ++V RK LPGKL DCS Sbjct: 349 IVRDAFSLWLNSNTELAESLADMCINNAQRRLK--ASKKVARKKVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE K+ IL+ ++ KGK++++RFKGLGEM QL+ET MD N Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 R L+++ I+ +++T ++ L+ K + +R +++++ Sbjct: 586 RRLVQLTIDD----VEETDSLMDMLLAKKRSPDRKNWLEDKGDMA 626 >gi|260771893|ref|ZP_05880811.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14] gi|260613185|gb|EEX38386.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14] Length = 643 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 364/645 (56%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA ++V Sbjct: 18 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVI 74 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ N S +E+IL LHAGGKF N +Y+ SGGLHGVGIS Sbjct: 75 LHADQSLEVIDDGRGMPVDIHPE-ENVSGVELILCKLHAGGKFSNKSYQFSGGLHGVGIS 133 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F P+ + D Sbjct: 134 VVNALSKRVEVTVRRDGQVYDIAFEHGEKVSDLTVTGTCGRRNRGTSVHFWPEA-RYFDS 192 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F +RL+ ++KA L ++ ++ E + + GLK YL ++ Sbjct: 193 ANFSVSRLVNNLRAKAVLCPGLEITFTDKVNNNE-------YRWLYEDGLKDYLAEGVKG 245 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ K T + SY N I T +GGTH +GLR L Sbjct: 246 YTLLPEEPFTGEF-KTETEAANWAVIWLPEGGDLITESYVNLIPTPQGGTHVNGLRQGLL 304 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ +++P+FAGQTK +L S V + Sbjct: 305 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQTASFVAS 364 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A L E I + R+R ++V RK LPGKL DCSQ Sbjct: 365 VVKDSFSLWLNEKPQLAELLAEVCISNAHRRMR--ASKKVVRKKIASGPALPGKLTDCSQ 422 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQARNR QA++PLRGKILN ++++ +Q++ D+ Sbjct: 423 QDLSRTELFLVEGDSAGGSAKQARNREFQAIMPLRGKILNTWEVSADQVLASQEVHDISV 482 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + E LRY KV I+ DAD DG HIA+LL F + L+ H+++ PP Sbjct: 483 ALGIDPDNDDLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVRAGHVYVAMPP 541 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K+ I+E K KI + RFKGLGEM QL+ET MD N R Sbjct: 542 LYRIDCGKEVHYALDDNEKKAIIERLSSK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 600 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ D K+T + ++ L+G K AD+R ++Q + Sbjct: 601 RLVQLTIDDD----KETDEMMDMLLGKKRADDRRSWLQRNGDMAE 641 >gi|270263149|ref|ZP_06191419.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13] gi|270042837|gb|EFA15931.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13] Length = 658 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 250/658 (37%), Positives = 364/658 (55%), Gaps = 26/658 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 P + + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE Sbjct: 19 PSNHEKNSTMTQSTYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEA 75 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A I+V L + L V+D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ Sbjct: 76 LAGHAKRIDVILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQ 134 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 SGGLHGVGISVVNALS + V V R ++S F G + L + GT I Sbjct: 135 FSGGLHGVGISVVNALSTRVEVNVKRDGNVYSIAFENGDKVQELAVTGSCGKRNTGTSIH 194 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD + F D F +RL + ++KA L V+ + E + + + G Sbjct: 195 FWPD-EKFFDSPRFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTE-------QRWCYQDG 246 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDE 326 L YL + + F G V+WA+ W E E SY N I T + Sbjct: 247 LTDYLMEAVNGLITLPEAPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQ 303 Query: 327 GGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTH +GLR L ++++ E R + + ++D+ +LSV +++P+FAGQTK Sbjct: 304 GGTHVNGLRQGLLDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 363 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L S V ++D F +L QN A +L E I ++ RLR ++V RK Sbjct: 364 RLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRLR--AAKKVVRKKLTS 421 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+ Sbjct: 422 GPALPGKLADCTSQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 481 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +Q++ D+ A+G S+ LRY K+ I+ DAD DG HIA+LL F + Sbjct: 482 EVLASQEVHDISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFSS 540 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L++ H+++ PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM Sbjct: 541 LVKGGHVYVAMPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNP 599 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 QL+ET +D N R L+++ ++ D + T ++ L+ K +++R ++Q++ D Sbjct: 600 LQLRETTLDPNTRRLVQLTVSDD--DVVQTLAMMDMLLAKKRSEDRRNWLQDKGDMAD 655 >gi|284028009|ref|YP_003377940.1| DNA gyrase subunit B [Kribbella flavida DSM 17836] gi|283807302|gb|ADB29141.1| DNA gyrase, B subunit [Kribbella flavida DSM 17836] Length = 678 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 248/686 (36%), Positives = 367/686 (53%), Gaps = 18/686 (2%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 + P ++ E+P S ++ YDAS+I++LEGL+ VR RPGMYIG Sbjct: 1 MTDEPTETDAIPSADDTGTEVPLSVIPSSV-VEKEYDASAIQVLEGLDAVRKRPGMYIGS 59 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 T E+ LHHL EV+DNA+DE +AGY + I V+L +G + VVDNGRGIPV+ + K Sbjct: 60 TGERGLHHLVYEVVDNAVDEALAGYCDKIVVTLLADGGVRVVDNGRGIPVDIV-ESEGKP 118 Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188 + ++LT LHAGGKF Y++SGGLHGVG+SVVNALS L V V + ++Q F+ G+ Sbjct: 119 AVTVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSSRLQVDVRKNGKAYTQSFTVGV 178 Query: 189 PLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 P + L + + GT ITF P P +F + L + A+L+ ++ + Sbjct: 179 PDADLAEVG-TSDSNGTTITFWPSPDVFET-TTYSYETLSTRFREYAFLNKGLELVIRDE 236 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + G+P ++ F + GL Y++ R + S + + + ++E A+ W Sbjct: 237 RPDHTPEGVPVEQSFKYDDGLVDYVKYLTGIRETVHSNVIAFEAAQADD-SLSLEVAMQW 295 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ NTI T EGGTHE G R ALT + + E K+ + DD+ Sbjct: 296 SGSFQESVHTFANTINTHEGGTHEEGFRAALTSLVNSFGEDQGMIKKKEDRLTGDDVREG 355 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + P+F GQTKTKL + + + V+ + D + QNP E +++ Sbjct: 356 LTAIISVKLGNPQFEGQTKTKLGNTEVKGFVQRVVNDRLGAWFEQNPAEGREIIRKATAA 415 Query: 426 SEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 + R+ RK R+ NRK + LPGKL+DC E++IVEGDSAGGSAK R+ Sbjct: 416 ASARIAARKARDLARNRKGLLGGGGLPGKLSDCQSTNPEECEVYIVEGDSAGGSAKGGRD 475 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV A +K+ N ++ ++ ALG + EE LRY K++IM D Sbjct: 476 PKFQAILPIRGKILNVEKARIDKVLQNNEVQAIISALGTGIHEDFDEEKLRYHKIVIMAD 535 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILE 602 ADVDG HI +LLLT ++ M LIE+ H++ PPL++I + A+ E K +L Sbjct: 536 ADVDGQHIRTLLLTLLFRFMRPLIERGHVYAAQPPLYKIRWSNSAHELAYTEREKDGLLA 595 Query: 603 EFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + GK + R+KGLGEM +L ET MD R LL++ ++ ++ Sbjct: 596 AGFEAGKKLPKENATQRYKGLGEMNPQELWETTMDPANRVLLQITLDD----AARADETF 651 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + + Sbjct: 652 ATLMGDDIEARRNFIQRNAKDVRFLD 677 >gi|283836435|ref|ZP_06356176.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220] gi|291067809|gb|EFE05918.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220] Length = 630 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLSEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + TV+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGETE---TVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLIIDD--EDDQRTNAVMDMLLAKKRSEDRRNWLQEKGDLAD 627 >gi|237729956|ref|ZP_04560437.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2] gi|226908562|gb|EEH94480.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2] Length = 630 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 248/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGDKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLSEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + TV+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFSGETE---TVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQSAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLIIDD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD 627 >gi|146313079|ref|YP_001178153.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638] gi|145319955|gb|ABP62102.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638] Length = 630 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 360/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R + + F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVHNIAFENGDKVQELQVIGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F R+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVTRMTHILKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFLGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNIQTAEMLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREFQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+ + Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLIISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627 >gi|15186713|dbj|BAB62879.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae] Length = 619 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 225/630 (35%), Positives = 349/630 (55%), Gaps = 32/630 (5%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD LHHL E++DNA+DE ++G+ N I+V ++ +G +TV D+GRG+P H Sbjct: 1 MYIGSTDGTGLHHLVWEIVDNAVDEALSGFGNRIDVIINKDGSITVTDHGRGMPTGMH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS L V + R I+ Q+ Sbjct: 59 AMGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSVVNALSSWLEVEIIRDGAIYRQR 118 Query: 184 FSRG-IPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 F G P++ L+K ++K GT ++F PD +F F + + + A+L V Sbjct: 119 FENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI-DFKFNTIAERLKESAFLLKNV 177 Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 + ++ E EF++ G++ +++ E++ ++ +F E++ Sbjct: 178 TLTLTDNRSE-----EAEHLEFHYENGVQDFVEYLNEDKETLTPIMFFEGEEQEFHIEVA 232 Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 +++ + + I S+ N + T +GGTHE+GL+ A+T+ + YA T ++ ++ Sbjct: 233 LQYNDGFSDN---ILSFVNNVRTKDGGTHETGLKSAITKSMNDYARKTGLLKEKDKNLEG 289 Query: 360 DDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 D ILS+ + +F GQTK KL S A+ V+ + + ++L++N A+ Sbjct: 290 SDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEKLTYFLMENGDLASN 349 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRL---PGKLADCSQNIAHGTELFIVEGDSA 474 L+ I+ + R RK R+ +R K GKL A EL++VEGDSA Sbjct: 350 LIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSA 409 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQ R+R QA+LPLRGK+LN A A I N++I ++ +G + +D+ Sbjct: 410 GGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTIGAGVGPDFNIDDIN 469 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVY 590 Y+KVIIMTDAD DGAHI +LLLTFFY+ M L+E+ H+++ PPL+++++G Y Sbjct: 470 YDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEY 529 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A + +++ ++F K + R+KGLGEM A QL ET M+ RTL+RV I Sbjct: 530 AWTDIELEELRQKFGKGSL----LQRYKGLGEMNADQLWETTMNPETRTLIRVTIED--- 582 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASF 680 L + +N LMG K R ++I++ F Sbjct: 583 -LARAERRVNVLMGDKVPPRRQWIEDNVKF 611 >gi|15828843|ref|NP_326203.1| topoisomerase IV subunit B [Mycoplasma pulmonis UAB CTIP] gi|14089786|emb|CAC13545.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis] Length = 642 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 231/647 (35%), Positives = 343/647 (53%), Gaps = 33/647 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y +++L+GLE VR RPGMYIG TD LHHL E+ DNA+DE +AGYA++I+VSL Sbjct: 4 YTVDDLKMLKGLEAVRKRPGMYIGSTDINGLHHLVWEIFDNAVDEALAGYASIIKVSLTK 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 N + V DNGRGIPVE H KS +E++ T LHAGGKF Y SGGLHGVG SVVN Sbjct: 64 NQSIRVEDNGRGIPVEKH--SSGKSGVELVFTELHAGGKFSEGAYRTSGGLHGVGSSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS EL V+V + + KF G + K NK+GT + F P+ +IF A F Sbjct: 122 ALSKELTVSVFKDGFEYRTKFENGDTIVEKTHKVGPSNKKGTIVEFLPNYEIFKR-AQFL 180 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 + + + ++L +K + + +E F + G++ ++ + + Sbjct: 181 PETISERLREASFLIPNLKIVFYDE-------NQNLRETFNYENGIEAFVDFINNGKKTL 233 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIK 343 + + +T+K ++ + + I S+ N + T +GGTHE+ + A T+ + Sbjct: 234 NKVVSFSETKKNIELSCAFQYND---DYSETIISFVNNVKTRDGGTHEAAFKSAFTKTLN 290 Query: 344 KYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENAL 400 YA + + D I+S+ I E EF GQTK KL +++A+ VE + Sbjct: 291 DYAIEKKILKGGKTFEGSDFREGLTAIISLKIPESILEFVGQTKDKLGTIEAKNVVEEIV 350 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK---TAIRKLRLPGKLADCS 457 ++L + EA K+ + E R+ RK R R L GKL Sbjct: 351 SQNLKYWLNEKKQEAEKVFNKFKKAYEARIAARKARNEARTLKSKMKETKILSGKLTPAQ 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+F+VEGDSAGGSAK RNR QA+LPLRGK++N + I N++I ++ Sbjct: 411 SKNPKENEIFLVEGDSAGGSAKSGRNRRFQAILPLRGKVINTEKSRLIDILKNEEISTII 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 AL + ++L+Y K+IIMTDAD DGAHI LLLTFF++ M++LIE+ +++ P Sbjct: 471 NALNTGVGEDFEIKNLKYHKIIIMTDADTDGAHIQVLLLTFFFRYMHELIEKGMVYVALP 530 Query: 578 PLFRIT----QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PLF++T + K YA DE ++I++ +EI R+KGLGEM A QL ET M Sbjct: 531 PLFKVTFKNDKKNKIAYAWDENELKEIVK------NKSVEIQRYKGLGEMNADQLWETTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 + R+L+++ I + ++ LMG + R ++I + F Sbjct: 585 NPETRSLVKITIQD----AAIVERRVSTLMGENVEIRKEWINKNVKF 627 >gi|238918166|ref|YP_002931680.1| DNA topoisomerase IV subunit B [Edwardsiella ictaluri 93-146] gi|238867734|gb|ACR67445.1| DNA topoisomerase IV, B subunit, putative [Edwardsiella ictaluri 93-146] Length = 631 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 255/649 (39%), Positives = 362/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDNGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V+V R I+ F G + L V R GT + F PD + F Sbjct: 120 VNALSRRVEVSVRRDGQIYQMAFENGEKVEDLHVSGTVGRRNTGTSVHFWPDAQFFDSAR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 180 -FSVSRLTHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPEQPFTGTFASDTE---AVDWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQSAELLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I ++ T ++ L+ K A++R ++QE + + + Sbjct: 585 RRLVQLAIED--EDMERTVAVMDMLLAKKRAEDRRNWLQENGNLAE-LD 630 >gi|261495914|ref|ZP_05992336.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308435|gb|EEY09716.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2 str. OVINE] Length = 635 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 255/650 (39%), Positives = 369/650 (56%), Gaps = 26/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+A+ I+V Sbjct: 2 SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L VVDNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGI Sbjct: 59 ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS+ + + + R ++S F+ G+ + L + + GT + F P+PK F Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + E E +Y+ GL YL L Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G + V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L + + ++ E+ + + + +DD+ +LS+ I+EP+FAGQTK +L S A Sbjct: 287 GLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V++ L+D F +L QN + E I ++ R+R ++V RK + LPGKLAD Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S E+LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582 Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+++ + + +T + ++ L+G K A++R +++Q R D Sbjct: 583 PSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632 >gi|219121994|ref|XP_002181340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407326|gb|EEC47263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 727 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 254/710 (35%), Positives = 378/710 (53%), Gaps = 39/710 (5%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGM 64 S + FS P + D+ A+ A+ +Y A I +L+GL+PVR RPGM Sbjct: 27 SCEAFSLYPQARSRPFSNPHYATVEADAVNGASSVAAQSYGAGQITVLKGLDPVRKRPGM 86 Query: 65 YIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKF 124 YIG T LHHL EV+DN +DE +AG+A + ++ +G LTV D+GRGIP + H + Sbjct: 87 YIGSTGPDGLHHLVWEVVDNCVDEALAGHATFVTTTIHADGSLTVTDDGRGIPTDLHSE- 145 Query: 125 PNKSTLEIILTTLHAGGKFD----NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 KS LE +LT LHAGGKFD NS Y++SGGLHGVGISVVNALS+ +HV V R ++ Sbjct: 146 TGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHGVGISVVNALSEFVHVKVDRTPELY 205 Query: 181 SQKFSRGIPLSPLEKKEK-----VRNKRGTRITFRPDPKIF-----GDKAGFDAARLLKM 230 +F RG+P PL+ +K + K GT +TF PD K+F FD++RL Sbjct: 206 QMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPDLKVFKGDNGKPDITFDSSRLKGR 265 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 AYL+ + +++ + + FY GGL Y + ++ + + Sbjct: 266 MDEIAYLNAGLVLTLKDERKSPGR---GRLQVFYHAGGLAEYAELLCRTKTPLFQGTTSS 322 Query: 291 KTEK-----KGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKY 345 + +K K + + I S+CN I T +GG+H GL+ LTR + + Sbjct: 323 RKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTRDGGSHVEGLKACLTRTVNQA 382 Query: 346 AELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDP 403 A+ + + ++ + + I+SV + EPEF GQTK +L + + + V++ L Sbjct: 383 AKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQTKGRLGNPEVRPAVDSLLSAE 442 Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAH 462 P + + R++ RKT + LPGKLADC+ Sbjct: 443 LTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKTLLTSTILPGKLADCASRDPE 502 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +E+FIVEGDSA GSAKQ R+R QA+LPLRGKILN+ A +E+I N ++ L+ ALG Sbjct: 503 ESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERAATERIYQNTELQGLISALGL 562 Query: 523 RTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + + LRY +++IMTDADVDGAHI LLLTFFY+ +L+E H+++ PPL++ Sbjct: 563 GVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYRYQRELVENGHVYIAQPPLYK 622 Query: 582 ITQG----TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 ++ G K YA ++ + ++ + GK+ + RFKGLGEM+ QL T MD + Sbjct: 623 VSVGSGRSRKEGYAFNDTERNTVM--MQALAAGKVSLQRFKGLGEMMPEQLWSTTMDPER 680 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 RT+L+V +N +++ LMG R +FI +A +DD+ Sbjct: 681 RTMLQVTVND----ASMADQTLSILMGDTVAPRKEFISTQAETLRVDDLD 726 >gi|240255313|ref|NP_187638.4| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] Length = 693 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 243/703 (34%), Positives = 378/703 (53%), Gaps = 58/703 (8%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + S S +Y + I++LEGL+PVR RPGMYIG T + LHHL E++DNA+DE Sbjct: 2 SSTMESLQESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST- 147 AG+A+ I+V L + +++ DNGRGIP + HP KS+LE +LT LHAGGKF + Sbjct: 62 AQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHP-ATGKSSLETVLTVLHAGGKFGGKSS 120 Query: 148 -YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK---EKVRNKR 203 Y +SGGLHGVG+SVVNALS+ L V V R F QK+SRG P++ L + R + Sbjct: 121 GYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQ 180 Query: 204 GTRITFRPDPK---IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT I F PD + +F FD + + A+L+ +V + + E+ Sbjct: 181 GTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDV---Y 237 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCN 320 E+++ GGL Y+ ++ + + K T +++W + + Y N Sbjct: 238 SEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSLQWCS--DAYSDTMLGYAN 295 Query: 321 TILTDEGGTHESGLRVALTRGIKK---------------YAELT---------------- 349 +I T +GGTH G++ +LTR + Y+ Sbjct: 296 SIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHAL 355 Query: 350 ---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 N++ IS+ + + I+SV + PEF GQTKT+L + + ++ V+ ++++ Sbjct: 356 RTINNEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTE 415 Query: 407 YLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTE 465 YL +P ++ + + L ++ V K+ ++ LPGKLADCS +E Sbjct: 416 YLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESE 475 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 +FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ + N++I +L+ LG + Sbjct: 476 IFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVK 535 Query: 526 -SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584 + +E+LRY K+II+TDADVDGAHI +LLLTFF++ L + +++ PPLF++ + Sbjct: 536 GEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 595 Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 G ++ Y +D+ +KI F G I RFKGLGEM+ +QL ET M+ + R L ++ Sbjct: 596 GKQAHYCYDDAALKKITASFP--GNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLV 653 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 ++ +T + LMG + D R + I+ A+ ++++ Sbjct: 654 VDD----AAETNMVFSSLMGARVDVRKELIKSAATRMNLENLD 692 >gi|269794905|ref|YP_003314360.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542] gi|269097090|gb|ACZ21526.1| DNA topoisomerase IV subunit B [Sanguibacter keddieii DSM 10542] Length = 709 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 236/708 (33%), Positives = 348/708 (49%), Gaps = 65/708 (9%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 SA +Y + + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ Sbjct: 1 MTTASAESSYTSRHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I + L + +TV D+GRGIPV+ K + +E++ T LHAGGKF +Y SGGL Sbjct: 61 TRIGIVLHADTSVTVTDDGRGIPVDIESK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKVRN------------ 201 HGVG SVVNALS L V V R + + F RG P L K + Sbjct: 120 HGVGASVVNALSARLDVEVDRASKVHKMTFRRGEPGLFDDPKTGPSPDSAFTPFVSNSEL 179 Query: 202 ---------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--E 250 GTR+ + D ++F A F L+ + +L + ++ E Sbjct: 180 AIVGKAKRGTTGTRVRYWADRQVFPKTAVFAYDELVTRVRQTTFLVPGLTITVRDERGLE 239 Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------K 294 P +E F GG +++ + + ++ TG+ + Sbjct: 240 GTPGADGPHEETFVHHGGTVDFVEFLAPDTPVTATWHLTGEGSFKETVPVLDDRGHMVAQ 299 Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353 + + V+ A+ W E+ ++ N I T +GG+H SG L + ++K E K Sbjct: 300 EVSRDCEVDLALRWGTGYDTEVRTFVNIISTPKGGSHLSGFEAGLLKVMRKAVETNARKL 359 Query: 354 AISII-------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402 +S DD++ +L+V + EP+F GQTK L + + R VE + Sbjct: 360 KVSTKDNAERIEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTAPVRAIVARVVEQQIGA 419 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIA 461 +A L++ V+ RL RKQ+E++R+ A+ LP KLADC + Sbjct: 420 MLTSAKRDEKTQAALLMDKVVAEMRARLSARKQKEISRRKNALETSSLPTKLADCRSDDV 479 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +ELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + N + ++Q LG Sbjct: 480 ARSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDMLRNAECAAIIQVLG 539 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + + E RY KV++MTDADVDGAHI +LLLT F++ M L++ ++ PPL R Sbjct: 540 AGSGRSFDLEAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPLVDSGRVYAAVPPLHR 599 Query: 582 I------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634 + ++ + +Y + E +L++ + GK K +I R+KGLGEM A QL ET MD Sbjct: 600 VEVIGAGSRKNEYIYTYSEAELAAVLKKLDRSGKRYKDDIQRYKGLGEMDADQLAETTMD 659 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL RV ++ + LMG+ R FI AS +D Sbjct: 660 PRHRTLRRVT----AEHAENAERVFELLMGSDVAPRKDFIVAGASDLD 703 >gi|288916706|ref|ZP_06411081.1| DNA gyrase, B subunit [Frankia sp. EUN1f] gi|288351961|gb|EFC86163.1| DNA gyrase, B subunit [Frankia sp. EUN1f] Length = 692 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 249/699 (35%), Positives = 354/699 (50%), Gaps = 67/699 (9%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGL+ VR RPGMYIG T E+ LHHL EV+DNA+DE +AGY + I V+L Sbjct: 3 YDASSIKVLEGLDAVRKRPGMYIGSTGERGLHHLVYEVVDNAVDEALAGYCDTITVTLLA 62 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V DNGRGIPV HP T+E++LTTLHAGGKFD Y +SGGLHGVG+SVVN Sbjct: 63 DGGVRVTDNGRGIPVGEHP-VKKIPTVELLLTTLHAGGKFDGQAYAVSGGLHGVGVSVVN 121 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS L V V + Q + P +PL K + I+F DP IF + Sbjct: 122 ALSTRLDVAVETDGHSWFQPYVASRPAAPLAKTGTSKKTGT-TISFWADPTIFETTT-YK 179 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK----------------------- 260 L + Q A+L+ + ++ A K Sbjct: 180 YETLYRRLQEMAFLNKGLSITLRDERSAAAKNPALAAKAAEAAEAAAAAGEAEAPAAETA 239 Query: 261 --------------------EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 F + GL ++ + + + + +++ G Sbjct: 240 AVEASSAPAAAAEEVTEPVEVTFKYDNGLVDFVGHLNATKDAVHRSVISLESKGTGI--- 296 Query: 301 TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-- 357 E A+ W + ++ NTI T EGGTHE G R ALT + YA+ + + Sbjct: 297 EAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQNLLKPVKAGS 356 Query: 358 -------ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 DD+ I+SV + +P+F GQTKTKL + +A++ V+ + Sbjct: 357 KNTDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKFVQEMCYAALKDWFEV 416 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 N EA ++ ++ R+ R+ R+ RK + LPGKL+DC EL+IV Sbjct: 417 NRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLSDCQYTDPERCELYIV 476 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSAGGSAK R+ QA+LPLRGKILNV A +++ N ++ L+QALG + Sbjct: 477 EGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQALGTGIHDDFD 536 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589 LRY K+++M DADVDG HI +LLLT ++ M L+E H+FL PPL++I G + Sbjct: 537 IAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVFLAQPPLYKIKWGREDW 596 Query: 590 -YAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 YA+ + + +LE + G+ K I RFKGLGEM A++L +T MD ++R LL+V ++ Sbjct: 597 EYAYSDRERDGLLERGTEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLD 656 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG D R FIQ A + + Sbjct: 657 D----AAVADELFSVLMGEDVDARRSFIQRNAKDVRFLD 691 >gi|317049581|ref|YP_004117229.1| DNA topoisomerase IV subunit B [Pantoea sp. At-9b] gi|316951198|gb|ADU70673.1| DNA topoisomerase IV, B subunit [Pantoea sp. At-9b] Length = 631 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 367/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 SQSSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F G + L V + GT + F PD + F D Sbjct: 118 SVVNALSKRVEVTVRRNGEVYDIAFENGEKVQDLHVTGTVAKRNTGTSVHFWPD-ESFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYQDGLTDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLPTLPEKPFVGSFAGEVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVQNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ ++ D ++ T ++ L+ K +++R ++QE+ D Sbjct: 583 NTRRLVQLTVSDD--DVEQTLRVMDMLLAKKRSEDRRNWLQEKGDLAD 628 >gi|311278050|ref|YP_003940281.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1] gi|308747245|gb|ADO46997.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1] Length = 631 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 364/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V V R I+S F G + L V + GT + F PD + F D Sbjct: 120 VNALSKRVEVNVRRDGQIYSIAFENGEKVEELHVTGTVGKRNTGTSVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFKDRVNDSE-------QTWCYADGLNDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGSFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + ++++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRAVVKEGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 585 RRLVQLTISD--EDEQQTDAVMDMLLAKKRSEDRRNWLQEKGDMAD 628 >gi|238750922|ref|ZP_04612419.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380] gi|238710836|gb|EEQ03057.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380] Length = 631 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N +Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKSYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GWVTLPEDPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|288940508|ref|YP_003442748.1| DNA topoisomerase IV subunit B [Allochromatium vinosum DSM 180] gi|288895880|gb|ADC61716.1| DNA topoisomerase IV, B subunit [Allochromatium vinosum DSM 180] Length = 634 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 359/646 (55%), Gaps = 25/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS+I +L+GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I V+L Sbjct: 5 YDASAIEVLQGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKRISVTLHA 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G L V D+GRG+PV+ HP+ + +E+ILT LHAGGKF++ Y SGGLHGVG+SVVN Sbjct: 62 DGSLEVEDDGRGMPVDIHPQ-EGRPGVEVILTKLHAGGKFNSDNYRFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGF 222 ALS L V V R ++ F G +S L+ V+ N RGTR+ F PDP F F Sbjct: 121 ALSRHLEVWVKRGGQEYNMAFKDGNKVSDLDVVGTVKRNDRGTRLRFWPDPGYFDSP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + Q+KA L ++ + + E + + + GL+ YL L Sbjct: 180 AVRPLTHLLQAKAVLCPGLEVRFRDETSGEE-------QVWCYQDGLQDYLLQSLSGVET 232 Query: 283 ISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEI---TSYCNTILTDEGGTHESGLRVAL 338 + SE F G E + + W SY N I T +GGTH +GLR L Sbjct: 233 LPSEPFVGDMEGRTEAASWALVWLPEPIRAGGGEPIAESYVNLIPTVQGGTHVNGLRTGL 292 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ E R + + +D+ ILSV + +P+F+GQTK +L S + V Sbjct: 293 TEAVREFCEFRNLLPRGVKLAPEDVWNRVSYILSVKLLDPQFSGQTKERLSSRECAAFVS 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L Q+ E ++ E I ++ RLR R V RK + LPGKLADC+ Sbjct: 353 GVVKDSFSLWLNQHVAEGERIAELAIGAAQARLR--AGRTVTRKKITQGPALPGKLADCT 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN E++ +Q++ D+ Sbjct: 411 ATDPERGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVAPEEVLASQEVHDIA 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LR+ K+ I+ DAD DGAHIA+LL F + L+ + H+++ P Sbjct: 471 VAIGVDPGSDDL-SRLRFGKICILADADSDGAHIATLLCALFLKHFRRLVAEGHVYVAMP 529 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA D++ K+ IL+ KGK+ + RFKGLGEM +QL+ET + + Sbjct: 530 PLYRIDVGKQVYYALDDDEKKGILDRIAAEKIKGKVNVQRFKGLGEMNPAQLRETTIHPD 589 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+ D + + L +A +R ++QE+ + Sbjct: 590 TRRLVQLTIDDDRETDELLDRL---LAKKRAADRRAWLQEKGDLAE 632 >gi|261819682|ref|YP_003257788.1| DNA topoisomerase IV subunit B [Pectobacterium wasabiae WPP163] gi|261603695|gb|ACX86181.1| DNA topoisomerase IV, B subunit [Pectobacterium wasabiae WPP163] Length = 631 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 363/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F G + L R GTR+ F PD + F D Sbjct: 118 SVVNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-ETFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIVFKDKVNNTE-------QRWCYQDGLNDYLCEAIN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G + V+WA+ W E + SY N I T GGTH +GLR Sbjct: 230 GLITLPEKPFLGSITGETE---AVDWALLWLPEGGDLLTESYVNLIPTPMGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV ++EP+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSTDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPPQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ IN ++ T ++ L+ K +++R ++QE+ ++ Sbjct: 583 NTRRLVQLTIND--EEMEQTMAMMDMLLAKKRSEDRRNWLQEKGDKVE 628 >gi|289827109|ref|ZP_06545898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 631 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 241/650 (37%), Positives = 360/650 (55%), Gaps = 26/650 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ESFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ + ++KA L V+ + + +E + + + GL YL + Sbjct: 177 PRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSE-------QRWCYQDGLNDYLGEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++ K + R G Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLR-ADKKSGTTKNSPAVRRCRGNWRTV 405 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + I TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 406 PRRILIVTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 465 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 466 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVAL 524 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 525 PPLYRIDLGKEVYYALTEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 584 TRRLVQLTISD--EDDQRTNAMMDMLLAKKRSEDRRNWLQEKGDLAD-LD 630 >gi|253991001|ref|YP_003042357.1| DNA topoisomerase IV subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782451|emb|CAQ85615.1| topoisomerase IV subunit B [Photorhabdus asymbiotica] Length = 631 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 369/646 (57%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+IL+ LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HSDQSLEVIDDGRGMPVDIHPE-EGVSAVELILSRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + ++ F G + L + GT + F PD + F D Sbjct: 120 VNALSKRIEVTVRRSSQVYQIAFENGDKVQELAVIGSCGKRNTGTSVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A+RL + ++KA L V+ + E +++ + GL YL + Sbjct: 179 RFSASRLTHLLKAKAVLCPGVEIVFKDKINDTE-------QKWCYADGLTDYLMAAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G + V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 MTLPEAPFVGAFSGETE---AVDWALLWLPEGGELLAESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN EA +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSNDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKNGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +L+ + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKSAVLDRLSRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++T ++ L+ K +++R ++QE+ ++ Sbjct: 585 RRLVQLTIDD--ENYQETFSMMDMLLAKKRSEDRRNWLQEKGDTVE 628 >gi|94500377|ref|ZP_01306909.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65] gi|94427412|gb|EAT12390.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65] Length = 631 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 355/647 (54%), Gaps = 26/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A SI +L GL+PVR RPGMY T+ +HL EVIDN++DE +AG+ N I + L Sbjct: 2 SNYTAQSIEVLSGLDPVRKRPGMY---TETTRPNHLAQEVIDNSVDEALAGHCNHITIEL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V DNGRG+P + HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVG+SV Sbjct: 59 FADQSLAVTDNGRGMPTDIHPEH-GVSGVELILTKLHAGGKFSNDNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219 VNALS L VT+ R I F G LEK + + GT + F PD K F Sbjct: 118 VNALSKALEVTIHRNGEIMRIAFQDGEKAIDLEKIGETKRKKDTGTTVRFLPDAKYFDSH 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL + ++KA L + + + E++++ GL YL + Sbjct: 178 -KFSVPRLKHVLRAKAVLCPGLTIEFINHGNKDDN------EKWFYEDGLIDYLTESTKG 230 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + E F G V+WA+ W E E + SY N I T +GGTH +GLR Sbjct: 231 YETLPQEPFEGSMSGNTE---AVDWAVQWLPEGGEQLMESYVNLIPTAQGGTHVNGLRTG 287 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + DD+ +LS + +P+F+GQTK +L S +A V Sbjct: 288 LLEALREFCEFRNLLPRGVKLTPDDVWDKVAFVLSAKLADPQFSGQTKERLSSREAAAFV 347 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L ++ ++ E VI ++ R+R ++V RK + LPGKLADC Sbjct: 348 SGVVKDSFSLWLNEHSSLGERIAEMVISNAQRRMR--SAKKVVRKKVTQGPALPGKLADC 405 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + N +ELF+VEGDSAGGSAKQAR+R NQA++PLRGKILN S ++ +Q+I D+ Sbjct: 406 ASNDPAYSELFLVEGDSAGGSAKQARSRDNQAIMPLRGKILNSWEVASTEVLASQEIHDI 465 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S +LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 466 SVALGMDPGSDDL-SNLRYGKICILADADSDGLHIATLLCALFVKHFPALVRAGHVYVAM 524 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G YA DE + +L+ + + KGKI + RFKGLGEM QL+ET MD Sbjct: 525 PPLYRIDVGKDVYYALDEAERAGVLDRIQAEKKKGKINVQRFKGLGEMNPLQLRETTMDP 584 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L+++ I + ++ + L ++ +R +++ + + D Sbjct: 585 DTRRLVQLSIEEGDDTNEMMDLL---LAKKRSADRKTWLESKGNKAD 628 >gi|88859081|ref|ZP_01133722.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2] gi|88819307|gb|EAR29121.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2] Length = 629 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 22/646 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ +Y+A SI +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 SNQDYNAESIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASKIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHEDNSLEVQDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V+V R + F G + L V + GT + F D F Sbjct: 118 SVVNALSTRVEVSVKRDGQQYQIAFENGDKVEDLSITGTVGKRNTGTSVRFWADSSYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + ++L + ++KA L ++ + + +E+++ GLK YL+ ++ Sbjct: 178 PN-YSISKLTYLLKAKAVLCPGLRIRFINK-------QTKDTQEWFYEAGLKDYLKESIK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 GYEALPEEPFTGEF-RGNTEGADWAICWLPEGGEGIYESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + DD+ +LSV +++P+FAGQTK KL S V Sbjct: 289 LEAMREFCEFRNLLPRGVKLTPDDIWDKCNYVLSVKMQDPQFAGQTKEKLSSRSCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L ++ +A L E I ++ R+R ++V RK LPGKL DCS Sbjct: 349 GVVKDSFSLWLNEHTDKAELLAELCINNAQRRMR--AAKKVVRKKITSGPALPGKLTDCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+F VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ Sbjct: 407 TSETSRSEIFFVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG SQ LRY KV I+ DAD DG HIA+LL F + L+E H+F+ P Sbjct: 467 VALGIDPDSQDLTT-LRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEAGHVFVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G YA DE+ K ILE K GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLYRIDLGKDVYYALDEDEKNGILERITAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPN 585 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ N+++ L +A +R +++++ + Sbjct: 586 TRRLVQLTFEDKENTIEMMDML---LAKKRAPDRRQWLEDSGDKAE 628 >gi|289209261|ref|YP_003461327.1| DNA topoisomerase IV subunit beta [Thioalkalivibrio sp. K90mix] gi|288944892|gb|ADC72591.1| DNA topoisomerase IV, B subunit [Thioalkalivibrio sp. K90mix] Length = 628 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 372/646 (57%), Gaps = 28/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS I +LEGL+PVR RPGMY TD +HL EVIDN++DE I+G+A I+V L Sbjct: 2 SYSASDIEVLEGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAISGHAKRIDVILH 58 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D+GRG+PV+ HP+ N+ +E+IL+TLHAGGKF + Y+ SGGLHGVG+SVV Sbjct: 59 KDDSVSVSDDGRGMPVDLHPR-ENRPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSVV 117 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS +L V + R + F+ G LE V + GT + F PDP+ F Sbjct: 118 NALSKQLEVQIKRDGREYRMAFAGGYKTQDLEAVGDVGKRNTGTTLHFWPDPQYFDSA-K 176 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F RL + ++KA L + + + E E+ + GL+ YL L+ Sbjct: 177 FSVPRLKHILRAKAVLCPGLTVTFHDE-------TTGEACEWCYQAGLRDYLVEALDGLE 229 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339 + E F G +WA+ W E E+ SY N I T +GGTH +GLR LT Sbjct: 230 RVPEEPFMGSVSG---ATEAADWAVTWLPEGGEVVSESYVNLIPTTQGGTHVNGLRTGLT 286 Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + R I + +D+ +LS +++P+FAGQTK +L S A V Sbjct: 287 EAVREFCEFRSLLPRGIKLAPEDVWERVASVLSFKMQDPQFAGQTKERLSSRQAAPFVSG 346 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+P + ++ E I+ +++R R R+V RK + LPGKLADC+ Sbjct: 347 VVKDAFSLWLNQHPQQGERIAELAIQNAQKRSR--AGRKVVRKKVTQGPTLPGKLADCAS 404 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN +++ +Q+I D+ Sbjct: 405 QDLERTELFLVEGDSAGGSAKQARDRDFQAIMPLRGKILNSWEVDPDQVLGSQEIHDISV 464 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + LRY KV I+ DAD DGAHIA+LL F + L+E+ H+++ PP Sbjct: 465 ALGVDPGQASL-DGLRYGKVCILADADSDGAHIATLLCALFLKHFRPLVERGHVYIAMPP 523 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+R+ G ++ YA D++ K +LE + KGK+ ++RFKGLGEM QL+ET M+ + Sbjct: 524 LYRVDVGKQTFYALDDDEKAGVLERIEAEKMKGKVSVTRFKGLGEMNPLQLRETTMNPDT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++ + DT ++ L+G K A ER +++ + D Sbjct: 584 RRLVQLTLD----AADDTMQLLDMLLGKKRASERRAWLEGKGHLAD 625 >gi|227112782|ref|ZP_03826438.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 255/648 (39%), Positives = 363/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F G + L R GTR+ F PD + F D Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T GGTH +GLR Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV ++EP+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ IN+D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTINED--DVDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628 >gi|119964148|ref|YP_947523.1| DNA topoisomerase IV subunit B [Arthrobacter aurescens TC1] gi|119951007|gb|ABM09918.1| putative DNA gyrase subunit B [Arthrobacter aurescens TC1] Length = 702 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 241/700 (34%), Positives = 350/700 (50%), Gaps = 61/700 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y+A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE +AG+ + I+ Sbjct: 2 APSSEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALAGFGHDIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + + + D+GRGIPV+ PK S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 VILHADNSVEIHDDGRGIPVDVEPK-TGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE----------------------KK 196 SVVNALS L V V R + + F RG P ++ Sbjct: 121 ASVVNALSSRLDVQVDRGSKTYQMSFRRGEPGRFIDSGAKPGPNATFEPFVENSVLDVVG 180 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 + R GTR+ + D +IF A F L + ++L +K ++++A G Sbjct: 181 KAKRGVTGTRVRYWADRQIFTPDAKFSYDDLAARARQTSFLVPGLKITVRDERKLAGTPG 240 Query: 257 IP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298 +E F+ GG+ +++ + + G + K T Sbjct: 241 EAGVHEEVFHHDGGISEFVEFLAADSGVTDVWRLHGSGKFKETVPVLDENGHSKIAEVER 300 Query: 299 RGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W + S+ N I T +GGTH+SG AL + +K E K Sbjct: 301 DCEVDIALRWGIGYETTMRSFVNIIATPKGGTHQSGFEAALLKTFRKAVETNARKLKAGN 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I DD++ +L+V + EP+F GQTK L + + + VE + Sbjct: 361 DKIEKDDILAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEKEITARLGSANRN 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + ++ LLE ++ + R+ R +E RK A+ +P KLADC + +ELFIV Sbjct: 421 DKAQSALLLEKMVAEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK AR+ QA+LP+RGKILNV A + +N + L+Q +G + + Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 E RY KVI+MTDADVDGAHI +LLLT F++ M ++E +F PPL R+ Sbjct: 541 IEAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVFAAVPPLHRVEVINPGQ 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E +L K GK K I R+KGLGEM A QL ET MD RTL + Sbjct: 601 KANEMIYTYSEAELHVLLSNLAKEGKRYKEPIQRYKGLGEMDAQQLAETTMDPRHRTLRK 660 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V I S + ++ + LMG+ R +FI A+ +D Sbjct: 661 VGIE----SAQRAEEVFDLLMGSDVAPRKEFIIAGAATLD 696 >gi|332035446|gb|EGI71944.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505] Length = 629 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 239/641 (37%), Positives = 348/641 (54%), Gaps = 22/641 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 QNYNAEAIEVLNGLDPVKRRPGMY---TDTVRPNHLGQEVIDNSVDEAMAGHATRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V D+GRG+P++ HP+ +E+I T LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + F G + L V + GT + F D F Sbjct: 120 VNALSTRVEVTVRRDAQQYRMAFENGDKVEDLSVIGTVGKRNTGTTVRFWADVSYFDSPN 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + +L + ++KA L ++ + E +E+++ GLK YL ++ Sbjct: 180 -YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETKEWFYETGLKDYLIEAVKGF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + + F G+ K SY N I T +GGTH +GLR L Sbjct: 232 ETLPQDPFVGEF-KSSIEGADWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLE 290 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 ++++ E R + + DD+ +LSV +++P+FAGQTK KL S V Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L ++ A L E I ++ RLR ++V RK LPGKL DCS Sbjct: 351 VKDSFSLWLNEHTDTAELLAELCISNAQSRLR--AAKKVVRKRVTAGPALPGKLTDCSAA 408 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ A Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG S LRY K+ I+ DAD DG HIA+LL F + +L++ H+++ PPL Sbjct: 469 LGIDPESTDM-SGLRYNKICILADADSDGLHIATLLCALFVRHFPELVKTGHVYVAMPPL 527 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638 FRI G + YA DEE K IL + K GK+ + RFKGLGEM QL+ET MD N R Sbjct: 528 FRIDIGKEVYYALDEEEKTAILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L+++ +++++ +++ L ++ +R +++++ + Sbjct: 588 RLVQLTLDEEVETMEMMDML---LAKKRSPDRRQWLEDHGN 625 >gi|157372496|ref|YP_001480485.1| DNA topoisomerase IV subunit B [Serratia proteamaculans 568] gi|157324260|gb|ABV43357.1| DNA topoisomerase IV, B subunit [Serratia proteamaculans 568] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V V R ++S F G + L + GT I F PD + F D Sbjct: 120 VNALSTRVEVNVKRDGNVYSIAFENGDKVQDLAVTGSCGKRNTGTSIHFWPD-EKFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIYFIDKLNNTE-------QRWCYQDGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ITLPEAAFVGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNIQAAEQLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLNMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRSLVKGGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVFYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++ + T ++ L+ K +++R ++Q++ + Sbjct: 585 RRLVQLTVSD--EDVDQTLAMMDMLLAKKRSEDRRNWLQDKGDMAE 628 >gi|227326913|ref|ZP_03830937.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F G + L R GTR+ F PD + F D Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SPRFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T GGTH +GLR Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV ++EP+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I++ + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTISE--EDMDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628 >gi|331006356|ref|ZP_08329667.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989] gi|330419838|gb|EGG94193.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989] Length = 628 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 253/645 (39%), Positives = 362/645 (56%), Gaps = 26/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY + I +L GL+PV+ RPGMY T+ +HL EVIDN++DE +AG+A IEV+L Sbjct: 3 NYSSEDIEVLTGLDPVKKRPGMY---TETTRPNHLAQEVIDNSVDEALAGHAKTIEVTLH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +TV D+GRG+PV+ HP K +E+IL+TLHAGGKF + YE SGGLHGVG+SVV Sbjct: 60 KNQAITVSDDGRGMPVDMHP-VQKKPGVEVILSTLHAGGKFSDKNYEFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS +L V++ R + +FS G + L + + GT + F P P+ F Sbjct: 119 NALSQKLVVSIKRDGKVHDIEFSHGDKVKDLHVTGECGKRNTGTTVYFLPAPEYFDSP-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L +K ++ + E EE+Y+ GL YL Sbjct: 178 FSVSRLRHVLRAKAVLCPGLKIVFTNE-------QTAETEEWYYEDGLTDYLVDATRGWE 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 ++ FTG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 VLPRAPFTGSFSGSTE---AVDWAVQWLPEGGEVIQESYVNLIPTAQGGTHVNGLRTGLL 287 Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +++Y E + R + + DD+ +S +LS + +P+F+GQTK +L S +A V Sbjct: 288 DAMREYCEFRSLLPRGVKLAPDDIWVSCCFVLSSKLSDPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +D F +L Q+ + KL ++ I +++R+R ++V RK + LPGKLADCS Sbjct: 348 VAKDAFSLWLNQHTEDGDKLADFCIHNAQKRVR--SSKKVARKKITQGPALPGKLADCSS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ Sbjct: 406 AEPERGELFLVEGDSAGGSAKQARSREFQAIMPLRGKILNTWEVDSAEILASQEVHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G E LRY KV I+ DAD DG HIA+LL F + L+ H+F+ PP Sbjct: 466 AIGVDPGVDNL-EKLRYHKVCILADADSDGLHIATLLCALFLRHFPALVNNGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE KQ IL+ + KGK+ + RFKGLGEM QL+ET MD + Sbjct: 525 LFRIDVGNDVYYALDESEKQGILDRIVAEKKKGKVNVQRFKGLGEMNPMQLRETTMDPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+ + + + L +A +R +++ + D Sbjct: 585 RRLVQLTIDAEDGAHQMLDML---LAKKRAADRKSWLENSGNLAD 626 >gi|327395271|dbj|BAK12693.1| topoisomerase IV subunit B ParE [Pantoea ananatis AJ13355] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 365/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + +Y+A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 SQSSYNAGDIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVTDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V V R I+S F G + L V + GT + F PD + F D Sbjct: 118 SVVNALSKRVEVNVRRNGEIYSIAFENGEKVQDLTVTGTVAKRNTGTSVHFWPD-EHFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTE-------QRWCYEDGLTDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLPTLPEKPFVGTFAGDIE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSAVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ ++ D ++ T ++ L+ K +++R ++QE+ D Sbjct: 583 NTRRLVQLTVSDD--DIEQTLRVMDMLLAKKRSEDRRNWLQEKGDKAD 628 >gi|197286191|ref|YP_002152063.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320] gi|227357310|ref|ZP_03841667.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906] gi|194683678|emb|CAR44632.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320] gi|227162573|gb|EEI47562.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 363/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNAKDIEVLNGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHATKVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V+DNGRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YADQSIEVIDNGRGMPVDIHPEL-KVSAIELILAHLHAGGKFSNKNYQYSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R+ I+ F G + L + + GT + F PD + D Sbjct: 120 VNALSKRIEVTVRREGKIYQIAFENGDKVEELHQIGTCAKRDTGTSVHFWPD-STYFDIP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + L + ++KA L V ++ +E + + GL YL + Sbjct: 179 RFSSKSLSHVLKAKAVLCPGVNVSFTDK-------VNNTQETWCYADGLTDYLSEAVAEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + E FTGK E VEW++ W E + SY N I T +GGTH +GLR + Sbjct: 232 VRLPEEPFTGKFEGDNE---AVEWSMLWLPEGGDLLTESYVNLIPTVQGGTHVNGLRQGV 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R I + +DD +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFHNLLPRGIKLTADDTWERCAYVLSVKMQDPQFAGQTKERLSSRQTSAFVA 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +A+++ F +L QN L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 SAVKNAFSLWLNQNVQVGELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLRYTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L++Q H+++ P Sbjct: 467 VAIGMDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPALVKQGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K IL+ + KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVSYALDEAEKNAILQRLSRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++T ++ L+ K +++R ++QE+ +D Sbjct: 585 RRLVQLVIDD--ENYQETLGMMDMLLAKKRSEDRRNWLQEKGDEVD 628 >gi|206578624|ref|YP_002236552.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342] gi|288933535|ref|YP_003437594.1| DNA topoisomerase IV subunit beta [Klebsiella variicola At-22] gi|290511406|ref|ZP_06550775.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55] gi|206567682|gb|ACI09458.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342] gi|288888264|gb|ADC56582.1| DNA topoisomerase IV, B subunit [Klebsiella variicola At-22] gi|289776399|gb|EFD84398.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55] Length = 631 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 251/646 (38%), Positives = 364/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++S F G + L + GT + F PD + F D Sbjct: 120 VNALSKRVEVTVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFRDQVNDSE-------QRWCYADGLNDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G + V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGTFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALTEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 585 RRLVQLVISD--EDEQQTTAMMDMLLAKKRSEDRRNWLQEKGDMAD 628 >gi|261342468|ref|ZP_05970326.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC 35316] gi|288315107|gb|EFC54045.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC 35316] Length = 630 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 359/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD F Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDGSFFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 178 R-FSVSRLTHLLKAKAVLCPGVEITFKDNVNNTE-------QTWCYADGLNDYLCEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T GGTH +GLR Sbjct: 230 LPTLPEKPFVGNFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMLGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFTLWLNQNVQAAEMLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+ + Sbjct: 465 SVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRTLVKNGHVHVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +L++ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLDQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLTISD--EDEQQTNAMMDMLLAKKRSEDRRNWLQEKGDMAD 627 >gi|188532591|ref|YP_001906388.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99] gi|188027633|emb|CAO95483.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99] Length = 631 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 251/646 (38%), Positives = 360/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L V + GTR+ F PD + F D Sbjct: 120 VNALSKRVEVTVRRNAEVYEMAFENGDKVQELTVTGTVAKRNTGTRVQFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDKLNKTE-------QSWCYADGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGTFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEAEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I + T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTIGD--EDVDQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628 >gi|115499623|dbj|BAF33486.1| topoisomerase IV subunit B [Listonella anguillarum] Length = 627 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 247/645 (38%), Positives = 353/645 (54%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE + GYA+ ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALRGYASKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+I LHAGGKF N +Y+ SGGLHGVGIS Sbjct: 59 LHEDQSLEVIDDGRGMPVDIHPE-EKISGVELIFCKLHAGGKFSNKSYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R I+ F G + L R +GT + F PD F Sbjct: 118 VVNALSKRVEVTVRRDGQIYEMAFEHGNKVEELTVTGTCGRRNKGTSVHFWPDTSYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ +S E +Y+ GLK YL ++ Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNNLE-------HRWYYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + SY N I T +GGTH + LR L Sbjct: 230 YTLLPEEPFTGEFVAETEA-ANWAVIWLPEGGEMITESYVNLIPTAQGGTHVNRLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCSYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A L E I + R+R ++V RK LPGKL DCS Sbjct: 349 VIKDSFSLWLNEKPQLAELLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLTDCSV 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+F VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 407 QDLSRTEIFFVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG + + LRY K+ I+ DAD DG HIA+LL F + L++ H+F+ PP Sbjct: 467 ALGIDPDNDDL-DGLRYGKICILADADSDGLHIATLLCALFTKHFRALVKAGHIFVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K+ ILE + K KI + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDAEKEGILERLSQK-KAKINVQRFKGLGEMNPLQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ + T + ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AEATDEMMDMLLGKKRADDRRAWLQRYGDMAE 625 >gi|304396845|ref|ZP_07378725.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB] gi|304355641|gb|EFM20008.1| DNA topoisomerase IV, B subunit [Pantoea sp. aB] Length = 631 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 365/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + NY+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE + G+A +EV Sbjct: 2 SQSNYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALGGHAKRVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R I+ F G + L V + GTR+ F PD + F D Sbjct: 118 SVVNALSKRVEVTVRRNGEIYDMAFENGDKVQDLTVTGTVAKRNTGTRVHFWPD-ESFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SPRFSVSRLSHLLKAKAVLCPGVEIVFKDKLNNTE-------QTWCYEDGLTDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLPTLPEKPFVGSFAGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNIQTAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTAQDLNKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRSLVSNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEDEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I++ + T ++ L+ K +++R ++QE+ D Sbjct: 583 NTRRLVQLTISE--EDVDQTIRMMDMLLAKKRSEDRRNWLQEKGDTAD 628 >gi|261493164|ref|ZP_05989695.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311167|gb|EEY12339.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 635 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 255/650 (39%), Positives = 368/650 (56%), Gaps = 26/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+A+ I+V Sbjct: 2 SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L VVDNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGI Sbjct: 59 ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS+ + + + R ++S F+ G+ + L + + GT + F P+PK F Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + E E +Y+ GL YL L Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G + V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L + ++ E+ + + + +DD+ +LS+ I+EP+FAGQTK +L S A Sbjct: 287 GLLKATVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V++ L+D F +L QN + E I ++ R+R ++V RK + LPGKLAD Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S E+LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582 Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+++ + + +T + ++ L+G K A++R +++Q R D Sbjct: 583 PSTRRLVQLTFDDTAEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632 >gi|238793656|ref|ZP_04637279.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909] gi|238727071|gb|EEQ18602.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909] Length = 631 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 248/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVTDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNIQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTLAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|24375387|ref|NP_719430.1| DNA topoisomerase IV subunit B [Shewanella oneidensis MR-1] gi|24350217|gb|AAN56874.1|AE015822_6 DNA topoisomerase IV, B subunit [Shewanella oneidensis MR-1] Length = 628 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 246/645 (38%), Positives = 357/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L+ R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDTSYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+Y+ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E F G K SY N I T GGTH +G R L Sbjct: 230 NIMLPEEPFIGSF-KGQIEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ A ILSV +++P+FAGQTK KL S + V Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +RD F +L N A L E I +++RL+ K +V RK LPGKL DCS Sbjct: 349 IVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA D+ K+ +L+ ++ KGK++++RFKGLGEM QL+ET MD N Sbjct: 526 LFRIDIGKDVYYALDDAEKEGVLDRINAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 R L+++ I+ ++T ++ L+ K + +R +++++ Sbjct: 586 RRLVQLTIDD----AEETDSLMDMLLAKKRSPDRKNWLEDKGDMA 626 >gi|238789175|ref|ZP_04632963.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641] gi|238722707|gb|EEQ14359.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641] Length = 631 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 248/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|240047651|ref|YP_002961039.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae HRC/581] gi|239985223|emb|CAT05236.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae] Length = 645 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 241/646 (37%), Positives = 357/646 (55%), Gaps = 30/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A +++L+GLE VR RPGMYIG TD LHHL E+ DNA+DE IAG+A I++ L Sbjct: 2 EYSAEKLKVLKGLEAVRKRPGMYIGSTDIGGLHHLIWEIFDNAVDEAIAGFATEIKLILK 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIPV+ H K+ +E++ + LHAGGKF N Y+ + GLHGVG SVV Sbjct: 62 KDNSIEISDNGRGIPVDKHK--SGKTGVELVFSELHAGGKFSNDVYKTAAGLHGVGSSVV 119 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L V V R + F G L +K + RGT + F PD IF + F Sbjct: 120 NALSSKLEVWVYRDGYSYFTSFKNGGHLDVSTQKVEKSKNRGTTVRFWPDFSIF-SQTSF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + + + ++L +K + + E E F+F GL ++++ +SL Sbjct: 179 SSDIISERLRETSFLVSNLKISFYNEISN-------ENEIFFFQKGLISFVEFINVGKSL 231 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341 + ++ + E +G +E A+ + + I S+ N + TD+GGTHE+G R AL R Sbjct: 232 VHKDVVFLEGESQGIQ---LEVALQYVSSYQDTIISFVNNVKTDQGGTHENGFRGALLRA 288 Query: 342 IKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I Y + K ++ D+ ILS+ + EP EF GQTK KL +L A+ E Sbjct: 289 ITTYGQQKSLLKAKTNLEFSDVKQGLSAILSLRVPEPILEFVGQTKNKLSTLIAKSVTEE 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKLAD 455 + + Y VQN +A K++ V +ER+ + + + ++ + K L GKL Sbjct: 349 IIYNSLMTYFVQNKEDAAKIITHVNNSYQERISAKLAKIENKTSKNISKEKRILSGKLTP 408 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 A E+F+VEG+SAGGSAK RNR NQA+LPL+GKI+N + N++I+ Sbjct: 409 AQSKNAKEREIFLVEGESAGGSAKLGRNRFNQAILPLKGKIVNAEKTKLIDLLKNEEIIA 468 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 +V ALG + ++L Y+K+IIMTDAD DGAHI L+LTF ++ M LIE H+++ Sbjct: 469 IVSALGTGLGVNFNLKNLNYDKIIIMTDADTDGAHIQILILTFIFRYMKPLIENGHVYIA 528 Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL++++ + YA DE+ K+L + K +I R+KGLGEM A+QL ET MD Sbjct: 529 QPPLYKLSYKNKDVRYAWDEKELAKLLAK-----KPNAQIQRYKGLGEMNAAQLWETTMD 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 R+L++V IN + + I LMG K D R +I++ F Sbjct: 584 PKTRSLVKVSIND----IAIVERRIFTLMGDKTDIRKTWIEKNVDF 625 >gi|228982416|ref|ZP_04142675.1| DNA topoisomerase [Bacillus thuringiensis Bt407] gi|228776599|gb|EEM24907.1| DNA topoisomerase [Bacillus thuringiensis Bt407] Length = 644 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 231/663 (34%), Positives = 354/663 (53%), Gaps = 39/663 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y+ SI ILEGLE VR RPGMYIG T+ K LHH+ E+ DN++DE +AGY + I Sbjct: 2 SEEYNGDSIEILEGLEAVRKRPGMYIGSTNTKGLHHMIKEITDNSVDEAVAGYCDEIITR 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ DNGRG+PV+ H K ST +I T LHAGGKF + Y++SGGLHGVG S Sbjct: 62 IHKDNSISIEDNGRGVPVDVHRKA-GYSTARVIYTILHAGGKFGGNGYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEK-----VRNKRGTRITFRPDPK 214 VVNALS L V + R I+ ++ G+P+ PL + + ++RGT++ F PD Sbjct: 121 VVNALSSYLEVEIHRNGKIYKDRYENGGVPVIPLTENGELPSIGDTDRRGTKVRFLPDNT 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 I ++ + K Q A+L+ +K + ++ EK F G+ ++ Sbjct: 181 ILET-TEWNIETIEKRLQESAFLNKGLKFVFIDERTGYEKT-------FCEKDGIGGLVK 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESG 333 ++ ++ I K V+ A + +E E YCN I+T GGTH G Sbjct: 233 EINHSKPTLTDVISFSGVSKD----IEVQIAFQYVQEYNEHLISYCNNIITPHGGTHIVG 288 Query: 334 LRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 L+ +TR I YA+ + + V ++S+ P++ GQTK KL S D Sbjct: 289 LKSGITRLINGYAKELGLLKTKDNTIDGAHIRTGIVAVVSIRHSNPQYEGQTKEKLGSTD 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A+ VE +++ + + E +++E + S+ R K R+ + + +L+ G Sbjct: 349 AKGAVEEVIKNEGSKFFDLHVEEVKRIIENAMRVSKIRETEEKSRDNSLQKKDAQLQTNG 408 Query: 452 KLA-DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 KLA S+ E+++VEGDSAGG+AKQAR+R QA+LP +GKI+NV A +K+ +N Sbjct: 409 KLASASSKTPVKKKEIYLVEGDSAGGTAKQARDRKTQAILPAKGKIINVEKARIDKVLSN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++I ++ A+G + + Y +V+IMTDADVDGAHI +LLLTFFY+ M LIE+ Sbjct: 469 EEIQSIIVAIGGGHGKAFDISKVNYGRVVIMTDADVDGAHIRTLLLTFFYRYMRPLIEEG 528 Query: 571 HLFLISPPLFRI----TQGTKSV----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 ++++ PPL++I +G K V YA+ +E + K I R+KGLGE Sbjct: 529 YVWIAVPPLYQIVHEEQKGRKKVETSMYAYSDEELVSVKNLLGNKIKR---IQRYKGLGE 585 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M A+QL +T ++ R ++V I K+ LMG K R +FI A Sbjct: 586 MSATQLWDTTLNPETRKQIQVRIED----AKEADAVTELLMGDKVAPRREFIISEAHKA- 640 Query: 683 DVG 685 ++ Sbjct: 641 NID 643 >gi|315127627|ref|YP_004069630.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913] gi|315016141|gb|ADT69479.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913] Length = 629 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 241/641 (37%), Positives = 346/641 (53%), Gaps = 22/641 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A +I +L GLEPV+ RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 QNYNAEAIEVLNGLEPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEAMAGHATRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V D+GRG+P++ HP+ +E+I T LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R F F G + L V + GT + F PD F Sbjct: 120 VNALSTRVEVTVRRDAQQFRMAFEHGDKVEDLNVIGSVGKRNTGTTVRFWPDTSYFDSAN 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +L + ++KA L ++ + E +E+++ GLK YL ++ Sbjct: 180 -FSLTKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLVEAVKGY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 ++ + F G+ SY N I T +GGTH +GLR L Sbjct: 232 EILPKDPFVGEFSS-SIEGADWAVVWMPEGGESTAESYVNLIPTAQGGTHVNGLRQGLLE 290 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 ++++ E R + + DD+ +LSV +++P+FAGQTK KL S V Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVSGV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L ++ A L E I ++ RLR ++V RK LPGKL DCS Sbjct: 351 VKDAFSLWLNEHTDTAELLSELCISNAQRRLR--AAKKVVRKRVTSGPALPGKLTDCSAA 408 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ A Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ PPL Sbjct: 469 LGIDPDSSDL-SGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPL 527 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638 FRI G YA DE+ K IL + K GK+ + RFKGLGEM QL+ET MD N R Sbjct: 528 FRIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L+++ ++++ +++ L ++ +R +++++ + Sbjct: 588 RLVQLTLDEEEQTMEMMDML---LAKKRSSDRRQWLEDHGN 625 >gi|325106678|ref|YP_004267746.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305] gi|324966946|gb|ADY57724.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305] Length = 639 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 265/653 (40%), Positives = 375/653 (57%), Gaps = 20/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ Y AS I +LEGLE VR RP MYIGG D + LHHL EV+DN++DE +AG+A+ Sbjct: 2 ATASPTKYSASDIEVLEGLEAVRRRPSMYIGGVDVRGLHHLLWEVVDNSVDEFLAGHADT 61 Query: 97 IEVSLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+++L +G LTV DNGRGIPV+ HPKF KS LE+ILTTLHAGGKF + Y SGGLH Sbjct: 62 IKITLHKDGSSLTVADNGRGIPVDKHPKF-KKSALEVILTTLHAGGKFSDKNYARSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG SVVNALS+E+ TV R + Q++ RG +P++K + + GT I FRPD +I Sbjct: 121 GVGSSVVNALSEEMVATVHRDGHEWMQRYKRGKATTPVKKVKPFKGH-GTVIFFRPDEEI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F + + + + Y+ +K ++ + E E + P G+K Y++ Sbjct: 180 FRKTT-FSSDTIRQHLEDICYIHAGLKIRYTDE-------VKNETFELHQPDGIKAYVEK 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 + EK T + I SY N I T GGTH +G+R Sbjct: 232 LTRDEKKKPVHETIFTAEKDDGDIKTEFVLRWTEATDEHIRSYVNGIRTHAGGTHLNGIR 291 Query: 336 VALTRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 + + +K Y ++ K + ++I +DD+ +G++SVF+ +P F GQTK KL + + Sbjct: 292 SGIAKAVKNYMDVHDIKPKGVTISADDIREGCLGVVSVFLGDPMFQGQTKEKLNNPEVTA 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ--REVNRKTAIRKLRLPGK 452 VE +R + +L N A +L +I + R R + ++ LPGK Sbjct: 352 AVEGLIRPGLETWLNNNSSIADAILGRIILAARARQASRDAVASIKRKTPGGKRTNLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC N TELFIVEGDSAGG+A R+ QA+LPLRGK+LN S K NQ+ Sbjct: 412 LLDCRSNNPDETELFIVEGDSAGGTAASGRDSRIQAILPLRGKVLNTESIKINKAMANQE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + DLV+ LG + LRY ++I++ DAD DG HI++LLLTFF++ M DLI + L Sbjct: 472 LSDLVETLGTGIGPSFDAHKLRYGRIILLMDADADGYHISTLLLTFFFRHMPDLIRSEKL 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 F+ PPL+RIT G +S YA D+ HK++IL + K+EISRFKGLGEM ASQL+ET Sbjct: 532 FIGQPPLYRITYGNQSQYALDDLHKEEILASIPAN--RKVEISRFKGLGEMNASQLRETT 589 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +D +R LL+VEI + D + ++L+G A ER++ I ++ DD+ Sbjct: 590 LDPTQRVLLKVEIENQV----DADQTFHQLLGKDARERYRIIMSESALADDLD 638 >gi|259907122|ref|YP_002647478.1| DNA topoisomerase IV subunit B [Erwinia pyrifoliae Ep1/96] gi|224962744|emb|CAX54199.1| DNA topoisomerase 4 subunit (topoisomerase IV subunit B) [Erwinia pyrifoliae Ep1/96] gi|283476925|emb|CAY72799.1| DNA topoisomerase IV, B subunit [Erwinia pyrifoliae DSM 12163] gi|310766325|gb|ADP11275.1| DNA topoisomerase IV subunit B [Erwinia sp. Ejp617] Length = 631 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 253/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L V + GTR+ F PD + F D Sbjct: 120 VNALSKRVEVTVRRNGEVYEMAFENGDKVQDLTVTGTVGKRNTGTRVQFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVTRLSHLLKAKAVLCPGVEIVFKDRLNKTE-------QSWCYADGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGAFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTISD--EDVDQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628 >gi|254491811|ref|ZP_05104990.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxidans DMS010] gi|224463289|gb|EEF79559.1| DNA topoisomerase IV, B subunit [Methylophaga thiooxydans DMS010] Length = 633 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 234/645 (36%), Positives = 347/645 (53%), Gaps = 20/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ YDAS+I +L GLEPVR RPGMY TD +HL EVIDN++DE IAG+A ++V Sbjct: 2 TNTYDASAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHARQLQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+S Sbjct: 59 LHPDNSLEVSDDGRGMPVDMHPE-EGVPGVEVILTRLHAGGKFSNKNYRFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V + R T + F +G L + V + GT + F P+ F Sbjct: 118 VVNALSSRLDVKIRRNATEYQIAFEQGALKESLTEIGTVGKRNTGTTVRFWPEASFFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L + ++ ++ + + GLK+YL + + Sbjct: 178 -KFLVSRLRHVLRAKAVLCPGLIVTFTDL-----SGKEKVEDRWCYEDGLKSYLAVAMTD 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + F G + SY N I T +GGTH +GLR + Sbjct: 232 EPCVPATPFVGHV-GDDSEEADWALMWQLEPGEVLAESYVNLIPTAQGGTHVNGLRSGVL 290 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV + +P+F+GQTK +L S V Sbjct: 291 EALREFCEFRNLLPRGVKLAPEDVWERCCYVLSVKLEDPQFSGQTKERLSSRQCAGFVSG 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + + K+ + I ++ RL+ + ++V RK LPGKLADC+ Sbjct: 351 VVKDSFSLWLNHHVEDGEKIADLAINNAQSRLK--QAKKVVRKRVQSGPALPGKLADCTS 408 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQ R+R QA++PLRGKILN ++ +Q++ D+ Sbjct: 409 QDPARTELFLVEGDSAGGSAKQGRSREFQAIMPLRGKILNTWEVEPTQVLASQEVHDIAV 468 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S LRY K+ I+ DAD DGAHIA+LL F + L+E H+ + PP Sbjct: 469 AIGVDPGSDDL-AGLRYGKICILADADSDGAHIATLLCALFVRHFRPLVEAGHICVAMPP 527 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA D+E +Q IL+ +K KGK+ RFKGLGEM QL+ET M + Sbjct: 528 LYRIDVGKQIFYALDDEERQIILDRIEKEKIKGKVSTQRFKGLGEMNPMQLRETTMAPDT 587 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+R+ I+ + +++ L +A +R ++++ D Sbjct: 588 RRLIRLTISAEDDTMMTLDKL---LAKKRASDRKSWLEQHGDLAD 629 >gi|90415523|ref|ZP_01223457.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium HTCC2207] gi|90332846|gb|EAS48016.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium HTCC2207] Length = 630 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 365/645 (56%), Gaps = 26/645 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V+L Sbjct: 2 STYNAEDIEVLTGLDPVRKRPGMY---TDTARPNHLAQEVIDNSVDEALAGHASRIDVTL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+PV+ HP+ +E+IL+TLH+GGKF N Y+ SGGLHGVG+SV Sbjct: 59 HKDGSLSVCDDGRGMPVDIHPEQ-GIPGVEVILSTLHSGGKFSNKNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALSD+L +TV R + F+ G S L+ + + GT + F P+ I+ D Sbjct: 118 VNALSDKLELTVKRGGNVHQITFANGDKTSDLQVIDSCGQRNTGTILRFWPN-SIYFDSV 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL + ++KA L + + + E EE+++ GL+ YL L+ Sbjct: 177 KFSLLRLRHVLRAKAVLCSGLTVSFYDE-------NTDESEEWHYQDGLQDYLSGSLQGW 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 ++ + F G + +WA+ W + + SY N I T +GGTH +GLR L Sbjct: 230 DILPATPFIGTY---ASANEAADWAVQWMPDGGDLVQESYVNLIPTPQGGTHVNGLRTGL 286 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + DD+ +LS + +P+F+GQTK +L S A V Sbjct: 287 LDAMREFCEFRNLLPRGVKLTPDDIWDRCSFVLSSKLEDPQFSGQTKDRLSSRQAAAFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L Q+ EA KL E I ++ R+R ++V RK + LPGKLADCS Sbjct: 347 GVVKDSFSLWLNQHTEEAEKLAELCIFSAQSRMR--ASKKVVRKKITQGPALPGKLADCS 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 E+F VEGDSAGGSAKQARNR NQA++PLRGKILN S++I +Q++ D+ Sbjct: 405 SAEPERCEIFFVEGDSAGGSAKQARNRENQAIMPLRGKILNTWEVDSQEILGSQEVHDIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + E LRY KV I+ DAD DG HIA+L+ F + L+ H+++ P Sbjct: 465 VALGIDPGLENL-EKLRYHKVCILADADSDGLHIATLICALFVRHFRPLVTAGHVYVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PLFRI G + YA DE K+ IL+ + K GK+ + RFKGLGEM QL+ET M+ + Sbjct: 524 PLFRIDVGKEVFYALDESEKEGILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMNPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ ++ D N+ L +A +R +++ + + Sbjct: 584 TRRLVQLTVDTDDNTDSTMDML---LAKKRAPDRRSWLESKGNLA 625 >gi|330723480|gb|AEC45850.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis MCLD] Length = 649 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 238/652 (36%), Positives = 363/652 (55%), Gaps = 32/652 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y ++++L+GL+ VR RPGMYIG TD + LHHL E++ NA+DE +AG+A I VSL Sbjct: 2 SSYTVENLKVLKGLDAVRKRPGMYIGSTDFEGLHHLVWEIVSNAVDEALAGFAKNIYVSL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + NG + V D+GRGIP+E H S +E++ T LHAGGKF + Y+ SGGLHGVG SV Sbjct: 62 EENGSIVVEDDGRGIPIEKH--TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L V V + N + KF G + NK+GTR+ F PD KIF + Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIF-AQNK 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L +K E +KE F+F G+K +++ + ++ Sbjct: 179 FSFDMISERLRETCFLISELKITL-------EDQITFQKEAFFFKNGIKDFVEFINQGKT 231 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTR 340 L++ + ++ VE A + + + I S+ N I T GGTHE GL+ AL R Sbjct: 232 LLNKQAALINETQEKI---NVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVR 288 Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTV 396 +A+ + ++ D+ +LS+ + E EF GQTK KL + A+ V Sbjct: 289 VFNDFAQQKSIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKL 453 E+ +L +N EA K++ + + ++R+ + + + ++ + K L GKL Sbjct: 349 EDICYKQVLLWLNKNQQEANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELFIVEG+SAGGSAK R+R QA+LPL+GKI+N + N +I Sbjct: 409 APAQSKNKAEKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + ++ +LG + +L Y+K+IIMTDAD DGAHI LLLTF ++ M +LIE+ H++ Sbjct: 469 VAIISSLGTGIGQDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVY 528 Query: 574 LISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL++I+ + ++VYA +E ++I+E K ++ R+KGLGEM A QL +T Sbjct: 529 IAQPPLYKISFKNKEAVYAWNENELKQIIE-----NKSNFDLQRYKGLGEMNAQQLWDTT 583 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683 M+ KRTL++V+I L + I LMG K D R ++I+ F +DD Sbjct: 584 MNPEKRTLIKVKIED----LAIAERRIFTLMGDKIDIRKQWIKNNVHFSLDD 631 >gi|315179146|gb|ADT86060.1| DNA topoisomerase IV subunit B [Vibrio furnissii NCTC 11218] Length = 626 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 359/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA ++V Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F P+ K F Sbjct: 118 VVNALSKRVEVTVRRDGQVYDIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPETKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ +S E +++ GLK YL ++ Sbjct: 178 N-FSVTRLINNLRAKAVLCPGLEITFSDKVNNNE-------YRWFYEDGLKDYLAEGVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +L+ E FTG+ + T SY N I T +GGTH +GLR L Sbjct: 230 YTLLPEEPFTGEFSAETEA-ATWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + P A +L E I + R+R ++V RK LPGKL DCSQ Sbjct: 349 VVKDAFSLWLNEKPQLAEQLAEVCIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSQ 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN +++ +Q++ D+ Sbjct: 407 QDLSRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSGDQVLGSQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E LRY KV I+ DAD DG HIA+LL F + L+ + H+++ PP Sbjct: 467 ALGIDPDSDNLET-LRYGKVCILADADSDGLHIATLLCALFTRHFSALVREGHIYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA D+ K ILE K K K+ + RFKGLGEM QL+ET MD N R Sbjct: 526 LYRIDCGKEVFYALDDNEKDAILERLAKK-KAKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ I+ K T++ ++ L+G K AD+R ++Q + Sbjct: 585 RLVQLTIDD----AKATEEMMDMLLGKKRADDRRNWLQSNGDLAE 625 >gi|304372931|ref|YP_003856140.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1] gi|304309122|gb|ADM21602.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1] Length = 649 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 237/652 (36%), Positives = 363/652 (55%), Gaps = 32/652 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y ++++L+GL+ VR RPGMYIG TD + LHHL E++ NA+DE +AG+A I VSL Sbjct: 2 SSYTVENLKVLKGLDAVRKRPGMYIGSTDFEGLHHLVWEIVSNAVDEALAGFAKNIYVSL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + NG + V D+GRGIP+E H S +E++ T LHAGGKF + Y+ SGGLHGVG SV Sbjct: 62 EENGSIVVEDDGRGIPIEKH--TSGLSGVELVFTELHAGGKFSDEVYKNSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L V V + N + KF G + NK+GTR+ F PD KIF + Sbjct: 120 VNALSSKLIVNVYKNNKNYQTKFINGGQIEQRTTVVGDSNKKGTRVQFWPDKKIF-AQNK 178 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + +L +K E +KE F+F G+K +++ + ++ Sbjct: 179 FSFDMISERLRETCFLISELKITL-------EDQITFQKEAFFFKNGIKDFVEFINQGKT 231 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTR 340 L++ + ++ VE A + + + I S+ N I T GGTHE GL+ AL R Sbjct: 232 LLNKQAALINETQEKI---NVEIAFQYTDSYSDSIISFVNNIKTKSGGTHELGLKQALVR 288 Query: 341 GIKKYAELT--QNKRAISIISDDLMISAVGILSVFIRE--PEFAGQTKTKLVSLDAQRTV 396 +A+ + ++ D+ +LS+ + E EF GQTK KL + A+ V Sbjct: 289 VFNDFAQQKSIFKNKTHTLDILDIKEGLTLVLSLKVPEFLLEFVGQTKDKLGTQIAKSVV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKL 453 E+ +L +N +A K++ + + ++R+ + + + ++ + K L GKL Sbjct: 349 EDICYKQVLLWLNKNQQDANKIINKIKDAFDQRMSTKLSKIESKKSKDASKEKKILSGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A ELFIVEG+SAGGSAK R+R QA+LPL+GKI+N + N +I Sbjct: 409 APAQSKNKAEKELFIVEGESAGGSAKLGRDRKFQAILPLKGKIINAEKTRLIDLLKNNEI 468 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + ++ +LG + +L Y+K+IIMTDAD DGAHI LLLTF ++ M +LIE+ H++ Sbjct: 469 VAIISSLGTGIGQDFNINNLEYDKIIIMTDADTDGAHIQILLLTFIFRYMKELIEKGHVY 528 Query: 574 LISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 + PPL++I+ + ++VYA +E ++I+E K ++ R+KGLGEM A QL +T Sbjct: 529 IAQPPLYKISFKNKEAVYAWNENELKQIIE-----NKSNFDLQRYKGLGEMNAQQLWDTT 583 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683 M+ KRTL++V+I L + I LMG K D R ++I+ F +DD Sbjct: 584 MNPEKRTLIKVKIED----LAIAERRIFTLMGDKIDIRKQWIKNNVHFSLDD 631 >gi|294507492|ref|YP_003571550.1| DNA gyrase subunit B [Salinibacter ruber M8] gi|294343820|emb|CBH24598.1| DNA gyrase subunit B [Salinibacter ruber M8] Length = 643 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 379/650 (58%), Gaps = 18/650 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y I +LEGLEPVR RPGMYIGGT LHH+ EV+DNA+DE GYA+ IEV L Sbjct: 4 TYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEVVLH 63 Query: 103 GNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V DNGRGIPV++HP+ T+++ILTTLH+GGKFD S Y SGGLHGVG+SV Sbjct: 64 EDGESISVSDNGRGIPVDDHPE-KGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+EL TV R + Q+F +G P++ L+ ++ GT I FRPDP IF Sbjct: 123 VNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESV-E 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD + + + K YL+ +K + + E+ E + GG++ YL +E+ Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDE-------TSGERHELHHEGGIQEYLDYLVEDLQ 234 Query: 282 LISSEIFTGKTEKKGTHRGTV-EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339 + E E A+ W + ++ ++ N I T++GGTHE GL+ + Sbjct: 235 VSPIHDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIR 294 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I+ + + + I DD VGI+++F +P+F GQTK KL + + V Sbjct: 295 AVIRSFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSG 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADC 456 ALR + YL + + V++ ++ R RR + + K L+LPGKLADC Sbjct: 355 ALRTELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S + ELFIVEGDSAGGSAKQAR+R QAVLPLRGK+LN A ++++NN+++ ++ Sbjct: 415 SSSTPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNI 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 VQALGC DLRY KVI++ DAD DG HIA+LLLTFFY+ M LIE + + Sbjct: 475 VQALGCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQ 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G ++ +A DE K++IL+E + G+ ++I RFKGLGEM+ L ET + Sbjct: 535 PPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSP 594 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL V I + T+ +I +LMG + RFKFI + A+ D++ Sbjct: 595 EGRRLLEVSIPDTERMV--TEQTITELMGRDSSARFKFIMQHAAEADELD 642 >gi|238760033|ref|ZP_04621184.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236] gi|238701720|gb|EEP94286.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236] Length = 631 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 248/648 (38%), Positives = 362/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL ++ Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEKAFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I+ D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTISDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|15602235|ref|NP_245307.1| DNA topoisomerase IV subunit B [Pasteurella multocida subsp. multocida str. Pm70] gi|12720616|gb|AAK02454.1| ParE [Pasteurella multocida subsp. multocida str. Pm70] Length = 632 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 260/647 (40%), Positives = 364/647 (56%), Gaps = 24/647 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AGYAN IEV Sbjct: 2 TSNYSAQEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYANKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE SGGLHGVGIS Sbjct: 59 LHKDQSLEVIDNGRGMPVDIHP-VEKLSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + VTV R ++ F G + LE R GT + F+P+PK F Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGRKVEELEVIGTCGRRNTGTTVHFKPNPKYFDSD 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L ++ + E + + + GL YL + Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDKINQTE-------DCWCYEDGLADYLSEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + F G + V WA+ W E + SY N I T +GGTH +GLR Sbjct: 230 LETLPETPFIGDFKGDTE---AVSWALLWLPEGGDLLSESYVNLIPTIQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +DD+ +LS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAVFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ +A L E I ++ RLR ++V RK + LPGKLADC Sbjct: 347 AGVVKDAFSLWLNQHVQQAELLAEMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 SQ TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN SE++ ++ +I D+ Sbjct: 405 SQQDLDKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSSEIHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG ++ LRY KV I+ DAD DG HIA+LL F + L+++ H+++ Sbjct: 465 AVALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQKGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G YA DE K IL+ K KGK + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDLGKDVFYALDESEKDAILDRLKGK-KGKPNVQRFKGLGEMNPLQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + T + ++ L+ K A++R ++Q + +D Sbjct: 583 TRRLVQLTYALEQEEQAATLELMDMLLAKKRAEDRKNWLQTKGDQVD 629 >gi|325962992|ref|YP_004240898.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV) subunit beta [Arthrobacter phenanthrenivorans Sphe3] gi|323469079|gb|ADX72764.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 702 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 239/700 (34%), Positives = 344/700 (49%), Gaps = 61/700 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S +Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ + I+ Sbjct: 2 APSSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L + + + D+GRGIP++ PK + +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 IILHADNSVEIHDDGRGIPIDKEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199 SVVNALS L V V R + F RG P + K Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFQDTGSKSDPAAPFTPFVDDSVLDIVG 180 Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 R GTRI + D +IF A F L + ++L +K ++ I G Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRIPGTPG 240 Query: 257 IP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298 +E F+ GG+ +++ + ++ G + K T Sbjct: 241 EAGVHEEVFHHDGGISEFVEFLAADPAVTDVWRLHGSGKFKETVPVLDERGHSQLAEVER 300 Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W S+ N I T +GGTH+SG AL + +K E K Sbjct: 301 DCEVDVALRWGIGYESTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVESNARKLKAGN 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I DD+ +L+V + EP+F GQTK L + + + VE + Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREISAKLSSANRN 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + ++ LLE ++ + R+ R +E RK A+ +P KLADC + +ELFIV Sbjct: 421 DKAQSALLLEKIVNEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVDRSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK AR+ QA+LP+RGKILNV A + +N + L+Q +G + + Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 RY KVI+MTDADVDGAHI +LLLT F++ M +IE+ +F PPL R+ Sbjct: 541 LAAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVINAGQ 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E +L K GK K I R+KGLGEM A QL ET MD RTL + Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRK 660 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V I + K ++ + LMG+ R FI A+ +D Sbjct: 661 VGIE----NAKQAEEIFDLLMGSDVSPRKDFIIAGAASLD 696 >gi|292486926|ref|YP_003529796.1| DNA topoisomerase IV subunit B [Erwinia amylovora CFBP1430] gi|292900680|ref|YP_003540049.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946] gi|291200528|emb|CBJ47657.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946] gi|291552343|emb|CBA19388.1| DNA topoisomerase IV, B subunit [Erwinia amylovora CFBP1430] gi|312170996|emb|CBX79255.1| DNA topoisomerase IV, B subunit [Erwinia amylovora ATCC BAA-2158] Length = 631 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 253/646 (39%), Positives = 362/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADSIEVLSGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L V + GTR+ F PD + F D Sbjct: 120 VNALSKRVEVTVRRNAEVYEMAFENGDKVQDLTVTGTVAKRNTGTRVQFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDQLNKTE-------QSWCYADGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGAFSGDVE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQAAEMLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKNGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPGVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTISD--EDVNQTLAVMDMLLAKKRSEDRRNWLQEKGDSAE 628 >gi|269468716|gb|EEZ80341.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [uncultured SUP05 cluster bacterium] Length = 627 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 245/642 (38%), Positives = 365/642 (56%), Gaps = 22/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDA+SI +L GLEPVR RPGMY TD + +HL EVIDN++DE +AG+A+ I V L Sbjct: 4 YDAASIEVLTGLEPVRKRPGMY---TDTERPNHLAQEVIDNSVDEAVAGHASKINVVLYK 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 NG L+V D+GRG+PV+ HPK + +E+ILT LHAGGKF N +Y+ SGGLHGVGISVVN Sbjct: 61 NGSLSVEDDGRGMPVDIHPK-EGQPGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISVVN 119 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS + + + R + F+ G + LE+ V + GT + F PD + F D F Sbjct: 120 ALSTSVEIWIKRDAKQYYITFADGFKKTELEELGNVGKRNTGTMVKFMPDTQ-FFDTIKF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 RL +SKA L ++ + + + +++ + GLK YL L+ Sbjct: 179 SVTRLRHNLRSKAVLCPGLEINFYNEVD-------GTTDKWIYKEGLKDYLSMALDGLDC 231 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + + F + A N SY N I T GGTH +GLR LT + Sbjct: 232 LPTSPFVVDFTS-PEQQLNCSLAWTEYNTNVVAESYVNLIPTINGGTHVNGLRSGLTDAL 290 Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 K++ E + I I DD+ +LS+ I +P+F+GQTK +L S ++ V N ++ Sbjct: 291 KEFCEFRNLIPKNIKITPDDVWQKIAYVLSIKILDPQFSGQTKERLSSRESAGFVSNVIK 350 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIA 461 D F +L Q+ A K+ E I ++ RL+ +++ RK I LPGKL+DC+ + Sbjct: 351 DAFSLWLNQHTNVAEKIAELAIMNAQARLK--TGKKIVRKKIISGPALPGKLSDCTSSDL 408 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 + TE+F+VEGDSAGGSAKQAR++ QA+LPLRGKILN SE++ + +I D+ A+G Sbjct: 409 NQTEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDISVAIG 468 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 S +LRY K+ I+ DAD DGAHIA+L+ F + L+ + H+F+ PPL+R Sbjct: 469 LEPDSSDL-SELRYGKICILADADSDGAHIATLICALFVKHFPKLVREGHVFVAMPPLYR 527 Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTL 640 + G + YA D + I+ + + K KI++ RFKGLGEM SQL+ET M + R L Sbjct: 528 VDAGKQVHYALDNNERDSIIRKIESENKRVKIQVQRFKGLGEMNPSQLRETTMFPDTRRL 587 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +++ ++ L + ++K +A +R ++++E+ + + Sbjct: 588 IQLTLDNPLQVEQTMDMLLSK---KRAPDRKQWLEEKGNLAN 626 >gi|254362507|ref|ZP_04978612.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica PHL213] gi|153094104|gb|EDN75008.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica PHL213] Length = 635 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 254/650 (39%), Positives = 370/650 (56%), Gaps = 26/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+A+ I+V Sbjct: 2 SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFADKIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L VVDNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGI Sbjct: 59 ILHADNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS+ + + + R ++S F+ G+ + L + + GT + F P+PK F Sbjct: 118 SVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKKQTGTTVRFYPNPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + E E +Y+ GL YL L Sbjct: 178 PR-FSVSRLRHLLRAKAVLCPKLTINFIDKINNTE-------ESWYYEDGLSDYLSEALN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G + V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GYETVPNPPFIGDVTAETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRN 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L + + ++ E+ + + + +DD+ +LS+ I+EP+FAGQTK +L S A Sbjct: 287 GLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSY 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V++ L+D F +L QN + E I ++ R+R ++V RK + LPGKLAD Sbjct: 347 VDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMR--AAKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D Sbjct: 405 CTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S E+LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 IAVALGIDPDSDNL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQNGHVYVA 523 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET M+ Sbjct: 524 MPPLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTME 582 Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+++ + + + +T + ++ L+G K A++R +++Q R D Sbjct: 583 PSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWLQNRGDEAD 632 >gi|167854608|ref|ZP_02477389.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755] gi|167854363|gb|EDS25596.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755] Length = 633 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 254/650 (39%), Positives = 377/650 (58%), Gaps = 26/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+AN I+V Sbjct: 2 SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFANQIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L VVDNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGI Sbjct: 59 ILHSDNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS+ + +T+ R I++ F+ G+ + L+ + + GT + F P+PK F Sbjct: 118 SVVNALSESVEITIKRNGEIYTIAFANGVKVEELKVIGSCPKRQTGTTVRFYPNPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ ++ + +E +Y+ GL+ YL L+ Sbjct: 178 P-KFSVSRLRHLLRAKAVLCPKLTINFTD-------HINNTQETWYYEDGLRDYLTDTLK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + + +F G+ + V WA++W E E SY N I T GGTH +GLR Sbjct: 230 EYEYLPNPLFVGEVIGETE---AVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L + + ++ + + + + +DD+ +LS+ ++EP+FAGQTK +L S A Sbjct: 287 GLFKAMAEFCDFRNLLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASY 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VEN+++D F +L QN A +L E I ++ RLR +++V RK + LPGKLAD Sbjct: 347 VENSVKDAFSLWLNQNVQVAEQLAEMAISSAQNRLR--AEKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN +++ + ++ D Sbjct: 405 CISQDLMRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG ++ LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 IAVALGIDPDNEDI-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVA 523 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD Sbjct: 524 MPPLYRIDIGKDEVHYALDESEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582 Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ + + + + T + ++ L+ K A++R +++Q+R D Sbjct: 583 PNTRRLVQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEAD 632 >gi|113971563|ref|YP_735356.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4] gi|114046265|ref|YP_736815.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7] gi|113886247|gb|ABI40299.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4] gi|113887707|gb|ABI41758.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7] Length = 628 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 246/644 (38%), Positives = 353/644 (54%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L+ R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+Y+ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------HTNEVHEWYYESGLTDYLKAAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E F G K + SY N I T GGTH +G R L Sbjct: 230 NLMLPEEPFIGSF-KGQIEAADWAITWLPEGGDAINESYVNLIPTPLGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ A ILSV +++P+FAGQTK KL S + V Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +RD F +L N A L E I +++RL+ K +V RK LPGKL DCS Sbjct: 349 IVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 467 AIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVYIAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE K+ IL+ ++ KGK++++RFKGLGEM QL+ET MD N Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ I+ + L ++ +R +++++ Sbjct: 586 RRLVQLTIDDAEETNSLMDML---LAKKRSPDRKNWLEDKGDMA 626 >gi|253686724|ref|YP_003015914.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753302|gb|ACT11378.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 254/648 (39%), Positives = 363/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F+ G + L R GTR+ F PD + F D Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFANGDKVQDLTVTGTCGRRNTGTRVHFWPD-EKFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYQDGLNDYLCEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E + SY N I T GGTH +GLR Sbjct: 230 GLITLPEKPFLGSITGDTE---AVDWALLWLPEGGELLMESYVNLIPTPMGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV ++EP+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 ISVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I +D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIKED--DIDQTMAMMDMLLAKKRSEDRRNWLQEKGDKAE 628 >gi|50119294|ref|YP_048461.1| DNA topoisomerase IV subunit B [Pectobacterium atrosepticum SCRI1043] gi|49609820|emb|CAG73254.1| topoisomerase IV subunit B [Pectobacterium atrosepticum SCRI1043] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 253/648 (39%), Positives = 360/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 AQSSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSGKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R ++ F G + L R GTR+ F PD + F D Sbjct: 118 SVVNALSTRVEVTVKRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPD-EKFFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 SARFSVSRLTHLLKAKAVLCPGVEIIFKDKVNNTE-------QRWCYLDGLNDYLCEAIN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G V+WA+ W E E SY N I T GGTH +GLR Sbjct: 230 GLITLPEKPFLGSISGDTE---AVDWALLWLPEGGELLTESYVNLIPTPMGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV ++EP+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQEPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLNRTELFLVEGDSAGGSAKQAREREFQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSTDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVLGGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPPQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ IN + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTINDEEMD--QTMAMMDMLLAKKRSEDRRNWLQEKGDRAE 628 >gi|152971961|ref|YP_001337070.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896538|ref|YP_002921278.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae NTUH-K2044] gi|262042299|ref|ZP_06015464.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330008928|ref|ZP_08306334.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3] gi|150956810|gb|ABR78840.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548860|dbj|BAH65211.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040363|gb|EEW41469.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535028|gb|EGF61552.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 363/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V V R ++S F G + L + GT + F PD + F D Sbjct: 120 VNALSKRVEVNVRRDGQVYSIAFENGEKVEDLHVTGTCGKRNTGTSVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFRDQVNNSE-------QSWCYADGLNDYLSEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + F G + V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PLLPEKPFVGAFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALTEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + T ++ L+ K +++R ++QE+ D Sbjct: 585 RRLVQLVISD--EDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMAD 628 >gi|238762440|ref|ZP_04623411.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638] gi|238699425|gb|EEP92171.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 250/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+I+ LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELIMCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R I + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGIKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|197336300|ref|YP_002157023.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11] gi|197317790|gb|ACH67237.1| DNA topoisomerase IV, B subunit [Vibrio fischeri MJ11] Length = 626 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAKKVEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP S +E+IL LHAGGKF YE SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFEHGDKVSDLTVTGTCGRRNRGTSVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + E + + GLK YL + Sbjct: 178 -KFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHN-------WCYEDGLKDYLLEGVTG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 +L+ FTG G +WA+ W E E SY N I T +GGTH +G+R Sbjct: 230 FTLLPEIPFTGAFSGTGE---AADWAVTWLPEGGELVAESYVNLIPTAQGGTHVNGMRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEFRNLVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC Sbjct: 347 SGVVKDAFSLWLNEKPQIAEQLAEACIANAHRRMR--AAKKVVRKKIASGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+LL + + L++ H+++ Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DEE K+ +L+ + + KI + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDCGKEVFYALDEEEKEGVLDRLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + T + ++ L+G K AD+R ++Q + Sbjct: 583 TRRLVQLTIDDD----EQTDEMMDMLLGKKRADDRRAWLQSNGDQAE 625 >gi|332162978|ref|YP_004299555.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604198|emb|CBY25696.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667208|gb|ADZ43852.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862268|emb|CBX72429.1| DNA topoisomerase 4 subunit B [Yersinia enterocolitica W22703] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 361/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAHRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|268590586|ref|ZP_06124807.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131] gi|291313974|gb|EFE54427.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131] Length = 631 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 362/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ IEV L Sbjct: 4 SSYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHASHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + ++ F G + L + GT + F PD F Sbjct: 120 VNALSKRIEVTVRRDSQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDGSYFDSP- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL ++KA L VK + E + + + GL YL ++ Sbjct: 179 KFSVTRLTHNLKAKAVLCPGVKITFKDKLNDTE-------QSWCYSDGLTDYLMESIDGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG+ + +WA+ W E E SY N I T GGTH +GLR L Sbjct: 232 EALPPKPFTGEFSGETE---AAQWALLWLPEGGELLTESYVNLIPTALGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKAGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G ++ YA DE K +LE + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKETFYALDESEKNAVLERLSRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLIIDD--ENYQETLAVMDMLLAKKRSEDRRNWLQEKGDIAE 628 >gi|83815720|ref|YP_445608.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855] gi|83757114|gb|ABC45227.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM 13855] Length = 643 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 379/650 (58%), Gaps = 18/650 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y I +LEGLEPVR RPGMYIGGT LHH+ EV+DNA+DE GYA+ IEV L Sbjct: 4 TYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEVVLH 63 Query: 103 GNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V DNGRGIPV++HP+ T+++ILTTLH+GGKFD S Y SGGLHGVG+SV Sbjct: 64 EDGESISVSDNGRGIPVDDHPE-KGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGVSV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+EL TV R + Q+F +G P++ L+ ++ GT I FRPDP IF Sbjct: 123 VNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESARGTGTDIYFRPDPDIFESV-E 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD + + + K YL+ +K + + E+ E + GG++ YL +E+ Sbjct: 182 FDPSWIREHLDVKTYLNRDLKIIFRDE-------TSNERYELHHEGGIQEYLDYLVEDLQ 234 Query: 282 LISSEIFTGKTEKKGTHRGTV-EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALT 339 + E E A+ W + ++ ++ N I T++GGTHE GL+ + Sbjct: 235 VSPIHDDVFMMEDDDLDGDGRLEIALQWTDAPKEQLHTFVNGIPTEDGGTHEQGLKSGIR 294 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I+ + + + I DD VGI+++F +P+F GQTK KL + + V Sbjct: 295 AVIRSFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSG 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK--LRLPGKLADC 456 ALR + YL + + V++ ++ R RR + + K L+LPGKLADC Sbjct: 355 ALRTELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADC 414 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S + ELFIVEGDSAGGSAKQAR+R QAVLPLRGK+LN A ++++NN+++ ++ Sbjct: 415 SSSTPSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNI 474 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 VQALGC DLRY KVI++ DAD DG HIA+LLLTFFY+ M LIE + + Sbjct: 475 VQALGCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQ 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G ++ +A DE K++IL+E + G+ ++I RFKGLGEM+ L ET + Sbjct: 535 PPLYRIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSP 594 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL V I + T+ +I +LMG + RFKFI + A+ D++ Sbjct: 595 EGRRLLEVSIPDTERMV--TEQTITELMGRDSSARFKFIMQHAAEADELD 642 >gi|326796567|ref|YP_004314387.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1] gi|326547331|gb|ADZ92551.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1] Length = 632 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 368/645 (57%), Gaps = 24/645 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A SI +L GLEPV+ RPGMY T+ +HL EVIDN++DE +AG+A+ IEV+L Sbjct: 4 KEYNAGSIEVLSGLEPVQKRPGMY---TETTRPNHLGQEVIDNSVDEALAGHADKIEVTL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V DNGRG+PV+ HP+ S +E+ILT LHAGGKF +Y+ SGGLHGVG+SV Sbjct: 61 YKDGSLSVEDNGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSGDSYQFSGGLHGVGVSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS++L V V R + F+ G S L + V + GT++ F+ DPK F Sbjct: 120 VNALSNQLDVWVKRDGKQYHIAFADGFKTSELAEVGTVGKKNTGTKVKFKADPKYFDSA- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L + + E EE+++ GLK YL + Sbjct: 179 KFSLSRLRHLLKAKAVLCSGLHVVFVDQSGSEETR-----EEWFYQDGLKDYLALANKGY 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ E F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 234 ELLPEEPFIGSL---IETTQGVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGL 290 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ + R + + ++D+ +LS ++EP+F+GQTK +L S + Sbjct: 291 LEAIREFCDFHNLLPRGVKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVPFIT 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L ++ +A K+ + +I +++R+R ++V RK + LPGKLADC+ Sbjct: 351 ATVKDAFSLWLNKHVEDAQKIADVIISSAQKRMR--ASKKVVRKKVTQGPALPGKLADCA 408 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q+I D+ Sbjct: 409 GQDSSRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDQSQVLASQEIHDIS 468 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + LRY KV I+ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 469 VALGVDPGQEDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFPTLVNSGHVFVAMP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA D+E K I+ + + K GK+++ RFKGLGEM QL+ET M + Sbjct: 528 PLYRIDIGKEVHYALDDEEKDIIIHKIEAEKKRGKLDVQRFKGLGEMNPPQLRETTMAPD 587 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ ++ L + + ++K +A +R +++ + Sbjct: 588 TRRLIQLTMDDPLETGEVLDKLLSK---KRAADRKDWLETYGNLA 629 >gi|315225745|ref|ZP_07867533.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia denticolens DSM 10105] gi|315119877|gb|EFT83009.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia denticolens DSM 10105] Length = 701 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 235/668 (35%), Positives = 355/668 (53%), Gaps = 29/668 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+YDAS +R+LEGLE VR+RPGMYIG T + LHHL E++DN++DE +AGYA IEV++ Sbjct: 40 DHYDASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTI 99 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + VVD+GRGIPV+ P KS +E ++T LHAGGKF Y +SGGLHGVGISV Sbjct: 100 LEDNGIRVVDDGRGIPVDEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISV 158 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++Q + P++PL+K GT +TF DP IF D+ Sbjct: 159 VNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGEEETTGTSVTFWADPAIF-DQ 217 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPG 267 +D L Q A+L+ +K + + + + + + + Sbjct: 218 TDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVTYQYVN 277 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 G++ Y+ ++ + E + + + E A+ W + ++ NTI T Sbjct: 278 GIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFANTISTT 337 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTHE G R ALT + +YA + ++ DD+ V ++SV + P+F GQT Sbjct: 338 EGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQFEGQT 397 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKT 442 KTKL + A+ V+ + + + + +P EA +++ +E ++ + RK+ Sbjct: 398 KTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARETTRRKS 457 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 +P KL DC + ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A Sbjct: 458 IFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERA 517 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ + I L+ A+G + +RY K+IIM DADVDGAHIA+L LT F++ Sbjct: 518 SFDRMMKSDTIESLITAVGGGYGEDFDINKVRYHKIIIMADADVDGAHIATLNLTLFFRY 577 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFK 618 + +I ++++ PPL+R+ + + + + ++LEE + G+ I R+K Sbjct: 578 IRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYK 637 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM +L ET MD + R L ++ I ++ + LMG + R FIQ A Sbjct: 638 GLGEMTYQELWETTMDPDHRILKQIHIED----AAQADETFSMLMGEDVEPRRLFIQRNA 693 Query: 679 SFIDDVGT 686 + Sbjct: 694 HDARFIDA 701 >gi|330432984|gb|AEC18043.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179] Length = 636 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 261/651 (40%), Positives = 367/651 (56%), Gaps = 27/651 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + + Y+A+ I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AGYA IEV Sbjct: 2 SENIYNANDITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKIEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N Y+ +GGLHGVGI Sbjct: 59 ILYQDQSLEVIDNGRGMPVDIHP-VEKISGIELILTKLHAGGKFSNKNYQFAGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V+V R I+ F+ G + LE R GT + F P+ K F Sbjct: 118 SVVNALSARVDVSVKRNGEIYHIAFADGKKIEELEVVGTCGRRTTGTAVRFWPNAKYFDL 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + E E + + GL YL ++ Sbjct: 178 A-KFSVSRLRHLLRAKAVLCPGLEIKFIDKVNQTE-------ERWCYQDGLSDYLLEAVD 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + + F G+ + V WA+ W E I SY N I T GGTH +GLR Sbjct: 230 GVVTLPEQPFIGEFKSDTE---AVNWALFWLPEGGNIIGESYVNLIPTPLGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ ILS+ +++P+FAGQTK +L S + Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWERCAYILSLKMQDPQFAGQTKERLSSRQSAVF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN +A +L E I ++ RLR ++V RK + LPGKLAD Sbjct: 347 VSGVVKDSFSLWLNQNIQQAEQLAEMAIASAQRRLR--SAKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+Q TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ +Q+I D Sbjct: 405 CTQQDLSRTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVAGDQVLGSQEIHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + LRY KV I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 IAVALGIDPDTDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEEGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE K+ ILE K KGKI + RFKGLGEM QL+ET MD Sbjct: 524 MPPLYRIDLGKEVHYALDENEKEAILERL-KSKKGKINVQRFKGLGEMNPLQLRETTMDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKL-M---GTKADERFKFIQERASFID 682 N R L+++ + S + ++ L M +AD+R ++QE+ + Sbjct: 583 NTRRLVQLVYQPNQGSDDEADHTLEMLDMLLAKKRADDRKNWLQEKGDHAE 633 >gi|164510808|emb|CAK18887.1| topoisomerase IV subunit B [Staphylococcus intermedius] Length = 637 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 227/629 (36%), Positives = 342/629 (54%), Gaps = 31/629 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD++ LHHL EV+DN++DE++ GY N I V+++ + +TV DNGRG+P H Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS+ L V + R IF Q+ Sbjct: 59 RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLTVEIHRDGEIFEQQ 118 Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F+ G +P + L KK K + GT +TF+PDP+IF F+ L + Q A+L +K Sbjct: 119 FAHGGVPQTKLIKKGKTKR-TGTTVTFKPDPEIFKAATSFNFETLSERLQESAFLLQNLK 177 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + E+ E +++ G+K ++ E + ++ T + + Sbjct: 178 ITLEDRRAGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTSNEIEVDVSF 232 Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISD 360 ++ + + I S+ N + T +GGTHE G + A+TR +YA + ++ + Sbjct: 233 QYNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGN 289 Query: 361 DLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 D+ I+SV I E +F GQTK+KL + +A+ V+ + + YL + + L Sbjct: 290 DIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSL 349 Query: 419 LEWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAG 475 ++ I+ + R RK RE R K L GKL EL++VEGDSAG Sbjct: 350 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 409 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK R+R QA+LPLRGK++N A E I N++I ++ +G + + ED Y Sbjct: 410 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLEDSNY 469 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYA 591 ++IIMTDAD DGAHI LLLTFF++ M L+ +++ PPL+++ +G K YA Sbjct: 470 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 529 Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 +E +K+ E K + R+KGLGEM QL ET M+ RTL+RV+I+ ++ S Sbjct: 530 WTDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRS 585 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680 + ++ LMG K R ++I+ F Sbjct: 586 SQR----VSTLMGDKVAPRREWIERHVQF 610 >gi|294786215|ref|ZP_06751469.1| DNA gyrase, B subunit [Parascardovia denticolens F0305] gi|294485048|gb|EFG32682.1| DNA gyrase, B subunit [Parascardovia denticolens F0305] Length = 704 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 235/668 (35%), Positives = 355/668 (53%), Gaps = 29/668 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 D+YDAS +R+LEGLE VR+RPGMYIG T + LHHL E++DN++DE +AGYA IEV++ Sbjct: 43 DHYDASDLRVLEGLEAVRIRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGYATHIEVTI 102 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + VVD+GRGIPV+ P KS +E ++T LHAGGKF Y +SGGLHGVGISV Sbjct: 103 LEDNGIRVVDDGRGIPVDEVP-GEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHGVGISV 161 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++Q + P++PL+K GT +TF DP IF D+ Sbjct: 162 VNALSTRVDVEVRRQGFHWTQTYIDQKPIAPLKKGQPMGEEETTGTSVTFWADPAIF-DQ 220 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI------------PEKEEFYFPG 267 +D L Q A+L+ +K + + + + + + + Sbjct: 221 TDYDFETLRARFQQMAFLNKGLKISLTDLRSVDQAGDEVTGDGDNPLEELHQTVTYQYVN 280 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 G++ Y+ ++ + E + + + E A+ W + ++ NTI T Sbjct: 281 GIEDYVNYLVKTKKANPIEEDIIALDAEDPQQGISAEIAMQWTSAYSESVHTFANTISTT 340 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTHE G R ALT + +YA + ++ DD+ V ++SV + P+F GQT Sbjct: 341 EGGTHEEGFRAALTSLVNRYAREKGILKDKDENLSGDDVREGLVAVISVKLTVPQFEGQT 400 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE-RSEERLRRRKQREVNRKT 442 KTKL + A+ V+ + + + + +P EA +++ +E ++ + RK+ Sbjct: 401 KTKLGNAIAKTFVQRVMTERMNDWFDAHPNEAKAIIQKGMEAARARLAAKKARETTRRKS 460 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 +P KL DC + ELFIVEGDSAGGSA Q RN QA+LPLRGKILN A Sbjct: 461 IFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNTERA 520 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ + I L+ A+G + +RY K+IIM DADVDGAHIA+L LT F++ Sbjct: 521 SFDRMMKSDTIESLITAVGGGYGEDFDINKVRYHKIIIMADADVDGAHIATLNLTLFFRY 580 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGK---GKIEISRFK 618 + +I ++++ PPL+R+ + + + + ++LEE + G+ I R+K Sbjct: 581 IRPMIYAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLEEGRSKGRQLPKGEGIQRYK 640 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM +L ET MD + R L ++ I ++ + LMG + R FIQ A Sbjct: 641 GLGEMTYQELWETTMDPDHRILKQIHIED----AAQADETFSMLMGEDVEPRRLFIQRNA 696 Query: 679 SFIDDVGT 686 + Sbjct: 697 HDARFIDA 704 >gi|170728515|ref|YP_001762541.1| DNA topoisomerase IV subunit B [Shewanella woodyi ATCC 51908] gi|169813862|gb|ACA88446.1| DNA topoisomerase IV, B subunit [Shewanella woodyi ATCC 51908] Length = 631 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 242/649 (37%), Positives = 363/649 (55%), Gaps = 26/649 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+ Sbjct: 3 AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKID 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V+D+GRG+P++ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 60 VILHKDNSLEVIDDGRGMPIDIHPE-EGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVG 118 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS+ + +TV R ++ F G + L + R GTR+ F P P F Sbjct: 119 ISVVNALSNRVEITVRRNGLVYDMAFEHGDKVEDLTETGTCGRRNTGTRVHFWPTPSYFD 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F +L + ++KA L +K + E E+++ GL YL + + Sbjct: 179 SAN-FSIPKLTYLLRAKAVLCPGLKIKFVNK-------QTDETTEWHYESGLTDYLISSV 230 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335 ++ ++ + F G + + V+WAI W E + SY N I T GGTH +G R Sbjct: 231 KDSLMLPEDPFVGSMKGN---QEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R I + +D+ + ILSV +++P+FAGQTK KL S + Sbjct: 288 QGLLDSMREFCEFRNLIPRGIKLTPEDIWDRSSFILSVKMQDPQFAGQTKEKLSSRQSAA 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V +RD F +L + +A L E I +++RL+ ++V RK LPGKL Sbjct: 348 FVSGIVRDAFSLWLNTHTDQAAALAEMCINNAQKRLK--SAKKVARKKVTSGPALPGKLT 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+GC + +LRY K+ I+ DAD DG HIA+LL F + L+E H+++ Sbjct: 466 DISVAIGCDPDCEDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHVYV 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPLFR+ G + YA DE K IL+ + KGK++++RFKGLGEM QL+ET M Sbjct: 525 AMPPLFRVDVGKEVFYALDEAEKDGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D N R L+++ I+ +++ L ++ +R +++ + D Sbjct: 585 DPNTRRLVQLTIDDVEDTMAVMDML---LAKKRSGDRKTWLETKGDLAD 630 >gi|239994107|ref|ZP_04714631.1| DNA topoisomerase IV subunit B [Alteromonas macleodii ATCC 27126] Length = 631 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 249/645 (38%), Positives = 359/645 (55%), Gaps = 21/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y++ +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASNIKVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y SGGLHGVGIS Sbjct: 59 LHEDQSLEVIDDGRGMPVDIHPE-EGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VT+ R + ++ F G + L+ + + GTR+ F PDP+ F Sbjct: 118 VVNALSTRVEVTIRRDSNVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F A+RL+ ++KA LS ++ + + E +E+Y+ GLK YL +E Sbjct: 178 -KFSASRLVHNLRAKAVLSPGLRIRF-------DNKITKESQEWYYEDGLKDYLYQAVEE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + S+ T T + SY N I T +GGTH +GLR L Sbjct: 230 FETLPSDTPFVGTFSGNTEAADWAVMWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ ILS +++P+FAGQTK +L S A V Sbjct: 290 ESMREFCEFRNLMPRGVKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ A L E I ++ RLR+ ++V RK + LPGKL DCS Sbjct: 350 VVKDAFSLWLNQHTEIAEALAEMCINNAQRRLRQT--KKVARKKVTQGPALPGKLTDCSS 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q+I D+ Sbjct: 408 QDISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 468 ALGIDPDSTDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA DE KQ IL+ + K GK+ + RFKGLGEM QL+ET M N Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMGPNT 586 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I ++ L ++ +R +++ + + + Sbjct: 587 RRLVQLTIEDAEEMMELMDML---LAKKRSGDRKTWLESKGNMAE 628 >gi|220912381|ref|YP_002487690.1| DNA topoisomerase IV subunit B [Arthrobacter chlorophenolicus A6] gi|219859259|gb|ACL39601.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus A6] Length = 702 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 238/700 (34%), Positives = 343/700 (49%), Gaps = 61/700 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ + I Sbjct: 2 APSSEYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L + + + D+GRGIP++ PK + +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 IILHADNSVEIHDDGRGIPIDKEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199 SVVNALS L V V R + F RG P + K Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYRMSFRRGEPGRFKDVGSKTDPAAAFTPFVDDSVLDIVG 180 Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 R GTRI + D +IF A F L + ++L +K ++ + G Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLVPGLKLTVRDERRVPGTAG 240 Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298 P +E F+ GG+ ++ + + G + K T Sbjct: 241 EAGPHEEVFHHDGGISEFVDFLAADPPVTDVWRLHGSGKFKETVPVLDERGHSQLAEVER 300 Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W + S+ N I T +GGTH+SG AL + +K E K Sbjct: 301 DCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGN 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I DD+ +L+V + EP+F GQTK L + + + VE + + Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVAKVVEREIVAKLNSANRN 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + ++ LLE ++ + R+ R +E RK A+ +P KLADC + +ELFIV Sbjct: 421 DKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVERSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK AR+ QA+LP+RGKILNV A + +N + L+Q +G + + Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 RY KVI+MTDADVDGAHI +LLLT F++ M +IE+ +F PPL R+ Sbjct: 541 ISAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVEVVNAGQ 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E +L K GK K I R+KGLGEM A QL ET MD R L + Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRMLRK 660 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V I L++ + + + LMG+ R FI A+ +D Sbjct: 661 VGI----AELEEAEKTFDLLMGSDVSPRKDFIIAGAASLD 696 >gi|192360165|ref|YP_001983359.1| DNA topoisomerase IV subunit B [Cellvibrio japonicus Ueda107] gi|190686330|gb|ACE84008.1| DNA topoisomerase IV, B subunit [Cellvibrio japonicus Ueda107] Length = 629 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 247/645 (38%), Positives = 362/645 (56%), Gaps = 26/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I +L GL+PV+ RPGMY T+ +HL E+IDN++DE +AG+A IEV L Sbjct: 3 NYSAEDIEVLTGLDPVKKRPGMY---TETTRPNHLAQEIIDNSVDEALAGHAKSIEVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV+ HP+ K +E+IL TLHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 60 KDNSVTVADDGRGMPVDIHPEQ-GKPGVEVILCTLHAGGKFSNKNYQFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS++L VT+ R ++ F+ G + L+ + + + GT + F P+P ++ D Sbjct: 119 NALSEQLEVTIKRDGNVYRMGFANGDKATDLDIIDTCPKRQTGTSVRFLPNP-VYFDSPK 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F R+ + ++KA L + + + EK+ +Y+ GLK YL + Sbjct: 178 FSVTRMRHVLRAKAVLCPGLTVSFLDE-------ATGEKDVWYYEDGLKDYLAGATQEWI 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + + F G + + + WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 SLPEQPFVGDFKAETE---AISWAVQWLPEGGELVQESYVNLIPTAQGGTHVNGLRTGLM 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++ Y E R I + +DL + +LS +P+F+GQTK +L S +A V Sbjct: 288 DAMRDYCEFRNLIPRGIKLAPEDLWNNCCFVLSYKHYDPQFSGQTKERLTSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +D F +L Q+ E KL E+ I +++R+R ++V RK + LPGKLADCS Sbjct: 348 IAKDAFALWLNQHTEEGDKLAEFCISNAQKRVR--SGKKVARKKVTQGPALPGKLADCSS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ Sbjct: 406 GDTSRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSAEILASQEVHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S+ +LRY K+ I+ DAD DG HIA+LL F + L+ H+F+ PP Sbjct: 466 AIGMDPGSEDL-SELRYNKICILADADSDGLHIATLLCALFVKHFPVLVRNGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE K IL K GK+ + RFKGLGEM QL+ET M + Sbjct: 525 LYRIDIGKDVYYALDESEKNGILNRIAAENKRGKVNVQRFKGLGEMNPLQLRETTMAPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I +L+ L +A++R +++E+ + + Sbjct: 585 RRLVQLTIEDVDGTLQIMDM---MLAKKRANDRKTWLEEKGNLAE 626 >gi|59712835|ref|YP_205611.1| DNA topoisomerase IV subunit B [Vibrio fischeri ES114] gi|59480936|gb|AAW86723.1| DNA topoisomerase IV, subunit B [Vibrio fischeri ES114] Length = 626 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAKKVEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP S +E+IL LHAGGKF YE SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G +S L R RGT + F PD F Sbjct: 118 VVNALSKRVEVTVRRDGQVYEIAFENGDKVSDLTVTGTCGRRNRGTSVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL+ ++KA L ++ + E + + GLK YL + Sbjct: 178 -KFSVTRLINNLKAKAVLCPGLEIVFKDKVNDKEHN-------WCYEDGLKDYLLEGVTG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 +L+ FTG G +WA+ W E E SY N I T +GGTH +G+R Sbjct: 230 FTLLPEIPFTGAFSGTGE---AADWAVTWLPEGGELVAESYVNLIPTAQGGTHVNGMRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEFRNLVPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L + P A +L E I + R+R ++V RK LPGKL DC Sbjct: 347 SGVVKDAFSLWLNEKPQIAEQLAEACIANAHRRMR--AAKKVVRKKIASGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ D+ Sbjct: 405 SVQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+LL + + L++ H+++ Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFKALVQAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DEE K+ +L+ + + KI + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDCGKEVFYALDEEEKEGVLDRLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + T + ++ L+G K AD+R ++Q + Sbjct: 583 TRRLVQLTIDDD----EQTDEMMDMLLGKKRADDRRSWLQSNGDQAE 625 >gi|123443845|ref|YP_001007816.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090806|emb|CAL13688.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 631 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 247/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAHRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQELQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEVPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +L++ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLDQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGD--EDIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|256823223|ref|YP_003147186.1| DNA topoisomerase IV subunit B [Kangiella koreensis DSM 16069] gi|256796762|gb|ACV27418.1| DNA topoisomerase IV, B subunit [Kangiella koreensis DSM 16069] Length = 629 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 364/648 (56%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A++ Y A SI +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 ANNQYTAESIEVLSGLDPVKKRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKTIKV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L + L V D+GRG+PV+ HP+ +E+I++ LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 TLHKDSSLEVEDDGRGMPVDIHPE-EGIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + F G + LE +V + GT + F PD K F Sbjct: 118 SVVNALSKRVEVTVKRDGNQYFMAFEDGFKVKDLEVVAEVGKRNTGTSVKFWPDSKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L +K + + E++E+ + GL YL + Sbjct: 178 D-KFSISRLKHLLKAKAILCPGLKVVF-------DNKAAGEQDEWLYEDGLTAYLLEQAG 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + E FTG + + V+WA W E E SY N I T +GGTH +GLR Sbjct: 230 GFERLPEEPFTGSLQGEAE---AVDWAFMWLPEGGECLAESYVNLIPTPQGGTHVNGLRN 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + ++D+ +LSV + +P+F+GQTK +L S Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLSAEDVWDRISYVLSVKLDDPQFSGQTKERLSSRQCATF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QNP+ L E I + +R+R +++ RK + LPGKLAD Sbjct: 347 VAGVVKDAFSLWLNQNPVIGDALAERAISNAHKRMR--ASKKIVRKKVTQGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ A +ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN S +I +Q++ D Sbjct: 405 CAGTDAMSSELFLVEGDSAGGSAKQARDKEYQAIMPLRGKILNTWEVDSNQILASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY KV I+ DAD DG HIA+LL F + L+ H+F+ Sbjct: 465 ISVAIGLDPSSDDL-SKLRYGKVCILADADSDGLHIATLLCALFVRHFRPLVRAGHVFVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE+ KQ +L+ K K GKI++ RFKGLGEM QL+ET M Sbjct: 524 MPPLYRIDVGKEVFYALDEDEKQGLLDRIKAENKRGKIQVQRFKGLGEMNPKQLRETTMA 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ + D + ++K +A +R ++++ + + + Sbjct: 584 RETRRLVQLTLGGDGEAEHIMDMLLSK---KRASDRKEWLELKGNKAE 628 >gi|238796970|ref|ZP_04640474.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969] gi|238719230|gb|EEQ11042.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969] Length = 631 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 360/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL ++ Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEKAFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I D + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTIGDD--DIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|120600194|ref|YP_964768.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1] gi|146291878|ref|YP_001182302.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32] gi|120560287|gb|ABM26214.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1] gi|145563568|gb|ABP74503.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32] gi|319425113|gb|ADV53187.1| DNA topoisomerase IV, B subunit [Shewanella putrefaciens 200] Length = 628 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 246/645 (38%), Positives = 356/645 (55%), Gaps = 24/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHLDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L+ R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFEHGFKVEELKVTGTCGRRNTGTRVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+++ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ E F G + K SY N I T GGTH +G R L Sbjct: 230 NVMLPEEPFVGSFKGK-IEAADWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ A ILSV +++P+FAGQTK KL S V Sbjct: 289 ESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQCSAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +RD F +L N A L E I ++ RL+ K +V RK LPGKL DCS Sbjct: 349 IVRDAFSLWLNSNTELAESLAELCINNAQRRLKAAK--KVARKKVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+GC +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 467 AIGCDPDCNDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE K+ IL+ ++ KGK++++RFKGLGEM QL+ET MD N Sbjct: 526 LFRIDIGKDVYYALDEAEKEGILDRISAENKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 R L+++ I+ +++T ++ L+ K + +R +++++ Sbjct: 586 RRLVQLTIDD----VEETDSLMDMLLAKKRSPDRKSWLEDKGDMA 626 >gi|153873771|ref|ZP_02002242.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS] gi|152069763|gb|EDN67758.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS] Length = 632 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 261/650 (40%), Positives = 375/650 (57%), Gaps = 27/650 (4%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A N A+ +YDA+ I +L GLEPVR RPGMY TD +HL EV+DN++DE IAGY Sbjct: 2 ARKNYDAAKSYDAADIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVVDNSVDEAIAGY 58 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 AN I+V L +G L+V DNGRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGG Sbjct: 59 ANQIDVVLHADGSLSVRDNGRGMPVDKHPE-EGISGVEVILTRLHAGGKFSNKNYQFSGG 117 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPD 212 LHGVG+SVVNALS L V + R + ++ F+ G S L V + GT + F + Sbjct: 118 LHGVGVSVVNALSSHLEVNIKRDSQLYQMSFADGEKTSELRVIGNVGKRNTGTMLRFWAN 177 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 PK F F RL+ + ++KA L ++ + + EK ++Y+ GL TY Sbjct: 178 PKYFDSPR-FLVPRLMHVLRAKAVLCAGLRLTFEDE-------NTGEKFQWYYKDGLTTY 229 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 L L + + E F G E V++A+ W E SY N I T +GGTH Sbjct: 230 LLDNLGDVDSLPEEPFVGHFEG---TTEAVDYALMWLSEGELLTESYVNLIPTTQGGTHV 286 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ + R + + +D+ ILSV + EP+F+GQTK +L S Sbjct: 287 NGLRSGLLDAMREFCDYRNLLPRGVKLAPEDVWERCTYILSVKLEEPQFSGQTKERLSSR 346 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 V +RD F +L Q+ K+ E VI +++RLR ++V RK A LP Sbjct: 347 ACATFVSGVVRDAFSLWLNQHVEIGEKIAELVISHAQKRLRAD--KKVVRKKATNGPTLP 404 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADCS TELF+VEGDSAGGS +QAR+R+ QA++PLRGKILN + ++ + Sbjct: 405 GKLADCSLQDVSRTELFLVEGDSAGGSCRQARDRTFQAIMPLRGKILNTWEVDTSQVLAS 464 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ D+ ALG E+LRY KV I+ DAD DGAHIA+LL F + L+EQ Sbjct: 465 QEVHDIAVALGIDPGIDNL-EELRYGKVCILADADSDGAHIATLLCALFVKHFPTLVEQG 523 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLK 629 H+++ +PPL+RI G YA +++ KQ IL+ K + + RFKGLGEM QL+ Sbjct: 524 HIYIATPPLYRIDVGNTVYYALNDDEKQGILDRIAAEKKRGTVNVQRFKGLGEMNPLQLR 583 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERA 678 ET M + R L+++ +N+ +++T++ +N L+ K A +R +++ +A Sbjct: 584 ETTMSPDTRRLIQLTLNE----VEETENMMNMLLSKKRAHDRKVWLEIKA 629 >gi|255073667|ref|XP_002500508.1| predicted protein [Micromonas sp. RCC299] gi|226515771|gb|ACO61766.1| predicted protein [Micromonas sp. RCC299] Length = 703 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 255/686 (37%), Positives = 371/686 (54%), Gaps = 24/686 (3%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 + ++ + + + A A SD Y ASSI++L+GLEPVR RPGMYIG T K L Sbjct: 26 APRDNTGDIIAAKAAAKAAAAAATGGSDAYGASSIQVLKGLEPVRKRPGMYIGNTSTKGL 85 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIIL 134 HH+ EV+DN +DEV AG+A+LI V+++ +G + V D+GRGIP + HP S+LE +L Sbjct: 86 HHMVWEVLDNGVDEVQAGHASLITVTVEADGSVAVEDDGRGIPTDVHP-ATGTSSLETVL 144 Query: 135 TTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192 T LHAGGKF Y +SGGLHGVGISVVNALSD VTV R + + Q FSRG L+P Sbjct: 145 TVLHAGGKFGGDESGYHVSGGLHGVGISVVNALSDSTEVTVWRGDREYRQSFSRGAALAP 204 Query: 193 LEKKE----KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 + + V K+GTR+ F+PDP IF ++ FD +L + A+L+ S D Sbjct: 205 MTEGSQDVANVGKKKGTRVRFKPDPSIFKERQDFDPNIILARMKELAFLNSTATDEASMD 264 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + +K +E FPGGLK Y+ E + T + E G Sbjct: 265 EGDVKKTEEYYEEVLSFPGGLKDYVVDLNEGAEPLHEP-ITFRAEVDGVQVEGA-LQWTK 322 Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISA 366 + Y N+I T +GGTH GL+ +LTR + A + + ++ + + Sbjct: 323 EAYTDTLLGYANSIRTSDGGTHLDGLKQSLTRAVNTQARKAKLLKEADANLGGEHIREGL 382 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 +++V++ +PEF GQTKT+L + + ++ VE+ + + +L P + + Sbjct: 383 SAVIAVWVPQPEFEGQTKTRLGNPEVRKVVESVIGEQVSEHLEFYPNTLGSIFSKASQAQ 442 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 + ++ RE V RK+ +R LPGKL+DCS + TE+F+VEGDSAGGSAKQ R+R Sbjct: 443 KAAEAAKRARELVRRKSVLRSGSLPGKLSDCSVSDPESTEIFLVEGDSAGGSAKQGRDRR 502 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDA 544 QAVLPLRGKILNV + N +I +V ALG + + +E LRY K++I+TDA Sbjct: 503 FQAVLPLRGKILNVERKDEASMYKNTEISSMVTALGLGLKGEPFDESQLRYSKIVILTDA 562 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QGTKSVYAHDEEHKQK 599 DVDGAHI +LLLTF ++ L EQ +++ PPL+++ + Y +DE Q Sbjct: 563 DVDGAHIRTLLLTFLFRYQRGLFEQGKVYVAVPPLYKVESGRAGKNNPPTYCYDEAQLQA 622 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L + I RFKGLGEM+ QL T ++ R L R+ ++ + Sbjct: 623 HLATLPEGASR--SIQRFKGLGEMMPEQLWSTTLNPETRLLKRLTVDD----AAMANKTF 676 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LM K R +FI+ ++D+ Sbjct: 677 QLLMSDKVAPRREFIETEGPKLEDID 702 >gi|162452728|ref|YP_001615095.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] gi|161163310|emb|CAN94615.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] Length = 645 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 262/658 (39%), Positives = 381/658 (57%), Gaps = 24/658 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + ++ Y A+ I +LEGLEPVR RP MYIGGTD + HHL E++DNA+DE I Sbjct: 3 ATNSPVRAASGARYTAADIEVLEGLEPVRKRPAMYIGGTDARGYHHLLWEIVDNAVDEAI 62 Query: 91 AGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 G+A IEV+LD + TV D+GRGIPV+ HP++ + LE+I TLHAGGKF + Y+ Sbjct: 63 NGHAKRIEVTLDADLQGATVTDDGRGIPVDVHPRY-KRPALELIFCTLHAGGKFASDNYK 121 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG SVVNALS+ + V V R + Q FSRG P S L+K K GT I F Sbjct: 122 VSGGLHGVGSSVVNALSELVEVRVLRDGSEHQQTFSRGAPTSKLKK-GAPTRKHGTTIHF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 RPDP+IFG FD + + ++KAYL G ++ + E E P G+ Sbjct: 181 RPDPEIFGQGRRFDPETIRERLEAKAYLHGGLEIAFRD-------LSSGESIELLHPNGI 233 Query: 270 KTYLQT--KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327 +L + + IF E + ++W + + + SY N I T G Sbjct: 234 ADFLPKLVAQRGKPVTHPSIFYVAREGEIRLEAALQWTES---TDEYVKSYVNGIPTHAG 290 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 G HESG A+ + ++ + + + + +++ +DD+ VG+LS++I++P+F GQTK + Sbjct: 291 GAHESGFSGAIVKAVRAFMDAKKVQPKGVTLTADDIREGIVGVLSIYIQDPQFQGQTKDR 350 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR--KQREVNRKTAI 444 L + +A VE +R + +++ N ++ I + R RR Q+ + + Sbjct: 351 LNNAEAGPAVEGMVRPALEQWMLHNGTAGESIVARAILAARAREARREATQQVLRKTPVS 410 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 +L LPGKLADC+ +ELFIVEGDSAGGSAKQ R+R QA+LPLRGK+LN A + Sbjct: 411 HRLNLPGKLADCASTDPSESELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQAST 470 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ N+++ D+V ALGC + LRY ++ ++ DAD DG HIA+LLLTFFY+ + Sbjct: 471 SKVLGNKELQDIVSALGCGFGKDFDASKLRYGRIFLLMDADSDGQHIATLLLTFFYRHLP 530 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 L+ H+FL PPL+RI G ++ +A D+ + ++L + K K +ISRFKGLGEM Sbjct: 531 GLLRGGHVFLAQPPLYRIDVGKETHWALDDAERDRVLAKLPKTAKA--DISRFKGLGEMP 588 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A LK T +D +R LR+ I ++ +T +N+LMG A RF+FI ERA + Sbjct: 589 AEDLKATTLDIRRRRALRIVIEGEI----ETDRILNELMGKDAQARFRFIMERAPNAE 642 >gi|229829024|ref|ZP_04455093.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM 14600] gi|229792187|gb|EEP28301.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM 14600] Length = 640 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 241/660 (36%), Positives = 344/660 (52%), Gaps = 35/660 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +YD SSI +LEGL+ VRMRPGMYIG T K L+HL E++DN++DE +AG + I Sbjct: 2 AKKKSYDESSIHVLEGLDAVRMRPGMYIGSTSTKGLNHLIYEIVDNSVDEHLAGDCDTIH 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 VSL+ +G TV D+GRGIPV H K S ++ +TLHAGGKFDN Y+ SGGLHGVG Sbjct: 62 VSLNLDGSCTVEDDGRGIPVGMHAK--GVSAARLVFSTLHAGGKFDNEAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP-----LEKKEKVRNKRGTRITFRPDP 213 SVVNALS + + + R I ++ G P L K + GT+ITF PDP Sbjct: 120 SSVVNALSSYMDIEIRRDGEIHHDHYAMGKPTEKLVNGLLPVIGKTKE-TGTKITFLPDP 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F + AYL+ R+ + + E F+ G++ ++ Sbjct: 179 QIFEK-TRFSEKDVKSRLHETAYLNPRLTIIYDDLR-----QETAEHLVFHEKEGIRGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHES 332 + + ++ I+ K E +G VE A + E + I +CN I EGG H + Sbjct: 233 RELNKKAEGLTDVIYY-KGEFEGIQ---VEAAFQYVNEFHENILGFCNNIYNAEGGEHIT 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + T I YA + + D+ ++S+ +P F GQTKTKL + Sbjct: 289 GFKTQFTTVINSYARELGILKDKDANFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNK 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + D Y +N ++ + ++ R + + Sbjct: 349 DASKATAKVTGDEIVLYFDRNLETLKTVISCAEKAAKIRRTEERTKTNLLTKQKFSFDQN 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA+C A E+FIVEGDSAGGSAK ARNR QA++P+RGKILNV A +K+ N Sbjct: 409 GKLANCESRDASKCEIFIVEGDSAGGSAKMARNRLYQAIMPIRGKILNVEKASIDKVLAN 468 Query: 511 QQIMDLVQALGCRTR----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 +I ++ A GC + + + LRY+K+I+MTDADVDGAHI +LLLT FY+ M +L Sbjct: 469 AEIKTMINAFGCGFSEGFGNDFDIKKLRYDKIIVMTDADVDGAHIDTLLLTLFYRFMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 I + H++L PPL++ + Y +D+ LE+++K G + R+KGLGEM A Sbjct: 529 IYEGHVYLAMPPLYKAMPAKGEEEYLYDDA----ALEKYRKRQTGSFTLQRYKGLGEMDA 584 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +QL ET M+ R L RV I + T+ LMG + R FI E A+ D + Sbjct: 585 AQLYETTMNPKTRRLRRVGIEDGRMASDVTE----MLMGNEVGPRRDFIYENANDAD-LD 639 >gi|157373918|ref|YP_001472518.1| DNA topoisomerase IV subunit B [Shewanella sediminis HAW-EB3] gi|157316292|gb|ABV35390.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 628 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 243/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHKDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + +TV R ++ F G + L + R GTR+ F P P F Sbjct: 118 VVNALSSRVEITVRRNGIVYDMAFEHGHKVEDLVETGTCGRRNSGTRVHFWPTPSYFD-F 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L +K + E E+Y+ GL YL + +++ Sbjct: 177 ENFSISKLVYLLKAKAVLCPGLKIKFVNK-------QTDEVLEWYYESGLTDYLTSSIKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 ++ E F G + V+WAI W E + SY N I T GGTH +G R Sbjct: 230 ALMLPEEPFVGSLKGN---LEAVDWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ + ILSV +++P+F+GQTK KL S + V Sbjct: 287 LLDSMREFCEFRNLIPRGIKLTPEDIWDRSSFILSVKMQDPQFSGQTKEKLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L + +A L E I +++RL+ ++V RK LPGKL DC Sbjct: 347 SGIVRDAFSLWLNTHTEQAEALAEMCINNAQKRLK--SAKKVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC +LRY K+ I+ DAD DG HIA+LL F + L+E H+++ Sbjct: 465 SVAIGCDPDCDNI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEHGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFR+ G + YA DE K+ IL+ + KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRVDVGKEVFYALDEAEKEGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 N R L+++ ++ ++ L ++ +R +++ + D Sbjct: 584 NTRRLVQLTVDDAEATIALMDML---LAKKRSGDRKTWLETKGDLAD 627 >gi|242241013|ref|YP_002989194.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech703] gi|242133070|gb|ACS87372.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech703] Length = 631 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 367/649 (56%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F +G + L R GTR+ F P+ + F D Sbjct: 120 VNALSRRVEVTVRRDGQVYDIAFEQGAKVQDLTITGTCGRRNTGTRVRFWPE-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEILFVDKVNETE-------QRWCYQDGLNDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG VEWA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PTLPEKPFTGTISGDTE---AVEWALLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLGKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L+ H+++ P Sbjct: 467 VAIGIDPDSDDL-TQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVRDGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I++ ++ T +++ L+ K +++R ++QE+ + + Sbjct: 585 RRLVQLTISE--EDVEQTLATMDMLLAKKRSEDRRNWLQEKGDRAE-LD 630 >gi|269103508|ref|ZP_06156205.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163406|gb|EEZ41902.1| topoisomerase IV subunit B [Photobacterium damselae subsp. damselae CIP 102761] Length = 627 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 261/646 (40%), Positives = 367/646 (56%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 QSYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARKVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L VVD+GRG+PV+ HP+ S +E+IL LHAGGKF Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+ + VTV R I+ F G +S LE R +GTR+ F PD K F Sbjct: 120 VNALSNRVEVTVKRDGQIYQIAFEHGNKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L ++ ++ E + + GLK YL ++ Sbjct: 179 KFSVSRLRNNLKAKAVLCPGLEIVFTDK-------VNGENYRWCYEDGLKDYLAEGVKGF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 +L+ E FTG +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 TLLPEEPFTGSFSG---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L + P A +L E I + R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKITSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q++ D+ Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY K+ ++ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFKALVRAGHVFIAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K ILE +GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLYRIDLGKEVHYALDEAEKNVILERLSGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + T + ++ L+G K A++R ++QE+ + Sbjct: 585 RRLVQLTIDDD----EQTNEMMDMLLGKKRAEDRRHWLQEKGDMAE 626 >gi|317493396|ref|ZP_07951817.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918339|gb|EFV39677.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA] Length = 631 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 362/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ +EV L Sbjct: 4 SSYNADSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YPDQSLEVIDDGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L + GT + F PD + F D Sbjct: 120 VNALSKRVEVTVRRDGQVYQMAFENGDKVEDLHVTGTCGKRNTGTSVHFWPD-EQFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 KFSVSRLNHLLKAKAVLCPGVEIVFKDKLNNTE-------QRWCYQDGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ITLPEQAFTGSFSGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 AIVKDAFSVWLNQNVQVAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLSRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L+ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFQSLVRGGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLFRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ + T ++ L+ K +++R ++QE+ D + Sbjct: 585 RRLVQLTIDDT--DVDQTMAVMDMLLAKKRSEDRRNWLQEKGDLAD-LD 630 >gi|308177804|ref|YP_003917210.1| putative DNA gyrase subunit B [Arthrobacter arilaitensis Re117] gi|307745267|emb|CBT76239.1| putative DNA gyrase subunit B [Arthrobacter arilaitensis Re117] Length = 702 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 240/700 (34%), Positives = 346/700 (49%), Gaps = 61/700 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++SDNY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ I+ Sbjct: 2 ASSDNYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFGQAID 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V D+GRGIPV+ PK S LE++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 VILHSDGSVEVQDDGRGIPVDLEPK-TGLSGLEVVFTKLHAGGKFGGGSYSASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN----------------- 201 SVVNALS L V V R + +F RG P +K K + Sbjct: 121 ASVVNALSARLDVEVDRGGKTYGLQFRRGEPGKFTDKGRKKADAPFKAHVTATPPGIIGK 180 Query: 202 ----KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255 GTRI + D IF +A F + L + ++L ++ ++ + + Sbjct: 181 AKRGVTGTRIRYWADNHIFTPEAKFSYSDLQDRARQTSFLVPGLRITLRDERGLPDTPGA 240 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299 P +E F GG+ ++ + + F G + Sbjct: 241 EGPHEEVFQHDGGISEFVDYLSSDSPVTDIWRFQGSGSFHEKVPVIDGNGRSHIEDVQRV 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----RA 354 V+ A+ W S+ N I T +GGTH +G A+ + +K E K + Sbjct: 301 CEVDVALRWGIGYETSLRSFVNIIATPKGGTHTAGFEQAMLKSFRKNVEANARKLKFGQK 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 + DD++ +L+V + EP+F GQTK L + ++ V L + L N Sbjct: 361 DKLEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTPQVRQIVSKVLEKALNERLGSNKRN 420 Query: 415 ATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 +E V+ + R+ R +E RKTA+ LP KL DC +ELFIV Sbjct: 421 EKAEASTLMEKVVNEMKSRVSARMHKETQRRKTALESSSLPTKLLDCRSKEVGKSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+A+ AR+ +QA+LP+RGKILNV A + +N + ++Q +G + + Sbjct: 481 EGDSALGTARLARSSEHQALLPIRGKILNVQKASISDMLSNAECAAMIQVIGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 E RY K+I+MTDADVDGAHI +LLLT FY+ M +IE ++ PPL RI + Sbjct: 541 IEQARYGKIILMTDADVDGAHIRTLLLTLFYRYMRPMIEHGRVYAAVPPLHRIEVINAGS 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E K+L +K G+ K I R+KGLGEM A QL ET MD R L R Sbjct: 601 KQNEVIYTYSEAEMTKLLATLEKEGRRYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRR 660 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V I + ++ + LMG+ R KFI + A ++ Sbjct: 661 VGIEH----AQAAEEVFDLLMGSDVAPRKKFIIDGADDLE 696 >gi|292492462|ref|YP_003527901.1| DNA topoisomerase IV subunit beta [Nitrosococcus halophilus Nc4] gi|291581057|gb|ADE15514.1| DNA topoisomerase IV, B subunit [Nitrosococcus halophilus Nc4] Length = 628 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 254/647 (39%), Positives = 365/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S NY+A++I +L GLEPVR RPGMY TD + +HL EVIDN++DE IAG+A IEV Sbjct: 2 SGNYNAAAIEVLTGLEPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATQIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G L+V D+GRG+PV+ HP+ +E+ILT LHAGGKF + +Y +GGLHGVG+S Sbjct: 59 LHPDGSLSVGDDGRGMPVDLHPE-EQLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V + R + F+ G +S L KV + GT + F PDP +F D Sbjct: 118 VVNALSSRLEVWIRRNGCEYHMAFANGERISALRAVNKVGKRNTGTLLHFWPDP-VFFDT 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ARL + ++KA L + + + E + + GL YL+ +L Sbjct: 177 PKFSVARLKHVLRAKAVLCPGLNVIFR-------EAATGETVNWCYQEGLLAYLRDELGE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + + FTG+ + V WA+AW E E+ SY N I T +GGTH +GLR Sbjct: 230 TPRLPEQPFTGEMQGNTE---EVCWALAWLPEGGEVVAESYVNLIPTPQGGTHVNGLRAG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L I+++ E R + + DD+ +LSV + +P+F+GQTK +L S + V Sbjct: 287 LLEAIREFCEFRNLLPRGVKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ I + E I ++ RLR + + V RK LPGKLADC Sbjct: 347 SGVIKDAFSLWLNQHVITGEAIAELAISNAQRRLR--QAKRVVRKRIQTGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQ R+R QA++PLRGKILN ++ +Q++ ++ Sbjct: 405 TSQDVSLTELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEVDPAQVLGSQEVHNV 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S + LRY K+ I+ DAD DGAHIA+LL F + L+E H+++ Sbjct: 465 AIAVGVDPGSDNL-DGLRYGKICILADADSDGAHIATLLSALFLRHFRPLVEAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G YA DE +Q IL+ +GKI I RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKHVFYALDEAERQGILDRIAAEKIRGKINIQRFKGLGEMNPMQLRETTMAP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+R+ + ++ + ++K +A +R ++++ER + + Sbjct: 584 ETRRLVRLTVAPHDDTDQLLDRLLSK---RRAADRRQWLEERGNLAE 627 >gi|160892781|ref|ZP_02073571.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50] gi|156865822|gb|EDO59253.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50] Length = 634 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 238/652 (36%), Positives = 349/652 (53%), Gaps = 36/652 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I +L+GLEPVR+RPGMYIG T L+HL E+IDN++DE +AGY I VS++ Sbjct: 2 SYSAKNIEVLKGLEPVRLRPGMYIGNTGRSGLNHLIQELIDNSVDEHLAGYCKNIYVSIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV D+GRG+PV+ H + ++ T LHAGGKF++STY+ISGGLHGVG +VV Sbjct: 62 EDGSATVSDDGRGVPVDIH-ETEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK------VRNKRGTRITFRPDPKIF 216 NALS +L V VAR +++ + G+P++ L + + GT++T PD IF Sbjct: 121 NALSKKLLVEVARDGYLYTDSYEYGVPVTELTPEGNLPRTRLKEKRTGTKVTLYPDDTIF 180 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F A +++ + AYL+ + + ++ E F+ PGGL +++ Sbjct: 181 ET-VKFKADAIMQRIKETAYLNPELTITFHNKRDGKE------PVVFHQPGGLSAFVEDI 233 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336 E + S EK+ V + I + N I EGGTH +G + Sbjct: 234 SEGLTHTSPI-IAISGEKENITADIVFVMT--EDGEENIIGFTNNITNPEGGTHVTGFKS 290 Query: 337 ALTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 + I YA ++ ++ D+ I+SV +P+F GQTKTKL + D Sbjct: 291 GFAKLINSYARNELGLLKEKDANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVT 350 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + V++ +++ Y +N + + + S+++ + GKL Sbjct: 351 KAVDDIVKEQLTVYFDRNYDVLKDICDRAVSLSKKKAL----EKSKINLNKFSFEGNGKL 406 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A N + E+FIVEGDSAGGSAK ARNR QA+LPLRGKILNV K+ N +I Sbjct: 407 AKQESNDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEI 466 Query: 514 MDLVQALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 L+ A GC + L Y+K+IIMTDADVDGAHIA+LLLTFFY+ DLI + Sbjct: 467 KALINAFGCGFMQGYGNDFDINKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLINE 526 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+R+ +G Y + +E + +K GK I R+KGLGEM A QL Sbjct: 527 GHIYIAIPPLYRVGEGKHMQYLYSDEELNRY----RKKHTGKFTIQRYKGLGEMDADQLY 582 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 ET M+ R L +V IN + + K TQ LMGT+ R ++I+ ++ Sbjct: 583 ETTMNPESRVLKQVSINSIVEANKLTQ----TLMGTEVAPRREYIETHSTDA 630 >gi|87119648|ref|ZP_01075545.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121] gi|86165124|gb|EAQ66392.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121] Length = 632 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 241/647 (37%), Positives = 358/647 (55%), Gaps = 24/647 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++ Y+A SI +L GLEPV+ RPGMY TD +HL EVIDN++DE +A +A+ +EV Sbjct: 2 SANQYNADSIEVLSGLEPVQKRPGMY---TDTSRPNHLAQEVIDNSVDEALAKHADKVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G L+V DNGRG+PV+ HP+ S +E+ILT LHAGGKF Y+ SGGLHGVG+ Sbjct: 59 TLHKDGSLSVEDNGRGMPVDIHPE-EGISGVELILTKLHAGGKFSGDNYQFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS +L V V R F F+ G+ L + + GT+++F+ DPK F Sbjct: 118 SVVNALSTQLDVWVKRDGKQFHIAFADGLKTQDLTEIGTCGKKNTGTKVSFKADPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 RL + ++KA L + + E KEE++F GLK YL Sbjct: 178 A-KISVTRLKHLLKAKAVLCSGLHMIFID-----ESGAETVKEEWFFQDGLKDYLAQANA 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 L+ F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 232 GFELLPESPFVGGM---TEVTQGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRT 288 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L I+++ + R + + ++D+ +LS ++EP+F+GQTK +L S Sbjct: 289 GLLEAIREFCDFRNLLPRGVKLTAEDVWERCSYVLSAKLQEPQFSGQTKERLSSRQIVAF 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F +L ++ + K+ + VI +++R+R ++V RK + LPGKLAD Sbjct: 349 ISATVKDAFSLWLNKHVEDGQKIADIVISSAQKRMR--ASKKVVRKKITQGPALPGKLAD 406 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ +ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN S ++ +Q+I D Sbjct: 407 CAGQDTVRSELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNSWEVDSSEVLASQEIHD 466 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + LRY K+ I+ DAD DG HIA+LL F + L++ H+F+ Sbjct: 467 ISVALGVDPADEDL-SQLRYGKLCILADADSDGLHIATLLCALFVRHFPALVKAGHIFVA 525 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634 PPL+RI + YA D+E K IL + K + RFKGLGEM SQL+ET M Sbjct: 526 MPPLYRIDVAKEVHYALDDEEKDIILHKLAAEHKRSTPNVQRFKGLGEMNPSQLRETTMA 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 + R L+++ + + + ++K +A +R +++ + Sbjct: 586 PDTRRLIQLTMEDADTTGEALDRLLSK---KRAGDRKIWLETYGNLA 629 >gi|163814200|ref|ZP_02205592.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759] gi|158450649|gb|EDP27644.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759] Length = 647 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 240/651 (36%), Positives = 353/651 (54%), Gaps = 35/651 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I +L+GLEPVR+RPGMYIG T L+HL E+IDN++DE +AGY N I VS++ Sbjct: 16 SYSAKNIEVLKGLEPVRLRPGMYIGNTGRSGLNHLIQELIDNSVDEHLAGYCNNIWVSIN 75 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G TV D+GRG+PV+ H + ++ T LHAGGKF++STY+ISGGLHGVG +VV Sbjct: 76 EDGSATVSDDGRGVPVDLHEQ-EGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 134 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLS-----PLEKKEKVRNKRGTRITFRPDPKIFG 217 NALS++L V VAR ++ + +GIP + L K + + GT +T PD IF Sbjct: 135 NALSNKLIVDVARDGYLYHDTYEKGIPTTELVDGMLPKTKLKEKRTGTTVTLYPDDTIFE 194 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F A + + + AYL+ + + ++ E F+ PGGL +++ Sbjct: 195 T-VKFKADAIKQRIKETAYLNPNLTITFQNKRDGEE------PIVFHQPGGLSAFVEDIS 247 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 + + S EK G V + I + N I EGGTH +G + A Sbjct: 248 QGLTHTSPV-VAISGEKDGIAADIVFLMT--DDGEENIIGFTNNITNPEGGTHVTGFKSA 304 Query: 338 LTRGIKKYAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 + I YA ++ ++ D+ I+SV +P+F GQTKTKL + D + Sbjct: 305 FAKLINNYARNELGVLKEKDSNLTGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVSK 364 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V++ +++ Y +N +++ + +R K + K + GKLA Sbjct: 365 AVDDIVKEQLTVYFDRNYDVLKDIVDRAV-ALSKRKALEKSKININKFSFEG---NGKLA 420 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 + + E+FIVEGDSAGGSAK ARNR QA+LPLRGKILNV K+ N +I Sbjct: 421 KQESSDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKPVAKVLENAEIK 480 Query: 515 DLVQALGCRTRS----QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 L+ A GC + L Y+K+IIMTDADVDGAHIA+LLLTFFY+ DLI + Sbjct: 481 ALINAFGCGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLISEG 540 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 H+++ PPL+R+ +G Y + ++ L +++K K I R+KGLGEM A QL E Sbjct: 541 HIYIAIPPLYRVGEGKNIKYLYSDDE----LAKYRKTHTSKFTIQRYKGLGEMDADQLYE 596 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 T M+ R L +V +N + + + TQ LMGT+ R ++I+ ++ Sbjct: 597 TTMNPETRLLKQVSVNSRIEANQLTQ----TLMGTEVAPRREYIETHSADA 643 >gi|116670180|ref|YP_831113.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24] gi|116610289|gb|ABK03013.1| DNA topoisomerase IV subunit B [Arthrobacter sp. FB24] Length = 702 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 240/700 (34%), Positives = 347/700 (49%), Gaps = 61/700 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S +Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ + I+ Sbjct: 2 APSSDYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGHDIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L + + + D+GRGIP++ PK + +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 IILHADNSVEIHDDGRGIPIDVEPK-TGLTGVEVVFTKLHAGGKFGGGSYTASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------- 199 SVVNALS L V V R + F RG P + K Sbjct: 121 ASVVNALSSRLDVEVDRGGKTYKMSFRRGEPGRFKDPGTKPDPAAAFEPFVNDSVLDVVG 180 Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 R GTRI + D +IF A F L + ++L +K + IA G Sbjct: 181 KAKRGVTGTRIRYWADRQIFTPDAKFSYDELAARARQTSFLIPGLKLTVRDQRRIAGTPG 240 Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298 +E F+ GG+ ++ + ++ + G + K T Sbjct: 241 ELAGHEEIFHHDGGISEFVDFLAADPAVTDTWRLHGSGKFKETVPVLDERGHSQLAEVER 300 Query: 299 RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W + S+ N I T +GGTH+SG AL + +K E K Sbjct: 301 DCEVDVALRWGIGYDSTVRSFVNIISTPKGGTHQSGFEQALVKTFRKAVETNARKLKAGN 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I DD+ +L+V + EP+F GQTK L + + R VE + + Sbjct: 361 DKIEKDDIFAGLTAVLTVRLAEPQFEGQTKEILGTSAVRAIVARVVEKEINAKLNSANRN 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + ++ LLE ++ + R+ R +E RK A+ +P KLADC + +ELFIV Sbjct: 421 DKAQSALLLEKIVSEMKSRISARVHKETQRRKNALETSSMPTKLADCRTDDVARSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK AR+ QA+LP+RGKILNV A + +N + L+Q +G + + Sbjct: 481 EGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 RY KVI+MTDADVDGAHI +LLLT F++ M +I++ +F PPL R+ Sbjct: 541 ISAARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVEVINAGQ 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E +L K GK K I R+KGLGEM A QL ET MD RTL + Sbjct: 601 KANEMIYTYSEAELHVLLARLAKEGKRYKEPIQRYKGLGEMDAEQLAETTMDPRHRTLRK 660 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V I + K +++ + LMG+ R FI A+ +D Sbjct: 661 VGIE----NAKQAEETFDLLMGSDVAPRKDFIIAGAAGLD 696 >gi|89092022|ref|ZP_01164977.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92] gi|89083757|gb|EAR62974.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92] Length = 630 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 249/647 (38%), Positives = 368/647 (56%), Gaps = 24/647 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A SI +L GL+PVR RPGMY T+ +HL EVIDN++DE +AG+A I+V Sbjct: 2 SKQYNAGSIEVLSGLDPVRRRPGMY---TETDRPNHLAQEVIDNSVDEALAGHAKQIDVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + L+V D+GRG+PV+ HP+ S +E+IL LHAGGKF+N Y SGGLHGVG+S Sbjct: 59 LNKDQSLSVTDDGRGMPVDIHPEQ-GVSGVELILCKLHAGGKFNNDNYNYSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V V R + ++ F+ G +S LE + + GT + F PDP+ F Sbjct: 118 VVNALSKLLEVQVRRDSQVYRIGFADGEKVSDLEVIDTCGKRNTGTTVRFLPDPQYFDTH 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL ++KA L +K ++ EKEE+Y+ GL YL+ + Sbjct: 178 -KFSVSRLKHNLRAKAVLCPGLKVTFTDL-----TGAKREKEEWYYEDGLVDYLKGTTQV 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS--YCNTILTDEGGTHESGLRVA 337 ++ +E F+G + + VEWA+ W E E+T Y N I T +GGTH +GLR Sbjct: 232 FEVLPAEPFSGSLQGELD---AVEWAVQWLPEGGEMTCESYVNLIPTAQGGTHVNGLRTG 288 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +DD+ +LS +++P+FAGQTK +L S + + Sbjct: 289 LLEAMREFCEFRNLLPRGVKLTADDVWDKCCYVLSAKMQDPQFAGQTKERLSSREIAAFI 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L ++ E +L E +I ++ R+R ++V RK + LPGKLADC Sbjct: 349 SGTIKDAFSLWLNRHVEEGEQLAEVIISNAQRRMRSN--KKVVRKKVTQGPALPGKLADC 406 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S A +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++ +Q+I D+ Sbjct: 407 SGGDAMQSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDPTEVLGSQEIHDI 466 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ E LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 467 SVAIGVEPASENF-EGLRYGKICILADADSDGLHIATLLCALFVRHFKPLVTAGHVYVAM 525 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI + YA D+ K I+E K K KI + RFKGLGEM QL+ET M Sbjct: 526 PPLYRIDVAKEVFYALDDAEKDGIIERIKADRKNAKIGVQRFKGLGEMNPLQLRETTMSP 585 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L+++ + + + L ++ +R ++Q + + D Sbjct: 586 DTRRLVQLTVEPGDGTNEVMDML---LAKKRSGDRKDWLQSKGNLAD 629 >gi|294634295|ref|ZP_06712836.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685] gi|291092288|gb|EFE24849.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685] Length = 631 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 252/649 (38%), Positives = 364/649 (56%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSIDEALAGHATRVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAIELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V+V R I+ F G + L V R GT + F PD + F Sbjct: 120 VNALSHRVEVSVRRDGQIYQIAFENGEKVEELHVTGTVGRRNTGTSVHFWPDAQFFDSAR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + +E + + + GL YL + Sbjct: 180 -FSVSRLSHLLKAKAVLCPGVEILFRDLVNGSE-------QRWCYQDGLTDYLMESVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG T V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPEQPFTGTF---ATESEAVDWALLWLPEGGELLTESYVNLIPTQQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAINSAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLARTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVQAGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA EE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVFYALSEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ I+ ++ T ++ L+ K +++R ++QE + + + Sbjct: 585 RRLVQLTIDD--EEMERTVAVMDMLLAKKRSEDRRNWLQENGNLAE-LD 630 >gi|209696078|ref|YP_002264008.1| DNA topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238] gi|208010031|emb|CAQ80354.1| topoisomerase IV subunit B [Aliivibrio salmonicida LFI1238] Length = 626 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 255/647 (39%), Positives = 359/647 (55%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TEQYNAGAIEVLNGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKKVEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP S +E+IL LHAGGKF YE SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHP-VEKVSGVELILCKLHAGGKFSGKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R I+ F G +S L R RGT + F PD F Sbjct: 118 VVNALSKRVEVTVRRDGEIYEIAFEHGEKVSDLTVVGTCGRRNRGTSVHFWPDTSYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL+ ++KA L ++ + E ++ + GLK YL + Sbjct: 178 -KFSVSRLVNNLKAKAVLCPGLEIVFKDKVNDKE-------YQWCYEDGLKDYLLEGVAG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 +L+ FTG KG +WA+ W E E SY N I T +GGTH +G+R Sbjct: 230 YTLLPEIPFTGAFLGKGE---AADWAVTWLPEGGELVSESYVNLIPTAQGGTHVNGMRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S + Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFI 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 L+D F +L + P A + E I + R+R ++V RK LPGKL DC Sbjct: 347 SGVLKDAFSLWLNEKPQIAELIAEACIANAHRRMR--AAKKVVRKKIASGPTLPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++++ +Q++ ++ Sbjct: 405 SIQDLARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+LL + + L+ H+++ Sbjct: 465 SVALGIDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALYLKHFTSLVRAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DE K+ +LE + + KI + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDCGKEVFYALDEAEKEGVLERLS-NKRAKINVQRFKGLGEMNPLQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + T + ++ L+G K AD+R ++Q + Sbjct: 583 TRRLVQLTIDDD----EKTNEMMDMLLGKKRADDRRAWLQSNGDLAE 625 >gi|16273428|ref|NP_439677.1| DNA topoisomerase IV subunit B [Haemophilus influenzae Rd KW20] gi|260580311|ref|ZP_05848140.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW] gi|1172018|sp|P43703|PARE_HAEIN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|1574369|gb|AAC23174.1| topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd KW20] gi|260092988|gb|EEW76922.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW] Length = 632 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 256/647 (39%), Positives = 362/647 (55%), Gaps = 24/647 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + + V R I+ F G + LE R GT + F+P+PK F Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 FETLPKKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 287 LLDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 347 SGVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 405 GSQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 AVALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 524 PPLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 583 TRRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|332140122|ref|YP_004425860.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep ecotype'] gi|327550144|gb|AEA96862.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep ecotype'] Length = 631 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 247/645 (38%), Positives = 359/645 (55%), Gaps = 21/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y++ +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 SNQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASSIKVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y SGGLHGVGIS Sbjct: 59 LHEDQSLEVIDDGRGMPVDIHPE-EGISGVELILCKLHAGGKFSNKNYAFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + VT+ R ++++ F G + L+ + + GTR+ F PDP+ F Sbjct: 118 VVNALSNRVEVTIRRDSSVYQIAFENGDKVEDLQVIDTCGKRNTGTRVHFWPDPQYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL ++KA LS ++ + + E +E+++ GLK YL +E Sbjct: 178 -KFSVSRLKHNLRAKAVLSPGLRIRF-------DNKIAKESQEWFYEDGLKDYLYQAVEE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + S+ T + SY N I T +GGTH +GLR L Sbjct: 230 FETLPSDTPFVGNFTGNTEAADWAVMWLPEGGDLVTESYVNLIPTAQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ ILS +++P+FAGQTK +L S A V Sbjct: 290 ESMREFCEFRNLMPRGVKLSPDDIWDRCAYILSTKMQDPQFAGQTKERLSSRQASAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ A L E I ++ RLR+ ++V RK + LPGKL DCS Sbjct: 350 VVKDAFSLWLNQHTEIAEALAEMCINNAQRRLRQT--KKVARKKVTQGPALPGKLTDCSS 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q+I D+ Sbjct: 408 QDISYSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 468 ALGIDPDSTDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRTLVEQGHVYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA DE KQ IL+ + K GK+ + RFKGLGEM QL+ET MD N Sbjct: 527 LFRIDVGKEVYYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I ++ L ++ +R +++ + + + Sbjct: 587 RRLVQLTIEDAEEMMELMDML---LAKKRSGDRKTWLESKGNMAE 628 >gi|78707341|gb|ABB46477.1| DNA gyrase subunit B [Acholeplasma brassicae] Length = 591 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 241/606 (39%), Positives = 351/606 (57%), Gaps = 18/606 (2%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T E+ LHHL E++DN++DE +AGYA+ I + L N + V DNGRGIP Sbjct: 1 VRKRPGMYIGSTGERGLHHLVWEIVDNSIDECMAGYADEITIELLPNNIVKVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HPK ++ +E ILT LHAGGKFD +Y++SGGLHGVG SVVNAL+ VT+AR Sbjct: 61 VDLHPK-THRPAVETILTVLHAGGKFDGKSYKVSGGLHGVGSSVVNALTVWFRVTIARDG 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 ++ Q++ RG+P L+ + GT I F D +IF + +D RL Q A+L Sbjct: 120 KLYQQEYKRGVPQYDLKVIGESS-HTGTVIEFLADDEIFKEVNTYDFERLRNRIQELAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + VK S ++ K + + GG+ Y+ ++ ++ + + E G Sbjct: 179 NRNVKINISDQRDP--KTEKHVYYSYQYEGGIIEYVHFLNTSKQEVNKTVIYIEKEIDGI 236 Query: 298 HRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAI 355 TVE A+ + + + N I T EGG HE G ++ALTR + +YA+ K+ Sbjct: 237 ---TVELALQYNSDYSTNLFSFANNIHTHEGGMHEDGFKLALTRVLGRYAQEQNILKKDE 293 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 S I +D I+S+ +P+F GQTKTKL + + ++ + + YL++NP +A Sbjct: 294 SFIGEDTREGLTAIVSIKHPDPQFEGQTKTKLGNPEVRQITSQITGEILERYLMENPADA 353 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 ++E ++ S R+ RK RE R+ + + L KLADC +E++IVEGDSA Sbjct: 354 KAIIEKILMASRARIAARKAREATRRKSPLDMLGFASKLADCRNKSPEISEIYIVEGDSA 413 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQ R+ QA+LPLRGK+LNV + +KI +N++I+ ++QA G + R Sbjct: 414 GGSAKQGRDSEFQAILPLRGKVLNVEKSRLDKILSNKEILSMIQAFGTGIGEDFDAAKAR 473 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K++IMTDADVDGAHI +LLLTF Y+ + LI+ ++++ PPL+++ G K Y +DE Sbjct: 474 YHKIVIMTDADVDGAHIRTLLLTFLYRHLKGLIDMGYVYIAQPPLYKVQSGKKVEYVYDE 533 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E K+LE F G+ +I R+KGLGEM QL ET MD RTLLRV + +N Sbjct: 534 ERLPKVLEAFG----GRPQIQRYKGLGEMNPEQLWETTMDPTTRTLLRVSLQDAMN---- 585 Query: 655 TQDSIN 660 + Sbjct: 586 ADQVFS 591 >gi|183597858|ref|ZP_02959351.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827] gi|188022618|gb|EDU60658.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827] Length = 631 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 365/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YPDQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R I+ F G + L + GT + F PD + + D Sbjct: 120 VNALSKRIEVTVRRDGQIYQIAFENGDKVEELHVIGTCAKRNTGTSVHFWPD-ESYFDNP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L VK + E + + + GL YL + Sbjct: 179 RFSVSRLAHNLKAKAVLCPGVKITFKDQLNNTE-------QSWCYTDGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 L+ + FTG+ + EWA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ELLPDQPFTGEFSGE---SEAAEWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVA 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAIASAQRRMR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGMDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G ++ YA DE K +L+ + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKETFYALDESEKNAVLDRLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + K+T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTIDD--ENYKETVAVMDMLLAKKRSEDRRNWLQEKGDMAE 628 >gi|254482729|ref|ZP_05095967.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium HTCC2148] gi|214037088|gb|EEB77757.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium HTCC2148] Length = 628 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 258/647 (39%), Positives = 367/647 (56%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V L Sbjct: 2 SQYTAEDIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHADQIDVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G ++V DNGRG+PV+ HP+ K +E+IL+TLHAGGKF N YE SGGLHGVG+SV Sbjct: 59 HKGGSVSVSDNGRGMPVDIHPEQ-GKPGVEVILSTLHAGGKFSNKNYEFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS EL V++ R ++ FS G S L + + GT + F PD K F Sbjct: 118 VNALSSELVVSIKRDGSVHQITFSGGEKTSDLAVIDSCGKRNTGTMVKFTPDAKYFDSIN 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL+ + ++KA L ++ + +K+ E +E+Y+ GL YL + Sbjct: 178 -FSVSRLVHVLRAKAVLCPGLRVKFKDEKK-------GETQEWYYEDGLTDYLADATIDF 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 I E F G V+WA+ W E E+ SY N I T +GGTH +GLR L Sbjct: 230 PAIPEEPFVGSFSG---SSEGVDWAVQWLPEGGEVIAESYVNLIPTAQGGTHVNGLRTGL 286 Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E + R I + DD+ +LS + +P+F+GQTK +L S +A V Sbjct: 287 LDAMREFCELRSLLPRGIKLAPDDIWDRCCYVLSSKLGDPQFSGQTKERLSSREAAAFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ EA KL E I ++ R+R +++ RK LPGKLADCS Sbjct: 347 GVSKDAFSLWLNQHTEEAEKLAEMCINNAQSRMR--SAKKIVRKKVSAGPALPGKLADCS 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S++I +Q++ ++ Sbjct: 405 GEDPTRGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S DLRY KV I+ DAD DG HIA+L+ F + L+ H+++ P Sbjct: 465 IALGIDPASDDL-SDLRYHKVCILADADSDGLHIATLICALFVRHFRSLVAAGHVYVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE KQ +L+ + K G + + RFKGLGEM QL+ET MD + Sbjct: 524 PLYRIDVGKEVFYALDEGEKQGVLDRIEAEKKRGNVNVQRFKGLGEMNPLQLRETTMDPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+R+ ++ + T + ++ L+ K A +R +++++ + Sbjct: 584 TRRLVRLVLD----AGDGTNNMLDMLLAKKRASDRKAWLEKKGDLAE 626 >gi|317125075|ref|YP_004099187.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043] gi|315589163|gb|ADU48460.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043] Length = 710 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 239/708 (33%), Positives = 348/708 (49%), Gaps = 61/708 (8%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 S + + + +Y A +++LEGLE VR RPGMYIG TD++ L H E+IDNA+DE + Sbjct: 2 ASASRPAPNGNGDYTARHLQVLEGLEAVRKRPGMYIGSTDQRGLMHCLWEIIDNAVDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG + I+V L +G + V DNGRGIPV+ P+ S +E++ T LHAGGKF ++Y Sbjct: 62 AGVCDHIDVILARDGSIEVRDNGRGIPVDMEPR-TGLSGVELVFTKLHAGGKFGGTSYAA 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL----------------- 193 +GGLHGVG SVVNALS L V V R + F RG P Sbjct: 121 TGGLHGVGASVVNALSARLDVEVDRDGRTYGMSFRRGEPGIFTDSGSGHSPDSPFEPYEK 180 Query: 194 ----EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 K + G+R+ F PDP IF + D L+ + ++L ++ + Sbjct: 181 RSAVPVIGKTKRGVTGSRVRFWPDPHIFLKGSVLDYDALVGRARQTSFLVPGLRLVIRDE 240 Query: 249 KE--IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT--------- 297 + P +E F+ GG+ +++ + + G K T Sbjct: 241 RRLPGTPAADGPVEEVFHHDGGITEFVEFLAPDPPVTDVWRLQGSGTFKETVPILDNEGH 300 Query: 298 -------HRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 V+ A+ W + + S+ N I T +GGTH +G AL + ++ E+ Sbjct: 301 MSPTELERECVVDVALRWGQGYDARMQSFVNIITTPKGGTHVAGFEQALLKVFRRQLEIN 360 Query: 350 Q---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402 DD++ +++V + EP+F GQTK L + + R VE L Sbjct: 361 GRRLKVGNDKPDKDDVLAGMTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVARVVETELTA 420 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 + +A LLE V+ + R+ R +E RK A+ LP KL DC N Sbjct: 421 RLTSTKRGDKAQAALLLEKVVSEMKSRISARLHKETQRRKNALESSTLPTKLRDCRTNDV 480 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +ELFIVEGDSA G+AK+ARN QA+LP+RGKILNV A + N + ++Q +G Sbjct: 481 DRSELFIVEGDSAMGTAKEARNSEFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIG 540 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + + RY KVIIMTDADVDGAHI +LLLT F++ M L+E ++ PPL R Sbjct: 541 AGSGRSFDLAAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAMPPLHR 600 Query: 582 IT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634 I + + +Y ++E ++ + +K GK K + R+KGLGEM A QL +T MD Sbjct: 601 IEVVNAGAKKNELIYTYNEIEMRRTVARLEKTGKKIKQPMQRYKGLGEMNADQLADTTMD 660 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL RV + + + + LMG + R FI E A+ +D Sbjct: 661 PRHRTLRRVTM----RDFEAAEGTFELLMGNEVAPRKDFIIESAAEVD 704 >gi|296129899|ref|YP_003637149.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM 20109] gi|296021714|gb|ADG74950.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM 20109] Length = 713 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 236/708 (33%), Positives = 344/708 (48%), Gaps = 61/708 (8%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ Sbjct: 1 MTTTSPQAGYTARHLSVLEGLEAVRKRPGMYIGTTDSRGLMHCLWEIIDNSVDEALGGHG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV L + + V DNGRGIPV+ PK + +E++LT LHAGGKF +Y SGGL Sbjct: 61 DRIEVVLHADSSVEVRDNGRGIPVDVEPK-TGLTGVEVVLTKLHAGGKFGGGSYAASGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------- 199 HGVG SVVNALS L V V R F RG P + Sbjct: 120 HGVGASVVNALSARLDVEVDRNGRTHRMTFHRGEPGVFDDSAGVSPESPFEPFVQGSELA 179 Query: 200 ------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 + GTR+ + D +IF A F L+ + ++L + ++ I Sbjct: 180 VVGKVGKGVTGTRVRYWADRQIFPKTAVFSYDELVTRARQTSFLVPGLAITVRDERGIPG 239 Query: 254 K--YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295 P +E F GG+ ++ + + + TG ++ Sbjct: 240 TPGEHGPHEETFLHTGGVLDFVDHLAPDAPVTDTWHLTGSGTFTETVPVLDSRGHMTPQE 299 Query: 296 GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 T V+ A+ W E+ S+ N I T +GGTH +G AL + ++ + Sbjct: 300 VTRDCEVDVAVRWGTGYATEVRSFVNIISTPKGGTHLAGFETALLKTLRTQVTANARRLK 359 Query: 355 ISII--------SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRD 402 IS +D++ +++V + EP+F GQTK L + + + VE+ L Sbjct: 360 ISAKDSSSERLEKEDVLAGLTAVVTVRLAEPQFEGQTKEVLGTGPVRGIVAKVVESELTA 419 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIA 461 F ++ LL+ V+ R+ RKQ+E++R+ A+ LP KLADC + Sbjct: 420 LFSSSKREHKAHTALLLDKVVGEMRARVSARKQKEISRRKNALESSSLPAKLADCRIDDV 479 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 +ELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + N + ++Q +G Sbjct: 480 SRSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASVGDMLKNAECAAIIQVVG 539 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + + E RY K+++MTDADVDGAHI +LLLT F++ M L+E ++ PPL R Sbjct: 540 AGSGRTFDLEAARYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEDGRVYAAVPPLHR 599 Query: 582 I------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMD 634 I ++ + +Y + E L++ + G+ K +I R+KGLGEM A QL ET MD Sbjct: 600 IEVIGAGSRKNEYLYTYSEAELAATLKKLDRAGRRYKDDIQRYKGLGEMDADQLAETTMD 659 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL RV I + + + LMG+ R FI A +D Sbjct: 660 PRHRTLRRVRIGEAEAAAAQVEKVFELLMGSDVAPRKDFIVANAHALD 707 >gi|240950305|ref|ZP_04754580.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305] gi|240295207|gb|EER46015.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305] Length = 636 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 372/649 (57%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYATQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HKDNSLEVIDNGRGMPVDIHS-TEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+ + +T+ R I++ F+ G+ + L + + GT + F P+PK F Sbjct: 120 VNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFDSP- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ ++ +E +Y+ GL YL L+ Sbjct: 179 KFSVSRLRHLLKAKAVLCPKLTINFTDK-------INDTQESWYYEDGLSDYLSEALKEY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + I ++ E+ + I + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAITEFCEIHNLLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN L E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQIGKTLAELAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 IAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE+ K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEDEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINKDLNSLKD--TQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + +D T + ++ L+ K +++R +++Q R + + Sbjct: 585 TRRLVQLTFEEREEDGQDSQTFELMDMLLAKKRSEDRKQWLQNRGNEAE 633 >gi|119470529|ref|ZP_01613232.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7] gi|119446230|gb|EAW27507.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7] Length = 629 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 237/641 (36%), Positives = 347/641 (54%), Gaps = 22/641 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 QNYNAEAIEVLNGLDPVKRRPGMY---TDTVRPNHLGQEVIDNSVDEAMAGHATKIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V D+GRG+P++ HP+ +E+I T LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HEDNSLEVSDDGRGMPIDIHPE-EGIPGIELIFTKLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + F G + L V + GT + F D F Sbjct: 120 VNALSTRVEVTVRRDAQQYRMAFENGDKVEDLNVIGTVGKRNTGTTVRFWADASYFDSAN 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + +L + ++KA L ++ + E +E+++ GLK YL ++ Sbjct: 180 -YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLIEAVKGF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + + F G+ K SY N I T +GGTH +GLR L Sbjct: 232 ETLPQDPFVGEF-KSAIEGVDWAVVWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGLLE 290 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 ++++ E R + + DD+ +LSV +++P+FAGQTK KL S V Sbjct: 291 AMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRTCAALVSGV 350 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L ++ A L E I ++ RL+ ++V RK LPGKL DCS Sbjct: 351 VKDAFSLWLNEHTDTAELLAELCISNAQSRLK--AAKKVVRKRVTAGPALPGKLTDCSAA 408 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ A Sbjct: 409 DNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVESGQILASQEVHDISVA 468 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ PPL Sbjct: 469 LGIDPDSADM-SGLRYNKICILADADSDGLHIATLLCALFVRHFPQLVKTGHVYVAMPPL 527 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638 FRI G + YA DE+ K IL + K GK+ + RFKGLGEM QL+ET MD N R Sbjct: 528 FRIDIGKEVYYALDEDEKTSILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNTR 587 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 L+++ +++++ +++ L ++ +R +++++ + Sbjct: 588 RLVQLTLDEEVQTMEMMDML---LAKKRSPDRRQWLEDHGN 625 >gi|212633643|ref|YP_002310168.1| DNA topoisomerase IV subunit B [Shewanella piezotolerans WP3] gi|212555127|gb|ACJ27581.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3] Length = 631 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 240/648 (37%), Positives = 357/648 (55%), Gaps = 26/648 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+ Sbjct: 3 AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 60 VILHADNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS + +TV R ++ F G + L R GTR+ F PD F Sbjct: 119 ISVVNALSSRVEITVRRNAEVYDMAFEHGEKVEDLRVTGTCGRRNTGTRVHFWPDASYFD 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F +L + ++KA L ++ + E +E+++ GL+ YL++ + Sbjct: 179 SGN-FSITKLSYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLKSSI 230 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335 + ++ F G + +WAI W E + SY N I T GGTH +G R Sbjct: 231 DGVPMLPEVPFVGNFKGN---LEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R I + +D+ ILS+ +++P+FAGQTK KL S Sbjct: 288 QGLLESMREFCEFRNLVPRGIKLTPEDIWDRCTFILSIKMQDPQFAGQTKEKLSSRQCAA 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V +RD F +L N +A L + I +++RL+ ++V RK LPGKL Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDATQVLASQEVH 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 466 DISVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEEGHIYV 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPLFRI G + YA DE + IL+ KGK++++RFKGLGEM QL+ET M Sbjct: 525 AMPPLFRIDIGKEVFYALDEAERDGILDRIAAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 D N R L+++ ++ ++L L ++ +R +++ + Sbjct: 585 DPNTRRLVQLTVDDADDTLAVMDML---LAKKRSSDRKVWLETKGDLA 629 >gi|260599300|ref|YP_003211871.1| DNA topoisomerase IV subunit B [Cronobacter turicensis z3032] gi|260218477|emb|CBA33631.1| DNA topoisomerase 4 subunit B [Cronobacter turicensis z3032] Length = 630 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 250/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L + + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPD-EKFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTE-------QRWCYLDGLNDYLCEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LITLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQNVQAAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVKHFRSLVKGGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D ++ ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLTISDDDDARTLA--VMDMLLAKKRSEDRRNWLQEKGDMAD 627 >gi|51597693|ref|YP_071884.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 32953] gi|186896834|ref|YP_001873946.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis PB1/+] gi|51590975|emb|CAH22633.1| topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 32953] gi|186699860|gb|ACC90489.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis PB1/+] Length = 631 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 359/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLNLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I+ D ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|156932596|ref|YP_001436512.1| DNA topoisomerase IV subunit B [Cronobacter sakazakii ATCC BAA-894] gi|156530850|gb|ABU75676.1| hypothetical protein ESA_00378 [Cronobacter sakazakii ATCC BAA-894] Length = 630 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 249/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQSYNADAIEVLTGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R I++ F G + L + + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVKRDGQIYNIAFENGEKVKELSVVGTCPKRQTGTSVHFWPD-EKFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 177 PRFSVSRLTHLLKAKAVLCPGVEINFKDQVNNTE-------QRWCYQDGLNDYLSEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LITLPEKPFIGNFSGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDVFSLWLNQNVQAAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKGGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D ++ ++ L+ K +++R ++QE+ D Sbjct: 583 TRRLVQLTISDDDDARTLA--VMDMLLAKKRSEDRRNWLQEKGDMAD 627 >gi|90020023|ref|YP_525850.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40] gi|89949623|gb|ABD79638.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40] Length = 631 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 251/645 (38%), Positives = 368/645 (57%), Gaps = 26/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I +L GL+PV+ RPGMY TD +HL E+IDN++DE +AG+A IEV L Sbjct: 3 NYSAEDIEVLTGLDPVKKRPGMY---TDTVRPNHLAQEIIDNSVDEALAGHAKKIEVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV D+GRG+PV+ HP+ K +E+IL+TLHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 60 KDQSVTVTDDGRGMPVDLHPEQ-KKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ L VT+ R ++ F G +S LE + + GT + F P+P F Sbjct: 119 NALSESLEVTIRRDGQVYRMGFKNGDKVSDLEVIDTCGKRNTGTSVRFLPNPSYFDSH-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL ++KA L ++ ++ + +K+ +Y+ GLK YL E Sbjct: 178 FSVSRLRHNLRAKAVLCPGLEVVFTDE-------QTGDKDTWYYEDGLKDYLSQATEGWE 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + ++ F G +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 TLPADPFVGSFTG---TTEAADWAVQWLPEGGEVTQESYVNLIPTAQGGTHVNGLRTGLM 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +++Y E+ R I I DD+ ++ +LS + +P+F+GQTK +L S +A V Sbjct: 288 EAMREYCEIRNLVPRGIKITPDDVWMNCCFVLSSKLADPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +D F +L Q+ E KL E+ I +++R+R ++V RK LPGKLADCS Sbjct: 348 VAKDAFSLWLNQHTEEGDKLAEFCINNAQKRVR--SSKKVARKKITAGPALPGKLADCSS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + ELF+VEGDSAGGSAKQAR+R +QA++PLRGKILN S+++ +Q++ D+ Sbjct: 406 DDPANGELFLVEGDSAGGSAKQARDRDHQAIMPLRGKILNTWEVESQEVLASQEVHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S + LRY K+ I+ DAD DG HIA+LL FYQ L+ H+++ PP Sbjct: 466 ALGIDPGSDNL-DGLRYHKICILADADSDGLHIATLLCALFYQHFRALVSAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA D+ KQ IL+ + KGK+ + RFKGLGEM QL+ET M + Sbjct: 525 LYRIDIGQDVYYALDDSEKQGILDRIVAEKKKGKVNVQRFKGLGEMNPLQLRETTMARDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+++ + + L ++ +R +++++ D Sbjct: 585 RRLVQLTIDEEDETTQLMDML---LAKKRSGDRKTWLEDKGDLAD 626 >gi|90580747|ref|ZP_01236550.1| DNA topoisomerase IV subunit B [Vibrio angustum S14] gi|90438015|gb|EAS63203.1| DNA topoisomerase IV subunit B [Vibrio angustum S14] Length = 627 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 262/646 (40%), Positives = 368/646 (56%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L VVD+GRG+PV+ HP+ S +E+IL LHAGGKF Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G +S LE R +GTR+ F PDPK F Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSDLEVIGTCGRRAKGTRVHFWPDPKYFDSA- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L ++ ++ E + + GLK YL ++ Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 +L+ E FTG + +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 TLLPEEPFTGVFS---SQTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L + P A +L E I + R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q++ D+ Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY K+ ++ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVFIAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K ILE K +GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLYRIDLGKEVYYALDEAEKNSILERLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D +T + ++ L+G K A++R ++Q + + Sbjct: 585 RRLVQLTIDDD----SETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626 >gi|22127385|ref|NP_670808.1| DNA topoisomerase IV subunit B [Yersinia pestis KIM 10] gi|45442746|ref|NP_994285.1| DNA topoisomerase IV subunit B [Yersinia pestis biovar Microtus str. 91001] gi|108810691|ref|YP_646458.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516] gi|145597760|ref|YP_001161836.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F] gi|150260300|ref|ZP_01917028.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125] gi|153950532|ref|YP_001399571.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 31758] gi|162420269|ref|YP_001604896.1| DNA topoisomerase IV subunit B [Yersinia pestis Angola] gi|165924916|ref|ZP_02220748.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939896|ref|ZP_02228435.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008986|ref|ZP_02229884.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212022|ref|ZP_02238057.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167419067|ref|ZP_02310820.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425082|ref|ZP_02316835.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022910|ref|YP_001719415.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis YPIII] gi|218927861|ref|YP_002345736.1| DNA topoisomerase IV subunit B [Yersinia pestis CO92] gi|229837350|ref|ZP_04457513.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A] gi|229840562|ref|ZP_04460721.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842890|ref|ZP_04463042.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229900889|ref|ZP_04516013.1| topoisomerase IV subunit B [Yersinia pestis Nepal516] gi|270487739|ref|ZP_06204813.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27] gi|294502735|ref|YP_003566797.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003] gi|21960472|gb|AAM87059.1|AE013954_3 DNA topoisomerase IV subunit B [Yersinia pestis KIM 10] gi|45437612|gb|AAS63162.1| topoisomerase IV subunit B [Yersinia pestis biovar Microtus str. 91001] gi|108774339|gb|ABG16858.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516] gi|115346472|emb|CAL19345.1| topoisomerase IV subunit B [Yersinia pestis CO92] gi|145209456|gb|ABP38863.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F] gi|149289708|gb|EDM39785.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125] gi|152962027|gb|ABS49488.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis IP 31758] gi|162353084|gb|ABX87032.1| DNA topoisomerase IV, B subunit [Yersinia pestis Angola] gi|165912207|gb|EDR30845.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923116|gb|EDR40267.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992325|gb|EDR44626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206768|gb|EDR51248.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166963061|gb|EDR59082.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055845|gb|EDR65626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749444|gb|ACA66962.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis YPIII] gi|229682228|gb|EEO78320.1| topoisomerase IV subunit B [Yersinia pestis Nepal516] gi|229690157|gb|EEO82214.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229696928|gb|EEO86975.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705473|gb|EEO91483.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A] gi|262360767|gb|ACY57488.1| DNA topoisomerase IV subunit B [Yersinia pestis D106004] gi|262364712|gb|ACY61269.1| DNA topoisomerase IV subunit B [Yersinia pestis D182038] gi|270336243|gb|EFA47020.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27] gi|294353194|gb|ADE63535.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003] gi|320016769|gb|ADW00341.1| topoisomerase IV subunit B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 631 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 249/648 (38%), Positives = 358/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I+ D ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|251791330|ref|YP_003006051.1| DNA topoisomerase IV subunit B [Dickeya zeae Ech1591] gi|247539951|gb|ACT08572.1| DNA topoisomerase IV, B subunit [Dickeya zeae Ech1591] Length = 631 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 250/649 (38%), Positives = 363/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L R GTR+ F PD F Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQELTVTGTCGRRNTGTRVHFWPDASFFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L + ++KA L V+ + E + + + GGL YL + Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F VEWA+ W E E + SY N I T +GGTH +GLR L Sbjct: 232 PTLPEKPFVAAIPGDTE---AVEWALLWLPEGGELLMESYVNLIPTLQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRGGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ IN+ ++ T +++ L+ K +++R ++QE+ + + Sbjct: 585 RRLVQLTINE--QDIEQTLATMDMLLAKKRSEDRRNWLQEKGDKAE-LD 630 >gi|256825419|ref|YP_003149379.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547] gi|256688812|gb|ACV06614.1| DNA topoisomerase IV subunit B [Kytococcus sedentarius DSM 20547] Length = 710 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 230/705 (32%), Positives = 345/705 (48%), Gaps = 60/705 (8%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A A+ +++ +YDA +++LEGLE VR RPGMYIG TD + L H E+IDN++DE + G Sbjct: 5 TAKASTTSTSSYDARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGG 64 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A ++V+L +G + V D+GRG+PV+ P+ + +E++ T LHAGGKF +Y SG Sbjct: 65 FATGVDVTLHADGSVEVADDGRGVPVDIEPR-SGLTGVELVYTKLHAGGKFGGGSYTASG 123 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP----------------------L 190 GLHGVG SVVNALS L V V R + F RG P Sbjct: 124 GLHGVGASVVNALSSRLDVEVDRGGKTWVMSFRRGEPGVFDDAGGEPSPDNPFTPFTTGS 183 Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 +E+ + R GTR+ + DP+IF A F +L + ++L ++ + + Sbjct: 184 ELIERGKTKRGVTGTRVRYWADPQIFLADAEFSHRQLTDRARQTSFLVPGLRIGLTDKRR 243 Query: 251 IAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293 I G E F GG+ ++ ++++ + G Sbjct: 244 IPGTPGETATHTETFLHSGGITEFVDYLAPDQAVTDTWRLQGTGTFTETVPVLDDAGHMV 303 Query: 294 -KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKY---AEL 348 + V+ A+ W S+ N I T +GGTH +G AL + ++K Sbjct: 304 PTEVERDCEVDIALRWGTGYDAVQRSFVNIIATPKGGTHVAGFEQALLKVVRKQVEANSR 363 Query: 349 TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 + DD + +++V + EP+F GQTK L + + V + Sbjct: 364 KLKPGKDKVEKDDALAGLTAVVTVRLAEPQFEGQTKEVLGTSAVRSIVSKGVETELTEIF 423 Query: 409 VQNPIEATKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463 + + LE ++ + R+ R +E RK A+ LP KL DC Sbjct: 424 TSSARGRKQQAGAVLEKIVTEMKSRVSARMHKETQRRKNALETSSLPTKLVDCRSTETEA 483 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK AR QA+LP+RGKILN A + N++ ++Q++G Sbjct: 484 SELFIVEGDSALGTAKLARQSDFQALLPIRGKILNTQKASVADMLGNEECAAIIQSIGAG 543 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT 583 + + RY K+IIMTDADVDGAHI +LLLT F++ M +++ +F PPL RI Sbjct: 544 SGRSFDLASARYGKIIIMTDADVDGAHIRTLLLTLFFRYMRPMVDAGRVFAAVPPLHRIE 603 Query: 584 -----QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANK 637 + VY + E H +K L K++G+ K + R+KGLGEM A QL ET MD Sbjct: 604 VVNRGKANDYVYTYSEAHLRKELARLKRNGRTLKDPLQRYKGLGEMDADQLAETTMDPAH 663 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + + +D N LMG+ R +FI A+ +D Sbjct: 664 RTLRRITM----RDAQVGEDVFNLLMGSDVAPRKEFIISNAATLD 704 >gi|167625558|ref|YP_001675852.1| DNA topoisomerase IV subunit B [Shewanella halifaxensis HAW-EB4] gi|167355580|gb|ABZ78193.1| DNA topoisomerase IV, B subunit [Shewanella halifaxensis HAW-EB4] Length = 631 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 242/646 (37%), Positives = 355/646 (54%), Gaps = 26/646 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+ Sbjct: 3 AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 60 VILHADNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS + +TV R ++ F G + L R GT + F PDP F Sbjct: 119 ISVVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDPSYFD 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ++L + ++KA L ++ + E +E+++ GL+ YL++ + Sbjct: 179 SGN-FSISKLTYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLKSSI 230 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335 + F G +WAI W E + SY N I T GGTH +G R Sbjct: 231 NGVPTLPEVPFVGSFAGN---LEAADWAITWLPEGGDYLNESYVNLIPTPLGGTHVNGFR 287 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R I + +D+ + ILS+ +++P+FAGQTK KL S Sbjct: 288 QGLLESMREFCEFRNLMPRGIKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAA 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V +RD F +L N +A L + I +++RL+ ++V RK LPGKL Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 466 DISVAIGCDPDSADI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYV 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPLFRI G YA DE K IL+ KGK++++RFKGLGEM QL+ET M Sbjct: 525 AMPPLFRIDIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 D N R L+++ I+ +++ L ++ +R +++ + Sbjct: 585 DPNTRRLVQLTIDDADDTMALMDML---LAKKRSGDRKTWLEAKGD 627 >gi|225020879|ref|ZP_03710071.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii ATCC 33806] gi|224946361|gb|EEG27570.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii ATCC 33806] Length = 646 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 241/658 (36%), Positives = 360/658 (54%), Gaps = 49/658 (7%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T+E+ LHHL EV+DN++DE +AGYA+ +EV++ +G + V+DNGRGIPVE HP Sbjct: 1 MYIGSTNERGLHHLVWEVVDNSVDEAMAGYADKVEVTILADGGIEVIDNGRGIPVEMHP- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS + + R + Q Sbjct: 60 -SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ IP GT + F PDP++F F + + Q A+L+ + Sbjct: 119 FTNAIPEEL--VAGGPAEGTGTTVRFWPDPEVFETTV-FSFELIARRLQEMAFLNKGLTI 175 Query: 244 CWSCDKEIAEK---------------------------YGIPEKEEFYFPGGLKTYLQTK 276 + + E+ +K+ FY+P GL+ Y++ Sbjct: 176 TLTDKRASEEEIELETLAEEIAEGDPETAVEAAEEKVVKKKEKKKTFYYPNGLQDYVEHL 235 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 ++++ I I + + + + VE A+ W + ++ NTI T EGGTHE G R Sbjct: 236 NKSKTAIHPTIISLEVKGEN---LEVEVAMQWNSGYAQSVHTFANTINTIEGGTHEEGFR 292 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALT + KYA + ++ ++ DD ++SV + EP+F GQTKTKL + + + Sbjct: 293 AALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAAVISVRVGEPQFEGQTKTKLGNSEVR 352 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGK 452 V+ A+ + +L NP EA ++ + + R+ RK RE+ RK+A LPGK Sbjct: 353 GFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGK 412 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC +EL+IVEGDSAGGSAK R+ QA+LPLRGKILNV A +K+ N + Sbjct: 413 LADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNNE 472 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ ALG ++ + LRY K+++M DADVDG HIA+LLLT ++ M LIE+ H+ Sbjct: 473 VQAIITALGTGIHDEFDIQKLRYGKIVLMADADVDGQHIATLLLTLLFRFMPQLIEEGHV 532 Query: 573 FLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE----ISRFKGLGEMLASQ 627 FL PPL+++ +A+ + + ++L E G+ KI I R+KGLGEM AS+ Sbjct: 533 FLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGLAAGR-KINKDDGIQRYKGLGEMNASE 591 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L ET +D R L RV D+N + + + LMG R FI +A + + Sbjct: 592 LWETTLDPQVRILRRV----DMNDAQLADELFSILMGDDVAARRSFITRKAKDVRFLD 645 >gi|304413731|ref|ZP_07395175.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola LSR1] gi|304283822|gb|EFL92216.1| DNA topoisomerase IV subunit B [Candidatus Regiella insecticola LSR1] Length = 647 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA+ I V L Sbjct: 21 SNYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSIDEALAGYAHRINVIL 77 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L++ D+GRG+PV+ HP+ +E+IL LHAGGKF N +Y+ SGGLHGVGISV Sbjct: 78 HADQSLSISDDGRGMPVDLHPE-EGVPAIELILCRLHAGGKFSNKSYQFSGGLHGVGISV 136 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKA 220 VNALS L VTV R I+ F +G + L+ ++ GT + F PD F Sbjct: 137 VNALSRRLEVTVQRNGKIYRIVFEQGNKVQDLQIIGTCTKSHTGTHVHFWPDASFFDSPR 196 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L +K C+ + E + + + GL YL + Sbjct: 197 -FSVSRLSHLLKAKAVLCPGIKICFKDEVNNTE-------QRWCYADGLTDYLMESVNGL 248 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G ++WA+ W E E SY N I T +GGTH +GLR + Sbjct: 249 ITLPKKPFIGTFSA---ATEAIDWALLWLPEGGELLTESYVNLIPTIQGGTHVNGLRQGV 305 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 306 LDAMREFCEFCNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFAS 365 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L +N A +L E+V+ ++ RLR ++V RK + LPGKLADCS Sbjct: 366 GIVKDTFSLWLHKNRSTAEQLAEFVVSNAQRRLR--AAKKVVRKKLMSGPALPGKLADCS 423 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S++I +Q++ D+ Sbjct: 424 SNELSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNSWEIASDEILASQEVHDIS 483 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G ++ LRY K+ I+ DAD DG HIA+LL F + L+ +++ P Sbjct: 484 VAIGIDPDNEDL-SQLRYGKICILADADSDGLHIAALLCALFVRHFRSLVRDGRIYVAMP 542 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ ++ +GK + RFKGLGEM QL+ET +D N Sbjct: 543 PLYRIDLGKEVFYALDEEEKTGILEQLQRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 601 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D ++ L+ K A++R ++QE+ + + Sbjct: 602 RRLVQLTIDDDNMDHTLA--IMDMLLAKKRAEDRRNWLQEKGNLAE 645 >gi|85713135|ref|ZP_01044168.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145] gi|85693051|gb|EAQ31016.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145] Length = 630 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 358/646 (55%), Gaps = 28/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y + SI +L GLEPV+ RPGMY TD +HL EVIDN++DE +AG+A I V L Sbjct: 3 DYKSDSIEVLNGLEPVQRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKTITVVLH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V D+GRG+PV+ HP+ +E+I++ LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 KDQSLEVTDDGRGMPVDIHPE-EKIPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + +T+ R + ++ F G +S L+ + GTR+ F PD + + D + Sbjct: 119 NALSKRVEITIRRDSQVYEMAFENGDKVSELDVTGTCGKRNTGTRVHFWPD-EQYFDSSK 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +L + ++KA L + + + E +++ GL YL+ +E Sbjct: 178 FSVLKLTHLLRAKAVLCPGLTIRFINHVDGEETS-------WFYEDGLTDYLREAVEEYP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + F G K EWA+ W E E SY N I T GGTH +GLR L Sbjct: 231 TLPEAPFDGSFVSKTE---AAEWAVTWLPEGGEAVTESYVNLIPTALGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ ILS+ + +P+FAGQTK +L S + V Sbjct: 288 EAMREFCEFRNLTPRGVKLTPDDVWERCSYILSLKMEDPQFAGQTKERLSSRQSASFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +A L E I ++ RL+ ++V RK LPGKL DCS Sbjct: 348 VVKDSFSLWLNEHTEQAEALAELCISNAQRRLK--ASKKVVRKKVTSGPALPGKLTDCSG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN E+I +Q+I D+ Sbjct: 406 QDSERSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S + LRY K+ I+ DAD DG HIA+LL F + L+E H+F+ PP Sbjct: 466 AVGVDPNSVDL-DKLRYNKICILADADSDGLHIATLLCALFVKHFRPLVENGHIFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE KQ IL+ + KGK+ + RFKGLGEM L+ET MD N Sbjct: 525 LYRIDVGKDVFYALDEGEKQGILDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++ ++ L+ K A +R +++ + + D Sbjct: 585 RRLVQLTIDD----AEAMEELMDMLLAKKRAADRRTWLESKGNMAD 626 >gi|293363914|ref|ZP_06610650.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] gi|292552404|gb|EFF41178.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] Length = 637 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 232/657 (35%), Positives = 344/657 (52%), Gaps = 33/657 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S ++ Y A +I L+GLE VR RPGMYIG TD LHHL E++DN++DE +AG+AN I Sbjct: 2 SNNNTYTAKNITQLKGLEAVRKRPGMYIGSTDVNGLHHLVWEIVDNSIDEALAGFANKIS 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G +T+ DNGRGIPV +S +E++ T LHAGGKF+ Y+ SGGLHGVG Sbjct: 62 VKLGIDGSVTIEDNGRGIPVGK--TESGRSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS ++ VTV R + +F + L + K + GT++ F PD F Sbjct: 120 SSVVNALSTKVVVTVYRDGNEYLTEFCQDKILKKTQVVGKSKKV-GTKVQFWPDYD-FFK 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +A + + + + +L ++ + E F F G+ +L + Sbjct: 178 RAKLNYDVISERLKESCFLISNLEIKLYDE-------STSTSETFRFSDGIAAFLGFVND 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 ++S I+ I + K ++ ++ N I S+ N + T +GGTHE+GL+ AL Sbjct: 231 SKSAITQAITFNDSRKGIEVDCGFQYTDSY---NELIVSFVNNVKTRDGGTHETGLKTAL 287 Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 T+ + + + D+ ILS+ + E EF GQTK KL + DA+ Sbjct: 288 TKVFNDFGIEEGVLKNKNVFEPSDIREGLSVILSLKVPEKLLEFVGQTKDKLGTPDAKGV 347 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE + +++++ A K+L+ + E R +KQR+ RKT K L K Sbjct: 348 VEELVTKHLKMWIIEHKQLAKKVLDKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK R+R QA+LPLRGK++NV + I N + Sbjct: 408 LTPAQSKKPEEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTE 467 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ++G ++ +Y K+IIMTDAD DGAHI LLLTF Y+ M LIE + Sbjct: 468 IGTIINSIGAGYGKEFDLSKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEAGKV 527 Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PPL++ + K YA DE ++IL + G EI R+KGLGEM A QL E Sbjct: 528 YIALPPLYKASNKAKNLVYYAWDESELKEILSK-----PGSWEIQRYKGLGEMNADQLWE 582 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF--IDDVG 685 T M+ R++++V + + + ++ LMG A R +I + F D+ Sbjct: 583 TTMNPATRSIIKVTMED----ITLAERRVSTLMGNNASLRKNWIDKHVDFSNEDNFD 635 >gi|82798482|gb|ABB91904.1| DNA gyrase subunit B [Acholeplasma cavigenitalium] Length = 588 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 234/606 (38%), Positives = 339/606 (55%), Gaps = 21/606 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T HHL E++DN++DE +AGYA I + + + V D+GRGIP Sbjct: 1 VRKRPGMYIGTTGSDGFHHLVWEIVDNSIDEALAGYAKEILLEILPGEIIRVSDDGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HP + +E I+TTLH+GGKFD +Y++SGGLHGVG +VVNALS+ V V R N Sbjct: 61 VDIHP-HTGRPAVETIMTTLHSGGKFDGESYKVSGGLHGVGAAVVNALSEWFVVEVHRNN 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + Q F RGIP LE + GT I ++ DP+IF + +D RL + Q A+L Sbjct: 120 QAYRQSFKRGIPDGDLEVCGESA-HSGTIIEYKFDPEIFIETTSYDFERLRQRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + VK + ++ + + GGL Y + ++ I+ E+F + Sbjct: 179 NRGVKLTIADKRKSEAVEFE-----YLYEGGLVEYAEFLNGGKAKINQELFYTEEMVDDI 233 Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAI 355 +E I + + I S+ N I T EGG HE G ++AL R + YA+ + K Sbjct: 234 ---NIEITIQYNDTYNENIYSFANNIPTREGGMHEDGFKMALRRVLFNYAKDNKLVKEEE 290 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + +D+ V I+SV +P+F GQTKTKL + + + L+ + +L++NP +A Sbjct: 291 AFAGEDVREGLVAIISVKHPDPQFEGQTKTKLGNTEVRAITSQVLQSGLERFLLENPNDA 350 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 ++E + R+ K RE R+ + +L KLADC A EL+IVEGDSA Sbjct: 351 KAIIEKAKKARLARIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSA 410 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 GGSAKQ R QA+LPLRGK+LNV A E+I NNQ+I+ L QA+G ++ R Sbjct: 411 GGSAKQGRESEFQAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFGDEFDASKAR 470 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K+IIMTDADVDGAHI +LLLTF Y+ + LIE +++ PPL++I+ G + Y + + Sbjct: 471 YHKIIIMTDADVDGAHIRTLLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYSD 530 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ L+ F + + +I R+KGLGEM QL +T M+ RTLLRV + + D Sbjct: 531 QELEETLKTFGE----RYQIQRYKGLGEMNPEQLWDTTMNPETRTLLRVTLKDAM----D 582 Query: 655 TQDSIN 660 Sbjct: 583 ADQVFT 588 >gi|323465562|gb|ADX69249.1| DNA gyrase subunit B [Lactobacillus helveticus H10] Length = 613 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 232/628 (36%), Positives = 346/628 (55%), Gaps = 20/628 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E+IDN++DE +AG+A IE++++ +G +TV D+GRGIPV+ K Sbjct: 1 MYIGSTSSQGLHHLVWEIIDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 + LE + T LHAGGKF Y++SGGLHGVG SVVNALS +L VTV R + Sbjct: 61 -TGRPALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFID 119 Query: 184 FSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G +++ V ++ GT + F PDP IF + FD L + A+L+ +K Sbjct: 120 FDHGRVKDEMKQIGTVPLDQHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLK 179 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 ++ ++ + E + + + GG+K Y+ + + ++ E ++ G V Sbjct: 180 LTFTDKRKDS-----AETDVYKYEGGIKEYVAFLNKGQEVLFDEPIYVESTYNGI---DV 231 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ + + ++ N I T EGG HE+G + ALTR + YA + + ++ Sbjct: 232 EVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSG 291 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+ ++SV P+F GQTKTKL + DA+ V+ + + F +L++NP K++ Sbjct: 292 EDIREGMTAVVSVKHPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIV 351 Query: 420 EW-VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 E + +R + +K+ + LPGKLAD + N +ELFIVEG+SAGGSA Sbjct: 352 EKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSA 411 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQ R+R QA+LP+RGKILNV A ++I NQ+I L ALG + + RY K+ Sbjct: 412 KQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKL 471 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 IIMTDADVDGAHI +LLLT FY M +IE+ ++++ PPL+++ QG Y +E Sbjct: 472 IIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELH 531 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 L + K + R+KGLGEM QL ET M+ R L RV KD Sbjct: 532 DYLGSLQPS--PKPVVQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEY----AKDADAV 585 Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686 LMG + R FIQ+ A +++++ Sbjct: 586 FELLMGNEVAPRRDFIQKNAKYVENLDA 613 >gi|271498905|ref|YP_003331930.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech586] gi|270342460|gb|ACZ75225.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech586] Length = 631 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 249/649 (38%), Positives = 363/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L R GTR+ F PD F Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQDLMVTGTCGRRNTGTRVRFWPDVTFFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L + ++KA L V+ + E + + + GGL YL + Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G VEWA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PTLPEKPFVGAIPGDTE---AVEWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVQGGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ +++ ++ T +++ L+ K +++R ++QE+ + + Sbjct: 585 RRLVQLTVSE--QDIEQTMATMDMLLAKKRSEDRRNWLQEKGDKAE-LD 630 >gi|307822419|ref|ZP_07652651.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96] gi|307736985|gb|EFO07830.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum SV96] Length = 630 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 251/648 (38%), Positives = 367/648 (56%), Gaps = 27/648 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y+A++I +L GLEPVR RPGMY TD +HL EV+DN++DE +AG+A I+V Sbjct: 2 SNEYNAAAIEVLSGLEPVRKRPGMY---TDTTRPNHLVQEVVDNSVDEAMAGHATAIDVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V DNGRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG+S Sbjct: 59 LYKDGSVLVSDNGRGMPVDIHPEQ-GIPGVEVILTQLHAGGKFSNKNYQFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS +L V V R I+ ++ G + L + V +N GT I F P+ + + D Sbjct: 118 VVNALSAKLEVEVKRNGKIYRMDYADGEKQTELVETGTVGKNNTGTSIRFWPN-EKYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +L + ++KA L +K D E+ + + GLK YL ++ + Sbjct: 177 NKISVLKLKHVLRAKAVLCPGLKISLKVD-------QTDEEYFWCYQDGLKEYLLDRIGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI---TSYCNTILTDEGGTHESGLRV 336 + F G VEW I W ENP SY N + T +GGTH +GLR Sbjct: 230 IDYCPEQPFMGNMAAN---HEAVEWGIVWAIENPAEVLAESYVNLVPTAQGGTHVNGLRA 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT ++++ ++ R + + +D+ + +LSV + +P+F+GQTK +L S + Sbjct: 287 GLTEAMREFCDIRNILPRGVKVAPEDVWENCHFVLSVKLEDPQFSGQTKERLSSRECVAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V +D F +L QNP E K+ E +I +++RLR +++ RK LPGKLAD Sbjct: 347 VSGVAKDSFSLWLNQNPAEGEKIAEIIISSAQKRLRSN--KKIIRKKITSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS TELF+VEGDSAGGSAKQAR R QA++PLRGKILN S ++ +Q++ D Sbjct: 405 CSAQDIARTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWEVESNQVMASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S ++LRY KV I+ DAD DG HIA+L+ FYQ L+ H+F+ Sbjct: 465 IAVALGIEPGSSDL-QNLRYGKVCILADADSDGNHIATLICALFYQHFNALVVAGHVFVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE +Q +L+ KG+I + RFKGLGEM SQL+ET M+ Sbjct: 524 MPPLYRIDVGKRVFYALDEAERQGVLDRITAEKLKGQINVQRFKGLGEMNPSQLRETTMN 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L+++ + +D ++ L ++ +R +++ + + D Sbjct: 584 PDTRRLVQLTVLEDDDTNGQLDLL---LAKKRSQDRKVWLETKGNLAD 628 >gi|165976673|ref|YP_001652266.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876774|gb|ABY69822.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 637 Score = 544 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HADNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLNRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|300724859|ref|YP_003714184.1| DNA topoisomerase IV subunit B [Xenorhabdus nematophila ATCC 19061] gi|297631401|emb|CBJ92098.1| DNA topoisomerase IV, subunit B [Xenorhabdus nematophila ATCC 19061] Length = 631 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNAEAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HSDQSLEVIDDGRGMPVDIHPE-EKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + + F G + L+ + GT + F PD + + D Sbjct: 120 VNALSKRVEVTVRRYSQVHQIAFENGEKVQELDVIGSCGKRNTGTSVHFWPD-ESYFDIP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL + ++KA L V+ + E +++ + GL YL + Sbjct: 179 RFSVTRLTHLLKAKAVLCPGVEIVFKDKLNGTE-------QKWCYADGLTDYLLEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G + +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPQSPFVGTFSGETE---AADWAVLWLPEGGELLAESYVNLIPTVQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNLLPRGVKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L Q+ +A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQHTQDAEQLAEMAIASAQRRMR--AAKKVVRKKLTNGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 AQDLNITELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFPTLVKRGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K IL+ + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVHYALDEGEKSAILDRLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++T ++ L+ K +++R ++QE+ I+ Sbjct: 585 RRLVQLTIDD--ENYQETLSVMDMLLAKKRSEDRRNWLQEKGDSIN 628 >gi|170719135|ref|YP_001784282.1| DNA topoisomerase IV subunit B [Haemophilus somnus 2336] gi|168827264|gb|ACA32635.1| DNA topoisomerase IV, B subunit [Haemophilus somnus 2336] Length = 630 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 252/644 (39%), Positives = 362/644 (56%), Gaps = 23/644 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 3 NYSAQEITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVILY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGISVV Sbjct: 60 KDQSLEVIDNGRGMPVDIHP-TEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ + + V R I+ F G+ + LE + GT + F+P+PK F Sbjct: 119 NALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN- 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L ++ + E + + GL YL + + Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDT-------WLYQDGLSDYLMENVNGYN 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 L+ F G T++ WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 LLPQNPFVGNFS---TNKEAASWALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + + + +DD+ +LSV + + +FAGQTK +L S + V Sbjct: 288 DAMREFCEFRNLLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L QN +A +L + VI +E RLR ++V RK + LPGKLADCS+ Sbjct: 348 VVKDSFSLWLNQNIQDAEELAKMVISSAERRLR--AAKKVVRKKLVSGPALPGKLADCSE 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQARNR +QA+LPLRGKILN +++ +Q++ D+ Sbjct: 406 QDLSKTELFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDIAI 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG ++ LRY KV I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 466 ALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQHGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA DE K+ IL K+ +GK+ + RFKGLGEM +QL+ET MD N R Sbjct: 525 LYRIDLGNEVFYALDENEKESILARL-KNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTR 583 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ + + L ++++R ++Q +D Sbjct: 584 RLVQLTYEPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVD 627 >gi|251792940|ref|YP_003007666.1| DNA topoisomerase IV subunit B [Aggregatibacter aphrophilus NJ8700] gi|247534333|gb|ACS97579.1| DNA topoisomerase IV, B subunit [Aggregatibacter aphrophilus NJ8700] Length = 632 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 253/647 (39%), Positives = 365/647 (56%), Gaps = 24/647 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A+ I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A+ IEV Sbjct: 2 TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L N + V+DNGRG+PV+ HP S +E+I++ LHAGGKF N Y SGGLHGVGIS Sbjct: 59 LHKNQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + V++ R ++ F G + L R GT + F+P+PK F + Sbjct: 118 VVNALSERVDVSIKRNGEVYKIAFENGKKVEDLTVIGICGRRTTGTTVHFKPNPKYFDSE 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L ++ + E + + GL YL + Sbjct: 178 -KFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDT-------WLYQDGLNDYLMEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G+ + + + V WA+ W E E SY N I T GGTH +GLR Sbjct: 230 LVTLPEQPFIGEFKGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++K+ E R + + +DDL +LS+ +++P+FAGQTK +L S + + Sbjct: 287 LLDAMRKFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAMFI 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L + I ++ RLR ++V RK + LPGKLADC Sbjct: 347 GGVVKDAFSLWLNQNIQTAELLADMAISSAQRRLRAT--KKVVRKKLVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S + TELF+VEGDSAGGSAKQAR R QA+LPLRGKILN E++ +Q++ D+ Sbjct: 405 SSQDLNLTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + LRY KV I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 465 AVALGIDPDNDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G YA DE K+ IL+ K KGK + RFKGLGEM QL+ET MD + Sbjct: 524 PPLYRIDLGKDVFYALDESEKEAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDPS 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++T ++++ L+ K A++R ++Q + +D Sbjct: 583 TRRLVQLTFEAQGEESQETMETMDMLLAKKRAEDRKNWLQAKGDQVD 629 >gi|156888537|gb|ABU96673.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 252/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ REV RK + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+KV+IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKVVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSL 652 ET MD R + RV ++ + Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621 >gi|307252887|ref|ZP_07534776.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859676|gb|EFM91700.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 637 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HADNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|261344789|ref|ZP_05972433.1| hypothetical protein PROVRUST_06054 [Providencia rustigianii DSM 4541] gi|282567234|gb|EFB72769.1| DNA topoisomerase IV, B subunit [Providencia rustigianii DSM 4541] Length = 631 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNAEDIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YPDQSLEVIDNGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L + GT + F PD F Sbjct: 120 VNALSKRIEVTVRRDGQVYQIAFENGDKVEDLHVIGTCGKRNTGTSVHFWPDVSYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L V+ + E + + + GL YL ++ Sbjct: 180 -FSVSRLTHNLKAKAVLCPGVQITFKDLLNETE-------QSWCYSDGLTDYLMESVDGY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG+ + +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ETLPVKPFTGELSGEVE---AAQWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRLR--ASKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ + H+++ P Sbjct: 467 VAIGMDPDSEDM-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVREGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G ++ YA DE K +L+ + KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKETHYALDESEKNAVLDRLSRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + +T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTIDDDNYT--ETMSMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|219872242|ref|YP_002476617.1| DNA topoisomerase IV subunit B [Haemophilus parasuis SH0165] gi|219692446|gb|ACL33669.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis SH0165] Length = 633 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 376/650 (57%), Gaps = 26/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+AN I+V Sbjct: 2 SEKRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGFANQIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L VVDNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGI Sbjct: 59 ILHSDNSLEVVDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS+ + +T+ R I++ F+ + + L+ + + GT + F P+PK F Sbjct: 118 SVVNALSESVEITIKRNGEIYTIAFANSVKVEELKVIGSCPKRQTGTTVRFYPNPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ ++ + +E +Y+ GL+ YL L+ Sbjct: 178 P-KFSVSRLRHLLRAKAVLCPKLTINFTD-------HINNTQETWYYEDGLRDYLTDALK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + + +F G+ + V WA++W E E SY N I T GGTH +GLR Sbjct: 230 EYEYLPNPLFVGEVIGETE---AVSWALSWLTEGGEQINESYVNLIPTALGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L + + ++ + + + + +DD+ +LS+ ++EP+FAGQTK +L S A Sbjct: 287 GLFKAMAEFCDFRNLLPKGVKLTADDVWGRCCYVLSLKMQEPQFAGQTKERLSSRQAASY 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VEN+++D F +L QN A +L E I ++ RLR +++V RK + LPGKLAD Sbjct: 347 VENSVKDAFSLWLNQNVQVAEQLAEMAISSAQNRLR--AEKKVVRKKLVSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN +++ + ++ D Sbjct: 405 CISQDLTRTELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVSPDQVLASTEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG ++ LRY KV I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 IAVALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPTLVKNGHVYVA 523 Query: 576 SPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD Sbjct: 524 MPPLYRIDIGKDEVHYALDESEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMD 582 Query: 635 ANKRTLLRVEINKDLNSLK-DTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ + + + + T + ++ L+ K A++R +++Q+R D Sbjct: 583 PNTRRLVQLTLEDNSDDEEVSTFELMDMLLAKKRAEDRKQWLQDRGDEAD 632 >gi|156888535|gb|ABU96672.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888539|gb|ABU96674.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 251/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKDVIFETPIYTDGELEGI---AVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRA 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ REV RK + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSL 652 ET MD R + RV ++ + Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621 >gi|156888541|gb|ABU96675.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888543|gb|ABU96676.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888545|gb|ABU96677.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 251/624 (40%), Positives = 361/624 (57%), Gaps = 20/624 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + + YDAS I++LEGLE VRMRPGMYIG T ++ LHHL E++DN++DE +AG+A I Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFATHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ + +TVVDNGRGIPV+ K + +E + T LHAGGKF Y++SGGLHGV Sbjct: 69 QVFIEADNSITVVDNGRGIPVDIQAK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS +L V V + I Q+F RG ++ LE T + F PDP+IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTG-TTVHFTPDPEIFT 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + FD L K Q A+L+ +K + + E ++E F++ GG+ +Y++ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGME-----QEEHFHYEGGIGSYVEFLN 241 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + + +I E +G VE A+ + + S+ N I T EGGTHE G R Sbjct: 242 DKKEVIFDTPIYTDGELEGI---AVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRT 298 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA+ + + ++ +D+ ++SV P+F GQTKTKL + + + Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKL 453 + F +L++NP A K++E I S+ R+ ++ REV RK + LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKL 418 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKILNV A +KI N++I Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L A+G + + RY+K++IMTDADVDGAHI +LLLT Y+ M ++E +++ Sbjct: 479 RSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVY 538 Query: 574 LISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 + PP++ + G++ Y EE + LE++ G+ K + R+KGLGEM QL Sbjct: 539 IAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEKYS-VGRSKPTVQRYKGLGEMDDHQL 597 Query: 629 KETAMDANKRTLLRVEINKDLNSL 652 ET MD R + RV ++ + Sbjct: 598 WETTMDPENRLMARVTVDDAAEAD 621 >gi|163841158|ref|YP_001625563.1| DNA topoisomerase IV subunit B [Renibacterium salmoninarum ATCC 33209] gi|162954634|gb|ABY24149.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209] Length = 703 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 237/706 (33%), Positives = 340/706 (48%), Gaps = 63/706 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +Y+A + +LEGL+ VR RPGMYIG TD + L H E++DNA+DE + G+ I Sbjct: 3 ATKSDYNARHLSVLEGLDAVRKRPGMYIGSTDSRGLMHCLWEILDNAVDEALGGFGQKIL 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + + V D+GRGIPV+ PK + +E++LT LHAGGKF S+Y SGGLHGVG Sbjct: 63 VILHKDNSVEVHDDGRGIPVDIEPK-TGLTGVEVVLTKLHAGGKFGGSSYAASGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197 SVVNALS L V R + F RG P E Sbjct: 122 ASVVNALSARLDAQVDRGGKTYQMSFRRGEPGVFKETGRSLSPNSTFEPFVQKSVLGVIG 181 Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 + GTRI + D +IF A F L + ++L ++ ++ +A G Sbjct: 182 TTKRGVTGTRIRYWADQQIFTPDAKFSYEELAARARQTSFLVPGLRITIRDERGLANTAG 241 Query: 257 I--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------H 298 P KE F+ GG+ ++ + + G K T Sbjct: 242 ELGPHKEVFHHDGGISEFVDFLAVDAPVTDIWRLHGTASFKETVPVLDDNGHMMPTEVER 301 Query: 299 RGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W + S+ N I T +GG H+ G AL R +K E K Sbjct: 302 DCEVDIALRWGIGYETTMRSFVNIISTPKGGRHQEGFEQALLRTFRKVIEANARKLKAGN 361 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I DD+ +L+V + EP+F GQTK L + + + VE + + Sbjct: 362 DKIEKDDVQAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRAIVAKVVEQEITAKLNSSNRN 421 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + ++ LLE V+ + R+ R +E RK A+ LP KLADC TELFIV Sbjct: 422 DKAQSALLLEKVVSEMKSRISARVHKETQRRKNALETSSLPAKLADCRSEETERTELFIV 481 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+A+ AR+ QA+LP+RGKILNV A + +N + L+Q +G + + Sbjct: 482 EGDSALGTARLARSSDFQALLPIRGKILNVQKASVGDMLSNAECAALIQVVGAGSGRSFD 541 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 E RY K+I+MTDADVDGAHI +LLLT F++ M +I+ ++ PPL R+ Sbjct: 542 IEGARYGKIIVMTDADVDGAHIRTLLLTLFFRYMRPMIDAGRVYAAVPPLHRVEVINHGQ 601 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + +Y + E +L+ +K GK K I R+KGLGEM A QL ET MD RTL R Sbjct: 602 KANELIYTYTENELNDLLKRLEKEGKRYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRR 661 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 V + + + LMG+ R +FI ++ +D + Sbjct: 662 VT----ATHAEAAEKTFELLMGSDVAPRKEFIIAGSAMLDRERLDA 703 >gi|149907751|ref|ZP_01896498.1| DNA topoisomerase IV subunit B [Moritella sp. PE36] gi|149809421|gb|EDM69350.1| DNA topoisomerase IV subunit B [Moritella sp. PE36] Length = 629 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 348/646 (53%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I V+ Sbjct: 2 TQEYNAGSIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHAQSITVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP S +E+IL+ LHAGGKF N +Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVSDDGRGMPVDIHP-VEGVSGVELILSKLHAGGKFSNDSYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDK 219 VVNALS + +T+ R I+ F G +S LE + GT++ F PDP F Sbjct: 118 VVNALSKRVEITIRRGGQIYQIAFEHGEKVSELEVIGTIGIRTTGTKVHFWPDPSYFDSG 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F A RL+ ++KA L + + DK EK + F GL+ YL L+ Sbjct: 178 N-FSAKRLVHNLRAKAVLCPGLSIKF-DDKVNKEK------HAWCFEKGLEDYLMESLDK 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 I F G SY N I T GGTH +GLR L Sbjct: 230 WPTIPETPFVGSFSANNEA-ADWAVIWLPEGGESVTESYVNLIPTVLGGTHVNGLRQGLL 288 Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + R + + DD+ ILSV +++P+FAGQTK +L S V Sbjct: 289 DAMREFCEFRSLLPRGVKLTPDDIWDRCSYILSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L N A L E I +++RL+ ++V RK LPGKL DCS Sbjct: 349 VVKDSFSLWLNSNTDLAELLAEVCINNAQKRLK--ASKKVARKRVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN S ++ ++++ ++ Sbjct: 407 QDPMRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSAQVLASEEVHNISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S LRY KV I+ DAD DG HIA+LL FY+ ++E H F+ PP Sbjct: 467 ALGIDPDSDDI-SGLRYGKVCILADADSDGLHIATLLCALFYKHFRAMVEAGHAFVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE K IL+ + K GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 LYRIDIGKEVFYALDEAEKNGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 R L+R+ I+ + L ++ +R +++++ + + D Sbjct: 586 RRLVRLTIDDADETFAMMDML---LAKKRSADRRAWLEDKGNMLSD 628 >gi|190150573|ref|YP_001969098.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263918|ref|ZP_07545522.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915704|gb|ACE61956.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870783|gb|EFN02523.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 637 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|113460744|ref|YP_718811.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT] gi|112822787|gb|ABI24876.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT] Length = 630 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 253/644 (39%), Positives = 363/644 (56%), Gaps = 23/644 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 3 NYSAQEITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVILY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGISVV Sbjct: 60 KDQSLEVIDNGRGMPVDIHP-TEKVSGVEVILTKLHAGGKFSNKHYEFAGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS+ + + V R I+ F G+ + LE + GT + F+P+PK F Sbjct: 119 NALSERVDIQVKRNGEIYKIAFENGVKVEELEIIGTCGKRTTGTSVHFKPNPKYFDSAN- 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L ++ + E + + GL YL + + Sbjct: 178 FSVSRLRHLLRAKAVLCSGLEIKFIDKINNTEDT-------WLYQDGLSDYLMENVNGYN 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 L+ F G T++ WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 LLPQTPFVGDF---TTNKEAASWALLWLPEGGELLNESYVNLIPTIQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + + + +DD+ +LSV + + +FAGQTK +L S + V Sbjct: 288 DAMREFCEFRNLLPKNVKLTADDIWDRCAYVLSVKMHDAQFAGQTKERLSSRQSAVFVGG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L QN +A +L + VI +E RLR ++V RK + LPGKLADCS+ Sbjct: 348 VVKDSFSLWLNQNIQDAEELAKMVISSAERRLR--AAKKVVRKKLVSGPALPGKLADCSE 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQARNR +QA+LPLRGKILN +++ +Q++ D+ Sbjct: 406 QDLSKTELFLVEGDSAGGSAKQARNREHQAILPLRGKILNTWEVSPDQVLRSQEVHDIAI 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG ++ LRY KV I+ DAD DG HIA+LL F + L++Q H+++ PP Sbjct: 466 ALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA DE K+ IL K+ +GK+ + RFKGLGEM +QL+ET MD N R Sbjct: 525 LYRIDLGNEVFYALDENEKESILARL-KNKRGKLNVQRFKGLGEMNPNQLRETTMDPNTR 583 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ + + L ++++R ++Q +D Sbjct: 584 RLVQLTYKPHEEDVSTLELMDMLLAKKRSEDRKIWLQNNGDQVD 627 >gi|77361502|ref|YP_341077.1| DNA topoisomerase IV subunit B [Pseudoalteromonas haloplanktis TAC125] gi|76876413|emb|CAI87635.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas haloplanktis TAC125] Length = 629 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 238/643 (37%), Positives = 346/643 (53%), Gaps = 22/643 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + NY+A +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 SQQNYNAEAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEAMAGHATRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V D+GRG+P++ HP+ +E+I T LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHEDNSLEVSDDGRGMPIDIHPE-EGIPGVELIFTKLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + F G + L V + GT + F PD F Sbjct: 118 SVVNALSTRVEVTVRRDAQQYRMAFENGEKVEDLSVIGVVGKRNTGTTVRFWPDVSYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + +L + ++KA L ++ + E +E+++ GLK YL ++ Sbjct: 178 PN-YSITKLNHLLKAKAVLCPGLRIKFVNK-------QTKETQEWFYETGLKDYLIEAIK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + F G+ SY N I T +GGTH +GLR L Sbjct: 230 GYETLPDVPFVGEFSS-SIEGADWALIWLPEGGESIAESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + DD+ +LSV +++P+FAGQTK KL S V Sbjct: 289 LEAMREFCEFRNLLPRGVKLTPDDIWERCSYVLSVKMQDPQFAGQTKEKLSSRSCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L ++ A +L E I ++ RLR ++V RK LPGKL DCS Sbjct: 349 GVVKDSFSLWLNEHTDIAEQLSELCISNAQRRLR--AAKKVIRKRVTAGPALPGKLTDCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I +Q++ D+ Sbjct: 407 AADNDRTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VALGIDPDSDDLTA-LRYNKICILADADSDGLHIATLLCALFVRHFKPLVKAGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PLFRI G YA DE+ K IL + K GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLFRIDIGKDVYYALDEDEKTGILARIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPN 585 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 R L+++ ++++ +++ L ++ +R +++++ + Sbjct: 586 TRRLVQLTLDEEELTMEMMDML---LAKKRSADRRQWLEDHGN 625 >gi|238755475|ref|ZP_04616815.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473] gi|238706316|gb|EEP98693.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473] Length = 631 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 245/646 (37%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+I LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVIDDGRGMPVDIHPE-EGVPAIELIFCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + V V R ++S F G + L+ + GT + F PD + F D Sbjct: 120 VNALSRRVEVNVRRDGQVYSMAFENGDKVQDLQVIGTCGKRNTGTSVHFWPD-ESFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLSHLLKAKAVLCPGVEIVFKDLLNNTE-------QRWCYADGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G ++WA+ W E + SY N I T +GGTH +GLR L Sbjct: 232 ITLPEVPFVGSFAGDTE---AIDWALLWLPEGGDLLTESYVNLIPTMQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ P Sbjct: 467 VAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFSSLVRGGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++ + ++ T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTVDD--SDIEKTMAVMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|108809114|ref|YP_653030.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua] gi|167399281|ref|ZP_02304805.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108781027|gb|ABG15085.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua] gi|167051785|gb|EDR63193.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 631 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 248/648 (38%), Positives = 357/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+ I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHTRRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I+ D ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLTISDDDIDHTLA--VMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|226356526|ref|YP_002786266.1| DNA topoisomerase [Deinococcus deserti VCD115] gi|226318516|gb|ACO46512.1| putative DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase, subunit B) [Deinococcus deserti VCD115] Length = 674 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 251/662 (37%), Positives = 350/662 (52%), Gaps = 22/662 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYI-GGTDEKALHHLFSEVIDNAMDEVIAGY 93 ++ NY A I +LEG++ VR RPGMY+ GGT H L +E+IDN +DE +AG+ Sbjct: 18 NSSSQGKTNYTADDISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGF 77 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V + +G TV D+GRGIPV+ K + +E+I + LHAGGKF Y++SGG Sbjct: 78 ATEVHVIMHADGSATVTDDGRGIPVDIM-KSKGRPAIEVIFSELHAGGKFGGGAYKVSGG 136 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRP 211 LHGVG +VVNALS L V V + I +F +G + PL+ T ++F+P Sbjct: 137 LHGVGSTVVNALSTFLDVKVNKGGKIHHIRFEQGQLVQPLQVLGDTPAEITWATSVSFQP 196 Query: 212 DPKIFGDK-AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 DP IF + FD R+ + AYL+G K ++ + E E F+ GG+ Sbjct: 197 DPSIFKEFDNQFDYTRIRNRLRELAYLTGL-KIVVRDERTELHAGMVKE-EIFHEKGGIA 254 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 + + + + + + + K V + A + I +Y N I T +GGT Sbjct: 255 NFARALVVDDNKLLYDQPIVMRGKHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGTP 314 Query: 331 ESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G + A TR + KYA + DDL+ ++SV + EP+F Q K KL+ Sbjct: 315 LTGFKTAYTRILNKYARDKNLIKSGHPVPSGDDLLEGIYCVVSVKLGEPQFESQAKVKLL 374 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKL 447 + +AQ V + + F +L +NP ++E E + R RK V R + Sbjct: 375 NSEAQTAVNAVVGEKFAEFLEENPRVGKTIVEKAAEAARAREAARKARDIVRRSNPLEND 434 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS +E+FIVEG SAGGSAK R R QA+LPLRGKILNV A KI Sbjct: 435 DLPGKLADCSSQDPAESEMFIVEGISAGGSAKGGRERRFQAILPLRGKILNVEKADLNKI 494 Query: 508 RNNQQIMDLVQALG-----CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 N +I L+ A+G R + +LRY K+IIMTDAD+DG HIA+LLLTFFY+ Sbjct: 495 LKNAEIRALIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHIATLLLTFFYRY 554 Query: 563 MYDLIEQKHLFLISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 M ++E +L++ PPL+RI G K Y + E + + K GK K +I RFKGL Sbjct: 555 MRPVVEAGYLYIAQPPLYRIMVGREKKGTYLYTNEDLKIHVARATKEGK-KFDIQRFKGL 613 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL +T M+ R L RV+I L + LMGT+ R FIQE A F Sbjct: 614 GEMNADQLWDTTMNPETRALKRVQIED----LIVANEVFENLMGTEVAPRKTFIQENARF 669 Query: 681 ID 682 + Sbjct: 670 AE 671 >gi|52424933|ref|YP_088070.1| DNA topoisomerase IV subunit B [Mannheimia succiniciproducens MBEL55E] gi|52306985|gb|AAU37485.1| GyrB protein [Mannheimia succiniciproducens MBEL55E] Length = 632 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 259/647 (40%), Positives = 371/647 (57%), Gaps = 24/647 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+AN IEV Sbjct: 2 ANNYSAEDITVLKDLEPVQLRPGMY---TDTSRPNHLGQEVIDNSVDEALAGFANKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+DNGRG+PV+ HP S +E+IL+ LHAGGKF N YE SGGLHGVGIS Sbjct: 59 LHKDQSLEVIDNGRGMPVDIHP-TEKVSGIELILSKLHAGGKFSNKNYEYSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + V V R I+ FS G + L+ R GT + F+P+PK F Sbjct: 118 VVNALSELVEVIVKRDGQIYKIVFSNGQKIEELQVIGTCGRRNTGTTVRFKPNPKYFDSD 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL + ++KA L ++ ++ E E + + GL YL ++ Sbjct: 178 -KFSVTRLRHLLRAKAVLCSGLEIKFTDKVNDTE-------ESWCYQDGLSDYLIEAVQG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 YNALPQTPFIGDFSAD---SEAVSWALLWLPEGGELIAESYVNLIPTIQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + +++DD+ +LS+ + +P+FAGQTK +L S + + Sbjct: 287 LLDAMREFCEFRNLLPRGVKLVADDIWDRCAYVLSLKMHDPQFAGQTKERLSSRQSAVFI 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN +L E I ++ RLR ++V RK + LPGKLADC Sbjct: 347 GGVVKDAFSLWLNQNVEIGQQLAELAINSAQRRLR--ASKKVVRKKLVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 SQ TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+++ ++++ ++ Sbjct: 405 SQQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSDQVLGSEEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+LL F + L++Q H+F+ Sbjct: 465 AIALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQQGHVFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DE K+ IL+ K +GK + RFKGLGEM SQL+ET M+ N Sbjct: 524 PPLYRIDLGKEVFYALDESEKEGILDRL-KSKRGKPNVQRFKGLGEMNPSQLRETTMEPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +D ++ +T + ++ L+ K A++R ++Q + +D Sbjct: 583 TRRLVQLTYEQDETNMTETFELMDMLLAKKRAEDRKNWLQTKGDQVD 629 >gi|257068604|ref|YP_003154859.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810] gi|256559422|gb|ACU85269.1| DNA topoisomerase IV subunit B [Brachybacterium faecium DSM 4810] Length = 705 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 233/704 (33%), Positives = 346/704 (49%), Gaps = 61/704 (8%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + + YDA ++++LEGLE VR RPGMY+G TD + L H E++DNA+DE + GY Sbjct: 2 STTSTAKKSAYDARNLQVLEGLEAVRKRPGMYVGSTDSRGLMHCLWEILDNAVDEALGGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IEV L + + V D GRG+PV+ P+ + +E++ T LHAGGKF +Y SGG Sbjct: 62 GDSIEVILHPDHSVEVRDTGRGVPVDVEPR-TGLTGVEVVYTKLHAGGKFGGGSYAASGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------ 201 LHGVG SVVNALS L V V R I++ F RG P + + Sbjct: 121 LHGVGASVVNALSGRLDVEVDRGGKIYAMSFRRGQPGEFADADGPSPDSEFTPLTGPDAL 180 Query: 202 ---------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 GTR+ + DP+IF + F L + ++ A+L +K + + Sbjct: 181 RVVGKAKRGVTGTRVRYWADPQIFVKGSHFSLDDLTRRSRQTAFLVPGLKLSVTDHR-PE 239 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296 P F + GG+ +++ +++ + G E Sbjct: 240 ASPDQPATRTFKYDGGISEFVEYLAQDQKITDVIRLRGTGEYTETIPVLDKNGHMVSTDV 299 Query: 297 THRGTVEWAIAW-CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQ 350 V+ A+ W + + + S+ N + T +GGTH +G AL + ++K E Sbjct: 300 ERSCEVDIALRWGADFDATVRSFVNIVATPKGGTHVTGFEQALVKTVRKQVENHARRVKF 359 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 N + I DD + ++SV I EP+F GQTK L + + V + D +L Sbjct: 360 NAKNEKIEKDDTLAGLTAVVSVRIDEPQFEGQTKEVLGTPAIRAIVAKVVEDRLTEFLTS 419 Query: 411 NPIEATKLLEWVIER----SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTE 465 + VI++ R+ R +E RK A+ +P KLADC + +E Sbjct: 420 TTKGEKEQAALVIDKVVSEMRARIAARMHKEVSRRKNALESSTMPTKLADCRTHDVDRSE 479 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 LFIVEGDSA G+AK AR+ +QA+LP+RGKILN A + N + ++Q +G + Sbjct: 480 LFIVEGDSALGTAKNARSSEHQALLPIRGKILNTQKASVTDMLKNTECAAIIQVIGAGSG 539 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--- 582 + E RY K+I+MTDADVDGAHI +LLLT F++ M L+E ++ PPL R+ Sbjct: 540 RTFDLEAARYGKIIMMTDADVDGAHIRTLLLTLFHRYMRPLVEAGRVYAAVPPLHRVEII 599 Query: 583 ---TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638 + + VY + E K+L+ ++ GK K I R+KGLGEM A QL +T MD R Sbjct: 600 HGGKKKNELVYTYSEAELHKLLKNLERRGKRYKEPIQRYKGLGEMDADQLADTTMDPGHR 659 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 TL RV I + LMG++ R +FI E A +D Sbjct: 660 TLRRVRIED----AEAASAVFELLMGSEVAPRKQFIIEGAEELD 699 >gi|182623989|ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens D str. JGS1721] gi|177910882|gb|EDT73236.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens D str. JGS1721] Length = 648 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++NYD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 2 SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V L+ + +TV+DNGRGIP HP K+ +E++ T LH GGKF+N Y+ SGGLHGV Sbjct: 62 KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206 G +VVNALS L V V + I+ Q+F G P++PLE + + GT+ Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF PD ++F + F + + Q A+ + ++ +++ +Y Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324 GL ++ E+++ + + EK+ + E + + + I SY N I T Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL I+ + I P F GQ Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A + + F H++ N AT ++ ++ + R + +K + RK Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413 Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533 Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL+L PPL+++ + K +YA+ ++ +++ ++ K I RF Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET ++ RTL++V I + ++ LMG R ++ + Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645 Query: 678 ASF 680 A F Sbjct: 646 AEF 648 >gi|330828212|ref|YP_004391164.1| DNA topoisomerase IV subunit B [Aeromonas veronii B565] gi|328803348|gb|AEB48547.1| DNA topoisomerase IV, B subunit [Aeromonas veronii B565] Length = 636 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 250/651 (38%), Positives = 363/651 (55%), Gaps = 28/651 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARNLEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHEDQSLEVIDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALSD + VTV R ++ F RG + L R GTR+ F P F Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGEKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +L + ++KA L + + K E+ + GLK YL ++ Sbjct: 178 -KFSVTKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + + + F G + + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 FTCLPEQPFIGSFSSE---QSAVDWALCWLPEGGECLAESYVNLIPTAQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ ILS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F YL N A ++ E I ++ R+R + V RK + LPGKL DC Sbjct: 347 SGVVKDAFSLYLNSNTELAEQIAEICISSAQRRMR--AAKTVVRKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 NCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SVAIGLDPDSEDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFRTLVEKGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K +L+ + + KGK+ ++RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQD----SINKLMGTK-ADERFKFIQERASFI 681 N R L+++ + S D D ++ L+ K A +R ++++E+ + Sbjct: 584 NTRRLVQLTMEPAGESEGDAADETLQLMDMLLAKKRASDRREWLEEKGNLA 634 >gi|168208771|ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens B str. ATCC 3626] gi|170713087|gb|EDT25269.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens B str. ATCC 3626] Length = 648 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++NYD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 2 SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V L+ + +TV+DNGRGIP HP K+ +E++ T LH GGKF+N Y+ SGGLHGV Sbjct: 62 KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206 G +VVNALS L V V + I+ Q+F G P++PLE + + GT+ Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF PD ++F + F + + Q A+ + ++ +++ +Y Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324 GL ++ E+++ + + EK+ + E + + + I SY N I T Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL I+ + I P F GQ Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A + + F H++ N AT ++ ++ + R + +K + RK Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413 Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533 Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL+L PPL+++ + K +YA+ ++ +++ ++ K I RF Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET ++ RTL++V I + ++ LMG R ++ + Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645 Query: 678 ASF 680 A F Sbjct: 646 AEF 648 >gi|157963372|ref|YP_001503406.1| DNA topoisomerase IV subunit B [Shewanella pealeana ATCC 700345] gi|157848372|gb|ABV88871.1| DNA topoisomerase IV, B subunit [Shewanella pealeana ATCC 700345] Length = 631 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 243/648 (37%), Positives = 355/648 (54%), Gaps = 26/648 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+ Sbjct: 3 AMTNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHASRID 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 60 VILHADNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 118 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS + +TV R ++ F G + L R GT + F PD F Sbjct: 119 ISVVNALSSRVEITVRRNAEVYEMAFEHGEKVEDLHVTGTCGRRNTGTSVHFWPDASYFD 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ++L + ++KA L ++ + E +E+++ GL+ YL++ Sbjct: 179 SGN-FSISKLTYLLKAKAVLCPGLRIKFVNK-------QTNETQEWFYESGLEDYLRSSF 230 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLR 335 + + F G +WAI W E E SY N I T GGTH +G R Sbjct: 231 KGVPTLPEVPFVGSFAGN---LEAADWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFR 287 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R I + +D+ + ILS+ +++P+FAGQTK KL S Sbjct: 288 QGLLESMREFCEFRNLMPRGIKLTPEDIWDRSTFILSIKMQDPQFAGQTKEKLSSRQCAA 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V +RD F +L N +A L + I +++RL+ ++V RK LPGKL Sbjct: 348 FVSGIVRDAFSLWLNTNTEQAEALADMCINNAQKRLK--AAKKVARKRITSGPALPGKLT 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DCS ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ Sbjct: 406 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 466 DISVAIGCDPDSADI-SELRYGKICILADADSDGLHIATLLCALFMKHYRVLVEQGHIYV 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPLFRI G YA DE K IL+ KGK++++RFKGLGEM QL+ET M Sbjct: 525 AMPPLFRIDIGKDVFYALDEAEKNGILDRITAEKRKGKVQVTRFKGLGEMNPLQLRETTM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 D N R L+++ I+ ++L L ++ +R +++ + Sbjct: 585 DPNTRRLVQLTIDDAEDTLALMDML---LAKKRSGDRKIWLETKGDLA 629 >gi|110801950|ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridium perfringens SM101] gi|110682451|gb|ABG85821.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens SM101] Length = 648 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 226/663 (34%), Positives = 353/663 (53%), Gaps = 36/663 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++NYD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 2 SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V L+ + +TV+DNGRGIP HP K+ +E++ T LH GGKF+N Y+ SGGLHGV Sbjct: 62 KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206 G +VVNALS L V V + I+ Q+F G P++PLE + + GT+ Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF PD ++F + F + + Q A+ + ++ +++ +Y Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324 GL ++ E+++ + + EK+ + E + + + I SY N I T Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL I+ + I P F GQ Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A + + F H++ N AT ++ +E + R + +K + RK Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALEAAARREKIKKINDAERKK 413 Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533 Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL+L PPL+++ + K +YA+ ++ +++ ++ K I RF Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET ++ RTL++V I + ++ LMG R ++ + Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645 Query: 678 ASF 680 A F Sbjct: 646 AEF 648 >gi|307129110|ref|YP_003881126.1| Topoisomerase IV subunit B [Dickeya dadantii 3937] gi|306526639|gb|ADM96569.1| Topoisomerase IV subunit B [Dickeya dadantii 3937] Length = 631 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 362/649 (55%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L R GTR+ F PD F Sbjct: 120 VNALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDASFFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L + ++KA L V+ + E + + + GGL YL + Sbjct: 180 -FSVLSLTHLLKAKAVLCPGVEIVFKDGVNDTE-------QRWCYQGGLSDYLCEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G VEWA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 PTLPEKPFIGTIPGDTE---AVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + ++D+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQAAEQLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 SQDLSKTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY KV I+ DAD DG HIA+LL F + L++ H+ + P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K ILE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKAGILEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 R L+++ IN+ ++ T +++ L+ K A++R ++QE+ + + Sbjct: 585 RRLVQLTINE--QDIEQTLATMDMLLAKKRAEDRRNWLQEKGDKAE-LD 630 >gi|110800719|ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridium perfringens ATCC 13124] gi|168205877|ref|ZP_02631882.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens E str. JGS1987] gi|168212894|ref|ZP_02638519.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens CPE str. F4969] gi|168215696|ref|ZP_02641321.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens NCTC 8239] gi|169343680|ref|ZP_02864679.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C str. JGS1495] gi|110675366|gb|ABG84353.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens ATCC 13124] gi|169298240|gb|EDS80330.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C str. JGS1495] gi|170662593|gb|EDT15276.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens E str. JGS1987] gi|170715591|gb|EDT27773.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens CPE str. F4969] gi|182382313|gb|EDT79792.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens NCTC 8239] Length = 648 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++NYD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 2 SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V L+ + +TV+DNGRGIP HP K+ +E++ T LH GGKF+N Y+ SGGLHGV Sbjct: 62 KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206 G +VVNALS L V V + I+ Q+F G P++PLE + + GT+ Sbjct: 121 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF PD ++F + F + + Q A+ + ++ +++ +Y Sbjct: 180 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324 GL ++ E+++ + + EK+ + E + + + I SY N I T Sbjct: 234 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL I+ + I P F GQ Sbjct: 294 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A + + F H++ N AT ++ ++ + R + +K + RK Sbjct: 354 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 413 Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 414 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 474 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 533 Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL+L PPL+++ + K +YA+ ++ +++ ++ K I RF Sbjct: 534 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET ++ RTL++V I + ++ LMG R ++ + Sbjct: 590 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 645 Query: 678 ASF 680 A F Sbjct: 646 AEF 648 >gi|254238319|ref|ZP_04931642.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719] gi|126170250|gb|EAZ55761.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719] Length = 629 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G S LE V + GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGVSDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKEIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|107104066|ref|ZP_01367984.1| hypothetical protein PaerPA_01005139 [Pseudomonas aeruginosa PACS2] gi|116053115|ref|YP_793435.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|296391808|ref|ZP_06881283.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAb1] gi|313109973|ref|ZP_07795899.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016] gi|115588336|gb|ABJ14351.1| topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|310882401|gb|EFQ40995.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016] Length = 629 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 357/647 (55%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G S LE V + GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKEIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|90407086|ref|ZP_01215275.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3] gi|90311808|gb|EAS39904.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3] Length = 629 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 352/646 (54%), Gaps = 26/646 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y++ SI +L GL+PVR RPGMY T+ +HL EVIDN++DE +AG+A I+V Sbjct: 2 SEQYNSDSIEVLNGLDPVRHRPGMY---TETNRPNHLAQEVIDNSVDEALAGHATSIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V D+GRG+PV+ HP+ S +E+I LHAGGKF Y ISGGLHGVGIS Sbjct: 59 LHEDQSIEVTDDGRGMPVDIHPE-EKISGVELIFCKLHAGGKFSGKNYAISGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V + R ++ F G + L++ + + GT + FRPDP + D Sbjct: 118 VVNALSARVDVNIRRNAKVYHIAFEHGEKVEELKEIDTCGKRNTGTSVHFRPDP-RYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F +RLL + ++KA L + + + + GL YL + Sbjct: 177 AKFSVSRLLHLLKAKAVLCPGLSIKFKD-------RVNKNNYHWCYKDGLNDYLLEAVHE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 L+ + F G+ G TV+WAI W E SY N I T +GGTH +G R Sbjct: 230 NELLPATPFVGQLMANGE---TVDWAIVWLPEGGNSLSESYVNLIPTIQGGTHVNGFRQG 286 Query: 338 LTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ + + R I + +D+ ILSV I+EP+FAGQ K +L S + Sbjct: 287 LLDAMREFCDIRSLLPRGIKLSPEDIWDKCAYILSVKIKEPQFAGQMKERLSSRQCVAFI 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L + EA +L + I+ ++ R R K ++V RK + LPGKL DC Sbjct: 347 CGVVKDAFSLWLNAHVGEAEELALFCIQNAQIRSR--KSKKVARKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA+LPLRGKI N S+ I N+++I ++ Sbjct: 405 SCQEPERGELFLVEGDSAGGSAKQARDREFQAILPLRGKIKNTWEDDSDVILNSEEIYNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+L+ F + +++ H ++ Sbjct: 465 SIAIGIDPASNDL-SGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHFYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE K+ ILE K+ + KI + RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDAGKEVFYALDEGEKEIILERIANKNKRSKINVQRFKGLGEMNPDQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ L+ L +A +R ++++ + Sbjct: 584 NTRRLVQLTTEDSEKMLEVMDML---LAKKRAGDRKEWLETSGDML 626 >gi|300741336|ref|ZP_07071357.1| DNA gyrase, B subunit [Rothia dentocariosa M567] gi|300380521|gb|EFJ77083.1| DNA gyrase, B subunit [Rothia dentocariosa M567] Length = 700 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 237/703 (33%), Positives = 343/703 (48%), Gaps = 62/703 (8%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AGY I++ Sbjct: 2 AASNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGYGQSIQI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V D+GRGIP + P+ S LE++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ILYRDGSVEVQDDGRGIPTDVEPR-TGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202 SVVNALS L V V R + + F G+P + Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVGR 180 Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 GTR+ + DP+IF A F L+ + ++L ++ ++ I G Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPGE 240 Query: 258 --PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299 P +E F GG+ +++ + ++ F+G+ + Sbjct: 241 FGPYEEVFQHDGGISEFVEFLAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEVDRE 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355 V+ A+ W S+ N I T +GGTH +G L + +K+ K + Sbjct: 301 CEVDIALRWGIGYETTIRSFVNIIATPKGGTHATGFEQGLLKTFRKHLADNARKFKVGND 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN---- 411 I DD + +L+V + EP+F GQTK L + ++ V + D L Sbjct: 361 KIEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTARAE 420 Query: 412 PIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 +A L E V+ + R+ R +E RKTA+ +P KL DC +ELFIVE Sbjct: 421 KAQAAALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+A+ AR+ + QA+LP+RGKILN A + N + L+Q +G + + Sbjct: 481 GDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRTFEL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QG 585 E RY KVI+MTDADVDGAHI +LLLT Y+ M LIE ++ PPL R+ + Sbjct: 541 EAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVINRGKP 600 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + VY + E ++L + + GKG K I R+KGLGEM A QL ET MD R L R+ Sbjct: 601 NEMVYTYSERQLHELLSQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 I + + + + LMG + R +FI A + D++ Sbjct: 661 IED----AEAAEQAFSLLMGAEVAPRKEFIIAGAHQLDQDNID 699 >gi|56461054|ref|YP_156335.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR] gi|56180064|gb|AAV82786.1| DNA topoisomerase IV subunit B [Idiomarina loihiensis L2TR] Length = 630 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 359/646 (55%), Gaps = 28/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y + SI +L GLEPV+ RPGMY TD +HL EVIDN++DE +AG+A + V L Sbjct: 3 DYKSDSIEVLNGLEPVQRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAKSLLVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L D+GRG+PV+ HP+ +E+I++ LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 PDQSLETTDDGRGMPVDIHPE-EGVPGVELIMSKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + +T+ R ++ + G +S LE V + GTR+ F PDP+ F Sbjct: 119 NALSKRVELTIKRDGQVYEMAYENGDKVSELEVTGTVGKRNTGTRVHFWPDPQYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +L + ++KA L +K + + E +++ GL YL +++ Sbjct: 178 FSVTKLKHILRAKAVLCPGLKITFRNKIDDTEDT-------WFYQDGLTDYLVEAVKDVP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + F G + V+WA+ W E E SY N I T GGTH +GLR L Sbjct: 231 TLPEMPFDGSFS---SQTEGVDWAVTWLPEGGEGVSESYVNLIPTTLGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ ILS +++P+FAGQTK +L S + V Sbjct: 288 EAMREFCEFRNLLPRGVKLTPEDVWERCSYILSTKMQDPQFAGQTKERLSSRQSASFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +A L + I ++ RL+ ++V RK + LPGKL DCS Sbjct: 348 VVKDAFSLWLNEHTDQAELLADVCISNAQRRLK--ASKKVVRKKVTQGPALPGKLTDCSS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN E+I +Q+I D+ Sbjct: 406 QEPGRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDPEQILGSQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S + LRY K+ I+ DAD DG HIA+LL F + L+E H+F+ PP Sbjct: 466 AVGVDPNSVDL-DKLRYGKICILADADSDGLHIATLLCALFVKHFRPLVEHGHIFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+R+ G + YA DE KQ IL+ + KGK+ + RFKGLGEM L+ET MD N Sbjct: 525 LYRVDVGKEVFYALDEAEKQGILDRIEAEKRKGKVNVQRFKGLGEMNPLTLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ + ++ ++ L+ K A +R +++ + + D Sbjct: 585 RRLVQLTIDDG----EVMEELMDMLLAKKRAGDRRTWLESKGNMAD 626 >gi|294815531|ref|ZP_06774174.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC 27064] gi|294328130|gb|EFG09773.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC 27064] Length = 739 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 241/726 (33%), Positives = 359/726 (49%), Gaps = 53/726 (7%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62 D L + Q + ++ +P + + NY A + +LEGLE VR RP Sbjct: 15 DRRRALPHRATSEIQRGANRVTAETSVPSTTLLTAERDGSNYTARHLLVLEGLEAVRKRP 74 Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 GMYIG TD + L H E+IDN++DE + GY + IEV L +G + V DNGRGIPV+ P Sbjct: 75 GMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEP 134 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K S +E+++T LHAGGKF +Y SGGLHGVG SVVNALS L V V R + + Sbjct: 135 K-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNGSTHAI 193 Query: 183 KFSRGIPLSPLEKKEKV---------------RNKRGTRITFRPDPKIFGDKAGFDAARL 227 F RG+P E+ + + GTR+ + D +IF +A L Sbjct: 194 SFRRGVPGIFTEQGPDAPFDPANGLRKGKRVPKTRTGTRVRYWTDRQIFLKEARLALETL 253 Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287 + + A+L + ++++A + +E F F GG+ + + +++++ Sbjct: 254 HQRARQTAFLVPGLTIVVRDERDLAGEG--KSQEIFRFDGGISEFCEYLAQDKAVCDVLR 311 Query: 288 FTGKTE----------------KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTH 330 TG+ + T V+ A+ W + S+ N I T +GGTH Sbjct: 312 LTGQGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGTGYDTAVRSFVNIIATPKGGTH 371 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G ++T+ + + + R DD + +++V + EP+F GQTK L Sbjct: 372 VTGFERSVTKTVNEVLRSAKLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLG 431 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTA 443 + A R V N + +L +A V+E+ R+ + RKTA Sbjct: 432 TSAANRIVSNVVARELKAFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTA 491 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LP KLADC + +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + Sbjct: 492 LETSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSS 551 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N + ++Q +G + + + RY K++++ DADVDGAHI LLLT F + M Sbjct: 552 VSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYM 611 Query: 564 YDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISR 616 ++E +F PPL RI +G K VY + + ++ L EF++ G + K I R Sbjct: 612 RPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDSIQR 671 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM A QL ET MD RTL R+ I L + + LMG + R +FI Sbjct: 672 YKGLGEMDADQLAETTMDPRHRTLRRINIGD----LDAAEQVFDLLMGNEVAPRKEFITS 727 Query: 677 RASFID 682 A+ +D Sbjct: 728 SAATLD 733 >gi|149377750|ref|ZP_01895484.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893] gi|149357976|gb|EDM46464.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893] Length = 631 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 366/649 (56%), Gaps = 28/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 SQKQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G L+V D+GRG+PV+ H + +E+ILT LHAGGKF Y SGGLHGVG+ Sbjct: 59 ILHSDGSLSVEDDGRGMPVDMHKEH-GVPGVELILTRLHAGGKFSQGNYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L V++ R + F+ G + L + V + GTR+ F PDP F Sbjct: 118 SVVNALSTHLEVSIKRDGQLHQMTFANGHKETDLTVVDSVGKRNTGTRLKFTPDPSYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL ++KA L + + + +K+E+ + GGL+ YL+T+L Sbjct: 178 P-KFSVSRLRHNLRAKAVLCPGLNVTFLQE-------HTGDKDEWCYEGGLRDYLRTELA 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + E FTG + V+WA W E E + SY N I T +GGTH +GLR Sbjct: 230 DIEAVPLEPFTGSFSGN---KEAVDWAFQWLPEGGEAVMESYVNLIPTAQGGTHVNGLRT 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +D+ +LS ++EP+F+GQTK +L S +A Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERCAYVLSFKMQEPQFSGQTKERLSSREAAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F +L Q+ A L E I ++ RLR ++V RK LPGKLAD Sbjct: 347 ISGVVKDAFSLWLNQHTDIAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + + +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN S +I +Q++ D Sbjct: 405 CSGSDTNRSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSSEILASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S E LRY K+ I+ DAD DG HIA+LL F + ++ H+F+ Sbjct: 465 IAVAIGVDPGSDKL-EGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ G ++ YA DE KQ I++ +GKI ++RFKGLGEM QL+ET M Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRLAAENRRGKISVTRFKGLGEMNPLQLRETTMA 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+ + I DT ++ L+G K A +R +++ + D Sbjct: 584 PDTRRLVMLTIEDG----DDTDSRMDMLLGKKRASDRRTWLETYGNMAD 628 >gi|254497819|ref|ZP_05110586.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12] gi|254352950|gb|EET11718.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12] Length = 629 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 246/646 (38%), Positives = 355/646 (54%), Gaps = 25/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A I V+ Sbjct: 4 SENYTAQAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFATHITVT 60 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 61 LHEDGSVEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALSD L VT+ R ++ F+ G L + + + GT I F P+ K F Sbjct: 120 VVNALSDRLEVTIKRNGIVYQMSFANGDKTCELNEIGITKKRDTGTTIRFWPNAKYFDTT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E + + GL Y+ L + Sbjct: 180 R-ISIKHLTHILRAKAVLCTGLSMTFINKTNNEE-------SHWCYEHGLVDYMNQSLGD 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWA--IAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 + E F G+ + TV+WA + SY N I T +GGTH +G R Sbjct: 232 GDYLPEEPFAGEFKSDD---ATVDWALVWSNGASAGFSESYVNLIPTIQGGTHVNGFRSG 288 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L + ++ EL R + + +DDL +LS+ ++EP+FAGQTK +L S V Sbjct: 289 LFEAMNEFCELRNLLPRGVKLAADDLWEPCQYVLSIKMKEPQFAGQTKERLSSRQISAVV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N ++D F +L Q+ + + IER++ RL+ + ++V RK + LPGKLADC Sbjct: 349 SNVVKDAFALWLNQHRNQGEAIASLAIERAQRRLK--QAKQVARKRVSQGPALPGKLADC 406 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 Q ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 407 LQTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNSWEVDSSQVLASQEIHDI 466 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY KV I+ DAD DGAHIA+L+ F + L++ H+F+ Sbjct: 467 SVAIGVDPGSIDL-TGLRYGKVCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 525 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G YA D+E K ++L + K K + RFKGLGEM QL+ET MD N Sbjct: 526 PPLYRIDAGKIVHYALDDEEKNRLLSHLAQTSKAKANVQRFKGLGEMNPIQLRETTMDPN 585 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ + + + +NK +A +R +++ + + + Sbjct: 586 TRRLVQLTLEDEEGAEAIMDMMLNK---KRAGDRKIWLETKGNLAE 628 >gi|320104795|ref|YP_004180386.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644] gi|319752077|gb|ADV63837.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644] Length = 652 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 274/661 (41%), Positives = 385/661 (58%), Gaps = 20/661 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 S + +AS NY + SI +LEGLEPVR RPGMYIGG D+ LHHL E++DNA+DEV+ Sbjct: 5 TSSPGSRSAASTNYTSESITVLEGLEPVRKRPGMYIGGLDKAGLHHLCWEIVDNAIDEVM 64 Query: 91 AGYANLIEVSLDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 G+A+ I V L+ +G L+V DNGRGIPV+ H K KS LE+I TTLHAGGKFDN+ Y+ Sbjct: 65 NGHASRIVVELEADGRTLSVSDNGRGIPVDLHAK-TGKSALEVIFTTLHAGGKFDNNAYK 123 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 ++GGLHGVG SVVNALS+ L V V R FSQ + RG P S + K + GT + F Sbjct: 124 VAGGLHGVGASVVNALSERLEVKVKRDGFHFSQTYQRGKPTSEVVK-GEPARGTGTTVRF 182 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD +IF D+ FD + + KAYL+ + + K + E+ GG+ Sbjct: 183 TPDREIFHDQV-FDPVLIGERLDIKAYLNKGLSIQFVDRK-------AGTQVEYRHDGGV 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRG-TVEWAIAWCE-ENPEITSYCNTILTDEG 327 +L R+ + E+ G + A+AW E + + S+ NTI T +G Sbjct: 235 ADFLNEIHRRRNDVKVAPTVFVLERDDPREGLRLHLALAWTEATDEHVLSFVNTIPTRDG 294 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE G+R A+++ ++K+ K+ + I +D+ +LSV I EP+F GQTK + Sbjct: 295 GTHEQGMREAVSKAVRKFFADHDLLKKGMEIKGEDIREGLTAVLSVNIAEPQFQGQTKGR 354 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK--QREVNRKTAI 444 L + + + VE+A+R + + +N + E VI+ R R + + + Sbjct: 355 LNNPEVRALVESAIRPRLEDFFHKNKSVGEAVAERVIQAWRAREASRAAANQARRKSPVV 414 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 +L LPGKL DC + +ELF+VEGDSAGGSAKQ R+R QA+LPL+GK+LN AG Sbjct: 415 GRLTLPGKLHDCDSSKVEESELFLVEGDSAGGSAKQGRDRRIQAILPLKGKVLNAEQAGR 474 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ +N+++ D+V ALGC QY LRY K+I++TDAD DG HIA+LLLTFFY+ + Sbjct: 475 AKVLDNKELSDIVSALGCGMDDQYDPSRLRYGKIILLTDADSDGHHIATLLLTFFYRHLP 534 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 L+ + +FL PPL++IT G + +A DE K IL + K+ KI ++RFKGLGEM Sbjct: 535 GLLNEGRVFLACPPLYKITHGQDTYWAADEAAKAAILAKLPKN--AKITMTRFKGLGEMP 592 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A L ET +D +R LL+V + +I LMG + RF+FI E A D+ Sbjct: 593 AKLLFETTLDPARRRLLKVVVPD--EDRHYVDSTITDLMGKDPEPRFRFIMEEAYNARDI 650 Query: 685 G 685 Sbjct: 651 D 651 >gi|297562245|ref|YP_003681219.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846693|gb|ADH68713.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 701 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 240/692 (34%), Positives = 335/692 (48%), Gaps = 59/692 (8%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ I+V+L Sbjct: 12 EDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCMWEIIDNSVDEALGGFCTRIDVTL 71 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V D+GRGIPV+ PK S +E+++T LHAGGKF + +Y SGGLHGVG SV Sbjct: 72 HSDGSVSVSDDGRGIPVDAEPK-SGLSGVELVMTKLHAGGKFGSGSYTASGGLHGVGASV 130 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR---------------NKRGTR 206 VNALS + V V RQ + F RGIP GTR Sbjct: 131 VNALSSRVDVEVDRQGRTHAISFRRGIPGRFAGSGPDAEFTPVSGLEQVRKVAQKITGTR 190 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I F PD +IF A LL + A+L + ++ E EEF F Sbjct: 191 IRFWPDMQIFLKDADIAREALLDRARQTAFLVPGLTLSVRDERVEGEPAHE---EEFRFD 247 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + + G R V+ A+ W Sbjct: 248 GGIGEFCTFLAPDEPVSDVLRIQGSGNFTETVPVLDDAGHMVPADVERRLDVDVALRWGT 307 Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367 S+ N I T +GGTH +G AL R I + T+ R DD Sbjct: 308 GYDTTVRSFVNVIATPKGGTHINGFERALVRVINEQLRTTKLLRNSDDPVTKDDTQEGLT 367 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVI 423 +++V + EP+F GQTK L + A R V + +L LE V+ Sbjct: 368 AVVTVRLPEPQFEGQTKEILGTSAATRIVSQVVGKELREFLTSTKKVEKARARSVLEKVV 427 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ RL R+QRE RKTA+ LP KL DC +ELFIVEGDSA G+AK AR Sbjct: 428 GAAKARLAARQQRETQRRKTALENSALPAKLVDCRSEGLEHSELFIVEGDSALGTAKLAR 487 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LP+RGKILNV + + N + ++Q +G + + + RY ++I+M Sbjct: 488 DSEFQALLPIRGKILNVQKSSVADMLKNAECAAILQVVGAGSGRTFDIDAARYGRIILMA 547 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-------TQGTK----SVYA 591 DADVDGAHI LLLT Y+ M ++E ++ PPL RI +G+K VY Sbjct: 548 DADVDGAHIRCLLLTLIYRYMRPMLEAGRVYAAVPPLHRIELTNTRRKRGSKPEDRYVYT 607 Query: 592 HDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 + + + L + +K K + R+KGLGEM A QL ET MD RTL R+ + + Sbjct: 608 YSDAELSRTLLDLEKRKISWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRIRVEQ--- 664 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682 ++ N LMG + R +FIQ+ A +D Sbjct: 665 -AEEASSVFNLLMGNEVAPRRRFIQQGAQELD 695 >gi|218894062|ref|YP_002442931.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58] gi|218774290|emb|CAW30107.1| topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58] Length = 629 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G S LE V + GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFANGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|212711189|ref|ZP_03319317.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM 30120] gi|212686357|gb|EEB45885.1| hypothetical protein PROVALCAL_02261 [Providencia alcalifaciens DSM 30120] Length = 631 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 250/645 (38%), Positives = 362/645 (56%), Gaps = 24/645 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNAEDIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAGHIQVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YPDQSLEVIDDGRGMPVDIHPEM-KVSAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L+ + GT + F PD + + D Sbjct: 120 VNALSKRIEVTVRRDGQVYQIAFENGDKVEDLQVIGTCGKRNTGTSVHFWPD-ESYFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L V+ + E + + + GL YL ++ Sbjct: 179 RFSVSRLTHNLKAKAVLCPGVQITFKDLLNDTE-------QSWCYSDGLTDYLMESVDGF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + ++ FTG+ + +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 EALPAKPFTGEFSAEVE---AAQWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNQNVQVAEQLAEMAISSAQRRLR--ASKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGMDPDSEDI-SQLRYGKVCILADADSDGLHIATLLCALFVRHFPKLVKEGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G ++ YA DE K +L+ + KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKETYYALDESEKNAVLDRLSRK-KGKPNVQRFKGLGEMNPPQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+ D N + L ++++R ++QE+ + Sbjct: 585 RRLVQLTIDDD-NYTETMSKMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|89075922|ref|ZP_01162297.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34] gi|89048363|gb|EAR53941.1| DNA topoisomerase IV subunit B [Photobacterium sp. SKA34] Length = 627 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 260/646 (40%), Positives = 368/646 (56%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L VVD+GRG+PV+ HP+ S +E+IL LHAGGKF + Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSSKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G +S LE R +GTR+ F PD K F Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L ++ ++ E + + GLK YL ++ Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 +L+ E FTG +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 TLLPEEPFTGVFSA---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L + P A +L E I + R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ ++++ ++ Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSSDQVLASEEVHNIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S+ LRY K+ ++ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 467 IALGIDPDSEDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEHLVRAGHVFIAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K ILE K +GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLYRIDLGKEVYYALDEAEKNSILERLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D +T + ++ L+G K A++R ++Q + + Sbjct: 585 RRLVQLTIDDDN----ETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626 >gi|139439853|ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC 25986] gi|133774781|gb|EBA38601.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC 25986] Length = 650 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 242/662 (36%), Positives = 342/662 (51%), Gaps = 51/662 (7%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T LHHL E++DN++DE +AG+ I+V++ + +TVVDNGRGIPV+ HP Sbjct: 1 MYIGSTSASGLHHLVWEIVDNSVDEAMAGFCTEIQVTVHADNSITVVDNGRGIPVDEHP- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 TLE+++T LHAGGKFDNS Y++SGGLHGVGISVVNALS + V V R + + Sbjct: 60 VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGISVVNALSKRVVVQVRRDGNTYEME 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 FSRG + +E + GT +TF PD +IF +D L Q A+L+ +K Sbjct: 120 FSRGKTVKKMEVVG-TSDSTGTTVTFWPDDEIFETCI-YDFDTLHNRLQETAFLNKNLKI 177 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS--SEIFTGKTEKKGT---- 297 + ++E P EEF + GG+ +++ E + + E + + Sbjct: 178 VLTDERE-----ATPHVEEFCYEGGIIDFVKFLNEGKDVPEAFKEPIYIEGKSDPDAPVA 232 Query: 298 HRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRA 354 G VE ++ W E S+ N I T EGG H G R ALTR I YA ++ Sbjct: 233 KMGEVEVSLQWNSGYGENVMSFANDIYTPEGGMHLEGFRTALTRVINDYARKQNLLKEKD 292 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 ++ DD+ ++SV + +P+F GQTK KL S + + D YL ++P Sbjct: 293 ANLTGDDVREGLSAVISVKLPDPQFEGQTKAKLGSSYMRALTLKIVTDGLVDYLEEHPKP 352 Query: 415 ATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A ++++ + + R RK RE R+ + + LPGKLADCS A TELFIVEGDS Sbjct: 353 AREIVKKAQQACKARNAARKAREATRRKSLLETASLPGKLADCSVRDAELTELFIVEGDS 412 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS------Q 527 AGGSAK R R QA+LPLRGKILNV G + ++ I L+ A+GC + Sbjct: 413 AGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSDTIQSLITAIGCGVTTSAGDGGD 472 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTK 587 + RY K+IIMTDADVDGAHI LLLTFFY+ M LI+ ++++ PP+F I K Sbjct: 473 FDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGYVYVACPPIFGIKVRNK 532 Query: 588 SVYAH-----------------------DEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 Y + D + K + + + R+KGLGEM Sbjct: 533 IHYVYPNGRQPEDEILRDTIQSLGLNPDDNDEDGKAKDGKITKKRKGYTVQRYKGLGEMD 592 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL T MD R L RV I + ++ +LMG++ R ++I++ A + Sbjct: 593 PKQLASTTMDPKTRILQRVSIEDAVV----ADRAVRELMGSEVGYRREYIEKHAHDARFL 648 Query: 685 GT 686 Sbjct: 649 DA 650 >gi|18311051|ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13] gi|18145733|dbj|BAB81775.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13] Length = 650 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 225/663 (33%), Positives = 353/663 (53%), Gaps = 36/663 (5%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + ++NYD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 4 SNKNNNYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGYGNKA 63 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V L+ + +TV+DNGRGIP HP K+ +E++ T LH GGKF+N Y+ SGGLHGV Sbjct: 64 KVILNKDKSVTVIDNGRGIPTGMHP-IKKKTGVEMVFTELHTGGKFNNQNYKTSGGLHGV 122 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTR 206 G +VVNALS L V V + I+ Q+F G P++PLE + + GT+ Sbjct: 123 GAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESKE-TGTK 181 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF PD ++F + F + + Q A+ + ++ +++ +Y Sbjct: 182 VTFLPDREVFST-SDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKE-----YYSE 235 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILT 324 GL ++ E+++ + + EK+ + E + + + I SY N I T Sbjct: 236 RGLLDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPT 295 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL I+ + I P F GQ Sbjct: 296 TEAGTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQ 355 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TKTKL + +A + + F H++ N AT ++ ++ + R + +K + RK Sbjct: 356 TKTKLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKK 415 Query: 443 AIRKL-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 IGKGTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 475 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 476 QKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYR 535 Query: 562 EMYDLIEQKHLFLISPPLFRITQ----GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL+L PPL+++ + K +YA+ ++ +++ ++ K I RF Sbjct: 536 YMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGA----TIQRF 591 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL ET ++ RTL++V I + ++ LMG R ++ + Sbjct: 592 KGLGEMNPDQLWETTLNPETRTLVQVTIED----AAKAEKMVSLLMGDVVQPRKNYMYKY 647 Query: 678 ASF 680 A F Sbjct: 648 AEF 650 >gi|15600160|ref|NP_253654.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1] gi|254244145|ref|ZP_04937467.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192] gi|81783542|sp|Q9HUJ8|PARE_PSEAE RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|9951249|gb|AAG08352.1|AE004909_8 topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1] gi|126197523|gb|EAZ61586.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192] Length = 629 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G S LE V + GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|322513687|ref|ZP_08066782.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC 25976] gi|322120495|gb|EFX92402.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae ATCC 25976] Length = 637 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 247/650 (38%), Positives = 366/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HADNSLEVIDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGAKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFVD-------HINNNSESWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T + GTH +GLR L Sbjct: 232 ECLPNPPFIGDVSSETE---AVSWALTWLPEGGELLAESYVNLIPTAQCGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNMQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEVEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINKDLNSLKDTQDSINK----LMGTKADERFKFIQERASFID 682 R L+++ +++ + ++ ++ L +A++R +++Q R D Sbjct: 585 TRRLVQLTLDELDTTEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAD 634 >gi|118602571|ref|YP_903786.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567510|gb|ABL02315.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 627 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 250/644 (38%), Positives = 365/644 (56%), Gaps = 22/644 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NYD+SSI IL GLE VR RPGMY T+ + +HL EVIDN++DE IAGYA+ I V L Sbjct: 2 SNYDSSSIEILTGLEAVRKRPGMY---TETERPNHLAQEVIDNSVDETIAGYASKISVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V DNGRG+PV+ HPK KS +E+ILT LHAGGKF N +Y+ SGGLHGVGISV Sbjct: 59 YKDGSLSVEDNGRGMPVDIHPK-EGKSGVEVILTKLHAGGKFSNDSYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R FS G + LE KV + GT + F+PD + F D Sbjct: 118 VNALSTLVEIWIKRDAKEHYITFSNGFKQTELEITRKVGKRNTGTTVKFKPDAQ-FFDTI 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +L +SKA L ++ + + + A +++ + GLK YL L+ Sbjct: 177 KFSVTKLRHNLRSKAVLCPGLEVNFYNEIDEA-------TDKWIYKEGLKDYLSISLDVL 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + K + A N SY N I T GGTH +GLR L Sbjct: 230 DCL-PPTPFIIDYKTDEQQLNCSLAWTQYNTNVVAESYVNLIPTIGGGTHVNGLRSGLNE 288 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +K++ E + I + DD+ LS+ I +P+F+GQTK +L S ++ V N Sbjct: 289 ALKEFCEFRNLIPKNIKLTPDDIWQKIAYTLSIKILDPQFSGQTKERLSSRESASFVANV 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L Q+ A ++ + I ++ RL+ ++V RK I LPGKL+DC+ Sbjct: 349 VKDAFSLWLNQHTSIAEQIAQLAIANAQARLKTN--KKVIRKKIISGPALPGKLSDCTST 406 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TE+F+VEGDSAGGSAKQAR++ QA+LPLRGKILN SE++ + +I D+ A Sbjct: 407 DLNQTEVFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVDSEQVLASNEIHDIAIA 466 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S+ LRY K+ I+ DAD DGAHIA+L+ T F + LI++ H+F+ PPL Sbjct: 467 IGLEPNSEDL-SGLRYGKICILADADSDGAHIATLICTLFVKHFQKLIQKGHIFVAMPPL 525 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638 +R+ G YA D+ + I+++ + K KI++ RFKGLGEM QL+ET M + R Sbjct: 526 YRVDAGKYVHYALDDNERDAIIKKIENKNKHVKIQVQRFKGLGEMNPYQLRETTMLPDTR 585 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ L + ++K +A +R K+++E+ + + Sbjct: 586 HLIQLTLDDPLQVFQTMDMLLSK---KRAADRKKWLEEKGNLAN 626 >gi|85058249|ref|YP_453951.1| DNA topoisomerase IV subunit B [Sodalis glossinidius str. 'morsitans'] gi|84778769|dbj|BAE73546.1| topoisomerase IV subunit B [Sodalis glossinidius str. 'morsitans'] Length = 631 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 252/646 (39%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 4 SSYNADAIEVLSGLEPVRRRPGMY---TDTLRPNHLGQEVIDNSVDEALAGHARRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HPDQSLEVTDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G + L + GT + F PD + F D Sbjct: 120 VNALSTRVEVTVRRNGNVYRIAFENGDKVEDLSVVGTCPKRNTGTSVHFWPD-EHFFDSP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSVSRLTHLLKAKAVLCPGVEIVFQDRVNNTE-------QRWCYEAGLTDYLNEAINGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G TV+W + W E E SY N I T +GGTH +GLR L Sbjct: 232 ITLPETPFVGAVSGDTE---TVDWVLLWLPEGGELLTESYVNLIPTPQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEYRNILPRGVKLSADDIWERCTYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFILWLNQNIQVAEQLAELAIASAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 407 AQDLVRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY K+ I+ DAD DG HIA+LL F Q L+E+ H+++ P Sbjct: 467 VALGIDPDSNDL-SQLRYGKICILADADSDGLHIATLLCALFMQHFRKLVEEGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEEEKTGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + ++ T ++ L+ K +++R ++QE+ + Sbjct: 585 RRLVQLTV--GADDVQQTLAMMDMLLAKKRSEDRRNWLQEKGDEAE 628 >gi|72162533|ref|YP_290190.1| DNA topoisomerase IV subunit B [Thermobifida fusca YX] gi|71916265|gb|AAZ56167.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobifida fusca YX] Length = 702 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 239/692 (34%), Positives = 335/692 (48%), Gaps = 59/692 (8%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AGY IEV L Sbjct: 13 EEYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCMWEIIDNSVDEALAGYCTRIEVVL 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ P S +E+++T LHAGGKF + +Y SGGLHGVG SV Sbjct: 73 HADGSVEVRDNGRGIPVDIEP-SSGLSGVELVMTKLHAGGKFGSGSYTASGGLHGVGASV 131 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206 VNALS L V V R ++ F RGIP + ++ GTR Sbjct: 132 VNALSARLDVEVDRGGHTYAMSFRRGIPGVFDMDGPDAGFTPRSGLEKIRKIPAKVTGTR 191 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F D +IF A L++ + A+L + ++ E+ EEF F Sbjct: 192 VRFWADRQIFLKDAEISREALVERARQTAFLVPGLSIAIRDERTEGEEPYE---EEFRFD 248 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + ++ G R V+ A+ W Sbjct: 249 GGIGEFCDYLAPDTAVSPLLRIEGSGTFTETVPVLDDQGHMVPTDVERRLDVDIALRWGT 308 Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAV 367 + S+ N I T +GGTH SG AL R I T+ +A +D++ Sbjct: 309 GYDTVVRSFVNVIATPKGGTHVSGFERALVRVINDQLRATKLLKANDEPVTKEDVLEGLT 368 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL----LEWVI 423 +++V + EP+F GQTK L + A R V + +L + LE ++ Sbjct: 369 AVVTVRLPEPQFEGQTKEVLGTSAASRIVSQIVSQHMRAFLTSTKRAEKQQARTVLEKIV 428 Query: 424 ERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 ++ RL R+QRE RK A+ LP KL DC +ELFIVEGDSA G+AK AR Sbjct: 429 NAAKARLAARQQRETQRRKNALENSALPAKLVDCRSEGLERSELFIVEGDSALGTAKLAR 488 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 + QA+LP+RGKILNV A + N + ++Q +G + + + RY +VI+M Sbjct: 489 DSEFQALLPIRGKILNVQKASVADMLKNAECAAIIQVIGAGSGRTFDLDAARYGRVILMA 548 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-------TQG----TKSVYA 591 DADVDGAHI LLLT FY+ M ++E +F PPL RI +G + +Y Sbjct: 549 DADVDGAHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIELTNVRRKRGARPEDRYIYT 608 Query: 592 HDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 + + + L E G K + R+KGLGEM A QL ET MD RTL R+ + Sbjct: 609 YSDAELHQKLAELAAKGITWKEPVQRYKGLGEMDADQLAETTMDPRYRTLRRIRL----K 664 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R FI + A +D Sbjct: 665 DAAEAEAMFELLMGNEVAPRRAFIAQGARELD 696 >gi|284031369|ref|YP_003381300.1| DNA topoisomerase [Kribbella flavida DSM 17836] gi|283810662|gb|ADB32501.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836] Length = 694 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 237/698 (33%), Positives = 341/698 (48%), Gaps = 55/698 (7%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 +P + Y+A ++ +LEGLE VR RPGMYIG TD + L H E+IDNA+DE + Sbjct: 2 AAPTPRSTELDPTYNARNLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ + I+V L +G + V D RGIPV+ PK S +E++ T LHAGGKF +Y Sbjct: 62 AGHGDRIDVVLHKDGSVEVRDKARGIPVDIEPK-TKLSGVEVVFTKLHAGGKFGGGSYNA 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI--------------PLSPLEKK 196 SGGLHGVG SVVNALS L V V R +++ F RG+ P L K Sbjct: 121 SGGLHGVGASVVNALSARLDVEVDRGGVVWTTSFRRGVAGEFDGEGATAGFTPAKGLRKA 180 Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 + + GTRI + D +IF A F+ L+ + ++L ++ ++ Sbjct: 181 GRAKKGVTGTRIRYWADRQIFTRDAAFNYDELVTRARQTSFLVPGLELVIRDER-----G 235 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299 P +E F GG+ + + ++ + TG Sbjct: 236 HEPTEESFKHDGGISEFCEFLATDQKVTDVIRLTGTGHFTETVPMLDDAGHMTPTDVERD 295 Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAISI 357 V+ A+ W + S+ N + T +GGTH +G AL++ K + Sbjct: 296 LDVDIAVRWGDGYETEVRSFVNIVATPKGGTHVAGFERALSKAFTGVLTGTRLLKSGEEV 355 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 I DD++ +++V + EP+F GQTK L + A R V ++ + +L A Sbjct: 356 IKDDVLEGLTSVVTVRLAEPQFDGQTKEVLGTPAASRIVAKVVQTELEKFLTSAKGAAKA 415 Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 LE V+ S R+ R+ RE RKTA+ LP KLADC N +ELFIVEGD Sbjct: 416 QARAVLEKVVAASRTRVAARQHRELQRRKTALESSALPAKLADCRSNDVDRSELFIVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+LP+RGKILNV A + N + ++Q +G + + E Sbjct: 476 SALGTAKLARNSEFQALLPIRGKILNVQKASVGDMLKNAECASIIQVVGAGSGRTFDLEQ 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT- 586 RY K+I M DAD DGAHI LL T F++ M L++ ++ PPL R +G Sbjct: 536 ARYGKIIFMADADSDGAHIRCLLATLFFRYMRPLVDAGRVYTAVPPLHRFELTNPKKGQD 595 Query: 587 KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 K +Y + + Q+ E K G + K R+KGLGEM A QL ET MD RTL R+ + Sbjct: 596 KYIYTYSDAEYQRKSAELMKKGVRWKEPPQRYKGLGEMDADQLAETTMDPRHRTLRRITV 655 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 + + + LMG R +FI + A +D+ Sbjct: 656 DDG----EAAASVFDLLMGNDVAPRKEFIVQGAYELDE 689 >gi|294631850|ref|ZP_06710410.1| DNA gyrase, B subunit [Streptomyces sp. e14] gi|292835183|gb|EFF93532.1| DNA gyrase, B subunit [Streptomyces sp. e14] Length = 707 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 242/707 (34%), Positives = 355/707 (50%), Gaps = 55/707 (7%) Query: 24 KKSGEIPDSP--AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 +P + A A++ S+ Y A + +LEGLE VR RPGMYIG TD + L H E+ Sbjct: 2 TADTSVPSTALLAGADRDGSN-YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEI 60 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDN++DE +AG + IEV L +G + V DNGRGIPV+ P+ S +E+++T LHAGG Sbjct: 61 IDNSVDEALAGVCDHIEVVLHDDGSVEVRDNGRGIPVDVEPR-TGLSGVEVVMTKLHAGG 119 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------ 189 KF +Y SGGLHGVG SVVNALS L V V R + F RG+P Sbjct: 120 KFGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFTGSGPEAKF 179 Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 + K+ +++ GTR+ + D +IF A L + + A+L + Sbjct: 180 EATSGLRKVKKIPKSRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVR 239 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293 + + E E E F F GG+ + + +R + +G+ Sbjct: 240 DEFGLGEGGSKGE-ESFRFDGGISEFCEYLANDRPVCDVLRLSGQGTFKETVPVLDEHGQ 298 Query: 294 ---KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + T V+ A+ W S+ N I T +GGTH +G A+T+ + + Sbjct: 299 MTPTEVTRELGVDVALRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAK 358 Query: 350 QNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + R DD + +++V + EP+F GQTK L + A+R V N + + Sbjct: 359 KLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTAAARRIVNNVISKELKAF 418 Query: 408 LVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462 L +A + V+E+ R+ + RKTA+ LP KLADC + Sbjct: 419 LTSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVD 478 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 479 RSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGA 538 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 539 GSGRTFDLDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRI 598 Query: 583 -----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 +G K VY + + + K+LE K+ + K I R+KGLGEM A QL ET MD Sbjct: 599 ELVQPKKGQDKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDP 658 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ ++ L+ + + LMG R +FI A+ +D Sbjct: 659 RHRTLRRINLSD----LEAAEQVFDLLMGNDVAPRKEFIASSAATLD 701 >gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 662 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 254/654 (38%), Positives = 364/654 (55%), Gaps = 22/654 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S +YDA SI++L+GLEPVR RPGMYIG T K LHHL EV+DN++DEV AG+A+ + V Sbjct: 21 SGDYDAGSIQVLQGLEPVRKRPGMYIGSTSTKGLHHLVWEVLDNSVDEVQAGHASHVRVV 80 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVG 158 ++ NGF++VVD+GRGIP + HP KS+LE +LT LHAGGKF + Y +SGGLHGVG Sbjct: 81 VEENGFVSVVDDGRGIPTDVHP-VTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGVG 139 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITFRPDPKIF 216 ISVVNALS+ + VTV R + Q FSRGI L P+ +K++ K+GT I F+PD +IF Sbjct: 140 ISVVNALSELVEVTVWRNGNEYIQSFSRGIALGPMQEKKQDGSGQKKGTMIRFKPDDQIF 199 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD + + A+L+ + + +K E E+ F GLK Y+ Sbjct: 200 DK-VKFDPTIIRTRMKELAFLNSGTELHL---RTFDKKTKEYEDEKLLFAEGLKDYVLDL 255 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRV 336 + + + T G R + + Y N+I T +GGTH GL+ Sbjct: 256 TSDATRLHEP-ITFSGTMDGV-RVEGALCWTADSYSDTLLGYANSIRTTDGGTHLDGLKY 313 Query: 337 ALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LT+ + + + + ++ D + G+++V++ EPEF GQTKT+L + + +R Sbjct: 314 SLTKTLNVVSRKAKLLKDSDPNLGGDHIREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRR 373 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKL 453 VEN D ++ NP + +R + V RKT + RLPGKL Sbjct: 374 IVENIANDAVAGHMEFNPSVLKSIFAKAQSAFKAAEAAKRAREMVRRKTVLTSNRLPGKL 433 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-SAGSEKIRNNQQ 512 +DCS + A TE+F+VEGDSAGGS KQ R+R QAVLPLRGKI+NV + + N + Sbjct: 434 SDCSSSDADQTEIFLVEGDSAGGSCKQGRDRGFQAVLPLRGKIMNVERKLDAAALYKNTE 493 Query: 513 IMDLVQALGC-RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I +++ ALG LRY K+II+TDADVDGAHI +LLLTF Y+ DL E+ + Sbjct: 494 ITNMISALGLGGMGEDLDTTALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGY 553 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+++ G K Y +DE+ Q++L + G I RFKGLGEM+ QL T Sbjct: 554 VYAAVPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAK--HIQRFKGLGEMMPEQLWST 611 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ R L R+ ++ + LM + R K I + S + + Sbjct: 612 TLNPKTRVLKRLTVDD----ASAANHMFSTLMSKDVEPRRKLITDEGSTLASID 661 >gi|309811435|ref|ZP_07705222.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185] gi|308434742|gb|EFP58587.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185] Length = 713 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 246/721 (34%), Positives = 370/721 (51%), Gaps = 45/721 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M D D ++ P +Q S G YDA +I++LEGLE VR Sbjct: 1 MADKPSD--DSIDPTTQDPSLADAADGASEQVEQHVRSQIDTEYDADAIQVLEGLEAVRK 58 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL E++DN++DE +AG+A ++V++ + + V DNGRGIP Sbjct: 59 RPGMYIGSTGERGLHHLVWEIVDNSVDEALAGHATRVDVTILPDNGIRVSDNGRGIPTGR 118 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 + + + ST+E++LT LHAGGKF Y++SGGLHGVG SVVNALS L V ++ ++ Sbjct: 119 N-EAYDMSTVELVLTQLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTRLEAEVRQKGHVY 177 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 +F+ G+PL L ++ + ++ GT ITF P+IF +D + Q A+L+ Sbjct: 178 RMEFAGGVPLGELREE-EESDETGTTITFWASPEIFETTV-YDFETIRARFQQMAFLNKG 235 Query: 241 VKTCWSCDK---------------------------EIAEKYGIPEKEEFYFPGGLKTYL 273 + + ++ E A + + + GL Y+ Sbjct: 236 LTISLTDERPDAVDEGAAEEAAADAAAEGADAAQADEAAARAKKGRSVTYCYADGLLDYV 295 Query: 274 QTKLENRSLISSEIFTGKTE-KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + ++ E + +VE A+ W + +Y NTI T EGGTHE Sbjct: 296 KHLNSSKRAEVVNEDIIAFEHEDAERYLSVEVAMQWTTAYSESVHTYANTINTHEGGTHE 355 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 G R A+T+ + +A + ++ ++ DD+ ++SV + EP+F GQTKTKL + Sbjct: 356 EGFRAAMTKLVNDFARREKLLKEKDDNLTGDDIREGLTAVISVKLAEPQFEGQTKTKLGN 415 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLR 448 + + V+ A+RD FDH+L +P E ++ I + R+ RK RE R+ + Sbjct: 416 SEVKGFVQTAVRDEFDHWLQMHPREGKAIVSKAIAAASARMAARKARETARRKGLLESGG 475 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC +E+FIVEGDSAGGSA Q RN NQA+LP+RGKILNV A +K+ Sbjct: 476 LPGKLRDCQSKDPSISEVFIVEGDSAGGSAVQGRNPFNQAILPIRGKILNVEKARLDKVL 535 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N ++ L+ G + E RY K+++M DADVDG HI +LLLT ++ M LIE Sbjct: 536 ANNEVQGLISGFGTGIGEDFTIEKARYHKIVLMADADVDGMHIRTLLLTLLFRFMRPLIE 595 Query: 569 QKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEML 624 +++L PPL+RI +A + + +++ + G + + R+KGLGEM Sbjct: 596 AGYVYLAQPPLYRIKWSNHEHEFAFTDRERDAMIDAGQSKGWRLPKENGVQRYKGLGEMN 655 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 +L ET MD RTLL+V + + LMG + R FIQ A + + Sbjct: 656 YQELWETTMDPESRTLLQVTLED----AAAADEIFAVLMGEDVESRRSFIQRNAKDVRFL 711 Query: 685 G 685 Sbjct: 712 D 712 >gi|152986866|ref|YP_001351015.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PA7] gi|150962024|gb|ABR84049.1| DNA topoisomerase IV, B subunit [Pseudomonas aeruginosa PA7] Length = 629 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G + LE V R GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDTDLEVIGTVGRRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|54296715|ref|YP_123084.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Paris] gi|148360657|ref|YP_001251864.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby] gi|53750500|emb|CAH11894.1| Topoisomerase IV subunit B [Legionella pneumophila str. Paris] gi|148282430|gb|ABQ56518.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Corby] Length = 626 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 247/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E + + GL YLQ L Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLQQTLP- 228 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 E K A + SY N I T +GGTH +GLR L Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + ++ EL R + + +DDL S +LS+ ++EP+FAGQTK +L S V N Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Q Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S E LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ PP Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G YA D+E K +I++ + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIIQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ + + +NK +A +R +++ + + + Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625 >gi|330448753|ref|ZP_08312400.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492944|dbj|GAA06897.1| DNA topoisomerase IV, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 627 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 260/646 (40%), Positives = 366/646 (56%), Gaps = 28/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV L Sbjct: 4 QSYNAGAIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L VVD+GRG+PV+ HP+ S +E+IL LHAGGKF Y+ SGGLHGVGISV Sbjct: 61 HADQSLEVVDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSGKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R ++ F G +S LE R +GTR+ F PD K F Sbjct: 120 VNALSKRVEVTVKRDGQVYQIAFENGDKVSELEVIGTCGRRAKGTRVHFWPDAKYFDSA- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL ++KA L ++ ++ E + + GLK YL ++ Sbjct: 179 KFSVSRLKSNLKAKAVLCPGLEIVFTNK-------ITDETIRWCYEDGLKDYLAEGVKGY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 +L+ E FTG +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 TLLPEEPFTGVFSA---QTEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV I++P+FAGQTK +L S V Sbjct: 289 LDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKIQDPQFAGQTKERLSSRQCAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L + P A +L E I + R+R ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q++ D+ Sbjct: 407 QQDLNRTELFLVEGDSAGGSAKQARDRMYQAIMPLRGKILNTWEVSADQVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY K+ ++ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 467 VALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVFIAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K IL+ K +GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 PLYRIDLGKEVYYALDEAEKNGILDRLKGK-RGKVNVQRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D +T + ++ L+G K A++R ++Q + + Sbjct: 585 RRLVQLTIDDD----SETNEMMDMLLGKKRAEDRRHWLQSKGDMAE 626 >gi|302557980|ref|ZP_07310322.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000] gi|302475598|gb|EFL38691.1| DNA gyrase subunit B [Streptomyces griseoflavus Tu4000] Length = 707 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 239/706 (33%), Positives = 349/706 (49%), Gaps = 52/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + GY + I+V L +G + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDEALGGYCDHIDVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199 F +Y SGGLHGVG SVVNALS L V V R + F RG+P + + Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFAAVGPEAKFE 180 Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 +++ GTR+ + D +IF A L + + A+L + Sbjct: 181 AGSGLRKARKIPKSRSGTRVRYWADRQIFLKDAKLALDTLHQRARQTAFLVPGLTIVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + E E E F F GG+ + + +R + + FTG+ Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEFLASDRPVCDTLRFTGQGIFKETVPVLDEHGQM 299 Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W S+ N I T +GGTH +G A+ + + + + Sbjct: 300 TPTEVTRELGVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKK 359 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFL 419 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 +A + V+E+ R+ + RKTA+ LP KLADC + Sbjct: 420 TSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDR 479 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 540 SGRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599 Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + + L EF+ K+ + K I R+KGLGEM A QL ET MD Sbjct: 600 LVQPRKGQDKYVYTYSDRELRDTLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + L+ + + LMG R +FI A+ +D Sbjct: 660 HRTLRRINLTD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 701 >gi|296120379|ref|YP_003628157.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] gi|296012719|gb|ADG65958.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] Length = 635 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 264/646 (40%), Positives = 363/646 (56%), Gaps = 20/646 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y AS I ++EGLE VR RP MYIGG D + LHHL E++DN++DE +AG A I V+L Sbjct: 5 YTASDIEVIEGLEAVRRRPSMYIGGVDARGLHHLLWEIVDNSVDECLAGEATEITVTLHK 64 Query: 104 NG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +V DNGRGIPV+ HPK KS LE ILTTLH+GGKF + Y SGGLHGVG SVV Sbjct: 65 DGESCSVSDNGRGIPVDLHPK-TKKSALETILTTLHSGGKFSKNAYARSGGLHGVGSSVV 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+E+ T+ R + Q+F RG P + L++ R RGT + FRPD +IF F Sbjct: 124 NALSEEMVATIHRDGFEWQQRFKRGKPTTALKQVRPFRG-RGTDVFFRPDKEIFARTV-F 181 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + +Y+ +K + E + P GL+TYL + Sbjct: 182 SIETIKAHLEDISYIHAGLKITLIDE-------AKKETVVLHHPDGLQTYLARLMTEGQR 234 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGI 342 + K + + SY N I T GGTHESGL+ A+ + + Sbjct: 235 KPVHENLFQFSKDDGSYKVEAVFRWSESTDEHLRSYVNGIRTHAGGTHESGLKSAIGKAV 294 Query: 343 KKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 + Y E+ K + ++I +DD+ VG+LSVF+ EP F GQTK KL + + VE +R Sbjct: 295 RNYMEVHDIKVKGLTIQNDDIREGIVGLLSVFLAEPMFQGQTKEKLNNPEMSSVVEGQIR 354 Query: 402 DPFDHYLVQNPIEATKLLEWVI--ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +++L N A ++ ++ R+ R + A R+L LPGKL DC Sbjct: 355 PALENWLSSNKTTADAIVGRIVLAARARAASREAASEVRRKSPAARRLSLPGKLLDCRST 414 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 A +ELFIVEG SAGG+A R+ QAVLPLRGK+LN + + KI +NQ+I DLV+ Sbjct: 415 NADESELFIVEGLSAGGTAGMGRDSRTQAVLPLRGKVLNTQNMTTAKILDNQEIKDLVET 474 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LG + LRY K+I+M DAD DG HI++LLLTFF+ M LI Q LFL PPL Sbjct: 475 LGTGIGPNFDLHRLRYGKIILMMDADSDGYHISTLLLTFFFGHMPVLITQGKLFLAQPPL 534 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +RI G + YA D+ HK++ L+ + ++ RFKGLGEM SQLKET +D R Sbjct: 535 YRIQSGNQIFYARDDLHKEEFLDSLPAN--RNPDVLRFKGLGEMTPSQLKETTLDPKTRI 592 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLR++I+ L + + KL+G + ER+K I E+A+ +DD+ Sbjct: 593 LLRIDIDNQL----EADQTFEKLLGKEPAERYKLIMEQANQVDDLD 634 >gi|290474836|ref|YP_003467716.1| DNA topoisomerase IV subunit B [Xenorhabdus bovienii SS-2004] gi|289174149|emb|CBJ80936.1| DNA topoisomerase IV, subunit B [Xenorhabdus bovienii SS-2004] Length = 631 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 369/646 (57%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 4 SSYNAEAIEVLSGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKHIEVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 HSDQSLEVIDDGRGMPVDIHPE-EKVSAVELILTRLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + + F G + LE + GT + F PD + + D Sbjct: 120 VNALSRRVEVTVRRDSQVHQIAFESGDKVQELEVIGSCGKRNTGTSVHFWPD-ESYFDIP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A+RL + ++KA L V+ + E +++ + GL YL + Sbjct: 179 RFSASRLTHLLKAKAVLCPGVEIVFKDKLAGTE-------QKWCYADGLTDYLLEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPQTPFVGVLRGDTE---AVDWALLWLPEGGELLAESYVNLIPTIQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LS+ +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEFRNILPRGVKLSADDIWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L Q+ +A +L E I ++ R+R ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQHIQDAEQLAEMAIASAQRRMR--AAKKVVRKKLTNGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLKLTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY KV I+ DAD DG HIA+LL F + L+++ H+++ P Sbjct: 467 VAIGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFLTLVKRGHVYMAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K ILE + +GK + RFKGLGEM QL+ET +D N Sbjct: 526 PLYRIDLGKEVHYALDEGEKGAILERLSRK-RGKPNVQRFKGLGEMNPIQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ I+ D + ++T ++ L+ K +++R ++QE+ + ID Sbjct: 585 RRLVQLTIDDD--NYQETFSVMDMLLAKKRSEDRRNWLQEKGNSID 628 >gi|126208721|ref|YP_001053946.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae L20] gi|307250504|ref|ZP_07532449.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|126097513|gb|ABN74341.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306857446|gb|EFM89557.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 637 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|120555705|ref|YP_960056.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8] gi|120325554|gb|ABM19869.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8] Length = 631 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 258/649 (39%), Positives = 367/649 (56%), Gaps = 28/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 SEQQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L+V D+GRG+PV+ H K +E+IL+ LHAGGKF Y SGGLHGVG+ Sbjct: 59 VLHSDNSLSVEDDGRGMPVDLH-KEEGLPGVELILSRLHAGGKFSQGNYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L VT+ R + F+ G S LE + V + GTR+ F PDPK F Sbjct: 118 SVVNALSTHLEVTIKRDGQVHRMTFANGDKASELEVVDTVGKRNTGTRLKFTPDPKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL ++KA L + + +K EK+E+++ GL+ YL+T L Sbjct: 178 PN-FSVSRLRHNLRAKAVLCPGLTVTFLQEK-------TGEKDEWFYEDGLRDYLRTALA 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRV 336 + + E FTG + V+WAI W E + SY N I T +GGTH +GLR Sbjct: 230 DIEAVPLEPFTGSFSGN---KEAVDWAIQWLPEGGDAVLESYVNLIPTAQGGTHVNGLRT 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +D+ +LS ++EP+F+GQTK +L S +A Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERVAYVLSFKMQEPQFSGQTKERLSSREAAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L Q+ A L E I ++ RLR ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQHTDIAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN S +I +Q++ D Sbjct: 405 CSGGDTARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S LRY K+ I+ DAD DG HIA+LL F + L+ H+F+ Sbjct: 465 IAVAIGVDPGSDDL-AGLRYNKICILADADSDGLHIATLLCALFVKHFRPLVAAGHVFVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ G ++ YA DE KQ I++ KGKI+++RFKGLGEM QL+ET M Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRLAAENRKGKIQVTRFKGLGEMNPLQLRETTMA 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+ + + + DT + ++ L+G K A +R +++ + D Sbjct: 584 PDTRRLVMLTLEEG----DDTDERMDMLLGKKRASDRRAWLEAYGNMAD 628 >gi|126175769|ref|YP_001051918.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155] gi|160873940|ref|YP_001553256.1| DNA topoisomerase IV subunit B [Shewanella baltica OS195] gi|217972001|ref|YP_002356752.1| DNA topoisomerase IV subunit B [Shewanella baltica OS223] gi|304411164|ref|ZP_07392779.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183] gi|307306459|ref|ZP_07586202.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175] gi|125998974|gb|ABN63049.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155] gi|160859462|gb|ABX47996.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS195] gi|217497136|gb|ACK45329.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS223] gi|304350357|gb|EFM14760.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183] gi|306910750|gb|EFN41178.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175] gi|315266172|gb|ADT93025.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS678] Length = 628 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 252/647 (38%), Positives = 361/647 (55%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+++ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAIGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + E F G + +WAI W E E SY N I T GGTH +G R Sbjct: 230 NLRLPDEPFVGCFKG---QLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ A ILSV ++EP+FAGQTK KL S V Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L N A L E I ++ RL+ K +V RK LPGKL DC Sbjct: 347 SGVVRDAFSLWLNSNTELAESLAEMCINNAQSRLKAAK--KVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE + IL+ ++ KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 N R L+++ I+ +++T ++ L+ K + +R +++++ Sbjct: 584 NTRRLVQLTIDD----IEETDALMDMLLAKKRSPDRKNWLEDKGDMA 626 >gi|307261731|ref|ZP_07543397.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868549|gb|EFN00360.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 637 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|319790160|ref|YP_004151793.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1] gi|317114662|gb|ADU97152.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1] Length = 804 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 245/582 (42%), Positives = 347/582 (59%), Gaps = 16/582 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 DNYDAS+I++LEGLE VR RPGMYIG T LHHL EV+DN++DE +AGY IE Sbjct: 3 QKQDNYDASAIKVLEGLEAVRKRPGMYIGDTGVYGLHHLVFEVVDNSVDEALAGYCTEIE 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV DNGRGIPV+ HP++ K EI+LT LHAGGKF+ Y+ SGGLHGVG Sbjct: 63 VTIHPDNSITVADNGRGIPVDIHPEY-GKPAAEIVLTVLHAGGKFEKKAYKYSGGLHGVG 121 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L + + R ++ Q + RG P++ NKRGT ITF+PDP+IF Sbjct: 122 VSVVNALSEWLKLEIHRDGKVYKQVYERGKPVTQFTCVG-TSNKRGTIITFKPDPEIFEV 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + A+L+ +K + ++ P++E FY+ GG+ +++ E Sbjct: 181 T-EFSWDILANRLRELAFLNKGLKITLTDER-----VDPPKREVFYYEGGIVEFVKKINE 234 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + E EK VE A+ + +I S+ N I T EGGTH SG R A Sbjct: 235 KKDPLFPEPIYITGEKDDIL---VEVALQYNSTYTEQIFSFVNNINTREGGTHVSGFRSA 291 Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I K+ E ISI DD V ++SV + P+F GQTK KL + + + Sbjct: 292 LTRAITKFIEEHNLLPKNSKISITGDDTREGLVAVISVKVPNPQFEGQTKAKLGNSEVRP 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + + +YL + P K+ E VI + R ++ RE RK+A+ + LPGKL Sbjct: 352 VVASVVYEKLWNYLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ TELF+VEGDSAGGSAKQ R+R QA+LPL+GKI+NV A EK+ +N +I Sbjct: 412 ADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEI 471 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++ +++E+ HL+ Sbjct: 472 KTIITALGTGVGKNFDISKLRYNKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPL+R+ +G K +Y ++ + ++ EF ++ Sbjct: 532 IAQPPLYRLKKGKKEMYIKSDKELESVILEFALDSVKLLDPQ 573 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 LL++ Y++ L + L PP ++ + K + E L + G+ I Sbjct: 680 LLISDLYRQARKLKGEIRAKLGEPP-YKAQKKGKELTFKTLEELYTFLID---SGREGIY 735 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 I R+KGLGEM QL ET M+ RTLL+V + + + LMG K + R +F Sbjct: 736 IQRYKGLGEMNPEQLWETTMNPENRTLLKVTVEDAV----SADEVFTVLMGDKVEPRREF 791 Query: 674 IQERASFIDDVG 685 IQ+ A + ++ Sbjct: 792 IQKFAKEVRNLD 803 >gi|53728805|ref|ZP_00135065.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 637 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKFFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|162447245|ref|YP_001620377.1| DNA topoisomerase IV subunit B [Acholeplasma laidlawii PG-8A] gi|161985352|gb|ABX81001.1| DNA topoisomerase IV, subunit B [Acholeplasma laidlawii PG-8A] Length = 651 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 247/662 (37%), Positives = 356/662 (53%), Gaps = 34/662 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A NYD +SI+ILEGLE VR RPGMYIG TD + LHHL E++DNAMDEV+AG+ + I V Sbjct: 2 AKTNYDETSIQILEGLEAVRKRPGMYIGSTDHRGLHHLVWEIVDNAMDEVLAGFGSEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGVG 158 ++ + + V+D+GRG+P + H T ++I T LHAGGKF + Y+++GGLHGVG Sbjct: 62 TIKPDNAIEVLDDGRGMPYKKH--TSGVPTTQVIFTVLHAGGKFGGDGAYKVAGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS L VTV + IF Q+F G ++K K GT++ F+PDP IF Sbjct: 120 SSVVNALSSVLEVTVYKDGGIFRQRFENGGKKIFNQEKIGDTKKTGTQVYFKPDPSIFST 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 ++ + + + AYL +K ++ +KE F F G+K Y++ Sbjct: 180 TL-YNYDTIKERLKESAYLIKGLKINLIDER-------NNKKETFKFDEGIKAYVEFMNT 231 Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + G VE A+ + + I S+ N + T +GGTHE G + Sbjct: 232 GKNALHDVTDVEGTFNTAKDSAIEVEVALQYTDSYSENIISFVNNVRTKDGGTHEIGFKS 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDA 392 ALT+ I YA ++ +I D+ I+S+ I E EF GQTK KL + +A Sbjct: 292 ALTKVINDYARKYNHIKEKDSNIDGVDIREGLTAIVSLRIPETVLEFEGQTKGKLGTPEA 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRL 449 + +E + F+ +L +N A ++ + + R RK RE R R + L Sbjct: 352 RNALETVFYEKFNTFLEENSDAALSIITKAVAAANAREAARKAREEARAGKKRSKKEVIL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL ELF+VEGDSAGGSAKQ RNR QA+LPLRGK++N +E I Sbjct: 412 SGKLTPAQGKDKSINELFLVEGDSAGGSAKQGRNRRFQAILPLRGKVINTERTNTETILK 471 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I ++ +G + + Y KVIIMTDAD DGAHI +LLLTFF++ M LIE Sbjct: 472 NEEISTMIYTIGADFGEDFDIKKCNYNKVIIMTDADDDGAHIQTLLLTFFFRYMRPLIEA 531 Query: 570 KHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L++ PP +++T ++VYA +E ++ LE ++ I+RFKGLGEM Sbjct: 532 GRLYIAQPPFYKVTYKKNKKEETVYAWSDEDLKETLESIGQN----YMITRFKGLGEMNF 587 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DD 683 QL ET M+ RTL++V I+ S I+ LMG + R ++I+ F D+ Sbjct: 588 YQLWETTMNPESRTLIQVTIDDLNVS----DKHISVLMGDQVAPRREWIEANVDFEVTDE 643 Query: 684 VG 685 Sbjct: 644 FD 645 >gi|152997556|ref|YP_001342391.1| DNA topoisomerase IV subunit B [Marinomonas sp. MWYL1] gi|150838480|gb|ABR72456.1| DNA topoisomerase IV, B subunit [Marinomonas sp. MWYL1] Length = 632 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 247/647 (38%), Positives = 358/647 (55%), Gaps = 24/647 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y+A SI +L GLEPV+ RPGMY TD +HL EVIDN++DE +A +A+ IEV Sbjct: 2 SAKEYNAGSIEVLSGLEPVQKRPGMY---TDTSRPNHLAQEVIDNSVDEALASHADRIEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G L+V DNGRG+PV+ HP+ S +E+ILT LHAGGKF Y+ SGGLHGVG+ Sbjct: 59 ILYKDGSLSVEDNGRGMPVDIHPE-EGISGVELILTKLHAGGKFSGDNYQFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L V V R + F G S L++ V + GT++ F D K F + Sbjct: 118 SVVNALSTSLEVWVRRNGIQYHIGFENGFKTSELKEIGTVGKKNTGTKVKFTADSKYFDN 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L + + E EE++F GLK YL + Sbjct: 178 P-KFSISRLKHLLKAKAVLCSGLHVVFIDQTGSEEAR-----EEWFFQDGLKDYLAQAND 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 L+ E F G +K V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 232 GFVLLPDEPFIGGLTEKT---QGVDWAVQWLPEGGELVTESYVNLIPTAQGGTHVNGLRT 288 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L I+++ + R + + ++D+ +LS I+EP+F+GQTK +L S Sbjct: 289 GLLEAIREFCDFHNLLPRGVKLTAEDVWDRCSYVLSAKIQEPQFSGQTKERLSSRQIVAF 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F +L + + K+ + VI +++RL+ ++V RK + LPGKLAD Sbjct: 349 ISATVKDSFSLWLNSHVEDGKKIADIVINSAQKRLK--DSKKVVRKRVTQGPALPGKLAD 406 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + +ELF+VEGDSAGGSAKQAR + QA+LPLRGKILN S ++ +Q+I D Sbjct: 407 CSGQDSSRSELFLVEGDSAGGSAKQAREKDFQAILPLRGKILNTWEVDSNQVLASQEIHD 466 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + LRY KV I+ DAD DG HIA+L+ F + L+ H+F+ Sbjct: 467 ISVALGVDPGDEDL-SGLRYGKVCILADADSDGLHIATLICALFVRHFPALVNSGHVFVA 525 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA D+E K L + K + RFKGLGEM SQL+ET M Sbjct: 526 MPPLYRIDIGKEVYYALDDEEKDITLHKIAAENKRGTPNVQRFKGLGEMNPSQLRETTMA 585 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 + R L+++ + ++ + ++K +A +R +++ + Sbjct: 586 PDTRRLIQLTMEDKPDTNELLDKLLSK---KRAGDRKSWLETYGNLA 629 >gi|145297604|ref|YP_001140445.1| DNA topoisomerase IV subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|142850376|gb|ABO88697.1| DNA topoisomerase IV, B subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 631 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 246/646 (38%), Positives = 360/646 (55%), Gaps = 23/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV+ Sbjct: 2 STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARTLEVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LFEDQSLEVIDDGRGMPVDIHPE-EGVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALSD + VTV R ++ F RG + L R GTR+ F P F Sbjct: 118 VVNALSDRVEVTVRRDGQVYDIAFERGDKVQELTITGTCGRRNTGTRVRFWPQASYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +L + ++KA L + + K E+ + GLK YL ++ Sbjct: 178 R-FSVTKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + + + F G + + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 FTCLPEQPFVGAFSTE---QSAVDWALCWLPEGGECLAESYVNLIPTPQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ ILS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L N A ++ E I ++ RLR + V RK + LPGKL DC Sbjct: 347 SGVVKDSFSLFLNSNTELAEQIAEICISSAQRRLR--AAKTVVRKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 NCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ + H+++ Sbjct: 465 SVAIGLDPDSEDL-SGLRYGKVCILADADSDGLHIATLLCALFVRHFRTLVNKGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K +L+ + + KGK+ ++RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ + + + Q L +A +R ++++E+ + Sbjct: 584 NTRRLVQLTMGELEEGDETLQLMDMLLAKKRAPDRREWLEEKGNLA 629 >gi|71279877|ref|YP_270827.1| DNA topoisomerase IV subunit B [Colwellia psychrerythraea 34H] gi|71145617|gb|AAZ26090.1| DNA topoisomerase IV, B subunit [Colwellia psychrerythraea 34H] Length = 628 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 238/646 (36%), Positives = 358/646 (55%), Gaps = 26/646 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +D Y++ SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I V Sbjct: 2 TDQYNSDSIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAQNISVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + L ++D+GRG+P + HP+ S +E+I LHAGGKF N +Y+ SGGLHGVGIS Sbjct: 59 LEKDQSLEIIDDGRGMPTDIHPE-EGVSGVELIFCKLHAGGKFSNKSYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V+V R + ++ F G + L + V + GT + F PD F Sbjct: 118 VVNALSTRVDVSVRRDSKVYEMAFENGDKVEELRETGTVGKRNTGTSVKFWPDASYFDTS 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + ++KA L + + E +K ++ + GL YL+ +++ Sbjct: 178 -KFSVRHLTHLLKAKAVLCPGLTIKFHDKIE-------DKKYQWCYEDGLTDYLKDSVKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + + F G + +WA+ W E E SY N I T GGTH +G+R Sbjct: 230 YVSLPEDPFVGSF---TSQLEAADWAVTWLPEGGESIGESYVNLIPTIAGGTHVNGMRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + DD+ ILS+ +++P+FAGQTK +L S V Sbjct: 287 LLESMREFCEFRHLLPRGVKLTPDDIWDKCSYILSIKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L ++ +A L ++ I +++R+R ++V RK + LPGKL DC Sbjct: 347 SGVVKDAFSLWLNEHTDKAELLADFCINNAQKRMR--ASKKVVRKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S +I + ++ D+ Sbjct: 405 GSQDLARTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQILASVEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S +LRY K+ I+ DAD DG HIA+LL F Q L++ H+++ Sbjct: 465 SVALGIDPDSDDL-SELRYGKICILADADSDGLHIATLLCALFMQHFLPLVQAGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE K IL+ + K GK+ + RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDIGKEVFYALDEAEKDGILDRIEAEKKRGKVNVQRFKGLGEMNPPQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ +++ +++ ++K ++ +R ++Q + Sbjct: 584 NTRRLVQLTVDEHSETMELMDMLLSK---KRSPDRKIWLQSKGDMA 626 >gi|296106278|ref|YP_003617978.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99 Alcoy] gi|295648179|gb|ADG24026.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99 Alcoy] Length = 626 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 247/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E + + GL YLQ L Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLQQTLP- 228 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 E K A + SY N I T +GGTH +GLR L Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + ++ EL R + + +DDL S +LS+ ++EP+FAGQTK +L S V N Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Q Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S E LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ PP Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G YA D+E K +I++ + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ + + +NK +A +R +++ + + + Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625 >gi|329893839|ref|ZP_08269910.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088] gi|328923438|gb|EGG30753.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088] Length = 629 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 252/649 (38%), Positives = 360/649 (55%), Gaps = 28/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ I+V + Sbjct: 2 SQYTAQDIEVLTGLEPVRKRPGMY---TDTARPNHLAQEVIDNSVDEALAGFASEIDVVV 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V DNGRG+PV+ HP+ K +E+IL+TLHAGGKF N Y+ SGGLHGVG+SV Sbjct: 59 FKDGSVSVSDNGRGMPVDIHPEQ-GKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L +T+ R ++S F+ G LE + R GT + F PDP+ F Sbjct: 118 VNALSQRLEITIKRDAQVYSMAFAGGEKSRDLEVIDTCGRRNTGTTVHFWPDPQYFDSVN 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 RL + ++KA L ++ + D E E +Y+ GLK YLQ + Sbjct: 178 -ISIPRLKHVLRAKAVLCPGLRVNFLDD-------AKKESESWYYEDGLKDYLQQATDGY 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 ++ +TG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 230 EVLPPTPYTGSFSA---QHSAVDWAVQWLPEGGELITESYVNLIPTSQGGTHVNGLRTGL 286 Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++ + E + R I + +D+ +LSV + +P+F+GQTK +L S +A V Sbjct: 287 LDALRDFCELRSLLPRGIKLAPEDIWDRCAFVLSVKLEDPQFSGQTKERLSSREAAAFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q A +L E I ++ R+R ++V RK LPGKLADCS Sbjct: 347 GVAKDAFSLWLNQETEYAEQLAELCINNAQRRVR--SAKKVVRKKVTSGPALPGKLADCS 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S++I +Q++ ++ Sbjct: 405 GEDPARGELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEVDSQEILASQEVHNIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+L+ F + LI H+++ P Sbjct: 465 VALGVDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFVRHFKPLITAGHVYVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA D+ KQ IL+ + K K+ + RFKGLGEM QL+ET M + Sbjct: 524 PLYRIDVGKEVYYALDDSEKQGILDRIEAENKRAKVNVQRFKGLGEMNPLQLRETTMAPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 R L+++ ++ DT + L+ K + +R ++++ + + + Sbjct: 584 TRRLVQLRLDHG----DDTMQVFDMLLAKKRSSDRRQWLETKGDIAEVL 628 >gi|119503630|ref|ZP_01625713.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium HTCC2080] gi|119460692|gb|EAW41784.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium HTCC2080] Length = 629 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 363/647 (56%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A+ ++V L Sbjct: 2 SQYNADAIEVLTGLEPVRKRPGMY---TDTLRPNHLAQEVIDNSVDEALAGHADQVDVVL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G +++ DNGRG+PV+ HP +E+IL+TLHAGGKF + Y+ SGGLHGVG+SV Sbjct: 59 HSTGGISIQDNGRGMPVDLHP-VQKLPGVEVILSTLHAGGKFSDKNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L +T+ R I++ F G + L + GT+I F PDP+ F Sbjct: 118 VNALSKRLDITIKRDGNIYTMAFEGGEKVEDLAVAGTCGKRNTGTQIRFDPDPQYFDSPN 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL+ + ++KA L ++ +K+ E+ E+++ G+ YL + Sbjct: 178 -FSMPRLIHVLRAKAVLCPGLRVTLLDEKKN-------ERSEWFYEDGISDYLMDATIDY 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 +I + FT + V+WAI W E ++ SY N I T +GGTH +GLR L Sbjct: 230 PVIPEKPFTYHFSGETE---AVDWAIQWLPEGGDVVAESYVNLIPTAQGGTHVNGLRSGL 286 Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E + R + + ++D+ +LS +++P+F+GQTK +L S +A V Sbjct: 287 LEALREFCELRSLLPRGVKLTAEDIWDRCCFVLSSKLQDPQFSGQTKERLSSREAAGFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ EA L E I R++ RLR ++V RK LPGKLADC+ Sbjct: 347 GVAKDAFSLWLNQHTAEAELLAELCINRAQARLR--SAKKVVRKKVTSGPALPGKLADCT 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ELF+VEGDSAGGSAKQARNR QA+LPLRGKILN +++I + ++ ++ Sbjct: 405 SEDPAYGELFLVEGDSAGGSAKQARNREFQAILPLRGKILNTWEVDAQEILASAEVYNIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+L+ F + L+ H+++ P Sbjct: 465 VALGIDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFLRHFQPLVRAGHVYVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA D+ + ILE K K + RFKGLGEM QL+ET MD + Sbjct: 524 PLYRIDVGKEVYYALDDAERNGILERLAAENKRAKPNVQRFKGLGEMNPGQLRETTMDPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++ + DT + + L+ K + +R +++ + D Sbjct: 584 TRRLVQLVLD----ADADTHGTFDMLLAKKRSGDRKTWLESKGDLAD 626 >gi|307609486|emb|CBW98983.1| topoisomerase IV subunit B [Legionella pneumophila 130b] Length = 626 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E + + GL YL+ L Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLRQTLP- 228 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 E K A + SY N I T +GGTH +GLR L Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + ++ EL R + + +DDL S +LS+ ++EP+FAGQTK +L S V N Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Q Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S E LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ PP Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G YA D+E K +I++ + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ + + +NK +A +R +++ + + + Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625 >gi|109896764|ref|YP_660019.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c] gi|109699045|gb|ABG38965.1| DNA topoisomerase IV subunit B [Pseudoalteromonas atlantica T6c] Length = 629 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 351/645 (54%), Gaps = 21/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y+A +I +L GL+PV+ RPGMY TD +HL EVIDN++DE + G+A+ I+V Sbjct: 2 SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALGGFASSIKVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ H + S +E+I+T LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHPDQSLEVTDDGRGMPVDIHAE-EGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V++ R +++ F G + L+ + + GTR+ F PD + + D Sbjct: 118 VVNALSKRVEVSIRRDGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPD-EQYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F +LL + ++KA L ++ + E E+YF GLK YL + + Sbjct: 177 AKFSVTKLLHVLRAKAVLCPGLRIRFDDK-------VSKETHEWYFEDGLKDYLYQSVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ T SY N I T +GGTH +GLR L Sbjct: 230 SISLPADAPFVGAVSGNTEAVDWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ +LS +++P+FAGQ K +L S A V Sbjct: 290 ESMREFCEFRNLLPRGIKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ A +L E I ++ RLR + ++V RK + LPGKL DCS Sbjct: 350 IVKDAFSLWLNQHTAIAEQLAEMCISNAQTRLR--QSKKVARKKVTQGPALPGKLTDCST 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q+I D+ Sbjct: 408 QDTGRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S LRY KV I+ DAD DG HIA+LL F + L+E H ++ PP Sbjct: 468 ALGIDPDSDDL-SGLRYNKVCILADADSDGLHIATLLCALFVKHFRTLVENGHAYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA DE KQ IL+ K GK+ + RFKGLGEM QL+ET MD N Sbjct: 527 LFRIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I L+ L +A +R +++ + + D Sbjct: 587 RRLVQLTIEDPTEMLETMDML---LAKKRAGDRKSWLESKGNMAD 628 >gi|294139238|ref|YP_003555216.1| DNA topoisomerase IV subunit B [Shewanella violacea DSS12] gi|293325707|dbj|BAJ00438.1| DNA topoisomerase IV, B subunit [Shewanella violacea DSS12] Length = 628 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 251/647 (38%), Positives = 364/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + SI +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IE++ Sbjct: 2 TNQYTSDSIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEIT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHKDNSLEVIDDGRGMPVDIHPE-EGISGVELILTKLHAGGKFSNDNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + +TV R ++ F G + L + R GTR+ F P P F Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFENGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +L + ++KA L +K ++ E +E+++ GL YLQ+ ++ Sbjct: 178 N-FSVPKLTYLLKAKAVLCPGLKIKFTNK-------QTDEVQEWFYESGLTDYLQSSTKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 ++ E F G + V+WAI W E E SY N I T GGTH +G R Sbjct: 230 AIMLPEEPFIGSLKGNNE---AVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ + ILS+ + +P+F+GQTK KL S + V Sbjct: 287 LLESMREFCEFRNLMPRGIKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L N +A L E I + +RL+ ++V RK LPGKL DC Sbjct: 347 SGIVRDSFSLWLNTNTEQALALAEMCINNAHKRLK--SAKKVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q++ D+ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSSQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE KQ IL+ + KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDIGKEIFYALDEAEKQGILDRIAAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 N R L+++ I+ ++ L ++ +R +++ + + D Sbjct: 584 NTRRLVQLTIDDVEETISMMDML---LAKKRSGDRKIWLESKGNLAD 627 >gi|284008571|emb|CBA75135.1| DNA topoisomerase IV subunit B [Arsenophonus nasoniae] Length = 631 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 367/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AGYA I+V L Sbjct: 4 SNYNAEAIEVLSGLEPVRRRPGMY---TDTSRPNHLAQEVIDNSVDEALAGYAKRIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISV Sbjct: 61 YEDQSLEVIDDGRGMPVDIHPE-KKVPAVELILGQLHAGGKFSNKNYQFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV+R + I+ F G + LE + GT + F PD F D Sbjct: 120 VNALSKRIEVTVSRDSQIYRIAFENGEKVQELEVIGSCAKRTTGTGVRFWPD-SHFFDNP 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL+ + ++KA L V+ + E + + + GL YL + Sbjct: 179 RFSISRLVHVLKAKAVLCPGVEIIFKDKINNTE-------QTWRYNDGLTDYLMEAVNGL 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTLPEKAFVGNFAGQLEM---VDWALLWLPEGGELLTESYVNLIPTAQGGTHVNGLRQGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + DD+ +LSV +++P+FAGQTK +L S + V Sbjct: 289 LDAMREFCEYRNLLPRGVKLTGDDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAAFVS 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN EA +L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 349 GVVKDAFSLWLNQNVQEAEQLAELTISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLNFTELFLVEGDSAGGSAKQARDREYQAIMPLRGKILNTWEVSSDEVLASQEVHDIS 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY K+ ++ DAD DG HIA+LL F + L++ H+++ P Sbjct: 467 VAIGIDPDSNDL-SQLRYGKICVLADADSDGLHIATLLCALFVRHFPTLVKAGHIYIAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K +L+ + +GK + RFKGLGEM +QL+ET +D N Sbjct: 526 PLYRIDLGKEVYYALDEGEKAAVLDRLS-YKRGKPNVQRFKGLGEMNPTQLRETTLDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ IN D + ++T ++ L+ K A++R ++Q + I+ Sbjct: 585 RRLVQLIINDD--NYQETLAMMDMLLAKKRAEDRRNWLQNKGDAIE 628 >gi|297191607|ref|ZP_06909005.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC 25486] gi|197719347|gb|EDY63255.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis ATCC 25486] Length = 708 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 238/706 (33%), Positives = 346/706 (49%), Gaps = 52/706 (7%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 +P + NY A + +LEGLE VR RPGMYIG TD + L H E+ID Sbjct: 2 TAESSVPSTALLTADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLLHCLWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE + G+ + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGGKF Sbjct: 62 NSVDEALGGHCDHIEVILHEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199 +Y SGGLHGVG SVVNALS L V V R F RG+P E Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRGGATHMISFRRGVPGIFTESGPDAPFDP 180 Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 + + GTR+ + D +IF A L + + A+L + + Sbjct: 181 ANGLRKGKRVPKARTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVHDE 240 Query: 249 KEIAEKYGIPE-KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + E G + E F F GG+ + + +++ + TG+ Sbjct: 241 RGLTEAGGEGKSVETFRFDGGISEFCEYLAQDKPVCDVLRLTGQGTFKETVPVLDDRGHM 300 Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W S+ N I T +GGTH +G ++T+ + + + Sbjct: 301 TPTEVTRELGVDIALRWGTGYDTNLKSFVNIIATPKGGTHVTGFERSVTKTMNEVLRSAK 360 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A R V N + +L Sbjct: 361 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFL 420 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 421 TSTKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVER 480 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 481 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 540 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL RI Sbjct: 541 SGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 600 Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + ++ L EF++ G + K I R+KGLGEM A QL ET MD Sbjct: 601 LIQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRFKDSIQRYKGLGEMDADQLAETTMDPR 660 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 661 HRTLRRINIGD----LESSEQIFDLLMGNEVAPRKEFITSSAATLD 702 >gi|152978653|ref|YP_001344282.1| DNA topoisomerase IV subunit B [Actinobacillus succinogenes 130Z] gi|150840376|gb|ABR74347.1| DNA topoisomerase IV, B subunit [Actinobacillus succinogenes 130Z] Length = 641 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 254/654 (38%), Positives = 367/654 (56%), Gaps = 32/654 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+ +I +L+GLEPV++RPGMY TD +HL EVIDN++DE +AG+A+ IEV L Sbjct: 4 NDYDSINITVLKGLEPVQIRPGMY---TDTTRPNHLGQEVIDNSVDEALAGFASKIEVVL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V DNGRG+PV+ HP S +E+I+T LHAGGKF N+ YE +GGLHGVG+SV Sbjct: 61 HSDQSLEVTDNGRGMPVDIHP-TEKISGVEVIMTKLHAGGKFSNANYEFAGGLHGVGVSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+ + VTV R ++ F+ G + LE R GT + F+P+PK F Sbjct: 120 VNALSERVDVTVRRGGQVYHIAFADGEKVEELEVVGTCGRRNTGTSLHFKPNPKYFDSD- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ ++ E E + + GL YL Sbjct: 179 KFSVSRLRHLLRAKAVLCSGLEIKFTDQVNNTE-------ESWCYQDGLSDYLSETAAEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G+ + G VEWA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 VTVPETPFVGEFKGSGE---AVEWALFWLPEGGELTTESYVNLIPTIQGGTHVNGLRKGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + ++ E + + + +DDL +LS+ + + +FAGQTK +L S ++ V Sbjct: 289 IDAMAEFCEFHNLLPKGVKLTADDLWDRCAYVLSLKMHDAQFAGQTKERLSSRESAVFVG 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L N A L E I ++ RLR ++V RK LPGKLADCS Sbjct: 349 GVVKDAFSLWLNNNMEPAKLLAEMTINSAQRRLR--AAKKVVRKKLTSGPALPGKLADCS 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN SE++ ++++ ++ Sbjct: 407 QQDLERTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLGSEEVHNIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L+E H+++ P Sbjct: 467 VALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEDGHVYVAMP 525 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K +L+ +GK + RFKGLGEM SQL+ET M+ + Sbjct: 526 PLYRIDLGKEVYYALDENEKDAVLDRLSGK-RGKPNVQRFKGLGEMNPSQLRETTMEPST 584 Query: 638 RTLLRVEINKDLNSLK--------DTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + + +T + ++ L+ K A++R ++Q + D Sbjct: 585 RRLVQLTYEEPIATESAVKNSQQNETIELMDMLLNKKRAEDRKNWLQTKGDQAD 638 >gi|119717182|ref|YP_924147.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614] gi|119537843|gb|ABL82460.1| DNA topoisomerase IV subunit B [Nocardioides sp. JS614] Length = 710 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 229/708 (32%), Positives = 346/708 (48%), Gaps = 57/708 (8%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 +++ + + + + Y+A+ + +LEGLE VR RPGMYIG TD + L H E+ Sbjct: 7 AARRTDRHDRTGTTRSPTIDNTYNAAHLLVLEGLEAVRKRPGMYIGSTDTRGLMHCLWEI 66 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDN +DE + G+A+ +EV+L +G V D+GRGIP + PK +E++ T LHAGG Sbjct: 67 IDNGVDEALGGHASHVEVTLHPDGSAEVYDDGRGIPTDKEPK-TGLPGVEVVATKLHAGG 125 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--------- 192 KF +Y +GGLHGVG+SVVNAL+ + + V R F RG+P Sbjct: 126 KFGGGSYVATGGLHGVGLSVVNALATRMDIDVDRSPARQGISFRRGVPGVFSGDGPQADF 185 Query: 193 -------LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCW 245 + + + GTRI F PD +IF A F L+ + +++ ++ Sbjct: 186 EARSGLTRKGSRVAKGRSGTRIVFWPDRQIFTKDAQFVYEDLVARARQTSFIVPGLELVI 245 Query: 246 SCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK-------------- 291 + P +E+F GG+ + + + G Sbjct: 246 RDLRGPD-----PVEEKFRHDGGIAEFADFLAPDEPVTDILRLQGTDTFTETVPLLDEKG 300 Query: 292 --TEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL 348 T ++ V+ A+ W + S+ N I T +GGTH SG A+TR + + Sbjct: 301 QMTPQEVERELQVDVALRWGTGYDTVLRSFVNVIATPKGGTHVSGFEQAVTRTFNEVMKS 360 Query: 349 TQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDH 406 + + +I DD++ +++V + EP+F GQTK L + A+ V + Sbjct: 361 AKVLKVNDDDVIKDDVLEGMTCVVTVRLSEPQFEGQTKEILGTPAARTVVRRVVSAELKK 420 Query: 407 YLVQNPIEATKLLEWVIE----RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIA 461 +L + V+E ++ R+ R+ +E RK A+ LP KLADC Sbjct: 421 FLTSTKRAEKAQAKLVMEKVAGAAKTRITARQHKETQRRKNALESSALPSKLADCRAADN 480 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 TELFIVEGDSA G+AK ARN QA+LP+RGKILNV A + N + ++Q +G Sbjct: 481 DRTELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKASVGDMLKNAECASIIQVVG 540 Query: 522 CRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR 581 + + + RY ++I M DAD DGAHI LL T FY+ M +LI++ ++ PPL R Sbjct: 541 AGSGRTFDLDARRYGRIIFMADADSDGAHIRCLLATLFYKYMPELIQEGRVYTAVPPLHR 600 Query: 582 I-----TQG-TKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634 + +G K VY + ++ Q+ L E KK G + K + R+KGLGEM A QL ET MD Sbjct: 601 VEISNPKKGMEKYVYTYSDDELQRKLAELKKKGVRWKDPVQRYKGLGEMDADQLAETTMD 660 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I+ + LMG+ R +FI + A +D Sbjct: 661 PRHRTLRRITIDNAEEAAG----VFELLMGSDVAPRKEFIVQGAYEVD 704 >gi|52840928|ref|YP_094727.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628039|gb|AAU26780.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 626 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E +Y+ GL YL L Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWYYEQGLTDYLLQTLP- 228 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 E K A + SY N I T +GGTH +GLR L Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + ++ +L R + + +DDL S +LS+ ++EP+FAGQTK +L S V N Sbjct: 288 EAMSEFCDLRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Q Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 406 TDLSQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S E LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ PP Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G YA D+E K +I++ + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ + + +NK +A +R +++ + + + Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRAADRKLWLETKGNLAE 625 >gi|47459221|ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mobile 163K] gi|47458550|gb|AAT27872.1| topoisomerase IB subunit B [Mycoplasma mobile 163K] Length = 638 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 234/648 (36%), Positives = 351/648 (54%), Gaps = 32/648 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NYD+ SI+ + LE V+ RPGMYIG TD K LHHL E++DN++DE IA +AN I+V+L Sbjct: 4 NYDSKSIKSYKDLEAVKKRPGMYIGSTDAKGLHHLVWEIVDNSIDEAIANFANKIQVTLT 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V DNGRGIPV+ K+T+E + T LH GGKF + Y+ SGGLHGVG SVV Sbjct: 64 KDGSVIVEDNGRGIPVDKF--SDQKTTVEAVFTELHTGGKFGDGAYKTSGGLHGVGSSVV 121 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L TV R I+ F G +S K KRGT+I F PD I +A Sbjct: 122 NALSIKLIATVYRDKKIYETIFENGGEISQSTKIIGSTTKRGTKIEFWPDY-IIFKRAKL 180 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + + + ++L ++ + +KE F + G+ ++ + Sbjct: 181 SYEIISERLRESSFLIQNLEIVLVDE-------NTNQKETFKYENGIVEFVDFINSGKDA 233 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I+S+ KK VE AI + + I S+ N I T +GG+HE+G++ ALT+ Sbjct: 234 INSKTIYINDTKKDI---NVEIAIQYTDSYNETIVSFVNNIKTRDGGSHENGVKTALTKV 290 Query: 342 IKKYAELTQNKRAISII--SDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 +Y + + + +D+ ++S+ I E EF GQTK KL + +A+ E Sbjct: 291 FNEYVKDKNLLKGKNNSFEGNDIREGITIVISLRIPENILEFVGQTKDKLGTQEAKSITE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGKLA 454 + L + +L +N +A K++ + + + R+ + R+ +R+T + L GKL+ Sbjct: 351 DILSNSLWIWLNENKEDALKIINKIKKSQDSRIAAKNARKESRETKNSLKEQKILSGKLS 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 A ELF+VEGDSAGGSAK RN QA+LPL+GK++N + N++I Sbjct: 411 PARSKKASEKELFLVEGDSAGGSAKLGRNSQFQAILPLKGKVINCEKTKLIDVLKNEEIS 470 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ +G + + + Y KV+IMTDADVDG+HI LLLTF Y+ M LIE +++ Sbjct: 471 TIINTIGAGIGADFDLKKANYHKVVIMTDADVDGSHIQVLLLTFLYRYMKPLIEAGMVYI 530 Query: 575 ISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPLF+IT K Y DE+ ++++ + EI R+KGLGEM QL ETA Sbjct: 531 ALPPLFKITNKKTKKFKYVLDEDELNNLMKK-----ENDFEIQRYKGLGEMNPDQLWETA 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ RTL++VEI L T+ ++ LMG + + R ++I + F Sbjct: 586 MNPETRTLIKVEIEDAL----ITERRVSTLMGDQIELRKEWINKNVVF 629 >gi|78484709|ref|YP_390634.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2] gi|78362995|gb|ABB40960.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2] Length = 628 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 241/646 (37%), Positives = 363/646 (56%), Gaps = 25/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY+AS I +L GL+PVR RPGMY TD +HL EVIDN++DE IAG+A+ I V+ Sbjct: 2 SENYNASEIEVLTGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAIAGHASKIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 +G + V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 HFADGSIAVEDDGRGMPVDIHPEQ-GMPGVEVILTKLHAGGKFSNKAYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + + + R + F +G+ + PLE KV + GT + F PD F D Sbjct: 118 VVNALSKRVEIQIKRDGKVHQIAFEQGLVVEPLEVIGKVGKKNTGTTLRFWPDA-RFFDT 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + +L + ++KA LS + + + E E+ + GL+ YL L+ Sbjct: 177 PKYALTKLKHLLRAKAVLSPGLHVTFIDE-------VSNETSEWQYEDGLRDYLNQALDG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + E F G+T + A + + SY N I T GGTH +GLR T Sbjct: 230 VDRVPVEGFVGETNGENE-GVAWAIAWLAEPADTVLESYVNLIPTPLGGTHVNGLRAGAT 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I+++ E R + + +D+ + +LS +REP+FAGQTK +L S + + Sbjct: 289 DAIREFCEFRNLLPRGVKVTPEDVWQNVAFVLSAKVREPQFAGQTKERLSSRECVPFISG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D +L Q+ A K+ E VI + R ++ K ++ RK LPGKLADC++ Sbjct: 349 VVKDSLSLWLNQHTDVAEKIAEIVINNAHNRNKKAK--KITRKKITSGPALPGKLADCTE 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + + TELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN S ++ + +I D+ Sbjct: 407 SDLNRTELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDSSQVLASSEIHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S LRY K+ I+ DAD DGAHIA+L+ F + L+E H+++ PP Sbjct: 467 AIGVDPGSDDL-SGLRYGKICILADADSDGAHIATLICALFVKHFPKLVENGHVYVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE + +L+ + GK++++RFKGLGEM QL+ET M Sbjct: 526 LYRIDVGKQLFYALDESERAGVLDRIESEKMPGKVQVTRFKGLGEMNPKQLRETTMMPET 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + ++ ++KL+ K + +R +++E+ + Sbjct: 586 RRLIQLGL-----DIESADPMMDKLLAKKRSGDRKIWLEEKGDLAE 626 >gi|303252116|ref|ZP_07338285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248277|ref|ZP_07530303.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649098|gb|EFL79285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855211|gb|EFM87388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 637 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + +T + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|313238122|emb|CBY13220.1| unnamed protein product [Oikopleura dioica] Length = 613 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 235/640 (36%), Positives = 352/640 (55%), Gaps = 46/640 (7%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG DE+ LHH EV+DN++DE +AGY + I+V++ +G +++ DNGRGIPV+ HPK Sbjct: 1 MYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSRIKVAIHVDGSVSISDNGRGIPVDMHPK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 F +E++LT LHAGGKF Y+ SGGLHGVG VNAL+D + R + Sbjct: 61 F-GIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCVNALADWFRADIMRNGKVHRIA 119 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F RG L +V NK GT ITF PD IF D F RL + A+L+ + Sbjct: 120 FERGKTTEQLHVVGEVDPNKTGTTITFFPDATIFVDTIEFKFDRLATRLRELAFLNPGLI 179 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------- 293 ++ +K FY+ G++ ++ EN+++I + + Sbjct: 180 IDLEDER-----PESAKKASFYYAKGIEEFVVQLGENKTVIHDDPVVLNGKRQIELDYDG 234 Query: 294 KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-- 350 K+ T + + + +I + N+I +GGTH +G R ALTRGI +YA++ + Sbjct: 235 KQTTDDVFADVVFQYNDSYNDQILCFANSIPNGDGGTHLTGFRTALTRGINQYAKVNKIL 294 Query: 351 NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQ 410 + ++ DD+ V ++SV + P F+ QTK KLV+ + + V + + + Y + Sbjct: 295 KDKDPALSGDDVREGLVCVISVKMPNPRFSSQTKDKLVNTEIEGVVSSIVYEGIMQYFDE 354 Query: 411 NPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 NP A K++E + + R RK RE RK+A+ LPGKLADCS+ +EL+IVE Sbjct: 355 NPALARKVIEKSVNAARAREAARKARETVRKSALSGGGLPGKLADCSERDPAKSELYIVE 414 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS---- 526 GDSAGGSAKQ R+R QA+LPLRGK++NV A + N++I +L+ A+G Sbjct: 415 GDSAGGSAKQGRDRRTQAILPLRGKLINVEKARLHRALQNKEIQNLITAIGAGIGDGEQE 474 Query: 527 -QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 + + +RY KV+IMTDADVDG+HI +LLLTFF + M +L+++ L++ PPL+ +T+ Sbjct: 475 GSFNIDKVRYHKVVIMTDADVDGSHIRTLLLTFFCRHMPELVKRGFLYIAQPPLYLVTR- 533 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 E KQ ++I RFKGLGEM A QL ET MD R LRV + Sbjct: 534 --------EGEKQ-----------HGVQIKRFKGLGEMNAKQLFETTMDPETRQFLRVRL 574 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++D + + + LMG + R +FI++ A + ++ Sbjct: 575 DED--NAVEADKMFDVLMGDIVEPRKRFIEDNALNVRNLD 612 >gi|297202866|ref|ZP_06920263.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] gi|197715205|gb|EDY59239.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] Length = 707 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 238/706 (33%), Positives = 345/706 (48%), Gaps = 52/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDEALGGYCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN- 201 F +Y SGGLHGVG SVVNALS L V V R + F RG+P + + Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRAGNTHAISFRRGVPGAFAANGPDAKFD 180 Query: 202 --------------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 + GTR+ + D +IF A L + + A+L + Sbjct: 181 AASGLRKTKRIPKTRTGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + E E E F F GG+ + + ++ + F+G+ Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEYLASDKPVNDVLRFSGQGSFKETVPVLDDHGQM 299 Query: 294 --KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W S+ N I T +GGTH +G A+T+ + + + Sbjct: 300 TPTEVTRELGVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVTKTMNEVLRAKK 359 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A+R V + +L Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISKELKAFL 419 Query: 409 VQNPIEATKLLEWVIE----RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463 +A V+E + R+ R+ ++ RKTA+ LP KLADC + Sbjct: 420 TSTKRDAAAQARVVMEKAVSAARTRIAARQHKDAQRRKTALETSSLPAKLADCRSDDVDR 479 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNVECGAIIQVIGAG 539 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K+I+MTDADVDG+HI LLLT F + M ++E +F PPL RI Sbjct: 540 SGRTFDIDAARYGKIIMMTDADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 599 Query: 583 ----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + ++ L EF+ G + K I R+KGLGEM A QL ET MD Sbjct: 600 LVQPKKGQDKYVYTYSDRELREKLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPR 659 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + L+ + + LMG R +FI A+ +D Sbjct: 660 HRTLRRINL----ADLEAAEQVFDLLMGNDVAPRKEFISGSAATLD 701 >gi|127511483|ref|YP_001092680.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4] gi|126636778|gb|ABO22421.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4] Length = 628 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 244/646 (37%), Positives = 360/646 (55%), Gaps = 26/646 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATRIDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N+ Y+ SGGLHGVGIS Sbjct: 59 LHKDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNNNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + +TV R ++ F G + L R GTR+ F P F Sbjct: 118 VVNALSNRVEITVRRSGQVYEMAFEHGDKVEELTVTGTCGRRNTGTRVHFWPTASYFDSV 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +L+ + ++KA L ++ ++ + EE+ + GL YL++ + Sbjct: 178 N-FSIPKLIYLLRAKAVLCPGLRIKFTNK-------QTGDVEEWCYESGLTDYLKSSTQG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + E F G V+WAI W E + SY N I T GGTH +G R Sbjct: 230 ALTLPEEPFIGSMAGNTE---AVDWAITWLPEGGDSLNESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ + ILS+ +++P+FAGQTK KL S + V Sbjct: 287 LLEAMREFCEFRNLIPRGIKLSPEDIWDRSSFILSIKMQDPQFAGQTKEKLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L + +A L E I +++RL+ K +V RK LPGKL DC Sbjct: 347 SGIVRDAFSLWLNTHTDQAEALAEMCISNAQKRLKAAK--KVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SVAIGCDPDSNDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKVLVEKGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFR+ G + YA DE KQ IL+ + KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRVDVGKEVYYALDEAEKQGILDRISAEKKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ I+ ++L L ++ +R +++ + Sbjct: 584 NTRRLVQLTIDDAEDTLAIMDML---LAKKRSGDRKTWLETKGDLA 626 >gi|332172215|gb|AEE21469.1| DNA topoisomerase IV, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 629 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 352/645 (54%), Gaps = 21/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y+A +I +L GL+PV+ RPGMY TD +HL EVIDN++DE + G+A+ I+V Sbjct: 2 SNQYNADAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALGGFASSIKVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ H + S +E+I+T LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHPDQSLEVTDDGRGMPVDIHAE-EGISGVELIMTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V++ R+ +++ F G + L+ + + GTR+ F PD + + D Sbjct: 118 VVNALSKRVEVSIRREGSVYQIAFENGEKVEDLKVVDTCGKRNSGTRVHFWPD-EQYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A F +LL + ++KA L ++ + E E+YF GLK YL Sbjct: 177 AKFSVTKLLHVLRAKAVLCPGLRIRFDDK-------VSKETHEWYFEDGLKDYLYQSTGE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ T SY N I T +GGTH +GLR L Sbjct: 230 SITLPADTPFVGAVSGNTEAVDWAVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R I + +D+ +LS +++P+FAGQ K +L S A V Sbjct: 290 EAMREFCEFRNLLPRGIKLTPEDIWDRCSYVLSTKMQDPQFAGQIKERLSSRQAAAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ A +L E I ++ RLR + ++V RK + LPGKL DCS Sbjct: 350 IVKDAFSLWLNQHTGVAEQLAEMCISNAQSRLR--QSKKVARKKVTQGPALPGKLTDCST 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q+I D+ Sbjct: 408 QDTGRSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S+ LRY KV I+ DAD DG HIA+LL F + L+E H ++ PP Sbjct: 468 ALGIDPDSEDL-SGLRYNKVCILADADSDGLHIATLLCALFVRHFRALVENGHAYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA DE KQ IL+ K GK+ + RFKGLGEM QL+ET MD N Sbjct: 527 LFRIDVGKEVFYALDEGEKQGILDRIAAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I + L+ L +A +R +++ + + D Sbjct: 587 RRLVQLTIEEPSEMLETMDML---LAKKRAGDRKSWLESKGNMAD 628 >gi|307246171|ref|ZP_07528253.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853106|gb|EFM85329.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 637 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 252/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A+RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSASRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSETLKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + +T + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|54293674|ref|YP_126089.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Lens] gi|53753506|emb|CAH14961.1| Topoisomerase IV subunit B [Legionella pneumophila str. Lens] Length = 626 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 246/644 (38%), Positives = 356/644 (55%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAEAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASRIIVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGIIYQMTFANGDKLCELNETGVTKKRETGTVIRFWPNGKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L + ++KA L + + E + + GL YL+ L Sbjct: 178 -KISVKHLTHVLRAKAVLCSGLSMTFINKITNEE-------MNWCYEQGLTDYLRQTLP- 228 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 E K A + SY N I T +GGTH +GLR L Sbjct: 229 -EDYLPEEPFAGAFKSDEATVDWALAWSDSANGNLNESYVNLIPTIQGGTHVNGLRSGLF 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + ++ EL R + + +DDL S +LS+ ++EP+FAGQTK +L S V N Sbjct: 288 EAMSEFCELRNLLPRGVKLTADDLWESCQYVLSIKMKEPQFAGQTKERLSSRQTSGLVSN 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Q Sbjct: 348 VIKDAFAIWLNQHRNQGEAIAALAIERAQKRLK--QAKQVARKRVSQGPALPGKLADCLQ 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 406 TDLGQAELFLVEGDSAGGSAKQARNKDYQAILPLRGKILNSWEVDSSQVLASQEIHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S E LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ PP Sbjct: 466 AIGVDPGSSDL-EGLRYGKICILADADSDGAHIATLICALFLRHFKPLVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G YA D+E K +I++ + K K+ + RFKGLGEM QL+ET MD N R Sbjct: 525 LYRIDAGKLIHYALDDEEKNRIVQHLSQTTKSKVNVQRFKGLGEMNPIQLRETTMDPNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ ++ + + +NK +A +R +++ + + + Sbjct: 585 RLVQLTLDDEEQTEAIMDMMLNK---KRASDRKLWLETKGNLAE 625 >gi|163749330|ref|ZP_02156579.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99] gi|161331049|gb|EDQ01975.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99] Length = 628 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 361/647 (55%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y + SI +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IE++ Sbjct: 2 TKQYTSDSIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEIT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+ILT LHAG KF N Y+ SGGLHGVGIS Sbjct: 59 LHKDNSLEVIDDGRGMPVDIHPE-EGISGVELILTKLHAGAKFSNDNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + +TV R ++ F G + L + R GTR+ F P P F Sbjct: 118 VVNALSSRVEITVRRSGIVYDIAFEHGDMVEELRETGTCGRRNTGTRVHFWPIPSYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L + ++KA L +K ++ E +E+ + GL YLQ+ +++ Sbjct: 178 N-FSVSKLTYLLKAKAVLCPGLKIKFTNK-------QTDEVQEWLYESGLTDYLQSSVKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 ++ E F G + + V+WAI W E E SY N I T GGTH +G R Sbjct: 230 ALMLPEEPFIGSLQGN---KEAVDWAITWLPEGGEYLNESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ + ILS+ + +P+F+GQTK KL S + V Sbjct: 287 LLESMREFCEFRNLMPRGVKLTPEDIWDRSSFILSIKLLDPQFSGQTKEKLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L N +A L E I + +RL+ ++V RK LPGKL DC Sbjct: 347 SGIVRDAFSLWLNTNIEQALALAEMCINNAHKRLK--SAKKVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ ++++ ++ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASEEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC +LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SVAIGCDPDCSDI-SELRYGKICILADADSDGLHIATLLCALFMKHYKILVEKGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE KQ IL+ KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDVGKEIFYALDEAEKQGILDRIAAEKMKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 N R L+++ I+ ++ L ++ +R +++ + D Sbjct: 584 NTRRLVQLTIDDVEETVALMDML---LAKKRSGDRKIWLESKGDLAD 627 >gi|302554628|ref|ZP_07306970.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] gi|302472246|gb|EFL35339.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] Length = 706 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 239/705 (33%), Positives = 348/705 (49%), Gaps = 51/705 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + GY + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDEALGGYCDHIEVILQDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192 F +Y SGGLHGVG SVVNALS L V V R + F RG+P + Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFSASGPDAKFE 180 Query: 193 ----LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 + K+ + + GTR+ + D +IF A L + + A+L + + Sbjct: 181 AGGLRKVKKIPKTRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDE 240 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------------ 296 + E E E F F GG+ + + ++ + F+G+ + Sbjct: 241 FGLGEGGSKGE-ESFRFDGGISEFCEYLASDKPVCDVLRFSGQGTFRETVPVLDEHGQMT 299 Query: 297 ----THRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351 T V+ A+ W S+ N I T +GGTH +G A+ + + + Sbjct: 300 PTQVTRELDVDVAMRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVATTMNEVLRTKKL 359 Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 R DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 360 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKGFLT 419 Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 +A + V+E+ R+ + RKTA+ LP KLADC + + Sbjct: 420 STKRDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRS 479 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + Sbjct: 480 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGS 539 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582 + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 540 GRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIEI 599 Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 +G K VY + + + L EF+ G + K I R+KGLGEM A QL ET MD Sbjct: 600 VQPKKGQDKYVYTYSDRELRDKLMEFQSKGIRYKDSIQRYKGLGEMDADQLAETTMDPRH 659 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ ++ L+ + + LMG R +FI A+ +D Sbjct: 660 RTLRRINLSD----LEAAEQVFDLLMGNDVAPRKEFISNSAATLD 700 >gi|307257307|ref|ZP_07539077.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864157|gb|EFM96070.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 637 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 253/650 (38%), Positives = 370/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSEALKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVISETE---AVSWALTWLPEGGELVAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTTDDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + DT + ++ L+ K A++R +++Q R + Sbjct: 585 TRRLVQLTLDELDVAEENEPDTFEIMDMLLAKKRAEDRKQWLQNRGDEAE 634 >gi|238782858|ref|ZP_04626887.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970] gi|238716281|gb|EEQ08264.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970] Length = 631 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 248/648 (38%), Positives = 359/648 (55%), Gaps = 26/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDGQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL ++ Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDLVNNTE-------QRWCYADGLTDYLMEAVD 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GLITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ D + + T ++ L+ K +++R ++QE+ + Sbjct: 583 NTRRLVQLT--IDDDDIDKTMAMMDMLLAKKRSEDRRNWLQEKGDTAE 628 >gi|328885549|emb|CCA58788.1| Topoisomerase IV subunit B [Streptomyces venezuelae ATCC 10712] Length = 705 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 241/705 (34%), Positives = 351/705 (49%), Gaps = 53/705 (7%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 +P S + NY A + +LEGLE VR RPGMYIG TD + L H E+ID Sbjct: 2 TAETSVPSSALLTADRDASNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCIWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE + GY + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGGKF Sbjct: 62 NSVDEALGGYCDHIEVILHDDGSVEVQDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199 +Y SGGLHGVG SVVNALS L V V R + + F RG+P E+ Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHAISFRRGVPGIFTEQGPDSPFDP 180 Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 + + GTR+ + D +IF A L + + A+L + + Sbjct: 181 GNGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRDE 240 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293 +++A +E F F GG+ + + +++++ + TG+ Sbjct: 241 RDLA--GIGKSEETFRFDGGISEFCEYLAQDKAVCDIQRLTGQGTFKETVPVLDERGHMT 298 Query: 294 -KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351 + T V+ A+ W + S+ N I T +GGTH SG A+T+ + + + Sbjct: 299 PTEVTRELAVDVALRWGTGYDSTVKSFVNIIATPKGGTHVSGFEQAVTKTVNEVLRSAKM 358 Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 R DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 359 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEILGTSAARRIVANVVAKELKAFLT 418 Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 +A V+E+ R+ + RKTA+ LP KLADC + + Sbjct: 419 STKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVERS 478 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + Sbjct: 479 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGS 538 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582 + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL RI Sbjct: 539 GRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIEL 598 Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 +G K VY + + ++ L EF++ G + K I R+KGLGEM A QL ET MD Sbjct: 599 VQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDAIQRYKGLGEMDADQLAETTMDPRH 658 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I L + + LMG R +FI A+ +D Sbjct: 659 RTLRRINIGD----LDAAEQVFDLLMGNDVAPRKEFITGSAATLD 699 >gi|260913631|ref|ZP_05920107.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC 43325] gi|260632170|gb|EEX50345.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis ATCC 43325] Length = 632 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 258/646 (39%), Positives = 366/646 (56%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY A+ I IL+ LEPV++RPGMY TD +HL EVIDN++DE +AGYA IEV Sbjct: 2 TNNYSANEITILKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE SGGLHGVGIS Sbjct: 59 LHKDQSLEVIDNGRGMPVDIHP-VEKVSGVEVILTKLHAGGKFSNKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R ++ F G+ + LE + + D Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVRFKPNPKYFDSD 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + E + + + GL YL + Sbjct: 178 KFSISRLRHLLRAKAVLCSGLEIKFIDKVNDTE-------DVWLYEDGLSDYLSEAVNGL 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F G + + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 LTLPESPFIGDFKGD---KEAVSWALLWLPEGGELLGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S + V Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN +A +L E I ++ RLR ++V RK + LPGKLADCS Sbjct: 348 GVVKDAFSLWLNQNVQQAEQLAEMAISSAQRRLR--ASKKVVRKKLVSGPALPGKLADCS 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 Q TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN SE++ ++ +I D+ Sbjct: 406 QQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSSEQVLSSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K+ IL+ K+ KGK + RFKGLGEM QL+ET MD N Sbjct: 525 PLYRIDLGKEVFYALDEGEKEAILDRL-KNKKGKPNVQRFKGLGEMNPIQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ NK+ ++ +T + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYNKEEDNGAETLELMDMLLAKKRSEDRKNWLQTKGDQVD 629 >gi|254391061|ref|ZP_05006269.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC 27064] gi|326443881|ref|ZP_08218615.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC 27064] gi|197704756|gb|EDY50568.1| DNA topoisomerase IV subunit B [Streptomyces clavuligerus ATCC 27064] Length = 705 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 238/705 (33%), Positives = 352/705 (49%), Gaps = 53/705 (7%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVID 83 +P + + NY A + +LEGLE VR RPGMYIG TD + L H E+ID Sbjct: 2 TAETSVPSTTLLTAERDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIID 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE + GY + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGGKF Sbjct: 62 NSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---- 199 +Y SGGLHGVG SVVNALS L V V R + + F RG+P E+ Sbjct: 121 GGGSYAASGGLHGVGASVVNALSARLDVEVDRNGSTHAISFRRGVPGIFTEQGPDAPFDP 180 Query: 200 -----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 + + GTR+ + D +IF +A L + + A+L + + Sbjct: 181 ANGLRKGKRVPKTRTGTRVRYWTDRQIFLKEARLALETLHQRARQTAFLVPGLTIVVRDE 240 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE--------------- 293 +++A + +E F F GG+ + + +++++ TG+ Sbjct: 241 RDLAGEG--KSQEIFRFDGGISEFCEYLAQDKAVCDVLRLTGQGTFKETVPVLDDRGHMT 298 Query: 294 -KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN 351 + T V+ A+ W + S+ N I T +GGTH +G ++T+ + + + Sbjct: 299 PTEVTRELGVDIALRWGTGYDTAVRSFVNIIATPKGGTHVTGFERSVTKTVNEVLRSAKL 358 Query: 352 KRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLV 409 R DD + +++V + EP+F GQTK L + A R V N + +L Sbjct: 359 LRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVSNVVARELKAFLT 418 Query: 410 QNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGT 464 +A V+E+ R+ + RKTA+ LP KLADC + + Sbjct: 419 STKRDAKAQARAVLEKAVAAARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVERS 478 Query: 465 ELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT 524 ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + Sbjct: 479 ELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGS 538 Query: 525 RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-- 582 + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL RI Sbjct: 539 GRTFDLDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIEL 598 Query: 583 ---TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 +G K VY + + ++ L EF++ G + K I R+KGLGEM A QL ET MD Sbjct: 599 VQPKKGQDKYVYTYSDNELRQTLLEFQRKGVRYKDSIQRYKGLGEMDADQLAETTMDPRH 658 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I L + + LMG + R +FI A+ +D Sbjct: 659 RTLRRINIGD----LDAAEQVFDLLMGNEVAPRKEFITSSAATLD 699 >gi|311113416|ref|YP_003984638.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] gi|310944910|gb|ADP41204.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] Length = 700 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 233/703 (33%), Positives = 339/703 (48%), Gaps = 62/703 (8%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ NY A + +LEGLE VR RPGMYIG TD + L E+IDN++DE +AGY I++ Sbjct: 2 AASNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMQCLWEIIDNSVDEALAGYGQSIQI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V D+GRGIP + P+ S LE++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ILYRDGSVEVQDDGRGIPTDVEPR-TGLSGLEVVFTKLHAGGKFGGGSYTASGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK----------------- 202 SVVNALS L V V R + + F G+P + Sbjct: 121 SVVNALSSRLDVQVDRGSKTYQMSFRHGLPGVFDSGRTPKPEDSFTPADEKHPALQIVGR 180 Query: 203 -----RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 GTR+ + DP+IF A F L+ + ++L ++ ++ I G Sbjct: 181 AKRGVTGTRVRYWADPQIFTPDARFSYEDLVARARQTSFLIPGLRIAIRDERRIPGTPGE 240 Query: 258 --PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHR 299 P +E F GG+ +++ + ++ F+G+ + Sbjct: 241 FGPYEEVFQHDGGISEFVEFLAHDSAVTDIWRFSGRGSFTETVPVLGSDGRSKLTEVDRE 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--- 355 V+ A+ W S+ N I T +GGTH +G L + +K+ K + Sbjct: 301 CEVDIALRWGIGYETTIRSFVNIIATPKGGTHSTGFEQGLLKTFRKHLADNARKFKVGND 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + DD + +L+V + EP+F GQTK L + ++ V + D L Sbjct: 361 KVEKDDALAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDQLKARLNSTARAE 420 Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 E V+ + R+ R +E RKTA+ +P KL DC +ELFIVE Sbjct: 421 KAQATALCEKVVSEMKTRISARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+A+ AR+ + QA+LP+RGKILN A + N + L+Q +G + + Sbjct: 481 GDSALGTARLARSSAYQALLPIRGKILNTQRASVTDMLANAECAALIQVIGAGSGRTFEL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QG 585 E RY KVI+MTDADVDGAHI +LLLT Y+ M LIE ++ PPL R+ + Sbjct: 541 EAARYSKVIMMTDADVDGAHIRTLLLTLMYRYMRPLIEDGRVYAAVPPLHRVEVINRGKP 600 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644 + VY + E ++L + + GKG K I R+KGLGEM A QL ET MD R L R+ Sbjct: 601 NEMVYTYSERQLHELLGQLQAEGKGYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 660 Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 I + + + + LMG + R +FI A + D++ Sbjct: 661 IED----AEAAEQAFSLLMGAEVAPRKEFIIAGAHQLDQDNID 699 >gi|150019136|ref|YP_001311390.1| DNA topoisomerase IV subunit B [Clostridium beijerinckii NCIMB 8052] gi|149905601|gb|ABR36434.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB 8052] Length = 649 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 229/662 (34%), Positives = 347/662 (52%), Gaps = 36/662 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++ YD + + LE LEPVR+RPGMYIG T K LHH E+IDN++DE+ GY N + Sbjct: 4 KNTNAYDVTDLTSLEKLEPVRIRPGMYIGSTGSKGLHHCIWEIIDNSIDEIANGYGNKVT 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L+ + +TV+DNGRGIP HP KS +E++ T LH GGKFDN Y+ SGGLHGVG Sbjct: 64 ITLNEDKSVTVLDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRI 207 +VVNALS+ L V V + I+ Q+F G + L+ K GT+I Sbjct: 123 AAVVNALSEWLEVEVYQNGNIYRQRFEYAFDKELKREMPGTSVGSLKVIGKTDKV-GTKI 181 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 TF+PD +IF F + Q A+ + ++ ++ E +Y Sbjct: 182 TFKPDKEIFST-TDFKFDIIDSRLQELAFQNKGIRLELIDKRKGQEITKE-----YYSEN 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTD 325 GL ++ E+++ I E E+ G + E I + + E SY N I T Sbjct: 236 GLLDFINYLNESKTPIHEEPIIFDGERTVGELQLYGEVCIQFTDSTTEYIASYVNNIPTT 295 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 E GTHE+G + +TR K++++ ++ DDL I+ + I P F GQT Sbjct: 296 EAGTHETGFKTGMTRSFKEWSKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQT 355 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL + +A + + + F ++ N AT ++ +E ++ R + +K E +K Sbjct: 356 KTKLGNNEAYTMMNDLVYTKFSEWIEDNKTLATSIINNALEAAKRRDKIKKINEAEKKKI 415 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 GKGTAPLAGKVAVCTLKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 475 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 E + ++++ A+G T YREEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ Sbjct: 476 KLENVLASEELKIFNTAVGTGTLDNYREEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRY 535 Query: 563 MYDLIEQKHLFLISPPLFRI---TQGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 M LI HL+L PPL+++ T+G YA+ ++ + ++ K I R+K Sbjct: 536 MRPLIANGHLYLAQPPLYKVYRETKGKTIVKYAYSDDELENTKKQVGKGAL----IQRYK 591 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL +T ++ RTLL+V I + ++ LMG + R ++ + Sbjct: 592 GLGEMNPDQLWDTTLNPESRTLLQVTIED----AAKAEKMVSLLMGDIVEPRKNYMYKYG 647 Query: 679 SF 680 F Sbjct: 648 EF 649 >gi|320008123|gb|ADW02973.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC 33331] Length = 708 Score = 539 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 238/709 (33%), Positives = 349/709 (49%), Gaps = 53/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 + A S NY A + +LEGLE VR RPGMYIG TD + L H Sbjct: 1 MTADSVPSTALLTGAGGADRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E+IDN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHA Sbjct: 61 EIIDNSVDEALGGYCDTIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGIEVVMTKLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF +Y SGGLHGVG SVVNALS L V V R + + F RG+P E+ Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHAISFRRGVPGMFTEQGPDS 179 Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 + + GTR+ + D +IF A + L + + A+L + Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTIV 239 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293 ++ + + E F F GG+ + + +++++ + +G Sbjct: 240 VRDERGVDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297 Query: 294 -----KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 + T V+ A+ W S+ N I T +GGTH +G +LT+ + + Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTNLKSFVNIIATPKGGTHVTGFERSLTKTVNEVLR 357 Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + R DD + +++V + EP+F GQTK L + A R V N + Sbjct: 358 SAKLLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVSKELK 417 Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 +L +A V+++ R+ + RKTA+ LP KLADC + Sbjct: 418 AFLTSTKRDAKAQARAVLDKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q + Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + + RY KVI+MTDADVDG+HI +LLLT F + M ++E +F PPL Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597 Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 RI +G K VY + + ++ L E +K+ + K I R+KGLGEM A QL ET M Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLELQRKNVRFKDSIQRYKGLGEMDADQLAETTM 657 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 658 DPRHRTLRRINIGD----LESSEQIFDLLMGNEVAPRKEFITSSAATLD 702 >gi|239928501|ref|ZP_04685454.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672] gi|291436826|ref|ZP_06576216.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672] gi|291339721|gb|EFE66677.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC 14672] Length = 707 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 243/707 (34%), Positives = 354/707 (50%), Gaps = 55/707 (7%) Query: 24 KKSGEIPDSP--AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 +P + A A++ S+ Y A + +LEGLE VR RPGMYIG TD + L H E+ Sbjct: 2 TADTSVPSTALLAGADRDGSN-YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEI 60 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 IDN++DE + GY + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGG Sbjct: 61 IDNSVDEALGGYCDRIEVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGG 119 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------ 189 KF +Y SGGLHGVG SVVNALS L V V R + F RG+P Sbjct: 120 KFGGGSYAASGGLHGVGASVVNALSARLDVEVDRGGHTHAISFRRGVPGAFAAGGPDGKF 179 Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 + K+ +++ GTR+ + D +IF A L + + A+L + Sbjct: 180 EAGNGLRKVKKIPKSRSGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVR 239 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293 + + E E E F F GG+ + + +R + + FTG+ Sbjct: 240 DEYGLGEGGSKGE-ESFRFDGGISEFCEFLATDRPVCDTLRFTGQGTFKETVPVLDEHGQ 298 Query: 294 ---KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 + T V+ A+ W + S+ N I T +GGTH +G A+ + + + Sbjct: 299 MTPTEVTRELGVDVALRWGTGYDATVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAK 358 Query: 350 QNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + R DD + +++V + EP+F GQTK L + A+R V + + Sbjct: 359 KMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVVSRELKAF 418 Query: 408 LVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAH 462 L +A + V+E+ R+ + RKTA+ LP KLADC + Sbjct: 419 LTSTKRDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSTLPAKLADCRSDNVD 478 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 479 RSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGA 538 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 539 GSGRTFDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRI 598 Query: 583 -----TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 +G K VY + + + L EF+ G + K I R+KGLGEM A QL ET MD Sbjct: 599 ELVQPKRGQEKYVYTYSDRELRDKLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDP 658 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + L+ + + LMG R +FI A+ +D Sbjct: 659 RHRTLRRINLTD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 701 >gi|90411890|ref|ZP_01219898.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK] gi|90327148|gb|EAS43520.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK] Length = 627 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 256/648 (39%), Positives = 367/648 (56%), Gaps = 28/648 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TEQSYNAGSIEVLNGLEPVRRRPGMY---TDTVRPNHLGQEVIDNSVDEALAGHARKVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP S +E+IL LHAGGKF N +Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHP-VEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V+V R I+ F G +S LE R +GTR+ F PD + D Sbjct: 118 SVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDA-RYFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F RL + ++KA L ++ ++ E + + GLK YL ++ Sbjct: 177 SAKFSVTRLKSVLKAKAVLCPGLEIVFTNK-------IADETVRWCYEDGLKDYLLEGVK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 +L+ E F G + +WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GYTLLPEEPFVGVF---TSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L + P A +L E I + R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNERPQLAEQLAETCIANAHRRMR--ASKKVVRKKIASGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CSQ + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q++ D Sbjct: 405 CSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S LRY K+ ++ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFETLVRAGHVYIA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI + YA DE+ K IL+ +GK+ + RFKGLGEM QL+ET MD Sbjct: 524 MPPLYRIDLAKEVYYALDEDEKNGILDRLSTK-RGKVNVQRFKGLGEMNPLQLRETTMDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ I+ D T + ++ L+G K A++R ++Q++ + Sbjct: 583 NTRRLVQLTIDDDTK----TNEMMDMLLGKKRAEDRRFWLQDKGDMAE 626 >gi|270157507|ref|ZP_06186164.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968] gi|289164107|ref|YP_003454245.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150] gi|269989532|gb|EEZ95786.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968] gi|288857280|emb|CBJ11107.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150] Length = 627 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 361/646 (55%), Gaps = 25/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NY A +I +L GLEPV+ RPGMY TD +HL EVIDN++DEV+AG+A+ I V+ Sbjct: 2 SENYTAQAIEVLSGLEPVQRRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFASHIRVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP+ S +E+I+T LHAGGKF + Y SGGLHGVG+S Sbjct: 59 LHEDGSIEVEDDGRGMPVDLHPQL-GLSGVEVIMTRLHAGGKFSDKNYSFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDK 219 VVNALS+ L VT+ R I+ F+ G L L + + + GT I F P+ K F Sbjct: 118 VVNALSERLDVTIKRNGLIYQMSFANGDKLCELNEAGLTKKRDTGTTIRFWPNSKYFDTT 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 L+ + ++KA L + + E + + GL YL L + Sbjct: 178 R-ISIKHLMHVLRAKAVLCTGLSMTFINKVNNEE-------MHWCYEKGLIDYLNQSLPD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWA--IAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 + E F G+ + TV+WA + SY N I T +GGTH +GLR Sbjct: 230 GDYLPEEPFIGEFKSD---EATVDWALVWSNTANTGFSESYVNLIPTVQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L + ++ EL R + + +DDL +LSV ++EP+FAGQTK +L S V Sbjct: 287 LFDAMAEFCELRNLLPRGVKLTADDLWEPCQYVLSVKMKEPQFAGQTKERLSSRQISAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N ++D F +L Q+ + + IER+++RL+ + ++V RK + LPGKLADC Sbjct: 347 SNVVKDAFALWLNQHRNQGEAIAALTIERAQKRLK--QAKQVARKRVSQGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 Q ELF+VEGDSAGGSAKQARN+ QA+LPLRGKILN S ++ +Q+I D+ Sbjct: 405 LQTDLSQAELFLVEGDSAGGSAKQARNKDFQAILPLRGKILNTWEVDSSQVLASQEIHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DGAHIA+L+ F + L++ H+F+ Sbjct: 465 SVAIGVDPGSDDL-SGLRYGKLCILADADSDGAHIATLICALFLRHFKPLVQAGHVFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA D+E K +IL + + K + RFKGLGEM QL+ET MD N Sbjct: 524 PPLYRIDAGKEVYYALDDEEKNRILNHLTQTTRAKANVQRFKGLGEMNPIQLRETTMDPN 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ + ++ +NK +A +R +++ + + + Sbjct: 584 TRRLVQLTLGDQGDAEAIMDMMLNK---KRASDRKVWLETKGNLAE 626 >gi|307255152|ref|ZP_07536970.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259589|ref|ZP_07541314.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862025|gb|EFM94001.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866525|gb|EFM98388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 637 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 251/650 (38%), Positives = 371/650 (57%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA+ I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYASQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+I+T LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HTDNSLEVIDNGRGMPVDIHS-TEKISGVELIMTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + + + R I++ F G+ + L + + GT + F P+PK F Sbjct: 120 VNALSQRVEIKIKRNGEIYTIAFENGVKVEELTVIGSCPKKQTGTTVRFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A+RL + ++KA L ++ + + E +Y+ GL YL L+ Sbjct: 180 -FSASRLRHLLRAKAVLCPKLTLNFVD-------HINNSSETWYYEDGLSDYLSETLKEF 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ECLPNPPFIGDVTSETE---AVTWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ +++ + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMVEFCEIHNLLPKSVKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQTGKLIAEMAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKDYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S E+LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 VALGIDPDSDSL-EELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEAEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINK---DLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ +++ + +T + ++ L+ K A++R ++++ R + Sbjct: 585 TRRLVQLTLDELDVAEENEPNTFEIMDMLLAKKRAEDRKQWLRNRGDEAE 634 >gi|78707335|gb|ABB46474.1| DNA gyrase subunit B [Acholeplasma axanthum] gi|78707337|gb|ABB46475.1| DNA gyrase subunit B [Acholeplasma axanthum] gi|78707339|gb|ABB46476.1| DNA gyrase subunit B [Acholeplasma axanthum] Length = 589 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 241/607 (39%), Positives = 340/607 (56%), Gaps = 22/607 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T LHHL E++DN++DE +AGYA+ I + L + V DNGRGIP Sbjct: 1 VRKRPGMYIGTTGADGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HP + +E ILTTLHAGGKFD+ +Y++SGGLHGVG SVVNALS+ V V R N Sbjct: 61 VDIHP-HTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + Q ++RGIP L +K + GT F+ DP IF + +D RL + Q A+L Sbjct: 120 KNYYQMYNRGIPAGDLIEKG-LSEHTGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + +K + A +++ GGL Y + NR ++ +F + Sbjct: 179 NRGIKITIKDLRTEAVVENT-----YHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDI 233 Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 VE + + + I S+ N I T EGG HE G ++ALTR + YA+ + + Sbjct: 234 ---NVEITMQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTE 290 Query: 357 --IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I +D + ILSV +P+F GQTKTKL + + ++ V L + D +L++NP + Sbjct: 291 DGFIGEDTREGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQD 350 Query: 415 ATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A +++ VI + R+ + RK + L KLADC A EL+IVEGDS Sbjct: 351 AKAIIDKVILAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDS 410 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAKQ R QA+LPLRGK+LNV A +KI +N +I+ L QA+G + Sbjct: 411 AGGSAKQGRESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDELDPSKA 470 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RY K++IMTDADVDGAHI +LLLTFFY+ + LI+ +++ PPL++++ G + Y +D Sbjct: 471 RYHKIVIMTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYD 530 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 +E L E G+ ++ R+KGLGEM QL ET MD RTLLRV + + Sbjct: 531 DE----ALPEIAATFDGRYQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAM---- 582 Query: 654 DTQDSIN 660 D + Sbjct: 583 DADQVFS 589 >gi|78707333|gb|ABB46473.1| DNA gyrase subunit B [Acholeplasma axanthum] Length = 589 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 240/607 (39%), Positives = 340/607 (56%), Gaps = 22/607 (3%) Query: 58 VRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIP 117 VR RPGMYIG T LHHL E++DN++DE +AGYA+ I + L + V DNGRGIP Sbjct: 1 VRKRPGMYIGTTGTDGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGIP 60 Query: 118 VENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQN 177 V+ HP + +E ILTTLHAGGKFD+ +Y++SGGLHGVG SVVNALS+ V V R N Sbjct: 61 VDIHP-HTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119 Query: 178 TIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYL 237 + Q ++RGIP L +K + GT F+ DP IF + +D RL + Q A+L Sbjct: 120 KNYYQMYNRGIPAGDLIEKG-LSEHTGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178 Query: 238 SGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT 297 + +K + A +++ GGL Y + NR ++ +F + Sbjct: 179 NRGIKITIKDLRTEAVVENT-----YHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDI 233 Query: 298 HRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS 356 VE + + + I S+ N I T EGG HE G ++ALTR + YA+ + + Sbjct: 234 ---NVEITMQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTE 290 Query: 357 --IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 I +D + ILSV +P+F GQTKTKL + + ++ V L + D +L++NP + Sbjct: 291 DGFIGEDTREGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQD 350 Query: 415 ATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 A +++ V + + R+ + RK + L KLADC A EL+IVEGDS Sbjct: 351 AKAIIDKVVLAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDS 410 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 AGGSAKQ R QA+LPLRGK+LNV A +KI +N +I+ L QA+G + Sbjct: 411 AGGSAKQGRESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDELDPSKA 470 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RY K++IMTDADVDGAHI +LLLTFFY+ + LI+ +++ PPL++++ G + Y +D Sbjct: 471 RYHKIVIMTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYD 530 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 +E L E G+ ++ R+KGLGEM QL ET MD RTLLRV + + Sbjct: 531 DE----ALPEIAATFDGRYQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAM---- 582 Query: 654 DTQDSIN 660 D + Sbjct: 583 DADQVFS 589 >gi|282862334|ref|ZP_06271396.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE] gi|282562673|gb|EFB68213.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE] Length = 708 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 244/709 (34%), Positives = 351/709 (49%), Gaps = 53/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 + A S NY A + +LEGLE VR RPGMYIG TD + L H Sbjct: 1 MTADSVPSTALLTGAGGADRESSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E+IDN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHA Sbjct: 61 EIIDNSVDEALGGYCDAIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF +Y SGGLHGVG SVVNALS L V V R +T S F RG+P E+ Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSTTHSISFRRGVPGMFTEQGPDS 179 Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 + + GTR+ + D +IF A D L + + A+L + Sbjct: 180 PFDPANGLRKGKRIPKTRTGTRVRYWADRQIFLKDAKLDLETLYQRARQTAFLVPGLTIV 239 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293 ++ I + E F F GG+ + + +++++ + TG Sbjct: 240 VRDERGINGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLTGTGTFKETVPVLDDR 297 Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 + T V+ A+ W S+ N I T +GGTH SG +LT+ + + Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVSGFERSLTKTVNEALR 357 Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 T+ R DD + +++V + EP+F GQTK L + A R V N + Sbjct: 358 STKLLRVAEDDVVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELK 417 Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 +L +A V+++ R+ + RKTA+ LP KLADC + Sbjct: 418 AFLTSTKRDAKAQARAVLDKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q + Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + + RY KVI+MTDADVDG+HI +LLLT F + M ++E +F PPL Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597 Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 RI +G K +Y + + ++ L E +K+ + K I R+KGLGEM A QL ET M Sbjct: 598 RIELVQPKKGQDKYIYTYSDNELRQTLLELQRKNVRVKDSIQRYKGLGEMDADQLAETTM 657 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702 >gi|54307668|ref|YP_128688.1| DNA topoisomerase IV subunit B [Photobacterium profundum SS9] gi|46912091|emb|CAG18886.1| putative topoisomerase IV, subunit B [Photobacterium profundum SS9] Length = 627 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 254/647 (39%), Positives = 364/647 (56%), Gaps = 26/647 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A SI +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TEQSYNAGSIEVLNGLEPVRRRPGMY---TDTARPNHLGQEVIDNSVDEALAGHARKVEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP S +E+IL LHAGGKF N +Y+ SGGLHGVGI Sbjct: 59 ILYADQSLEVIDDGRGMPVDIHP-VEGVSGVELILCKLHAGGKFSNDSYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + V+V R I+ F G +S LE R +GTR+ F PD + D Sbjct: 118 SVVNALSKRVEVSVKRDGQIYQIAFEHGDKVSELEVIGTCGRRAKGTRVHFWPDA-RYFD 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A F RL + ++KA L ++ ++ E + + GLK YL ++ Sbjct: 177 NAKFSVTRLKSVLKAKAVLCPGLEIVFTDK-------IADETIRWCYEDGLKDYLLEGVK 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 +L+ E F G + +WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GYTLLPEEPFIGVF---TSQIEAADWALLWLPEGGELITESYVNLIPTAQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMREFCEFRNLLPRGVKLTADDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L + P A +L E I + R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNERPQLAEQLAEVCIANAHRRMR--ASKKVVRKKIASGPTLPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CSQ + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN ++++ +Q++ + Sbjct: 405 CSQQDLNRTELFLVEGDSAGGSAKQARDRMFQAIMPLRGKILNTWEVSADQVLASQEVHN 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S LRY K+ ++ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISIALGIDPDSDDL-SGLRYGKICVLADADSDGLHIATLLCALFMKHFEALVRAGHVYIA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI + YA DE K IL+ +GK+ + RFKGLGEM QL+ET MD Sbjct: 524 MPPLYRIDLAKEVYYALDEAEKNGILDRLSTK-RGKVNVQRFKGLGEMNPLQLRETTMDP 582 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 N R L+++ I+ D + + +NK +A++R ++Q++ D Sbjct: 583 NTRRLVQLTIDDDEKTNEMMDMLLNK---KRAEDRRFWLQDKGDMAD 626 >gi|294155351|ref|YP_003559735.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145] gi|291600024|gb|ADE19520.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145] Length = 640 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 233/650 (35%), Positives = 342/650 (52%), Gaps = 31/650 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y A +I L+GLE VR RPGMYIG TD LHHL E++DN++DE +AGYAN I Sbjct: 3 ADNNTYTAKNITQLKGLEAVRKRPGMYIGSTDVNGLHHLVWEIVDNSIDESLAGYANKII 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L +G + + DNGRGIPV +S +E++ T LHAGGKF+ Y+ SGGLHGVG Sbjct: 63 LTLKEDGSVIIEDNGRGIPVGKVDAT--RSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS +L VTV R + +F + + K R GT + F PD F Sbjct: 121 SSVVNALSTKLMVTVYRDGFEYLTEFKQDKIIQKTHKVGPTRKV-GTIVQFWPDYD-FFK 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +A + + + + ++L ++ +K +E E F G+ +L + Sbjct: 179 QAKLNYEVISERLKESSFLISGLEIKIIDEKTKSE-------EIFKHVDGIAAFLGFLND 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 +++ I+ I +K+ ++ ++ N I S+ N + T +GGTHE+GL+ AL Sbjct: 232 SKNAITQPITFSDVKKEIEVDFGFQYTDSY---NELIVSFVNNVKTRDGGTHETGLKTAL 288 Query: 339 TRGIKKYAELTQNKRAIS-IISDDLMISAVGILSVFIR--EPEFAGQTKTKLVSLDAQRT 395 T+ + + + D+ ILS+ + EF GQTK KL + +A+ Sbjct: 289 TKVFNDFGTDEGVLKNRNVFDPSDIREGLTVILSLKVPEKHLEFVGQTKDKLGTPEAKNI 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE + ++ +N A K+LE + E R +KQR+ RKT K L K Sbjct: 349 VEELVTKHLKLWIAENKQLAKKVLEKIKRAYEIRNEEKKQRQELRKTKSILKDKPILSDK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK R+R QA+LPLRGK++NV + I N + Sbjct: 409 LTPAQSKKPEEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINVEKSKLIDILKNTE 468 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ++G ++ +Y K+IIMTDAD DGAHI LLLTF Y+ M LIE + Sbjct: 469 IGTIINSIGAGYGKEFDLTKAQYGKIIIMTDADTDGAHIQILLLTFLYRYMKPLIEDGRV 528 Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 F+ PPL++ +K S YA DE + I+ + G EI R+KGLGEM A QL E Sbjct: 529 FIALPPLYKALNKSKNVSKYAWDELELKAIISKA-----GSWEIQRYKGLGEMNADQLWE 583 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ R++++V I+ S + ++ LMG A R +I F Sbjct: 584 TTMNPETRSIVKVTIDDITLS----ERRVSTLMGNNASLRKNWIDRHVDF 629 >gi|223041848|ref|ZP_03612036.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202] gi|223017341|gb|EEF15764.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202] Length = 636 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 251/649 (38%), Positives = 371/649 (57%), Gaps = 27/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++GYA I+V L Sbjct: 4 KRYGADEITVLKDLEPVQLRPGMY---TDTTRPNHLGQEVIDNSVDEALSGYATQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HKDNSLEVIDNGRGMPVDIHS-TEKMSGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+ + +T+ R I++ F+ G+ + L + + GT + F P+PK F Sbjct: 120 VNALSERVEITIKRNGEIYTIAFANGVKVEDLTVVGSCPKRQTGTTVRFYPNPKYFDSP- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ ++ +E +Y+ GL YL L+ Sbjct: 179 KFSVSRLRHLLKAKAVLCPKLTINFTDK-------INDTQESWYYEDGLSDYLSEALKEY 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 EYLPNPPFIGDVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + + ++ E+ + I + +DD+ +LS+ I+EP+FAGQTK +L S A V+ Sbjct: 289 LKAMTEFCEIHNLLPKGIKLTADDVWNRCAYVLSLKIQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + ++D F +L QN L E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 STIKDAFSLWLNQNVQIGKTLAELAISSAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 SQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + ++LRY KV I+ DAD DG HIA+LL F + +L++ H+++ P Sbjct: 467 IAMGIDPDNDNL-DELRYGKVCILADADSDGLHIATLLCALFLRHFPNLVKNGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE+ K+ IL K KGK + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEDEKEAILARLAKK-KGKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEI--NKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++ T + ++ L+ K +++R +++Q R + + Sbjct: 585 TRRLVQLTFEEREEDEQESHTFELMDMLLAKKRSEDRKQWLQNRGNEAE 633 >gi|53805052|ref|YP_113319.1| DNA topoisomerase IV subunit B [Methylococcus capsulatus str. Bath] gi|53758813|gb|AAU93104.1| DNA topoisomerase IV, B subunit [Methylococcus capsulatus str. Bath] Length = 628 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 259/647 (40%), Positives = 371/647 (57%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YDAS+I +L GL+PVR RPGMY TD HL EVIDNA+DE +AG+A LIE+ L Sbjct: 3 EVYDASAIEVLSGLDPVRRRPGMY---TDTTRPDHLAQEVIDNAVDEALAGFARLIEIRL 59 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF Y SGGLHGVG+SV Sbjct: 60 LADGGLEVRDDGRGMPVDIHPEL-GVSGVEVILTRLHAGGKFSRKAYRYSGGLHGVGVSV 118 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 VNALS L V V R + + F +G + L + + GT + F P+ F + Sbjct: 119 VNALSLRLEVEVRRDGKVHAIAFEKGEKVGDLTETGTTPRRATGTTVRFWPEAHYFDNAR 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + D E E + + GL YL +L+ Sbjct: 179 -FSRSRLKHLLRAKAVLCPGLEIRMTDD-------ASGETETWCYRNGLPQYLLDQLQGC 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN--PEITSYCNTILTDEGGTHESGLRVAL 338 + I E FTG E + VEWA+ WC E P SY N + T +GGTH +GLR L Sbjct: 231 ACIPDEPFTGAMEG---RQEAVEWAVLWCPEGAAPVAESYVNLVPTVQGGTHVNGLRTGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ E R I I+ DD+ +LSV ++EP+FAGQTK +L S + V Sbjct: 288 TEAVREFCEYRNLLPRGIKIVPDDVWERCNHVLSVKMQEPQFAGQTKERLNSRECASFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L Q+P ++ E VIE +++RLR R V RK LPGKLADC+ Sbjct: 348 GVVKDAFSLWLNQHPAVGERIAELVIESAQKRLR--AARRVTRKKVSSGPALPGKLADCA 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR++ QA++PLRGKILN S I +Q++ D+ Sbjct: 406 AQDVNRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVESGAILASQEVHDIS 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + LRY K+ ++ DAD DG HIA+LL F + L++ H+F+ P Sbjct: 466 LAIGVDPGATDL-SGLRYGKICVLADADSDGNHIATLLCALFLRHFRALVKAGHVFIAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ +L+ + KGK+ + RFKGLGEM QL+ET M+ + Sbjct: 525 PLYRIDVGKQVYYALDEAEKKGVLDRIEAEKIKGKVNVLRFKGLGEMNPVQLRETTMNPD 584 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682 R L+++ ++ T + ++ L+ +A +R +++E+ + D Sbjct: 585 TRRLVQLSLDD----AAATDERLDMLLAKRRAGDRRVWLEEKGNLAD 627 >gi|254448183|ref|ZP_05061646.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015] gi|198262309|gb|EDY86591.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015] Length = 629 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 362/646 (56%), Gaps = 28/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y AS I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV L Sbjct: 3 DYKASDIEVLSGLDPVKKRPGMY---TDTTRPNHLAQEVIDNSVDEAMAGHAKKIEVVLY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVGISVV Sbjct: 60 KDGSLEVSDDGRGMPVDIHPEQ-GVPGVELILTRLHAGGKFSNKNYAFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NAL+ L V + R + FS G S L + V + GT + F DP+ F Sbjct: 119 NALTSRLDVHIKRDGKLHHIAFSAGEKTSDLTVVDSVGQRNTGTTVRFWADPQYFDSD-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + RL + ++KA L + + +K + + + GL YL L+ Sbjct: 178 YSLPRLRHLLRAKAVLCPGLMVRFKDEKSGDKNE-------WCYKDGLNDYLLEALQGWE 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 L+ ++FTG + + V+WA+ W E E SY N I T +GGTH +GLR LT Sbjct: 231 LLPPDLFTGHLSSE---KEAVDWALTWLPEGGEPVQESYVNLIPTPQGGTHVNGLRTGLT 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I+++ E R + I +D+ ++S+ +++P+FAGQTK +L S ++ V Sbjct: 288 EAIREFCEFRNLLPRGVKITPEDVWDKISYVISLKMQDPQFAGQTKERLSSRESAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F YL QN L + I ++ RLR ++V RK LPGKLADC+ Sbjct: 348 VVKDAFSLYLNQNADTGEALAQMAITSAQRRLR--SAKKVVRKKVTSGPALPGKLADCTS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + TELF+VEGDSAGGSAKQAR+R QA++PLRGKILN +++ +Q++ D+ Sbjct: 406 SDPAMTELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEPDQVLASQEVHDISI 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S LRY KV I+ DAD DGAHIA+LL F + L+E H++L PP Sbjct: 466 ALGIEPGSTDL-GKLRYGKVCILADADSDGAHIATLLCALFLRHFPALVEGGHVYLAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE ++ IL+ + + KGK+ +RFKGLGEM +QL+ET++ + Sbjct: 525 LYRIDVGKQVYYAVDEPERRGILDRIEAEKKKGKVTTTRFKGLGEMNPAQLRETSIHPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+R+ + + + L+ K + +R ++++ + D Sbjct: 585 RRLVRLTVE----ASDSAHSVFDMLLAKKRSGDRKQWLESKGDLAD 626 >gi|329940010|ref|ZP_08289292.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus M045] gi|329300836|gb|EGG44732.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus M045] Length = 707 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 239/706 (33%), Positives = 347/706 (49%), Gaps = 52/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLTGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + G+ + IEV L +G + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDESLGGHCDHIEVVLHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------- 192 F +Y SGGLHGVG SVVNALS L V V R + F RG+P + Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRNGHTHAVSFRRGVPGAFTGAGPDAKFE 180 Query: 193 -----LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 + K+ +++ GTR+ + D +IF A L + + A+L + Sbjct: 181 AGGGLRKTKKIPKSRVGTRVRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTIVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + E E E F F GG+ + + +R + FTG+ Sbjct: 241 EYGLGEGGSKGE-ESFRFDGGISEFCEYLATDRPVCDVLRFTGQGTFKETVPVLGEDGQM 299 Query: 294 --KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 V+ A+ W + S+ N I T +GGTH +G A+ R + + Sbjct: 300 TPTDVVRELGVDVALRWGTGYDSAVRSFVNIIATPKGGTHVAGFEQAVARTFNEVLRAKK 359 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 360 LLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVANVVSKELKAFL 419 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 420 TSTKRDAAAQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVGR 479 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 540 SGRTFDIDTARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599 Query: 583 ----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + + ++LE K+ + K I R+KGLGEM A QL ET MD Sbjct: 600 LVQPKKGQDKYVYTYSDRELRDRLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + L+ + + LMG R +FI A+ +D Sbjct: 660 HRTLRRINLTD----LEAAETVFDLLMGNDVAPRKEFISSSAATLD 701 >gi|152999325|ref|YP_001365006.1| DNA topoisomerase IV subunit B [Shewanella baltica OS185] gi|151363943|gb|ABS06943.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS185] Length = 628 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 251/647 (38%), Positives = 360/647 (55%), Gaps = 28/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ H + +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHLE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VTV R ++ F G + L R GTR+ F PD F Sbjct: 118 VVNALSRRVEVTVRRDGQVYDIAFENGFKVEELRPTGTCGRRNTGTRVHFWPDASYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ E E+++ GL YL+ + + Sbjct: 178 N-FSNSKLIYLLRAKAVLCPGLRIKFTNK-------QTNEVHEWFYESGLTDYLKAAIGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + E F G + +WAI W E E SY N I T GGTH +G R Sbjct: 230 NLRLPDEPFVGCFKG---QLEAADWAITWLPEGGESIGESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ A ILSV ++EP+FAGQTK KL S V Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDRAAFILSVKMQEPQFAGQTKEKLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F +L N A L E I ++ RL+ K +V RK LPGKL DC Sbjct: 347 SGVVRDAFSLWLNSNTELAESLAEMCINNAQSRLKAAK--KVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 465 SVAIGCDPDSSDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRILVEQGHVYIAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE + IL+ ++ KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDIGKEVYYALDEAERAGILDRIAAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 N R L+++ I+ +++T ++ L+ K + +R +++++ Sbjct: 584 NTRRLVQLTIDD----IEETDALMDMLLAKKRSPDRKNWLEDKGDMA 626 >gi|221133993|ref|ZP_03560298.1| DNA topoisomerase IV subunit B [Glaciecola sp. HTCC2999] Length = 630 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 243/644 (37%), Positives = 354/644 (54%), Gaps = 21/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y++ +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 SEQYNSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLSQEVIDNSVDEALAGHASSIKVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+I+T LHAGGKF N YE SGGLHGVGIS Sbjct: 59 LHDDQSLEVIDDGRGMPVDIHPE-EKISGVELIMTKLHAGGKFSNKNYEFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + VT+ R + F+ G +S L + + GT + F PD F Sbjct: 118 VVNALSKRVEVTIRRDAQVHQIVFANGDKISELAVIDTCGKRNTGTSVHFWPDASYFDSG 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +LL + ++KA L ++ + + E E+Y+ GL+ YL ++ Sbjct: 178 N-FSVRQLLHVLRAKAVLCPGLRIRF-------DNKISKETTEWYYEDGLRDYLYDSVKE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + ++ + SY N I T +GGTH +GLR L Sbjct: 230 FETLPTDEPFVGAYSGNHEAADWAVMWLPEGGDMVTESYVNLIPTAQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + DD+ ILS +++P+FAGQTK +L S A V Sbjct: 290 ESMREFCEFRNLLPRGVKLSPDDIWDRCSYILSTKMQDPQFAGQTKERLSSRQAAAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L Q+ A L E I +++RLR+ ++V RK + LPGKL DCS Sbjct: 350 IVKDAFSLWLNQHTDIAELLAEMCINNAQKRLRQT--KKVARKKVTQGPALPGKLTDCSS 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q+I D+ Sbjct: 408 QDNSRSELFLVEGDSAGGSAKQARDREIQAIMPLRGKILNSWEVDSSQVLASQEIHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S+ LRY K+ I+ DAD DG HIA+LL F + L+EQ H+++ PP Sbjct: 468 ALGIDPDSEDL-SGLRYGKICILADADSDGLHIATLLCALFVKHFRTLVEQGHVYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA DE KQ IL+ + K GK+ + RFKGLGEM QL+ET MD N Sbjct: 527 LFRIDIGKEVYYALDESEKQGILDRIEAENKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 586 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ + L+ L ++ +R +++ + + Sbjct: 587 RRLVQLTVGDAEQMLELMDML---LAKKRSGDRKVWLESKGNLA 627 >gi|262277071|ref|ZP_06054864.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114] gi|262224174|gb|EEY74633.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114] Length = 646 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 294/643 (45%), Positives = 415/643 (64%), Gaps = 7/643 (1%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + S Y A I +LEGL PVR RPGMYIGGTDE A HHL +E++DN++DE +AGYA I Sbjct: 2 AISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEILDNSIDEAVAGYAKEIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L + + D+GRGIP++ HPK K+ LE+++TTLH+GGKF++S Y+ S GLHGVG Sbjct: 62 IKLVNKNTIIISDDGRGIPIDKHPK-KKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L++ V + + I+SQ +S+G L+ L+ K K + K GT+ITF PDP+IFG Sbjct: 121 LSVVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKNGTQITFSPDPEIFGK 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI-AEKYGIPEKEEFYFPGGLKTYLQTKL 277 F ++ ++ ++KAYL +K W C+K++ K +P KE F GL+ +L+ ++ Sbjct: 181 DVNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEI 240 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRV 336 +++ ++ + +G +E+A+ + E+ ++CNT+ GGTH++G R Sbjct: 241 NQNNVLHEKVSFQSGNLED-KKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRS 299 Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + + I+KYA+ NK DD+ A I+SV+I PEF GQTK KL S Q+ Sbjct: 300 GIAKSIRKYAKNKNNKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYC 359 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++ FD +L +N A +L + E+ E+ + V R++A RK+RLPGKL+DC Sbjct: 360 DSFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDLNQNVERQSAFRKIRLPGKLSDC 419 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + GTELFIVEGDSAGGSAKQAR+R+ QA+LPLRGKILNV S+ + KI N +I +L Sbjct: 420 TSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINNL 479 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +QALGC Y ++DLRYEK+IIMTDADVDG HI++LLLTFF EM LI HL+L Sbjct: 480 LQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLAV 539 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+++ KS YA DE K K K + K KIEISRFKGLGEM+ +QLKET M+ Sbjct: 540 PPLYKLNISGKSTYAIDESEKNK---LLKDNKKAKIEISRFKGLGEMMPAQLKETTMNIE 596 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 R L++V + +K T ++ LMG A+ R KFI E A+ Sbjct: 597 TRKLIKVVLPVQKPKMKKTNKLVSDLMGKNAELRLKFISENAN 639 >gi|114320108|ref|YP_741791.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1] gi|114226502|gb|ABI56301.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 630 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 371/648 (57%), Gaps = 28/648 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ YDA+ I +L GLEPVR RPGMY TD +HL EVIDN++DEV+AG+A ++V+ Sbjct: 2 SNRYDAADIEVLTGLEPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEVMAGHATRVDVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G L V D+GRG+PV+ HP + +E+IL TLHAGGKF Y+ SGGLHGVG+S Sbjct: 59 LFRDGSLEVRDDGRGMPVDVHP-GQGRPGVEVILGTLHAGGKFSGKNYQYSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V V R + F+ G S L + KV + GT + F PD K F Sbjct: 118 VVNALSRRLEVRVRRGGIEYMMSFAHGEKTSELTEVGKVAKKDTGTLLRFWPDTKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F R+ + ++KA L + + + E + + GLK YL L+ Sbjct: 178 -KFSIPRMRHVLRAKAVLCPGLVVRFYDEAAEEETV-------WCYEDGLKDYLSGALQE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + +E F G+ EWA+ W E E SY N I T +GGTH +GLR Sbjct: 230 WQTLPTEPFIGRMSSD---HEAAEWAVTWLPEGGEAITESYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LT I+++ E R + I +D+ +LSV + +P+F+GQTK +L S + V Sbjct: 287 LTEAIREFCEFRNLLPRGVRITPEDVWERVSYVLSVKLEDPQFSGQTKERLSSRECATFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ +A +++ +I ++ R+R R+V RK + LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQHVEDAEAIVQLIISAAQRRMR--ASRKVARKRVTQGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN +++ +Q++ D+ Sbjct: 405 AAQDPARTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVAPDEVMASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S+ + + LRY K+ I+ DAD DGAHIA+LL F + L+ H+F+ Sbjct: 465 AVALGTDPGSE-QLDGLRYGKICILADADPDGAHIATLLCALFLKHFPALVRAGHVFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G ++ YA DE +Q +L+ KGK+ ++RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKQTFYALDEHERQGVLDRIAAEKLKGKVAVTRFKGLGEMNPLQLRETTMAP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682 + R L+++ ++ + T+ + +L+G A +R ++++++ + + Sbjct: 584 DTRRLVQLMVDD----AEATEALMAQLLGKRNASQRRRWLEDKGNMAE 627 >gi|154508954|ref|ZP_02044596.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC 17982] gi|153798588|gb|EDN81008.1| hypothetical protein ACTODO_01470 [Actinomyces odontolyticus ATCC 17982] Length = 706 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 232/702 (33%), Positives = 343/702 (48%), Gaps = 63/702 (8%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y+A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE + G+ + Sbjct: 6 TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDT 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + +V DNGRGIPV+ P + +E++ T LHAGGKF +Y SGGLHG Sbjct: 66 IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196 VG SVVNALS L V V R F RG P + Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTV 184 Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 KV+ + GTR+ F D +IF GF LL + A+L + ++ E Sbjct: 185 GKVKKSQTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEE-- 242 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---------------- 299 E F F GG+ + + + + TG+ T + Sbjct: 243 ---LHESFRFDGGVVDFANWLATDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVER 299 Query: 300 -GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352 V+ A+ W + S+ N I T +GGTH +G A+ + ++ + K Sbjct: 300 TCEVDIALRWGIGYDTSVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGA 359 Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 + DD+ +++V EP+F GQTK L + + V + D + Sbjct: 360 KDGRPEKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSK 419 Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467 + + +E V+ + R+ R +E++R K A+ LP KLADC TELF Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELF 479 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSA G+AK ARN QA+ P+RGKILNV A + + N + +++Q +G + Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582 + RY KVI+MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599 Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + + +Y + E+ + L ++ G+ K I R+KGLGEM A QL ET MD R+L Sbjct: 600 GRKKREYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ + + +L+ +D LMG+ R +FI E ++ +D Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRKEFIVEESAGLD 700 >gi|182418445|ref|ZP_02949739.1| DNA gyrase subunit B [Clostridium butyricum 5521] gi|237666793|ref|ZP_04526778.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377827|gb|EDT75371.1| DNA gyrase subunit B [Clostridium butyricum 5521] gi|237657992|gb|EEP55547.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262] Length = 649 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 232/659 (35%), Positives = 350/659 (53%), Gaps = 36/659 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YD + + LE LEPVR+RPGMYIG T K LHH E+IDN++DE+ GY N + ++L Sbjct: 7 NTYDVTDLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEIIDNSIDEIANGYGNKVTITL 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +T++DNGRGIP HP KS +E++ T LH GGKFDN Y+ SGGLHGVG +V Sbjct: 67 NEDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVYTELHTGGKFDNKNYKTSGGLHGVGAAV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210 VNALS + V V + I+ Q+F G P++ LE K +K GT+ITFR Sbjct: 126 VNALSKWVEVEVYQNGKIYRQRFEYAFDKELKRNMPGTPVTALEVIGKT-DKTGTKITFR 184 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD +IF F + Q A+ + ++ ++ E +Y GL Sbjct: 185 PDEEIFSTI-DFKFDIIDSRLQELAFQNKGIRLELVDTRKGQEASKE-----YYSENGLL 238 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328 +++ E+++ + E+ + E I + + E SY N I T E G Sbjct: 239 DFIKYLNESKTPLHEIPIIFDGERTVSNIQMYGEICIQFTDSTTEYIASYVNNIPTTEAG 298 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE+G + +TR K++A+ ++ DDL I+ + I P F GQTKTK Sbjct: 299 THETGFKTGMTRAFKEWAKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKTK 358 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + +A + + + F ++ N AT ++ +E ++ R + +K + RK + Sbjct: 359 LGNSEAYTMMNDLVYTKFSEWIEDNKELATFVINNALEAAKRRDKIKKINDAERKKIGKG 418 Query: 447 L-RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E Sbjct: 419 TAPLAGKVAVCTMKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLE 478 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++++ A+G T Y+EEDL+Y+K+IIM+DADVDG HI +L +T+ Y+ M Sbjct: 479 NVLASEELKIFNTAVGTGTLDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRP 538 Query: 566 LIEQKHLFLISPPLFRI---TQGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 LI HL+L PPL+++ T+G YA+ ++ K+ +E K I R+KGLG Sbjct: 539 LIANGHLYLAQPPLYKVYRETKGKSIVKYAYSDDDLDKVKKEVGKGAL----IQRYKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM QL ET ++ RTLLRV I + ++ LMG + R ++ + F Sbjct: 595 EMNPDQLWETTLNPESRTLLRVNIED----AAKAEKMVSLLMGDVVEPRKNYMYKYGEF 649 >gi|311695418|gb|ADP98291.1| DNA topoisomerase IV, subunit B [marine bacterium HP15] Length = 631 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 259/649 (39%), Positives = 369/649 (56%), Gaps = 28/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 SQQQYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G L+V D+GRG+PV+ H K +E+ILT LHAGGKF Y SGGLHGVG+ Sbjct: 59 VLYSDGSLSVEDDGRGMPVDLH-KEEGLPGVELILTRLHAGGKFSQGNYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L VT+ R + F+ G S LE + V + GTR+ F+PD F Sbjct: 118 SVVNALSTHLEVTIKRDGQLHRMTFANGDKASELEVIDTVGKRNTGTRLKFKPDITYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL ++KA L + + +K EK+E+++ GL+ YL+T L Sbjct: 178 PN-FSVSRLRHNLRAKAVLCPGLTVTFLQEK-------TGEKDEWFYEDGLRDYLRTALA 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + ++ E FTG + V+WAI W E E + SY N I T +GGTH +GLR Sbjct: 230 DIEVVPLEPFTGSFSGN---KEAVDWAIQWLPEGGEAIMESYVNLIPTAQGGTHVNGLRT 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +D+ A +LS ++EP+F+GQTK +L S +A Sbjct: 287 GLLEAMREFCEFRNLLPRGVKLSPEDIWERAAYVLSFKMQEPQFSGQTKERLSSREAAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F +L Q+ A L E I ++ RLR ++V RK LPGKLAD Sbjct: 347 ISGVVKDAFSLWLNQHTDVAEALAELFISNAQRRLR--ASKKVARKKVTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS +ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN S +I +Q++ D Sbjct: 405 CSGGDTARSELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVDSGEILASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S + + LRY K+ I+ DAD DG HIA+LL F + ++ H+F+ Sbjct: 465 IAVAIGVDPGSD-QLDGLRYNKICILADADSDGLHIATLLCALFVKHFRPVVAAGHVFVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMD 634 PPL+R+ G ++ YA DE KQ I++ KGKI ++RFKGLGEM QL+ET M Sbjct: 524 MPPLYRVDLGKETFYALDEHEKQGIIDRIAAEKRKGKISVTRFKGLGEMNPLQLRETTMA 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 + R L+ + I DT ++ L+G K A +R +++ + D Sbjct: 584 PDTRRLVMLTIEDG----DDTDSRMDMLLGKKRASDRRAWLETYGNMAD 628 >gi|293192587|ref|ZP_06609541.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] gi|292820094|gb|EFF79091.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] Length = 706 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 232/702 (33%), Positives = 341/702 (48%), Gaps = 63/702 (8%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y+A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE + G+ + Sbjct: 6 TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDT 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + +V DNGRGIPV+ P + +E++ T LHAGGKF +Y SGGLHG Sbjct: 66 IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196 VG SVVNALS L V V R F RG P + Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFKPFVDGSTLKTV 184 Query: 197 EKVRNK-RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 KV+ GTR+ F D +IF GF LL + A+L + ++ E Sbjct: 185 GKVKKSLTGTRVRFWADFQIFPSTEGFSWENLLARARQTAFLVPGLTINCYDERGEEE-- 242 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---------------- 299 E F F GG+ + + + + TG+ T + Sbjct: 243 ---LHESFRFDGGVVDFANWLASDGPVTDTWHITGEGTYNETVQALDSETGHLRATEVER 299 Query: 300 -GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352 V+ A+ W S+ N I T +GGTH +G A+ + ++ + K Sbjct: 300 TCEVDIALRWGIGYDTTVQSFVNIIATPKGGTHVTGFEQAVLKTLRAAIDKNARKLKVGA 359 Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 + DD+ +++V EP+F GQTK L + + V + D + Sbjct: 360 KDGRPEKDDVQAGMTAVITVRFPEPQFEGQTKETLGTPQIRTVVNRVVSDWLKAKFASSK 419 Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467 + + +E V+ + R+ R +E++R K A+ LP KLADC TELF Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARLHKEISRKKNALETSSLPAKLADCRLEDVEETELF 479 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSA G+AK ARN QA+ P+RGKILNV A + + N + +++Q +G + Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582 + RY KVI+MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599 Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + + +Y + E+ + L ++ G+ K I R+KGLGEM A QL ET MD R+L Sbjct: 600 GRKKREYIYTYSEDELHRKLAALRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ + + +L+ +D LMG+ R +FI E ++ +D Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRKEFIVEESAGLD 700 >gi|187934374|ref|YP_001884982.1| DNA topoisomerase IV subunit B [Clostridium botulinum B str. Eklund 17B] gi|187722527|gb|ACD23748.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B] Length = 649 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 227/661 (34%), Positives = 350/661 (52%), Gaps = 36/661 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++NYD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + + + Sbjct: 4 KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ + T+ DNGRGIP HP KS +E++ T LH GGKFDN Y+ SGGLHGVG Sbjct: 64 VLNADKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208 +VVNALS + V V + + I+ Q+F G P+S L+ K +K GT++T Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQVIGKT-DKTGTKVT 181 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+PD +IF F + Q A+ + ++ ++ E +Y G Sbjct: 182 FKPDSEIF-SYIDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326 L ++ E++++I + E+ + E I + + + E SY N I T E Sbjct: 236 LLDFINYLNESKTVIHEIPIIFEGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GTHE+G + +TR K+ A+ ++ +DL IL + I P F GQTK Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + +A + + + ++ N AT L+ +E ++ R + +K + +K Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 E + ++++ A+G T Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 LI HL+L PPL+++ + K YA+ +E +K +E K I R+KG Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL ET ++ RTL++V I+ + I+ LMG + R ++ + Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647 Query: 680 F 680 F Sbjct: 648 F 648 >gi|146305639|ref|YP_001186104.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp] gi|145573840|gb|ABP83372.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp] Length = 632 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 238/651 (36%), Positives = 358/651 (54%), Gaps = 26/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+ Sbjct: 2 AQQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSIQ 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 59 VILHEDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 117 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS + VTV R + F+ G S LE V + GT + F PD K F Sbjct: 118 ISVVNALSTRVVVTVKRDGNEYQMSFADGFKASELEVIGTVGKRNTGTSVHFWPDAKYFD 177 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F +RL + ++KA L + + EK E+++ GL++YL + Sbjct: 178 SF-KFSVSRLKHVLKAKAVLCPGLSVTFEDK-------AAGEKVEWHYEDGLRSYLVDAV 229 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLR 335 + +E F G + V+WA+ W E + SY N I T +GGTH +GLR Sbjct: 230 SEFERLPAEPFVGSLAGN---KEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLR 286 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R + + +D+ +LS+ +++ +F+GQTK +L S +A Sbjct: 287 QGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAA 346 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V ++D F +L +P L E I + RL+ ++V RK + LPGKLA Sbjct: 347 FVSGVVKDAFSLWLNAHPETGLALAELAISNAGRRLK--AGKKVERKKITQGPALPGKLA 404 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ Sbjct: 405 DCAGQNPLRCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVH 464 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 DIAVAIGIDPGSSDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYV 523 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI G + YA D+ + IL+ +GK +++RFKGLGEM QL+ET M Sbjct: 524 AMPPLYRIDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTM 583 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 D N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 584 DPNTRRLVQLTLDDFEGTREVMDML---LAKKRAGDRKSWLETKGNLAEVL 631 >gi|117618295|ref|YP_858204.1| DNA topoisomerase IV subunit B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559702|gb|ABK36650.1| DNA topoisomerase IV, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 631 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 245/646 (37%), Positives = 359/646 (55%), Gaps = 23/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A +EV+ Sbjct: 2 STQYNADAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHARTLEVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LYEDQSLEVIDDGRGMPVDIHPE-EGVCGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS+ + VTV R ++ F +G + L R GTR+ F P+ F Sbjct: 118 VVNALSERVEVTVRRDGQVYDIAFEKGEKVQELTITGTCGRRNTGTRVRFWPEAHYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L + ++KA L + + K E+ + GLK YL ++ Sbjct: 178 R-FSVSKLEHLLKAKAVLCPGLTIKFLDK-------NTGIKLEWCYEDGLKDYLVDAVKQ 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + + + F G + + V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 FTCLPEQPFVGAFSTE---QSAVDWALCWLPEGGECLAESYVNLIPTAQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ ILS+ +++P+FAGQTK +L S + V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRCAYILSIKMQDPQFAGQTKERLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F YL N A +L E I ++ R+R + V RK + LPGKL DC Sbjct: 347 SGVVKDAFSLYLNSNTELAEQLAELCISSAQRRMR--AAKTVVRKKITQGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 GCADPMQGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEAGQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY KV I+ DAD DG HIA+LL F + L+ Q H+++ Sbjct: 465 SVAIGLDPDSDDL-SGLRYGKVCILADADSDGLHIATLLCALFVKHFRALVNQGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE+ K +L+ + + KGK+ ++RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDIGKEVYYALDEDEKNGVLQRVEAEKKKGKVMVTRFKGLGEMNPKQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ + + + Q L +A +R ++++E+ + Sbjct: 584 NTRRLVQLTMGPEAEGDETLQLMDMLLAKKRASDRREWLEEKGNLA 629 >gi|88856909|ref|ZP_01131561.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1] gi|88813877|gb|EAR23747.1| DNA gyrase subunit B [marine actinobacterium PHSC20C1] Length = 692 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 227/690 (32%), Positives = 334/690 (48%), Gaps = 63/690 (9%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 AS +Y A + +LEGLE VR RPGMYIG TD + L H EVIDN++DE + G+ + I V Sbjct: 2 ASSDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEVIDNSVDEALDGHGSEISV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + + V D RGIPV+ PK S +E++ T LHAGGKF + +Y SGGLHGVG Sbjct: 62 ILHADESVEVRDQARGIPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYAASGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201 SVVNALS+ L V V R ++ F RG P + + + Sbjct: 121 SVVNALSERLDVEVDRDGKTWAMSFHRGEPGTFADTGAPTPDAPFTPFVSGSELRIVGKV 180 Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 + GTR+ + D +IF A F + L+ + A+L + + ++ P Sbjct: 181 PKARTGTRVRYWADRQIFTKGATFQSDGLIDRLRQTAFLVPNLTLNVTDER-----GDEP 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHRGTV 302 E F F GG+ +++ + + TG + + V Sbjct: 236 RHESFAFEGGISEFVEHLATDPPITDIWRLTGSGGFTESVPVLQENGHMVSTEVSRDCVV 295 Query: 303 EWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAISII 358 + A+ W I S+ N I T +GGTH +G +L + ++ + + + Sbjct: 296 DVALRWGTGYDTVIKSFVNIIATPKGGTHMAGFEQSLLKFLRTETEKNSRRLKLGSDKLD 355 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD++ +L+V + EP+F GQTK L + + V + + + Sbjct: 356 KDDVLAGLTVVLTVRLPEPQFEGQTKEILGTPAVRSIVAKVIANSMAEKFASTKRDDKAQ 415 Query: 419 ----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 L+ V+ + R+ R +E RK A+ LP KL DC + +ELFIVEGDS Sbjct: 416 ASLVLDKVVAEMKSRISARAHKETQRRKNALESSSLPAKLVDCRSSDVANSELFIVEGDS 475 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 A G+AK R+ QA+LP+RGKILNV A + +N + ++Q +G + + Sbjct: 476 ALGTAKLGRDSEYQALLPIRGKILNVQKASISDMLSNAECASIIQVIGAGSGRSFDLASA 535 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587 RY KVIIM DADVDGAHI +LLLT F++ M D+I ++ PPL RI ++ + Sbjct: 536 RYGKVIIMADADVDGAHIRTLLLTLFFRYMPDMIRDGRVYAAVPPLHRIVVMNPGSKPNE 595 Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 ++Y + E+ +L KK GK + I R+KGLGEM A QL T MD N R L RV I+ Sbjct: 596 TIYTYSEKELNTVLASLKKSGKRYQDPIQRYKGLGEMDADQLATTTMDRNNRVLRRVNIS 655 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQE 676 + LMG + R +FI + Sbjct: 656 DAEGAGA----VFELLMGNEVAPRKEFIIQ 681 >gi|29828984|ref|NP_823618.1| DNA topoisomerase IV subunit B [Streptomyces avermitilis MA-4680] gi|29606089|dbj|BAC70153.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis MA-4680] Length = 707 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 238/687 (34%), Positives = 342/687 (49%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + I+V L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVIL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN---------------KRGTR 206 VNALS L V V R + F RG+P + + + GTR Sbjct: 140 VNALSARLDVEVDRSGHTHAISFRRGVPGAFATVGPDAKFDATAGLRKAKKIPRTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + + D +IF A L + + A+L + + + E E E F F Sbjct: 200 VRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYGLGEGGSKGE-ESFRFD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + ++ + F+G+ + T V+ A+ W Sbjct: 259 GGISEFCEYLATDKPVCDVLRFSGQGTFKETVPVLDDHGQMTPTEVTRELGVDVAMRWGT 318 Query: 311 ENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 S+ N I T +GGTH +G A+T+ + + + R DD + Sbjct: 319 GYDTTLKSFVNIIATPKGGTHVAGFEQAVTKTVNEVLRAKKLLRVAEDDVVKDDALEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A+R V N + +L +A V+E+ Sbjct: 379 VVVTVRLAEPQFEGQTKEVLGTSAARRIVTNVVSKELKAFLTSTKRDAAAQARVVLEKAV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV A + N + ++Q +G + + + RY K+I++ Sbjct: 499 NSEFQALLPIRGKILNVQKASVTDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIILLV 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 559 DADVDGAHIRILLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618 Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L E +K+ + K I R+KGLGEM A QL ET MD RTL R+ I+ L+ + Sbjct: 619 LRETLLELQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAS 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + LMG R +FI A+ +D Sbjct: 675 EQVFDLLMGNDVAPRKEFISSSAATLD 701 >gi|329667368|gb|AEB93316.1| topoisomerase IV subunit B [Lactobacillus johnsonii DPC 6026] Length = 622 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 227/629 (36%), Positives = 339/629 (53%), Gaps = 33/629 (5%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD L+HL E++DN++DE +AGY I V++ + +TV D GRG+P H Sbjct: 1 MYIGSTDRHGLNHLIYEIVDNSVDEAMAGYGKEINVTIHKDNSVTVQDFGRGMPTGMHE- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+E+ILT LHAGGKF Y+ SGGLHGVG SVVNALS L V V R + ++ Sbjct: 60 -SGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGVGSSVVNALSSYLKVRVVRDGQAYEEE 118 Query: 184 FSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G P+ L+ K ++K GT ITF+PDP IF ++ + + + A+L VK Sbjct: 119 FENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIFSTT-TYNYETIQERIRESAFLLKGVK 177 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + ++E +EF + G+K+++ E++ + ++F ++ G V Sbjct: 178 FTLTDEREPE------HHDEFLYEDGIKSFVSYLNEDKDTMG-DVFYFSGKQNGI---EV 227 Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--IS 359 E++ + + E S+ N + T +GG+HE+G R T+ YA+ + Sbjct: 228 EFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFNDYAKKQGLLKNKDKGLEG 287 Query: 360 DDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 D +LSV I E EF GQTK KL + A+ V++ + + +YL++N A Sbjct: 288 SDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIVYEQLSYYLMENGEFAQS 347 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 L++ + + R +K R+ +R +K L GKL ELF+VEGDSAG Sbjct: 348 LVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQSRNPKKNELFLVEGDSAG 407 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAKQ R+R QA+LPLRGK+LN A + I N++I ++ +G S ++ +D Y Sbjct: 408 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTIGAGVGSDFQIKDANY 467 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT----KSVYA 591 +K+IIMTDAD DGAHI LLLTFFY+ M ++E +++ PPL+++ +G K YA Sbjct: 468 DKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPLYKLQKGNGAKAKIKYA 527 Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 +E + ++ K + RFKGLGEM A QL ET M+ RTL+RV+I+ Sbjct: 528 WTDEELSEDSKDMGK----GFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDD---- 579 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASF 680 + + + LMG K R K+I E F Sbjct: 580 AQLAEKRVTTLMGDKVAPRRKWIDENVKF 608 >gi|304312518|ref|YP_003812116.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium HdN1] gi|301798251|emb|CBL46473.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium HdN1] Length = 629 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 251/647 (38%), Positives = 365/647 (56%), Gaps = 26/647 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +++ Y+A SI +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+AN + V Sbjct: 2 SANTYNAESIEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHANTVSV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + + DNGRG+PV+ HP+ + +E+IL TLHAGGKF N Y SGGLHGVG+ Sbjct: 59 ILHPDGSMEISDNGRGMPVDIHPEQ-GRPGVEVILCTLHAGGKFSNKNYTFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L VTV R + F G S LE + GT I F PDP F Sbjct: 118 SVVNALSSVLEVTVKRDGKVHRMGFKGGEKASELEVVGNCAKRDTGTTIRFLPDPSYFDT 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F ++LL + ++KA L R++ + G E++E+Y+ GL+ YL + Sbjct: 178 P-KFLVSKLLHLLRAKAVLCPRLRVTFKD-------AGTGEEQEWYYENGLRDYLMSSHV 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + L+ ++ F G + +WA++W E + SY N I T +GGTH +G R Sbjct: 230 DTPLLPADPFVGSVSGE---SEVADWAVSWLPEGGDLVAESYVNLIPTLQGGTHVNGFRS 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LT +++Y E R + + +DL A +LSV +++P+FAGQ K +L S Sbjct: 287 GLTDAMREYCEFRNLMPRGVKLSPEDLWDQASYVLSVKMQDPQFAGQIKERLSSRQIAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN E L E I + R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLSQNTQEGDALAELAINNANRRMR--AAKKVARKKVTAGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ + ELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN S +I +Q++ D Sbjct: 405 CTSQDSENGELFLVEGDSAGGSAKQARDREYQAVMPLRGKILNTWEVDSSEILASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S E+LRY K+ I+ DAD DGAHIA+LL F + +++ H+++ Sbjct: 465 IAVAIGVDPASSDL-ENLRYNKICILADADSDGAHIATLLCALFLRHFRPVVDAGHIYIA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGK-IEISRFKGLGEMLASQLKETAMD 634 PPL+RI G + YA DE KQ +L+ K K I+++RFKGLGEM QL+ET M Sbjct: 524 MPPLYRIDIGKEVFYALDEGEKQGVLDRIKAEKKRGQIQVTRFKGLGEMNPIQLRETTMA 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 + R L+++ + ++ L ++ +R +++++ + Sbjct: 584 RDTRRLVQLTVEDAESTCDLVDLL---LAKKRSSDRRAWLEDKGNLA 627 >gi|4176381|dbj|BAA37153.1| topoisomerase IV subunit [Pseudomonas aeruginosa] Length = 629 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 242/647 (37%), Positives = 354/647 (54%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVILH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ L LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 60 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELTLIKLHAGGKFSNKNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R + F+ G S LE V + GT + F PDPK F Sbjct: 119 NALSTRVEVRVKRDANEYRMTFADGFKDSDLEVIGTVGKRNTGTSVHFWPDPKYFDSA-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + E+ E++F GL++YL + Sbjct: 178 FSVSRLKHVLKAKAVLCPGLSVVFEDK-------NTGERVEWHFEDGLRSYLTDAVAELP 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G E + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 RLPDEPFCGNLEG---SKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 288 DAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L ++ +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 348 VVKDAFSLWLNEHAEIGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F + L+E H+++ PP Sbjct: 466 AIGVDPGASDL-AQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE + ILE K GK +++RFKGLGEM QL+ET MD N Sbjct: 525 LYRIDLGKDIYYALDEAERDGILERLAAEKKRGKPQVTRFKGLGEMNPLQLRETTMDPNT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ + +L+ L +A +R +++ + + + + Sbjct: 585 RRLVQLTLEDATGTLEIMDML---LAKKRAGDRKSWLESKGNLAEVL 628 >gi|119776175|ref|YP_928915.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B] gi|119768675|gb|ABM01246.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B] Length = 628 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 361/646 (55%), Gaps = 26/646 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y++ +I +L GLEPV+ RPGMY TD +HL EVIDN++DE +AG+A+ I+V Sbjct: 2 TNLYNSDAIEVLNGLEPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHASRIDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LQTDNSLEVIDDGRGMPVDIHPE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + +TV R ++ F G + L R GTR+ F P+P F Sbjct: 118 VVNALSRRVEITVRRDAQVYDMAFEHGDKVESLTVTGTCGRRNTGTRVHFWPEPSYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +L+ + ++KA L ++ ++ E E+YF GL YL++ + + Sbjct: 178 N-FSITKLIHLLKAKAVLCPGLRIKFTNK-------QTGEVHEWYFEAGLTDYLKSAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 ++ E F G +WAI W E E SY N I T GGTH +G R Sbjct: 230 APMLPQEPFVGSFAGNNE---AADWAITWLPEGGEYLAESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ ILS+ +++P+FAGQTK KL S + V Sbjct: 287 LLESMREFCEFRNLIPRGIKLSPEDIWDKTAFILSIKMQDPQFAGQTKEKLSSRQSAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +RD F YL + A L E I +++R++ K+ + TA LPGKL DC Sbjct: 347 SGIVRDAFSLYLNSHTDLAEMLAEMCISNAQKRMKAAKKVARKKVTA--GPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S +ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 405 SGQDPMTSELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVEASQVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY KV I+ DAD DG HIA+LL F + L+E+ H+++ Sbjct: 465 SVAIGCDPDSDDI-SELRYGKVCILADADSDGLHIATLLCALFLKHYRVLVERGHVYIAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE KQ IL+ G KGK +++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDIGKEVYYALDESEKQGILDRIAAEGKKGKPQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ I+ +++ L ++ +R +++ + Sbjct: 584 NTRRLVQLTIDDSDDTVALMDML---LAKKRSGDRKTWLETKGDLA 626 >gi|229588054|ref|YP_002870173.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens SBW25] gi|229359920|emb|CAY46774.1| topoisomerase IV subunit B [Pseudomonas fluorescens SBW25] Length = 634 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 371/655 (56%), Gaps = 28/655 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 VHVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS+ + V V R + F+ G + L+ V + GT + F PDPK Sbjct: 118 VGISVVNALSNHVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + G EK E+++ GL++YL+ Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------GTNEKVEWHYEDGLRSYLED 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + + +E F G + V+WA+ W E + SY N I T +GGTH +G Sbjct: 230 SVRDFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E + R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEYRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L ++P L E I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAADM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 MD N R L+++ ++ T + ++ L+ K A +R +++ + + + +G Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVLG 634 >gi|114564488|ref|YP_752002.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400] gi|114335781|gb|ABI73163.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400] Length = 628 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 26/646 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 SNQYTSDAIEVLNGLDPVKRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ H + +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHTDNSLEVTDDGRGMPVDIHAE-EGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + ++V R I+ F G + L R GTR+ F PD F Sbjct: 118 VVNALSTRVEISVRRDAQIYQMAFENGFKVEELVVTGTCGRRNTGTRVHFWPDVSYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ++L+ + ++KA L ++ ++ + E+++ GL YL+ +++ Sbjct: 178 N-FSVSKLIYILRAKAVLCPGLRIKFTNK-------QNGDVHEWFYESGLTDYLKEAIKD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 L+ E F G + K EWAI W E E SY N I T GGTH +G R Sbjct: 230 SVLLPEEPFVGSFKGK---LEAAEWAITWLPEGGESLSESYVNLIPTPLGGTHVNGFRQG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R I + +D+ A ILS+ +++P+FAGQTK KL S + V Sbjct: 287 LLESMREFCEFRNLVPRGIKLSPEDIWDRAAFILSIKMQDPQFAGQTKEKLSSRQSSAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 RD F +L N A +L E I + RL+ K +V RK LPGKL DC Sbjct: 347 SGIARDAFSLWLNSNTELAEQLAELCIGNALRRLKAAK--KVARKKVTSGPALPGKLTDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN S ++ +Q++ ++ Sbjct: 405 SGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDSGQVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 SIAIGCDPDSDDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVNNGHVYIAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPLFRI G + YA DE K IL+ ++ KGK++++RFKGLGEM QL+ET MD Sbjct: 524 PPLFRIDIGKEVFYALDEAEKVGILDRITAENKKGKVQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 N R L+++ I+ ++ L +A +R +++ + Sbjct: 584 NTRRLVQLTIDDADETVALMDML---LAKKRAPDRKSWLETKGDLA 626 >gi|330501591|ref|YP_004378460.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01] gi|328915877|gb|AEB56708.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01] Length = 632 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 239/651 (36%), Positives = 358/651 (54%), Gaps = 26/651 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+ Sbjct: 2 AQQNAYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSIQ 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVG Sbjct: 59 VILHEDNSLEVLDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVG 117 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 ISVVNALS + VTV R + F+ G S LE V + GT + F PD K F Sbjct: 118 ISVVNALSTRVVVTVKRDGNEYQMSFADGFKASDLEVIGTVGKRNTGTSVHFWPDAKYFD 177 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 F +RL + ++KA L + + EK E+ + GL++YL + Sbjct: 178 SF-KFSVSRLKHVLKAKAVLCPGLSVTFEDK-------AAGEKVEWLYEDGLRSYLVDAV 229 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLR 335 + +E F G + V+WA+ W E + SY N I T +GGTH +GLR Sbjct: 230 SEFERLPAEPFCGALAGN---KEAVDWALLWLPEGGDAVQESYVNLIPTAQGGTHVNGLR 286 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R + + +D+ +LS+ +++ +F+GQTK +L S +A Sbjct: 287 QGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREAAA 346 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V ++D F +L NP +L E I + RL+ ++V RK + LPGKLA Sbjct: 347 FVSGVVKDAFSLWLNANPETGLQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLA 404 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ Sbjct: 405 DCAGQNPLRCELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGSEVLASQEVH 464 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 DIAVAIGIDPGSNDL-SGLRYGKICILADADSDGLHIATLLCALFVRHFRPLVDAGHVYV 523 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI G + YA D+ + IL+ +GK +++RFKGLGEM QL+ET M Sbjct: 524 AMPPLYRIDLGKEIFYALDDAERDGILDRLVAEKRRGKPQVTRFKGLGEMNPPQLRETTM 583 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 D N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 584 DPNTRRLVQLTLDDFDGTREVMDML---LAKKRASDRKNWLETKGNLAEVL 631 >gi|297156705|gb|ADI06417.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1] Length = 710 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 242/689 (35%), Positives = 344/689 (49%), Gaps = 53/689 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + IEV L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDRIEVIL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206 VNALS L V V R S F RG+P E + + + GTR Sbjct: 140 VNALSSRLDVEVDRDAKTHSISFRRGVPGIFTESGPEAPFDPSSGLLKGKRVPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK--EIAEKYGIPEKEEFY 264 I + D +IF A L + A+L + ++ E + P +E F Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLIVRDERTAEGRDGAEGPSEEIFR 259 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAW 308 F GG+ + + +++++ +G+ + T V+ A+ W Sbjct: 260 FDGGISEFCEYLAQDKAVCDVLRLSGQGTFKETVPVLDERGHMTPTEVTRELGVDIALRW 319 Query: 309 CEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMIS 365 T S+ N I T +GGTH SG ++T+ + + + R DD M Sbjct: 320 GTGYDSTTKSFVNIIATLKGGTHVSGFERSVTKTVNEVLRTAKLLRVAEDDVVKDDAMEG 379 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 +++V + EP+F GQTK L + A R V N + +L + + V+E+ Sbjct: 380 LTAVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSTKRDDKQQARAVLEK 439 Query: 426 -----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK Sbjct: 440 IVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKL 499 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 ARN QA+LP+RGKILNV A + N + ++Q +G + + + RY KVI Sbjct: 500 ARNSEFQALLPIRGKILNVQKASVSDMLKNAECGSIIQVIGAGSGRTFDIDQARYGKVIF 559 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDE 594 + DADVDGAHI LLLT F + M ++EQ +F PPL R+ +G K VY + + Sbjct: 560 LADADVDGAHIRILLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQDKYVYTYSD 619 Query: 595 EHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 Q+ L + ++ + K I R+KGLGEM A QL ET MD RTL R+ I+ L+ Sbjct: 620 HELQETLLDLQRRNVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LE 675 Query: 654 DTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R +FI A+ +D Sbjct: 676 AAEQVFDLLMGNEVAPRKEFITNSAATLD 704 >gi|262195363|ref|YP_003266572.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM 14365] gi|262078710|gb|ACY14679.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM 14365] Length = 647 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 263/657 (40%), Positives = 371/657 (56%), Gaps = 23/657 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +Y A I +LEGLEPVR RP MYIGGTD+ HHL E++DN++DEVI +A ++V Sbjct: 2 AQSSYTAQDITVLEGLEPVRKRPAMYIGGTDKVGFHHLLWEIVDNSIDEVINKHATRVDV 61 Query: 100 SLDGNGF-LTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-DNSTYEISGGLHGV 157 +L +G +T+ DNGRGIP++ PK+ K LEII+TTLHAGGKF Y+ SGGLHGV Sbjct: 62 TLHDDGTRVTIEDNGRGIPIDTLPKY-KKPALEIIMTTLHAGGKFERGKNYKHSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS EL V R ++ Q + RG+P ++K R GT ITF PDP+IFG Sbjct: 121 GASVVNALSSELIAEVKRDGDLYQQTYERGVPTGKMKKAGSSRG-SGTIITFTPDPQIFG 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 K FDA + + ++K+YL VK + G+ YL L Sbjct: 180 KKQRFDAKHIAERLEAKSYLHRGVKLVLHDKLSKPNATHT-----YQHDQGIAEYLSKLL 234 Query: 278 ENRSLISSEIFTGK------TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHE 331 +R + E+ G V + I SY N I T GGTHE Sbjct: 235 GDRQYPTVPTKMDGLYFERAGEEDGDIDLEVALVWTE-APDEYIRSYVNGIPTPAGGTHE 293 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GL+ A+ +G++ Y + + I++ ++D+ V ILS ++ +P+F GQTK +L + Sbjct: 294 QGLKSAVVKGMRNYMNTHKLVPKGITLTAEDIREGLVVILSCYVGDPQFQGQTKQRLNNT 353 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKTAIRKLR 448 + V+ ALR + Y QN A ++ +I + R+ R + + +L Sbjct: 354 EVSAQVDGALRPAIERYFNQNQNIAEAVVARMILAARARIASRAASQAVSRKTAVSHRLN 413 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS +ELFIVEGDSAGGSAKQ R+R QA+LPLRGK+LN A ++K+ Sbjct: 414 LPGKLADCSSTNPGDSELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTQKLL 473 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 N+++ D+V ALGC + LRY K+ ++ DAD DG HIA+LLLTFFY+ M LI+ Sbjct: 474 ANKELSDIVSALGCGMGPKLDLSRLRYGKIFLLMDADADGHHIATLLLTFFYRHMRQLID 533 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 H++L PPL+RI G ++ +A D+ HK +IL + + K I+RFKGLGEM S L Sbjct: 534 HGHVYLAQPPLYRIDLGKETFWALDDIHKDQILANARSN--AKPNITRFKGLGEMNPSVL 591 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 K+T +D R+ LR+ + + T +I +LMG A R+ I + +D++ Sbjct: 592 KKTTLDPRYRSALRITVPEGE--ALGTDQTIAQLMGKDASARYDIITDGIHEVDELD 646 >gi|239944798|ref|ZP_04696735.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL 15998] gi|239991263|ref|ZP_04711927.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL 11379] gi|291448262|ref|ZP_06587652.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL 15998] gi|291351209|gb|EFE78113.1| DNA topoisomerase IV subunit B [Streptomyces roseosporus NRRL 15998] Length = 708 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 349/709 (49%), Gaps = 53/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 A S NY A + +LEGLE VR RPGMYIG TD + L H Sbjct: 1 MTAETSVPSTAMLAAAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E+IDN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHA Sbjct: 61 EIIDNSVDEALGGYCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF +Y SGGLHGVG SVVNALS L V V R + S F RG+P E+ Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRSSATHSISFRRGVPGMFTEQGPDS 179 Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 + + GTR+ + D +IF A + L + + A+L + Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDAKLNLETLYQRARQTAFLVPGLTII 239 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293 ++ + + E F F GG+ + + +++++ + +G Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297 Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 + T V+ A+ W S+ N I T +GGTH +G +LT+ + + Sbjct: 298 GHMTATEVTRELGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357 Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + R DD + +++V + EP+F GQTK L + A R V N + Sbjct: 358 SAKMLRVAEDDVVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELK 417 Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 +L +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 418 SFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q + Sbjct: 478 VDRSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + + RY KVI+MTDADVDG+HI +LLLT F + M ++E +F PPL Sbjct: 538 GAGSGRTFDIDAARYGKVIMMTDADVDGSHIRTLLLTLFQRYMRPMVEAGRVFAAVPPLH 597 Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 RI +G K VY + + ++ L EF +K+ + K I R+KGLGEM A QL ET M Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702 >gi|145631948|ref|ZP_01787702.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021] gi|144982399|gb|EDJ89973.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021] Length = 632 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQSSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|164510814|emb|CAK18891.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius] Length = 637 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 222/628 (35%), Positives = 336/628 (53%), Gaps = 29/628 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD++ LHHL EV+DN++DE++ GY N I V+++ + +TV DNGRG+P H Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS+ L V + R IF Q+ Sbjct: 59 RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ G K+ K GT +TF+PD +IF F+ L + Q A+L +K Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + E+ E +++ G+K ++ E + ++ T + + + Sbjct: 179 TLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQ 233 Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 + + + I S+ N + T +GGTHE G + A+TR +YA + ++ +D Sbjct: 234 YNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGND 290 Query: 362 LMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 + I+SV I E +F GQTK+KL + +A+ V+ + + YL + + L+ Sbjct: 291 IREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLV 350 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 + I+ + R RK RE R K L GKL EL++VEGDSAGG Sbjct: 351 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 410 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+R QA+LPLRGK++N A E I N++I ++ +G + + +D Y Sbjct: 411 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNYN 470 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAH 592 ++IIMTDAD DGAHI LLLTFF++ M L+ +++ PPL+++ +G K YA Sbjct: 471 RIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAW 530 Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 +E +K+ E K + R+KGLGEM QL ET M+ RTL+RV+I+ ++ S Sbjct: 531 TDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSS 586 Query: 653 KDTQDSINKLMGTKADERFKFIQERASF 680 + ++ LMG K R ++I+ F Sbjct: 587 QR----VSTLMGDKVAPRREWIERHVQF 610 >gi|145639071|ref|ZP_01794679.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII] gi|145272043|gb|EDK11952.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII] gi|309751023|gb|ADO81007.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2866] Length = 632 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|315633998|ref|ZP_07889287.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis ATCC 33393] gi|315477248|gb|EFU67991.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis ATCC 33393] Length = 634 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 247/648 (38%), Positives = 355/648 (54%), Gaps = 22/648 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + + NY A+ I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IE Sbjct: 2 TMTTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIE 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L + + V DNGRG+PV+ HP S +E+I++ LHAGGKF N Y SGGLHGVG Sbjct: 59 VILHKDQSIEVTDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVG 117 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS+ + VTV R ++ F G + L + + D Sbjct: 118 ISVVNALSERVDVTVKRNGEVYKIAFENGQKVEDLTVIGTCGRRTTGTTVHFKPNPKYFD 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L ++ + E + + GL YL + Sbjct: 178 SEKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNDTEDT-------WLYQDGLNDYLMEAVN 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + + F G+ + + + V WA+ W E E SY N I T GGTH +GLR Sbjct: 231 GLVTLPEQPFIGEFKGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQ 287 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++++ E R + + +DDL +LS+ +++P+FAGQTK +L S + Sbjct: 288 GLLDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVF 347 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 + ++D F +L QN A L + I ++ RLR ++V RK + LPGKLAD Sbjct: 348 IGGVVKDAFSLWLNQNVQTAELLADMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLAD 405 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + TELF+VEGDSAGGSAKQAR R QA+LPLRGKILN E++ +Q++ D Sbjct: 406 CSSQDINLTELFLVEGDSAGGSAKQAREREYQAILPLRGKILNTWEVSPEQVLASQEVHD 465 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + LRY KV I+ DAD DG HIA+LL F + L+EQ H+++ Sbjct: 466 IAVALGIDPDNDDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVEQGHVYVA 524 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE K IL+ K KGK + RFKGLGEM QL+ET MD Sbjct: 525 MPPLYRIDLGKEVFYALDESEKDAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 N R L+++ ++T ++++ L+ K A++R ++Q + +D Sbjct: 584 NTRRLVQLTFEAQGEQSQETIETMDMLLAKKRAEDRKNWLQAKGDQVD 631 >gi|254516014|ref|ZP_05128074.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3] gi|219675736|gb|EED32102.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3] Length = 640 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 257/661 (38%), Positives = 371/661 (56%), Gaps = 28/661 (4%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEV 89 P S + A +Y + SI +L GLEPVR RPGMY TD +HL E+IDN++DE Sbjct: 2 PRSFQSGDFPAVSDYSSESIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEIIDNSVDEA 58 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A I+V L +G L+ D+GRG+PV+ HP+ K +E+IL TLHAGGKF + Y+ Sbjct: 59 LAGFARQIDVVLHTDGSLSASDDGRGMPVDMHPEQ-KKPGVEVILCTLHAGGKFSSKNYQ 117 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 SGGLHGVG+SVVNALS +L VT+ R + F+ G S LE + + GT + Sbjct: 118 FSGGLHGVGVSVVNALSKQLTVTIRRDGEVHQMSFAGGEKTSELEVIDTCGKRNTGTNVR 177 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP+ F F RL + ++KA L ++ + +K+ EKEE+Y+ G Sbjct: 178 FTPDPQYFDSIN-FSVPRLQHVLRAKAVLCPGLRVTFFDEKKN-------EKEEWYYEDG 229 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDE 326 L YL + + + + +E FTG V+WA+ W E E SY N I T + Sbjct: 230 LTDYLLSATDGFTTLPTEPFTGSFSGSTE---AVDWAVQWLPEGGELITESYVNLIPTAQ 286 Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTH +GLR L ++ + E + R + + DD+ +LS + +P+F+GQTK Sbjct: 287 GGTHVNGLRTGLLDAMRDFCEIRSLLPRGVKLAPDDIWERCSYVLSSKLEDPQFSGQTKE 346 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L S +A V +D F +L Q+ +A L E I ++ RLR ++V RK Sbjct: 347 RLSSREAAAFVSGVAKDAFSLWLNQHTSDAEALAELCINTAQRRLR--SAKKVVRKKVSA 404 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+ Sbjct: 405 GPALPGKLADCSGEDISRTELFLVEGDSAGGSAKQARDREIQAILPLRGKILNTWEVDSQ 464 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 +I +Q++ ++ ALG LRY KV I+ DAD DG HIA+L+ F + Sbjct: 465 EILASQEVHNISIALGIDPADDDL-SGLRYGKVCILADADSDGLHIATLICALFVRHFRP 523 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEML 624 L+ H+++ PPL+RI G + YA DE KQ IL+ + K GK+ + RFKGLGEM Sbjct: 524 LVSAGHVYVAMPPLYRIDIGKEVFYALDEAEKQGILDRIEAEKKRGKVNVQRFKGLGEMN 583 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDD 683 QL+ET M + R L+++ + + +T + ++ L+ K A +R +++ + + Sbjct: 584 PLQLRETTMSPDTRRLVQLRLE----AGDETNEMLDMLLAKKRAGDRKSWLETKGDLAEV 639 Query: 684 V 684 + Sbjct: 640 L 640 >gi|71894602|ref|YP_278710.1| topoisomerase IV subunit B [Mycoplasma synoviae 53] gi|71851390|gb|AAZ43999.1| topoisomerase IV subunit B [Mycoplasma synoviae 53] Length = 641 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 239/655 (36%), Positives = 359/655 (54%), Gaps = 30/655 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y A SI+ L+GLE VR RPGMYIGG D LHHL +E++DN++DE +AGYA+ I V Sbjct: 2 PNNLYTAESIKKLKGLEAVRKRPGMYIGGADIHGLHHLVAEIVDNSIDEALAGYASEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L + ++V DNGRGIPVE K K+ +E++ T LHAGGKF + +Y+ SGGLHGVG Sbjct: 62 TLHSDLSVSVFDNGRGIPVEKV-KGEFKTAVELVFTELHAGGKFSSDSYKTSGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L V V+R + + F + + + ++ KRGT + F PD K F Sbjct: 121 SVVNALSSKLEVIVSRNDKSYKTAFIQ-DSIVEKTHEIPLQFKRGTLVKFWPDYK-FFKD 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 A + + + + + ++L +K + + + E + GL+ +L + Sbjct: 179 ARLNFSTIAERLKESSFLVSNLKITIIDEIKNHK-------EVYQSQKGLEEFLDFINGS 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVAL 338 +S+IS + +T K VE+A + ++ I S+ N + T +GG+HE+G++ A Sbjct: 232 KSVISKPVSYKETLKN----IEVEFAFQYSDDYSSIILSFVNNVKTIDGGSHEAGIKSAF 287 Query: 339 TRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 + I YA K+ +D+ ILS+ I E EF GQTK+KL + +A+ Sbjct: 288 VKVINDYAFKEAFIKKQNIFDFEDIKEGLSLILSLKIPENLLEFVGQTKSKLGTTEARHI 347 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA---IRKLRLPGK 452 VE + + + N EA ++ + E RL RK+R+ NRK+ K L K Sbjct: 348 VEEIATKKLEIWFLDNKKEAKNIVNKIKNAYEIRLEERKRRQENRKSKNILKEKYILSDK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L ELF+VEGDSAGGSAK RNR+ QA+LPLRGK++N + I N + Sbjct: 408 LTPAMSKNPLEKELFLVEGDSAGGSAKSGRNRNFQAILPLRGKVINSEKSKMLDILENTE 467 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 I ++ ++G + +Y K+IIMTDAD DGAHI LLLTFFY+ M LIE + Sbjct: 468 IATIINSIGAGFGKDFDSSKAQYNKIIIMTDADTDGAHIQILLLTFFYRFMRKLIEDGKI 527 Query: 573 FLISPPLFRITQGTK--SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++ PL+++T +K YA D+ + ILE K+ + EI R+KGLGEM + QL E Sbjct: 528 YIALAPLYKVTYKSKNQYYYAWDDSELKDILE---KNAQSSYEIQRYKGLGEMNSDQLWE 584 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ RTL++ I+ + + ++ LMG R ++I +F +D Sbjct: 585 TTMNPETRTLIKATISDAI----LAEKRVSTLMGDNVKIRKEWIDNNVNFSNDDD 635 >gi|239621278|ref|ZP_04664309.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515739|gb|EEQ55606.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 758 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 239/756 (31%), Positives = 342/756 (45%), Gaps = 118/756 (15%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A + +LEGL+ VR RPGMYIG TD + L H E+IDN++DE +AG+ N I V Sbjct: 2 PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + V DNGRGIPV+ PK S +E++LT LHAG KF NS+Y GGLHGVG Sbjct: 62 TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195 SVVNALS L V V R F +G P + LE Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180 Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252 KV GTRI + DP+IF A F +L+ + ++L +K + Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240 Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263 + P +E+F Sbjct: 241 ATDTVEATDDATVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300 Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304 GG+K ++ + + G+ K + V+ Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGELHAQEIERTCGVDI 360 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358 A+ W I S+ N + T GGTH G A+T+ I+K E K +++ Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420 Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD+ V +++ + EP+F GQTK L + + V F + + Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480 Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 + LE ++ R++ RK +E RK A+ +P KL+DC ELFIVEG Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+AK ARN QA+LP+RGKILNV A ++ +N++ ++Q +G + + E Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587 RY K+I+MTDADVDGAHI LLLT FY+ M LIE +++ PPL RI + + Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660 Query: 588 SVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 +Y + ++ L + KKH +I R+KGLGEM A QL +T MD R L R+ + Sbjct: 661 YIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG R +FI + A D Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752 >gi|260583321|ref|ZP_05851095.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127] gi|260093634|gb|EEW77548.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127] Length = 632 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|168186943|ref|ZP_02621578.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund] gi|169295143|gb|EDS77276.1| DNA gyrase subunit B [Clostridium botulinum C str. Eklund] Length = 652 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 217/663 (32%), Positives = 344/663 (51%), Gaps = 34/663 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++YD + + LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 5 QEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNK 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + + L+ + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHG Sbjct: 65 VVLILNKDKSVTIMDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206 VG +VVNALS+ L V V ++ ++ Q+F S +K +K GT+ Sbjct: 124 VGAAVVNALSEWLEVEVYQKGHVYKQRFEYAEDKSLNKKMPGTPIFPLKIAGDTDKTGTK 183 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF+PD ++F F + + Q A+ + + +++ ++ Sbjct: 184 ITFKPDKEVFSTT-EFKFEVIDERLQELAFQNKGITLVVKDERKEEVIEKE-----YHSE 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GL ++ E++ I + + EK+ + + E I + + + I SY N I T Sbjct: 238 RGLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCIQFTDSSTENIASYVNNIPT 297 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL IL V I P F GQ Sbjct: 298 TESGTHETGFKTGMTRIFKEWAKKLNILKEKDKGFEGDDLREGMTAILRVKISNPIFEGQ 357 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + +A + ++ N AT+++ + + R + +K + +K Sbjct: 358 TKTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKK 417 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 L GK++ C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 418 VGKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+ Sbjct: 478 QRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL++ PPL+++ + +K S YA+ +E +E K I R+ Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEVSKYAYSDEELNSAKKEIGKGAL----IQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL +T ++ RTL ++ I + I+ LMG + R ++ + Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649 Query: 678 ASF 680 A F Sbjct: 650 AEF 652 >gi|188588859|ref|YP_001920142.1| DNA topoisomerase IV subunit B [Clostridium botulinum E3 str. Alaska E43] gi|188499140|gb|ACD52276.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43] Length = 649 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 227/661 (34%), Positives = 349/661 (52%), Gaps = 36/661 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++NYD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + + + Sbjct: 4 KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ + T+ DNGRGIP HP KS +E++ T LH GGKFDN Y+ SGGLHGVG Sbjct: 64 ILNEDKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208 +VVNALS + V V + + I+ Q+F G P+S L+ K +K GT++T Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTKVT 181 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+PD +IF F + Q A+ + ++ ++ E +Y G Sbjct: 182 FKPDSEIFSS-TDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDE 326 L ++ E++++I E+ + E I + + + E SY N I T E Sbjct: 236 LLDFINYLNESKTVIHETPIIFDGERTVNNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GTHE+G + +TR K+ A+ ++ +DL IL + I P F GQTK Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + +A + + + ++ N AT L+ +E ++ R + +K + +K Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 E + ++++ A+G T Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 LI HL+L PPL+++ + K YA+ +E +K +E K I R+KG Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL ET ++ RTL++V I+ + I+ LMG + R ++ + Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647 Query: 680 F 680 F Sbjct: 648 F 648 >gi|269115287|ref|YP_003303050.1| Topoisomerase IV subunit B [Mycoplasma hominis] gi|21903715|gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114] gi|268322912|emb|CAX37647.1| Topoisomerase IV subunit B [Mycoplasma hominis ATCC 23114] Length = 639 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 223/648 (34%), Positives = 351/648 (54%), Gaps = 32/648 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY+AS +++L+GL+ VR RPGMYIG TD LHHL E+ DNA+DE ++G+AN I V+L Sbjct: 4 NNYEASDLKVLKGLDAVRKRPGMYIGSTDSSGLHHLIWEIFDNAIDEALSGFANKIIVTL 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV H KS +E++ T LHAGGKF + Y+ SGGLHGVG SV Sbjct: 64 KKDSSVIVEDNGRGIPVNKHE--SGKSGVELVFTELHAGGKFGDGAYKTSGGLHGVGSSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS ++ VTV R + F + + + + GT++ F D IF + Sbjct: 122 VNALSSKVEVTVWRDKKAYFTAFQQDTIIEKTHEISPTTKQ-GTKVQFWADFSIFKK-SK 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + + + + ++L + + + E F G+K Y+ E + Sbjct: 180 YSPEIIKEKLREASFLMPNLTIEFYNE-------NTDEHVTFKTKDGIKEYINFVGEGKK 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 IS + + ++ A+ + + I S+ N + T +GGTHE+ L+ ALT+ Sbjct: 233 FISEIFYASGM---CNYGIEIDLALVYTDGYSESIYSFVNNVKTRDGGTHETALKTALTK 289 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I YA + I+ D+ + ++S+ + E EF GQTK KL + +A+ VE+ Sbjct: 290 TINDYASKNGLAKKITFEGSDVREGIIAVISLKVPEEILEFVGQTKDKLGTPEAREVVED 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR---KLRLPGKLAD 455 + F +L +N IEA K++ + + E ++ R + RK + + L GKL Sbjct: 350 FVSQKFYFFLNENKIEAEKIISKIKKAYEAKVAARNAKNEARKIKNKFENRKILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 ELF+VEGDSAGGSAK RNR QA+LPLRGK++N A + N++I Sbjct: 410 AQSKNPAVKELFLVEGDSAGGSAKLGRNRVTQAILPLRGKVINTDKAKLSDVLANEEIAT 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G + ++ +Y K+IIMTDAD DGAHI +LLLTFF++ M L+E +++ Sbjct: 470 IINTIGAGIGEDFNLKNAQYHKIIIMTDADTDGAHIQTLLLTFFWRYMKKLVENGMVYIA 529 Query: 576 SPPLFRI---TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL++I ++ T+ +YA DE+ ++I ++ EI R+KGLGEM A QL ET Sbjct: 530 LPPLYKISIKSKNTQPLYAWDEDQLKEITSKYTN-----YEIQRYKGLGEMNADQLWETT 584 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R++++V++ ++ + +++ LM R ++I F Sbjct: 585 MNPETRSIIKVDVEDEI----LVERNVSTLMSDDVIARKQWINNNVDF 628 >gi|251778309|ref|ZP_04821229.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082624|gb|EES48514.1| DNA gyrase subunit B [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 649 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 227/661 (34%), Positives = 351/661 (53%), Gaps = 36/661 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++NYD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + + + Sbjct: 4 KNNNYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCIWEILDNAIDEITNGYGDKVTI 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L+ + T+ DNGRGIP HP KS +E++ T LH GGKFDN Y+ SGGLHGVG Sbjct: 64 ILNEDKSATIYDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHGVGA 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRIT 208 +VVNALS + V V + + I+ Q+F G P+S L+ K +K GT++T Sbjct: 123 AVVNALSKWVEVEVYQNSNIYRQRFEYAFDKELKRSMPGTPVSKLQAIGKT-DKTGTKVT 181 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+PD +IF F + Q A+ + ++ ++ E +Y G Sbjct: 182 FKPDSEIFSS-TDFKFDVIDSRLQELAFQNKGIRLELIDRRKDEEIQKE-----YYSENG 235 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNTILTDE 326 L ++ E++++I E+ ++ + E I + + + E SY N I T E Sbjct: 236 LLDFINYLNESKTVIHETPIIFDGERTVSNLQVQGEICIQFTDSSTEYIASYVNNIPTTE 295 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GTHE+G + +TR K+ A+ ++ +DL IL + I P F GQTK Sbjct: 296 AGTHETGFKTGMTRAFKEGAKRLNLIKEKDKEFEGNDLREGMTAILRIKITNPIFEGQTK 355 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 TKL + +A + + + ++ N AT L+ +E ++ R + +K + +K Sbjct: 356 TKLGNNEAYTMMNDLVYTKLLEWIEDNKELATTLISNALESAKRREKIKKINDAEKKKVG 415 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 VGTAPLAGKIAVCTLKDKSVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQK 475 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 E + ++++ A+G T Y+++D++Y+KVIIM+DADVDG HI +L +T+ Y+ M Sbjct: 476 LENVLASEELRIFNAAIGTGTLENYKQDDMKYDKVIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 564 YDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 LI HL+L PPL+++ + K YA+ +E +K +E K I R+KG Sbjct: 536 RSLIANGHLYLAQPPLYKVYKVNKGSETVKYAYSDEELEKAKKEIGKGAL----IQRYKG 591 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL ET ++ RTL++V I+ + I+ LMG + R ++ + Sbjct: 592 LGEMNPEQLWETTLNPETRTLIQVTIDD----AAKAEKMISLLMGDVVEPRKNYMYKYGE 647 Query: 680 F 680 F Sbjct: 648 F 648 >gi|319897148|ref|YP_004135343.1| DNA topoisomerase iv, subunit b [Haemophilus influenzae F3031] gi|317432652|emb|CBY81015.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3031] Length = 632 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 ++ + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 EILPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEEQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|164510811|emb|CAK18889.1| topoisomerase IV subunit B [Staphylococcus pseudintermedius] Length = 637 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 222/628 (35%), Positives = 336/628 (53%), Gaps = 29/628 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG TD++ LHHL EV+DN++DE++ GY N I V+++ + +TV DNGRG+P H Sbjct: 1 MYIGSTDKRGLHHLVYEVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 K T+E+I T LHAGGKF Y+ SGGLHGVG SVVNALS+ L V + R IF Q+ Sbjct: 59 RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQ 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ G K+ K GT +TF+PD +IF F+ L + Q A+L +K Sbjct: 119 FAHGGVPQTKLIKKGKTKKTGTTVTFKPDAEIFKSATSFNFETLSERLQESAFLLQNLKI 178 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + E+ E +++ G+K ++ E + ++ T + + + Sbjct: 179 TLEDRRVGKERS-----EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQ 233 Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 + + + I S+ N + T +GGTHE G + A+TR +YA + ++ +D Sbjct: 234 YNDQY---SESIMSFVNNVRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGND 290 Query: 362 LMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 + I+SV I E +F GQTK+KL + +A+ V+ + + YL + + L+ Sbjct: 291 IREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLV 350 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRK---LRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 + I+ + R RK RE R K L GKL EL++VEGDSAGG Sbjct: 351 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 410 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK R+R QA+LPLRGK++N A E I N++I ++ +G + + +D Y Sbjct: 411 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGMGNDFNLKDSNYN 470 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAH 592 ++IIMTDAD DGAHI LLLTFF++ M L+ +++ PPL+++ +G K YA Sbjct: 471 RIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAW 530 Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 +E +K+ E K + R+KGLGEM QL ET M+ RTL+RV+I+ ++ S Sbjct: 531 TDEELEKLQREMGK----GFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSS 586 Query: 653 KDTQDSINKLMGTKADERFKFIQERASF 680 + ++ LMG K R ++I+ F Sbjct: 587 QR----VSTLMGDKVAPRREWIERHVQF 610 >gi|312958632|ref|ZP_07773152.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6] gi|311287175|gb|EFQ65736.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens WH6] Length = 634 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 369/655 (56%), Gaps = 28/655 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 VHVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS + V V R + F+ G + L+ V + GT + F PDPK Sbjct: 118 VGISVVNALSTLVRVKVKRDGNEYEMTFADGYKATDLQVIGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + G EK E+++ GL++YL+ Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------GTGEKVEWHYEDGLRSYLED 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + + +E F G + V+WA+ W E + SY N I T +GGTH +G Sbjct: 230 SVSDFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E + R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEYRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L ++P L E I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAADM-TQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIFYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 MD N R L+++ + T + ++ L+ K A +R +++ + + + +G Sbjct: 584 TMDPNTRRLVQLTLED----FAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVLG 634 >gi|239917827|ref|YP_002957385.1| putative glutamate--cysteine ligase/putative amino acid ligase [Micrococcus luteus NCTC 2665] gi|239839034|gb|ACS30831.1| putative glutamate--cysteine ligase/putative amino acid ligase [Micrococcus luteus NCTC 2665] Length = 701 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 234/699 (33%), Positives = 335/699 (47%), Gaps = 60/699 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ IE Sbjct: 2 PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L +G + V DNGRGIPV+ P+ S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197 SVVNALS L V V R + F RG P + + Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255 R + GTR+ + D +IF A F A L + AYL ++ + Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299 P +E F + GG+ +++ + G + Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355 V+ A+ W + S+ N I T +GGTH+SG AL + + + + Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSD 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + DD++ +L+V + EP+F GQTK L + +R V + L Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420 Query: 416 TKLLE----WVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 + + V+ + R+ R + RK A+ +P KLADC N +ELFIVE Sbjct: 421 KQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+AK AR+ QA+LP+RGKILNV A I N + L+Q +G + Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585 + RY KV++MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI T+G Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600 Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643 + +Y + E+ L ++ G+ E I R+KGLGEM A QL ET MD R L RV Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 I ++ + + LMG+ R FI A +D Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIISHADELD 695 >gi|289706927|ref|ZP_06503264.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58] gi|289556362|gb|EFD49716.1| DNA gyrase, B subunit, carboxyl terminus [Micrococcus luteus SK58] Length = 701 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 237/699 (33%), Positives = 337/699 (48%), Gaps = 60/699 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ IE Sbjct: 2 PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L +G + V DNGRGIPV+ P+ S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197 SVVNALS L V V R + F RG P + + Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255 R + GTR+ + D +IF A F A L + AYL ++ + Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299 P +E F + GG+ +++ + G + Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355 V+ A+ W + S+ N I T +GGTH+SG AL + + + + Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKAFRAQVEANARRLKAGSD 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQN 411 + DD++ +L+V + EP+F GQTK L + + + VE L Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420 Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 + LLE V+ + R+ R + RK A+ +P KLADC N +ELFIVE Sbjct: 421 RQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+AK AR+ QA+LP+RGKILNV A I N + L+Q +G + Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585 + RY KV++MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI T+G Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600 Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643 + +Y + E+ L ++ G+ E I R+KGLGEM A QL ET MD R L RV Sbjct: 601 EREVIYTYSEQELHATLARLEREGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 I ++ + + LMG+ R FI A +D Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIVSHADELD 695 >gi|329123547|ref|ZP_08252110.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius ATCC 11116] gi|327470363|gb|EGF15821.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius ATCC 11116] Length = 632 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|322691363|ref|YP_004220933.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|320456219|dbj|BAJ66841.1| DNA topoisomerase IV subunit B [Bifidobacterium longum subsp. longum JCM 1217] Length = 758 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 239/756 (31%), Positives = 342/756 (45%), Gaps = 118/756 (15%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A + +LEGL+ VR RPGMYIG TD + L H E+IDN++DE +AG+ N I V Sbjct: 2 PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + V DNGRGIPV+ PK S +E++LT LHAG KF NS+Y GGLHGVG Sbjct: 62 TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195 SVVNALS L V V R F +G P + LE Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180 Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252 KV GTRI + DP+IF A F +L+ + ++L +K + Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240 Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263 + P +E+F Sbjct: 241 ATDTVEATDDTTVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300 Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304 GG+K ++ + + G+ K + V+ Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGKGGELHAQEIERTCGVDI 360 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358 A+ W I S+ N + T GGTH G A+T+ I+K E K +++ Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420 Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD+ V +++ + EP+F GQTK L + + V F + + Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480 Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 + LE ++ R++ RK +E RK A+ +P KL+DC ELFIVEG Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+AK ARN QA+LP+RGKILNV A ++ +N++ ++Q +G + + E Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587 RY K+I+MTDADVDGAHI LLLT FY+ M LIE +++ PPL RI + + Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660 Query: 588 SVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 +Y + ++ L + KKH +I R+KGLGEM A QL +T MD R L R+ + Sbjct: 661 YIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG R +FI + A D Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752 >gi|317123186|ref|YP_004097298.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043] gi|315587274|gb|ADU46571.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043] Length = 704 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 373/709 (52%), Gaps = 50/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 S+ + + + + P ++ +YDAS+I +LEGLE VR RPGMYIG T E+ LHHL Sbjct: 2 SDAAETTADSTNRPNVDHRPNGVDYDASAITVLEGLEAVRKRPGMYIGSTGERGLHHLVY 61 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E++DN++DE +AGYA+ I+++L +G + V DNGRGIP + HP S +E++LT LHA Sbjct: 62 EIVDNSVDEALAGYADTIDITLLADGGVRVKDNGRGIPTDIHP-VEKMSAVELVLTQLHA 120 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF Y++SGGLHGVG SVVNALS L V V ++ + F+ G+P PL + E+ Sbjct: 121 GGKFGGGGYKVSGGLHGVGSSVVNALSTTLKVAVRQKGYVHRMSFTMGVPDGPLRR-EEA 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK---------- 249 ++ GT ITF P+ +IF FD L Q A+L+ + ++ Sbjct: 180 TDETGTTITFWPNAEIFDSV-DFDFETLRARLQQMAFLNKGLTLNLVDERVDQRAEASED 238 Query: 250 ------------------------EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISS 285 K + + + GGL Y+ ++ Sbjct: 239 VDLDGVESDLATVVEDGDNGHDVPTSGRKTLTAKTATYRYDGGLVDYVNHLNSSKRSEPV 298 Query: 286 EIFTGKTEKKGTHRG-TVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343 E + R ++E A+ W + +Y NTI T EGGTHE G R A+T+ I Sbjct: 299 HPEVIAIEVEDEARSLSLELAMQWTSAYSESVHTYANTINTHEGGTHEEGFRAAMTKLIN 358 Query: 344 KYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +A ++ ++ DD+ ++SV + +P+F GQTKTKL + + + V+ A+ Sbjct: 359 DFARKQNLLKEKDENLTGDDVREGLTAVISVKLGDPQFEGQTKTKLGNSEVKGFVQRAMT 418 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNI 460 D F H+L +P E ++ I+ + R+ RK RE R+ + LPGKL DC Sbjct: 419 DEFGHWLETHPNEGKDIVRKSIQAAAARMAARKAREATRRKGLLESGGLPGKLKDCQSKD 478 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +E+FIVEGDSAGGSA QARN QA+LP+RGKILNV A +KI NQ++ L+ A Sbjct: 479 PSLSEVFIVEGDSAGGSATQARNPHIQAILPIRGKILNVEKARIDKILANQEVQALISAF 538 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + RY K+I+M DADVDG HI +LLLT ++ M LIE +++L PPLF Sbjct: 539 GTGIGEDFDLAKARYHKIILMADADVDGMHIRTLLLTLLFRFMRPLIEAGYVYLAQPPLF 598 Query: 581 RITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDAN 636 R+ +A+ + + + E K +G + + R+KGLGEM +L ET MD + Sbjct: 599 RLRWSNAPHQFAYSDRERDGLTELGKANGWRLPKDNPVQRYKGLGEMNYQELGETTMDQS 658 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V ++ + LMG + R FIQ+ A + + Sbjct: 659 TRTLLQVTLDD----AAKADEVFAVLMGEDVESRRTFIQKNARDVRFLD 703 >gi|46191321|ref|ZP_00206767.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bifidobacterium longum DJO10A] gi|189439161|ref|YP_001954242.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium longum DJO10A] gi|189427596|gb|ACD97744.1| DNA topoisomerase plasmid partition protein B [Bifidobacterium longum DJO10A] Length = 758 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 238/756 (31%), Positives = 341/756 (45%), Gaps = 118/756 (15%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y A + +LEGL+ VR RPGMYIG TD + L H E+IDN++DE +AG+ N I V Sbjct: 2 PKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L +G + V DNGRGIPV+ PK S +E++LT LHAG KF NS+Y GGLHGVG Sbjct: 62 TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEK 195 SVVNALS L V V R F +G P + LE Sbjct: 121 SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI 180 Query: 196 KEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA-- 252 KV GTRI + DP+IF A F +L+ + ++L +K + Sbjct: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIIDENVPETA 240 Query: 253 ---------------------------EKYGIPEKEEF---------------------- 263 + P +E+F Sbjct: 241 ATDTVEATDDATVEPAQDQAPALDVSSDDAESPAEEDFSLTAGDQVVDGAFGEQPAHPRV 300 Query: 264 ---YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR----------------GTVEW 304 GG+K ++ + + G+ K + V+ Sbjct: 301 VEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGKGGELHAQEIERTCGVDI 360 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII----- 358 A+ W I S+ N + T GGTH G A+T+ I+K E K +++ Sbjct: 361 ALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNARKLKVNMKDSAMK 420 Query: 359 --SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD+ V +++ + EP+F GQTK L + + V F + + Sbjct: 421 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 480 Query: 417 KL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 + LE ++ R++ RK +E RK A+ +P KL+DC ELFIVEG Sbjct: 481 EQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 540 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+AK ARN QA+LP+RGKILNV A ++ +N++ ++Q +G + + E Sbjct: 541 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSFDIE 600 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGTK 587 RY K+I+MTDADVDGAHI LLLT FY+ M LIE +++ PPL RI + + Sbjct: 601 QSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGE 660 Query: 588 SVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 +Y + ++ L + K G +I R+KGLGEM A QL +T MD R L R+ + Sbjct: 661 YIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRME 720 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG R +FI + A D Sbjct: 721 D----AAQASEIFSLLMGDDVPPRKQFIVDNADDFD 752 >gi|319776382|ref|YP_004138870.1| DNA topoisomerase IV subunit B [Haemophilus influenzae F3047] gi|317450973|emb|CBY87202.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3047] Length = 632 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLTEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|254519462|ref|ZP_05131518.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA] gi|226913211|gb|EEH98412.1| DNA topoisomerase IV subunit B [Clostridium sp. 7_2_43FAA] Length = 649 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 227/664 (34%), Positives = 341/664 (51%), Gaps = 36/664 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N+ YD + + LE LEPVR+RPGMYIG T K LHH EV+DN++DE+ GY N Sbjct: 2 NEDLMKGYDVTDLTSLEKLEPVRIRPGMYIGSTGTKGLHHCVWEVLDNSIDEISNGYGNK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + ++ + +TV+DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHG Sbjct: 62 ATIVINKDKSITVIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF-----------SRGIPLSPLEKKEKVRNKRGT 205 VG +VVNALS L V V + I+ Q+F G P++ LE K +N GT Sbjct: 121 VGAAVVNALSSWLEVEVHQNGNIYKQRFGYAYDKELKRDMPGTPITKLEVVGKTKN-TGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++TF PD ++F F + + Q A+ + + ++ E +Y Sbjct: 180 KVTFMPDKEVFSSV-DFKIDVIDERLQELAFQNKGIHLELIDLRKEEEFRKE-----YYS 233 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEENPEITSYCNTIL 323 GL +++ E+++ + + E+ I SY N I Sbjct: 234 ERGLLDFIEYLNESKTTLHQVPIYFEGERVVNNIQMFGELCIQFTDSSTENIASYVNNIP 293 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 T E GTHE+G + +TR K+ A+ ++ DDL I+ + I P F G Sbjct: 294 TTEAGTHETGFKTGMTRAFKEGAKKLGLVKEKDKDFEGDDLREGMTAIVRIKITNPMFEG 353 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440 QTKTKL S +A + + F ++ N AT L+ ++ ++ R + +K E + Sbjct: 354 QTKTKLGSTEAYTMMNDLAYTKFSEWIEDNKEVATMLINNALQAAQRREKIKKINEAEKK 413 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 414 KVGKGAAPLAGKVAVCTLKDNTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTE 473 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 E + ++++ ALG T Y+EEDL+Y+K+IIM+DADVDG HI +L +T+ Y Sbjct: 474 KQKLENVLASEELKIFNTALGTGTLDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIY 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQ---GTKSV-YAHDEEHKQKILEEFKKHGKGKIEISR 616 + M LI HL+L PPL+++ + G + YA+ +E + + +E K I R Sbjct: 534 RYMRPLIANGHLYLAQPPLYKVYKTVKGKEVHKYAYSDEELENVKKEIGKGAL----IQR 589 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL +T ++ RTLL+V I + ++ LMG + R ++ + Sbjct: 590 YKGLGEMNPDQLWQTTLNPETRTLLQVTIED----AAKAEKMVSLLMGDIVEPRKTYMYK 645 Query: 677 RASF 680 F Sbjct: 646 YGEF 649 >gi|229844202|ref|ZP_04464343.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1] gi|229847154|ref|ZP_04467259.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1] gi|229809983|gb|EEP45704.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1] gi|229813196|gb|EEP48884.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1] gi|309973201|gb|ADO96402.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2846] Length = 632 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIKVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDNA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|254787783|ref|YP_003075212.1| DNA topoisomerase IV subunit B [Teredinibacter turnerae T7901] gi|237684233|gb|ACR11497.1| DNA topoisomerase IV, B subunit [Teredinibacter turnerae T7901] Length = 628 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 248/645 (38%), Positives = 363/645 (56%), Gaps = 26/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A I+V+L Sbjct: 3 NYTAEDIEVLTGLDPVKKRPGMY---TDTNRPNHLAQEVIDNSVDEALAGFARKIQVTLH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++V D+GRG+PV+ HP+ NK +E+IL+TLHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 60 KDNSISVADDGRGMPVDLHPEQ-NKPGVEVILSTLHAGGKFSNKNYQFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 NALS L VT+ R ++ F G + + GT + F PDPK F Sbjct: 119 NALSKILEVTIKRDGQVYRIGFQSGDKSVDLHVVDTCGKRNTGTSVRFLPDPKYFDSP-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L ++ ++ + E + +Y+ GL+ YL + Sbjct: 178 FSVSRLRHVLRAKAVLCPGLEVVFTDE-------QSGETDTWYYEDGLRDYLTAATQGWE 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + +E F G +WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 TLPAEPFVGSFSA---ATEAADWAVQWLPEGGEITQESYVNLIPTAQGGTHVNGLRTGLM 287 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +++Y E+ R + + DD+ + +LS + +P+F+GQTK +L S +A V Sbjct: 288 EAMREYCEIRNLIPRGVKLAPDDIWANCCFVLSSKLADPQFSGQTKERLSSREAAAFVSG 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +D F +L QN + KL ++ I +++R+R +++ RK LPGKLADCS Sbjct: 348 VAKDAFSLWLNQNTDDGDKLADYCISNAQKRVR--SSKKIARKKVTAGPALPGKLADCSS 405 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + ELF+VEGDSAGGSAKQAR+R NQA++PLRGKILN S ++ +Q++ D+ Sbjct: 406 DDPAAGELFLVEGDSAGGSAKQARDRVNQAIMPLRGKILNTWEVDSAEVLASQEVHDISV 465 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALG S E+LRY KV I+ DAD DG HIA+LL F + L++ H+F+ PP Sbjct: 466 ALGIDPGSDNL-ENLRYHKVCILADADSDGLHIATLLCALFVRHFPALVKAGHVFVAMPP 524 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE KQ IL+ + KGK+ + RFKGLGEM QL+ET M + Sbjct: 525 LFRIDIGQDVYYALDESEKQGILDRIAAEKKKGKVNVQRFKGLGEMNPMQLRETTMAVDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I ++ + L ++ +R ++++ + + Sbjct: 585 RRLVQLVIEPGDDTHQIMDML---LAKKRSGDRKEWLETKGDMAE 626 >gi|215918876|ref|NP_819117.2| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 493] gi|206583761|gb|AAO89631.2| topoisomerase IV subunit B [Coxiella burnetii RSA 493] Length = 641 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 7 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 64 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RLR +++ RK LPGK Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 M+ + R L+R+ + S T+ ++ L+ K A +R +++++ + + Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638 >gi|161830424|ref|YP_001596021.1| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 331] gi|161762291|gb|ABX77933.1| DNA topoisomerase IV, B subunit [Coxiella burnetii RSA 331] Length = 636 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 2 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 59 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 118 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 176 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 177 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 230 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 288 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 289 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RLR +++ RK LPGK Sbjct: 349 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 406 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 407 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 466 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 467 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 525 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 526 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 M+ + R L+R+ + S T+ ++ L+ K A +R +++++ + + Sbjct: 586 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 633 >gi|238897993|ref|YP_002923673.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465751|gb|ACQ67525.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 632 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 248/650 (38%), Positives = 364/650 (56%), Gaps = 28/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y+ASSI +L GLEPVR RPGMY T+ +HL EVIDN++DE + G A I+V++ Sbjct: 4 NHYNASSIEVLTGLEPVRRRPGMY---TETTRPNHLAQEVIDNSVDEALEGKARRIDVTV 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V DNGRG+PV+ HP+ +E+IL+ LHAGGKF N Y SGGLHGVG+SV Sbjct: 61 YPDHSLKVSDNGRGMPVDLHPE-EQVPAIELILSRLHAGGKFSNKNYHFSGGLHGVGLSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L VTV R I+ F +G LE + GT + F PD F Sbjct: 120 VNALSLRLEVTVKRGGQIYRIAFEKGNKTEDLEIIGTCAQRDTGTCVHFWPDASFFDTPH 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E + + + GLK YL L Sbjct: 180 -FSISRLSHLLKAKAVLCPSLQIVFKNELNNTE-------QRWCYEDGLKHYLIETLGAS 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE---ITSYCNTILTDEGGTHESGLRVA 337 + F G ++ V+WA+ W E SY N I T +GGTH +GLR Sbjct: 232 VTLPKFPFLGSFSEET---KAVDWALCWLPEGGGELLTESYVNLIPTTQGGTHVNGLRQG 288 Query: 338 LTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ + +LSV +++P+F+GQTK + S V Sbjct: 289 LLDALREFCEFRQHLPRGVKLSGEDVWVGCAYLLSVKMQDPQFSGQTKERFSSRQCATFV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN EA +L E VI +++RLR ++V RK LPGKLADC Sbjct: 349 STVVKDAFSLWLNQNLSEAEQLAEMVINNAQQRLR--AAKKVVRKKLTSGPALPGKLADC 406 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S TELF+VEGDSAGGSAKQAR+R QAV+PL+GKILN S+++ ++++ D+ Sbjct: 407 SSQDVQQTELFLVEGDSAGGSAKQARDRQYQAVMPLKGKILNTWEVSSDEVLASKEVHDI 466 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S+ LRY K+ I+ DAD DG HIA+LL F++ L++ H+++ Sbjct: 467 SVAIGMDPESEDL-SALRYGKICILADADSDGLHIATLLCALFFRHFRSLVQAGHIYVAM 525 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA DEE K++IL + K +G + RFKGLGEM QL+ET +D N Sbjct: 526 PPLYRIDLGKEVFYALDEEEKKRILGDL-KQKRGTPNVQRFKGLGEMNPVQLRETTLDPN 584 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID-DV 684 R L+++ + + I+ L+ K +++R ++QE+ + ++ Sbjct: 585 TRRLVQLRVQDNEMDHTVA--IIDMLLAKKRSEDRRHWLQEKGDIAEVNL 632 >gi|118444670|ref|YP_878399.1| DNA topoisomerase IV subunit B [Clostridium novyi NT] gi|118135126|gb|ABK62170.1| DNA topoisomerase IV subunit B [Clostridium novyi NT] Length = 652 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 216/663 (32%), Positives = 342/663 (51%), Gaps = 34/663 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++YD + + LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N Sbjct: 5 QEKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNK 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + + L+ + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHG Sbjct: 65 VVLILNKDKSVTIMDNGRGIPTGIHP-VKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206 VG +VVNALS+ L V V ++ I Q+F S +K + GT+ Sbjct: 124 VGAAVVNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTERTGTK 183 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF+PD ++F F + + Q A+ + + +++ ++ Sbjct: 184 ITFKPDKEVFSTT-EFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKE-----YHSE 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GL ++ E++ I + + EK+ + + E + + + + I SY N I T Sbjct: 238 RGLLDFIDYLNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPT 297 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A+ ++ DDL IL V I P F GQ Sbjct: 298 TESGTHETGFKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQ 357 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + +A + ++ N AT+++ + + R + +K + +K Sbjct: 358 TKTKLGNNEAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKK 417 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 L GK++ C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 418 VGKGTAPLAGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+ Sbjct: 478 QRLENVLASEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYR 537 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL++ PPL+++ + +K S YA+ +E +E K I R+ Sbjct: 538 YMRSLITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGKGAL----IQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL +T ++ RTL ++ I + I+ LMG + R ++ + Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649 Query: 678 ASF 680 A F Sbjct: 650 AEF 652 >gi|91794568|ref|YP_564219.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217] gi|91716570|gb|ABE56496.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217] Length = 628 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 242/644 (37%), Positives = 349/644 (54%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++ Y + +I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TNQYTSDAIEVLNGLDPVKRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHATKIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V D+GRG+PV+ H + S +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHSDNSLEVTDDGRGMPVDIHQE-EGMSGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + +TV R ++ F G + L R GTR+ F PDP F Sbjct: 118 VVNALSKRVEITVRRDAQVYEMAFENGFKVEELTVTGTCGRRNTGTRVHFWPDPSYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + +L+ + ++KA L ++ ++ E E+ + GL YLQ ++ Sbjct: 178 N-YSLTKLIYLLRAKAVLCPGLRIKFTNK-------QNGETHEWCYESGLTDYLQEAVKG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 L+ E F G + N SY N I T GGTH +G R L Sbjct: 230 SVLLPPEPFVGSFKGDLEA-ADWAVTWLPEGGNSIFESYVNLIPTPLGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LSV +++P+FAGQTK KL S V Sbjct: 289 ESMREFCEFRNLVPRGLKLSPEDIWDKVSYVLSVKMQDPQFAGQTKEKLSSRQCAAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +RD F +L + A +L E I +++RL+ K +V RK LPGKL DCS Sbjct: 349 LVRDSFSLWLNSHIELAEQLAELCISSAQKRLKAAK--KVARKKVTSGPALPGKLTDCSG 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + ++ +Q++ D+ Sbjct: 407 QDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVHDISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+GC S +LRY K+ I+ DAD DG HIA+LL F + L+E+ H+++ PP Sbjct: 467 AIGCDPDSDDI-SELRYGKICILADADSDGLHIATLLCALFLKHYRVLVEKGHVYIAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G YA DE K IL+ + KGK++++RFKGLGEM QL+ET MD N Sbjct: 526 LFRIDIGKDVFYALDEGEKAGILDRITAEKKKGKVQVTRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ I++ L + L ++ +R +++ + Sbjct: 586 RRLVQLTIDEPLQTDAMMDML---LAKKRSSDRKLWLESKGDLA 626 >gi|227549441|ref|ZP_03979490.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291] gi|227078518|gb|EEI16481.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291] Length = 662 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 233/673 (34%), Positives = 351/673 (52%), Gaps = 63/673 (9%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL EV+DN++DE +AGYA+ ++V+L +G + V+DNGRGIPVE HP Sbjct: 1 MYIGSTGARGLHHLVWEVVDNSVDEAMAGYADRVDVTLLADGGIEVIDNGRGIPVEMHP- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS + + R + Q Sbjct: 60 -SGAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ +P ++ GT I F PD +IF FD + + Q A+L+ + Sbjct: 119 FTNAVPHEL--EQGGNARGTGTTIRFWPDAEIFETI-EFDYNTISRRLQEMAFLNKGLTI 175 Query: 244 CWSCDKEIAEK-------------------------------------------YGIPEK 260 ++ E+ +K Sbjct: 176 TLKDERVTDEELELEAIVEEGDTAALVDGDSFDDTVVEESTGDDAGAEVAPAVQKKREKK 235 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 +++P GL Y+ ++++ I + + + E A+ W + ++ Sbjct: 236 VTYHYPNGLIDYVDHLNKSKTPIHPSVIGFEAKGTDH---EAEVAMQWNNGFKESVHTFA 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREP 377 NTI T EGGTHE G R ALT + +YA + ++ ++ +D I+SV + +P Sbjct: 293 NTINTHEGGTHEEGFRAALTSIMNRYARDHKLLREKEPNLTGEDCREGLSAIVSVRVGDP 352 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + + + V+ A+ + + NP EA ++ + S+ R RK R+ Sbjct: 353 QFEGQTKTKLGNTEIKGFVQRAVNEHLSDWFDANPAEAKVIINKAVSSSQARQAARKARD 412 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 V RK+A LPGKLADC +ELFIVEGDSAGGSAKQ R+ QA+LPLRGKI Sbjct: 413 LVRRKSAGDMGGLPGKLADCRSKDPKASELFIVEGDSAGGSAKQGRDSMYQAILPLRGKI 472 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A +++ N ++ ++ ALG ++ LRY K+++M DADVDG HIA+LLL Sbjct: 473 LNVEKARMDRVLKNAEVQAIITALGTGIHDEFDISRLRYHKIVLMADADVDGQHIATLLL 532 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE-- 613 T ++ M +LIEQ H++L +PPL+++ + YA + + L E ++ G+ Sbjct: 533 TLLFRFMPELIEQGHVYLANPPLYKLKWAKGEPGYAFSDRERDAQLAEGQEAGRKINTDD 592 Query: 614 -ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 I R+KGLGEM S+L ET +D R L RV D+ + + + LMG R Sbjct: 593 GIQRYKGLGEMNPSELWETTLDPEHRILRRV----DVEDAQHADELFSILMGDDVAARRS 648 Query: 673 FIQERASFIDDVG 685 FI +A + + Sbjct: 649 FITRKAKDVRFLD 661 >gi|161833805|ref|YP_001598001.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS] gi|152206295|gb|ABS30605.1| DNA gyrase B subunit [Candidatus Sulcia muelleri GWSS] Length = 625 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 248/632 (39%), Positives = 365/632 (57%), Gaps = 23/632 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG K LHH+ EVI+N++DE ++G+ + I V++ + +TV+DNGRGIPVE H K Sbjct: 1 MYIGDIGIKGLHHMVYEVINNSIDESLSGFCDKIYVTIHKDNSITVLDNGRGIPVELHEK 60 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S LE+++T + AGGKFDN++Y+ SGGLHGVGIS VNALS +L + R I+ QK Sbjct: 61 -EGISALELVMTKIGAGGKFDNNSYKFSGGLHGVGISCVNALSSKLIAKIFRNGKIYVQK 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 +SRG+P+S LE +N+RGT+ITF+ D IF ++ + L + ++L+ + Sbjct: 120 YSRGVPISKLEIIGDSKNQRGTQITFKADKFIFKKI-SYNYSILKNRLRELSFLNKGLSI 178 Query: 244 CWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------KKG 296 +++ K G +K F+ G+K +L +N+ I + K+ KK Sbjct: 179 SLLDERK-IYKTGFFKKNHFFSKKGIKEFLMFIEKNKESIIENYKSKKSRIKDFFYLKKN 237 Query: 297 THRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI 355 +E + + +I SY N I T EGGTH SGL+ ALT+ KKY + + + Sbjct: 238 KKNINLELVMRYNSSYKEKIFSYVNNINTSEGGTHISGLKKALTKTFKKYFSKNRRFKKL 297 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 I + IL++ I P+F GQTK KLV+ + VE ++ F+ +L +NP+ Sbjct: 298 KISGGYFIEGLTAILTIKIINPKFEGQTKNKLVNYEIIGLVEKIVKKKFNSFLEKNPLYL 357 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K+L V ++ R ++ RE+ + +K LP KLADCS + EL++VEGDSAG Sbjct: 358 KKILNKVFLSAKARQAYKRVRELIKTKTSKKNNLPIKLADCSSKNPNLCELYLVEGDSAG 417 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR- 534 G+AKQ R R QAVLPLRGKILNV + KI N++I ++ ALG + L Sbjct: 418 GTAKQGRERKFQAVLPLRGKILNVEKSIKNKIFENEEIKNIFLALGVFFFKKKNIIKLNI 477 Query: 535 ----YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 Y+K+IIMTDAD+DG+HI++L+LTFF++ M LIE+ ++++ +PPLF I K +Y Sbjct: 478 KKIRYKKIIIMTDADIDGSHISTLVLTFFFRYMRILIEKGYIYIATPPLFLIKNYKKKIY 537 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 A + + ++KIL KK I I R+KGLGEM A QL ET M+ RTL +V I + Sbjct: 538 AWNYKEREKIL---KKSLLKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTI----H 590 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFID 682 ++K + LMG R +FI+ A F Sbjct: 591 NIKIANKIFSMLMGENVLPRKQFIETNALFAK 622 >gi|209364253|ref|YP_001425349.2| DNA topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111] gi|207082186|gb|ABS78278.2| topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111] Length = 641 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 245/651 (37%), Positives = 364/651 (55%), Gaps = 22/651 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 7 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 64 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RLR +++ RK LPGK Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 M+ + R L+R+ + + + ++K +A +R +++++ + + Sbjct: 591 TMNPDTRHLVRLTVKSKDKTEQLLDMLLDK---KRAADRRDWLEKKGNLAE 638 >gi|160871833|ref|ZP_02061965.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli] gi|159120632|gb|EDP45970.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli] Length = 630 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 360/645 (55%), Gaps = 22/645 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 +S+ Y A +I +L GL+PV+ RPGMY +D +HL EVIDN++DE IAGYA Sbjct: 2 TKSSPKKYTAEAIEVLSGLDPVKRRPGMY---SDTSRPNHLAQEVIDNSVDEAIAGYARH 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + L V D+GRG+PV+ HP+ + +E+ILT LHAGGKF++ Y SGGLHG Sbjct: 59 IDVVLHVDNSLEVSDDGRGMPVDVHPE-EKVTGVELILTRLHAGGKFNHKNYRFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKI 215 VG+SVVNALS L VT+ R I+ +F +G S L+K K+ GT + F PD Sbjct: 118 VGVSVVNALSHRLQVTIRRDGFIYQMQFEQGNKKSNLKKIGKMETATSGTSLRFWPDK-R 176 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 + D F +RL ++KA L + ++ +K+++++ G+ +YL+ Sbjct: 177 YFDNEKFSVSRLKHSLRAKAVLCPGLTVRFTDK-------QANKKDKWFYVDGVLSYLKD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 L I E F G + + + SY N + T +GGTH +GLR Sbjct: 230 SLRQVERIPKEPFHGHFATE-IEEVDWALCWLLESGDGLMESYVNLVPTVQGGTHVNGLR 288 Query: 336 VALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L ++++ E R + + +D+ ILSV + EP+F+GQTK +L S + Sbjct: 289 TGLLEAMREFCELRDLLPRGLKLAPEDVWEGCHYILSVKLLEPQFSGQTKERLTSRQSAL 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V ++D F +L Q+ EA L E +I +++R R + V RK + LPGKLA Sbjct: 349 FVSGVIKDAFSLWLNQHVAEAENLAELMIAHAQKRQR---SKHVARKKVLGGAVLPGKLA 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC++ + TELF+VEGDSAGGSAKQAR+R+ QA++PLRGKILN S + +Q+I Sbjct: 406 DCTETDLNRTELFLVEGDSAGGSAKQARDRAFQAIMPLRGKILNTWEVTSNHVLGSQEIH 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ A+G S+ LRY K+ I+ DAD DG HIA+LL F + LIE H+++ Sbjct: 466 DIAVAIGIDPGSKDL-SGLRYGKICILADADSDGLHIATLLCGLFLKHFSALIEAGHIYI 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI +G + YA D+E KQ IL+ KGKI I RFKGLGEM QL+ET M Sbjct: 525 AMPPLYRIDRGKEVFYALDDEEKQIILDRLIAENKGKISIQRFKGLGEMNPMQLRETTMA 584 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 + R L+++ I+ + L ++ +R +++++ Sbjct: 585 PDTRRLVQLIIDHPQKTFSLMDLL---LAKKRSGDRKIWLEKKGD 626 >gi|145632919|ref|ZP_01788652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655] gi|144986575|gb|EDJ93141.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655] Length = 632 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A+ IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDTHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|212213404|ref|YP_002304340.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212] gi|212011814|gb|ACJ19195.1| topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212] Length = 641 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 248/652 (38%), Positives = 366/652 (56%), Gaps = 24/652 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 7 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 64 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 182 SHYFDSVKFWVSALKHTMRAKAVLCPGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RLR +++ RK LPGK Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRM--SKKIERKKVTTGPALPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQT 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 M+ + R L+R+ + S T+ ++ L+ K A +R +++++ + + Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638 >gi|119946960|ref|YP_944640.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37] gi|119865564|gb|ABM05041.1| DNA topoisomerase IV subunit B [Psychromonas ingrahamii 37] Length = 629 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 237/644 (36%), Positives = 344/644 (53%), Gaps = 22/644 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 SD Y++ SI +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 SDQYNSDSIEVLNGLDPVRHRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHAATIQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ S +E+I LHAGGKF YEISGGLHGVGIS Sbjct: 59 LHEDQSLEVIDDGRGMPVDIHPE-ERISGVELIFCKLHAGGKFSGKNYEISGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V++ R ++ F G + L + GT + F PDP F Sbjct: 118 VVNALSKRVDVSIRRDGQVYEIAFENGEKVEELHVTGVCGKRNTGTTVHFHPDPAYFDSA 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RLL + ++KA L + + ++ + GL YL + + Sbjct: 178 R-FSVSRLLHLLKAKAVLCAGLTIKFKDK-------VNKNDYQWCYQDGLNDYLLEAVAD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 L+ + FTGK K SY N I T +GGTH +G R L Sbjct: 230 NELLPPQPFTGKFSAKSET-AEWSVVWLPDGGPSLSESYVNLIPTVQGGTHVNGFRQGLL 288 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ ++ R + + +D+ ILSV I+EP+FAGQTK +L S V Sbjct: 289 DAMREFCDIRNLLPRGLKLSPEDIWDRCAYILSVKIKEPQFAGQTKERLSSRQCVAFVSG 348 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + EA L ++ I ++ R R+ +++ RK + LPGKL DCS Sbjct: 349 IVKDAFSLWLNAHVNEAELLADFCINNAQTRTRKT--KKIARKKITQGPALPGKLTDCST 406 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+F+VEGDSAGGSAKQAR+R QA++PLRGKI N S+ I N+++I ++ Sbjct: 407 QETMRGEIFLVEGDSAGGSAKQARDREFQAIMPLRGKIKNTWEDDSDIILNSEEIHNISV 466 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S LRY K+ I+ DAD DG HIA+L+ F + +++ HLF+ PP Sbjct: 467 AIGIDPASSDL-SGLRYGKICILADADSDGLHIATLICALFVRHFRAVVDAGHLFVAMPP 525 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G + YA DE K +L+ + K GK+ + RFKGLGEM QL+ET MD N Sbjct: 526 LYRIDIGKEVYYALDEAEKDGVLDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMDPNT 585 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ L+ L +A +R +++++ Sbjct: 586 RRLVQLTTEGAEEMLEMMDML---LAKKRAGDRKVWLEDKGDMA 626 >gi|145634903|ref|ZP_01790610.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA] gi|145267769|gb|EDK07766.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA] Length = 632 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 354/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++K L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKGVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|301170268|emb|CBW29873.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae 10810] Length = 632 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHTDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R I+ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|318059563|ref|ZP_07978286.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actG] gi|318075444|ref|ZP_07982776.1| DNA topoisomerase IV subunit B [Streptomyces sp. SA3_actF] Length = 707 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 234/687 (34%), Positives = 344/687 (50%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + I+V+L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206 VNALS L V V R ++ + F RG+P + K + + GTR Sbjct: 140 VNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + + D +IF A L + + A+L + + + E E E F + Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVHDEYGLGEGGSKGE-ESFRYD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + ++++ +G+ + V+ A+ W Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318 Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 + S+ N I T +GGTH +G A+TR + + R DD + Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V N + +L +A V+++ Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY K+I++ Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618 Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ +L+ +K+ + K I R+KGLGEM A QL ET MD RTL R+ +N L Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R +FI A+ +D Sbjct: 675 EQVFDLLMGNEVAPRKEFITNSAATLD 701 >gi|302522323|ref|ZP_07274665.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] gi|302431218|gb|EFL03034.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] Length = 707 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 234/687 (34%), Positives = 344/687 (50%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + I+V+L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HEDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKVRNKRGTR 206 VNALS L V V R ++ + F RG+P + K + + GTR Sbjct: 140 VNALSARLDVEVDRGGSVHTTSFRRGVPGQFKGAGPEGAFEPTTGLRKTKRIPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + + D +IF A L + + A+L + + + E E E F + Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGSKGE-ESFRYD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + ++++ +G+ + V+ A+ W Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEYGQMTPTEVVRDLGVDVALRWGT 318 Query: 311 ENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 + S+ N I T +GGTH +G A+TR + + R DD + Sbjct: 319 GYETSVRSFVNIIATPKGGTHVAGFERAVTRTVNDVLRSAKLLRVAEDDVVKDDALEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V N + +L +A V+++ Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKIV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY K+I++ Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618 Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ +L+ +K+ + K I R+KGLGEM A QL ET MD RTL R+ +N L Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R +FI A+ +D Sbjct: 675 EQVFDLLMGNEVAPRKEFITNSAATLD 701 >gi|68249955|ref|YP_249067.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 86-028NP] gi|148826055|ref|YP_001290808.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE] gi|68058154|gb|AAX88407.1| topoisomerase IV subunit B [Haemophilus influenzae 86-028NP] gi|148716215|gb|ABQ98425.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE] Length = 632 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A+ IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDTHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R I+ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|21224166|ref|NP_629945.1| DNA topoisomerase IV subunit B [Streptomyces coelicolor A3(2)] gi|256784752|ref|ZP_05523183.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24] gi|289768639|ref|ZP_06528017.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24] gi|3036887|emb|CAA18520.1| putative DNA gyrase subunit B [Streptomyces coelicolor A3(2)] gi|289698838|gb|EFD66267.1| DNA topoisomerase IV subunit B [Streptomyces lividans TK24] Length = 707 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 235/706 (33%), Positives = 346/706 (49%), Gaps = 52/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLAGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDEALGGYCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199 F Y SGGLHGVG SVVNALS L + V + F RG+P + + Sbjct: 121 FGGGAYAASGGLHGVGASVVNALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFE 180 Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 +++RGTR+ + D +IF A L + + A+L + Sbjct: 181 AGSGLRKVKKVPKSRRGTRVRYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + + E E F F GG+ + + +R + F+G+ Sbjct: 241 EFGLGDGGSKGE-ESFRFDGGISEFCEFLAGDRPVCDVLRFSGQGSFKETVPVLDEDGQM 299 Query: 294 --KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W S+ N I T +GGTH +G A+ + + + + Sbjct: 300 TPSEVTRDLGVDVALRWGTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKK 359 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 360 MLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFL 419 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 +A + V+E+ R+ + RKTA+ LP KLADC + Sbjct: 420 TSTKRDAAQQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDR 479 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG 539 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 540 SGRTFDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIE 599 Query: 583 ----TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + + K++E K+ + K I R+KGLGEM A QL ET MD Sbjct: 600 LVQPKKGQDKYVYTYSDRELRDKLMEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPR 659 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +RTL R+ + L + + LMG R +FI A+ +D Sbjct: 660 RRTLRRINLTD----LDSAEQVFDLLMGNDVAPRKEFISSSAATLD 701 >gi|70734049|ref|YP_257689.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf-5] gi|68348348|gb|AAY95954.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens Pf-5] Length = 634 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 240/653 (36%), Positives = 365/653 (55%), Gaps = 26/653 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 IQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGIELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS+++ V V R + F+ G + LE V + GT + F PDPK Sbjct: 118 VGISVVNALSNQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 178 FDSP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLVD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + +E F G + V+WA+ W E + SY N I T +GGTH +G Sbjct: 230 AVSEFERLPAEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E R + + +D+ +LS+ +++ +F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGLKLAPEDVWERIAFVLSMKMQDAQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L NP +L E I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNANPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G ++ LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAEDM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 584 TMDPNTRRLVQLTLDDVEATAEIMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|229825735|ref|ZP_04451804.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC 49176] gi|229790298|gb|EEP26412.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC 49176] Length = 677 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 244/694 (35%), Positives = 355/694 (51%), Gaps = 73/694 (10%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S+NYD S I ILEGLE VR RPGMYIG T + LHHL E++DN +DE +AG+ + I++ Sbjct: 2 SENYDGSQIVILEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCSQIDLI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G +T+ D GRG+PV+ HP T ++ T LHAGGKF Y++SGGLHGVG S Sbjct: 62 LRNDGGITIRDYGRGVPVDIHP-TKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRG-------IPLSPLEKKEKVRNKRGTRITFRPDP 213 VVNALS ++ V + R ++ ++ G + K ++ +GT +TF PD Sbjct: 121 VVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPDD 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF F A + K + A+L+ +K + + EK + G+K+Y+ Sbjct: 181 TIFET-IEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEK-------DGIKSYV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +I E+ + E VE A + +I +YCN I +GGT + Sbjct: 233 KYINRETEVIHDEVVYVEGESGDI---EVEVAFQYTNGFSEQINAYCNRINVVDGGTLVT 289 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR + +YA + + D+ V I+S+ +P+F GQTKTKL + Sbjct: 290 GFKTALTRVMNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNT 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA+ VE + Y +N +L+ + R K R ++ + Sbjct: 350 DAKTAVEEVVSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARN-AVLKSLNDFDVK 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 KLA CS A E+++VEGDSAGG+ K ARNR QAVLPLRGKILNV A EKI N Sbjct: 409 SKLASCSSKNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ GC ++ LRY+K+II+TDADVDGAHI++LLLTFFY+ M DLI++ Sbjct: 469 NEIKSMIATFGCGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEG 528 Query: 571 HLFLISPPLFRIT---QGTKSV-------------------------------------- 589 ++ PPL+++ G K + Sbjct: 529 KIYRGLPPLYKVDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSE 588 Query: 590 YAHDEEHKQKILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 Y ++ LE+FKK+ KI EI R+KGLGEM ASQL ET +D R+L R++I+ Sbjct: 589 YIFNDYE----LEKFKKNKNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDT 644 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + + + LM + R +FI A + Sbjct: 645 V----EADEVTSLLMSSVVPPRREFIMNEAKYAK 674 >gi|315604341|ref|ZP_07879407.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] gi|315314047|gb|EFU62098.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] Length = 706 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 233/702 (33%), Positives = 341/702 (48%), Gaps = 63/702 (8%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + +Y+A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE + GY + Sbjct: 6 TPTDASDYNARHLSVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGYCDT 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + +V DNGRGIPV+ P + +E++ T LHAGGKF +Y SGGLHG Sbjct: 66 IDVRLHPDHSASVADNGRGIPVDIVP-GQGLTGVEVVYTKLHAGGKFGGGSYAASGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------------EKK 196 VG SVVNALS L V V R F RG P + Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHEMCFRRGEPGEFDDSKQRTPNSPFRPFVDGSTLKTV 184 Query: 197 EKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 KV+ + GTR+ F D +IF GF LL + A+L + ++ E Sbjct: 185 GKVKKSQTGTRVRFWADFQIFPATEGFSWENLLARARQTAFLVPGLTINCYDERGDEEIT 244 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTH 298 E F F GG+ + + ++ + TG + Sbjct: 245 -----ESFRFDGGVVDFANWLANDGAVTDTWHITGSGTYSETVQVLDPESGHLRATEVER 299 Query: 299 RGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----- 352 V+ A+ W S+ N I T +GGTH +G A+ + ++ + K Sbjct: 300 TCDVDVALRWGIGYDTNLRSFVNIIATPKGGTHVAGFEQAVLKTLRAAIDKNARKLKVGA 359 Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 + DD+ +++V EP+F GQTK L + + V + D + Sbjct: 360 KDGRPEKDDVQAGMTAVVTVRFPEPQFEGQTKETLGTPQIRTVVNRVVTDWLKAKFASSK 419 Query: 413 IEATKL----LEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTELF 467 + + +E V+ + R+ R +E++R K A+ LP KLADC TELF Sbjct: 420 RDDKQQTSLLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLEDVAETELF 479 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSA G+AK ARN QA+ P+RGKILNV A + + N + +++Q +G + Sbjct: 480 IVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSGRT 539 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582 + RY KVI+MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI Sbjct: 540 FDLSQARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVAGK 599 Query: 583 -TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTL 640 + + VY + E+ + L ++ G+ K I R+KGLGEM A QL ET MD R+L Sbjct: 600 GRKKREYVYTYSEDELHRKLASLRRSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHRSL 659 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ + + +L+ +D LMG+ R +FI E ++ +D Sbjct: 660 RRITLADE-EALRQAEDVFELLMGSTVGPRREFIVEESAGLD 700 >gi|218281306|ref|ZP_03487794.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989] gi|218217491|gb|EEC91029.1| hypothetical protein EUBIFOR_00359 [Eubacterium biforme DSM 3989] Length = 641 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 242/650 (37%), Positives = 352/650 (54%), Gaps = 30/650 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 YD SSI ILEGL+ VR RPGMYIG TD K LHHL E++DNA+DE + GY N I + Sbjct: 2 PKQQYDESSIVILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNAIDEALNGYGNEIAI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVG 158 +L+ +G +TV D+GRG+PV H STL++I T LHAGGKF + Y +GGLHGVG Sbjct: 62 TLEKDGSVTVEDHGRGMPVGKHK--SGVSTLQVIFTILHAGGKFTSHGGYTSAGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNAL VTV I+S F G +K N+ G+ +TF+PDP IF Sbjct: 120 ASVVNALCTWCKVTVHDGKDIWSMTFEDGGSKIGKLEKVGKTNRTGSTVTFKPDPTIFKT 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F + + + Q A+L +K ++ ++ + + GLK ++ + Sbjct: 180 VH-FSYSTICERAQEDAFLLKGLKMIVRDKRK------EEKEVIYQYEDGLKAFIDEVNQ 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + + I + +++ VE + +E I S+ N + T +GG+HE+G + A Sbjct: 233 DHTPMHDSISF----RGESNQIVVEGCFQYTDEYQENIFSFTNMVRTRDGGSHETGAKQA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQ 393 T+ +YA ++ +D+ ++++ I E +F GQTK KL S +A+ Sbjct: 289 FTKVFNEYARKNGFLKEKDKGFDGNDVREGLTLVINLTIPEDYLQFEGQTKEKLGSPEAK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LP 450 E + + ++L +N A L+ +I+ ++ R RK R R + L Sbjct: 349 PATETVVSENLRYFLEENKEIANALVRKIIKAAQARNAARKARADIRNGKGKNRSERVLS 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLA A EL++VEGDSAGGSAKQ R+ QA+LPLRGK+LN A E I N Sbjct: 409 GKLASAQSKDARRKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASLEAIEKN 468 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ ++ ALG + + ED Y KVIIMTDAD DGAHI +LLLTFFY+ M +LI + Sbjct: 469 EELNTIIHALGAGVGANFTAEDSNYYKVIIMTDADDDGAHIQNLLLTFFYRYMRELITHE 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 L++ PPL+RI +G K Y + E + E K I+R+KGLGEM A+QL + Sbjct: 529 MLYIALPPLYRIAKGGKEYYLYTNEELDEKKAELKN----GYTITRYKGLGEMNATQLWD 584 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 T M+ RTLL V I + + + +LMG KA+ R +I++ F Sbjct: 585 TTMNPESRTLLCVTIENAMM----AEKRVTELMGDKAELRRNWIEDNVVF 630 >gi|302542033|ref|ZP_07294375.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459651|gb|EFL22744.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653] Length = 707 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 239/687 (34%), Positives = 346/687 (50%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + IEV L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDRIEVHL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF Y SGGLHGVG SV Sbjct: 81 HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206 VNALS L V V S F RG+P E + + GTR Sbjct: 140 VNALSSRLDVEVDLHGKTHSISFRRGVPGIFTESGPDAPFDPSSGILKGKRVPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I + D +IF A L + A+L + ++ + P +EEF + Sbjct: 200 IRYWSDRQIFLKDAKLSLETLHARARQTAFLVPGLTLVVRDER-ALDGREGPVEEEFRYD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + +++++ +G+ + T V+ A+ W Sbjct: 259 GGISEFCEYLAQDKAVCDVMRLSGQGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGT 318 Query: 311 ENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 T S+ N I T +GGTH SG ++T+ + + ++ R DD+M Sbjct: 319 GYDATTKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSSKLLRVAEDDVVKDDVMEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V N + +L +A + V+E+ Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKAFLTSAKRDAKQQARAVLEKIV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY KVI + Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGSIIQVIGAGSGRTFDIDQARYGKVIFLA 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++EQ +F PPL R+ +G K +Y + + Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQEKYIYTYSDNE 618 Query: 597 KQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + ++ G + K I R+KGLGEM A QL ET MD RTL R+ I+ L+ Sbjct: 619 LRETLLDLERRGVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAA 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + + LMG + R +FI A+ +D Sbjct: 675 EQAFHLLMGNEVAPRKEFITNSAATLD 701 >gi|320538929|ref|ZP_08038605.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson] gi|320031089|gb|EFW13092.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson] Length = 631 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 243/645 (37%), Positives = 359/645 (55%), Gaps = 26/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y+A +I +L GLEP+R RPGMY TD +HL EVIDN++DE +A +A IEV L Sbjct: 5 SYNADAIEVLSGLEPIRRRPGMY---TDTTRPNHLGQEVIDNSVDEALANHAKRIEVILH 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 62 ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + V V R ++ F G + L + GT + F PD + F D Sbjct: 121 NALSKRVEVNVKRDGNVYGIAFENGDKVQDLTVTGTCGKRNTGTSVHFWPD-EQFFDSPR 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 180 FSVSRLSHLLKAKAVLCPGVEIDFIDQVNNTE-------QRWCYQDGLTDYLMEAVNGLM 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + + F V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 233 TLPTAPFVRNFAGDTE---AVDWALLWLPEAGELLTESYVNLIPTMQGGTHVNGLRQGLL 289 Query: 340 RGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 290 DAMREFCEFRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L QN A +L E I ++ RLR ++V RK LPGKLADC+ Sbjct: 350 VVKDAFSLWLNQNVQAAEQLAELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCTS 407 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 408 QDLSMTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 467 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G ++ LRY K+ I+ DAD DG HIA+LL F + L++ H+++ PP Sbjct: 468 AIGIDPDNEDL-SQLRYGKICILADADSDGLHIATLLCALFVRHFSSLVKGGHVYVAMPP 526 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + Y DEE K +LE+ K+ KGK + RFKGLGEM QL+ET +D N R Sbjct: 527 LYRIDLGKEVFYVLDEEEKAGVLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTR 585 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 L+++ +N +++ T ++ L+ K +++R ++Q++ + Sbjct: 586 RLVQLTVN--ADNVVQTLAVMDMLLAKKRSEDRRNWLQDKGDMAE 628 >gi|7387745|sp|Q9ZAQ6|GYRB_MYCAT RecName: Full=DNA gyrase subunit B gi|4099106|gb|AAD09234.1| gyrase B [Mycoplasma arthritidis] Length = 638 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 248/620 (40%), Positives = 345/620 (55%), Gaps = 21/620 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Q Y A +I+ LEGLE VR RPGMYIG + LHHL E++DN++DE +AG+A Sbjct: 1 MSKQEEISKYGAKNIQFLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFA 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV L N + V+DNGRG+PV+ HP KS +E ILT L+AGGKFD++ Y++SGGL Sbjct: 61 TNIEVKLHPNNEIEVIDNGRGMPVDIHP-TTKKSAVETILTVLYAGGKFDSTNYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKF-SRGIPLSPLEKKEKV-RNKRGTRITFRPD 212 HGVG+SVVNALSD V V R + QK+ + G P+ PLE +V +++ GTRI F PD Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +I FD ++ + AYL+ + E F F GG+ Y Sbjct: 180 YQIMDKV-AFDFGTIIDHAKQIAYLNKGLSIS-------CEDITKNTIRNFCFEGGIIDY 231 Query: 273 LQTKLENRSLISSEIFTGKT----EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + + +I +I + + V AI + E I SY N I T EG Sbjct: 232 VSELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEG 291 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE G ALTR KYAE + + + +D V I+S+ +P F GQTK Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT-AI 444 KL + DA+ + + + Y+ +NP A ++E + RL RE +RK Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS A ELFIVEG+SAGGSAK R+R+ QA+LPLRGKI+N Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 + +N+++ ++ ALG ++ L+Y K++IMTDADVDGAHIA+LLLTFFY+ M Sbjct: 472 TSVMSNKEVSSMIHALGTGITDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMR 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 LIE +++ PPL++I+ + YA+++ K++IL + I I R+KGLGEM Sbjct: 532 PLIEYGFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKL--EDSKNISIQRYKGLGEMD 589 Query: 625 ASQLKETAMDANKRTLLRVE 644 QL ET M+ R + + Sbjct: 590 PEQLWETTMNPATRKYCKFK 609 >gi|325578618|ref|ZP_08148718.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus parainfluenzae ATCC 33392] gi|325159854|gb|EGC71984.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus parainfluenzae ATCC 33392] Length = 632 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKVEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHADQSLEVIDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G+ + LE + + D Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + E + + + GL YL + Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE-------DVWCYQDGLSDYLTEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKGSTE---AVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + +Y E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LNAMTEYCEFRNKLPRGVKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVA 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A +L E I ++ RL ++V RK + LPGKLADC+ Sbjct: 348 GVLKDAFSLWLNQNVQDADRLAEMAISSAQRRL--NAAKKVVRKKLVSGPALPGKLADCA 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+++ + +I D+ Sbjct: 406 SQNLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG ++ LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K+ ILE K KG + + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLGKEVFYALDENEKEAILERLKGK-KGTLNVQRFKGLGEMDPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + + T + ++ L+ K A++R ++Q +D Sbjct: 584 RRLVQLTYDLEEDQGAATLELMDMLLAKKRAEDRKNWLQTNGDQVD 629 >gi|242237464|ref|YP_002985645.1| DNA gyrase subunit B [Dickeya dadantii Ech703] gi|242129521|gb|ACS83823.1| DNA gyrase, B subunit [Dickeya dadantii Ech703] Length = 803 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q++ G P +PL GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKLHRQEYKHGEPQAPLAVVGDAS-TTGTTVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + F++ GG+K ++ N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ENKADHFHYEGGIKAFVDYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F EK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPQVFYFSAEKDGI---GVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + D YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESLMNDRLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALEWLTKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAM----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|110835355|ref|YP_694214.1| DNA topoisomerase IV subunit B [Alcanivorax borkumensis SK2] gi|110648466|emb|CAL17942.1| DNA topoisomerase IV, B subunit [Alcanivorax borkumensis SK2] Length = 628 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 245/647 (37%), Positives = 369/647 (57%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY + +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V+ Sbjct: 2 TNNYTSENIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKSIKVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP K +E+IL+TLH+GGKF N+ Y+ SGGLHGVG+S Sbjct: 59 LFKDGGVEVEDDGRGMPVDMHP-VQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS +L + V R + +F G S LE + V + GT + F PD + F Sbjct: 118 VVNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDSQYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +RL + ++KA L + + E + + F GL YL Sbjct: 178 -KISVSRLKHLLRAKAVLCPGLLVTL-------DNQQTGESDAWQFDDGLIEYLLESSTG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + +E F G + V+WA+ W E E +Y N I T +GGTH +GLR Sbjct: 230 WERVPAEPFNGAMSAETE---AVDWAVTWLPEGGELVQEAYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ A +LSV +++P+FAGQTK +L S V Sbjct: 287 LLEAMREFCEFRNLLPRGVKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ EA KL + I +++RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQHTDEAEKLADLCINNAQKRLR--AAKKVTRKKVTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + +E+F+VEGDSAGGSAKQAR+R QA++PLRGKI+N S ++ +Q+I D+ Sbjct: 405 TSDDPSQSEIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+L+ F + L++Q H+F+ Sbjct: 465 AVALGIEPGSDDL-SSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKQGHVFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA D++ + +L+ K K GK+ ++RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKEVYYALDKQERDGVLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMAR 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L+R++++ D + + ++K +A +R +++E+ + + Sbjct: 584 DTRRLVRLDVSTDDGTHQLMDMLLSK---KRASDRKVWLEEKGNLAE 627 >gi|326329136|ref|ZP_08195464.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1] gi|325953023|gb|EGD45035.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1] Length = 687 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 245/681 (35%), Positives = 368/681 (54%), Gaps = 45/681 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDAS+I++LEGLE VR RPGMYIG T + LHHL E++DNA+DE +AGY + I+V+L Sbjct: 12 YDASAIQVLEGLEAVRKRPGMYIGSTGARGLHHLIWEIVDNAVDEALAGYCDTIKVTLRE 71 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G+++V DNGRGIP + + LT LHAGGKF Y++SGGLHGVG SVVN Sbjct: 72 DGWVSVADNGRGIPTDT-AAGQEIPAATLALTVLHAGGKFGGGGYKVSGGLHGVGSSVVN 130 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDKAG 221 ALS LH+ + + ++ Q+F+RG+P L + ++ + GT I++ +IF Sbjct: 131 ALSTNLHMEIKNRGRLWEQEFTRGVPDYDLREVRELEEGERTGTTISWNASAEIFES-TD 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDK--------------------EIAEKYGIPEKE 261 ++ + + A+L+ ++ ++ E +G E Sbjct: 190 YNLETISSHFRETAFLNKGLRIELRDERPQASAIAEAVEDGTIESDTDSADELHGTGNGE 249 Query: 262 E-----FYFPGGLKTYLQTKLENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWC--EENP 313 FY+ GL Y+ + ++ +SS I +T+ K + +VE A+ W N Sbjct: 250 RVLEQSFYYERGLADYVDHLNKRKTPVSSIIAFEAETDDKAPNPMSVEIAMQWQASSYNE 309 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + ++ NT+ T GGTHE G R ALT I ++ E K+ + DD+ I+S Sbjct: 310 SVHTFANTVNTPGGGTHEEGFRAALTTLINRWGEEWGLIKKKEDRLTGDDIREGLTAIIS 369 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V I EP+F GQTK KL + + + V+ A+ D +L QNP E +++ + + R+ Sbjct: 370 VKISEPQFEGQTKDKLGNTEVKGFVQGAVNDQLGAWLEQNPAEGKEVIRKSMAAASARIA 429 Query: 432 RRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R+ NRK LPGKLADC E+FIVEGDSAGGSAK R+ QA+ Sbjct: 430 ARKARDLARNRKGIGGGGGLPGKLADCQSTNPEECEIFIVEGDSAGGSAKSGRDPRIQAI 489 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A +K+ NQ++ ++ ALG + LRY K+++M DADVDG Sbjct: 490 LPIRGKILNVEKARIDKVLANQEVQSIISALGTGVHDDFDINRLRYHKIVMMADADVDGH 549 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKH 607 HI +LLLT ++ M LIEQ +++L PPL+R+ + + + + + ++ + + Sbjct: 550 HINTLLLTLLFRFMKPLIEQGYVYLAQPPLYRLRWNKPAEHEFVYSDAERDALMRDGLEQ 609 Query: 608 GKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664 GK + + R+KGLGEM A +L ET MD ++R LL+V + + + LMG Sbjct: 610 GKKLPKENPVQRYKGLGEMNADELWETTMDPSQRLLLQVTLED----AAHADEIFSILMG 665 Query: 665 TKADERFKFIQERASFIDDVG 685 ER FIQ A + + Sbjct: 666 EDVAERRSFIQRNAKDVRFLD 686 >gi|104783895|ref|YP_610393.1| DNA topoisomerase IV subunit B [Pseudomonas entomophila L48] gi|95112882|emb|CAK17610.1| topoisomerase IV subunit B [Pseudomonas entomophila L48] Length = 634 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 249/655 (38%), Positives = 365/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSSQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFTPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + G EK E+++ GL++YL Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLSISFEDK-------GTGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVSEFPRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERISFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRVTQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY KV I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGATDL-SQLRYGKVCILADADSDGLHIATLLCALFVQHFRPLVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDVQGTTEIMDML---LAKKRAGDRKNWLETKGNLAEVL 633 >gi|301156477|emb|CBW15948.1| DNA topoisomerase IV, subunit B [Haemophilus parainfluenzae T3T1] Length = 632 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 355/646 (54%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A +EV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKVEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHADQSLEVIDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G+ + LE + + D Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGVKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSK 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + E + + + GL YL + Sbjct: 178 NFSVSRLRHLLRAKAVLCSGLEIKFVDKVNNTE-------DVWCYQDGLSDYLTEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKGSTE---AVSWALLWLPEGGELIAESYVNLIPTVQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + +Y E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LNAMTEYCEFRNKLPRGVKLTADDIWDRCAYILSLKMQDAQFAGQTKERLSSRQSAVFVA 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A +L E I ++ RL ++V RK + LPGKLADC+ Sbjct: 348 GVLKDAFSLWLNQNVQDADRLAEMAISSAQRRL--NAAKKVVRKKLVSGPALPGKLADCA 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+++ + +I D+ Sbjct: 406 SQNLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVASDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG ++ LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDNEDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K+ ILE K KG + + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLGKEVFYALDESEKEAILERLKGK-KGTLNVQRFKGLGEMDPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + +T + ++ L+ K A++R ++Q +D Sbjct: 584 RRLVQLTYELGEDQGAETLELMDMLLAKKRAEDRKNWLQTNGDQVD 629 >gi|77456727|ref|YP_346232.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1] gi|77380730|gb|ABA72243.1| topoisomerase IV subunit B [Pseudomonas fluorescens Pf0-1] Length = 635 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 367/654 (56%), Gaps = 27/654 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I+V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 IQVILHADHSLEVCDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS ++ V V R + F+ G + L+ V + GT + F PDPK Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGFKATDLQVIGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + G EK E+++ GL++YL Sbjct: 178 FDSP-KFSISRLKHVLKAKAVLCPGLLISFEDK-------GTGEKVEWHYEDGLRSYLVD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + F G + VEWA+ W E SY N I T++GGTH +G Sbjct: 230 AVSEFERLPDAPFCGNL---AGTKEAVEWALLWLPEGGTSVTESYVNLIPTEQGGTHVNG 286 Query: 334 LRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E + R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L NP L E I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNANPETGLALAELAISNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G ++ LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAEDM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 MD N R L+++ + +T + ++ L+ K A +R +++ + + + + Sbjct: 584 TMDPNTRRLVQLTL---GGDFAETSEMMDMLLAKKRAGDRKTWLESKGNLAEVL 634 >gi|254427031|ref|ZP_05040738.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881] gi|196193200|gb|EDX88159.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881] Length = 628 Score = 532 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 246/647 (38%), Positives = 366/647 (56%), Gaps = 26/647 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++NY + +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A I+V+ Sbjct: 2 ANNYTSENIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKSIKVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D+GRG+PV+ HP K +E+IL+TLH+GGKF N+ Y+ SGGLHGVG+S Sbjct: 59 LLKDGGVEVEDDGRGMPVDMHP-VQKKPGVEVILSTLHSGGKFSNNNYQFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS +L + V R + +F G S LE + V + GT + F PD K F Sbjct: 118 VVNALSTKLEILVKRDGQLHRMEFGDGEKRSDLEVIDTVGKRNTGTILRFWPDAKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 RL + ++KA L + + E + + F GL YL Sbjct: 178 -KMSVTRLKHLLRAKAVLCPGLLVTL-------DNQLTGESDAWQFDDGLIEYLLESSRG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + E F G + V+WA+ W E E +Y N I T +GGTH +GLR Sbjct: 230 WERVPQEPFNGAMSAETE---AVDWAVTWLPEGGELIQEAYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + +D+ A +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEFRNLLPRGVKLTPEDIWDRAAFVLSVKMQDPQFAGQTKERLSSRQTAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ EA KL + I +++RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDAFSLWLNQHTDEAEKLADLCINNAQKRLR--AAKKVTRKKVTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + +E+F+VEGDSAGGSAKQAR+R QA++PLRGKI+N S ++ +Q+I D+ Sbjct: 405 TSDDPSQSEIFLVEGDSAGGSAKQARDRVYQAIMPLRGKIMNTWEVDSNEVLGSQEIHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY KV I+ DAD DG HIA+L+ F + L++ H+F+ Sbjct: 465 AVALGIEPGSDDL-GSLRYGKVCILADADSDGLHIATLICALFLRHFPALVKHGHVFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA D+E + +L+ K K GK+ ++RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKEVYYALDKEERDGVLDRIKAEKKRGKVNVTRFKGLGEMNPLQLRETTMAR 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + R L+R++++ D + + ++K +A +R +++E+ + + Sbjct: 584 DTRRLVRLDVSTDDGTHQLMDMLLSK---KRASDRKVWLEEKGNLAE 627 >gi|226946371|ref|YP_002801444.1| DNA topoisomerase IV subunit B [Azotobacter vinelandii DJ] gi|226721298|gb|ACO80469.1| DNA topoisomerase IV, B subunit [Azotobacter vinelandii DJ] Length = 630 Score = 532 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 248/649 (38%), Positives = 360/649 (55%), Gaps = 26/649 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 AQTYNADAIEVLSGLDPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKSVQVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHEDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R + F+ G S LE V + GT + F PD + D Sbjct: 118 VVNALSTRVEVRVRRDGNEYRMAFADGFKASELEIVGSVGKRNTGTSVHFWPDA-RYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ARL + ++KA L + + EK E+++ GL++YL + + Sbjct: 177 PRFSVARLKHVLKAKAVLCPGLSVGFEDKGS-------GEKVEWHYEDGLRSYLADAVGD 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 + E FTG R VEWA+ W E E SY N I TD+GGTH +GLR Sbjct: 230 FPRLPEEPFTGSF---AASREAVEWALLWLPEGGEFRSESYVNLIPTDQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E + R + + +D+ +LS+ + EP+F+GQTK +L S +A V Sbjct: 287 LLDAMREFCEFRSLLPRGVKLAPEDVWERIAFVLSMKLAEPQFSGQTKERLSSREAAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L ++P +L E I + RL+ R+V RK + LPGKLADC Sbjct: 347 SGVVKDAFSLWLNEHPELGLQLAELAISNAGRRLK--AGRKVERKKITQGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 405 AGQDPLRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L+E H+ + Sbjct: 465 AVAIGIDPGSADL-SQLRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVHVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE + ILE K GK +++RFKGLGEM QL+ET MD Sbjct: 524 PPLYRIDLGKEIHYALDEAERDGILERLTAEKKRGKPQVTRFKGLGEMNPLQLRETTMDP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 584 NTRRLVQLTLDDFDGTREVMDML---LAKKRAGDRKSWLETKGNLAEVL 629 >gi|238917987|ref|YP_002931501.1| DNA gyrase subunit B [Edwardsiella ictaluri 93-146] gi|238867555|gb|ACR67266.1| DNA gyrase, B subunit, putative [Edwardsiella ictaluri 93-146] Length = 804 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-DLTGTRVRFWPSMETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLCDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNERLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803 >gi|119713193|gb|ABL97261.1| DNA topoisomerase IV subunit B [uncultured marine bacterium EB0_50A10] Length = 631 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 239/647 (36%), Positives = 364/647 (56%), Gaps = 22/647 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A ++YDA +I +L GL+PV+ RPGMY TD +HL EV+DN++DE ++G+ + I++ Sbjct: 2 AKNSYDAEAIEVLSGLDPVKKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGHCSNIKI 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G + V D+GRG+PV+ HP+ S +E+IL LHAG KF Y SGGLHGVG+ Sbjct: 59 AVLKDGNIRVSDDGRGMPVDIHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218 SVVNALS+ L V V R + FS G +S L++ +V GT ITF+P+PK F D Sbjct: 118 SVVNALSENLEVRVKRDSKEHQITFSNGNKVSELKEVGEVGLRNTGTSITFKPNPKYFED 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 L + ++KA L ++ ++ +K+ +K E++YF GLK+YL E Sbjct: 178 I-EVQIKTLKHLLKAKAVLCPGLRIEFNNEKKSNDK------EKWYFEDGLKSYLVDSSE 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVA 337 L+ + + +N +Y N I T +GG+H +G + Sbjct: 231 GLELVLEHSMVCSKQSD-VQELEFAINWSQKTLKNKLDETYVNLIPTPQGGSHLNGFKSG 289 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L IK++ + + + I +DD++ SA+ I+S ++ P+FAGQTK +L S D V Sbjct: 290 LLDSIKEFCDYRNLLPKGLKINADDVINSAIFIVSSKLQNPQFAGQTKERLDSKDHMSFV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + +D F +L + E K+ E I ++ R + E + + LPGKL+DC Sbjct: 350 SSTTKDTFSIWLNTHTEEGEKIAELAIISAQTRAKVSNIVERKKT--FKGPALPGKLSDC 407 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN S +I +Q+I +L Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 467 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + LRY K+ I+ DAD DG HIA+LL F + L+++ +++ Sbjct: 468 STAIGVLPGNSDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISM 526 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G +YA D++ +++I+ FK K GK KI RFKGLGEM SQL+ET MD Sbjct: 527 PPLYRIDCGKDVLYALDDKQREEIVSTFKGKKGKPKINTQRFKGLGEMNPSQLRETVMDP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+ N+ ++K A R ++++++ S Sbjct: 587 ATRQLVQLSISSSDNANSMMDLLLSK---KNAPARKEWLEKKGSLAK 630 >gi|261868257|ref|YP_003256179.1| DNA topoisomerase IV subunit B [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413589|gb|ACX82960.1| DNA topoisomerase IV, B subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 632 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 356/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A+ I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V+DNGRG+PV+ HP S +E+I++ LHAGGKF N Y SGGLHGVGIS Sbjct: 59 LHKDQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R I+ F G + L + + D Sbjct: 118 VVNALSERVDVTVKRNGEIYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E + + GGL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDT-------WLYQGGLNDYLMEAVNGL 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + + V WA+ W E E SY N I T GGTH +GLR L Sbjct: 231 VTLPEQPFIGEFNGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DDL +LS+ +++P+FAGQTK +L S + + Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIG 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN +A L + I ++ RLR ++V RK + LPGKLADCS Sbjct: 348 GVVKDAFSLWLNQNIQQAELLADMAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCS 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN E++ +Q++ D+ Sbjct: 406 SQDINFTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + LRY KV I+ DAD DG HIA+LL F + L+E H+++ P Sbjct: 466 VALGIDPDNSDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA DE K+ IL+ K K K + RFKGLGEM QL+ET MD N Sbjct: 525 PLYRIDLGKDVFYALDESEKEAILDRLKGK-KCKPNVQRFKGLGEMNPMQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++T ++++ L+ K A++R ++Q + +D Sbjct: 584 RRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629 >gi|121998762|ref|YP_001003549.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1] gi|121590167|gb|ABM62747.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1] Length = 636 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 246/650 (37%), Positives = 361/650 (55%), Gaps = 22/650 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 YDAS I +L GLEPVR RPGMY T+ HL EVIDN++DE +AG+A Sbjct: 2 TTKTQQTYDASDIEVLTGLEPVRRRPGMY---TETNRPDHLAQEVIDNSVDEAVAGHARR 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV++ +G L V D+GRG+PV+ HP +E+IL LHAGGKF + +Y SGGLHG Sbjct: 59 IEVTVHADGSLEVSDDGRGMPVDMHP-TEGVPAVEVILGRLHAGGKFSSKSYRYSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS L V + R + FS G + PLE+ K R GT + F PD F Sbjct: 118 VGVSVVNALSTRLQVHIRRDGAEHTIAFSAGERIEPLERVGKTRE-TGTTLRFWPDTSYF 176 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F ARL + ++KA L + + PE +Y+ GL+ YL Sbjct: 177 DSPR-FSRARLEHLLRAKAVLCPGLTVILRD--ATGGEGQEPEVLTWYYEDGLRDYLAGA 233 Query: 277 LENRSLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 + + + FT + + + W E + SY N I T +GGTH +GLR Sbjct: 234 VADYEHLPDPPFTARLGSEHEEMECALVW---LPEGSGPAESYVNLIPTPQGGTHVNGLR 290 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LT ++++ EL R + I +D+ +LSV + EP+FAGQTK +L S + Sbjct: 291 TGLTEAMREFCELRNLLPRGVRIAPEDVWEHISYVLSVKMHEPQFAGQTKERLSSRNCAA 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V A++D F +L ++ A ++++ V+ ++ R+R ++V RK LPGKLA Sbjct: 351 FVSGAVKDAFSLWLNEHTQSAEQIVDLVVRAAQ--RRQRAAKKVTRKRVGSGPALPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ +ELF+VEGDSAGGSAKQAR R QAV+PLRGKILN +++ +Q++ Sbjct: 409 DCTGQDPARSELFLVEGDSAGGSAKQAREREFQAVMPLRGKILNTWEVAPDEVMASQEVH 468 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 D+ ALG S+ LRY KV ++ DAD DGAHIA+LL F + L+ H+++ Sbjct: 469 DIAVALGVDPGSEDL-SGLRYHKVCVLADADPDGAHIATLLCALFQRHFPALVAGGHVYV 527 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI G ++ YA D + +Q IL+ + KGK++ +RFKGLGEM QL+ET M Sbjct: 528 AMPPLYRIDVGKQTFYALDRDERQGILDRIEAERIKGKVQETRFKGLGEMNPVQLRETTM 587 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682 + R L+++ ++ +T+ + L+G A +R ++++ + + + Sbjct: 588 APDTRRLVQLTVDD----PDETERLLGMLLGRGAAAQRREWLESKGNLAE 633 >gi|212219466|ref|YP_002306253.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154] gi|212013728|gb|ACJ21108.1| topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154] Length = 641 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 247/652 (37%), Positives = 365/652 (55%), Gaps = 24/652 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 7 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 64 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 122 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 123 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 182 SHYFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 235 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 293 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 294 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RL +++ RK LPGK Sbjct: 354 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLCM--SKKIERKKVTTGPALPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 412 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 472 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 531 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 590 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 M+ + R L+R+ + S T+ ++ L+ K A +R +++++ + + Sbjct: 591 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 638 >gi|161348145|ref|ZP_02095533.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|164601296|gb|EDQ95073.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat Q177'] Length = 636 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 247/652 (37%), Positives = 365/652 (55%), Gaps = 24/652 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ Y A +I +L GLEPV+ RPGMY TD +HL E IDN++DE IAG+A Sbjct: 2 PTKKTTGKGYTAEAIEVLSGLEPVKRRPGMY---TDTSRPNHLAHEAIDNSVDEAIAGFA 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +EV L +G L V+D+GRG+P++ HP+ + +E+ILT LHAG KF TYE SGGL Sbjct: 59 QNVEVILYKDGSLEVIDDGRGMPIDVHPEH-KLTGVELILTRLHAGAKFSTKTYEYSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS +L V V + I+ F+ G S L +++ GT I F PD Sbjct: 118 HGVGISVVNALSKKLTVQVKKDGKIYQMDFAHGEKTSKLRPVGSCNKSESGTSIHFWPD- 176 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + D F + L ++KA L + + + ++ ++Y+ GLKTYL Sbjct: 177 SHYFDSVKFGVSALKHTMRAKAVLCLGLTVHFIDE-------NTGQRLQWYYAEGLKTYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L +R + E + G + T + A ++ SY N I T +GGTH +G Sbjct: 230 ADSLRDRERLPEEPWVGSFSGE-TEKADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNG 288 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E+ + R + + S+D+ +LSV ++EP+F+GQTK +L S + Sbjct: 289 LRTGLLEAMREFCEIHKLLPRNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQS 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L N L E VI +++RL +++ RK LPGK Sbjct: 349 AVFVSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLCM--SKKIERKKVTTGPALPGK 406 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQAR+++ QA++PLRGKILN +E++ +Q Sbjct: 407 LADCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQA 466 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + D+ A+G S E LRY K+ I+ DAD DG HIA+LL F + Y L+ H+ Sbjct: 467 VHDIAIAIGVDPDSSNL-EGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHV 525 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G YA DEE K+ +L+ K KG I I RFKGLGEM SQL+ET Sbjct: 526 YVAMPPLYRIDVGKDVFYALDEEEKEGVLDRIKAEKLKGAINIQRFKGLGEMNPSQLRET 585 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 M+ + R L+R+ + S T+ ++ L+ K A +R +++++ + + Sbjct: 586 TMNPDTRHLVRLTV----KSKDKTEQLLDMLLAKKRAADRRDWLEKKGNLAE 633 >gi|84496197|ref|ZP_00995051.1| DNA gyrase subunit B [Janibacter sp. HTCC2649] gi|84382965|gb|EAP98846.1| DNA gyrase subunit B [Janibacter sp. HTCC2649] Length = 715 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 241/713 (33%), Positives = 347/713 (48%), Gaps = 62/713 (8%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + A +S +Y A +++LEGLE VR RPGMYIG TD + L H E+IDNA+ Sbjct: 2 SPTSTAKKAATTKSSTDYSAHHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAV 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE + G+ + IEV L +G + V D RGIPV+ P+ + +E++ T LHAGGKF Sbjct: 62 DEALGGHGDRIEVILHKDGSVEVRDVARGIPVDIEPR-TGLTGVEVVFTKLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK----------- 195 +Y SGGLHGVG SVVNALS L V V R ++ F RG P + Sbjct: 121 SYTASGGLHGVGASVVNALSARLDVEVDRGGNTYAMSFRRGEPGYFPDVASADKSPDHEF 180 Query: 196 ------------KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 + R GTRI + DP+IF A FD LL + ++L + Sbjct: 181 TPYERTSELAIIGKAKRGVTGTRIRYWADPQIFIRDAEFDYDGLLGRARQTSFLVPGLAL 240 Query: 244 CWSCDKEIAEKYGI--PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------- 293 ++ + G P +E F GG+ Y + + ++ G Sbjct: 241 VIRDERGLPGTAGESGPHEEVFLHDGGISEYAEFLAPDPAVTDVWRLQGTGNFTETVPVL 300 Query: 294 --------KKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKK 344 ++ V+ A+ W +++S+ N I T +GGTH +G AL + +K Sbjct: 301 DAKGHMSPQEVERECEVDVAVRWGTGYDAKVSSFVNIIATPKGGTHMAGFEQALLKVFRK 360 Query: 345 YAELT---QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV----E 397 E+ + + DD++ +++V + EP+F GQTK L + + V E Sbjct: 361 QLEVNARRLKVGSDKVDKDDILAGLTAVVTVRLAEPQFEGQTKEVLGTNAVRAIVGRVIE 420 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 L +A LLE V + R+ R +E +K A+ LP KLADC Sbjct: 421 KELTANLTSTKRGEKQQAAMLLEKVTAEMKSRISARLHKETQRKKNALETSSLPAKLADC 480 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 N TELFIVEGDSA G+AK ARN QA+LP+RGKILNV A + N + + Sbjct: 481 RSNDVDRTELFIVEGDSALGTAKLARNSDIQALLPIRGKILNVQKASLTDMLGNAECAAI 540 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +Q LG + + + RY KVIIMTDADVDGAHI +LLLT F++ M L+E ++ Sbjct: 541 IQVLGAGSGRSFDVDAARYGKVIIMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAV 600 Query: 577 PPLFRIT------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLK 629 PPL RI + + +Y + E +K + K G+ K + R+KGLGEM A QL Sbjct: 601 PPLHRIEVAGMGARKGELIYTYSEGEMRKTVASLAKKGRNIKQPMQRYKGLGEMDADQLA 660 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD + RTL +V + + ++ LMG + R FI + ++ +D Sbjct: 661 ETTMDPHHRTLRKVTM----ADAEASERIFELLMGNEVAPRRDFIVKGSARLD 709 >gi|269137362|ref|YP_003294062.1| DNA gyrase subunit B [Edwardsiella tarda EIB202] gi|267983022|gb|ACY82851.1| DNA gyrase subunit B [Edwardsiella tarda EIB202] gi|304557463|gb|ADM40127.1| DNA gyrase subunit B [Edwardsiella tarda FL6-60] Length = 804 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-EQTGTRVRFWPSMETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNERLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803 >gi|259508306|ref|ZP_05751206.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314] gi|259164124|gb|EEW48678.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314] Length = 660 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 240/672 (35%), Positives = 354/672 (52%), Gaps = 63/672 (9%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL EV+DN++DE +AGYA+ ++V+L +G + V+DNGRGIPVE H Sbjct: 1 MYIGSTGSRGLHHLIWEVVDNSVDEAMAGYADRVDVTLLEDGGVEVIDNGRGIPVEMH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS + + + + Q Sbjct: 59 ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAHIKKDGKHWYQN 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ IP +E GT I F PD +IF FD + + Q A+L+ + Sbjct: 119 FNNSIPEDLVE--GANARGTGTSIRFWPDAEIFETT-DFDFDTISRRLQEMAFLNKGLTM 175 Query: 244 CWSCDKEIAEKYGIPEKEE----------------------------------------- 262 + ++ E+ + E Sbjct: 176 TLTDNRASDEELELEALAEQGDTAVELSLDQIDADGETQLVDAEVTDAPKKPKKREKKKI 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 F++P GL+ Y+ ++ I I + + + VE A+ W + ++ NT Sbjct: 236 FHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA---AEHEVEIAMQWNSSYKESVHTFANT 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T EGGTHE G R ALT + +YA + ++ ++ DD ++SV + EP+F Sbjct: 293 INTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKEANLTGDDCREGLSAVISVRVSEPQF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438 GQTKTKL + + + V+ + H+L NP EA ++ + ++ RL RK R+ V Sbjct: 353 EGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKVIINKAVGSAQARLAARKARDLV 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ QA+LPLRGKILN Sbjct: 413 RRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 V A +K+ N ++ ++ ALG ++ LRY K+++M DADVDG HIA+LLLT Sbjct: 473 VEKARLDKVLKNSEVQAIITALGTGIHDEFDINKLRYHKIVLMADADVDGQHIATLLLTL 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIE---- 613 ++ M DLI + H++L PPL+++ + +A+ +E + + LEE G+ KI Sbjct: 533 LFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFAYSDEERDQQLEEGLAAGR-KINKDDG 591 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF 673 I R+KGLGEM ++L ET MD + R L RV DL + + + LMG R F Sbjct: 592 IQRYKGLGEMNPNELWETTMDPSVRILRRV----DLADAQRADELFSILMGDDVVARRSF 647 Query: 674 IQERASFIDDVG 685 I A + + Sbjct: 648 ITRNAKDVRFLD 659 >gi|293390334|ref|ZP_06634668.1| DNA topoisomerase IV, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950868|gb|EFE00987.1| DNA topoisomerase IV, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 632 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 358/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A+ I +L+ LEPV++RPGMY TD +HL EVIDN++DEV+AG+A IEV Sbjct: 2 TTNYSANEITVLKDLEPVQLRPGMY---TDTTRPNHLAQEVIDNSVDEVLAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V+DNGRG+PV+ HP S +E+I++ LHAGGKF N Y SGGLHGVGIS Sbjct: 59 LHKDQSIEVIDNGRGMPVDIHP-VEKVSGVEVIMSKLHAGGKFSNKNYTFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + VTV R ++ F G + L + + D Sbjct: 118 VVNALSERVDVTVKRNGEVYKIAFENGKKVEDLTVIGTCGRRTTGTTVHFKPNPKYFDSE 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + + E + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDNVNDTEDT-------WLYQDGLNDYLMEAVNGL 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + + V WA+ W E E SY N I T GGTH +GLR L Sbjct: 231 VTLPEQPFIGEFNGE---KEAVSWALLWLPEGGELIGESYVNLIPTALGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E R + + +DDL +LS+ +++P+FAGQTK +L S + + Sbjct: 288 LDAMREFCEFRNLLPRGVKLTADDLWDRCAYVLSLKMQDPQFAGQTKERLSSRQSAVFIG 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 ++D F +L QN +A L + I ++ RLR ++V RK + LPGKLADCS Sbjct: 348 GVVKDAFSLWLNQNIQQAELLADMAISSAQRRLR--AAKKVIRKKLVSGPALPGKLADCS 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN E++ +Q++ D+ Sbjct: 406 SQDINFTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPEQVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + LRY KV I+ DAD DG HIA+LL F + L+E H+++ P Sbjct: 466 VALGIDPDNSDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVELGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE K+ IL+ K KGK + RFKGLGEM QL+ET MD N Sbjct: 525 PLYRIDLGKEVFYALDESEKEAILDRLKGK-KGKPNVQRFKGLGEMNPMQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ ++T ++++ L+ K A++R ++Q + +D Sbjct: 584 RRLVQLTFEAQSEEKRETIETMDMLLAKKRAEDRKNWLQAKGDQVD 629 >gi|330721164|gb|EGG99282.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC2047] Length = 631 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 356/647 (55%), Gaps = 26/647 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ Y+A SI +L GL+PV+ RPGMY T+ +HL EVIDN++DE +AG+A ++V Sbjct: 2 STGTYNADSIEVLSGLDPVKRRPGMY---TETTRPNHLAQEVIDNSIDEAMAGFARRVDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G L+V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHGVG+ Sbjct: 59 ELHNDGSLSVSDDGRGMPVDIHPE-EGVSGVELILTRLHAGGKFSNKNYQFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS L+V + R + F+ G L + V + GT + F P+ K F Sbjct: 118 SVVNALSYRLNVEIKRGGKKYRIAFASGDKTEDLIEIGTVGQRNTGTLVHFWPEAKYFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL ++KA L ++ + + E+E + + GL+ YL + Sbjct: 178 P-KFSVSRLKHTLRAKAVLCPGLEVNFID-------HNSGERESWCYEDGLQDYLTQATQ 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 I E FTG EWA+ W E E SY N I T +GGTH +G R Sbjct: 230 GFETIPKEPFTGSLSGD---EEAAEWAVQWLPEGGELITESYVNLIPTAQGGTHVNGFRS 286 Query: 337 ALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 + ++++ E R + + ++DL ILS+ + +P+F+GQTK +L S Sbjct: 287 GMIDSLREFCEFRNLLPRGVKLSAEDLWDRCAYILSIKMSDPQFSGQTKERLSSRQCAPF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L N A L + I ++ RLR ++V RK + LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNSNTEAAELLADMAINNAQRRLR--ASKKVVRKKVTQGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S +I +Q++ D Sbjct: 405 CSSQDVNQTELFLVEGDSAGGSAKQARDRVFQAILPLRGKILNTWEVDSSEILGSQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG S + LRY K+ I+ DAD DG HIA+LL F + ++ H+++ Sbjct: 465 ISVALGVDPGSDNL-DGLRYGKICILADADSDGLHIATLLCALFVRHFKPMVMAGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMD 634 PPLFRI G + YA E KQ +L+ K GK+ + RFKGLGEM QL+ET M Sbjct: 524 MPPLFRIDVGKEVYYALSEYEKQGVLDRIAAEKKRGKVNVQRFKGLGEMNPMQLRETTMT 583 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 + R L+R+ ++ + + L ++ +R ++++E + + Sbjct: 584 PDTRRLVRLTLDAGDGTHEVMDKL---LAKKRSQDRKQWLEESGNLV 627 >gi|308801547|ref|XP_003078087.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri] gi|116056538|emb|CAL52827.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri] Length = 684 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 245/652 (37%), Positives = 359/652 (55%), Gaps = 32/652 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S YDA SI++L+GLEPVR RPGMYIG T K LHHL EV+DN++DEV AG+A+ ++V+ Sbjct: 57 SGEYDAGSIQVLQGLEPVRKRPGMYIGSTSTKGLHHLVWEVLDNSVDEVQAGHASHVQVT 116 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVG 158 +D +GF+TV+D+GRGIP + HP KS+LE +LT LHAGGKF + Y +SGGLHGVG Sbjct: 117 VDDDGFVTVMDDGRGIPTDVHP-VTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGVG 175 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS+ + VTV + ++++ NK+GT + F+PD +IF Sbjct: 176 ISVVNALSELVEVTVHATGNMKE------------KQQDGSGNKKGTMVRFKPDDQIFDK 223 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 FD + + A+L+ + K K +E+ + GLK Y+ Sbjct: 224 -VKFDNNIIRTRMKELAFLNKGTELHL---KTFNTKTKSYVEEKLVYAEGLKDYVLDLTA 279 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338 + + + T E +G R + + Y N+I T +GGTH GL+ +L Sbjct: 280 DATRLHEP-ITFSGEMEGI-RVEGSLCWTADSYSDTLLGYANSIRTIDGGTHIDGLKYSL 337 Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ I + + + ++ D + G+++V++ EPEF GQTKT+L + + +R V Sbjct: 338 TKTINNASRKAKLLKDADSNLGGDHVREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIV 397 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIER-SEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 EN D + N + + +R + V RKT + RLPGKL+D Sbjct: 398 ENIASDAVMGHFEFNSADLKAVFAKAQSAFKAAEAAKRARELVRRKTVLTANRLPGKLSD 457 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA-SAGSEKIRNNQQIM 514 CS + A TE+F+VEGDSAGGS KQ R+RS QAVLPLRGKI+NV + + N +I Sbjct: 458 CSSSDADRTEIFLVEGDSAGGSCKQGRDRSFQAVLPLRGKIMNVERKLDAAALYKNTEIT 517 Query: 515 DLVQALGCRTRSQY-REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 +++ ALG T + LRY K+II+TDADVDGAHI +LLLTF Y+ DL E+ ++ Sbjct: 518 NMISALGLGTMGEDLDTSALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGFVY 577 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+++ G K Y +D++ Q++L + I RFKGLGEM+ QL T + Sbjct: 578 AAVPPLYKVAVGKKETYCYDDDDLQRVLAALPEGANK--HIQRFKGLGEMMPEQLWSTTL 635 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R L R+ ++ + LM + D R + I+E + + + Sbjct: 636 DPKTRLLKRLTVDD----ASAANHMFSTLMSKEVDPRRRLIEEEGAALASID 683 >gi|145637577|ref|ZP_01793234.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH] gi|145269263|gb|EDK09209.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH] Length = 632 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 357/646 (55%), Gaps = 22/646 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A+ IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFASKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP + S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDTHP-TESVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEVIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---TNEAVSWALLWLPEGSELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDESEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ + + DT + ++ L+ K +++R ++Q + +D Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVD 629 >gi|237729021|ref|ZP_04559502.1| DNA gyrase subunit B [Citrobacter sp. 30_2] gi|226909643|gb|EEH95561.1| DNA gyrase subunit B [Citrobacter sp. 30_2] Length = 804 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ + Q + G+P +PL + GT++ F P + F + Sbjct: 121 SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-ELTGTQVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE +K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|327482439|gb|AEA85749.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri DSM 4166] Length = 628 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 243/647 (37%), Positives = 355/647 (54%), Gaps = 26/647 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A ++V L Sbjct: 2 SYTAEAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 58 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + L V+D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y+ SGGLHGVGISVV Sbjct: 59 QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 117 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS + VTV R + F+ G S LE V + GT + F DPK F Sbjct: 118 NALSTRVEVTVKRDGNEYRMSFADGFKASDLEVIGSVGKRNTGTSVRFWADPKYFDSP-K 176 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +RL + ++KA L + + EK E+++ GL++YL + Sbjct: 177 FSISRLKHVLKAKAVLCPGLSVSFEDK-------STGEKVEWHYEDGLRSYLVDSVSEYQ 229 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + E F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 230 RLPDEPFVGALAGNTE---AVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 286 Query: 340 RGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A V Sbjct: 287 DAMREFCEFRNLLPRGLKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 346 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L +P +L E I + RL+ ++V RK + LPGKLADC+ Sbjct: 347 VVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--AGKKVERKKITQGPALPGKLADCAG 404 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELF+VEGDSAGGSAKQAR++ QA++PLRGKILN ++ +Q++ D+ Sbjct: 405 QDPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 464 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E H+++ PP Sbjct: 465 AIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPP 523 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANK 637 L+RI G YA DE + ILE +GK +++RFKGLGEM QL+ET MD N Sbjct: 524 LYRIDLGKDIFYALDEAERDGILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 R L+++ ++ + + L +A +R +++ + + + + Sbjct: 584 RRLVQLTLDDFEGAREVMDML---LAKKRAGDRKSWLESKGNLAEVL 627 >gi|156936079|ref|YP_001439995.1| DNA gyrase subunit B [Cronobacter sakazakii ATCC BAA-894] gi|156534333|gb|ABU79159.1| hypothetical protein ESA_03973 [Cronobacter sakazakii ATCC BAA-894] Length = 804 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 350/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVSDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL ++ GT++ F P + F + Sbjct: 121 SVVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-DQTGTQVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ +++ F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRD-------GKQDHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|294651940|ref|ZP_06729229.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC 19194] gi|292822172|gb|EFF81086.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 627 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 375/645 (58%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN + V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANQVTVTIY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V R ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + DK EK + F GL YL +LE+R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ AT+L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA D++ + IL+ K G +I+RFKGLGEM ASQL+ET MD N Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKNIK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R +++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624 >gi|321309552|ref|YP_004191881.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1] gi|319801396|emb|CBY92042.1| DNA gyrase subunit B [Mycoplasma haemofelis str. Langford 1] Length = 662 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 235/656 (35%), Positives = 359/656 (54%), Gaps = 28/656 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY SSI++LEGLE VR RPGMYIG TD K LHHL EV+DN++DEV+AG+A+ + ++L Sbjct: 21 NYTDSSIKVLEGLEAVRERPGMYIGSTDFKGLHHLIWEVLDNSVDEVLAGHADEVVLTLK 80 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N +++ DNGRGIP +P+ N S L + T LHAGGKFDN++Y+ SGGLHGVG + V Sbjct: 81 PNHVISISDNGRGIPTGINPQ-TNISNLITVFTILHAGGKFDNNSYKTSGGLHGVGSTCV 139 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS+ + +TV R F G + K GT++T++PD IF + Sbjct: 140 NALSEFMEITVCRNGEEHFVSFKNGGKIDKEPTLVSQVPAEKTGTKVTWKPDFSIFDK-S 198 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D + + AYL+ + + K F+F G+ ++ +R Sbjct: 199 DYDVELIETRLERLAYLNKGKRFVFDNQISNEVKE-------FFFKEGISDWVTNLNHSR 251 Query: 281 SLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 I+ IF + + ++ A + + P + S+CN I T GGTH Sbjct: 252 KAINDVIFLKEDGTVKNRRTPDVQNSISISCAFQYTLGDAPIVYSFCNNIYTASGGTHLE 311 Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + L I++ + + K ++ I+ D++ I+S+ PE++GQTK L +++ Sbjct: 312 SFKDGLLSCIRERSLEAKLIKESVDILKSDILAGLTAIVSLNYSNPEYSGQTKEVLSNIE 371 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLP 450 + + + + F +L +N + +L+ V + RL+ R+ +RK A+ + Sbjct: 372 IKSFIREKVEELFGRFLEENTDQCKAILQRVDQERNLRLKVEMARQTDRKLALEGFMSFA 431 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA-GSEKIRN 509 GKLADC+ +EL++VEGDSAGGSAK ARNR QA+LP++GK+LNV + I Sbjct: 432 GKLADCTTKSVDFSELYVVEGDSAGGSAKSARNREYQAILPIKGKLLNVWKKTNTSSIVE 491 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N++I L+ ++GC ++ E LRY K+IIMTDADVDG+HI LLLTF Y+ M LIE+ Sbjct: 492 NEEIKSLISSIGCAYGDKFDREKLRYNKIIIMTDADVDGSHIRILLLTFIYRFMRPLIEE 551 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+R + VY D++ K + + + K EISRFKGLGEM QL Sbjct: 552 GHVYIAQPPLYRAFTNKEVVYLFDDKKKDEFMADKGKS--KSWEISRFKGLGEMSPEQLW 609 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +T M+ +R + +V + ++ + LMG K R +FI S I ++ Sbjct: 610 QTTMNPEERIICKVTVED----MEQVTGIFDDLMGKKVHPRTEFILANYSNIRNLD 661 >gi|50954716|ref|YP_062004.1| DNA topoisomerase IV subunit B [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951198|gb|AAT88899.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07] Length = 694 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 236/696 (33%), Positives = 340/696 (48%), Gaps = 64/696 (9%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 AS +Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ + I+V Sbjct: 2 ASSDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHGSSIDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + + V D RGIPV+ PK + +E++ T LHAGGKF + +Y SGGLHGVG Sbjct: 62 VLHPDNSVEVRDRARGIPVDVEPK-TGLTGVEVVFTKLHAGGKFGSGSYAASGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIP---------------------LSPLEKKEK 198 SVVNALS+ L V V R ++ F RG P S L K Sbjct: 121 SVVNALSERLDVEVDRDGKTWAMSFHRGEPGVFEDGEAVPGPDAPFTPFVSGSELRVVGK 180 Query: 199 V-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 V + GTRI + D IF A F L+ + A+L + + Sbjct: 181 VAKGVTGTRIRYWADRHIFTKGAEFSVDDLIGRARQTAFLVPGIAITIDDKRS-----AE 235 Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT----------------HRGT 301 E F + GGL + + + + TG+ T Sbjct: 236 GESTTFKYDGGLSEFADFLAPDSPITETWRLTGEGTFTETVPVLSDSGAMVTTELKRECH 295 Query: 302 VEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAISI 357 V+ A+ W + S+ N I T +GG+H++G L + ++ + + Sbjct: 296 VDIALRWGTGYDTVMRSFVNIIATPKGGSHQAGFDQGLLKFLRQRVELNARRLKAGTDKL 355 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT----VENALRDPFDHYLVQNPI 413 DD+M +L+V + EP+F GQTK L + + V+ +L + F + Sbjct: 356 EKDDVMAGLTAVLTVRLPEPQFEGQTKEVLGTPAVRAIVAGVVQKSLSERFGSSKRDDKT 415 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 ++ LL+ V+ + R+ R +E RK A+ LP KL DC + +ELFIVEGD Sbjct: 416 QSALLLDKVVAEMKSRISARAHKETQRRKNALETSSLPAKLVDCRSSDVANSELFIVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+A++AR+ QA+LP+RGKILNV A + +N + ++Q +G + + Sbjct: 476 SALGTARRARDSEYQALLPIRGKILNVQKASVSDMLSNAECAAIIQVIGAGSGRTFDIGS 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGT 586 RY KVIIM+DADVDGAHI +LLLT F++ M +IE+ +F PPL R+ + Sbjct: 536 ARYGKVIIMSDADVDGAHIRTLLLTLFFRYMRPMIEEGRVFAAVPPLHRVVVVNPGSNPN 595 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 ++VY + E Q +L + KK GK E I R+KGLGEM A QL T MD RTL RV + Sbjct: 596 ETVYTYSEAELQAVLGDLKKRGKKYQEPIQRYKGLGEMDADQLATTTMDRGHRTLRRVRV 655 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 + + LMG R +FI A + Sbjct: 656 SH----AEGANRVFELLMGNDVAPRKEFIIAGADDL 687 >gi|78047304|ref|YP_363479.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035734|emb|CAJ23425.1| topoisomerase IV subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 673 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 248/676 (36%), Positives = 372/676 (55%), Gaps = 25/676 (3%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69 + PP + S K + S S + + Y+A+ I +L GL+PV+ RPGMY T Sbjct: 15 AARPPTERRSRAKNRLSPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKRRPGMY---T 71 Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 D +HL EVIDN++DE +AG+A +EV+L +G V D+GRG+PV+ HP+ Sbjct: 72 DTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDGSCEVSDDGRGMPVDIHPE-EKIPG 130 Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189 +E+ILT LHAGGKF N Y SGGLHGVG+SVVNALS ++ + + R+ + +F G Sbjct: 131 VELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNA 190 Query: 190 LSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 S LE V + GTR+ F DPK F F+ L + ++KA L + + Sbjct: 191 ASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCPGLTVKLHDE 249 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 E++ +YF GL+ YL+ ++ L+ +++F G +K V+WA AW Sbjct: 250 -------ATGEQDSWYFENGLRDYLKGEMAEHELLPADLFVGSLKKDTEI---VDWAAAW 299 Query: 309 CEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366 E SY N I T + GTH +GLR LT ++++ + R + + +D+ Sbjct: 300 VPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRV 359 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 +LS+ + +P+F+GQTK +L S A +E A D F YL QN K+ + I+R+ Sbjct: 360 TFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRA 419 Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486 RL+ ++++ RK + LPGKLADC TELF+VEGDSAGGSAKQAR++ Sbjct: 420 SARLK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDF 477 Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADV 546 QA+LPLRGKILN S + ++++ +L A+GC LRY KV+I+ DAD Sbjct: 478 QAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGKVVILADADS 536 Query: 547 DGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606 DG HIA+LL F Q L+ H+F+ PPLFR+ G + YA DEE K +L++ + Sbjct: 537 DGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEKTTLLDKIAR 596 Query: 607 HG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 KG+I ++RFKGLGEM QL+E+ + + R L+++ I+ + L Sbjct: 597 EKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMDML---LAKK 653 Query: 666 KADERFKFIQERASFI 681 +A +R ++++ + Sbjct: 654 RASDRKQWLETKGDLA 669 >gi|290956928|ref|YP_003488110.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22] gi|260646454|emb|CBG69551.1| GyrB-like gyrase subunit [Streptomyces scabiei 87.22] Length = 706 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 237/686 (34%), Positives = 338/686 (49%), Gaps = 51/686 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + IEV L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVIL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--------------KRGTRI 207 VNALS L V V R + + F RG+P + + + GTR+ Sbjct: 140 VNALSARLDVEVDRNGSTHAISFRRGVPGAFAGIGPDAKFETGGLRKGKRIPKTRTGTRV 199 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 + D +IF A L + + A+L + + + E E E F F G Sbjct: 200 RYWADRQIFLKDAKLSLEHLHQRARQTAFLVPGLTIVVRDEFGLGEGGSKGE-ESFRFDG 258 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKG----------------THRGTVEWAIAWCEE 311 G+ + + ++ + F+G+ K T V+ A+ W Sbjct: 259 GISEFCEYLASDKPVCDILRFSGQGTFKETVPVLDEHGQMTPTQVTRELGVDVAMRWGTG 318 Query: 312 NPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVG 368 S+ N I T +GGTH +G A+ + + + R DD + Sbjct: 319 YDTTLKSFVNIIATPKGGTHVAGFEQAVASTMNEVLRAKKMLRVAEDDIVKDDALEGLTA 378 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER--- 425 +++V + EP+F GQTK L + A+R V + +L +A V+E+ Sbjct: 379 VVTVRLAEPQFEGQTKEVLGTSAARRIVAQVIAKELKAFLTSAKRDAAAQARVVMEKAVA 438 Query: 426 --SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK ARN Sbjct: 439 AARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELFIVEGDSALGTAKLARN 498 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV + + N + ++Q +G + + + RY K+I+MTD Sbjct: 499 SEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIIMMTD 558 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHK 597 ADVDG+HI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 559 ADVDGSHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDREL 618 Query: 598 QKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L EF+ G + K I R+KGLGEM A QL ET MD RTL R+ ++ L+ + Sbjct: 619 RDRLLEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRINLSD----LEAAE 674 Query: 657 DSINKLMGTKADERFKFIQERASFID 682 + LMG R +FI A+ +D Sbjct: 675 QVFDLLMGNDVAPRKEFISSSAATLD 700 >gi|317046242|ref|YP_004113890.1| DNA gyrase subunit B [Pantoea sp. At-9b] gi|316947859|gb|ADU67334.1| DNA gyrase, B subunit [Pantoea sp. At-9b] Length = 802 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCSDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L +T+ R + Q + G+P +PL + GTR+ F P + F + Sbjct: 121 SVVNALSQKLELTIRRDGKVHQQTYVHGVPQAPLAVVGDT-DATGTRVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ +K+ +++ GG+K +++ N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLEDKRD-------DKKDHYHYEGGIKAFVEYLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KNPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801 >gi|227875503|ref|ZP_03993643.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|227843839|gb|EEJ54008.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] Length = 736 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 237/697 (34%), Positives = 342/697 (49%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 41 QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 100 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+PV+ P S +E++ T LHAGGKFD+ Y+++GGLHGVG SV Sbjct: 101 YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 159 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R I +F RG P S L K KV Sbjct: 160 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 219 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GTR+ F D +IF FD L + + ++L ++ + + P+ Sbjct: 220 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLRITVTDSR-----GEEPQS 274 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 E + GG Y++ ++ + + G ++ V+ Sbjct: 275 ETYLHKGGTVDYVEFLAPDKGITGTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 334 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH G AL + ++ + K + I Sbjct: 335 IALRWGVGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKI 394 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D++ +++V + EPEF GQTK L S + V + + +L + Sbjct: 395 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 454 Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 LE ++ RL R +E RK A+ LP KL DC N +ELFIVEGD Sbjct: 455 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 514 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q +G + + + Sbjct: 515 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 574 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M LI ++ PPL RI +G Sbjct: 575 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 634 Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + Y + E+ + L ++G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 635 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 694 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + L +D LMG+ R FI + A+ +D Sbjct: 695 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 730 >gi|307325031|ref|ZP_07604235.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] gi|306889177|gb|EFN20159.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] Length = 707 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 237/687 (34%), Positives = 343/687 (49%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ + IEV L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLSHCLWEIIDNSVDEALGGFCDHIEVIL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206 VNALS L V V R + F RG+P E + + GTR Sbjct: 140 VNALSARLDVEVDRDAKTHAISFRRGVPGIFTESGPDAPFDPSSGLLKGKRVPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I + D +IF A L + A+L + ++ E P +E F + Sbjct: 200 IRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLVVRDER-ALEGREGPVEETFRYD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + +++++ +G + T V+ A+ W Sbjct: 259 GGISEFCEYLAQDKAVCDVLRLSGHGTFKETVPVLDERGHMTPTEVTRDLGVDIALRWGT 318 Query: 311 ENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 + S+ N I T +GGTH +G A+ R + + + R DD M Sbjct: 319 GYDATVKSFVNIIATPKGGTHVAGFERAIARTVNEALRSAKLLRVAEDDVVKDDAMEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V N + +L +A + V+E+ Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVSKELKEFLTSPKRDAKQQARAVLEKVV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVGRSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY KVI + Sbjct: 499 NSEFQALLPIRGKILNVQKSSISDMLKNVECGAIIQVIGAGSGRTFDIDQARYGKVIFLA 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++EQ +F PPL R+ +G K +Y + ++ Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEQGRVFSAVPPLHRVELVNPKRGQSKYIYTYSDQE 618 Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 Q+ L + ++ + K I R+KGLGEM A QL ET MD RTL R+ I+ L+ Sbjct: 619 LQETLLDLQRREVRYKDGIQRYKGLGEMDADQLAETTMDPRHRTLRRINISD----LEAA 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + + LMG + R +FI A+ +D Sbjct: 675 ERAFDLLMGNEVAPRKEFITNSAATLD 701 >gi|261341641|ref|ZP_05969499.1| hypothetical protein ENTCAN_08109 [Enterobacter cancerogenus ATCC 35316] gi|288315998|gb|EFC54936.1| DNA gyrase, B subunit [Enterobacter cancerogenus ATCC 35316] Length = 803 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q ++ G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG++ +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIRAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|253681965|ref|ZP_04862762.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873] gi|253561677|gb|EES91129.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873] Length = 652 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 214/663 (32%), Positives = 341/663 (51%), Gaps = 34/663 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++YD + + LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY + Sbjct: 5 ENKNKNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGDK 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + + L+ + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHG Sbjct: 65 VTLILNKDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTR 206 VG +VVNALS+ + V V ++ I+ Q+F S +K N GT+ Sbjct: 124 VGAAVVNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDTNNTGTK 183 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF+PD ++F F + + Q A+ + + +++ ++ Sbjct: 184 ITFKPDKEVFSTT-DFKFEVIDERLQELAFQNKGITLVIKDERKEDIIEKE-----YHSE 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GL +++ E+++ I E + E++ + + E I + + + I SY N I T Sbjct: 238 RGLLDFIEYLNESKTPIHKEPLIFEGEREVNSIKVYSEVCIQFTDSSTENIASYVNNIPT 297 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 E GTHE+G + +TR K++A ++ DDL IL V I P F GQ Sbjct: 298 TESGTHETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQ 357 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TKTKL + +A + ++ N AT+++ + + R + +K + +K Sbjct: 358 TKTKLGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKK 417 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 L GK++ C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 418 IGKGAAPLAGKVSICTLKKPDVCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEK 477 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 E + ++++ A+G Y E+DL+Y K+II++DADVDG HI +L +T+ Y+ Sbjct: 478 QRLENVLASEELKLFNTAIGTGVLENYNEDDLKYNKIIILSDADVDGYHIRTLWITYIYR 537 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 M LI HL++ PPL+++ + +K YA+ ++ + E K I R+ Sbjct: 538 YMKSLITNGHLYIALPPLYKVYKNSKNGEVKRYAYSDDELEVAKREIGKGAL----IQRY 593 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM QL +T ++ RTL ++ I + I+ LMG + R ++ + Sbjct: 594 KGLGEMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKY 649 Query: 678 ASF 680 A F Sbjct: 650 AEF 652 >gi|330807209|ref|YP_004351671.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375317|gb|AEA66667.1| Topoisomerase IV subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 634 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 244/654 (37%), Positives = 366/654 (55%), Gaps = 28/654 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 VQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS ++ V V R + F+ G + LE V + GT + F PDPK Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYQMTFADGYKATELEVVGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 178 FDSP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------ATGEKVEWHYEDGLRSYLVD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + +E F G + V+WA+ W E E SY N I T +GGTH +G Sbjct: 230 AVNYFERLPNEPFCGSLAGN---KEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L NP L E I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNANPETGLALAELAINNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAADM-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 MD N R L+++ ++ + T + ++ L+ K A +R +++ + + + Sbjct: 584 TMDPNTRRLVQLTLDD----FEATSEMMDMLLAKKRAGDRKSWLESKGDLAEVL 633 >gi|294638324|ref|ZP_06716577.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685] gi|291088577|gb|EFE21138.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685] Length = 804 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 229/566 (40%), Positives = 345/566 (60%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDT-EQTGTRVRFWPSMQTFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMESEGYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNERLAEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANLD 803 >gi|326776128|ref|ZP_08235393.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus XylebKG-1] gi|326656461|gb|EGE41307.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus XylebKG-1] Length = 708 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 235/709 (33%), Positives = 345/709 (48%), Gaps = 53/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 S NY A + +LEGLE VR RPGMYIG TD + L H Sbjct: 1 MTAETSVPSTAMLTGAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E+IDN++DE + G+ + IEV L + + V DNGRGIPV+ PK S +E+++T LHA Sbjct: 61 EIIDNSVDEALGGHCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF +Y SGGLHGVG SVVNALS L V V R + S F RG+P E+ Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDS 179 Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 + + GTR+ + D +IF A + L + + A+L + Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTII 239 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293 ++ + + E F F GG+ + + +++++ + +G Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297 Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 + T V+ A+ W S+ N I T +GGTH +G +LT+ + + Sbjct: 298 GHMTATEVTRELAVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357 Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + R DD + +++V + EP+F GQTK L + A R V + Sbjct: 358 SAKMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELK 417 Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 +L +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 418 AFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q + Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL Sbjct: 538 GAGSGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLH 597 Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 RI +G K VY + + ++ L EF +K+ + K I R+KGLGEM A QL ET M Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702 >gi|202078776|gb|ACH96434.1| DNA gyrase subunit B [Edwardsiella tarda] Length = 804 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-EQTGTRVRFWPSMETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFQYDILAKRLRELSFLNSGVSIRLRDKRNDRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMENEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNERLAEYLLENPSDAYIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQMSIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKASNLD 803 >gi|307701026|ref|ZP_07638051.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus mulieris FB024-16] gi|307614021|gb|EFN93265.1| DNA gyrase, B subunit, C-terminal domain protein [Mobiluncus mulieris FB024-16] Length = 722 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 237/697 (34%), Positives = 341/697 (48%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 27 QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 86 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+PV+ P S +E++ T LHAGGKFD+ Y+++GGLHGVG SV Sbjct: 87 YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 145 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R I +F RG P S L K KV Sbjct: 146 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 205 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GTR+ F D +IF FD L + + ++L + + + P+ Sbjct: 206 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 260 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 E + GG Y++ ++ + + G ++ V+ Sbjct: 261 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 320 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH G AL + ++ + K + I Sbjct: 321 IALRWGAGYDTVEQSYVNIIETPVGGTHVQGFETALVKTLRTEIQANSRKLKLGSKDNKI 380 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D++ +++V + EPEF GQTK L S + V + + +L + Sbjct: 381 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKI 440 Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 LE ++ RL R +E RK A+ LP KL DC N +ELFIVEGD Sbjct: 441 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 500 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q +G + + + Sbjct: 501 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 560 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M LI ++ PPL RI +G Sbjct: 561 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 620 Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + Y + E+ + L ++G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 621 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 680 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + L +D LMG+ R FI + A+ +D Sbjct: 681 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 716 >gi|281413680|ref|ZP_06245422.1| DNA topoisomerase IV subunit B [Micrococcus luteus NCTC 2665] Length = 692 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 233/695 (33%), Positives = 333/695 (47%), Gaps = 60/695 (8%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 A+ Y+A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ IE Sbjct: 2 PANTEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L +G + V DNGRGIPV+ P+ S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 62 ITLHPDGSVEVEDNGRGIPVDVEPR-TGLSGVEVVFTKLHAGGKFGGGSYAASGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE---------------------KKE 197 SVVNALS L V V R + F RG P + + Sbjct: 121 ASVVNALSSRLDVQVLRGGKVHQMSFRRGEPGRFQDGSRPSPDAPFEPSTDASPLDVVGK 180 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK--Y 255 R + GTR+ + D +IF A F A L + AYL ++ + Sbjct: 181 AKRGQTGTRVRYWADEQIFVKDATFSAEELQARARQTAYLIPGLRITVKDLRRRPGTPGA 240 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT----------------EKKGTHR 299 P +E F + GG+ +++ + G + Sbjct: 241 DGPVEEVFQYDGGISEFVEHLTPATPVTDVWRIQGSGTFKERVPVLGEDGRTSMQDVQRT 300 Query: 300 GTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIK---KYAELTQNKRAI 355 V+ A+ W + S+ N I T +GGTH+SG AL + + + + Sbjct: 301 CEVDVALRWDVGYDTVFRSFVNIIATPKGGTHQSGFEAALLKVFRAQVEANARRLKAGSD 360 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + DD++ +L+V + EP+F GQTK L + +R V + L Sbjct: 361 KVEKDDVLAGMTAVLTVRLAEPQFEGQTKEILGTSAVRRIVSQVVEKQLTARLTSTARAQ 420 Query: 416 TKLLE----WVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 + + V+ + R+ R + RK A+ +P KLADC N +ELFIVE Sbjct: 421 KQQVHTLLEKVVAEMKSRISARTHKENQRRKNALETSTMPAKLADCRSNDVASSELFIVE 480 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+AK AR+ QA+LP+RGKILNV A I N + L+Q +G + Sbjct: 481 GDSALGTAKLARSSDFQALLPIRGKILNVQKASVSDILANAECAALIQVVGGGAGRSFDL 540 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---TQG-- 585 + RY KV++MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI T+G Sbjct: 541 DAARYGKVVLMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRVYAAVPPLHRIEAVTRGVK 600 Query: 586 -TKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRV 643 + +Y + E+ L ++ G+ E I R+KGLGEM A QL ET MD R L RV Sbjct: 601 EREVIYTYSEQELHATLARLEQEGRSYREPIQRYKGLGEMDADQLAETTMDPRHRMLRRV 660 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 I ++ + + LMG+ R FI A Sbjct: 661 NI----AEVEAAERVFDLLMGSAVAPRKDFIISHA 691 >gi|269977250|ref|ZP_06184223.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1] gi|269934553|gb|EEZ91114.1| DNA gyrase subunit B [Mobiluncus mulieris 28-1] Length = 706 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 237/697 (34%), Positives = 341/697 (48%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 11 QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 70 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+PV+ P S +E++ T LHAGGKFD+ Y+++GGLHGVG SV Sbjct: 71 YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R I +F RG P S L K KV Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GTR+ F D +IF FD L + + ++L + + + P+ Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 244 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 E + GG Y++ ++ + + G ++ V+ Sbjct: 245 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 304 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH G AL + ++ + K + I Sbjct: 305 IALRWGAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKI 364 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D++ +++V + EPEF GQTK L S + V + + +L + Sbjct: 365 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 424 Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 LE ++ RL R +E RK A+ LP KL DC N +ELFIVEGD Sbjct: 425 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 484 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q +G + + + Sbjct: 485 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 544 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M LI ++ PPL RI +G Sbjct: 545 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 604 Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + Y + E+ + L ++G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 605 EFRYTYSEDQLHRELAYLARNGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 664 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + L +D LMG+ R FI + A+ +D Sbjct: 665 VDE-QPLHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 700 >gi|295836120|ref|ZP_06823053.1| DNA gyrase subunit B [Streptomyces sp. SPB74] gi|197695215|gb|EDY42148.1| DNA gyrase subunit B [Streptomyces sp. SPB74] Length = 707 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 232/687 (33%), Positives = 341/687 (49%), Gaps = 52/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + I+V+L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIDVTL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HADGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK---------------VRNKRGTR 206 VNALS L + V R ++ + F RG+P + + GTR Sbjct: 140 VNALSARLDIEVDRGGSVHATSFRRGVPGQFKGTGPDGAFEPTTGLRRVKRIPKTRTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + + D +IF A L + + A+L + + + E E E F + Sbjct: 200 VRYWADRQIFLKDAKLSLETLHQRARQTAFLVPGLTLVVRDEYGLGEGGAKGE-ESFRYD 258 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + ++++ +G+ + V+ A+ W Sbjct: 259 GGISEFCEYLARDKAVCDVLRLSGQGTFKETVPVLDEHGQMTPTEVVRDLGVDVALRWGT 318 Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 S+ N I T +GGTH +G A+TR + + R DD + Sbjct: 319 GYETTVRSFVNIIATPKGGTHVTGFERAVTRTVNDVLRGAKLLRVAEDDVVKDDALEGLT 378 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V N + +L +A V+++ Sbjct: 379 AVVTVRLAEPQFEGQTKEVLGTSAANRIVANVVAKELKAFLTSTKRDAKAQARAVLDKVV 438 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 439 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 498 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY K+I++ Sbjct: 499 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDLDAARYGKIILLV 558 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 559 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELSQPKKGQDKYVYTYSDRE 618 Query: 597 -KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ +L+ +K+ + K I R+KGLGEM A QL ET MD RTL R+ +N L Sbjct: 619 LRETLLDFERKNVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTLRRISMND----LDSA 674 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R +FI A+ +D Sbjct: 675 ERVFDLLMGNEVAPRKEFITNSAATLD 701 >gi|297162917|gb|ADI12629.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis BCW-1] Length = 703 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 236/702 (33%), Positives = 344/702 (49%), Gaps = 52/702 (7%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 +P A + +Y A + +LEGLE VR RPGMYIG +D + L H E+IDN++ Sbjct: 2 STLPVPAAGSRPQDGSDYTARHLMVLEGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNSV 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG + IEV L +G + V DNGRGIPV+N P+ S +EI T LHAGGKF Sbjct: 62 DEALAGACDHIEVVLHDDGSVEVTDNGRGIPVDNEPR-TGLSGVEIAYTKLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199 +Y SGGLHGVG SVVNALS L + V R + F RG P + Sbjct: 121 SYAASGGLHGVGASVVNALSARLDIEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQG 180 Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 + + GTR+ + D +IF A L + + A+L + + + Sbjct: 181 LRQTTKVPKPRTGTRVRYWADRQIFVKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGL 240 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295 E E E F F GG+ + + +R + F+G+ + Sbjct: 241 GEGGSKGE-ESFRFDGGISEFCEFLASDRPVCDVLRFSGQGTFKETVPVLDEHGRMTPTE 299 Query: 296 GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 T V+ A+ W S+ N I T +GGTH +G A+ + + + + R Sbjct: 300 VTRELGVDVALRWGTGYDTALRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRV 359 Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 DD + +++V + EP+F GQTK L + A+R V + +L Sbjct: 360 AEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTLISKELKAFLTSTK 419 Query: 413 IEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467 +A + V+E+ R+ + RKTA+ LP KLADC + +ELF Sbjct: 420 RDAAQQARVVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELF 479 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + Sbjct: 480 IVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT 539 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582 + + RY K+I+MTDADVDG+HI LLLT ++ M ++E +F PPL R+ Sbjct: 540 FDLDAARYGKIIMMTDADVDGSHIRILLLTLCHRYMRPMVEAGRVFAAVPPLHRVELIQP 599 Query: 583 TQGT-KSVYAHDEEH-KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 +G K VY + + + K+LE K+ + K I R+KGLGEM A QL ET MD RTL Sbjct: 600 KKGQDKYVYTYSDRELRDKLLEFQSKNIRYKDSIQRYKGLGEMDADQLAETTMDPRHRTL 659 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ ++ L+ + + LMG + R +FI A+ +D Sbjct: 660 RRINLSD----LEAAERVFDLLMGNEVAPRKEFIANSAATLD 697 >gi|157144341|ref|YP_001451660.1| DNA gyrase subunit B [Citrobacter koseri ATCC BAA-895] gi|157081546|gb|ABV11224.1| hypothetical protein CKO_00045 [Citrobacter koseri ATCC BAA-895] Length = 804 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N I Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|161505634|ref|YP_001572746.1| DNA gyrase subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866981|gb|ABX23604.1| hypothetical protein SARI_03810 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 804 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|188991959|ref|YP_001903969.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv. campestris str. B100] gi|167733719|emb|CAP51924.1| Topoisomerase IV subunit B [Xanthomonas campestris pv. campestris] Length = 673 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 247/685 (36%), Positives = 376/685 (54%), Gaps = 26/685 (3%) Query: 2 TDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDN-YDASSIRILEGLEPVRM 60 ++ + + S P ++ S + + + Y+A+ I +L GL+PV+ Sbjct: 6 SESNASIVSGARPGTERLSRAKNRPRPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKR 65 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMY TD +HL EVIDN++DE +AG+A +EV+L +G V D+GRG+PV+ Sbjct: 66 RPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDGSCEVSDDGRGMPVDM 122 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVNALS ++ + + R+ + Sbjct: 123 HPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEH 181 Query: 181 SQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 +F GI S LE V + GTR+ F DPK F F+ L + ++KA L Sbjct: 182 RMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCP 240 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 + + E++ +YF GL+ YL+ ++ +R L+ +++F G +K Sbjct: 241 GLTVKLHDE-------ATGEQDSWYFEDGLRDYLKGEMADRELLPADLFAGSLKKDTEI- 292 Query: 300 GTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISI 357 V+WA AW E SY N I T + GTH +GLR LT ++++ + R + + Sbjct: 293 --VDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKL 350 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D+ +LS+ + +P+F+GQTK +L S A +E A D F YL QN K Sbjct: 351 APEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEK 410 Query: 418 LLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + + I+R+ RL+ ++++ RK + LPGKLADC TELF+VEGDSAGGS Sbjct: 411 IAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGS 468 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AKQAR++ QA+LPLRGKILN S + ++++ +L A+GC LRY K Sbjct: 469 AKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGK 527 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 V+I+ DAD DG HIA+LL F Q L+ H+F+ PPLFR+ G + YA DEE K Sbjct: 528 VVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEK 587 Query: 598 QKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +L++ + KG+I ++RFKGLGEM QL+E+ + + R L+++ I+ + Sbjct: 588 TTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRSLMD 647 Query: 657 DSINKLMGTKADERFKFIQERASFI 681 L +A +R ++++ + Sbjct: 648 ML---LAKKRAGDRKQWLETKGDLA 669 >gi|297626463|ref|YP_003688226.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922228|emb|CBL56798.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 706 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 230/714 (32%), Positives = 331/714 (46%), Gaps = 58/714 (8%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKA 73 P SQ ++ + P A A Y+A ++ +LEGLE VR RP MYIG TD + Sbjct: 2 PDSQSTASQSTAKKSAPGKAA----QAGREYEAKNLLVLEGLEAVRKRPAMYIGSTDTRG 57 Query: 74 LHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEII 133 L H E+IDNA+DE +AG+ I+V L+ +G + V D GRGIPV+ P+ + + +E++ Sbjct: 58 LMHCLWEIIDNAVDEALAGFGRHIDVRLNADGSIHVADAGRGIPVDIEPR-THLTGVEVV 116 Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---- 189 T LHAGGKF +Y +GGLHGVG SVVNALS L V V R ++ F RG P Sbjct: 117 FTKLHAGGKFGAGSYTATGGLHGVGASVVNALSSRLDVEVDRNGHTWAMSFQRGKPGVFD 176 Query: 190 -----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 + + GTR+T+ PD +IF +A A +LL + ++L Sbjct: 177 GPGPSAGFTPGSGLRKTGRTAKGVTGTRVTYWPDRQIFLKQAQLSAEQLLDRARQTSFLV 236 Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----- 293 ++ + D+ P + F GG+ ++ + G Sbjct: 237 PGLRITVNDDR-----GEEPVETTFQHEGGISEFVDFLSVGEPITDVLRLQGSDHFVETV 291 Query: 294 -----------KKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRG 341 R V+ A+ W + S+ N I T +GGTH G L R Sbjct: 292 PELDENGAMTPTDVDRRLDVDVAVRWSNNFDTVERSFVNIIATPKGGTHVQGFERGLVRA 351 Query: 342 IKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 K +I DD++ +++V + EP+F GQTK L + R V + Sbjct: 352 FAAGLEGTRLLKSGEEVIKDDVLEGMTAVVTVRLPEPQFEGQTKEVLGTPPVTRLVARIV 411 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERS----EERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 +L V+E++ RL R R RK A+ +P KL D Sbjct: 412 ESELTEFLKSTKAATRAQARLVMEKAVNASRTRLAARAHRENQRRKNALESSSMPPKLKD 471 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +ELFIVEGDSA G+A +ARN QA+LP+RGKILNV A + N + Sbjct: 472 CRNADGERSELFIVEGDSALGTALRARNSEFQALLPIRGKILNVQKASVGDMLKNAECAS 531 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++Q +G + + + RY K+I M DAD DGAHI LL T F++ M ++E +F Sbjct: 532 IIQVVGAGSGKTFDVDQARYGKIIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRIFSA 591 Query: 576 SPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 PPL R +G K +Y + + Q+ E K G E R+KGLGEM A QL Sbjct: 592 VPPLHRFELTNPKKGMEKYIYTYSDPEYQRKAAELTKKGIHFKEPQRYKGLGEMDADQLA 651 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 +T M+ R L R+ ++ + D LMG R +FI E A +D+ Sbjct: 652 DTTMNPRHRLLRRITVDDAAGAA----DVFELLMGNNVAPRKEFIVEGAYQLDE 701 >gi|193216448|ref|YP_001999690.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1] gi|193001771|gb|ACF06986.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1] Length = 637 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 233/648 (35%), Positives = 350/648 (54%), Gaps = 32/648 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+AS +++L+GL+ VR RPGMYIG TD LHHL E++DNA+DE +AG+A I+V+L Sbjct: 2 SNYEASDLKVLKGLDAVRKRPGMYIGSTDITGLHHLVWEIVDNALDEALAGFATDIKVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV H K+ +E++ T LHAGGKFD Y+ SGGLHGVG SV Sbjct: 62 KKDDSVIVEDNGRGIPVSKH--GSGKTGVELVFTELHAGGKFDEGVYKTSGGLHGVGSSV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS++L V V R + F + + GT++ F PD IF Sbjct: 120 VNALSEKLIVKVYRDKKEYKTVFEQDKIIEGTNVVGPTTKH-GTKVQFWPDKTIFKK-TK 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F + + + + ++L +K ++ ++ E F G+K Y++ E ++ Sbjct: 178 FSSDIVKEKLREASFLIPNLKIHFNHEES-------GEAITFEAAEGIKEYIKFVGEGKN 230 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 ISS + T KK + + I S+ N + T +GGTHE+ + ALT+ Sbjct: 231 FISSIFYAKGTFKKIEMEIALVYTD---NYTENIYSFVNNVKTRDGGTHETAFKSALTKT 287 Query: 342 IKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I +YA K + DD+ + ++S+ I E EF GQTK KL +L+A+ VE+ Sbjct: 288 INEYASQHNLLKNKNNFEGDDVREGIIAVVSLKIPESILEFVGQTKDKLGTLEAREAVED 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR---KLRLPGKLAD 455 + F YL +N +++ K+L + + + R+ R R RK + K L GKL Sbjct: 348 FFSEKFGFYLNENKLDSDKILNKIKKSYDARMAARTARNEIRKIKNKLENKKILSGKLTP 407 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + ELF+VEGDSAGGSAK R+R+ QA+LPLRGK++N A I +N++I Sbjct: 408 AQTKNSSLKELFLVEGDSAGGSAKMGRDRNTQAILPLRGKVINTVKAKLTDILSNEEIAT 467 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ +G + ++ +Y K+IIMTDAD DGAHI LLLTFFY+ M LI+ +++ Sbjct: 468 IINTIGAGIGQDFNIKNSQYGKIIIMTDADTDGAHIQVLLLTFFYRYMKKLIDAGMVYIA 527 Query: 576 SPPLFRITQGT---KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PPL+++T K Y D++ + + ++ EI R+KGLGEM QL +T Sbjct: 528 LPPLYKLTVKGAKAKHFYVWDDDELRDLTSKY-----SNYEIQRYKGLGEMNPDQLWDTT 582 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R++LRV IN + T+ ++ LM + R +I F Sbjct: 583 MNPETRSILRVRINDEG----LTERNVTTLMSDDINARKLWINTYVDF 626 >gi|306818812|ref|ZP_07452534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] gi|304648498|gb|EFM45801.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] Length = 706 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 236/697 (33%), Positives = 340/697 (48%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 11 QDYSAHHLSVLEGLEAVRKRPAMYIGSTDQRGLMHCLWEIIDNSVDEALAGFCDHIEVFL 70 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+PV+ P S +E++ T LHAGGKFD+ Y+++GGLHGVG SV Sbjct: 71 YPDYSAEVRDNGRGVPVDTVP-GTGLSGVEVVYTKLHAGGKFDSGLYKVAGGLHGVGASV 129 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R I +F RG P S L K KV Sbjct: 130 VNALSARMDVQVDRGGDIHQLQFRRGEPGVFTDHEALSPNNPFAAFEDESKLTKLGKVSK 189 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GTR+ F D +IF FD L + + ++L + + + P+ Sbjct: 190 SRTGTRVRFWADFQIFPKSTAFDFESLKERARKTSFLVPGLCITVTDLR-----GEEPQS 244 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 E + GG Y++ ++ + + G ++ V+ Sbjct: 245 ETYLHKGGTVDYVEFLAPDKGITDTWQLVGSGTFQETVQVLNPKTGHLEPQELERTCEVD 304 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH G AL + ++ + K + I Sbjct: 305 IALRWGAGYDTVEQSYVNIIETPVGGTHIQGFESALVKTLRTEIQANSRKLKLGSKDNKI 364 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 +D++ +++V + EPEF GQTK L S + V + + +L + Sbjct: 365 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAAVKPIVSQVVTERLKAFLHSKKRDDKT 424 Query: 418 L----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 LE ++ RL R +E RK A+ LP KL DC N +ELFIVEGD Sbjct: 425 QVSALLEKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSNDVEKSELFIVEGD 484 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q +G + + + Sbjct: 485 SALGTAKSARNSEFQALFPIRGKILNVQKTGTAQMLGNAECAAIIQVIGAGSGRTFDLDQ 544 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M LI ++ PPL RI +G Sbjct: 545 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLIAAGRVYAAVPPLHRIQVNAKGKTPG 604 Query: 587 KSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + Y + E+ + L ++G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 605 EFRYTYSEDQLHRELAYLAENGRSYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 664 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + +D LMG+ R FI + A+ +D Sbjct: 665 VDE-QPFHTAEDVFEVLMGSAVPPRRDFIVQGAARLD 700 >gi|182435491|ref|YP_001823210.1| DNA topoisomerase IV subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464007|dbj|BAG18527.1| putative B subunit of topoisomerase IV [Streptomyces griseus subsp. griseus NBRC 13350] Length = 708 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 236/709 (33%), Positives = 345/709 (48%), Gaps = 53/709 (7%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 S NY A + +LEGLE VR RPGMYIG TD + L H Sbjct: 1 MTAETSVPSTAMLTGAGGDRDSSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLW 60 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 E+IDN++DE + GY + IEV L + + V DNGRGIPV+ PK S +E+++T LHA Sbjct: 61 EIIDNSVDEALGGYCDQIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHA 119 Query: 140 GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 GGKF +Y SGGLHGVG SVVNALS L V V R + S F RG+P E+ Sbjct: 120 GGKFGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSATHSISFRRGVPGMFTEQGPDS 179 Query: 200 ---------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTC 244 + + GTR+ + D +IF A + L + + A+L + Sbjct: 180 PFDPANGLRKGKRVPKTRTGTRVRYWADRQIFLKDARLNLDTLHQRARQTAFLVPGLTII 239 Query: 245 WSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------- 293 ++ + + E F F GG+ + + +++++ + +G Sbjct: 240 VRDERGLDGEGKTE--ETFRFDGGISEFCEYLAQDKAVCDVQRLSGTGTFKETVPVLDDR 297 Query: 294 -----KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 + T V+ A+ W S+ N I T +GGTH +G +LT+ + + Sbjct: 298 GHMTATEVTRELAVDIALRWGTGYDTTVRSFVNIIATPKGGTHVTGFERSLTKTVNEALR 357 Query: 348 LTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD 405 + R DD + +++V + EP+F GQTK L + A R V + Sbjct: 358 SAKMLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVAGVVAKELK 417 Query: 406 HYLVQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 +L +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 418 AFLTSTKRDAKAQARAVLEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDD 477 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q + Sbjct: 478 VERSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVI 537 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL Sbjct: 538 GAGSGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLH 597 Query: 581 RI-----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 RI +G K VY + + ++ L EF +K+ + K I R+KGLGEM A QL ET M Sbjct: 598 RIELVQPKKGQDKYVYTYSDNELRQTLLEFQRKNVRIKESIQRYKGLGEMDADQLAETTM 657 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D RTL R+ I L+ ++ + LMG + R +FI A+ +D Sbjct: 658 DPRHRTLRRINIGD----LESSEQVFDLLMGNEVAPRKEFITSSAATLD 702 >gi|260595833|ref|YP_003208404.1| DNA gyrase subunit B [Cronobacter turicensis z3032] gi|260215010|emb|CBA26674.1| DNA gyrase subunit B [Cronobacter turicensis z3032] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVSDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT++ F P + F + Sbjct: 121 SVVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-EQTGTQVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ +++ F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLVDKRD-------GKQDHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|170723865|ref|YP_001751553.1| DNA topoisomerase IV subunit B [Pseudomonas putida W619] gi|169761868|gb|ACA75184.1| DNA topoisomerase IV, B subunit [Pseudomonas putida W619] Length = 634 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 247/655 (37%), Positives = 364/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGTVGKRNTGTSVYFSPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVSEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRVTQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGAADL-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDLQGTTEIMDML---LAKKRAGDRKNWLETKGNLAEVL 633 >gi|283836132|ref|ZP_06355873.1| hypothetical protein CIT292_10552 [Citrobacter youngae ATCC 29220] gi|291068320|gb|EFE06429.1| DNA gyrase, B subunit [Citrobacter youngae ATCC 29220] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ + Q + G+P +PL + GT++ F P + F + Sbjct: 121 SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGET-EVTGTQVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE +K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|296100375|ref|YP_003610521.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054834|gb|ADF59572.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 803 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 227/566 (40%), Positives = 345/566 (60%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL +NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSDYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D++ + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|299768369|ref|YP_003730395.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1] gi|298698457|gb|ADI89022.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1] Length = 627 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFSLWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D++ + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHFTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624 >gi|16762490|ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767120|ref|NP_462735.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143978|ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161616952|ref|YP_001590917.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548876|ref|ZP_02342635.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992428|ref|ZP_02573526.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233389|ref|ZP_02658447.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235474|ref|ZP_02660532.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242054|ref|ZP_02666986.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260381|ref|ZP_02682354.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464835|ref|ZP_02698727.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818305|ref|ZP_02830305.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442844|ref|YP_002043085.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449732|ref|YP_002047868.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472695|ref|ZP_03078679.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737072|ref|YP_002116779.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262274|ref|ZP_03162348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244047|ref|YP_002217785.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387101|ref|ZP_03213713.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928757|ref|ZP_03219956.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354578|ref|YP_002228379.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859061|ref|YP_002245712.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424954|ref|ZP_03357704.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224585634|ref|YP_002639433.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913088|ref|ZP_04656925.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826402|ref|ZP_06545514.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61225454|sp|P0A2I3|GYRB_SALTY RecName: Full=DNA gyrase subunit B gi|61225456|sp|P0A2I4|GYRB_SALTI RecName: Full=DNA gyrase subunit B gi|25292820|pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422408|gb|AAL22694.1| DNA gyrase, subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504795|emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] gi|29139614|gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|149693011|emb|CAK55540.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693013|emb|CAK55541.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|161366316|gb|ABX70084.1| hypothetical protein SPAB_04773 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401507|gb|ACF61729.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408036|gb|ACF68255.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459059|gb|EDX47898.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712574|gb|ACF91795.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632426|gb|EDX50910.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240529|gb|EDY23149.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291517|gb|EDY30869.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938563|gb|ACH75896.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604199|gb|EDZ02744.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322190|gb|EDZ07388.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274359|emb|CAR39384.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325567|gb|EDZ13406.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329403|gb|EDZ16167.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332584|gb|EDZ19348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338996|gb|EDZ25760.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344661|gb|EDZ31425.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350152|gb|EDZ36783.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710864|emb|CAR35228.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470162|gb|ACN47992.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248976|emb|CBG26833.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996120|gb|ACY91005.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160368|emb|CBW19893.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914965|dbj|BAJ38939.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088256|emb|CBY98018.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225553|gb|EFX50608.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617252|gb|EFY14157.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619060|gb|EFY15946.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625127|gb|EFY21955.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630178|gb|EFY26949.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634396|gb|EFY31130.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635281|gb|EFY31996.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642908|gb|EFY39491.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647625|gb|EFY44112.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650569|gb|EFY46976.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656405|gb|EFY52697.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661585|gb|EFY57808.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661666|gb|EFY57885.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668220|gb|EFY64378.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672851|gb|EFY68959.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674968|gb|EFY71054.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683658|gb|EFY79671.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687734|gb|EFY83703.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132196|gb|ADX19626.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192051|gb|EFZ77286.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200533|gb|EFZ85611.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204959|gb|EFZ89944.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206702|gb|EFZ91659.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211774|gb|EFZ96607.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218636|gb|EGA03343.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220037|gb|EGA04507.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224807|gb|EGA09072.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232484|gb|EGA16586.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235259|gb|EGA19344.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241047|gb|EGA25084.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241403|gb|EGA25435.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248634|gb|EGA32564.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252067|gb|EGA35927.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258629|gb|EGA42292.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262340|gb|EGA45898.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268176|gb|EGA51652.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270590|gb|EGA54035.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625571|gb|EGE31916.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629714|gb|EGE36057.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|311898776|dbj|BAJ31184.1| putative type II topoisomerase [Kitasatospora setae KM-6054] Length = 706 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 236/703 (33%), Positives = 339/703 (48%), Gaps = 53/703 (7%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 SGE + +Y A + +LEGLE VR RPGMYIG TD + L H E+IDN+ Sbjct: 5 SGEKTGPSSLVTGEGGSDYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNS 64 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE + G+ + I+V L +G + V DNGRGIPV+ PK S +E+++T LHAGGKF Sbjct: 65 VDEALGGFCDRIDVLLHQDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGG 123 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--------------IPLS 191 +Y SGGLHGVG SVVNALS L V V R + F RG P S Sbjct: 124 GSYAASGGLHGVGASVVNALSARLDVEVDRSGATHAISFRRGTPGAYAGEGPDAAFEPGS 183 Query: 192 PLEKKEK-VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 + K+ K + + GTRI + D +IF A L + A+L + ++ Sbjct: 184 GMTKRGKFAKTRTGTRIRYWADRQIFLKDAKLSLESLHSRARQTAFLVPGLTIVVRDERL 243 Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------K 294 + E F + GG+ + + +R + G+ Sbjct: 244 TESEQVAE--ETFRYDGGISEFCEFLAPDRPISDVLRLRGEGTFKETVPVLDELGHMTPT 301 Query: 295 KGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR 353 + T V+ A+ W S+ N I T +GGTH +G L + + + + R Sbjct: 302 EVTRELGVDIALRWGAGYDTTQRSFVNIISTPKGGTHVTGFERQLAKTVNEALRAAKLLR 361 Query: 354 AISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411 DD +++V + EP+F GQTK L + A R V + +L Sbjct: 362 VAEDDITKDDAQEGLTAVITVRLAEPQFEGQTKEVLGTSAANRIVAAVVAKELKAFLTSA 421 Query: 412 PIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 + V+E+ R+ + RKTA+ LP KLADC + +EL Sbjct: 422 KKDEKLQARAVLEKVVAAARTRVAARQHKEAQRRKTALETSSLPAKLADCRSDDVERSEL 481 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS 526 FIVEGDSA G+AK ARN QA+LP+RGKILNV A + N + ++Q +G + Sbjct: 482 FIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKASVSDMLKNAECASIIQVIGAGSGR 541 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI---- 582 + + RY KVI M DADVDG+HI +LLLT F++ M ++EQ +F PPL RI Sbjct: 542 TFDIDQARYGKVIFMADADVDGSHIRTLLLTLFHRYMRPMVEQGRVFAAVPPLHRIELTN 601 Query: 583 -TQGT-KSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +G K Y + + ++ L +F+ G + K I R+KGLGEM A QL ET MD R Sbjct: 602 PKRGQEKYHYTYSDAELRRTLLQFQGKGLRWKDPIQRYKGLGEMDADQLAETTMDPRFRI 661 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L R+ + L+ + + + LMG R +FI + A+ +D Sbjct: 662 LRRINLGD----LESAEKTFDLLMGNDVAPRREFIVDSAATLD 700 >gi|331269786|ref|YP_004396278.1| DNA topoisomerase [Clostridium botulinum BKT015925] gi|329126336|gb|AEB76281.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium botulinum BKT015925] Length = 652 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 219/659 (33%), Positives = 345/659 (52%), Gaps = 36/659 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD + + LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY + + + L Sbjct: 10 NSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGDKVTLIL 69 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHGVG +V Sbjct: 70 NEDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAAV 128 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210 VNALS+ + V V ++ I+ Q+F G P++PLE + GTRITF+ Sbjct: 129 VNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDTND-TGTRITFK 187 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD ++F F + + Q A+ + + +++ + GL Sbjct: 188 PDKEVFST-TDFKFEVIDERLQELAFQNKGITLVIKDERKEETVEKE-----YRSERGLL 241 Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 +++ E+++ I E + EK+ + + E I + + + I SY N I T E G Sbjct: 242 DFIEYLNESKTPIHKEPLIFEGEKEVNSIKVYSEVCIQFTDSSTENIASYVNNIPTTESG 301 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE+G + +TR K++A ++ DDL IL V I P F GQTKTK Sbjct: 302 THETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQTKTK 361 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + +A + ++ N AT+++ + + R + +K + +K Sbjct: 362 LGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKKIGKG 421 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GK++ C+ + E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E Sbjct: 422 AAPLAGKVSICTLKKSDICEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLE 481 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++++ A+G Y EEDL+Y K+II++DADVDG HI +L +T+ Y+ M Sbjct: 482 NVLASEELKLFNTAIGTGVLENYNEEDLKYNKIIILSDADVDGYHIRTLWITYIYRYMKS 541 Query: 566 LIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 LI HL++ PPL+++ + K YA+ ++ + +E K I R+KGLG Sbjct: 542 LITNGHLYIALPPLYKVYKNAKNGEVRRYAYSDDELELAKKEIGKGAL----IQRYKGLG 597 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM QL +T ++ RTL ++ I + I+ LMG + R ++ + A F Sbjct: 598 EMNPDQLWDTTLNPETRTLQQITIED----AAKAEKMISLLMGDVVEPRRNYMYKYAEF 652 >gi|170766845|ref|ZP_02901298.1| DNA gyrase, B subunit [Escherichia albertii TW07627] gi|170124283|gb|EDS93214.1| DNA gyrase, B subunit [Escherichia albertii TW07627] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|197250721|ref|YP_002148773.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214424|gb|ACH51821.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|311277336|ref|YP_003939567.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1] gi|308746531|gb|ADO46283.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1] Length = 804 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 229/566 (40%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q ++ G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|226953356|ref|ZP_03823820.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244] gi|226835894|gb|EEH68277.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244] Length = 627 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 375/645 (58%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN + V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANQVTVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V R ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVAVQRHGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + DK EK + F GL YL +LE+R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ AT+L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPTLVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA D++ + IL+ K G +I+RFKGLGEM ASQL+ET MD N Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKNIK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R +++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624 >gi|307105660|gb|EFN53908.1| hypothetical protein CHLNCDRAFT_48978 [Chlorella variabilis] Length = 663 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 255/687 (37%), Positives = 366/687 (53%), Gaps = 53/687 (7%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 G+ D+ A AS +Y A I++L+GLEPVR RPGMYIG T ++ LHHL E++DNA Sbjct: 2 PGQTADADAPEAAEASTSYGAQQIQVLQGLEPVRKRPGMYIGSTGQRGLHHLVYEILDNA 61 Query: 86 MDEVIAGYANLIEVSLDGN-GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 +DEV AG+A + V L+ + G++T+ DNGRGIP + HP KS LE +LT LHAGGKF Sbjct: 62 IDEVQAGFATEVHVELNLDTGWVTISDNGRGIPTDVHP-VTGKSALETVLTVLHAGGKFG 120 Query: 145 NST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN- 201 + Y +SGGLHGVG+SVVNALSDEL V+V R + FSQ+FSRG+ SPL + Sbjct: 121 GDSSGYSVSGGLHGVGLSVVNALSDELEVSVWRGRSQFSQRFSRGVAQSPLVEAPAAAGA 180 Query: 202 -KRGTRITFRPDPKIF-------------GDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 KRGTR+ F D IF A FD + + A+L+ R + Sbjct: 181 PKRGTRVRFIYDDTIFSKTHTSPRPPLLPHCSATFDPDTIRSRLRELAFLNSRATIYFRA 240 Query: 248 DKEIAE----KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE 303 + P+ E F++ GGL Y++ ++ I + K Sbjct: 241 GNGSSNGAAAAEAEPDWEVFHYSGGLAEYVRFLNRDKVPIHEPLCFSK------------ 288 Query: 304 WAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDD 361 + I + N+I T +GGTH G + ALTR + + + ++ + Sbjct: 289 -QASGLRRGDTIIGFVNSIKTIDGGTHIDGTKAALTRTVNSLGRKLKAIKEGESNLAGEY 347 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + ++SV + PEF GQTKT+L + + +R VE + L P +L Sbjct: 348 IREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRRIVEGVVSSAVGEALEMEPTTFNTILAK 407 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 ++ + +K RE V RK+ + K LPGKLADCS TE+F+VEGDSAGGS KQ Sbjct: 408 AMQAFKAAEAAKKARELVRRKSVLTKSTLPGKLADCSSTNRAETEIFLVEGDSAGGSTKQ 467 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 AR+R QAVLPLRGKILN S K+ N +I +L+ LG + + +LRY K+II Sbjct: 468 ARDRRYQAVLPLRGKILNDDS----KLYKNNEIANLIVGLGLGLKGED-AVNLRYGKIII 522 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 +TDADVDGAHI +LLLTF ++ + E+ H+++ PPL+++ G ++ Y + EE + Sbjct: 523 LTDADVDGAHIRTLLLTFLFRYQRAIFEKGHVYVGVPPLYKLDVGRRAQYCYTEEELKAA 582 Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 L E + RFKGLGEM+ QL T ++ RTL ++ I+ + Sbjct: 583 LAELAPC---SYTMQRFKGLGEMMPEQLWSTTLNPETRTLRKLTIDD----AAEASHMFA 635 Query: 661 KLMGTKADERFKFIQERASF--IDDVG 685 LMG K R + I+ S ++++ Sbjct: 636 LLMGDKVGPRRELIERHGSRLALEELD 662 >gi|147108|gb|AAA24298.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110] Length = 601 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 239/614 (38%), Positives = 347/614 (56%), Gaps = 23/614 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A ++V Sbjct: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGIS Sbjct: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V V R +++ F G + L+ + GT + F PD + F D Sbjct: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F +RL + ++KA L V+ + + E + + + GL YL + Sbjct: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------QRWCYQDGLNDYLAEAVNG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + + F G V+WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 LPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L ++++ E R + + ++D+ +LSV +++P+FAGQTK +L S V Sbjct: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L QN A L E I ++ R+R ++V RK LPGKLADC Sbjct: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D+ Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+++ Sbjct: 465 SVAIGIDPDSDDL-SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI G + YA EE K+ +LE+ K+ KGK + RFKGLGEM QL+ET +D N Sbjct: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Query: 637 KRTLLRVEINKDLN 650 R L+++ I+ + + Sbjct: 583 TRRLVQLTIDDEDD 596 >gi|169634797|ref|YP_001708533.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii SDF] gi|169153589|emb|CAP02766.1| topoisomerase IV subunit B [Acinetobacter baumannii] Length = 627 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 374/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E VI ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMVISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|255526781|ref|ZP_05393681.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans P7] gi|255509509|gb|EET85849.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans P7] Length = 653 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 213/659 (32%), Positives = 339/659 (51%), Gaps = 36/659 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD +++ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ G+ + V L+ Sbjct: 11 YDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVILNK 70 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGLHGVG +VVN Sbjct: 71 DKSVTIIDNGRGIPTGIHP-VKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVVN 129 Query: 164 ALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFRPD 212 ALS + V + + I++Q+F G P++ L+ + GT++TF PD Sbjct: 130 ALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNTKE-TGTKVTFLPD 188 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +F + F + + Q A+ + + +E ++ GL + Sbjct: 189 KDVFSNT-EFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKE-----YHSERGLLDF 242 Query: 273 LQTKLENRSLISSEIFTGKTEKK--GTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTH 330 ++ E+++ + + + E++ G + I SY N I T E GTH Sbjct: 243 IEYLNESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTH 302 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 ESG + +TR K++ + ++ DDL I+ + I P F GQTKTKL Sbjct: 303 ESGFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLG 362 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + +A + + F ++ N A+ ++ I+ + R + +K E +K Sbjct: 363 NTEAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTA 422 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GK+A C+ +E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E + Sbjct: 423 PLAGKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENV 482 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++++ A+G Y+E+DL+Y K+IIM+DADVDG HI +L +T+ Y+ M +I Sbjct: 483 LGSEELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQII 542 Query: 568 EQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 HL++ PPL+++ + K YA+ +E +K ++ K I R+KGLGEM Sbjct: 543 SNGHLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGKGAL----IQRYKGLGEM 598 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 QL ET ++ RTL ++ I + ++ LMG R ++ + A F D Sbjct: 599 NPDQLWETTLNPETRTLQQITIED----AAKAEKMVSLLMGDVVAPRKNYMYKYAVFND 653 >gi|529464|gb|AAA91333.1| topoisomerase II subunit B [Mycoplasma gallisepticum] Length = 633 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 238/647 (36%), Positives = 355/647 (54%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+ I++L+GLEPVR RPGMYIG TD + LHHL E+ DNA+DE + G AN IEV Sbjct: 3 SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV + N ST++ + T LHAGGKFD+ Y++SGGLHGVG SV Sbjct: 63 KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L VTV R ++ + G + KK K GT I F PDP IF + Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKMGSSTKHGTIIQFWPDPTIFKN-IQ 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + ++L +K + + + F G+ YL+ EN+ Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 IS I +K G ++ E+ I S+ N++ T EGG+HE+G + A+ Sbjct: 235 TISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 I Y++ + N + DL +LSV + E + GQTK KL + + + V Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351 Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 L ++L +N +A +L+ +I+ ++E ++ K+ K+A + L GKL Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 Q E+F+VEGDSAGG+AK R++ QA+LPLRGK++NV + + + N++I+ Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ LGC + + ++L+Y K+IIMTDAD DGAHI LLLTFFY+ M +LIEQ +++ Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531 Query: 576 SPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PL++IT KS +A D+ ++ ++ G E+ R+KGLGEM + QL T M Sbjct: 532 LAPLYKITAKNSNKSAFAWDDYQLDELRTKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 D +KR L++V I + + ++ LMG A R +I E F Sbjct: 587 DPSKRQLIQVSI----QNAAQAERKVSILMGDDASIRKNWINENVDF 629 >gi|325271262|ref|ZP_08137804.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51] gi|324103599|gb|EGC00904.1| DNA topoisomerase IV subunit B [Pseudomonas sp. TJI-51] Length = 634 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ +++P+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD N R L+++ ++ + + L +A +R +++ + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDVQATCELMDKL---LAKKRAGDRKNWLETKGNLAE 631 >gi|26991593|ref|NP_747018.1| DNA topoisomerase IV subunit B [Pseudomonas putida KT2440] gi|24986682|gb|AAN70482.1|AE016689_10 DNA topoisomerase IV, B subunit [Pseudomonas putida KT2440] Length = 634 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 246/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ +++P+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD N R L+++ ++ + + L +A +R +++ + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631 >gi|331649525|ref|ZP_08350611.1| DNA gyrase, B subunit [Escherichia coli M605] gi|330908018|gb|EGH36537.1| DNA gyrase subunit B [Escherichia coli AA86] gi|331042023|gb|EGI14167.1| DNA gyrase, B subunit [Escherichia coli M605] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|262040463|ref|ZP_06013706.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042216|gb|EEW43244.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 351/574 (61%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L+K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILVKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|152972606|ref|YP_001337752.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330005216|ref|ZP_08305175.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3] gi|150957455|gb|ABR79485.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536348|gb|EGF62710.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|251787656|ref|YP_003002377.1| DNA gyrase subunit B [Dickeya zeae Ech1591] gi|247536277|gb|ACT04898.1| DNA gyrase, B subunit [Dickeya zeae Ech1591] Length = 803 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 227/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ I Q++ G P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKIHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + F++ GG+K +++ N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ANKADHFHYEGGIKAFVEYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F EK VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + D YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALDWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|58582592|ref|YP_201608.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427186|gb|AAW76223.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 673 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 246/673 (36%), Positives = 370/673 (54%), Gaps = 25/673 (3%) Query: 13 PPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEK 72 P + S K + S S + + Y+A+ I +L GL+PV+ RPGMY TD Sbjct: 18 PCTERLSRAKNRPSPHTCASFHVPTRCMNTRYNAADIEVLSGLDPVKRRPGMY---TDTA 74 Query: 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132 +HL EVIDN++DE +AG+A IEV+L +G V D+GRG+PV+ HP+ +E+ Sbjct: 75 RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIHPE-EKIPGVEL 133 Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192 ILT LHAGGKF+N Y SGGLHGVG+SVVNALS ++ + + R+ + +F G S Sbjct: 134 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASK 193 Query: 193 LEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 LE V + GTR+ F DPK F F+ L + ++KA L + + Sbjct: 194 LEVVGTVGKKNTGTRLRFWADPKYFDTP-KFNVRALRHLLRAKAVLCPGLTVKLHDE--- 249 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE 311 E++ +YF GL+ YL+ ++ ++ +++F G +K V+WA W E Sbjct: 250 ----ATGEQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEI---VDWAAGWVPE 302 Query: 312 NP-EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGI 369 SY N I T + GTH +GLR LT ++++ + R + + +D+ + Sbjct: 303 GELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRGVKLAPEDVWDRVTFV 362 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LS+ + +P+F+GQTK +L S A +E A D F YL QN K+ + I+R+ R Sbjct: 363 LSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASAR 422 Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 L+ ++++ RK + LPGKLADC TELF+VEGDSAGGSAKQAR++ QA+ Sbjct: 423 LK--TEKQIVRKKVTQGPALPGKLADCISQDLSRTELFLVEGDSAGGSAKQARDKDFQAI 480 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LPLRGKILN S + ++++ +L A+GC LRY KV+I+ DAD DG Sbjct: 481 LPLRGKILNTWEVASGSVLASEEVHNLAIAIGCDPGKDDI-TGLRYGKVVILADADSDGL 539 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG- 608 HIA+LL F Q L+ H+F+ PPLFR+ G + YA DEE K +L++ + Sbjct: 540 HIATLLTALFLQHFPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEKTTLLDKIAREKM 599 Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668 KG+I ++RFKGLGEM QL+E+ + + R L+++ I+ + L +A Sbjct: 600 KGQISVTRFKGLGEMNPQQLRESTIHPDTRRLVQLTIDDGEQTRLLMDML---LAKKRAS 656 Query: 669 ERFKFIQERASFI 681 +R ++++ + Sbjct: 657 DRKQWLETKGDLA 669 >gi|260557877|ref|ZP_05830090.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC 19606] gi|260408668|gb|EEX01973.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC 19606] Length = 627 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 257/645 (39%), Positives = 374/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + +F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPVFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|312967891|ref|ZP_07782103.1| DNA gyrase, B subunit [Escherichia coli 2362-75] gi|312287452|gb|EFR15360.1| DNA gyrase, B subunit [Escherichia coli 2362-75] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|320321905|gb|EFW78001.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea str. B076] Length = 634 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 244/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG+SVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGVSVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|256021283|ref|ZP_05435148.1| DNA gyrase subunit B [Shigella sp. D9] gi|331670543|ref|ZP_08371382.1| DNA gyrase, B subunit [Escherichia coli TA271] gi|331062605|gb|EGI34525.1| DNA gyrase, B subunit [Escherichia coli TA271] gi|332104866|gb|EGJ08212.1| DNA gyrase subunit B [Shigella sp. D9] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|169794326|ref|YP_001712119.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AYE] gi|213159099|ref|YP_002321097.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057] gi|215481883|ref|YP_002324065.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB307-0294] gi|294836665|ref|ZP_06781348.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6013113] gi|294841351|ref|ZP_06786034.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6014059] gi|294860381|ref|ZP_06798150.1| DNA topoisomerase IV subunit B [Acinetobacter sp. 6013150] gi|301345700|ref|ZP_07226441.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB056] gi|301596077|ref|ZP_07241085.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB059] gi|169147253|emb|CAM85112.1| topoisomerase IV subunit B [Acinetobacter baumannii AYE] gi|213058259|gb|ACJ43161.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057] gi|213985902|gb|ACJ56201.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB307-0294] gi|322509788|gb|ADX05242.1| Topoisomerase IV subunit B [Acinetobacter baumannii 1656-2] gi|323519801|gb|ADX94182.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii TCDC-AB0715] Length = 627 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 257/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|194431109|ref|ZP_03063402.1| DNA gyrase, B subunit [Shigella dysenteriae 1012] gi|194420564|gb|EDX36640.1| DNA gyrase, B subunit [Shigella dysenteriae 1012] gi|320180040|gb|EFW54982.1| DNA gyrase subunit B [Shigella boydii ATCC 9905] gi|332084055|gb|EGI89262.1| DNA gyrase, B subunit [Shigella dysenteriae 155-74] gi|332084889|gb|EGI90072.1| DNA gyrase, B subunit [Shigella boydii 5216-82] Length = 804 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|1546916|emb|CAA69221.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 804 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|331685423|ref|ZP_08386009.1| DNA gyrase, B subunit [Escherichia coli H299] gi|331077794|gb|EGI49006.1| DNA gyrase, B subunit [Escherichia coli H299] Length = 804 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|56415708|ref|YP_152783.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364636|ref|YP_002144273.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129965|gb|AAV79471.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096113|emb|CAR61709.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 804 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G +E A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|331675189|ref|ZP_08375942.1| DNA gyrase, B subunit [Escherichia coli TA280] gi|284923782|emb|CBG36880.1| DNA gyrase subunit B [Escherichia coli 042] gi|331067634|gb|EGI39036.1| DNA gyrase, B subunit [Escherichia coli TA280] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|82546037|ref|YP_409984.1| DNA gyrase subunit B [Shigella boydii Sb227] gi|187731654|ref|YP_001882467.1| DNA gyrase subunit B [Shigella boydii CDC 3083-94] gi|81247448|gb|ABB68156.1| DNA gyrase subunit B [Shigella boydii Sb227] gi|187428646|gb|ACD07920.1| DNA gyrase, B subunit [Shigella boydii CDC 3083-94] gi|320174827|gb|EFW49950.1| DNA gyrase subunit B [Shigella dysenteriae CDC 74-1112] gi|332089417|gb|EGI94521.1| DNA gyrase, B subunit [Shigella boydii 3594-74] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|71737102|ref|YP_272846.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482433|ref|ZP_05636474.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628173|ref|ZP_06461127.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649095|ref|ZP_06480438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|298484936|ref|ZP_07003034.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557655|gb|AAZ36866.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298160490|gb|EFI01513.1| Topoisomerase IV subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320330990|gb|EFW86964.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330865872|gb|EGH00581.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330984582|gb|EGH82685.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans str. M301315] Length = 634 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|271498582|ref|YP_003331607.1| DNA gyrase subunit B [Dickeya dadantii Ech586] gi|270342137|gb|ACZ74902.1| DNA gyrase, B subunit [Dickeya dadantii Ech586] Length = 803 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q++ G P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKLHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + F++ GG+K +++ N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLRDERE------ANKADHFHYEGGIKAFVEYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F EK VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + D YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDG 564 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|238897209|ref|YP_002921957.1| DNA gyrase subunit B [Klebsiella pneumoniae NTUH-K2044] gi|238549539|dbj|BAH65890.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 805 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 3 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 122 SVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 181 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 351 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804 >gi|215489039|ref|YP_002331470.1| DNA gyrase subunit B [Escherichia coli O127:H6 str. E2348/69] gi|215267111|emb|CAS11558.1| DNA gyrase, subunit B [Escherichia coli O127:H6 str. E2348/69] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHCQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|148654052|ref|YP_001281145.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1] gi|148573136|gb|ABQ95195.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1] Length = 629 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 370/646 (57%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A S+ +LEGLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V L Sbjct: 2 SNYTAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKTIKVQL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F ++ +EIILT LHAGGKF+ S Y++SGGLHGVGISV Sbjct: 59 HNDGSLSVEDDGRGMPTDIHPEF-KQTGIEIILTRLHAGGKFNTSNYQVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSP-LEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + + F G P++ +E + K+GT++ F D + F D Sbjct: 118 VNALSKRVEVTVWRDGSQYDIAFENGAPVTELVESVSSNKRKKGTKVRFWVD-ESFFDTP 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +L ++KA L+ + + + + + F G+ YL +L+ Sbjct: 177 KFSVKQLKHNLKAKAVLAAGLTIEFFDEINNDK-------VVWQFADGVVEYLNEQLDGL 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + E F E K R V +A++W + SY N I T +GGTH +GLR + Sbjct: 230 ETLPPEPFYFSYEAKEGERSGVTFALSWLPQGGTPIQESYVNLIPTAQGGTHVNGLRTGI 289 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E+ R + + +D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 290 LEALREFCEIHNLLPRNVKLTGEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQ 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ ++ E I ++ RL+ ++V RK + LPGKLADC Sbjct: 350 AQAKDAFSLWLNQHADLGAQIAELAISKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + G ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN + + ++++I D+ Sbjct: 408 GGVRDGAELFLVEGDSAGGSAKQARDRHFQAILPLRGKILNTWEVSPDTVLSSREIHDIA 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+KV I+ DAD DG HIA+L+ F + L++ HLF+ P Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA DE + IL G K +I+RFKGLGEM A QL+ET M+ + Sbjct: 527 PLYRIDIGKEVHYALDESELEHILSNVP--GNKKPQITRFKGLGEMSAEQLRETTMNPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ D++ ++ T ++ L+ K A +R +++ + + Sbjct: 585 RRLVQL----DMDDMQLTNSVMDMLLAKKRAGDRKTWLESKGDLAE 626 >gi|62182323|ref|YP_218740.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129956|gb|AAX67659.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716814|gb|EFZ08385.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V+D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVMDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|323155375|gb|EFZ41558.1| DNA gyrase, B subunit [Escherichia coli EPECa14] Length = 790 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERF 671 LMG + R Sbjct: 775 QLFTTLMGDAVEPRR 789 >gi|170680955|ref|YP_001746027.1| DNA gyrase subunit B [Escherichia coli SMS-3-5] gi|170518673|gb|ACB16851.1| DNA gyrase, B subunit [Escherichia coli SMS-3-5] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|110644042|ref|YP_671772.1| DNA gyrase subunit B [Escherichia coli 536] gi|117625975|ref|YP_859298.1| DNA gyrase subunit B [Escherichia coli APEC O1] gi|191170615|ref|ZP_03032168.1| DNA gyrase, B subunit [Escherichia coli F11] gi|218560774|ref|YP_002393687.1| DNA gyrase subunit B [Escherichia coli S88] gi|218691987|ref|YP_002400199.1| DNA gyrase subunit B [Escherichia coli ED1a] gi|227883920|ref|ZP_04001725.1| DNA gyrase subunit B [Escherichia coli 83972] gi|300983650|ref|ZP_07176691.1| DNA gyrase, B subunit [Escherichia coli MS 200-1] gi|300984543|ref|ZP_07177033.1| DNA gyrase, B subunit [Escherichia coli MS 45-1] gi|301047517|ref|ZP_07194593.1| DNA gyrase, B subunit [Escherichia coli MS 185-1] gi|331660041|ref|ZP_08360979.1| DNA gyrase, B subunit [Escherichia coli TA206] gi|110345634|gb|ABG71871.1| DNA gyrase subunit B [Escherichia coli 536] gi|115515099|gb|ABJ03174.1| DNA gyrase subunit B [Escherichia coli APEC O1] gi|190909423|gb|EDV69009.1| DNA gyrase, B subunit [Escherichia coli F11] gi|218367543|emb|CAR05328.1| DNA gyrase, subunit B [Escherichia coli S88] gi|218429551|emb|CAR10515.2| DNA gyrase, subunit B [Escherichia coli ED1a] gi|227839198|gb|EEJ49664.1| DNA gyrase subunit B [Escherichia coli 83972] gi|294493517|gb|ADE92273.1| DNA gyrase, B subunit [Escherichia coli IHE3034] gi|300300577|gb|EFJ56962.1| DNA gyrase, B subunit [Escherichia coli MS 185-1] gi|300306873|gb|EFJ61393.1| DNA gyrase, B subunit [Escherichia coli MS 200-1] gi|300408376|gb|EFJ91914.1| DNA gyrase, B subunit [Escherichia coli MS 45-1] gi|307555839|gb|ADN48614.1| DNA gyrase subunit B [Escherichia coli ABU 83972] gi|307628775|gb|ADN73079.1| DNA gyrase subunit B [Escherichia coli UM146] gi|315285496|gb|EFU44941.1| DNA gyrase, B subunit [Escherichia coli MS 110-3] gi|315292857|gb|EFU52209.1| DNA gyrase, B subunit [Escherichia coli MS 153-1] gi|323949942|gb|EGB45826.1| hypothetical protein ERKG_03785 [Escherichia coli H252] gi|323955007|gb|EGB50785.1| hypothetical protein ERLG_03725 [Escherichia coli H263] gi|324012740|gb|EGB81959.1| DNA gyrase, B subunit [Escherichia coli MS 60-1] gi|331053256|gb|EGI25289.1| DNA gyrase, B subunit [Escherichia coli TA206] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|300940884|ref|ZP_07155411.1| DNA gyrase, B subunit [Escherichia coli MS 21-1] gi|300454365|gb|EFK17858.1| DNA gyrase, B subunit [Escherichia coli MS 21-1] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|15833888|ref|NP_312661.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. Sakai] gi|30065007|ref|NP_839178.1| DNA gyrase subunit B [Shigella flexneri 2a str. 2457T] gi|49176395|ref|YP_026241.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|56480411|ref|NP_709501.2| DNA gyrase subunit B [Shigella flexneri 2a str. 301] gi|74314013|ref|YP_312432.1| DNA gyrase subunit B [Shigella sonnei Ss046] gi|89110314|ref|AP_004094.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. W3110] gi|110807611|ref|YP_691131.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401] gi|157155879|ref|YP_001465184.1| DNA gyrase subunit B [Escherichia coli E24377A] gi|157163179|ref|YP_001460497.1| DNA gyrase subunit B [Escherichia coli HS] gi|168748585|ref|ZP_02773607.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168753588|ref|ZP_02778595.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168759885|ref|ZP_02784892.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168766186|ref|ZP_02791193.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168772266|ref|ZP_02797273.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168779921|ref|ZP_02804928.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168785654|ref|ZP_02810661.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869] gi|168798734|ref|ZP_02823741.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508] gi|170018065|ref|YP_001723019.1| DNA gyrase subunit B [Escherichia coli ATCC 8739] gi|188496243|ref|ZP_03003513.1| DNA gyrase, B subunit [Escherichia coli 53638] gi|191165787|ref|ZP_03027625.1| DNA gyrase, B subunit [Escherichia coli B7A] gi|193063868|ref|ZP_03044955.1| DNA gyrase, B subunit [Escherichia coli E22] gi|193069227|ref|ZP_03050184.1| DNA gyrase, B subunit [Escherichia coli E110019] gi|194428131|ref|ZP_03060675.1| DNA gyrase, B subunit [Escherichia coli B171] gi|194435834|ref|ZP_03067937.1| DNA gyrase, B subunit [Escherichia coli 101-1] gi|195936320|ref|ZP_03081702.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC4024] gi|208808465|ref|ZP_03250802.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208812166|ref|ZP_03253495.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208821994|ref|ZP_03262314.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209921176|ref|YP_002295260.1| DNA gyrase subunit B [Escherichia coli SE11] gi|218556264|ref|YP_002389178.1| DNA gyrase subunit B [Escherichia coli IAI1] gi|218697421|ref|YP_002405088.1| DNA gyrase subunit B [Escherichia coli 55989] gi|238902789|ref|YP_002928585.1| DNA gyrase, subunit B [Escherichia coli BW2952] gi|253771439|ref|YP_003034270.1| DNA gyrase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163650|ref|YP_003046758.1| DNA gyrase subunit B [Escherichia coli B str. REL606] gi|254795702|ref|YP_003080539.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. TW14359] gi|256025570|ref|ZP_05439435.1| DNA gyrase subunit B [Escherichia sp. 4_1_40B] gi|260846516|ref|YP_003224294.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009] gi|260857890|ref|YP_003231781.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368] gi|260870430|ref|YP_003236832.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128] gi|261225852|ref|ZP_05940133.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK2000] gi|261258897|ref|ZP_05951430.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK966] gi|291285118|ref|YP_003501936.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615] gi|293417172|ref|ZP_06659799.1| hypothetical protein ECDG_04325 [Escherichia coli B185] gi|293464023|ref|ZP_06664437.1| hypothetical protein ECCG_04105 [Escherichia coli B088] gi|300815054|ref|ZP_07095279.1| DNA gyrase, B subunit [Escherichia coli MS 107-1] gi|300824316|ref|ZP_07104432.1| DNA gyrase, B subunit [Escherichia coli MS 119-7] gi|300903026|ref|ZP_07120968.1| DNA gyrase, B subunit [Escherichia coli MS 84-1] gi|300917471|ref|ZP_07134131.1| DNA gyrase, B subunit [Escherichia coli MS 115-1] gi|300925523|ref|ZP_07141398.1| DNA gyrase, B subunit [Escherichia coli MS 182-1] gi|300932330|ref|ZP_07147598.1| DNA gyrase, B subunit [Escherichia coli MS 187-1] gi|301020912|ref|ZP_07184967.1| DNA gyrase, B subunit [Escherichia coli MS 69-1] gi|301305955|ref|ZP_07212037.1| DNA gyrase, B subunit [Escherichia coli MS 124-1] gi|301325009|ref|ZP_07218559.1| DNA gyrase, B subunit [Escherichia coli MS 78-1] gi|301644371|ref|ZP_07244372.1| DNA gyrase, B subunit [Escherichia coli MS 146-1] gi|307140399|ref|ZP_07499755.1| DNA gyrase subunit B [Escherichia coli H736] gi|307313232|ref|ZP_07592857.1| DNA gyrase, B subunit [Escherichia coli W] gi|309795752|ref|ZP_07690167.1| DNA gyrase, B subunit [Escherichia coli MS 145-7] gi|312972009|ref|ZP_07786183.1| DNA gyrase, B subunit [Escherichia coli 1827-70] gi|331644423|ref|ZP_08345552.1| DNA gyrase, B subunit [Escherichia coli H736] gi|331655359|ref|ZP_08356358.1| DNA gyrase, B subunit [Escherichia coli M718] gi|331665349|ref|ZP_08366250.1| DNA gyrase, B subunit [Escherichia coli TA143] gi|331679797|ref|ZP_08380467.1| DNA gyrase, B subunit [Escherichia coli H591] gi|84028819|sp|P0AES7|GYRB_ECO57 RecName: Full=DNA gyrase subunit B gi|84028820|sp|P0AES6|GYRB_ECOLI RecName: Full=DNA gyrase subunit B gi|84028821|sp|P0AES8|GYRB_SHIFL RecName: Full=DNA gyrase subunit B gi|41646|emb|CAA27871.1| unnamed protein product [Escherichia coli K-12] gi|13364109|dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7 str. Sakai] gi|30043268|gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] gi|48994957|gb|AAT48201.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|56383962|gb|AAN45208.2| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 301] gi|73857490|gb|AAZ90197.1| DNA gyrase subunit B [Shigella sonnei Ss046] gi|85676345|dbj|BAE77595.1| DNA gyrase, subunit B [Escherichia coli str. K12 substr. W3110] gi|110617159|gb|ABF05826.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401] gi|157068859|gb|ABV08114.1| DNA gyrase, B subunit [Escherichia coli HS] gi|157077909|gb|ABV17617.1| DNA gyrase, B subunit [Escherichia coli E24377A] gi|169752993|gb|ACA75692.1| DNA gyrase, B subunit [Escherichia coli ATCC 8739] gi|187771557|gb|EDU35401.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188016891|gb|EDU55013.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|188491442|gb|EDU66545.1| DNA gyrase, B subunit [Escherichia coli 53638] gi|189002544|gb|EDU71530.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189359308|gb|EDU77727.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189364475|gb|EDU82894.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189369611|gb|EDU88027.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189374237|gb|EDU92653.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869] gi|189378801|gb|EDU97217.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508] gi|190904111|gb|EDV63822.1| DNA gyrase, B subunit [Escherichia coli B7A] gi|192930583|gb|EDV83190.1| DNA gyrase, B subunit [Escherichia coli E22] gi|192957551|gb|EDV87997.1| DNA gyrase, B subunit [Escherichia coli E110019] gi|194413889|gb|EDX30167.1| DNA gyrase, B subunit [Escherichia coli B171] gi|194425377|gb|EDX41361.1| DNA gyrase, B subunit [Escherichia coli 101-1] gi|208728266|gb|EDZ77867.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208733443|gb|EDZ82130.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208742117|gb|EDZ89799.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209754140|gb|ACI75377.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754142|gb|ACI75378.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754144|gb|ACI75379.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754146|gb|ACI75380.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209914435|dbj|BAG79509.1| DNA gyrase subunit B [Escherichia coli SE11] gi|218354153|emb|CAV00752.1| DNA gyrase, subunit B [Escherichia coli 55989] gi|218363033|emb|CAR00672.1| DNA gyrase, subunit B [Escherichia coli IAI1] gi|222035413|emb|CAP78158.1| DNA gyrase subunit B [Escherichia coli LF82] gi|238860819|gb|ACR62817.1| DNA gyrase, subunit B [Escherichia coli BW2952] gi|242379238|emb|CAQ34043.1| DNA gyrase, subunit B, subunit of DNA gyrase [Escherichia coli BL21(DE3)] gi|253322483|gb|ACT27085.1| DNA gyrase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975551|gb|ACT41222.1| DNA gyrase subunit B [Escherichia coli B str. REL606] gi|253979707|gb|ACT45377.1| DNA gyrase subunit B [Escherichia coli BL21(DE3)] gi|254595102|gb|ACT74463.1| DNA gyrase, subunit B [Escherichia coli O157:H7 str. TW14359] gi|257756539|dbj|BAI28041.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368] gi|257761663|dbj|BAI33160.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009] gi|257766786|dbj|BAI38281.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128] gi|260447283|gb|ACX37705.1| DNA gyrase, B subunit [Escherichia coli DH1] gi|281603074|gb|ADA76058.1| DNA gyrase subunit B [Shigella flexneri 2002017] gi|290764991|gb|ADD58952.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615] gi|291321655|gb|EFE61091.1| hypothetical protein ECCG_04105 [Escherichia coli B088] gi|291431203|gb|EFF04196.1| hypothetical protein ECDG_04325 [Escherichia coli B185] gi|300398379|gb|EFJ81917.1| DNA gyrase, B subunit [Escherichia coli MS 69-1] gi|300404932|gb|EFJ88470.1| DNA gyrase, B subunit [Escherichia coli MS 84-1] gi|300415275|gb|EFJ98585.1| DNA gyrase, B subunit [Escherichia coli MS 115-1] gi|300418363|gb|EFK01674.1| DNA gyrase, B subunit [Escherichia coli MS 182-1] gi|300459916|gb|EFK23409.1| DNA gyrase, B subunit [Escherichia coli MS 187-1] gi|300523203|gb|EFK44272.1| DNA gyrase, B subunit [Escherichia coli MS 119-7] gi|300531946|gb|EFK53008.1| DNA gyrase, B subunit [Escherichia coli MS 107-1] gi|300838806|gb|EFK66566.1| DNA gyrase, B subunit [Escherichia coli MS 124-1] gi|300848103|gb|EFK75863.1| DNA gyrase, B subunit [Escherichia coli MS 78-1] gi|301077312|gb|EFK92118.1| DNA gyrase, B subunit [Escherichia coli MS 146-1] gi|306906915|gb|EFN37424.1| DNA gyrase, B subunit [Escherichia coli W] gi|308120631|gb|EFO57893.1| DNA gyrase, B subunit [Escherichia coli MS 145-7] gi|309704146|emb|CBJ03493.1| DNA gyrase subunit B [Escherichia coli ETEC H10407] gi|310334386|gb|EFQ00591.1| DNA gyrase, B subunit [Escherichia coli 1827-70] gi|312948266|gb|ADR29093.1| DNA gyrase subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|313647707|gb|EFS12155.1| DNA gyrase, B subunit [Shigella flexneri 2a str. 2457T] gi|315063005|gb|ADT77332.1| DNA gyrase, subunit B [Escherichia coli W] gi|315138283|dbj|BAJ45442.1| DNA gyrase subunit B [Escherichia coli DH1] gi|315254614|gb|EFU34582.1| DNA gyrase, B subunit [Escherichia coli MS 85-1] gi|315618595|gb|EFU99181.1| DNA gyrase, B subunit [Escherichia coli 3431] gi|320191201|gb|EFW65851.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC1212] gi|320201273|gb|EFW75854.1| DNA gyrase subunit B [Escherichia coli EC4100B] gi|320639424|gb|EFX09039.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. G5101] gi|320655479|gb|EFX23414.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661105|gb|EFX28541.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320666231|gb|EFX33237.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323161049|gb|EFZ46968.1| DNA gyrase, B subunit [Escherichia coli E128010] gi|323164689|gb|EFZ50484.1| DNA gyrase, B subunit [Shigella sonnei 53G] gi|323173317|gb|EFZ58946.1| DNA gyrase, B subunit [Escherichia coli LT-68] gi|323177711|gb|EFZ63295.1| DNA gyrase, B subunit [Escherichia coli 1180] gi|323182494|gb|EFZ67898.1| DNA gyrase, B subunit [Escherichia coli 1357] gi|323189566|gb|EFZ74846.1| DNA gyrase, B subunit [Escherichia coli RN587/1] gi|323376401|gb|ADX48669.1| DNA gyrase, B subunit [Escherichia coli KO11] gi|323934950|gb|EGB31328.1| hypothetical protein ERCG_03773 [Escherichia coli E1520] gi|323939117|gb|EGB35331.1| hypothetical protein ERDG_04214 [Escherichia coli E482] gi|323944171|gb|EGB40251.1| hypothetical protein EREG_04262 [Escherichia coli H120] gi|323971176|gb|EGB66422.1| hypothetical protein ERHG_02793 [Escherichia coli TA007] gi|324018433|gb|EGB87652.1| DNA gyrase, B subunit [Escherichia coli MS 117-3] gi|324115949|gb|EGC09875.1| hypothetical protein ERBG_04036 [Escherichia coli E1167] gi|326337252|gb|EGD61087.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1044] gi|326341623|gb|EGD65412.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1125] gi|331036717|gb|EGI08943.1| DNA gyrase, B subunit [Escherichia coli H736] gi|331047374|gb|EGI19452.1| DNA gyrase, B subunit [Escherichia coli M718] gi|331057859|gb|EGI29845.1| DNA gyrase, B subunit [Escherichia coli TA143] gi|331072969|gb|EGI44294.1| DNA gyrase, B subunit [Escherichia coli H591] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|209754138|gb|ACI75376.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|320644867|gb|EFX13903.1| DNA gyrase subunit B [Escherichia coli O157:H- str. 493-89] gi|320650131|gb|EFX18627.1| DNA gyrase subunit B [Escherichia coli O157:H- str. H 2687] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|251793709|ref|YP_003008439.1| DNA gyrase subunit B [Aggregatibacter aphrophilus NJ8700] gi|247535106|gb|ACS98352.1| DNA gyrase, B subunit [Aggregatibacter aphrophilus NJ8700] Length = 806 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 232/570 (40%), Positives = 351/570 (61%), Gaps = 19/570 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + +NY A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + Sbjct: 2 STNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q +S G P +PL + N+ GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPKAPLAVIGET-NQTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V ++ E + F++ GG++ +++ Sbjct: 180 FTNI-EFEYDTLAKRLRELSFLNSGVSIRLVDERNGKE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ I + F EK G VE A+ W + I + N I +GGTH +G Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR + Y E K ++ DD V ++SV + +P+F+ QTK KLVS + Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ + + YL++NP + ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVSKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 ++++ PPL+++ +G + Y D+E + Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + I R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAIDWLMKESRRGLLIQRYKGLGEMNPEQLWETTMDPNSRRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805 >gi|306815948|ref|ZP_07450086.1| DNA gyrase subunit B [Escherichia coli NC101] gi|305850344|gb|EFM50801.1| DNA gyrase subunit B [Escherichia coli NC101] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLLDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|2160009|dbj|BAA20341.1| DNA gyrase subunit B [Escherichia coli] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ NR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGGNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPERCRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|293413153|ref|ZP_06655819.1| hypothetical protein ECEG_04465 [Escherichia coli B354] gi|291468286|gb|EFF10781.1| hypothetical protein ECEG_04465 [Escherichia coli B354] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|218551229|ref|YP_002385021.1| DNA gyrase subunit B [Escherichia fergusonii ATCC 35469] gi|218358771|emb|CAQ91428.1| DNA gyrase, subunit B [Escherichia fergusonii ATCC 35469] gi|323965760|gb|EGB61211.1| hypothetical protein ERJG_02832 [Escherichia coli M863] gi|323975234|gb|EGB70338.1| hypothetical protein ERFG_03936 [Escherichia coli TW10509] gi|324111596|gb|EGC05577.1| hypothetical protein ERIG_03892 [Escherichia fergusonii B253] gi|325499506|gb|EGC97365.1| DNA gyrase subunit B [Escherichia fergusonii ECD227] gi|327250842|gb|EGE62544.1| DNA gyrase, B subunit [Escherichia coli STEC_7v] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|218702548|ref|YP_002410177.1| DNA gyrase subunit B [Escherichia coli IAI39] gi|218372534|emb|CAR20409.1| DNA gyrase, subunit B [Escherichia coli IAI39] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|323959764|gb|EGB55414.1| hypothetical protein ERGG_03715 [Escherichia coli H489] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FERALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|320185536|gb|EFW60302.1| DNA gyrase subunit B [Shigella flexneri CDC 796-83] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|293407339|ref|ZP_06651261.1| gyrB [Escherichia coli FVEC1412] gi|298383080|ref|ZP_06992675.1| DNA gyrase subunit B [Escherichia coli FVEC1302] gi|300896028|ref|ZP_07114589.1| DNA gyrase, B subunit [Escherichia coli MS 198-1] gi|291425630|gb|EFE98666.1| gyrB [Escherichia coli FVEC1412] gi|298276916|gb|EFI18434.1| DNA gyrase subunit B [Escherichia coli FVEC1302] gi|300360088|gb|EFJ75958.1| DNA gyrase, B subunit [Escherichia coli MS 198-1] Length = 804 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|66043818|ref|YP_233659.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae B728a] gi|302189665|ref|ZP_07266338.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae 642] gi|63254525|gb|AAY35621.1| Gram negative topoisomerase IV, subunit B [Pseudomonas syringae pv. syringae B728a] Length = 634 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 368/656 (56%), Gaps = 29/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|301510004|ref|ZP_07235241.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB058] Length = 627 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 257/645 (39%), Positives = 372/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLAYQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|294660440|ref|NP_853202.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. R(low)] gi|33860191|sp|Q59526|PARE_MYCGA RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B; Short=TopIIB gi|284812100|gb|AAP56770.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. R(low)] gi|284930684|gb|ADC30623.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. R(high)] Length = 633 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 236/647 (36%), Positives = 354/647 (54%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+ I++L+GLEPVR RPGMYIG TD + LHHL E+ DNA+DE + G AN IEV Sbjct: 3 SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV + N ST++ + T LHAGGKFD+ Y++SGGLHGVG SV Sbjct: 63 KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L VTV R ++ + G + KK K GT + F PDP IF + Sbjct: 122 VNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTIFKN-IQ 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + ++L +K + + + F G+ YL+ EN+ Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 IS I +K G ++ E+ I S+ N++ T EGG+HE+G + A+ Sbjct: 235 SISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 I Y++ + N + DL +LSV + E + GQTK KL + + + V Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351 Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 L ++L +N +A +L+ +I+ ++E ++ K+ K+A + L GKL Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 Q E+F+VEGDSAGG+AK R++ QA+LPLRGK++NV + + + N++I+ Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ LGC + + ++L+Y K+IIMTDAD DGAHI LLLTFFY+ M +LIEQ +++ Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531 Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PL++I KS +A D+ ++ ++ G E+ R+KGLGEM + QL T M Sbjct: 532 LAPLYKISAKNSNKSAFAWDDYQLDELRTKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 D +KR L++V I + + ++ LMG A R +I E F Sbjct: 587 DPSKRQLIQVSI----QNAAQAERKVSILMGDDASIRKNWINENVDF 629 >gi|295095337|emb|CBK84427.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 803 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 348/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D++ + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|28627817|gb|AAN75469.1| topoisomerase II subunit B [Streptomyces roseochromogenes subsp. oscitans] Length = 702 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 235/701 (33%), Positives = 345/701 (49%), Gaps = 51/701 (7%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 +P A + +Y A + +LEGLE VR RPGMYIG +D + L H E+IDNA+ Sbjct: 2 STLPAPAAGSRPQDGSDYTARHLMVLEGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNAV 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG + IEV L +G + V DNGRGIPV+ P+ S +EI T LHAGGKF Sbjct: 62 DEALAGACDYIEVILHDDGSVEVTDNGRGIPVDTEPR-TGLSGVEIAYTKLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199 +Y SGGLHGVG SVVNALS L V V R + F RG P + Sbjct: 121 SYAASGGLHGVGASVVNALSARLDVEVDRHGRTHAISFRRGTPGTYTGPGPDAPFTPAQG 180 Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 +++ GTR+ + D + F A L + + A+L + + + Sbjct: 181 LRQTTKIPKSRTGTRVRYWADRQSFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEFGL 240 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295 E E E F F GG+ + + + + F+G+ + Sbjct: 241 GEGGSKGE-ESFRFDGGISEFCEFLASDTPVCDILRFSGQGTFKETVPVLDEHGQMTPTE 299 Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 T V+ A+ W S+ N I T +GGTH +G A+ + + + + R Sbjct: 300 VTRELGVDVALRWGTGYDTTVRSFVNIIATPKGGTHVAGFEQAVGKTLNEVLRAKKLLRV 359 Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 DD + +++V + EP+F GQTK L + A+R V N + +L Sbjct: 360 AEDDIAKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISKELKAFLTSTK 419 Query: 413 IEATKLLEWVIER----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFI 468 +A + V+E+ + R+ R+ ++ RK+A+ LP KLADC + +ELFI Sbjct: 420 RDAAQQARVVMEKAVAAARTRIAARQHKDAQRKSALESSSLPAKLADCRSDDVDRSELFI 479 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + + Sbjct: 480 VEGDSALGTAKLARNSEFQALLPIRGKILNVQRSSVSDMLKNAECGAIIQVIGAGSGRTF 539 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----T 583 + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 540 DIDTARYRKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRIELVQPR 599 Query: 584 QGTKSV-YAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +G + Y + + + L EF+ G + K + R+KGLGEM A QL ET MD RTL Sbjct: 600 KGQERYVYTYSDRELRDKLMEFQSKGIRYKDSVQRYKGLGEMDADQLAETTMDPRHRTLR 659 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ + L+ + + LMG R +FI A+ +D Sbjct: 660 RINLTD----LEAAEGVFDLLMGNDVAPRKEFITSSAATLD 696 >gi|315296897|gb|EFU56185.1| DNA gyrase, B subunit [Escherichia coli MS 16-3] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|302132290|ref|ZP_07258280.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 634 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTEFLRLPDEPFCGSFSGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRVTQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|218707345|ref|YP_002414864.1| DNA gyrase subunit B [Escherichia coli UMN026] gi|218434442|emb|CAR15370.1| DNA gyrase, subunit B [Escherichia coli UMN026] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEN-------HFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|320193755|gb|EFW68388.1| DNA gyrase subunit B [Escherichia coli WV_060327] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|26250440|ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] gi|91213221|ref|YP_543207.1| DNA gyrase subunit B [Escherichia coli UTI89] gi|237703499|ref|ZP_04533980.1| subunit B [Escherichia sp. 3_2_53FAA] gi|26110870|gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073] gi|91074795|gb|ABE09676.1| DNA gyrase subunit B [Escherichia coli UTI89] gi|226902763|gb|EEH89022.1| subunit B [Escherichia sp. 3_2_53FAA] Length = 805 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 3 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 122 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 181 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 351 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804 >gi|283787601|ref|YP_003367466.1| DNA gyrase subunit B [Citrobacter rodentium ICC168] gi|282951055|emb|CBG90733.1| DNA gyrase subunit B [Citrobacter rodentium ICC168] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKIHRQIYVHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|166712481|ref|ZP_02243688.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzicola BLS256] Length = 629 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ + Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKVAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625 >gi|82779228|ref|YP_405577.1| DNA gyrase subunit B [Shigella dysenteriae Sd197] gi|81243376|gb|ABB64086.1| DNA gyrase subunit B [Shigella dysenteriae Sd197] gi|281180753|dbj|BAI57083.1| DNA gyrase subunit B [Escherichia coli SE15] gi|324008035|gb|EGB77254.1| DNA gyrase, B subunit [Escherichia coli MS 57-2] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|209396545|ref|YP_002273225.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|217325601|ref|ZP_03441685.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|254038916|ref|ZP_04872968.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|209157945|gb|ACI35378.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|217321822|gb|EEC30246.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|226838881|gb|EEH70908.1| conserved hypothetical protein [Escherichia sp. 1_1_43] Length = 805 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 3 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 122 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 181 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 351 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 564 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAANID 804 >gi|290547|gb|AAA62050.1| DNA gyrase, subunit B [Escherichia coli] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAPRRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRXFIEENALKAANID 803 >gi|33152015|ref|NP_873368.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP] gi|33148237|gb|AAP95757.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP] Length = 638 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 249/650 (38%), Positives = 367/650 (56%), Gaps = 29/650 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A I +L+ LEPV++RPGMY TD +HL EVIDN++DE ++G+A I+V L Sbjct: 4 KRYGADQITVLKDLEPVQLRPGMY---TDTSRPNHLAQEVIDNSVDEALSGFATQIDVIL 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + L V+DNGRG+PV+ H S +E+ILT LHAGGKF N Y SGGLHGVGISV Sbjct: 61 HSDNSLEVIDNGRGMPVDIHS-TEQISGVELILTKLHAGGKFSNKNYTFSGGLHGVGISV 119 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS+++ + + R I+ F+ G L + + GT + F P+PK F Sbjct: 120 VNALSEQVKIKIKRDGNIYQIAFANGAKTEELHVVGSCAKKQTGTSVHFYPNPKYFDSPR 179 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ ++ +E +Y+ GL YL L Sbjct: 180 -FSVSRLRHLLRAKAVLCPKLTINFTDHINHN-------QESWYYEDGLADYLSEALAET 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 232 ESLPNPPFIGNVTSETE---AVSWALTWLPEGGELLAESYVNLIPTAQGGTHVNGLRNGL 288 Query: 339 TRGIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + I ++ E+ + I + +DD+ +LS+ ++EP+FAGQTK +L S A V+ Sbjct: 289 LKAIVEFCEIHNLLLKGIKLTADDVWNRCAYVLSLKMQEPQFAGQTKERLSSRQASSYVD 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N L++ F +L QN + E I ++ RLR ++V RK + LPGKLADC+ Sbjct: 349 NTLKNAFSLWLNQNVQVGKSIAEMAIASAQSRLR--AAKKVVRKKLVSGPALPGKLADCT 406 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S+++ +Q++ D+ Sbjct: 407 AQDLTRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWEVSSDQVLASQEVHDIA 466 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + R ++LRY K+ I+ DAD DG HIA+LL F + +L+ Q H+++ P Sbjct: 467 VAMGIDPDND-RLDELRYGKICILADADSDGLHIATLLCALFLRHFPNLVRQGHVYVAMP 525 Query: 578 PLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE K+ IL H K K + RFKGLGEM SQL+ET MD + Sbjct: 526 PLYRIDIGKDEVHYALDEVEKEAILARL-AHKKAKPNVQRFKGLGEMNPSQLRETTMDPS 584 Query: 637 KRTLLRVEINKDLNSLK----DTQDSINKLMGTK-ADERFKFIQERASFI 681 R L+++ ++ + +T ++ L+ K +++R +++Q+R + Sbjct: 585 TRRLVQLVLDDSEEDQQDDALNTFAIMDMLLAKKRSEDRKQWLQKRGNEA 634 >gi|119714278|ref|YP_921243.1| DNA gyrase subunit B [Nocardioides sp. JS614] gi|119534939|gb|ABL79556.1| DNA gyrase subunit B [Nocardioides sp. JS614] Length = 711 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 241/728 (33%), Positives = 370/728 (50%), Gaps = 61/728 (8%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D+ P ++ + E D +YDAS+I++LEGLE VR Sbjct: 1 MSDE-------TPIENPAEGGSGTAAAEATDRRPNGV-----DYDASAIQVLEGLEAVRK 48 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T E+ LHHL E++DNA+DE +AGY + I ++L +G + V DNGRGIP Sbjct: 49 RPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDRIVLTLLADGGIRVEDNGRGIPTGT 108 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 P L + LT LHAGGKF Y++SGGLHGVG+SVVNALS L V + ++ Sbjct: 109 APGQE-LPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALSTRLVAEVKNRGHLW 167 Query: 181 SQKFSRGIPLSPLE--KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 Q FS G+P LE + + GT IT+ P IF + + A+L+ Sbjct: 168 RQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTH-SLETITSRIREYAFLN 226 Query: 239 GRVKTCWSCDK--------EIAEKYGIPEK---------------------EEFYFPGGL 269 ++ ++ + + P+ + F + GL Sbjct: 227 KGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIKRGEGGALEQIFKYDRGL 286 Query: 270 KTYLQTKLENRSLISSEIFTGKTE--KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 Y++ ++ + + + E + + ++E A+ W + ++ NTI T E Sbjct: 287 IDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNTSFSESVHTFANTINTHE 346 Query: 327 GGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHE G R ALT + + + DD+ I+S+ + EP+F GQTK Sbjct: 347 GGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLTAIISIKLGEPQFEGQTK 406 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE--VNRKT 442 TKL + +A+ V+ + D +L QNP E ++ + R+ RK R+ +RK Sbjct: 407 TKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAASARIAARKARDLARSRKG 466 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKL+DC E+FIVEGDSAGGSA+Q R+ QA+LP+RGKILNV A Sbjct: 467 LLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPRIQAILPIRGKILNVEKA 526 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ +NQ++ ++ ALG + ++ E LRY KV++M DADVDG HI +LLLT ++ Sbjct: 527 RIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADADVDGHHINTLLLTLLFRF 586 Query: 563 MYDLIEQKHLFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIE---ISRF 617 M LIE ++++ PPL+R+ + + + + + +L ++ GK + + R+ Sbjct: 587 MKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRAGQEAGKKLPKENPVQRY 646 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM A +L ET MD +R +L+V ++ + + LMG ++R FIQ Sbjct: 647 KGLGEMNAKELWETTMDPEQRLMLQVTLDD----AAHADEIFSILMGEDVEQRRSFIQRN 702 Query: 678 ASFIDDVG 685 A + + Sbjct: 703 AKDVRFLD 710 >gi|330960110|gb|EGH60370.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 634 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------ATGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTEFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|237798258|ref|ZP_04586719.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021110|gb|EGI01167.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 634 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 366/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|1617217|emb|CAA69665.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 804 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R I Q + G+P +PL +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ + Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSFQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|289672548|ref|ZP_06493438.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. syringae FF5] gi|330939840|gb|EGH43074.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. pisi str. 1704B] Length = 634 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 240/654 (36%), Positives = 365/654 (55%), Gaps = 28/654 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 VQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS ++ V V R + F+ G + L V + GT + F PDPK Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + EK E+++ GL++YLQ Sbjct: 178 FDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLQD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + E F G + V+WA+ W E + SY N I T +GGTH +G Sbjct: 230 SVTEFLRLPDEPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L + +L + I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|284931406|gb|ADC31344.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. F] Length = 633 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 236/647 (36%), Positives = 353/647 (54%), Gaps = 28/647 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+ I++L+GLEPVR RPGMYIG TD + LHHL E+ DNA+DE + G AN IEV Sbjct: 3 SNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEVVH 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV + N ST++ + T LHAGGKFD+ Y++SGGLHGVG SV Sbjct: 63 KKDGSIIVTDNGRGIPVGKNL-ATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L V V R ++ + G + KK K GT I F PDP IF + Sbjct: 122 VNALSRKLIVNVHRDGGMYESIYQDGGKIIQPLKKMGSSTKHGTIIQFWPDPTIFKN-IQ 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ + + ++L +K + + + F G+ YL+ EN+ Sbjct: 181 FNPYMIKERLHESSFLFKGLKIVFVDE------NNPELSQTFIAKDGILEYLKYVNENKK 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 IS I +K G ++ E+ I S+ N++ T EGG+HE+G + A+ Sbjct: 235 TISKIIPFKGDYEKIVVDGCFQYTD---NESELIISFANSVKTSEGGSHENGFKQAMLET 291 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVE 397 I Y++ + N + DL +LSV + E + GQTK KL + + + V Sbjct: 292 INDYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVA 351 Query: 398 NALRDPFDHYLVQNPIEATKLL--EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 L ++L +N +A +L+ +I+ ++E ++ K+ K+A + L GKL Sbjct: 352 KILTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTP 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 Q E+F+VEGDSAGG+AK R++ QA+LPLRGK++NV + + + N++I+ Sbjct: 412 AQQKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILS 471 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ LGC + + ++L+Y K+IIMTDAD DGAHI LLLTFFY+ M +LIEQ +++ Sbjct: 472 IISCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIA 531 Query: 576 SPPLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PL++I KS +A D+ ++ ++ G E+ R+KGLGEM + QL T M Sbjct: 532 LAPLYKISAKNSNKSAFAWDDYQLDELRVKY-----GSYEVQRYKGLGEMNSEQLWTTTM 586 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 D +KR L++V I + + ++ LMG A R +I E F Sbjct: 587 DPSKRQLIQVSIQNAV----QAERKVSILMGDDASIRKNWINENVDF 629 >gi|262373790|ref|ZP_06067068.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205] gi|262311543|gb|EEY92629.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205] Length = 627 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 260/645 (40%), Positives = 376/645 (58%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADQICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 EDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVAVQRQGNLYQMAFEQGEPVAPLSVLEGKVAKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + DK EK + F GL YL +LE+R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIY-DDKINNEKIE------WQFENGLVDYLMDELEDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPAPAFVSSGQAE---RAACEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNMKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ AT+L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIATQLAEMAIAKAGRRLK--AAKKVERKKIVAGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E HLF+ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEDGHLFVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA D++ + IL++ K G +I+RFKGLGEM ASQL+ET MD N Sbjct: 525 PLYRIDIGKDVHYALDDDELEAILKKVK--GNKNPQITRFKGLGEMNASQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R +++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKHWLEQKGNLAD 624 >gi|88705315|ref|ZP_01103026.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis KT71] gi|88700405|gb|EAQ97513.1| DNA topoisomerase IV subunit B; gyrase B [Congregibacter litoralis KT71] Length = 628 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 253/649 (38%), Positives = 369/649 (56%), Gaps = 28/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y + SI +L GLEPVR RPGMY TD +HL E+IDN++DE +AG+A I+V L Sbjct: 2 SDYSSDSIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEIIDNSVDEALAGFARQIDVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+ D+GRG+PV+ HP+ K +E+IL+TLHAGGKF + Y+ SGGLHGVG+SV Sbjct: 59 HTDGSLSACDDGRGMPVDMHPEQ-KKPGVEVILSTLHAGGKFSSKNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS +L VT+ R + F+ G S L+ + + GT + F PDP+ F Sbjct: 118 VNALSKQLTVTIRRDGQVHEMSFAGGEKTSELKVIDSCGKRNTGTMVRFTPDPQYFDSIN 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F RL+ + ++KA L ++ + +K+ EKEE+++ GL YL + E Sbjct: 178 -FSVPRLMHVLRAKAVLCPGLRVTFLDEKKN-------EKEEWFYEDGLTDYLLSATEGF 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + FTG V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 230 PTVPAAPFTGSFSGSTE---AVDWAVQWLPEGGELITESYVNLIPTAQGGTHVNGLRTGL 286 Query: 339 TRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ E + R + + DD+ +LS + +P+F+GQTK +L S +A V Sbjct: 287 LDAMREFCELRSLLPRGVKLAPDDIWERCSYVLSSKLEDPQFSGQTKERLSSREAAAFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ +A L E I ++ RLR ++V RK LPGKLADCS Sbjct: 347 GVAKDAFSLWLNQHTGDAEALAELCINTAQRRLR--SAKKVVRKKVSAGPALPGKLADCS 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S++I +Q++ ++ Sbjct: 405 GEDISRTELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVDSQEILASQEVHNIS 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG LRY KV I+ DAD DG HIA+L+ F + L+ H+++ P Sbjct: 465 VALGIDPADDDL-TGLRYGKVCILADADSDGLHIATLICALFVRHFRALVSAGHVYVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G + YA DE KQ IL+ + K GK+ + RFKGLGEM QL+ET M A+ Sbjct: 524 PLYRIDIGKEVFYALDEGEKQGILDRIEAEKKRGKVNVQRFKGLGEMNPLQLRETTMSAD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 R L+++ + + +T + ++ L+ K A +R +++ + + + Sbjct: 584 TRRLVQLRLE----AGDETNEVLDMLLAKKRAGDRKSWLETKGDLAEVL 628 >gi|285017938|ref|YP_003375649.1| DNA topoisomerase iv subunit b protein [Xanthomonas albilineans GPE PC73] gi|283473156|emb|CBA15662.1| probable dna topoisomerase iv subunit b protein [Xanthomonas albilineans] Length = 629 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 241/646 (37%), Positives = 371/646 (57%), Gaps = 26/646 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDNA+DE +AG+A IEV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHARHIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ S +E+ILT LHAGGKF + Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKISGVELILTRLHAGGKFSDRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + F+ G S LE V + GTR+ F PDP F F Sbjct: 121 ALSKQVQLFIRREGNEYRMAFADGHAASKLEIVGSVGKKNTGTRLRFLPDPNYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++KA L + + E + ++F GL+ YL+ +L R L Sbjct: 180 AVRALRHLLRAKAVLCPGLTVKLHDE-------ATDEHDTWHFEDGLRDYLRGELAEREL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K R V+WA AW + + SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKD---REIVDWAAAWVVDGDLVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L QN T++ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLWLNQNVETGTRIAQIAIDRASARLK--TEKQITRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSA+QAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSARQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC + + LRY KV+I+ DAD DG HIA+LL F + L++ H+F+ PPLF Sbjct: 468 GCDPGKEEI-DGLRYGKVVILADADSDGLHIATLLTALFLRHFPSLVKAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K+ +LE+ + KG++ ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKRSLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+++ +++ ++ L +A +R ++++ + + Sbjct: 587 LVQLTVDEGDDTPALMDML---LAKKRASDRKQWLETKGDLAS-LD 628 >gi|331009741|gb|EGH89797.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 634 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVPKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|28872077|ref|NP_794696.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|213967903|ref|ZP_03396049.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato T1] gi|301384422|ref|ZP_07232840.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato Max13] gi|302062286|ref|ZP_07253827.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. tomato K40] gi|28855331|gb|AAO58391.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213927246|gb|EEB60795.1| DNA topoisomerase IV, B subunit [Pseudomonas syringae pv. tomato T1] gi|330963729|gb|EGH63989.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014588|gb|EGH94644.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 634 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 365/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTEFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|148244667|ref|YP_001219361.1| DNA topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii HA] gi|146326494|dbj|BAF61637.1| topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii HA] Length = 626 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 251/645 (38%), Positives = 365/645 (56%), Gaps = 24/645 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD+SSI +L GLEPVR PGMY T+ + +HL EVIDN++DE IAG+A+ I V L Sbjct: 2 NSYDSSSIEVLTGLEPVRKHPGMY---TETECPNHLAQEVIDNSVDEAIAGFASKINVVL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N L+V D+GRG+PV+ HPK KS +E+ILT LHAGGKF N Y+ SGGLHGVGISV Sbjct: 59 YKNNSLSVEDDGRGMPVDIHPK-EGKSGVEVILTKLHAGGKFSNDLYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-RGTRITFRPDPKIFGDKA 220 VNALS + + + R FS G + L+ KV GT + F+PD F D Sbjct: 118 VNALSTLVEIWIKRDAKEHHITFSNGSKKTELKVTRKVSKYNTGTIVKFKPDA-RFFDNI 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A +L +SKA L ++ + + + +++ + GLK YL L+ Sbjct: 177 KFSATKLHNNLRSKAVLCPDLEINFYNE-------INEKTDKWIYKEGLKDYLSKSLDGL 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ F K + N SY N I T GTH +GLR LT Sbjct: 230 DCLPTDPFVVN-YKTNEQQLNCSVTWTQYNTNIIAESYVNLIPTI-SGTHVNGLRSGLTE 287 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 +K++ E + I + DD+ +LS+ I +P+F+GQTK +L S + V N Sbjct: 288 ALKEFCEFRNLIPKNIKLTPDDVWQKISYVLSIKIMDPQFSGQTKKRLSSRECASFVANI 347 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D F +L Q+ A ++ + I ++ +L+ ++V RK LPGKL+DC Sbjct: 348 VKDTFSIWLNQHTSMAKEIAQLAIINAQIKLKTN--KKVIRKKIFSGPILPGKLSDCIST 405 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TE+F+VEGDSAGGSAKQARN+ QA+LPLRGKILN SE+I N++I D+ A Sbjct: 406 DLNQTEVFLVEGDSAGGSAKQARNKEYQAILPLRGKILNTWEINSEQILANKEIHDISIA 465 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S+ +LRY K+ I+ DAD DGAHIA+L+ T F + L+++ H+F+ PPL Sbjct: 466 IGLEPNSEDL-SNLRYGKICILADADSDGAHIATLICTLFMKHFPKLVQEGHIFVAMPPL 524 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKR 638 +RI G + YA + + I+ + K K KI++ RFKGLGEM SQL+ET M +N R Sbjct: 525 YRIDAGKQVYYALNNNERDTIIRKVKNENKRVKIQVQRFKGLGEMNPSQLRETTMLSNTR 584 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 L+++ N L K ++K +A +R K+++E + +D+ Sbjct: 585 HLIQLTSNNPLQIFKTMDMLLSK---KRAADRKKWLEENGN-LDN 625 >gi|256390961|ref|YP_003112525.1| DNA topoisomerase IV subunit B [Catenulispora acidiphila DSM 44928] gi|256357187|gb|ACU70684.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM 44928] Length = 709 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 235/707 (33%), Positives = 343/707 (48%), Gaps = 68/707 (9%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + +Y A + +LEGL+ VR RPGMYIG D + L H E+IDN++DE +AG+ Sbjct: 7 PAPSADKDGSYTARHLLVLEGLDAVRKRPGMYIGSNDGRGLMHCLWEIIDNSVDEALAGF 66 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + IE+ L +G V D GRGIPV+ PK S +E+++T LHAGGKF +Y SGG Sbjct: 67 GDKIEIILHKDGSAEVRDTGRGIPVDVEPK-TGLSGVEVVMTMLHAGGKFGGGSYAASGG 125 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------LSPLEKKEKV 199 LHGVG SVVNALS + + V R T+ + F RGIP S L K KV Sbjct: 126 LHGVGASVVNALSSRVDMEVDRAGTVHAMSFQRGIPGVFADEGPEAKFKAESGLRKVGKV 185 Query: 200 RN-------------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 GTR F PD +IF A F L + A+L + Sbjct: 186 SRALVPKSADGRRAAPTGTRTRFWPDRQIFLKDAEFVLEDLHARARQTAFLVPGLTIRVV 245 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE------------- 293 +++ + E F + GG+ +++ +R + + FTG + Sbjct: 246 DERDGKQDE-----EIFSYAGGISEFVEFLAPDRPITDTLRFTGSGKFTETVPVLDEQGH 300 Query: 294 ---KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 V+ A+ W E I S+ N I T +GGTH G L + + T Sbjct: 301 MTPADIERELFVDVALRWGTEYDTVIRSFVNIIATPKGGTHLVGFGKGLLKAANEQLRAT 360 Query: 350 QNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 + + +I +D+ +++V + EP+F GQTK L + A R V + + F + Sbjct: 361 KLLKVNDDDVIREDVFEGLTAVVTVRLAEPQFEGQTKEVLGTPAANRIVTRVVDNAFKEF 420 Query: 408 ----LVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAH 462 + A +LE + + R+ R+ +E RK A+ LP KLADC + Sbjct: 421 LTSAKRNDKPMARGVLEKIANAARTRITARQHKEAQRRKNALETSALPAKLADCRSDDVD 480 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +E+FI+EGDSA GSAK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 481 RSEMFIIEGDSAMGSAKAARNSEFQALLPIRGKILNVQKSSIADMLKNTECAAIIQVVGA 540 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + + + RY KVI+M DADVDG+HI LLLT F++ M ++E ++ PPL RI Sbjct: 541 GSGRSFDIDQARYGKVILMADADVDGSHIRCLLLTLFHRYMRPMLEAGRVYAAVPPLHRI 600 Query: 583 ------TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635 + +Y + + ++ + E K GK K I R+KGLGEM A QL ET MD Sbjct: 601 EVIGAGRAKNEFIYTYSDNEMRRTVAELLKKGKRIKEPIQRYKGLGEMDADQLAETTMDP 660 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ + + + + LMG R +FI A+ +D Sbjct: 661 RHRTLRRITV----ADGESADKAFDLLMGNDVAPRREFIINSAAVLD 703 >gi|323144110|ref|ZP_08078750.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066] gi|322416125|gb|EFY06819.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066] Length = 638 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 234/657 (35%), Positives = 359/657 (54%), Gaps = 28/657 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + + Y +SI +LEGLEPVR RPGMY TD + +HL EVIDN++DE +AG+A Sbjct: 2 TKEQINEYTGASIEVLEGLEPVRRRPGMY---TDTQNPNHLGMEVIDNSVDEALAGFATK 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 IEV+L +G L V+DNGRG+PV+ HP +E+I + LHAGGKF N Y SGGLHG Sbjct: 59 IEVNLYKDGSLEVIDNGRGMPVDMHP-TEKIPAIELIFSRLHAGGKFSNDNYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG+SVVNALS L V+R ++S +S G + L+ +++ GT I F PD + Sbjct: 118 VGVSVVNALSKRLEAKVSRDGQVYSIVYSGGEKIEDLKVIGTCPKSRTGTAIRFWPD-EK 176 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 + D F+ L + ++KA L + + + E EE++ G L +YL T Sbjct: 177 YFDGIAFNVKALTHLLRAKAVLCKGLSVVFKDENSGKE-------EEWHHEGSLSSYLLT 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE---ITSYCNTILTDEGGTHES 332 ++++ ++ F G + VEWA+ W ++ + S+ N I T EGGTH + Sbjct: 230 QMQDAEIVPDPPFDGSFSQ---PESEVEWAVTWNVDSADKLLHESFVNLIPTPEGGTHVN 286 Query: 333 GLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G R L ++++ + R + +++DD+ +L+V I++P+FAGQTK KL S Sbjct: 287 GFRSGLLIALREFCDLHALLPRNLKLVADDVWAHCSFVLAVKIQDPQFAGQTKEKLSSRQ 346 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 VE ++D Y + + + +IE ++ R + V RK ++R +LPG Sbjct: 347 CASLVEGIVKDAAALYFNSHTEIGKAVAKLIIESAKRRE--SAAKVVERKKSVRGPQLPG 404 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC+ ELFIVEGDSAGGSA+QAR+ S QA+LPLRGKILN + ++ Sbjct: 405 KLVDCTSTDPSRGELFIVEGDSAGGSARQARDSSYQAILPLRGKILNTWEVSANTALASE 464 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I + A+G S +LRY+K+ I+ DAD DG HI +LL F + L+ H Sbjct: 465 EIRAISVAMGLDPDSDDL-TNLRYDKICILADADSDGLHIGTLLCALFVKHFPALVRAGH 523 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKGLGEMLASQLK 629 +++ PPL+R+ G YA D+E ++F K G I+I RFKGLGEM QL+ Sbjct: 524 VYVACPPLYRLDCGKIKEYALDDEELALKQKQFLKRGIKAENIKIQRFKGLGEMNPEQLR 583 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVG 685 ET + + R L+++ + + ++ L+ K A +R +++++ + + Sbjct: 584 ETTLSPDSRRLMQLTLEDLGDGPVYA--LMDMLLSKKRAADRRQWLEKNGDKAELID 638 >gi|239502848|ref|ZP_04662158.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB900] Length = 627 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 374/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + +F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPVFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HLF+ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|260550166|ref|ZP_05824379.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624] gi|260406694|gb|EEX00174.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624] Length = 627 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HLF+ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 624 >gi|300956295|ref|ZP_07168597.1| DNA gyrase, B subunit [Escherichia coli MS 175-1] gi|300316882|gb|EFJ66666.1| DNA gyrase, B subunit [Escherichia coli MS 175-1] Length = 804 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ + Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSYQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|148380730|ref|YP_001255271.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A str. ATCC 3502] gi|153932289|ref|YP_001385014.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. ATCC 19397] gi|153937688|ref|YP_001388484.1| DNA topoisomerase IV subunit B [Clostridium botulinum A str. Hall] gi|170761352|ref|YP_001788088.1| DNA topoisomerase IV subunit B [Clostridium botulinum A3 str. Loch Maree] gi|148290214|emb|CAL84333.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502] gi|152928333|gb|ABS33833.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A str. ATCC 19397] gi|152933602|gb|ABS39101.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A str. Hall] gi|169408341|gb|ACA56752.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 651 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ +K GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL+++ +G KSVY +++E +K ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|261867418|ref|YP_003255340.1| DNA gyrase subunit B [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412750|gb|ACX82121.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 806 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 229/570 (40%), Positives = 350/570 (61%), Gaps = 19/570 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + + Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + Sbjct: 2 STNTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q +S G P +PL + + GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V ++ +++ F++ GG++ +++ Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYKGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ I + F EK G VE A+ W + I + N I +GGTH +G Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR + Y E K ++ DD V ++SV + +P+F+ QTK KLVS + Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ + + YL++NP + ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 ++++ PPL+++ +G + Y D+E + Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E + + + I R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAIEWLMRESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805 >gi|168180821|ref|ZP_02615485.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum NCTC 2916] gi|182668281|gb|EDT80260.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum NCTC 2916] Length = 651 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 227/660 (34%), Positives = 353/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDTGE-TGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYTKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL++I +G KSVY +++E +K ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKIYKKDKKGEKSVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|84624476|ref|YP_451848.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575893|ref|YP_001912822.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae PXO99A] gi|84368416|dbj|BAE69574.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520345|gb|ACD58290.1| DNA topoisomerase IV, B subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 629 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 241/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IEV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ + Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA W E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAGWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRLLMDML---LAKKRASDRKQWLETKGDLA 625 >gi|325123890|gb|ADY83413.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus PHEA-2] Length = 627 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D++ + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R ++++++ + D Sbjct: 583 RRLVQLDLDDVHLTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624 >gi|330873813|gb|EGH07962.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 634 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 243/655 (37%), Positives = 366/655 (55%), Gaps = 27/655 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKIEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + +E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVTEFLRLPNEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ + + L +A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDYAATSEMMDML---LAKKRAGDRKSWLESKGNLAEVL 633 >gi|302537373|ref|ZP_07289715.1| DNA gyrase subunit B [Streptomyces sp. C] gi|302446268|gb|EFL18084.1| DNA gyrase subunit B [Streptomyces sp. C] Length = 706 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 236/706 (33%), Positives = 344/706 (48%), Gaps = 53/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 + + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TADTSVPSSALLSGADRDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + G+ + IEV L + + V DNGRGIPV+ PK S +E+++T LHAGGK Sbjct: 62 DNSVDEALGGFCDHIEVILHDDASVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--- 199 F +Y SGGLHGVG SVVNALS L V V R ++ + F RG+P E+ + Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDVEVDRNSSTHAISFRRGVPGVFTEQGPESPFD 180 Query: 200 ------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 + K GTRI + D +IF A L + + A+L + Sbjct: 181 PANGLRKAKRIAKGKTGTRIRYWADRQIFLKDARLSLETLYQRARQTAFLVPGLTIVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 ++ I E F F GG+ + + +++++ TG Sbjct: 241 ERGIDGAGKTE--ETFRFDGGISEFCEYLAQDKAVCDVLRLTGTGTFKETVPVLDDRGHM 298 Query: 294 --KKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W + S+ N I T +GGTH SG ++T+ + + + Sbjct: 299 TPTEVTRELGVDIALRWGTGYETGVKSFVNIIATPKGGTHVSGFERSVTKTVNEVLRSAK 358 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD M +++V + EP+F GQTK L + A R V + +L Sbjct: 359 LLRVAEDDVVKDDAMEGMTAVVTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFL 418 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 + + V+E+ R+ + RKTA+ LP KLADC + Sbjct: 419 TSTKRDDKQQARAVMEKIVAAARTRIAARQHKEAQRRKTALETSSLPAKLADCRSDDVDR 478 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 479 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 538 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K++++ DADVDGAHI LLLT F + M ++E +F PPL RI Sbjct: 539 SGRTFDIDAARYGKIVLLVDADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIE 598 Query: 583 ----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + ++ L E+ +K+ + K I R+KGLGEM A QL ET MD Sbjct: 599 LVQPKKGQDKYVYTYSDNELRQTLLEYQRKNIRYKDAIQRYKGLGEMDADQLAETTMDPR 658 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I L + + LMG + R +FI A+ +D Sbjct: 659 HRTLRRINIGD----LDSAEQVFDLLMGNEVAPRKEFITGSAATLD 700 >gi|15894905|ref|NP_348254.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum ATCC 824] gi|15024585|gb|AAK79594.1|AE007672_1 DNA gyrase B subunit [Clostridium acetobutylicum ATCC 824] gi|325509042|gb|ADZ20678.1| DNA topoisomerase IV subunit B [Clostridium acetobutylicum EA 2018] Length = 650 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 223/666 (33%), Positives = 353/666 (53%), Gaps = 36/666 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++YD +S+ LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ G+ Sbjct: 1 MNKNENIEDYDVTSLTSLEKLEPVRIRPGMYIGSTGSKGLHHCIWEILDNAIDELTNGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++ ++ L+ + +T++DNGRGIP HP KS +E++ T LH GGKF+N Y+ SGGL Sbjct: 61 DMAKIILNKDKSVTIIDNGRGIPTGIHP-IKKKSGVEMVYTELHTGGKFNNKNYKTSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKR 203 HGVG +VVNALS V V + I+ Q+F G P++ +EK K +K+ Sbjct: 120 HGVGAAVVNALSKWTEVEVYQNGYIYRQRFEYAYDKELKRDMPGTPVTEIEKIGKT-DKK 178 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT++TF+PD ++F F + + + A+ + + +E P+ + + Sbjct: 179 GTKVTFKPDEEVFTS-TDFKFDVIDERLKEIAFQNKGITLILEDHRE-----DEPQVKTY 232 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEIT-SYCNT 321 + GL ++ E++++I E++ + E + + + E SY N Sbjct: 233 HSERGLLDFIDYLNESKTVIHKNPIIFDGEREINGLKLYGEVCLQFTDSTTEYIASYVNN 292 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I T E GTHE+G + +TR K++A+ ++ +D+ I+ + + P F Sbjct: 293 IPTTEAGTHEAGFKTGMTRAFKEWAKKLGVLKEKDKEFEGNDVREGMTAIIRIKLTNPVF 352 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-V 438 GQTKTKL + +A + + F ++ N AT +++ + + R + +K E Sbjct: 353 EGQTKTKLGNNEAYTMMNDLAYSGFSEWIEDNKDTATMIIKNAVNAASRREKIKKINEAE 412 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K L GK+A C+ A E IVEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 413 KKKIGKGTSPLAGKIAVCTLKDASLCEFIIVEGDSAGGSAKQARDRRFQSIMPSKGKIMN 472 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 E + ++++ A+G YREEDLRY+K+IIM+DADVDG HI +L +T+ Sbjct: 473 TEKQKLENVLGSEELKIFNTAVGTGILDNYREEDLRYDKIIIMSDADVDGYHIRTLWMTY 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEI 614 Y+ M LI +HL++ PPL+++ + +K YA+ +E K +E K I Sbjct: 533 IYRYMRQLISNEHLYIALPPLYKVYKNSKKGEVVEYAYSDEQLDKAKKEVGK----GYLI 588 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFI 674 R+KGLGEM QL ET ++ RTL V I + ++ LMG + R ++ Sbjct: 589 QRYKGLGEMNPDQLWETTLNPETRTLQMVTIED----AAKAEKMVSLLMGDVVEPRKNYM 644 Query: 675 QERASF 680 + A F Sbjct: 645 YKYAEF 650 >gi|293610546|ref|ZP_06692846.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826890|gb|EFF85255.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 627 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 255/645 (39%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D++ + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDDELETILKNIK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R ++++++ + D Sbjct: 583 RRLVQLDLDDVHLTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624 >gi|304389375|ref|ZP_07371339.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327364|gb|EFL94598.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 703 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 232/697 (33%), Positives = 343/697 (49%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 8 SDYSAHHLSVLEGLEAVRKRPAMYIGSTDKRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+P++ P S +E++ T LHAGGKFD Y+++GGLHGVG SV Sbjct: 68 YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R +F RG P S L K KV+ Sbjct: 127 VNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLTKLGKVKK 186 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GTR+ F D +IF + F L + ++L + + + Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLR-----GEETLT 241 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 + F GG ++ +R++ + G K+ V+ Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCEVD 301 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH +G L + ++ + + + I Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413 +D++ +++V + EPEF GQTK L S + V + + + ++ Sbjct: 362 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKREDKN 421 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 + + LL+ ++ RL R +E RK A+ LP KL DC + +ELFIVEGD Sbjct: 422 QVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q LG + + Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M +I +F PPL RI +G Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601 Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + +Y + E+ K L + ++ G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 602 EFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 661 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + ++ ++ LMG+ R +FI E AS +D Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697 >gi|257054877|ref|YP_003132709.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM 43017] gi|256584749|gb|ACU95882.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM 43017] Length = 701 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 230/689 (33%), Positives = 338/689 (49%), Gaps = 52/689 (7%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 SA + Y A + LEGLE VR RPGMYIG TD + ++HLF+E++DN+ DE +AG+A Sbjct: 18 TASAENLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGVNHLFTEIVDNSTDEGVAGHATK 77 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L +G + V D+GRGIP H K S +E++LT LHAGGKF S Y+ SGGLHG Sbjct: 78 IVVTLHADGSVEVDDDGRGIPTGTHGK-SGLSGVELVLTRLHAGGKFGGSGYKASGGLHG 136 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEKKEKVR 200 VG S VNALS L VTV R + F RG+P +K K Sbjct: 137 VGASAVNALSLRLDVTVKRDGKVHEMSFRRGVPGIFDGPGPRAKFTPKSGLRFVRKMKRG 196 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GT I + D + F A D ++ ++ A+L V + Sbjct: 197 ESTGTTIRYWHDARYFEKGAALDPEQVRMKLRNTAFLVPGVTYVLRTA-----TDSTINE 251 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWA 305 E F++P GL ++ + E R VE A Sbjct: 252 ETFHYPNGLVDMVEFLAPAGDRPVCDTQLITGEGTYRENAADANGVMQSNVERRAEVEIA 311 Query: 306 IAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDD 361 + W + NTI GGTH G L R + T+ + I DD Sbjct: 312 LRWGTGYERTVECFTNTIRNIHGGTHRKGFERGLVRAVHDAISKTRGLLKPKEEPPILDD 371 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY--LVQNPIEATKLL 419 + ++ V I EP+F QTK +L + + V+ + + + E +L Sbjct: 372 VCEGLTAVVHVRIPEPQFTSQTKDELSTAGITKVVQGLVEKHIKAWAEHRRTRAEVKTVL 431 Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + +++ S RL +++Q++ RKTA+ +P KL DC +ELF+VEGDSA GSA Sbjct: 432 QKIVDASRVRLAQKQQKDAARRKTALEGAAMPPKLVDCRSTGVSRSELFLVEGDSALGSA 491 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 + AR QA+LPLRGKILNV A + N +I +VQ LG T + +RY +V Sbjct: 492 RLARVSEYQALLPLRGKILNVQKANLSEALKNAEIASIVQVLGAGTGRTFDISSMRYGRV 551 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-TQGTK--SVYAHDEE 595 I+M DADVDG+HI +LL+T F + M +I + L+ PPL +I T+G K + Y + E Sbjct: 552 ILMADADVDGSHIRTLLITLFARYMRPVITEGRLYAAMPPLHKIVTKGRKPETHYTYTER 611 Query: 596 HKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + + E ++ GK ++ + RFKGLGEM A +L ET M+ R++ R+ ++ + Sbjct: 612 EMEAKVAELERSGKQVVKPVPRFKGLGEMDADELWETTMNPATRSVRRITLDD----VDA 667 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDD 683 + ++ LMG K + R K++ A ++ Sbjct: 668 AEATLELLMGEKVEPRRKWLITSAERVNQ 696 >gi|148549993|ref|YP_001270095.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1] gi|148514051|gb|ABQ80911.1| DNA topoisomerase IV subunit B [Pseudomonas putida F1] Length = 634 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 246/653 (37%), Positives = 364/653 (55%), Gaps = 27/653 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDSP-KFSISRLKHVLKAKAVLCPGLLVSFEDK-------ASGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVNEFQRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E + R + + +D+ +LS+ +++P+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRSLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD N R L+++ ++ + + L +A +R +++ + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631 >gi|50086499|ref|YP_048009.1| DNA topoisomerase IV subunit B [Acinetobacter sp. ADP1] gi|49532475|emb|CAG70187.1| topoisomerase IV subunit B [Acinetobacter sp. ADP1] Length = 626 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 256/646 (39%), Positives = 371/646 (57%), Gaps = 29/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN I V++ Sbjct: 2 SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANKIRVTV 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISV Sbjct: 59 YQDGSLAVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++ F G P++PLE + + GT + F P+ K F Sbjct: 118 VNALSSRVEVEVQRQGNLYKMAFEHGEPVAPLEVLAGKAPKRASGTTVHFWPEAKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L ++KA L+ ++ + + E E+ F GL YL +LE+ Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQIIYVDE-------INNETIEWQFENGLVDYLMDELED 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 R ++ + F + R + E+AI W E E SY N I T +GGTH +GLR Sbjct: 230 RDILPNPAFLSSGQ---VERASCEFAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 287 VTEALREFCELRNLLPRNLKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASGVV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 N +D F +L QN A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 347 LNIAKDAFALWLNQNSEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 405 VGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ Sbjct: 465 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLFRI G YA D+E IL + K +I+RFKGLGEM ASQL+ET MD + Sbjct: 524 PPLFRIDAGKDVFYALDDEELDAILSKLK---TKNPQITRFKGLGEMNASQLRETTMDPD 580 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R +++++ + D Sbjct: 581 TRRLVQLDLDDAHMTAGLLDKL---LAKKRSADRKHWLEQKGNLAD 623 >gi|168183163|ref|ZP_02617827.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum Bf] gi|237796208|ref|YP_002863760.1| DNA topoisomerase IV subunit B [Clostridium botulinum Ba4 str. 657] gi|182673723|gb|EDT85684.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum Bf] gi|229263801|gb|ACQ54834.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum Ba4 str. 657] Length = 651 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY N EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGNTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ +K GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL+++ +G K VY +++E +K ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKLVYCYNDEELEKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|329297784|ref|ZP_08255120.1| DNA gyrase subunit B [Plautia stali symbiont] Length = 802 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 222/566 (39%), Positives = 344/566 (60%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSNIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R Q + G+P +PL + GTR+ F P F + Sbjct: 121 SVVNALSQKLELIIRRDGKEHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + +++ GG+K +++ N Sbjct: 180 TDFEYEILAKRLRELSFLNSGVSIRLEDKRD-------DKNDHYHYEGGIKAFVEYLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 + I +F TEK G VE A+ W + + + N I +GGTH +G R A+ Sbjct: 233 KKPIHPNVFYFCTEKDGI---GVEVALQWNDGFQKNIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD V ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D++ + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQY 555 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIDWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAI----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801 >gi|298346918|ref|YP_003719605.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063] gi|315656629|ref|ZP_07909516.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236979|gb|ADI68111.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC 43063] gi|315492584|gb|EFU82188.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 703 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 232/697 (33%), Positives = 343/697 (49%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD++ L H E+IDN++DE +AG+ + IEV L Sbjct: 8 SDYSAHHLSVLEGLEAVRKRPAMYIGSTDKRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+P++ P S +E++ T LHAGGKFD Y+++GGLHGVG SV Sbjct: 68 YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R +F RG P S L K KV+ Sbjct: 127 VNALSARMDVAVDRDGYTHGLQFRRGEPGVFSDTEELNPNNAFLPFEDSSKLTKLGKVKK 186 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GTR+ F D +IF + F L + ++L + + + Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITITDLR-----GEETLT 241 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 + F GG ++ +R++ + G K+ V+ Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFMEIVQVPNQQTGHLEPKEMERTCEVD 301 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH +G L + ++ + + + I Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413 +D++ +++V + EPEF GQTK L S + V + + + ++ Sbjct: 362 EKEDILTGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVTEELEAKLNSRKREDKN 421 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 + + LL+ ++ RL R +E RK A+ LP KL DC + +ELFIVEGD Sbjct: 422 QVSALLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q LG + + Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M +I +F PPL RI +G Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601 Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + +Y + E+ K L + ++ G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 602 EFLYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPQHRTLRRIRL 661 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + ++ ++ LMG+ R +FI E AS +D Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697 >gi|167035957|ref|YP_001671188.1| DNA topoisomerase IV subunit B [Pseudomonas putida GB-1] gi|166862445|gb|ABZ00853.1| DNA topoisomerase IV, B subunit [Pseudomonas putida GB-1] Length = 634 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 247/653 (37%), Positives = 363/653 (55%), Gaps = 27/653 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSASA-YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G S LE V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDSA-KFSISRLKHVLKAKAVLCPGLLVTFEDK-------ASGEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 VDSVSEFLRLPDEPFCGSLAGN---KEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDIWERISFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L +P +L E I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L+E Sbjct: 463 QEVHNIAVAIGVDPGATDL-AQLRYGKICILADADSDGLHIATLLCALFVQHFRALVEAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 ET MD N R L+++ ++ + + L +A +R +++ + + + Sbjct: 582 ETTMDPNTRRLVQLTLDDVEATCELMDKL---LAKKRAGDRKSWLETKGNLAE 631 >gi|300947540|ref|ZP_07161717.1| DNA gyrase, B subunit [Escherichia coli MS 116-1] gi|300452877|gb|EFK16497.1| DNA gyrase, B subunit [Escherichia coli MS 116-1] Length = 804 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEGIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|308188762|ref|YP_003932893.1| DNA gyrase subunit B [Pantoea vagans C9-1] gi|308059272|gb|ADO11444.1| DNA gyrase subunit B [Pantoea vagans C9-1] Length = 802 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 348/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L +T+ R+ + Q + G+P +PL + GTR+ F P + F + Sbjct: 121 SVVNALSQKLELTIRREGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + F++ GG+K +++ +N Sbjct: 180 RDFEYEILAKRLRELSFLNSGVSIRLEDKRD-------GKTDHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIG----AD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801 >gi|146284122|ref|YP_001174275.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri A1501] gi|145572327|gb|ABP81433.1| DNA topoisomerase IV, B subunit [Pseudomonas stutzeri A1501] Length = 670 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 247/681 (36%), Positives = 363/681 (53%), Gaps = 29/681 (4%) Query: 12 LPPQSQGSSEKLKKSGEIPDSPAFANQSASD---NYDASSIRILEGLEPVRMRPGMYIGG 68 P + Q S P + + S +Y A +I +L GL+PVR RPGMY Sbjct: 10 SPGELQRWSPAGALVFSRPLAADCSEHKDSARQMSYTAEAIEVLSGLDPVRKRPGMY--- 66 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKS 128 TD +HL EVIDN++DE +AG+A ++V L + L V+D+GRG+PV+ HP+ Sbjct: 67 TDTSRPNHLAQEVIDNSVDEALAGHARAVQVILHQDSSLEVIDDGRGMPVDIHPE-EGVP 125 Query: 129 TLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI 188 +E+ILT LHAGGKF N Y+ SGGLHGVGISVVNALS + VTV R + + F+ G Sbjct: 126 GVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVNALSTRVEVTVKRDGSEYRMSFAGGF 185 Query: 189 PLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 + LE V + GT + F DPK F F RL + ++KA L + + Sbjct: 186 KATDLEVIGSVGKRNTGTSVRFWADPKYFDSP-KFSITRLKHVLKAKAVLCPGLSVSFED 244 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 EK E+++ GL++YL + + E F G V+WA+ Sbjct: 245 K-------STGEKVEWHYEDGLRSYLVDSVSEYQRLPDEPFVGALAGNTE---AVDWALL 294 Query: 308 WCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMI 364 W E E SY N I T +GGTH +GLR L ++++ E R + + +D+ Sbjct: 295 WLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGLKLAPEDIWE 354 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 +LS+ ++EP+F+GQTK +L S +A V ++D F +L +P +L E I Sbjct: 355 RIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAIS 414 Query: 425 RSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + RL+ ++V RK + LPGKLADC+ ELF+VEGDSAGGSAKQAR++ Sbjct: 415 NAGRRLK--AGKKVERKKITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDK 472 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA++PLRGKILN ++ +Q++ D+ A+G + LRY K+ I+ DA Sbjct: 473 EFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAVAIGVDPGATDL-AQLRYGKICILADA 531 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 D DG HIA+LL F Q L+E H+++ PPL+RI G YA DE + ILE Sbjct: 532 DSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYRIDLGKDIFYALDEAERDGILERL 591 Query: 605 KKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 +GK +++RFKGLGEM QL+ET MD N R L+++ ++ + + L Sbjct: 592 VAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDFEGTREVMDML---LA 648 Query: 664 GTKADERFKFIQERASFIDDV 684 +A +R +++ + + + + Sbjct: 649 KKRAGDRKSWLESKGNLAEVL 669 >gi|293390763|ref|ZP_06635097.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951297|gb|EFE01416.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 806 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 229/570 (40%), Positives = 350/570 (61%), Gaps = 19/570 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + + Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + Sbjct: 2 STNTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q +S G P +PL + + GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLVVIGETT-QTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V ++ +++ F++ GG++ +++ Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ I + F EK G VE A+ W + I + N I +GGTH +G Sbjct: 232 INRGKTPIHPKSFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR + Y E K ++ DD V ++SV + +P+F+ QTK KLVS + Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ + + YL++NP + ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSAVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 ++++ PPL+++ +G + Y D+E + Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + I R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 778 QLFTTLMGDEVEPRRDFIESNALRA-NLD 805 >gi|289662651|ref|ZP_06484232.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 629 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A +EV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ + Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +E+F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPAELFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLEAKGDLA 625 >gi|288932896|ref|YP_003436955.1| DNA gyrase subunit beta [Klebsiella variicola At-22] gi|288887625|gb|ADC55943.1| DNA gyrase, B subunit [Klebsiella variicola At-22] Length = 804 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|206576571|ref|YP_002235889.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342] gi|206565629|gb|ACI07405.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342] Length = 804 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|187778654|ref|ZP_02995127.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC 15579] gi|187772279|gb|EDU36081.1| hypothetical protein CLOSPO_02249 [Clostridium sporogenes ATCC 15579] Length = 651 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 225/659 (34%), Positives = 352/659 (53%), Gaps = 34/659 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY N EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNAIDEISNGYGNTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTRITFR 210 VVNALS+ V V + I+ Q+F I +K +K GT++TF+ Sbjct: 127 VVNALSEWTEVEVFQNGKIYKQRFEYAIDKKLNKKMPGTPVTKLKVIQDTDKTGTKVTFK 186 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 187 PDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGLL 240 Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 ++ E+++ I + + EK+ + E + + + I SY N I T E G Sbjct: 241 DFIDYLNESKTPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEAG 300 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THE+G + +TR K+ A+ ++ DDL I+ + I P F GQTKTK Sbjct: 301 THETGFKTGMTRAFKEGAKKLNLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKTK 360 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 361 LGNNEAYTMMNDLAYTKFLEWIEDNKEISTLIINNALAAAARREKIKKINEAEKKKIGKG 420 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N E Sbjct: 421 LAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKIE 480 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++++ A+G Y+E+DL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 481 NVLGSEELKIFNTAIGTGVLDNYKEQDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMKS 540 Query: 566 LIEQKHLFLISPPLFRITQGT----KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 L+ HL++ PPL+++ + KS+Y +++E +K ++ K I R+KGLG Sbjct: 541 LVANGHLYIAMPPLYKVYKKDKKSEKSIYCYNDEELEKAKKQIGK----GYLIQRYKGLG 596 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 597 EMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|195537257|dbj|BAG68217.1| DNA gyrase subunit B [Glaciibacter superstes] gi|195537259|dbj|BAG68218.1| DNA gyrase subunit B [Glaciibacter superstes] Length = 621 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 236/628 (37%), Positives = 347/628 (55%), Gaps = 17/628 (2%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL SE++DN++DE +AGY + I++ + +G + V DNGRGIPV+ + K Sbjct: 1 MYIGSTGPRGLHHLVSEIVDNSVDEALAGYCDTIDIRILADGAIRVEDNGRGIPVDIN-K 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 +ST+E++LT LHAGGKF Y +SGGLHGVG SVVNALS L V V RQ ++ Q Sbjct: 60 AQGRSTVEVVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSSRLEVEVRRQGHVWRQS 119 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ GIP +PL+K E+ GT ITF P + F FD L Q A+L+ ++ Sbjct: 120 FADGIPDAPLKKGEESAE-TGTIITFWPSAETFETI-EFDYETLRVRFQQMAFLNKGLRL 177 Query: 244 CWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-GT 301 + ++ + A++ G P F + GL Y++ R E + T R Sbjct: 178 TLTDERPDQADEEGGPVVNSFMYEQGLVDYVEYLNRVRKAELVNDEIISFESEDTDRKIA 237 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 +E A+ W + +Y NTI T EGGTHE G R ALT I KYA ++ ++ Sbjct: 238 LEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRAALTTLINKYAREKGILKEKDDNLS 297 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD+ ++S+ + EP+F GQTKTKL + +A+ V+ D + +NPI+A ++ Sbjct: 298 GDDVREGLTAVISIKLAEPQFEGQTKTKLGNTEAKSFVQKVASDQLADWFARNPIQAKEI 357 Query: 419 LEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + ++ + R+ RK RE R+ + +PGKL DC +E+FIVEGDSAGGS Sbjct: 358 IRKALQAATARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIFIVEGDSAGGS 417 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 A Q RN QA+LPLRGKILNV A ++ N ++ ++ A G + + +RY K Sbjct: 418 AVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGEDFNPDKVRYHK 477 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEH 596 +++M DADVDG HI +LLLT ++ M LI+ +++L PPL+R+ Y + + Sbjct: 478 IVLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRLKWSNSPHEYVYSDLE 537 Query: 597 KQKILEEFKKHGKGKIE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 + +L + GK + I R+KGLGEM +L ET M RTLL+V ++ Sbjct: 538 RDALLADGAAAGKRIPKDNGIQRYKGLGEMDYKELWETTMAPETRTLLQVTLDD----AA 593 Query: 654 DTQDSINKLMGTKADERFKFIQERASFI 681 + + LMG + R FIQ+ A + Sbjct: 594 AADEIFSTLMGEDVESRRNFIQKNAKDV 621 >gi|92114662|ref|YP_574590.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM 3043] gi|91797752|gb|ABE59891.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM 3043] Length = 626 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 242/644 (37%), Positives = 346/644 (53%), Gaps = 27/644 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y ASSI +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A+ I V L Sbjct: 3 QYSASSIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHASHIRVRLH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D+GRG+P++ HP+ S +E+ILT LHAGGKF S+Y SGGLHGVG+SVV Sbjct: 60 DDGGIEVSDDGRGMPIDMHPEH-GVSGVELILTRLHAGGKFSQSSYRFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L + V R F+ G + L + +GT + F PD + + D Sbjct: 119 NALSRRLEIEVCRDGDRHGMAFAHGDKVEDLTVIGTCSKKAKGTVVRFWPD-ESYFDSPR 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 RL + ++KA L ++ + + + GL+ YL ++ Sbjct: 178 LALPRLKHLLRAKAVLCPGLEVTLI--------EADGTESVWQYADGLRDYLAQATDDVE 229 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALT 339 + + F G E + V+WAI W E E SY N I T GGTH +GLR L Sbjct: 230 TLPASPFLGHFEDED---QGVDWAIQWLPEGGELLQESYVNLIPTPLGGTHVNGLRSGLL 286 Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + R + + DDL +LSV + +P+FAGQTK +L S V Sbjct: 287 DALREFCEYRSLLPRGVKLTGDDLWERVSFVLSVKLLDPQFAGQTKERLSSRVVAGFVSG 346 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + +A L E VI ++ R + ++V RK LPGKLADCS Sbjct: 347 VVKDAFSLWLNHHVDQAEALAELVINAAQRRQK--SAKKVARKKVTSGPALPGKLADCSG 404 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN + I +Q++ D+ Sbjct: 405 QDPAASELFLVEGDSAGGSAKQARDRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAV 464 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+F+ PP Sbjct: 465 AIGMDPGSDDL-SKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPP 523 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA DE K IL+ + +G + RFKGLGEM QL+ET M A+ R Sbjct: 524 LYRIDLGKEVHYALDESEKTAILKRLEGK-RGTPNVQRFKGLGEMSPLQLRETTMAADTR 582 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ + + + L +A +R ++++ + D Sbjct: 583 RLVQLTLTVGDGTREMMDML---LAKKRAGDRKNWLEDYGNLAD 623 >gi|85057982|ref|YP_453684.1| DNA gyrase subunit B [Sodalis glossinidius str. 'morsitans'] gi|84778502|dbj|BAE73279.1| DNA gyrase subunit B GyrB [Sodalis glossinidius str. 'morsitans'] Length = 804 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 KIHEDNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P SPLE + ++ GT + F P F + Sbjct: 121 SVVNALSEKLELMIKREGKVHQQTYHAGVPQSPLEVVGET-DQTGTTVRFWPSFVTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIRLRDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GG H +G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEIALQWNDGFQENIYCFTNNIPQRDGGAHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNERLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIELGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALAMDG 563 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD + R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|152980258|ref|YP_001352397.1| DNA topoisomerase IV subunit B [Janthinobacterium sp. Marseille] gi|151280335|gb|ABR88745.1| topoisomerase IV subunit B [Janthinobacterium sp. Marseille] Length = 661 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 254/674 (37%), Positives = 368/674 (54%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + +S +Y SSIR+L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151 I V+L+ +G ++V D+GRGIPV HP+ T+EI+ T LHAGGKFD + Y S Sbjct: 58 KNIVVTLNTDGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFDKGSGGAYAFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITF 209 GGLHGVG+SV NALS L +TV R+N + S F+ G + PL+ + R+ + GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRENGVHSLAFAGGDVVEPLKSRPLTRDEKRSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F A L ++ +SKA L VK K E + + + GL Sbjct: 177 WPDAKYFDSSV-IPQAELQRLLRSKAVLLPGVKVTLVHAKS-------GETQTWQYDQGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEK------KGTHRGT-VEWAIAWCEENP-EITSYCNT 321 + YL L S + I + E+ +G G W +AW E+ SY N Sbjct: 229 RGYLTESLAQASNSETLIPLFEGEQYAGADAEGFAEGEGAAWVVAWTEDGAVVRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K + E+ + + ++ +D+ +LS + +P+F Sbjct: 289 IPTSNGGTHESGLREGLFGAVKSFVEMHSLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V + R + +L Q+ KL E VI++++ RLR ++ E + Sbjct: 349 GQIKERLNSRDAVRLVASFTRPSLELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEKKK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N +I D+ A+G + +LRY ++ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEIHDIAVAIGVDPHGKNDTVDLSNLRYGRICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LI++ H+ + PPL+R+ +G K +YA D+ + I ++ +K G + Sbjct: 527 LFFKHFPQLIDRGHICIARPPLYRVDAPARGKKPVQKIYALDDGELEAIEDKLRKDGVKE 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 ISRFKGLGEM A QL ET M+ + R LL V + + + N LMG +A Sbjct: 587 NAWTISRFKGLGEMNAEQLWETTMNPDTRRLLPVSLGEFDLDFSEA--RFNMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +I+E + + Sbjct: 645 ARRTWIEEHGNEAE 658 >gi|238783051|ref|ZP_04627078.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970] gi|238716052|gb|EEQ08037.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970] Length = 804 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIKAFVEYLSKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMSLALDG 563 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|119475370|ref|ZP_01615723.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium HTCC2143] gi|119451573|gb|EAW32806.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium HTCC2143] Length = 627 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 363/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI +L GL+PVR RPGMY T+ +HL EVIDN++DE +AG+A+ I+V + Sbjct: 2 SDYNAGSIEVLTGLDPVRKRPGMY---TETTRPNHLAQEVIDNSVDEALAGFAHQIDVIM 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G LT D+GRG+PV+ HP+ K +E+ILTTLHAGGKF++ Y+ SGGLHGVG+SV Sbjct: 59 HKDGSLTCSDDGRGMPVDMHPEQ-KKPGVEVILTTLHAGGKFNSDNYQFSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L +T+ R ++ +F G LE + + GT I F PD F Sbjct: 118 VNALSKLLEITIRRDGEVYKMEFKNGDKSKDLEVIDSCGKRNTGTSIRFTPDGSYFDSA- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F AR+ + ++KA L ++ + EKEE+++ GL+ Y+ Sbjct: 177 KFSVARMKHVLRAKAVLCPGLRVTCLDE-------ASGEKEEWHYEDGLRDYMVASTHGW 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + E F G V+WA+ W E E SY N I T +GGTH +GLR L Sbjct: 230 ETLPKEPFIGSFSGSNE---GVDWAVQWLPEGGELTTESYVNLIPTAQGGTHVNGLRTGL 286 Query: 339 TRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E + R I + DD+ +LS + +P+F+GQTK +L S +A V Sbjct: 287 LEAIREFCEFRSLLPRGIKLSPDDIWDKCCYVLSSKLEDPQFSGQTKERLSSREAAAFVS 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ +A KL + I ++ R+++ K +V RK LPGKLADCS Sbjct: 347 GVAKDSFSLWLNQHTEDAEKLADMCINNAQSRMKKSK--KVARKKVTSGPALPGKLADCS 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILN S++I ++++ ++ Sbjct: 405 GNDVERGELFLVEGDSAGGSAKQGRDRQYQAILPLRGKILNTWEIDSQEILASEEVHNIA 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S LRY KV I+ DAD DG HIA+L+ F + L++ H+F+ P Sbjct: 465 VAIGVDPASDDL-SGLRYHKVCILADADSDGLHIATLICALFVRHFRPLVQAGHVFVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PL+RI G YA D+ KQ IL+ + ++ KGK+ + RFKGLGEM QL+ET M + Sbjct: 524 PLYRIDVGKDVYYALDDSEKQGILDRIEAENKKGKVNVQRFKGLGEMNPLQLRETVMSGD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+R+ I + + L ++ +R +++E+ + + Sbjct: 584 TRRLVRLSIESGDETNQLMDML---LAKKRSGDRKIWLEEKGNLAE 626 >gi|325916059|ref|ZP_08178349.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937] gi|325537735|gb|EGD09441.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937] Length = 629 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 363/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A +EV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F GI S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ + Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEM 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFAGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLESKGDLA 625 >gi|238797842|ref|ZP_04641334.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969] gi|238718258|gb|EEQ10082.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969] Length = 804 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIKAFVEYLSKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEEYQMSLALDG 563 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|304398065|ref|ZP_07379940.1| DNA gyrase, B subunit [Pantoea sp. aB] gi|304354351|gb|EFM18723.1| DNA gyrase, B subunit [Pantoea sp. aB] Length = 802 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L +T+ R+ + Q + G+P SPL + + GTR+ F P + F + Sbjct: 121 SVVNALSQKLELTIRREGKVHQQVYVHGVPQSPLAVTGET-DITGTRVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + F++ GG++ +++ +N Sbjct: 180 RDFEYDILAKRLRELSFLNSGVSIRLEDKRD-------GKNDHFHYEGGIRAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIG----AD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801 >gi|296118608|ref|ZP_06837186.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968507|gb|EFG81754.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306] Length = 666 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 237/677 (35%), Positives = 353/677 (52%), Gaps = 67/677 (9%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL EV+DN++DE +AG+A+ + V L +G + V D+GRGIPV H Sbjct: 1 MYIGSTGPRGLHHLIWEVVDNSVDEAMAGHASKVIVRLMEDGGVEVTDDGRGIPVGMH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+++++T LHAGGKFD+ +Y ISGGLHGVGISVVNALS + + + Q Sbjct: 59 ASGAPTVQVVMTQLHAGGKFDSDSYAISGGLHGVGISVVNALSTRVEAEIKTDGKHWYQV 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F+ IP E GT+I F DP+IF +D + + Q A+L+ + Sbjct: 119 FNNSIPEELQE--GGNARGSGTKIRFWADPEIFESV-EYDYDTIARRLQEMAFLNKGLTI 175 Query: 244 CWSCDKEIAE-----------------------------------------------KYG 256 ++ E K Sbjct: 176 QLIDERVTKEQLDLEAIADAESGEKQLDETSFDDEEVDDFVEEGAVTPAPVETSGSSKKK 235 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315 + +K +++P GL Y++ + +S I + + VE A+ W + Sbjct: 236 LQKKVTYHYPDGLIDYVKFLNKTKSAIHPTVVAFDVKGN---EHEVEVAMQWNQGYKEST 292 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVF 373 ++ NTI T EGGTHE G R ALT + +YA+ + ++ S+ DD ++S+ Sbjct: 293 HTFANTINTYEGGTHEEGFRSALTSLMNRYAKEHKLMREKDGSLTGDDCREGLAAVVSLK 352 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + +P+F GQTKTKL + + + V+ A+ + + + NP EA ++ + S+ R+ R Sbjct: 353 VADPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEAKAIVNKAVASSQARVAAR 412 Query: 434 KQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K RE V RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ QA+LPL Sbjct: 413 KARELVRRKSATDLGGLPGKLADCRTKDPKISELYIVEGDSAGGSAKGGRDSMFQAILPL 472 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552 RGKILNV A +K+ N ++ ++ ALG ++ LRY K+++M DADVDG HIA Sbjct: 473 RGKILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDITKLRYNKIVLMADADVDGQHIA 532 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEEFKKHGKGK 611 +LLLT ++ M L+E+ H++L +PPL+++ G K YA+ + + ++LEE G+ Sbjct: 533 TLLLTLLFRFMPQLVEEGHVYLANPPLYKLKWGKGKPGYAYSDAERDELLEEGLNAGRKI 592 Query: 612 IE---ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKAD 668 + I R+KGLGEM AS+L ET +D + R L RV DL + + + LMG Sbjct: 593 NKDDGIQRYKGLGEMNASELWETTLDPSNRILRRV----DLEDAQRADELFSILMGDDVA 648 Query: 669 ERFKFIQERASFIDDVG 685 R FI RA + + Sbjct: 649 ARRSFITRRAKDVRFLD 665 >gi|238750286|ref|ZP_04611788.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380] gi|238711519|gb|EEQ03735.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380] Length = 804 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|226950184|ref|YP_002805275.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A2 str. Kyoto] gi|226841974|gb|ACO84640.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum A2 str. Kyoto] Length = 651 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 228/660 (34%), Positives = 355/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ +K GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGIILKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL+++ +G KSVY +++E QK ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNDEELQKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|227495521|ref|ZP_03925837.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831068|gb|EEH63451.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 704 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 235/701 (33%), Positives = 344/701 (49%), Gaps = 53/701 (7%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 AS +Y A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE + G+ + Sbjct: 6 KNDASQSYTARHLTVLEGLEAVRKRPGMYIGSTDHRGLMHCLWEIIDNAVDEALEGHCDH 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L + ++ DNGRGIPV+ K N S +E++ T LHAGGKF +Y SGGLHG Sbjct: 66 IVVTLHDDYSASISDNGRGIPVDTV-KGLNLSGVEVVFTKLHAGGKFGAGSYGSSGGLHG 124 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKK 196 VG SVVNALS L V V R F RG P S LE Sbjct: 125 VGASVVNALSARLDVQVDRGGKTHQMSFRRGEPGIFDDSKQRTPNSPFTPFLDESKLEIV 184 Query: 197 EKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 KV+ GTR+ F D +IF GF L++ + A+L + ++ Sbjct: 185 GKVKRGVSGTRVRFWADFQIFPADEGFSWNSLVERARQTAFLVPGLTLTVIDERGEERVE 244 Query: 256 GIPEKE-------EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG---THRGTVEWA 305 + + +F G T + + E++ V+ A Sbjct: 245 EVLRFDGGVVDFVDFLAKDGPVTDTLHIKGEGTFKELVPLVEEGERRVAELERVCEVDIA 304 Query: 306 IAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISIIS 359 + W S+ N + T +GGTH G AL + ++ + E K + + Sbjct: 305 MRWGVGYDTIDRSFVNIVATPKGGTHVQGFEQALVKVVRAHVEKNARKFKVNAKDGRVEK 364 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL- 418 DD++ +++V EP+F GQTK L + ++ V + D F N E + Sbjct: 365 DDILAGLTYVVTVRFPEPQFEGQTKEILGTAPVRQVVSKVVTDFFKERFSSNKREIKQTN 424 Query: 419 ---LEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSA 474 +E ++ + R+ R +E++R+ A+ LP KLADC N +ELFIVEGDSA Sbjct: 425 DALMEKIVGEMKARVSARIHKEISRRKNALETSSLPAKLADCRSNDVEQSELFIVEGDSA 484 Query: 475 GGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLR 534 G+AK AR+ QA+ P+RGKILNV + + N + ++Q +G + + R Sbjct: 485 LGTAKFARSSEYQALFPIRGKILNVQKKSTADMLANAECAAIIQVIGAGSGRTFDLSQAR 544 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKS 588 Y K+++MTDADVDGAHI +LLLT F++ M L+E ++ PPL RI + + Sbjct: 545 YGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVPKQGKKPKEL 604 Query: 589 VYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647 +Y + EE + L + K+ G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 605 IYTYSEEELHQKLAQLKRQGRTYKEPIQRYKGLGEMDADQLAETTMDPAHRTLRRITLAD 664 Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 + +LK ++ LMG++ R +FI AS +D + Sbjct: 665 E-AALKQAEEMFELLMGSEVVPRKEFIVAGASELDRSQIDA 704 >gi|183597169|ref|ZP_02958662.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827] gi|188023483|gb|EDU61523.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827] Length = 804 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R + Q + G P PL + ++ GTR+ F P F Sbjct: 121 SVVNALSEKLELTIRRDGKVHEQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ N Sbjct: 180 TEFEYDVLAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYEGGIKAFVEYLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + + Y N I +GGTH +G R ++ Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYMDKEGYQKKAKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + F YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETMMNERFVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ + L G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDEYLISIALDG 563 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L + + + + R+KGLGEM QL ET M+ + R ++RV + + T Sbjct: 719 FEEALAWLSRESRRGLSVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|290473098|ref|YP_003465959.1| DNA gyrase subunit B (type II topoisomerase) [Xenorhabdus bovienii SS-2004] gi|289172392|emb|CBJ79159.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus bovienii SS-2004] Length = 804 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 224/582 (38%), Positives = 343/582 (58%), Gaps = 18/582 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHTDNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GT + F P F Sbjct: 121 SVVNALSEKLELIIRRDGKVHEQTYQHGVPQAPLKTVGDT-EQTGTTVRFWPSMDTFKLN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V + AE + F++ GG+K +++ N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAE-------DHFHYEGGIKAFVEFLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE ++ W + I + N I +GG H G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAM 289 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K I+ DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYNKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETQMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 PPL+++ +G + Y D++ + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEAYQMSIALDGASLYTNQY 571 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET M+ R ++RV + + T Sbjct: 719 FEQALEWLTKESRRGLSIQRYKGLGEMNPDQLWETTMNPETRRMMRVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|146309671|ref|YP_001174745.1| DNA gyrase subunit B [Enterobacter sp. 638] gi|145316547|gb|ABP58694.1| DNA gyrase subunit B [Enterobacter sp. 638] Length = 804 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ G+ ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHGDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ Q +S G+P +PL GT + F P + F + Sbjct: 121 SVVNALSQKLELVIYREGKAHHQVYSHGVPQAPLAVTGDTEK-TGTTVRFWPSHETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GG H G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGAHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPARSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLYIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|330899871|gb|EGH31290.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 634 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 239/654 (36%), Positives = 364/654 (55%), Gaps = 28/654 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 2 ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARS 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGLHG Sbjct: 59 VQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VGISVVNALS ++ V V R + F+ G + L V + GT + F PDPK Sbjct: 118 VGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F +RL + ++KA L + + EK E+++ GL++YLQ Sbjct: 178 FDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------SSGEKVEWHYEDGLRSYLQD 229 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESG 333 + + F G + V+WA+ W E + SY N I T +GGTH +G Sbjct: 230 SVTEFLRLPDGPFCGSFTGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S +A Sbjct: 287 LRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V ++D F +L + +L + I + RL+ ++V RK + LPGK Sbjct: 347 AAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALPGK 404 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ +Q+ Sbjct: 405 LADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQE 464 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 + ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ H+ Sbjct: 465 VHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHV 523 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ET Sbjct: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 584 TMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|47779376|gb|AAT38605.1| predicted topoisomerase IV subunit B [uncultured gamma proteobacterium eBACHOT4E07] Length = 630 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 235/646 (36%), Positives = 362/646 (56%), Gaps = 23/646 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A + YD+ +I +L GL+PV+ RPGMY TD +HL EV+DN++DE I+G+ I++ Sbjct: 2 AKNTYDSKAIEVLSGLDPVKKRPGMY---TDTSCPNHLIQEVLDNSVDEAISGHCTNIKI 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +GF+ V D+GRG+PV+ HP+ S +E+IL LHAG KF Y SGGLHGVG+ Sbjct: 59 KIQKDGFINVSDDGRGMPVDIHPEH-KLSGVELILCKLHAGAKFSGDEYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218 SVVNALS+ L V + R + +FS G + L+ V GT I F+P+P F Sbjct: 118 SVVNALSESLQVNIKRDSKEHEMRFSNGDKKNELKVVGDVGLRNTGTSIKFKPNPDYFES 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 L + ++KA L + + + EK ++++ GLK+YL+ + + Sbjct: 178 D-KIKTNELKHLLKAKAVLCPGLTIDFHDE-------SKKEKIKWFYEDGLKSYLEDQSD 229 Query: 279 NRS-LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 ++S I + + K + W + +N +Y N I T +GG+H +G + Sbjct: 230 GIDLILSESIVSSNSSKDQEVEFVINWT-SKPYKNKLDETYVNLIPTAQGGSHLNGFKSG 288 Query: 338 LTRGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L +K++ E + + + I +DD++ +A+ ++S ++ P+FAGQTK +L S D V Sbjct: 289 LLDALKEFCEYRSLLPKGLKINADDVINNAIFVVSSKMQNPQFAGQTKERLDSKDHMTFV 348 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + +D + ++ E K+ E I ++ R++ E + + LPGKL+DC Sbjct: 349 SGSTKDILSIWFNKHTEEGEKIAELAIISAQARVKASSTVERKKT--FKGPALPGKLSDC 406 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN S +I +Q+I +L Sbjct: 407 NSEDLNKTELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 466 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + LRY K+ I+ DAD DG HIA+LL F + L+ +F+ Sbjct: 467 STAIGVLPGNADV-SSLRYGKICILADADSDGLHIATLLCALFLRHFKPLVNDGRIFIAM 525 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+R+ G + +YA DE K KI+++FK K GK KI I RFKGLGEM SQL+ET MD Sbjct: 526 PPLYRVDCGKEVLYALDELQKDKIVKDFKNKKGKPKINIQRFKGLGEMNPSQLRETVMDP 585 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+R+ I+ N+ ++K A R ++++++ S + Sbjct: 586 ESRQLVRLSISATDNANAMMDLLLSK---KNAPARKEWLEKKGSLV 628 >gi|170718151|ref|YP_001785179.1| DNA gyrase subunit B [Haemophilus somnus 2336] gi|168826280|gb|ACA31651.1| DNA gyrase, B subunit [Haemophilus somnus 2336] Length = 807 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 238/583 (40%), Positives = 354/583 (60%), Gaps = 20/583 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ ++NY A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SENTTENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S ++I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHADNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALSD+L +T+ RQ + Q + G P PL + GT + F P P I Sbjct: 121 GVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETEK-TGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V + ++ F++ GG+K +++ Sbjct: 180 FTNI-DFEYEILAKRLRELSFLNSGVSIKLLDKR-------NDRQDHFHYEGGIKAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +N++ I +IF EK VE A+ W + + + N I +GGTH +G Sbjct: 232 LNKNKTPIHQKIFYFSAEKDDI---GVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + KY ++K+ I+ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRILNKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSE 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450 + VE+ + D +L +NP +A ++ +IE + R RK R RK A+ LP Sbjct: 349 VRAPVESVMSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLP 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSS 468 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +LIE+ Sbjct: 469 QEVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIER 528 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 H+++ PPL+++ +G + Y D+E Q+ G Sbjct: 529 GHVYIAQPPLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLY 571 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +++G + ++ +E K + + I R+KGLGEM + QL ET MD NKRT+L Sbjct: 711 VSRGERQQSVSS---FEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 768 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 806 >gi|153212956|ref|ZP_01948550.1| DNA gyrase, subunit B [Vibrio cholerae 1587] gi|124116182|gb|EAY35002.1| DNA gyrase, subunit B [Vibrio cholerae 1587] Length = 805 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|262280518|ref|ZP_06058302.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202] gi|262258296|gb|EEY77030.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202] Length = 627 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 258/645 (40%), Positives = 373/645 (57%), Gaps = 28/645 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVHFWPETKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKIIYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSHGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASNIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFSLWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREDTELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY KV I+ DAD DG HIA+LL F + L+E+ HLF+ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D++ + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVYYALDDDELEVILKNVK--GNRNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R ++++++ + D Sbjct: 583 RRLVQLDLDDAHFTAGLLDKL---LAKKRSADRKQWLEQKGNLAD 624 >gi|21231148|ref|NP_637065.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768844|ref|YP_243606.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|21112786|gb|AAM40989.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574176|gb|AAY49586.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris str. 8004] Length = 634 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 243/642 (37%), Positives = 363/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A +EV+L Sbjct: 10 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 67 DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 126 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ +R L Sbjct: 185 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFEDGLRDYLKGEMADREL 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 238 LPADLFAGSLKKDTEI---VDWAAAWVPEGELTQESYVNLIPTAQHGTHVNGLRSGLTDA 294 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 295 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 354 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 355 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 412 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 413 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 472 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 473 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 531 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 532 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 591 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 592 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLETKGDLA 630 >gi|300854105|ref|YP_003779089.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528] gi|300434220|gb|ADK13987.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 213/659 (32%), Positives = 341/659 (51%), Gaps = 36/659 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YD +S+ LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ G+ + V+L Sbjct: 7 NVYDVNSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWELLDNAIDEISNGFGDRAYVTL 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G ++V DNGRGIP HP K+ +E++ T LH GGKF+NS Y+ SGGLHGVG +V Sbjct: 67 NKDGSVSVQDNGRGIPTGIHP-VKKKNGVEMVFTELHTGGKFNNSVYKTSGGLHGVGAAV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFR 210 VNALS + V V ++ ++ Q+F G P++ ++ + GT++TF Sbjct: 126 VNALSTWMEVEVRQKGHVYKQRFEYAYDKSLKKNMPGTPVTAIKVIGNTDD-TGTKVTFM 184 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 PD K+F F + + + A+ + + + ++ GL Sbjct: 185 PDNKVFSTT-DFKIDVIDERLKELAFQNKGITLKLIDNTGEERVERE-----YHSERGLL 238 Query: 271 TYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGG 328 ++ E+++ I + + E+K E + + + SY N I T E G Sbjct: 239 DFIDYLNESKTPIHKDPILFEGERKINDLSMYGEVCMQFTDSTTYHIASYVNNIPTTESG 298 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 THESG + +TR K++A+ ++ DDL I+ + I P F GQTKTK Sbjct: 299 THESGFKTGMTRAFKEWAKKLNLLKEKDKEFEGDDLREGMTAIVKIKITNPIFEGQTKTK 358 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 L + +A + + ++ N A+ ++ + + R + +K + +K Sbjct: 359 LGNTEAYTMMNDLAYTKLSEWIEDNKDIASAIINNALHAAARREKIKKINDAEKKKIGKG 418 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L GK+A C+ + E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E Sbjct: 419 AAPLAGKVAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLE 478 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++++ A+G Y E DLRY+K+II++DADVDG HI SL +T+ Y+ M Sbjct: 479 NVLGSEELKIFNTAIGTGILENYNESDLRYDKIIILSDADVDGYHIRSLWMTYIYRYMRQ 538 Query: 566 LIEQKHLFLISPPLFRI---TQGTKSV-YAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 LI HL++ PPL+++ +G + + YA+ +E ++ K + + R+KGLG Sbjct: 539 LISNGHLYIALPPLYKVYKQNKGKEVIKYAYSDETLPDAKKKIGK----GVLVQRYKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 EM QL ET ++ RTL ++ I+ + ++ LMG R K++ + A F Sbjct: 595 EMNPDQLWETTLNPETRTLQQITIDD----AAKAEKMVSLLMGDVVAPRKKYMYKYAQF 649 >gi|293393724|ref|ZP_06638032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera DSM 4582] gi|291423768|gb|EFE96989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera DSM 4582] Length = 804 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 351/574 (61%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I+V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S ++I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q +S G P +PL+ + + GT + F P + F ++ Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGET-EQTGTTVRFWPSYQTFTNQ 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPTVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ESLMNEKLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAMSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQIAIALDG 563 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDSVEPRRAFIEENALKAANID 803 >gi|238754008|ref|ZP_04615367.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473] gi|238707760|gb|EEQ00119.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473] Length = 804 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMSLALDG 563 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|254225547|ref|ZP_04919156.1| DNA gyrase, subunit B [Vibrio cholerae V51] gi|254291124|ref|ZP_04961921.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226] gi|125621867|gb|EAZ50192.1| DNA gyrase, subunit B [Vibrio cholerae V51] gi|150422969|gb|EDN14919.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226] Length = 805 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|153938307|ref|YP_001392050.1| DNA topoisomerase IV subunit B [Clostridium botulinum F str. Langeland] gi|170757231|ref|YP_001782378.1| DNA topoisomerase IV subunit B [Clostridium botulinum B1 str. Okra] gi|152934203|gb|ABS39701.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum F str. Langeland] gi|169122443|gb|ACA46279.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium botulinum B1 str. Okra] Length = 651 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGIKGLHHCIWEILDNAIDEISNGYGDTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ +K GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL+++ +G KSVY ++ E +K ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|254386996|ref|ZP_05002276.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1] gi|194345821|gb|EDX26787.1| DNA topoisomerase IV subunit B [Streptomyces sp. Mg1] Length = 706 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 236/687 (34%), Positives = 338/687 (49%), Gaps = 53/687 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + GY + IEV L Sbjct: 21 SNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVIL 80 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V DNGRGIPV+ PK S +E+++T LHAGGKF +Y SGGLHGVG SV Sbjct: 81 HEDSSVEVRDNGRGIPVDVEPK-TGLSGVEVVMTKLHAGGKFGGGSYAASGGLHGVGASV 139 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV---------------RNKRGTR 206 VNALS L V V R ++ + F RG+P E+ + K GTR Sbjct: 140 VNALSARLDVEVDRNSSTHAISFRRGVPGMFTEQGPDSPFDPANGLRKVKRVAKGKTGTR 199 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + + D +IF A L + + A+L + ++ I E F F Sbjct: 200 VRYWADRQIFLKDARLSLEHLYQRARQTAFLVPGLTLVVRDERGIDGAGKTE--ETFRFD 257 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCE 310 GG+ + + +++ + TG + T V+ A+ W Sbjct: 258 GGISEFCEYLAQDKGVCDVLRLTGAGTFKETVPVLDDRGHMTPTEVTRELGVDIALRWGT 317 Query: 311 ENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAV 367 S+ N I T +GGTH SG ++ + + + + R DD M Sbjct: 318 GYETNVKSFVNIIATPKGGTHVSGFERSVAKTVNEVLRSAKLLRVAEDDVVKDDAMEGMT 377 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER-- 425 +++V + EP+F GQTK L + A R V + +L + + V+E+ Sbjct: 378 AVVTVRLAEPQFEGQTKEVLGTSAATRIVAAVVAKELKAFLTSTKRDDKQQARSVMEKIV 437 Query: 426 ---SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 R+ + RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR Sbjct: 438 AAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGDSALGTAKLAR 497 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542 N QA+LP+RGKILNV + + N + ++Q +G + + + RY K++++ Sbjct: 498 NSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAGSGRTFDIDAARYGKIVLLV 557 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEH 596 DADVDGAHI LLLT F + M ++E +F PPL RI +G K VY + + Sbjct: 558 DADVDGAHIRCLLLTLFQRYMRPMVEAGRVFAAVPPLHRIELVQPKKGQDKYVYTYSDNE 617 Query: 597 KQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L EF +K+ + K I R+KGLGEM A QL ET MD RTL R+ I L Sbjct: 618 LRQTLLEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPRFRTLRRINIGD----LDSA 673 Query: 656 QDSINKLMGTKADERFKFIQERASFID 682 + + LMG + R +FI A+ +D Sbjct: 674 EQVFDLLMGNEVAPRKEFITGSAATLD 700 >gi|238793146|ref|ZP_04636774.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909] gi|238727519|gb|EEQ19045.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909] Length = 804 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG++ +++ +N Sbjct: 180 IEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIRAFVEYLSKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|294626653|ref|ZP_06705250.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599073|gb|EFF43213.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 629 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 240/642 (37%), Positives = 360/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A ++V+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVDVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ L Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGPA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625 >gi|302875224|ref|YP_003843857.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans 743B] gi|307688905|ref|ZP_07631351.1| DNA topoisomerase IV subunit B [Clostridium cellulovorans 743B] gi|302578081|gb|ADL52093.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans 743B] Length = 643 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 204/656 (31%), Positives = 333/656 (50%), Gaps = 32/656 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++YD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY N + + L Sbjct: 3 NSYDVTSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCLWEILDNSIDEITNGYGNKVTIIL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +T++DNGRG+P HP K+ +E++ T LH GGKF++S Y+ SGGLHGVG +V Sbjct: 63 NKDKSITIMDNGRGVPTGIHP-IKKKTGVEMVYTELHTGGKFNSSNYKTSGGLHGVGAAV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKRGTRITFRP 211 VNALS L V V + IF Q+F + N+ GT++TF P Sbjct: 122 VNALSKWLEVEVCQDGKIFKQRFEYAYDKKLKKVMPGTAVTNLEVIGQTNETGTKVTFLP 181 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D ++F + + + ++ + + D+ ++E++ GL Sbjct: 182 DKEVFSTI-DIKFDTVDERLKEISFQNKGIFLELIDDR-----GEEQVRKEYFSERGLLD 235 Query: 272 YLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGT 329 ++ E ++ + E E++ G + E + + + I SY N I T E GT Sbjct: 236 FIDYLNEAKTCLHKEPILISGEREIGNVKMYAEVCMQFTDSTTETIMSYVNNIPTTEAGT 295 Query: 330 HESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 HE+G + +TR K + + +DL I+ + + P F GQTKTKL + Sbjct: 296 HETGFKTGMTRAFKDCGKKFGIIKDKDFDGEDLREGLTAIVKINLTNPIFEGQTKTKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI-ERSEERLRRRKQREVNRKTAIRKLR 448 +A + + ++ N A+ + + + + ++ +K Sbjct: 356 SEATTMMNDLSYTKLCQWIEDNKELASMFINNALATAARKEKIKKINELERKKVGKGAAP 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 L GK+A C+ +E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E + Sbjct: 416 LAGKIAVCTSKDKAISEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVL 475 Query: 509 NNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 ++++ A+G Y E+DL+Y+K+IIM+DADVDG HI +L +T+ Y+ M LI Sbjct: 476 GSEELKIFNTAIGTGILDAYDEKDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIA 535 Query: 569 QKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 HL++ PPL+++ +G YA+ ++ + + +E K I R+KGLGEM Sbjct: 536 NGHLYMAQPPLYKVYKESKKGEIHKYAYSDDELESVKKEIGKGAL----IQRYKGLGEMN 591 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 QL +T ++ RTL ++ I + ++ LMG + R ++ + A F Sbjct: 592 PEQLWQTTLNPETRTLYQITIED----AAKAEKMVSLLMGEVVEPRKNYMYKYAEF 643 >gi|21242463|ref|NP_642045.1| DNA topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|325924935|ref|ZP_08186364.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118] gi|21107909|gb|AAM36581.1| topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|325544658|gb|EGD16012.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118] Length = 629 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A +EV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ L Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKMKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625 >gi|290511692|ref|ZP_06551060.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55] gi|289775482|gb|EFD83482.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55] Length = 806 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R N + Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIALDG 563 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD + R +LRV + + Sbjct: 721 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAI----AAD 776 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 777 QLFTTLMGDAVEPRRAFIEENALKAANID 805 >gi|229530199|ref|ZP_04419588.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)] gi|229332332|gb|EEN97819.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)] Length = 805 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I SQ + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|259910292|ref|YP_002650648.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96] gi|224965914|emb|CAX57447.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96] gi|310765871|gb|ADP10821.1| DNA gyrase subunit B [Erwinia sp. Ejp617] Length = 802 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q + G+P + L + + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + +++ GG+K +++ +N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL+++P +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801 >gi|28198449|ref|NP_778763.1| DNA topoisomerase IV subunit B [Xylella fastidiosa Temecula1] gi|182681122|ref|YP_001829282.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M23] gi|28056533|gb|AAO28412.1| topoisomerase IV subunit B [Xylella fastidiosa Temecula1] gi|182631232|gb|ACB92008.1| DNA topoisomerase IV, B subunit [Xylella fastidiosa M23] Length = 629 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 242/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AGYAN IEV+L Sbjct: 5 YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNGRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G +S L+ V + GTR+ F PD K F F Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E ++F GL+ YL+ ++ L Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +E+F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R I + +D+ +LS+ + +P+F+GQTK +L S A +E+ + Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L QN + + IER+ RL+ +++V RK LPGKLADC Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + + ++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY K++I+ DAD DG HIA+LL F + L+ H+F+ PPLF Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA D+E K +LE+ ++ KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+++ ++ + + L +A +R ++++ + + + Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628 >gi|15640047|ref|NP_062599.1| DNA gyrase subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727887|ref|ZP_01680946.1| DNA gyrase, subunit B [Vibrio cholerae V52] gi|147673680|ref|YP_001218397.1| DNA gyrase subunit B [Vibrio cholerae O395] gi|153819850|ref|ZP_01972517.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457] gi|153821919|ref|ZP_01974586.1| DNA gyrase, subunit B [Vibrio cholerae B33] gi|227080252|ref|YP_002808803.1| DNA gyrase, subunit B [Vibrio cholerae M66-2] gi|229508300|ref|ZP_04397804.1| DNA gyrase subunit B [Vibrio cholerae BX 330286] gi|229508861|ref|ZP_04398352.1| DNA gyrase subunit B [Vibrio cholerae B33] gi|229517132|ref|ZP_04406578.1| DNA gyrase subunit B [Vibrio cholerae RC9] gi|229606574|ref|YP_002877222.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236] gi|254851580|ref|ZP_05240930.1| DNA gyrase subunit B [Vibrio cholerae MO10] gi|255746803|ref|ZP_05420749.1| DNA gyrase subunit B [Vibrio cholera CIRS 101] gi|262155882|ref|ZP_06029004.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1] gi|262167103|ref|ZP_06034818.1| DNA gyrase subunit B [Vibrio cholerae RC27] gi|298501200|ref|ZP_07010999.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757] gi|11386840|sp|Q9KVX3|GYRB_VIBCH RecName: Full=DNA gyrase subunit B gi|9654406|gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629831|gb|EAX62246.1| DNA gyrase, subunit B [Vibrio cholerae V52] gi|126509611|gb|EAZ72205.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457] gi|126520539|gb|EAZ77762.1| DNA gyrase, subunit B [Vibrio cholerae B33] gi|146315563|gb|ABQ20102.1| DNA gyrase, subunit B [Vibrio cholerae O395] gi|227008140|gb|ACP04352.1| DNA gyrase, subunit B [Vibrio cholerae M66-2] gi|227011982|gb|ACP08192.1| DNA gyrase, subunit B [Vibrio cholerae O395] gi|229346195|gb|EEO11167.1| DNA gyrase subunit B [Vibrio cholerae RC9] gi|229354136|gb|EEO19068.1| DNA gyrase subunit B [Vibrio cholerae B33] gi|229354573|gb|EEO19495.1| DNA gyrase subunit B [Vibrio cholerae BX 330286] gi|229369229|gb|ACQ59652.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236] gi|254847285|gb|EET25699.1| DNA gyrase subunit B [Vibrio cholerae MO10] gi|255735560|gb|EET90959.1| DNA gyrase subunit B [Vibrio cholera CIRS 101] gi|262024489|gb|EEY43175.1| DNA gyrase subunit B [Vibrio cholerae RC27] gi|262030334|gb|EEY48976.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1] gi|297540072|gb|EFH76134.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757] Length = 805 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I SQ + G+P +PL + + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGET-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|113461844|ref|YP_719913.1| DNA gyrase subunit B [Haemophilus somnus 129PT] gi|112823887|gb|ABI25976.1| DNA gyrase subunit B [Haemophilus somnus 129PT] Length = 807 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 238/583 (40%), Positives = 354/583 (60%), Gaps = 20/583 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ ++NY A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SENTTENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S ++I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHADNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALSD+L +T+ RQ + Q + G P PL + GT + F P P I Sbjct: 121 GVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETEK-TGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V + ++ F++ GG+K +++ Sbjct: 180 FTNI-DFEYEILAKRLRELSFLNSGVSIKLLDKR-------NDRQDHFHYEGGIKAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +N++ I +IF EK VE A+ W + + + N I +GGTH +G Sbjct: 232 LNKNKTPIHQKIFYFSAEKDDI---GVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKY---AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + KY ++K+ I+ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRVLNKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSE 348 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450 + VE+ + D +L +NP +A ++ +IE + R RK R RK A+ LP Sbjct: 349 VRAPVESVMSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLP 408 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 GKLADCQERDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSS 468 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +LIE+ Sbjct: 469 QEVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIER 528 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 H+++ PPL+++ +G + Y D+E Q+ G Sbjct: 529 GHVYIAQPPLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLY 571 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +++G + ++ +E K + + I R+KGLGEM + QL ET MD NKRT+L Sbjct: 711 VSRGERQQSVSS---FEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 768 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 806 >gi|229520187|ref|ZP_04409614.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80] gi|229342781|gb|EEO07772.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80] Length = 805 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|153826434|ref|ZP_01979101.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2] gi|229515946|ref|ZP_04405403.1| DNA gyrase subunit B [Vibrio cholerae TMA 21] gi|149739820|gb|EDM54015.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2] gi|229347046|gb|EEO12008.1| DNA gyrase subunit B [Vibrio cholerae TMA 21] Length = 805 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|325924529|ref|ZP_08186048.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865] gi|325545024|gb|EGD16359.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865] Length = 629 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 239/642 (37%), Positives = 362/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A +EV+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVEVTLFK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDMHPE-EKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F GI S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGIAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + E++ ++F GL+ YL+ ++ + Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHD-------GATGEQDSWHFENGLRDYLKGEMAEHEM 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFAGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D++ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVLDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV I+ DAD DG HIA+LL F + L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-SGLRYGKVTILADADSDGLHIATLLTALFLRHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG++ ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRAGDRKQWLESKGDLA 625 >gi|294663738|ref|ZP_06729289.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606396|gb|EFF49590.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 629 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 241/642 (37%), Positives = 361/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A ++V+L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHAKQVDVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G S LE V + GTR+ F DPK F F Sbjct: 121 ALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWADPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E++ +YF GL+ YL+ ++ L Sbjct: 180 NVRALRHLLRAKAVLCPGLTVKLHDE-------ATGEQDSWYFENGLRDYLKGEMAEHEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGSLKKDTEI---VDWAAAWVPEGELVQESYVNLIPTAQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F YL QN K+ + I+R+ RL+ ++++ RK + LPGKLADC Sbjct: 350 HDAFSLYLNQNVEIGEKIAQIAIDRASARLK--TEKQIVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASEEVHNLAVAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F Q L+ H+F+ PPLF Sbjct: 468 GCDPGKDDI-TGLRYGKVVILADADSDGLHIATLLTALFLQHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA DEE K +L++ + KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDEEEKTTLLDKIAREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ I+ + L +A +R ++++ + Sbjct: 587 LVQLTIDDGEQTRSLMDML---LAKKRASDRKQWLETKGDLA 625 >gi|123444339|ref|YP_001008304.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091300|emb|CAL14186.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 804 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|121587244|ref|ZP_01677017.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80] gi|121548490|gb|EAX58546.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80] Length = 805 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|134094035|ref|YP_001099110.1| DNA topoisomerase IV subunit B [Herminiimonas arsenicoxydans] gi|133737938|emb|CAL60983.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) [Herminiimonas arsenicoxydans] Length = 661 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 254/674 (37%), Positives = 366/674 (54%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + +S +Y SSIR+L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MATKKSSADYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151 I V+L+ +G ++V D+GRGIPV HP+ T+EI+ T LHAGGKFD S+ Y S Sbjct: 58 KHIVVTLNTDGSVSVEDDGRGIPVGLHPE-EKIPTVEIVFTRLHAGGKFDKSSGGAYAFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN--KRGTRITF 209 GGLHGVG+SV NALS L +TV R++ + + FS G + PL+ + R+ + GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLEITVWRESGVHTLTFSGGDVIEPLKSRAIARDEKRSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDPK F A L ++ +SKA L VK K E + + + GL Sbjct: 177 WPDPKYFDSSV-IPQAELQRLLRSKAVLLPGVKVTLVHAKS-------GETQTWQYDQGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCEENP-EITSYCNT 321 + YL L S + I + E+ W +AW E+ SY N Sbjct: 229 RGYLTESLAQASNAETVIPLFEGEQYANADTEGFAEGEGAAWVVAWTEDGAVVRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K + E+ + + ++ +D+ +LS + +P+F Sbjct: 289 IPTSNGGTHESGLREGLFGAVKSFVEMHSLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V R + +L Q+ KL E VI++++ RLR ++ E + Sbjct: 349 GQIKERLNSRDAVRLVATYTRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQKVEKKK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC + E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESSDTSRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 +++ N +I D+ A+G + D LRY ++ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEIHDIAVAIGIDPHGKNDTVDFSSLRYGRICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPL+R+ +G K +YA D+ I ++ +K G + Sbjct: 527 LFFKHFPQLIERGHICIARPPLYRVDAPARGKKPIQKIYALDDGELAAIEDKLRKDGVKE 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 ISRFKGLGEM A QL ET M+ + R LL V + + + N LMG +A Sbjct: 587 SAWAISRFKGLGEMNAEQLWETTMNPDTRRLLPVALGEFDLDFSEA--RFNMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +I+E + + Sbjct: 645 ARRTWIEEHGNEAE 658 >gi|330886496|gb|EGH20237.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv. mori str. 301020] Length = 634 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 369/656 (56%), Gaps = 29/656 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 AN SAS +Y+A +I +L GL+PVR RPGMY TD +HL EVIDN++DE +AG+A Sbjct: 1 MANPSAS-SYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 ++V L + L V D+GRG+PV+ HP+ S +E+ILT LHAGGKF N Y+ SGGL Sbjct: 57 RSVQVILHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGL 115 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVGISVVNALS ++ V V R + F+ G + L V + GT + F PDP Sbjct: 116 HGVGISVVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVIGTVGKRNTGTSVYFAPDP 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F F +RL + ++KA L + + EK E+++ GL++YL Sbjct: 176 KYFDTP-KFSVSRLKHVLKAKAVLCPGLLVSFEDK-------STNEKVEWHYEDGLRSYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHE 331 Q + + + E F G + V+WA+ W E + SY N I T +GGTH Sbjct: 228 QDSVSDFLRLPDEPFCGSFAGN---KEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR L ++++ E R + + +D+ +LS+ ++EP+F+GQTK +L S Sbjct: 285 NGLRQGLLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 +A V ++D F +L + +L + I + RL+ ++V RK + LP Sbjct: 345 EAAAFVSGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLK--ASKKVERKRITQGPALP 402 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC+ +ELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN ++ + Sbjct: 403 GKLADCAGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLAS 462 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 Q++ ++ A+G + LRY K+ I+ DAD DG HIA+LL F Q L++ Sbjct: 463 QEVHNIAVAIGVDPGAADI-SQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAG 521 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLK 629 H+++ PPL+RI G + YA DE + IL+ + +GK +++RFKGLGEM QL+ Sbjct: 522 HVYVAMPPLYRIDLGKEIYYALDESERDGILDRLVAEKKRGKPQVTRFKGLGEMKPPQLR 581 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDV 684 ET MD N R L+++ ++ T + ++ L+ K A +R +++ + + + + Sbjct: 582 ETTMDPNTRRLVQLTLDD----FAATSEMMDMLLAKKRAGDRKSWLESKGNLAEVL 633 >gi|322807083|emb|CBZ04657.1| topoisomerase IV subunit B [Clostridium botulinum H04402 065] Length = 651 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 227/660 (34%), Positives = 354/660 (53%), Gaps = 36/660 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YD + + LE LEPVR+RPGMYIG T K LHH E++DNA+DE+ GY + EV Sbjct: 8 TKDYDVTKLTSLEKLEPVRVRPGMYIGSTGLKGLHHCIWEILDNAIDEISNGYGDTAEVI 67 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ + +TVVDNGRGIP HP KS +E++ T LH GGKF+NS Y+ SGGLHGVG S Sbjct: 68 LNKDKSVTVVDNGRGIPTGIHP-IKKKSGVEMVFTELHTGGKFNNSIYKTSGGLHGVGAS 126 Query: 161 VVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITF 209 VVNALS+ V V + + I+ Q+F G P++ L+ +K GTR+TF Sbjct: 127 VVNALSEWTEVEVYQNDKIYKQRFEYALDKKLNKKMPGTPVTKLKIVGDT-DKTGTRVTF 185 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PD ++F F + + Q A+ + + +++ PE +E++ GL Sbjct: 186 KPDKEVFST-IDFKFDVIDERLQELAFQNKGITLKLIDNRK-----EEPEIKEYHSERGL 239 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++ E+++ I + + EK+ + E + + + I SY N I T E Sbjct: 240 LDFIDYLNESKAPIHNPAVLFEGEKEINNLKMEGEICFQFTDSSTENIASYVNNIPTTEA 299 Query: 328 GTHESGLRVALTRGIKK--YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTHE+G + +TR K+ ++ DDL I+ + I P F GQTKT Sbjct: 300 GTHETGFKTGMTRAFKEGAKKLSLIKEKDKEFDGDDLREGITAIVRIKISNPVFEGQTKT 359 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KL + +A + + F ++ N +T ++ + + R + +K E +K Sbjct: 360 KLGNNEAYTMMNDLAYSKFLEWIEDNKEVSTLIINNALAAAARREKIKKINEAEKKKIGK 419 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L GK+A C+ ++ TE +VEGDSAGGSAKQAR+R Q+++P +GKI+N Sbjct: 420 GLAPLAGKIAVCTLRDSNVTEFIVVEGDSAGGSAKQARDRRFQSIMPSKGKIMNTEKQKI 479 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 E + ++++ A+G Y+EEDL+Y+K+II++DADVDG HI +L +T+ Y+ M Sbjct: 480 ENVLGSEELKIFNTAIGTGVLDNYKEEDLKYDKIIILSDADVDGYHIRTLWMTYIYRYMK 539 Query: 565 DLIEQKHLFLISPPLFRI----TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 L+ HL++ PPL+++ +G KSVY ++ E +K ++ + I R+KGL Sbjct: 540 SLVANGHLYIAMPPLYKVYKKDKKGEKSVYCYNNEELEKAKKQIGR----GYLIQRYKGL 595 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM QL ET ++ RTL R+ I + ++ LMG + R ++ + A F Sbjct: 596 GEMNPEQLWETTLNPETRTLQRITIED----AAKAEKMVSLLMGDVVEPRKNYLYKYAEF 651 >gi|261346739|ref|ZP_05974383.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541] gi|282565139|gb|EFB70674.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541] Length = 804 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G P PL + ++ GTR+ F P F Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE-------DHFHYDGGIKAFVEYLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + + + N I +GGTH +G R A+ Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEVAMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYMEKEGYQKKTKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E L G Sbjct: 530 AQPPLYKVKRGKQEQYIKDDEAMDDYLISIALDG 563 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ + + + + R+KGLGEM QL ET M+ + R ++RV + + T Sbjct: 719 FEQALDWLSRESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|37524036|ref|NP_927380.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783459|emb|CAE12299.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 804 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 230/579 (39%), Positives = 346/579 (59%), Gaps = 18/579 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + + V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSEVIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P SPL+ + + GTR+ F P F D Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGET-EQTGTRVRFWPSMDTFRDN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQHDILAKRLRELSFLNSGVSIRLIDKRTNIE-------DHFHYEGGIKAFVEFLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE ++ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD V ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDEYQLSIALDGASLYT 568 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L K + + I R+KGLGEM QL ET M+ R ++RV + + T Sbjct: 719 FEQALNWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|153802491|ref|ZP_01957077.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3] gi|124121961|gb|EAY40704.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3] Length = 805 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DEE + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQYQVALAMDG 564 Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L+ K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERVQPISS---FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|297625214|ref|YP_003686977.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920979|emb|CBL55516.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 680 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 258/674 (38%), Positives = 370/674 (54%), Gaps = 19/674 (2%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 + +K + + S Y A I++LEGLE VR RPGMYIG T E+ LHHL E+ Sbjct: 15 EDEKRMDALTLTDTEDDSVDGEYGADEIQVLEGLEAVRKRPGMYIGSTGERGLHHLVREI 74 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN++DE +AGYA+ IEV+L G VVDNGRGIPV HP + STL ++LT LHAGG Sbjct: 75 VDNSVDEALAGYADSIEVTLLNGGGCRVVDNGRGIPVAEHP-AEHISTLTLVLTVLHAGG 133 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF Y++SGGLHGVG SVVNALS V R + Q F+ G P++P+E+ E+ Sbjct: 134 KFGGGGYKVSGGLHGVGSSVVNALSSRFDADVYRDGYHWHQSFTLGDPVAPVERLEET-E 192 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEK 260 + GT ITF P IF F L + A+L+ ++ + ++ + ++ G Sbjct: 193 RTGTTITFYPSADIFET-TDFSYETLATGFREIAFLNKGLRIAITDERTDHVDEDGKQLH 251 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 + F F GL Y+ NR ++ I + VE A+ W + ++ Sbjct: 252 DVFKFDNGLVDYVTFLNGNRETMTPVIDVEAHAPEVGM--GVEVAMQWNTSYVTSLHTFA 309 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 NTI T EGGTHE G R ALT I K+ E KR + +DD+ I+SV + P Sbjct: 310 NTINTREGGTHEEGFRAALTTTINKWGENWGLIKKREDRVSNDDIREGLTAIVSVKLVNP 369 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKT+L + +A+ V+ A+ + ++ QNP + ++ + R+ RK R+ Sbjct: 370 QFEGQTKTRLGNTEARGFVQRAVNERLGDWMEQNPGDGKLIVRKAQAAASARIAARKARD 429 Query: 438 V--NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 + NRK + LPGKLADCS N E+FIVEGDSAGGSAK RN QA+LPLRGK Sbjct: 430 MARNRKGLLGSGGLPGKLADCSSNNPEECEIFIVEGDSAGGSAKGGRNPRIQAILPLRGK 489 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A ++ ++ I ++ ALG ++ LRY K+++M DADVDGAHI +LL Sbjct: 490 ILNVEKARIDRALQSETIEAIISALGTGVHEEFDINKLRYHKIVLMADADVDGAHIRTLL 549 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY-AHDEEHKQKILEEFKKHGKGKIE- 613 LT ++ M +LI+ +++L PPLFR+ A+++ + + ++ + GK Sbjct: 550 LTLLFRFMPELIDGGYVYLAQPPLFRLRWTNAPHELAYNDGERDSLRDKGLEAGKKLPSV 609 Query: 614 --ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 I R+KGLGEM A L T MD + R LL+V ++ + + LMG +ER Sbjct: 610 NPIQRYKGLGEMDAQDLWTTTMDPDNRILLQVNLDD----AARADQTFSILMGEDVEERR 665 Query: 672 KFIQERASFIDDVG 685 +FIQ A + + Sbjct: 666 RFIQRNAKDVRFLD 679 >gi|283480416|emb|CAY76332.1| DNA gyrase subunit B [Erwinia pyrifoliae DSM 12163] Length = 803 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 3 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q + G+P + L + + GTR+ F P + F + Sbjct: 122 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + +++ GG+K +++ +N Sbjct: 181 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL+++P +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 351 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 411 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 718 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALRAANID 802 >gi|292490133|ref|YP_003533028.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430] gi|292901137|ref|YP_003540506.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946] gi|291200985|emb|CBJ48124.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946] gi|291555575|emb|CBA24167.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430] gi|312174326|emb|CBX82579.1| DNA gyrase subunit B [Erwinia amylovora ATCC BAA-2158] Length = 802 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 222/566 (39%), Positives = 349/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q + G+P + L + + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + +++ GG+K +++ +N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKNDHYHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL+++P +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801 >gi|257454361|ref|ZP_05619624.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60] gi|257448264|gb|EEV23244.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60] Length = 629 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 248/646 (38%), Positives = 376/646 (58%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY ++S+ +LEGL+PVR RPGMY TD +HL EVIDN++DE +AG+A I V L Sbjct: 2 SNYTSTSLEVLEGLDPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGHAKNITVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F +S +E+ILT LHAGGKF Y++SGGLHGVGISV Sbjct: 59 HTDGSLSVEDDGRGMPTDIHPEF-KQSGIELILTRLHAGGKFSTDNYQVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS ++ VTV R +F+ +F G ++PL + KRGT + F + + + D Sbjct: 118 VNALSHKVDVTVWRNGEVFTMQFIDGNAVAPLAVAPSSNKKKRGTLVRFWVN-ETYFDSP 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L ++KA LS + + + + + + + F GL YL +L Sbjct: 177 KFNIKQLKHHLKAKAVLSAGLTITFINEIDGDK-------DVWQFTDGLSQYLTEQLVEE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F + K R + +AI W E SY N I T +GGTH +GLR + Sbjct: 230 ITLPEQPFVFNYDAKKGERAGLSFAICWLSEGGTPVQESYVNLIPTAQGGTHVNGLRTGI 289 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T +K++ EL R + + +D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 290 TDALKEFCELHNLLPRNVKLAPEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGVVQ 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L QN A ++ E I ++ +RL+ ++V RK + LPGKLADC Sbjct: 350 AFAKDGFSLWLNQNSEIAKQIAELAINKAGKRLK--SAKKVERKKITQGPALPGKLADCR 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N+ G ELF+VEGDSAGGSAKQAR+R QA++PLRGKILN + + +++I ++ Sbjct: 408 GNLRDGAELFLVEGDSAGGSAKQARDRHFQAIMPLRGKILNTWEVSPDTVLASEEIHNIA 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+K+ I+ DAD DG HIA+LL F + +++ HL++ P Sbjct: 468 IAIGVDPDSDDL-SELRYDKICILADADSDGLHIATLLCALFVKHFKAVVDAGHLYVAMP 526 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G + YA D + ++IL++ K+ K +I+RFKGLGEM A QL+ET M+ + Sbjct: 527 PLYRIDIGKEVEYALDNDELEQILKKVAKN--KKPQITRFKGLGEMSAEQLRETTMNPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ DL+ T ++ L+ K A +R +++++ + Sbjct: 585 RRLVQL----DLDDPTATDSVMDMLLAKKRASDRKTWLEQKGDLAE 626 >gi|152965502|ref|YP_001361286.1| DNA topoisomerase IV subunit B [Kineococcus radiotolerans SRS30216] gi|151360019|gb|ABS03022.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans SRS30216] Length = 693 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 234/696 (33%), Positives = 340/696 (48%), Gaps = 57/696 (8%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + D Y A+++ +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ Sbjct: 2 TPPSPTPDDKYTAANLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I+V L +G + V D+GRGIPV+ K S +E++ T LHAGGKF +Y SGG Sbjct: 62 CSRIDVVLRRDGSVEVRDDGRGIPVDA-EKRTGLSGVEVVFTHLHAGGKFGGGSYSASGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------------- 199 LHGVG SVVNALS L V V R ++ F RG P + Sbjct: 121 LHGVGASVVNALSARLDVEVDRGGKTYATSFRRGTPGRYAGEGPDADFTPETGLAVVGRA 180 Query: 200 -RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 R GTR+ + D +IF +A F L+ + ++L ++ ++ G Sbjct: 181 KRGVTGTRVRYWADRQIFLKEAAFSYEDLVARARQTSFLVPGLRIVLRDERS-----GEA 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302 +E F GG+ Y + + S G+ ++ T V Sbjct: 236 TEEVFQHDGGIGEYADFLTPDAPVTSVWRLQGEDTFTETVPVLDDSGHMSPQEVTRDCVV 295 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK----RAISI 357 + A+ W P + S+ N I T +GG+H SG L +KK + + R + Sbjct: 296 DIALRWGTGYDPTVRSFVNIISTPKGGSHLSGFEQGLHAAVKKQVDAQARRLKVGRDEKL 355 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD----AQRTVENALRDPFDHYLVQNPI 413 DD++ +++V + EP+F GQTK L + ++ VEN L F + Sbjct: 356 EKDDVLAGLTAVVTVRLAEPQFEGQTKEVLGTAAVRAIVRKVVENELGAVFASPKRDDKQ 415 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 EAT +L+ V+ + R+ R +E RK A+ LP KL DC + TELF+VEGD Sbjct: 416 EATAVLDKVVAEMKSRISARLHKETQRRKNALESSSLPAKLKDCRSDDVDNTELFLVEGD 475 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+A ARN QA+LPLRGKILNV A + N + ++Q +G + + Sbjct: 476 SALGTAMGARNSEYQALLPLRGKILNVQKASVTDMLKNAECASIIQVVGGGSGRSFDLSA 535 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGT 586 +RY K+++MTDADVDGAHI +LLLT F++ M LIE +F PPL R+ +G Sbjct: 536 VRYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLIEAGRVFAAVPPLHRLEVTQPGKKGK 595 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 + VY + + +++ + + G+ E R+KGLGEM QL ET M+ RTL RV + Sbjct: 596 EVVYTYSDAELRRVTADLNRRGRSYREPQRYKGLGEMDEDQLAETTMERQHRTLRRVTV- 654 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 LMG R FI A +D Sbjct: 655 ---ADGAVADRVFELLMGNDVAPRKDFIIAGAEKLD 687 >gi|157368284|ref|YP_001476273.1| DNA gyrase subunit B [Serratia proteamaculans 568] gi|157320048|gb|ABV39145.1| DNA gyrase, B subunit [Serratia proteamaculans 568] Length = 804 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I+V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S ++I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q ++ G P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIAMDG 563 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E ++ LE K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 717 ESFEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----A 772 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 ADQLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|71274921|ref|ZP_00651209.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa Dixon] gi|170729813|ref|YP_001775246.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M12] gi|71164653|gb|EAO14367.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa Dixon] gi|167964606|gb|ACA11616.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12] Length = 629 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 241/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AGYAN IEV+L Sbjct: 5 YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNGRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G +S L+ V + GTR+ F PD K F F Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E ++F GL+ YL+ ++ L Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +E+F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R I + +D+ +LS+ + +P+F+GQTK +L S A +E+ + Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L QN + + IER+ RL+ +++V RK LPGKLADC Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + + ++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY K++I+ DAD DG HIA+LL F + L+ H+F+ PPLF Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA D+E K +LE+ ++ KG++ ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDDEEKTILLEKIQREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+++ ++ + + L +A +R ++++ + + + Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628 >gi|296270359|ref|YP_003652991.1| DNA topoisomerase [Thermobispora bispora DSM 43833] gi|296093146|gb|ADG89098.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM 43833] Length = 690 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 230/700 (32%), Positives = 334/700 (47%), Gaps = 58/700 (8%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A Y A + +L+GLE VR RPGMYIG TD + L H E++DNA+DE ++GY Sbjct: 1 MTAVRAEAGYTARHLSVLDGLEAVRKRPGMYIGSTDSRGLMHCLWEIVDNAVDEALSGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 IEV L +G + V DNGRGIPV+ P+ +E++ T LHAGGKF +Y +GGL Sbjct: 61 TRIEVELYPDGSIEVRDNGRGIPVDIEPR-TGLPGVELVYTRLHAGGKFGGGSYGATGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-------------- 200 HGVG SVVNALS L V V R + F RG+P + + Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGRVHQISFRRGVPGIFDGEGPNAKFRKKSGLRDGGPTE 179 Query: 201 -NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 GTR+ + PD KIF A + + A+L + + Sbjct: 180 PGVTGTRVRWWPDRKIFLPDAEISLDEVRVRLRQTAFLVPGLTLMLRDGR-----GEEVV 234 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303 +E F F GG+ + + + + G + V+ Sbjct: 235 EETFAFQGGIAEFTEFLAPDEPVCDVLRLQGTGHFHETVPVLDEQGHMVLTEVERELEVD 294 Query: 304 WAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISD 360 A+ W + + S+ N I T +GGTH +G AL R + + T+ R I + Sbjct: 295 VALRWGKGYDTVVRSFVNVIATPKGGTHVAGFERALVRTVNEQLRETRLLRNGDEPVIKE 354 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D++ +++V + EP+F GQTK L + A R V + + + L Sbjct: 355 DVLEGLTAVVAVRMPEPQFEGQTKEILGTAAASRIVAHVVSRELKALFATPKRGQKQQLR 414 Query: 421 WVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 V+E+ R ++ RK+A+ LP KL DC + +ELFIVEGDSA Sbjct: 415 AVLEKIVAAAKARIAAREQRDNQRRKSALENSALPAKLVDCRSDDVERSELFIVEGDSAL 474 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 G+AK AR+ QA+LP+RGKILNV A + N + ++Q +G + + RY Sbjct: 475 GTAKLARDSEFQALLPIRGKILNVQKASVSDMLKNAECAAIIQVVGAGSGRTFDLSAARY 534 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT-----QGT-KSV 589 K+I+M DADVDGAHI LLLT F++ M +IE +F PPL RI +G K + Sbjct: 535 GKIILMADADVDGAHIRCLLLTLFHRYMRPMIEAGRVFAAVPPLHRIEILNPGKGQDKYL 594 Query: 590 YAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 Y + + ++L + ++ GK K + R+KGLGEM A QL ET MD R L RV I Sbjct: 595 YTYSDAELHRVLADLERRGKRWKEPVQRYKGLGEMDADQLAETTMDPRHRVLRRVRIED- 653 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 ++ + N LMG++ R +FI + A+ ID ++ Sbjct: 654 ---AEEAERIFNLLMGSEVGPRREFIVQNAAAIDRENIDA 690 >gi|332163518|ref|YP_004300095.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318608022|emb|CBY29520.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667748|gb|ADZ44392.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861742|emb|CBX71916.1| DNA gyrase subunit B [Yersinia enterocolitica W22703] Length = 804 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|15804293|ref|NP_290332.1| DNA gyrase subunit B [Escherichia coli O157:H7 EDL933] gi|25292809|pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518538|gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 str. EDL933] Length = 804 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R+ I Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ + + + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIXDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEG SAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGXSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDG 563 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|15837887|ref|NP_298575.1| DNA topoisomerase IV subunit B [Xylella fastidiosa 9a5c] gi|9106275|gb|AAF84095.1|AE003962_5 topoisomerase IV subunit B [Xylella fastidiosa 9a5c] Length = 629 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 243/646 (37%), Positives = 364/646 (56%), Gaps = 26/646 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AGYAN IEV+L Sbjct: 5 YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNGRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G +S L+ V + GTR+ F PD K F F Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E ++F GL+ YL+ ++ L Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +E+F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R I + +D+ +LS+ + +P+F+GQTK +L S A +E + Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIEGTV 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L QN ++ + IER+ RL+ +++V RK LPGKLADC Sbjct: 350 HDAFSLWLNQNVDIGEQIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + + ++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGNVLASDEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KV+I+ DAD DG HIA+LL F + L+ H+F+ PPLF Sbjct: 468 GCDPGKDNL-SGLRYGKVVILADADSDGLHIATLLTALFLKHFPALVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA D+E K +LE+ K+ KG++ ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYALDDEEKTMLLEKIKREKIKGQVSVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+++ ++ + + L +A +R ++++ + + + Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRASDRKQWLETKGNLAS-LD 628 >gi|322830737|ref|YP_004210764.1| DNA gyrase, B subunit [Rahnella sp. Y9602] gi|321165938|gb|ADW71637.1| DNA gyrase, B subunit [Rahnella sp. Y9602] Length = 804 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 224/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I+V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S ++I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + +Q + G P PL+ + GT + F P F + Sbjct: 121 SVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTTVRFWPSFNTFTNH 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + F++ GG+K +++ +N Sbjct: 180 TEFEYEILAKRLRELSFLNSGVAIRLLDKRD-------GKNDHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPTVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQISIAMDG 563 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD +R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPEQRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|189423086|ref|YP_001950263.1| DNA gyrase B subunit [Geobacter lovleyi SZ] gi|189419345|gb|ACD93743.1| DNA gyrase, B subunit [Geobacter lovleyi SZ] Length = 802 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 238/577 (41%), Positives = 348/577 (60%), Gaps = 17/577 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 +AS+ Y A SI++LEGL VR RP MYIG T LHHL E++DN++DE +AG+ N Sbjct: 7 NGTAASNEYGAGSIKVLEGLSAVRKRPAMYIGSTASAGLHHLVYEIVDNSIDEALAGHCN 66 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V+++ +G +TVVDNGRGIP + HP +S E++LT LHAGGKFDN +Y++SGGLH Sbjct: 67 DVSVTINTDGSITVVDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNDSYKVSGGLH 125 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I+ Q + RG P SPLE +RGT+ITF PD +I Sbjct: 126 GVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQSPLEVTG-TTRRRGTKITFMPDEEI 184 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + L + + A+L+ V+ + ++ + +F++ GG+ ++++ Sbjct: 185 FET-TEYSFDVLSQRLRELAFLNAGVRIKINDER------ADGKSHDFFYEGGINSFVEY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + + K EK G +E ++ + + +I S+ N I T EGGTH +G Sbjct: 238 LNRAKTPLHQKPIYFKGEKGGV---EMEVSMQYNDTYDEKIFSFANNINTHEGGTHLAGF 294 Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 + ALTR + YA + I DDL ++SV I +P+F GQTKTKL + + Sbjct: 295 KAALTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQFEGQTKTKLGNSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ L + YL +NP A ++LE IE + R RK R+ RK A+ LPG Sbjct: 355 KGYVESLLNEKLAVYLEENPQVAKRILEKSIEAARAREAARKARDLTRRKGALDLGGLPG 414 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 415 KLADCQEKDPALCELYLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKMLSSQ 474 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L+ A+G + + LRY ++I+MTDADVDG+HI +LLLTFFY+ M +LIE+ Sbjct: 475 EIRTLITAMGTGIGKDDFDIAKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMQELIERG 534 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 HL++ PPL+++ +G K +Y +E Q L E Sbjct: 535 HLYIAQPPLYKVKRGKKELYLRNEAALQTFLLEEGAE 571 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++L F + K + I R+KGLGEM QL ET M+ R LL+V+I + + Sbjct: 718 EELLSYFLDYAKKGLAIQRYKGLGEMNPDQLWETTMNPENRILLQVKIEDVV----EADQ 773 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 774 IFTVLMGDQVEPRREFIELNALNVVNLD 801 >gi|315655462|ref|ZP_07908362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] gi|315490402|gb|EFU80027.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] Length = 703 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 233/697 (33%), Positives = 341/697 (48%), Gaps = 63/697 (9%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y A + +LEGLE VR RP MYIG TD + L H E+IDN++DE +AG+ + IEV L Sbjct: 8 SDYSAHHLSVLEGLEAVRKRPAMYIGSTDRRGLMHCLWEIIDNSVDEALAGFCDHIEVVL 67 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + V DNGRG+P++ P S +E++ T LHAGGKFD Y+++GGLHGVG SV Sbjct: 68 YPDHSAEVRDNGRGVPIDEVP-GTGLSGVEVVYTKLHAGGKFDAGLYKVAGGLHGVGASV 126 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKEKVRN 201 VNALS + V V R +F RG P S L K KV+ Sbjct: 127 VNALSARMDVAVDRGGVTHGLQFRRGEPGVFSDTEELNPNNAFQPFEHSSKLTKLGKVKK 186 Query: 202 -KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 GTR+ F D +IF + F L + ++L + + + G Sbjct: 187 GTTGTRVRFWADYQIFPKEVDFSYEDLSNRARKTSFLVPGLAITVTDLR-----GGETLT 241 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVE 303 + F GG ++ +R++ + G K+ V+ Sbjct: 242 DTFLHKGGTVDFVDYLAPDRAITDTWQLQGSGTFTEIVQVPNQQTGHLEPKEMERTCEVD 301 Query: 304 WAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISI 357 A+ W + SY N I T GGTH +G L + ++ + + + I Sbjct: 302 VALRWGVGYDTVEQSYVNIIETPVGGTHLAGFEAGLVKTLRAAIQANSRRLKLGAKESKI 361 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY----LVQNPI 413 +D++ +++V + EPEF GQTK L S + V + + ++ Sbjct: 362 EKEDILAGMTAVITVRLPEPEFEGQTKEALGSAKVKPIVTKVVAKELEAKLNSRKREDKN 421 Query: 414 EATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 + + LL+ ++ RL R +E RK A+ LP KL DC + +ELFIVEGD Sbjct: 422 QVSTLLDKIVAEMRSRLSARLSKEITRRKNALETSTLPTKLVDCRSDDVEKSELFIVEGD 481 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SA G+AK ARN QA+ P+RGKILNV G+ ++ N + ++Q LG + + Sbjct: 482 SALGTAKAARNSEFQALFPIRGKILNVQKTGTAQMLANAECAAIIQVLGAGSGRTFDISQ 541 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT--- 586 RY KVI+MTDADVDGAHI +LLLT F++ M +I +F PPL RI +G Sbjct: 542 ARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPMIAAGRVFAAVPPLHRIQVNAKGKTPG 601 Query: 587 KSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + Y + E+ K L + ++ G+ K I R+KGLGEM A QL ET MD RTL R+ + Sbjct: 602 EFRYTYSEDQLHKELGKLEQTGRTYKEPIQRYKGLGEMDADQLAETTMDPRHRTLRRIRL 661 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + ++ ++ LMG+ R +FI E AS +D Sbjct: 662 SDE-AAVNRAEEVFELLMGSAVPPRREFIIEGASKLD 697 >gi|51598224|ref|YP_072415.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108810130|ref|YP_654046.1| DNA gyrase subunit B [Yersinia pestis Antiqua] gi|108814112|ref|YP_649879.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|145597328|ref|YP_001161403.1| DNA gyrase subunit B [Yersinia pestis Pestoides F] gi|150260971|ref|ZP_01917699.1| DNA gyrase subunit B [Yersinia pestis CA88-4125] gi|153947743|ref|YP_001403092.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 31758] gi|162420836|ref|YP_001608445.1| DNA gyrase subunit B [Yersinia pestis Angola] gi|165926159|ref|ZP_02221991.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165936896|ref|ZP_02225462.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009503|ref|ZP_02230401.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213310|ref|ZP_02239345.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401541|ref|ZP_02307035.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422871|ref|ZP_02314624.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425446|ref|ZP_02317199.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022266|ref|YP_001718771.1| DNA gyrase subunit B [Yersinia pseudotuberculosis YPIII] gi|186893348|ref|YP_001870460.1| DNA gyrase subunit B [Yersinia pseudotuberculosis PB1/+] gi|218931071|ref|YP_002348946.1| DNA gyrase subunit B [Yersinia pestis CO92] gi|229839801|ref|ZP_04459960.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841886|ref|ZP_04462042.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229896763|ref|ZP_04511926.1| DNA gyrase subunit B [Yersinia pestis Pestoides A] gi|229904651|ref|ZP_04519762.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|270488362|ref|ZP_06205436.1| DNA gyrase, B subunit [Yersinia pestis KIM D27] gi|294505622|ref|YP_003569684.1| DNA gyrase subunit B [Yersinia pestis Z176003] gi|51591506|emb|CAH23178.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108777760|gb|ABG20279.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|108782043|gb|ABG16101.1| DNA gyrase subunit B [Yersinia pestis Antiqua] gi|115349682|emb|CAL22663.1| DNA gyrase subunit B [Yersinia pestis CO92] gi|145209024|gb|ABP38431.1| DNA gyrase subunit B [Yersinia pestis Pestoides F] gi|149290379|gb|EDM40456.1| DNA gyrase subunit B [Yersinia pestis CA88-4125] gi|152959238|gb|ABS46699.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis IP 31758] gi|162353651|gb|ABX87599.1| DNA gyrase, B subunit [Yersinia pestis Angola] gi|165915138|gb|EDR33749.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922019|gb|EDR39196.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991425|gb|EDR43726.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205608|gb|EDR50088.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958263|gb|EDR55284.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048923|gb|EDR60331.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055460|gb|EDR65253.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748800|gb|ACA66318.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis YPIII] gi|186696374|gb|ACC87003.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis PB1/+] gi|229678769|gb|EEO74874.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|229691225|gb|EEO83278.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229696167|gb|EEO86214.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700201|gb|EEO88237.1| DNA gyrase subunit B [Yersinia pestis Pestoides A] gi|262363786|gb|ACY60507.1| DNA gyrase subunit B [Yersinia pestis D106004] gi|262367723|gb|ACY64280.1| DNA gyrase subunit B [Yersinia pestis D182038] gi|270336866|gb|EFA47643.1| DNA gyrase, B subunit [Yersinia pestis KIM D27] gi|294356081|gb|ADE66422.1| DNA gyrase subunit B [Yersinia pestis Z176003] gi|320017424|gb|ADW00996.1| DNA gyrase subunit B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 804 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|326561292|gb|EGE11651.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 46P47B1] gi|326567837|gb|EGE17941.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 12P80B1] gi|326573752|gb|EGE23710.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis O35E] Length = 629 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y++ + +LEGLEPVR RPGMY TD +HL EVIDN++DE +AG+A I V L Sbjct: 2 STYNSQKLEVLEGLEPVRRRPGMY---TDTMRPNHLAQEVIDNSVDEALAGFARHIIVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF Y++SGGLHGVGISV Sbjct: 59 HKDGSLSVEDDGRGMPTDIHPEF-NQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + + F G P++ L + + KRGT++ F D + F Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTP- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ + + + E + E + F G+ YL +L+ Sbjct: 177 KFSIKTLKHNLKAKAVLAAGLHIDFISEIEPND------SESWQFTDGVVQYLTEQLDGS 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 + E F E RG +A++W E SY N I T +GGTH +GLR + Sbjct: 231 DTLPKEPFYVSQEPTLGERGGATFALSWLAEGGTPITESYVNLIPTAQGGTHVNGLRTGV 290 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ ++ R I + +D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 291 LEALREFCDIHNLLPRQIKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQ 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+P A + E I ++ +RL ++V RK + LPGKL DC Sbjct: 351 TLAKDAFSLWLNQHPDHAKAIAELAISKATKRLA--TAQKVARKKVTQGPALPGKLWDCR 408 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + G+ELF+VEG SAGGSAKQAR+ + QA+LPLRGKILN S+ + ++Q+I D+ Sbjct: 409 GGLKEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIA 468 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+K+ I+ DAD DG HIA+L+ F + LIE HL++ P Sbjct: 469 IAIGVDPASDDL-SELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA D E +++L G K +I+RFKGLGEM SQLKET M+ + Sbjct: 528 PLYRIDAGKDVYYALDNEELEQVLARL---GNKKTQITRFKGLGEMNPSQLKETTMNPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+R+ DL+ T ++ L+ K + +R ++++ + D Sbjct: 585 RKLIRL----DLDDTASTNSIMDMLLAKKRSADRKQWLETKGDLAD 626 >gi|238759587|ref|ZP_04620749.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236] gi|238702246|gb|EEP94801.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236] Length = 804 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL+ + GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-ELTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++ E + F++ GG++ +++ +N Sbjct: 180 IEFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE-------DHFHYEGGIRAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEDALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|184159873|ref|YP_001848212.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ACICU] gi|183211467|gb|ACC58865.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii ACICU] Length = 628 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 257/646 (39%), Positives = 373/646 (57%), Gaps = 29/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN-QQIMDL 516 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ + Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASSQEVHDI 465 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ Sbjct: 466 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 524 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PPLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPN 582 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L +A +R ++++++ + D Sbjct: 583 TRRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKQWLEQKGNLAD 625 >gi|168699793|ref|ZP_02732070.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246] Length = 650 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 254/656 (38%), Positives = 363/656 (55%), Gaps = 26/656 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y I++LEGLEPVR RP MYIGG D K LHHL E++DNA+DE I GYA+ I V+ Sbjct: 9 TAAYRTEDIQVLEGLEPVRKRPAMYIGGVDAKGLHHLAWEILDNAVDEYINGYADHITVT 68 Query: 101 LDGNG-FLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGV 157 L +G +T+ DNGRGIPV+ HPK K+ LE++LT LHAGGKF S Y SGGLHGV Sbjct: 69 LHKSGQAITIFDNGRGIPVDMHPKH-KKTGLELVLTVLHAGGKFGESESGYIHSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G SVVNALS L TV R + Q++++G PL+ +EK R GT I F PD IF Sbjct: 128 GASVVNALSKRLVATVRRDGFEYRQEYAKGTPLAKIEKVGPFRGH-GTGIYFEPDDTIFK 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L + +++ ++ + + E E PGGL +L + Sbjct: 187 TVR-FDPDTLRARLEDTSFVHSGLRITFKNE-------VTGETLELANPGGLPAFLGRLV 238 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 + + ++ + V SY N I T +GGTHE+GL+ A Sbjct: 239 LDGQKPPVTEASFSAVRETGDKIEVALQWTE-STEETYRSYANGIRTPQGGTHENGLKSA 297 Query: 338 LTRGIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 L + ++ Y + + + + I +DD+ V +LSVF+R+P F QTK +L + + + Sbjct: 298 LRKAVQSYIDTHDDVKKQSKGLKITADDIREGIVAVLSVFLRDPMFQSQTKDRLTNTEME 357 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV--NRKTAIRKLRLPG 451 +V+N +R + +L N A ++ ++ + R R +E + ++L LPG Sbjct: 358 GSVDNFVRPALEAWLNNNKTAADSIVGRIVIAARMREASRAAKEEVKRKAPGSKRLSLPG 417 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC TELFIVEGDSAGGSAKQ RN S QAVLPLRGKILN + K NQ Sbjct: 418 KLADCKSTDRDETELFIVEGDSAGGSAKQGRNNSTQAVLPLRGKILNCEGLPASKALTNQ 477 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I DLV A+G ++ LRY K+I++ DAD DG HI +L+L F ++ M DLI H Sbjct: 478 EIADLVTAIGTGIGDKFNYGGLRYGKIILLMDADADGCHITTLMLAFLFRHMPDLIRHGH 537 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +++ PPL+R+ G + D++ K++++E+ K + K E++RFKGLGEM A L T Sbjct: 538 VYIGRPPLYRVNVGKDIHWVQDDQGKEELVEKLTKANR-KFEVTRFKGLGEMDAKDLAAT 596 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 +D RTLL+V + + +T + L+G A R+ FI +A +D+ Sbjct: 597 TLDRRTRTLLKVSTDG---AALETDRTFADLLGKDAKPRYDFIMAKADQAVDEDLD 649 >gi|258622961|ref|ZP_05717976.1| DNA gyrase, subunit B [Vibrio mimicus VM573] gi|258626085|ref|ZP_05720936.1| DNA gyrase, subunit B [Vibrio mimicus VM603] gi|258581611|gb|EEW06509.1| DNA gyrase, subunit B [Vibrio mimicus VM603] gi|258584744|gb|EEW09478.1| DNA gyrase, subunit B [Vibrio mimicus VM573] Length = 805 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + LE K + + I R+KGLGEM QL ET MD + R ++ Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|22127978|ref|NP_671401.1| DNA gyrase subunit B [Yersinia pestis KIM 10] gi|45443725|ref|NP_995264.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|21961123|gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM 10] gi|45438595|gb|AAS64141.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001] Length = 805 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 3 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + + GT + F P + F + Sbjct: 122 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-EQTGTTVRFWPSFQTFTNN 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 181 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE-------DHFHYEGGIKAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 234 KNPIHPKVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 564 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALRAANID 804 >gi|262172781|ref|ZP_06040459.1| DNA gyrase subunit B [Vibrio mimicus MB-451] gi|261893857|gb|EEY39843.1| DNA gyrase subunit B [Vibrio mimicus MB-451] Length = 805 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + LE K + + I R+KGLGEM QL ET MD + R ++ Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|238765067|ref|ZP_04626002.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638] gi|238696684|gb|EEP89466.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638] Length = 804 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG++ +++ +N Sbjct: 180 TEFQYEILAKRLRELSFLNSGVSIKLKDKRNDRE-------DHFHYEGGIRAFVEYLSKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMGKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDG 563 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANID 803 >gi|269125855|ref|YP_003299225.1| DNA topoisomerase [Thermomonospora curvata DSM 43183] gi|268310813|gb|ACY97187.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM 43183] Length = 696 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 232/685 (33%), Positives = 329/685 (48%), Gaps = 57/685 (8%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A + +LEGLE VR RPGMYIG TD + L H E++DN++DE +AG+ I V L Sbjct: 17 YSARHLSVLEGLEAVRKRPGMYIGSTDSRGLTHCLWEIVDNSVDEALAGHCTKISVVLHA 76 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNGRGIPV+ P+ +E+++T LHAGGKF +Y SGGLHGVG SVVN Sbjct: 77 DGSYEVCDNGRGIPVDIEPR-TGLPGVELVMTRLHAGGKFGGVSYTASGGLHGVGASVVN 135 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSP---------------LEKKEKVRNKRGTRIT 208 ALS L V V R + F RG+P + E GTR+ Sbjct: 136 ALSARLDVEVDRDGHTHAMSFKRGLPGEFAAPGPERRFKKKSGLRKIAEVPPGVTGTRVR 195 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PD +IF A D ++ + A+L ++ ++ P E F F GG Sbjct: 196 FWPDLQIFLKDARIDTETVMDRMRQTAFLVPGLEISVRDER-----GEEPVAETFKFDGG 250 Query: 269 LKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEEN 312 + + ++ + + F G+ V+ A+ W Sbjct: 251 ISEFCDYLAKDEPICDTLRFRGRGHFTETVPVLDEQGHLTPTDVERDLEVDVALRWGTGY 310 Query: 313 PE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGI 369 S+ N I T + GTH +G AL R I + T+ + DD++ + Sbjct: 311 DTVCKSFVNVIATPKHGTHVTGFDRALVRTINEQLRATKLLKNGDEPVTKDDILEGLTAV 370 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER---- 425 ++V + EP+F GQTK L + A R V + + A + + V+E+ Sbjct: 371 VTVRLPEPQFEGQTKEVLGTSAATRIVARVVSEGLKEAFDNPKRGARQQMRAVLEKIVAA 430 Query: 426 -SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 R + RK A+ LP KL DC +ELFIVEGDSA G+AK ARN Sbjct: 431 AKARIAARTHRDNQRRKNALENSALPAKLVDCRTTDD-RSELFIVEGDSALGTAKLARNS 489 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LP+RGKILNV A + N + ++Q +G + + E RY +VI+M DA Sbjct: 490 EFQALLPIRGKILNVQKASMADMLKNAECAAIIQVVGAGSGRTFDLEAARYGRVILMADA 549 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQGT-KSVYAHDEEHKQ 598 DVDGAHI LLLT FY+ M ++E +F PPL RI +G K VY + + + Sbjct: 550 DVDGAHIRCLLLTLFYRYMRPMLEAGRVFAAVPPLHRIQLTNPKKGQDKYVYCYTDAELR 609 Query: 599 KILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + L EF++ G + K I R+KGLGEM A QL ET MD +R L+ ++ Sbjct: 610 RKLVEFERRGIRWKEPIQRYKGLGEMDADQLAETTMDPRRRM----LRRIRLHDAEEAAR 665 Query: 658 SINKLMGTKADERFKFIQERASFID 682 + LMG++ R +FI A+ +D Sbjct: 666 IFDLLMGSEVAPRREFITAGAAELD 690 >gi|317494670|ref|ZP_07953082.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917272|gb|EFV38619.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA] Length = 804 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 343/574 (59%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q ++ G+P PL+ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDT-ETTGTTVRFWPSMETFSNH 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++ E + F++ GG+K +++ +N Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLRDKRDNRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMEKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL +NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETQMNELLAEYLQENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPAHSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQLSIALDG 563 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPQSRRMLRVTVKDAV----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALRAANLD 803 >gi|262166787|ref|ZP_06034524.1| DNA gyrase subunit B [Vibrio mimicus VM223] gi|262026503|gb|EEY45171.1| DNA gyrase subunit B [Vibrio mimicus VM223] Length = 805 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I SQ + G+P +PL + + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIHRGGKIHSQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + LE K + + I R+KGLGEM QL ET MD + R ++ Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|188535559|ref|YP_001909356.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99] gi|188030601|emb|CAO98496.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99] Length = 802 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 222/566 (39%), Positives = 348/566 (61%), Gaps = 18/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q + G+P + L + + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + + +++ GG+K +++ +N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIKLEDKRD-------GKTDHYHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPNAFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL+++P +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQY 555 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIEWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAV----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALRAANID 801 >gi|253987487|ref|YP_003038843.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778937|emb|CAQ82097.1| DNA gyrase subunit B [Photorhabdus asymbiotica] Length = 805 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 230/579 (39%), Positives = 346/579 (59%), Gaps = 18/579 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ N + V Sbjct: 3 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCNEVIV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P SPL+ + + GTR+ F P F + Sbjct: 122 SVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGET-EQTGTRVRFWPSMDTFRNN 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 181 TEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE-------DHFHYEGGIKAFVEFLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE ++ W + I + N I +GGTH G R A+ Sbjct: 234 KTPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 290 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD V ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSYMDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ETLMNEKLVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDEYQLSIALDGASLYT 569 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ LE K + + I R+KGLGEM QL ET M+ R ++RV + + T Sbjct: 719 DFEQALEWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----AT 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 DQLFTTLMGDAVEPRRAFIEENALKAANID 804 >gi|253686413|ref|YP_003015603.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251752991|gb|ACT11067.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 805 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 221/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+P +PL + N+ GT + F P + F + Sbjct: 121 SVVNALSEKLKLVIHRDGKLHEQTYKHGVPQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + +++ GG+K ++ N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD N R +LRV + + Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPNSRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804 >gi|326559446|gb|EGE09869.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 7169] gi|326565180|gb|EGE15371.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 103P14B1] gi|326568161|gb|EGE18243.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC8] gi|326572201|gb|EGE22197.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC7] gi|326572804|gb|EGE22789.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis CO72] gi|326574623|gb|EGE24559.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 101P30B1] Length = 629 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 250/646 (38%), Positives = 366/646 (56%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y++ + +LEGLEPVR RPGMY TD +HL EVIDN++DE +AG+A I V L Sbjct: 2 STYNSQKLEVLEGLEPVRRRPGMY---TDTMRPNHLAQEVIDNSVDEALAGFARHIIVIL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF Y++SGGLHGVGISV Sbjct: 59 HKDGSLSVEDDGRGMPTDIHPEF-NQSGVELILTRLHAGGKFSTENYQVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + + F G P++ L + + KRGT++ F D + F Sbjct: 118 VNALSTRVEVTVWRDGLMHTMAFEHGEPVTALIADKSANKKKRGTKVQFWVDGQYFDTP- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ + + + E + E + F G+ YL +L+ Sbjct: 177 KFSIKTLKHNLKAKAVLAAGLHIDFISEIEPND------SESWQFTDGVVQYLTEQLDGS 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 + E F E RG +A++W E SY N I T +GGTH +GLR + Sbjct: 231 DTLPKEPFYVSQEPTLGERGGATFALSWLAEGGTPITESYVNLIPTAQGGTHVNGLRTGV 290 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ ++ R I + +D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 291 LEALREFCDIHNLLPRQIKLSGEDVWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQ 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+P A + E I ++ +RL ++V RK + LPGKL DC Sbjct: 351 TLAKDAFSLWLNQHPDHAKAIAELAISKATKRLA--TAQKVARKKVTQGPALPGKLWDCR 408 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + G+ELF+VEG SAGGSAKQAR+ + QA+LPLRGKILN S+ + ++Q+I D+ Sbjct: 409 GGLKEGSELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEVSSDTVLSSQEIHDIA 468 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+K+ I+ DAD DG HIA+L+ F + LIE HL++ P Sbjct: 469 IAIGVDPASDDL-SELRYDKICILADADSDGLHIATLICALFVKHFPALIEAGHLYVAVP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI G YA D E +++L G K +I+RFKGLGEM SQLKET M+ + Sbjct: 528 PLYRIDAGKDVYYALDNEELEQVLARL---GNKKTQITRFKGLGEMNPSQLKETTMNPDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+R+ DL+ T ++ L+ K + +R ++++ + D Sbjct: 585 RKLIRL----DLDDTASTNSIMDMLLAKKRSADRKRWLETKGDLAD 626 >gi|300719138|ref|YP_003743941.1| DNA gyrase subunit B [Erwinia billingiae Eb661] gi|299064974|emb|CAX62094.1| DNA gyrase subunit B [Erwinia billingiae Eb661] Length = 802 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 224/574 (39%), Positives = 349/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + +Q + G+P +PL + + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ ++ +++ GG+K +++ +N Sbjct: 180 TDFEYEILAKRLRELSFLNSGVSIKLEDKRDA-------RQDHYHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPNVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALCEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDQYQIAIALDG 563 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E ++ ++ K + + + R+KGLGEM QL ET MD + R +LRV + + Sbjct: 715 ESFEQAMDWLVKESRRGLTVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAI----A 770 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 771 ADQLFTTLMGDAVEPRRAFIEENALRAANID 801 >gi|313772173|gb|EFS38139.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1] gi|313810038|gb|EFS47759.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1] gi|313830365|gb|EFS68079.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1] gi|313833738|gb|EFS71452.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1] gi|314973369|gb|EFT17465.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1] gi|314976048|gb|EFT20143.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1] gi|314983931|gb|EFT28023.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1] gi|315095914|gb|EFT67890.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1] gi|327326196|gb|EGE67986.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2] gi|327445914|gb|EGE92568.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes HL043PA2] gi|327448106|gb|EGE94760.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1] gi|328760843|gb|EGF74409.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1] Length = 719 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 337/720 (46%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEP-HTGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|261213260|ref|ZP_05927542.1| DNA gyrase subunit B [Vibrio sp. RC341] gi|262402079|ref|ZP_06078643.1| DNA gyrase subunit B [Vibrio sp. RC586] gi|260837534|gb|EEX64237.1| DNA gyrase subunit B [Vibrio sp. RC341] gi|262351725|gb|EEZ00857.1| DNA gyrase subunit B [Vibrio sp. RC586] Length = 805 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I SQ + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V S ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + LE K + + I R+KGLGEM QL ET MD + R ++ Sbjct: 708 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAVG----ADELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|315502965|ref|YP_004081852.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5] gi|315409584|gb|ADU07701.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5] Length = 704 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 225/681 (33%), Positives = 337/681 (49%), Gaps = 52/681 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A + LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A ++V L Sbjct: 28 YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATKVDVILHA 87 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIP + H K S +E++LT LHAGGKF S Y+ SGGLHGVG S VN Sbjct: 88 DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NKRGTRI 207 ALS VTV R + + F G+P + GT I Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 + DP+ F A D + ++ A+L V E P +E F+FP Sbjct: 207 RWWHDPRYFETGATLDTETVRLKLRNTAFLVPGVAYRLRD-----ETGEEPGEESFHFPD 261 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312 GL ++ S E R VE A W Sbjct: 262 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGY 321 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368 + NTI GGTH G AL R + A + + + DD++ Sbjct: 322 ERTVECFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTA 381 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426 ++ V I EP+F QTK +L + + ++ + +L + EA +L+ +++ + Sbjct: 382 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAA 441 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 RL +++Q++ RKTA+ +P KL DC +ELFIVEGDSA G+++ AR+ Sbjct: 442 RVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSE 501 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LP+RGKILNV A +++ +N + +VQ LG + + LRY +V+IM DAD Sbjct: 502 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSALRYGRVLIMADAD 561 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602 VDGAHI +LL+T F + M LIE L+ PPL +IT + ++VY + + + + Sbjct: 562 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVR 621 Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + +K GK + I RFKGLGEM A +L ET M+ R + R+ ++ ++ + + Sbjct: 622 KLEKAGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VEAAERILEL 677 Query: 662 LMGTKADERFKFIQERASFID 682 LMG K + R ++ + A +D Sbjct: 678 LMGEKVEPRRNWLIDSADRVD 698 >gi|320539857|ref|ZP_08039516.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson] gi|320030043|gb|EFW12063.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson] Length = 804 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 351/574 (61%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I+V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 AIHADNSVSVQDDGRGIPTGLHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFWPSYQTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLKDKRTDRE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMEKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ + LPGKLAD Sbjct: 350 ETLMNEKLVDYLMENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLVGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + L G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYLISIAMDG 563 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++LE K + + + R+KGLGEM QL ET MD R +LRV I + Sbjct: 719 FEQVLEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPESRRMLRVTIKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRVFIEENALKAANID 803 >gi|325577000|ref|ZP_08147571.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus parainfluenzae ATCC 33392] gi|325160958|gb|EGC73077.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus parainfluenzae ATCC 33392] Length = 808 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 233/569 (40%), Positives = 346/569 (60%), Gaps = 19/569 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD+L +T+ RQ + Q + G P PL + + GT + F P P Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQGPLTVIGETQ-TTGTTVRFWPSP 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF FD L K + ++L+ V ++ E + F++ GG++ ++ Sbjct: 180 EIFA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE-------DHFHYEGGIQAFV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332 + +N++ I + F EK G VE A+ W + N + + N I +GGTH + Sbjct: 232 EYLNKNKNPIHPKPFYFSAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + Y E K +S DD V I+SV + +P+F+ QTK KLVS Sbjct: 289 GFRGALTRSLNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSS 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449 + + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ L Sbjct: 349 EVKSAVESAMNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ + Sbjct: 409 PGKLADCQEKDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLS 468 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE Sbjct: 469 SQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 528 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHK 597 + ++++ PPL+++ +G + Y D + Sbjct: 529 RGYVYIAQPPLYKVKKGKQERYIKDNDEM 557 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +T+G K+ ++ +E K + +EI R+KGLGEM A QL ET MD N R +L Sbjct: 712 VTRGEKTQPVQS---FEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRML 768 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 769 KVSIKDAV----AADQLFTTLMGDEVEPRREFIEMNALRA-NLD 807 >gi|301169283|emb|CBW28880.1| DNA gyrase, subunit B [Haemophilus influenzae 10810] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|261856340|ref|YP_003263623.1| DNA topoisomerase IV subunit beta [Halothiobacillus neapolitanus c2] gi|261836809|gb|ACX96576.1| DNA topoisomerase IV, B subunit [Halothiobacillus neapolitanus c2] Length = 638 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 247/654 (37%), Positives = 370/654 (56%), Gaps = 26/654 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A+ + + YDA +I +L GLEPVR RPGMY TD +HL EVIDN++DE ++G+A Sbjct: 1 MADSTNTQQYDARAIEVLTGLEPVRKRPGMY---TDTTRPNHLAQEVIDNSVDEAVSGFA 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V L +G L+V D+GRG+PV+ HP+ + +E+ILT LHAGGKF + TY SGGL Sbjct: 58 SRIDVVLHADGSLSVTDDGRGMPVDIHPEH-GVTGVELILTRLHAGGKFSDKTYRFSGGL 116 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDP 213 HGVG+SVVNALS++L V + R I+ F+ G P+ L + V + + GTR+ F P Sbjct: 117 HGVGVSVVNALSEKLTVEIRRDGKIWQMAFADGAPVGELAEAGTVPKKQTGTRLHFWPRA 176 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F F +RLL + ++KA L + + + ++ ++F GL YL Sbjct: 177 SYFDQP-KFLVSRLLHVLRAKAVLCPGLTVTFIDESSDEP------QKIWHFENGLCDYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKK-GTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTH 330 LE R++I ++ F G + V+WA+ W EE E SY N I T +GGTH Sbjct: 230 LGALEGRAIIPAQGFVGHMSAELAERPQMVDWALVWLEEGGEPLTESYVNLIPTPQGGTH 289 Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +GLR LT ++++ + R + + +D+ +LS + EP+FAGQ K +L S Sbjct: 290 VNGLRQGLTEAVREFCDFRNLVPRGVKLTPEDVFDRVAFVLSAKLSEPQFAGQMKERLSS 349 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 ++ + ++D +L Q+P + + I+ ++ RL+ ++V RK L Sbjct: 350 RESASFIGGVIKDSLSLWLNQHPEQGEIIARIAIDAAQTRLKND--KKVARKRVTAGPAL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC+ + TELF+VEGDSAGGSAKQAR R QA++PLRGKILN G +++ Sbjct: 408 PGKLADCTASDISRTELFLVEGDSAGGSAKQARERDFQAIMPLRGKILNTWETGVDQVLA 467 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +Q++ D+ A+G S LRY KV I+ DAD DG HIA+LL F + L+ Sbjct: 468 SQEVHDIAVAIGLEPGSDDL-SKLRYGKVCILADADSDGLHIATLLCALFLRHFTALVRA 526 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQL 628 H+F+ PPL+RI G ++ YA DE + IL F +GK +++RFKGLGEM SQL Sbjct: 527 GHVFVAMPPLYRIDLGKETFYALDEAERDGILGRFAAEHRRGKPQVTRFKGLGEMNPSQL 586 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFI 681 +E+ + R L+++ I D ++ L+ K A +R +++ + Sbjct: 587 RESTLAPQTRRLVQLSITDDDPYA-----LMDMLLAKKRAADRRGWLEAKGDLA 635 >gi|227502246|ref|ZP_03932295.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725] gi|227077070|gb|EEI15033.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725] Length = 663 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/674 (34%), Positives = 359/674 (53%), Gaps = 64/674 (9%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL E++DN++DE +AG+A+ + V L +G + V+DNGRGIPVE H Sbjct: 1 MYIGSTGSRGLHHLIWEIVDNSVDEAMAGFADKVTVKLLEDGGVEVIDNGRGIPVEMH-- 58 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 T+++++T LHAGGKFD+ +Y +SGGLHGVGISVVNALS + + R+ + Q Sbjct: 59 ASGAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVNALSTRVEAEIKREGKHWYQN 118 Query: 184 FSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKT 243 F IP +E GT+I F DP+IF FD + + Q A+L+ + Sbjct: 119 FQNAIPDDLVE--GGNARGTGTKIRFWADPEIFETT-EFDYDTIARRLQEMAFLNKGLTI 175 Query: 244 CWSCDKEIAEKYGIP--------------------------------------------E 259 ++ E+ + + Sbjct: 176 ELIDERVTQEQIELEEIADAESGEASADETSFDDVPDAGDTFNEEADSKNVTKADKKRRK 235 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 K F++P GL Y++ +++S I I + + + + VE A+ W + + ++ Sbjct: 236 KITFHYPEGLTDYVKFLNKSKSAIHPTIVSFEAKGEDH---EVEVALQWNQGYKQSVHTF 292 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 NTI T EGGTHE G R ALT + +YA+ + + ++ DD ++SV + + Sbjct: 293 ANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKDKDGNLSGDDCREGLAAVISVKVGD 352 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F GQTKTKL + + + V+ ++ + + + NP EA ++ + + R+ RK R Sbjct: 353 PQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDANPAEAKAIINKAVSSAHARMAARKAR 412 Query: 437 EV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ RK+A LPGKLADC +EL+IVEGDSAGGSAK R+ QA+LPLRGK Sbjct: 413 EMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVEGDSAGGSAKAGRDSMFQAILPLRGK 472 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A +K+ N ++ ++ ALG ++ + LRY+K+++M DADVDG HIA+LL Sbjct: 473 ILNVEKARMDKVLKNAEVQAIITALGTGIHEEFDIKKLRYDKIVLMADADVDGQHIATLL 532 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHDEEHKQKILEEFKKHGKGKIE- 613 LT ++ M L+E H++L +PPL+++ + YA ++ + K+L E + + + Sbjct: 533 LTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTPGYAFSDDERDKLLAEGLEQNRKINKD 592 Query: 614 --ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 I R+KGLGEM AS+L ET +D + R L RV DL + + + LMG R Sbjct: 593 DGIQRYKGLGEMNASELWETTLDPSTRLLRRV----DLEDAQRADELFSILMGDDVAARR 648 Query: 672 KFIQERASFIDDVG 685 FI RA + + Sbjct: 649 SFITRRAKDVRFLD 662 >gi|71902107|ref|ZP_00684141.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa Ann-1] gi|71728125|gb|EAO30322.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa Ann-1] Length = 629 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 242/646 (37%), Positives = 365/646 (56%), Gaps = 26/646 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AGYAN IEV+L Sbjct: 5 YNAADIEVLTGLDPVKRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYANRIEVTLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G V DNGRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+SVVN Sbjct: 62 DGSCEVADNGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNRNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS ++ + + R+ + +F G +S L+ V + GTR+ F PD K F F Sbjct: 121 ALSSKVDLFIKREGSEHHMEFREGFAVSKLKVLGTVSKKNTGTRLRFWPDSKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + L + ++KA L + + E ++F GL+ YL+ ++ L Sbjct: 180 NVRVLRHLLRAKAVLCPGLTVELLEE-------ATGEINTWHFKDGLRDYLKGEMTESEL 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +E+F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPAELFIGCLKKDTE---VVDWAVAWVPEGELTQESYVNLIPTPQHGTHVNGLRSGLTDA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R I + +D+ +LS+ + +P+F+GQTK +L S A +E+ + Sbjct: 290 LREFCDFRNLLPRGIKLAPEDVWDRVTFVLSLKMSDPQFSGQTKERLSSRQAAGFIESTV 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L QN + + IER+ RL+ +++V RK LPGKLADC Sbjct: 350 HDAFSLWLNQNVDIGEHIAQIAIERASARLK--TEKQVTRKKITHGPALPGKLADCISLD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + + ++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASDEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY K++I+ DAD DG HIA+LL F + L+ H+F+ PPLF Sbjct: 468 GCDPGKDNL-SGLRYGKIVILADADSDGLHIATLLTALFLKHFPGLVAAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G + YA D+E K +LE+ ++ KG+I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RVDVGKQVFYAVDDEEKTILLEKIQREKIKGQISVTRFKGLGEMNPQQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+++ ++ + + L +A++R ++++ + + + Sbjct: 587 LVQLTMDDNTQTCSLMDML---LAKKRANDRKQWLETKGNLAS-LD 628 >gi|148827759|ref|YP_001292512.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] gi|148719001|gb|ABR00129.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|313818570|gb|EFS56284.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2] gi|314959992|gb|EFT04094.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2] gi|315085646|gb|EFT57622.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3] Length = 719 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 338/720 (46%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P+ S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGDFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|313764445|gb|EFS35809.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1] gi|313792132|gb|EFS40233.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1] gi|313801916|gb|EFS43150.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2] gi|313807528|gb|EFS46015.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2] gi|313815984|gb|EFS53698.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1] gi|313820337|gb|EFS58051.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1] gi|313822857|gb|EFS60571.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2] gi|313825212|gb|EFS62926.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1] gi|313827500|gb|EFS65214.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2] gi|313838742|gb|EFS76456.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1] gi|314915439|gb|EFS79270.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4] gi|314918280|gb|EFS82111.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1] gi|314920092|gb|EFS83923.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3] gi|314925225|gb|EFS89056.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3] gi|314931614|gb|EFS95445.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1] gi|314955667|gb|EFT00069.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1] gi|314958181|gb|EFT02284.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1] gi|314962791|gb|EFT06891.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1] gi|314967842|gb|EFT11941.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1] gi|314978414|gb|EFT22508.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2] gi|314988116|gb|EFT32207.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2] gi|314989921|gb|EFT34012.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3] gi|315078006|gb|EFT50057.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2] gi|315080631|gb|EFT52607.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1] gi|315084303|gb|EFT56279.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2] gi|315088932|gb|EFT60908.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1] gi|315098545|gb|EFT70521.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2] gi|315101098|gb|EFT73074.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1] gi|315105643|gb|EFT77619.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1] gi|315108318|gb|EFT80294.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2] gi|327330265|gb|EGE72014.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1] gi|327331929|gb|EGE73666.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3] gi|327443131|gb|EGE89785.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2] gi|327450773|gb|EGE97427.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes HL087PA3] gi|327453150|gb|EGE99804.1| DNA gyrase, B subunit, carboxyl terminus [Propionibacterium acnes HL092PA1] gi|327453883|gb|EGF00538.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2] gi|328753461|gb|EGF67077.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1] gi|328754191|gb|EGF67807.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1] gi|328754557|gb|EGF68173.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2] Length = 719 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 338/720 (46%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P+ S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|319775512|ref|YP_004138000.1| DNA gyrase subunit B [Haemophilus influenzae F3047] gi|319897917|ref|YP_004136114.1| DNA gyrase, subunit b [Haemophilus influenzae F3031] gi|329122446|ref|ZP_08251033.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus aegyptius ATCC 11116] gi|317433423|emb|CBY81804.1| DNA gyrase, subunit B [Haemophilus influenzae F3031] gi|317450103|emb|CBY86317.1| DNA gyrase, subunit B [Haemophilus influenzae F3047] gi|327473728|gb|EGF19147.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus aegyptius ATCC 11116] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++++E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|319786497|ref|YP_004145972.1| DNA topoisomerase IV subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317465009|gb|ADV26741.1| DNA topoisomerase IV, B subunit [Pseudoxanthomonas suwonensis 11-1] Length = 629 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 245/645 (37%), Positives = 363/645 (56%), Gaps = 25/645 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDNA+DE +AG+A +EV+ Sbjct: 2 SSRYNAADIEVLSGLDPVKRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHARTVEVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G V D+GRG+PV+ HP+ +E+ILT LHAGGKF N Y SGGLHGVG+S Sbjct: 59 LYRDGSCEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNKNYTFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS + V + R F G +PLE V + GTR+ F PDPK F Sbjct: 118 VVNALSTLVEVHIKRDGAEHRIAFRDGNRATPLEVVGTVGKKNTGTRVRFWPDPKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + L + ++KA L + + E++ +++ GL+ YL+ +L Sbjct: 178 -KINVRALRHLLRAKAVLCPGLTVNLFDE-------ASGERDSWHYEDGLRDYLRNELAG 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVAL 338 R L+ +++F+G +K+ V+WA+AW E SY N I T + GTH +GLR L Sbjct: 230 RELLPADLFSGALKKETE---VVDWAVAWIPEGELVQESYVNLIPTAQHGTHVNGLRTGL 286 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A +E Sbjct: 287 TDALREFCDFRNLLPRGVKLAPEDVWDRVAFVLSLKMTDPQFSGQTKERLSSRQAAGFIE 346 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 A D F +L QN K+ + I+R+ RL+ +++V RK + LPGKLADC Sbjct: 347 GAAHDAFSLWLNQNVEMGEKIAQIAIDRASARLK--TEKQVTRKKVTQGPALPGKLADCI 404 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + +Q++ DL Sbjct: 405 SQDLSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVASGSVLASQEVHDLA 464 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+GC LRY KV+I+ DAD DG HIA+LL F + L+ H+F+ P Sbjct: 465 VAIGCDPGKDDL-TGLRYGKVVILADADSDGLHIATLLSALFLRHFPALVAAGHVFVAMP 523 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDAN 636 PLFR+ G + YA DEE K+ +LE+ + KG++ ++RFKGLGEM QL+E+ + + Sbjct: 524 PLFRVDVGKQVFYALDEEEKRLLLEKIAREKIKGQVSVTRFKGLGEMNPQQLRESTIHPD 583 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 R L+++ ++ + L +A +R +++ + Sbjct: 584 TRRLVQLTVDDGDQTHSLMDML---LAKKRASDRKAWLETKGDLA 625 >gi|302820792|ref|XP_002992062.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii] gi|300140184|gb|EFJ06911.1| hypothetical protein SELMODRAFT_162108 [Selaginella moellendorffii] Length = 618 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 231/633 (36%), Positives = 354/633 (55%), Gaps = 27/633 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MYIG T + LHHL EV+DNA+DEV AG+A ++V L +G +++ DNGRGIP + HP Sbjct: 1 MYIGSTGPRGLHHLIYEVLDNAIDEVQAGFATQVDVVLHSDGSVSITDNGRGIPTDVHP- 59 Query: 124 FPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 KSTLE +LT LHAGGKF Y +SGGLHGVG+SVVNALS L TV R + Sbjct: 60 ATGKSTLETVLTVLHAGGKFGGDESGYTVSGGLHGVGVSVVNALSKRLEATVWRNGQEYR 119 Query: 182 QKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLS 238 Q F RG + L + + ++ GT + F PD ++F FD + + A+L+ Sbjct: 120 QVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVFTTTTAFDPNIVSSRLREVAFLN 179 Query: 239 GRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH 298 V + + E F+F GGL Y++ ++++ I I + + Sbjct: 180 PEVTINLKEESATTD-------EVFHFGGGLVEYVEWLNQDKTKIHDPISFSVEKDDISV 232 Query: 299 RGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +++W + + Y N+I T +GGTH GL++ LTR + ++ ++ + Sbjct: 233 NVSMQWCS--DAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTLNILGRRSKAIREKGDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + + ++SV + EPEF GQTKT+L +++ ++ VE A+ + YL P Sbjct: 291 LSGEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAVIEQVTEYLEFRPDTLE 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 +L ++ + +K RE V RK ++ LPGKLADC+ + +E+FIVEG+SAG Sbjct: 351 AILSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSSDPRVSEIFIVEGESAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED-LR 534 GSAKQ R+R+ QA+LPL+GKILN+ I NQ+I DL+ ALG TR + +D LR Sbjct: 411 GSAKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVALGLGTRGEEFHKDTLR 470 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K+II+TDADVDGAHI +LLLTFF++ L + ++++ PPL+++ +G + Y + E Sbjct: 471 YHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERGKHAHYCYSE 530 Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 Q +L F + I RFKGLGEM+ QL +T +D +KR L ++ + + + Sbjct: 531 NELQGLLGTFAANAP--YNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLEDAV----E 584 Query: 655 TQDSINKLMGTKADERFKFIQERASFID--DVG 685 + ++LMG K + R + I + A+ ++ Sbjct: 585 ASFTFSRLMGDKVEPRKELILKSAAQFKQQNLD 617 >gi|301155295|emb|CBW14761.1| DNA gyrase, subunit B [Haemophilus parainfluenzae T3T1] Length = 808 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 233/569 (40%), Positives = 347/569 (60%), Gaps = 19/569 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD+L +T+ RQ ++ Q + G P PL + + GT + F P P Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVYEQFYHLGEPQGPLTIIGETQ-ATGTTVRFWPSP 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF FD L K + ++L+ V ++ E + F++ GG++ ++ Sbjct: 180 EIFA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE-------DHFHYEGGIQAFV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHES 332 + +N++ I + F EK G VE A+ W + N + + N I +GGTH + Sbjct: 232 EYLNKNKNPIHPKPFYFSAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + Y E K +S DD V I+SV + +P+F+ QTK KLVS Sbjct: 289 GFRGALTRSLNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSS 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449 + + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ L Sbjct: 349 EVKSAVESAMNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ + Sbjct: 409 PGKLADCQEKDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLS 468 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE Sbjct: 469 SQEVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 528 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHK 597 + ++++ PPL+++ +G + Y D + Sbjct: 529 RGYVYIAQPPLYKVKKGKQERYIKDNDEM 557 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 17/130 (13%) Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 +T F Q++ L+E+ + +T+G K+ ++ +E K + +EI Sbjct: 695 ITAFGQQVNGLLEEG-AY--------VTRGEKTQPVQS---FEQAVEWLMKESRRGLEIQ 742 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM A QL ET MD N R +L+V I + LMG + + R +FI+ Sbjct: 743 RYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAV----AADQLFTTLMGDEVEPRREFIE 798 Query: 676 ERASFIDDVG 685 A ++ Sbjct: 799 MNALRA-NLD 807 >gi|330447266|ref|ZP_08310916.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491457|dbj|GAA05413.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 805 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 350/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDGSVSVSDDGRGIPTELHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I Q + G+P +PL ++ GTRI F P + F + Sbjct: 121 SVVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E + + F + GG++ +++ N Sbjct: 180 -EFQYEILAKRLRELSFLNSGVSIKLNDERE------EGKHDHFMYEGGIQAFVEHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E+ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP +A + +I+ S R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLAEFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + LE K + + + R+KGLGEM QL ET MD R +++V IN + Sbjct: 720 FKDALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTCLMGDQVEPRRNFIEENALKVANLD 804 >gi|145628949|ref|ZP_01784749.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21] gi|144979419|gb|EDJ89105.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|145637927|ref|ZP_01793569.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] gi|145268867|gb|EDK08828.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 352/578 (60%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSEN-------HFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++++E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|39995114|ref|NP_951065.1| DNA gyrase subunit B [Geobacter sulfurreducens PCA] gi|39981876|gb|AAR33338.1| DNA gyrase, B subunit [Geobacter sulfurreducens PCA] gi|298504144|gb|ADI82867.1| DNA gyrase, B subunit [Geobacter sulfurreducens KN400] Length = 795 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 235/571 (41%), Positives = 348/571 (60%), Gaps = 17/571 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A I++LEGLE VR RP MYIG T + LHHL E++DN++DE +AGY N + V++ Sbjct: 8 DYGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G LTVVDNGRGIP + HP K E+ LT LHAGGKFDN++Y++SGGLHGVG+SVV Sbjct: 68 LDGSLTVVDNGRGIPTDIHP-TEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L + + R ++ Q ++ G P +PLE + + RGT+ITF PD IF F Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPLEVMGETKK-RGTKITFLPDDTIFET-TEF 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + + A+L+ V+ + ++E + +F++ GG+ ++++ NR+ Sbjct: 185 SFDVLSQRLRELAFLNAGVRITITDERE------EGKHHDFHYEGGIVSFVEYLNRNRTA 238 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + K EK G +E A+ + + ++ S+ N I T EGGTH G R ALTR Sbjct: 239 LHPKPIYFKGEKAGV---EMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRT 295 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + K ++I +DL ++SV I +P+F GQTKTKL + + + VE+ Sbjct: 296 MNTYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESL 355 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + +L +NP A ++ IE + R RK RE RK A+ LPGKLADC + Sbjct: 356 MNEKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQE 415 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q+I L+ Sbjct: 416 RDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLIT 475 Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + + LRY ++I+MTDADVDG+HI +LLLTFF+++M +++E+ HL++ P Sbjct: 476 ALGTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PL+++ +G K +Y +E Q L E Sbjct: 536 PLYKVKRGRKELYLRNEAAMQAYLLEEGTED 566 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L F K + I R+KGLGEM QL ET M+ RTLL+V+I + + Sbjct: 712 DLLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAI----EADTI 767 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 768 FTILMGDQVEPRRDFIEQNALNVSNLD 794 >gi|145635346|ref|ZP_01791048.1| DNA gyrase subunit B [Haemophilus influenzae PittAA] gi|145267352|gb|EDK07354.1| DNA gyrase subunit B [Haemophilus influenzae PittAA] Length = 806 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K + ++++E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRN---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|145638524|ref|ZP_01794133.1| DNA gyrase subunit B [Haemophilus influenzae PittII] gi|145272119|gb|EDK12027.1| DNA gyrase subunit B [Haemophilus influenzae PittII] gi|309750028|gb|ADO80012.1| DNA gyrase subunit B [Haemophilus influenzae R2866] Length = 806 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DYFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++++E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|68249167|ref|YP_248279.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP] gi|229845696|ref|ZP_04465819.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] gi|68057366|gb|AAX87619.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP] gi|229811382|gb|EEP47088.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] Length = 806 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +T+G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VTRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|270264122|ref|ZP_06192389.1| DNA gyrase subunit B [Serratia odorifera 4Rx13] gi|270041771|gb|EFA14868.1| DNA gyrase subunit B [Serratia odorifera 4Rx13] Length = 804 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 226/574 (39%), Positives = 348/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I+V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + ++V D+GRGIP H + S ++I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 VIHADNSVSVQDDGRGIPTGIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q ++ G P +PL+ + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V + E + F++ GG+K +++ +N Sbjct: 180 VEFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE-------DHFHYEGGIKAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVDYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMDQYQIAIAMDG 563 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|78221232|ref|YP_382979.1| DNA gyrase subunit B [Geobacter metallireducens GS-15] gi|78192487|gb|ABB30254.1| DNA gyrase subunit B [Geobacter metallireducens GS-15] Length = 795 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 238/572 (41%), Positives = 352/572 (61%), Gaps = 17/572 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 ++Y A I++LEGLE VR RP MYIG T + LHHL E++DN++DE +AGY N + V++ Sbjct: 7 NDYGADKIKVLEGLEAVRKRPAMYIGSTASQGLHHLVYEIVDNSIDEALAGYCNEVNVTI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +TVVDNGRGIP E HP K E+ LT LHAGGKFDN++Y++SGGLHGVG+SV Sbjct: 67 HLDGSITVVDNGRGIPTEMHP-TEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSV 125 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L + + R +F Q ++ G PL+PLE + + RGTRITF PD IF Sbjct: 126 VNALSKKLELGIRRDGKVFQQSYAYGAPLTPLEIVGETKK-RGTRITFLPDDTIFET-TE 183 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + + A+L+ V+ S ++E + +F++ GG+ ++++ NR+ Sbjct: 184 FSFDILSQRLRELAFLNAGVRITISDERE------EGKHHDFHYEGGIVSFVEYLNRNRT 237 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ + + E+ G +E AI + + ++ ++ N I T EGGTH G R ALTR Sbjct: 238 VLHPKPVYFRGERAGI---DMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTR 294 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA + K +SI +DL ++SV I +P+F GQTKTKL + + + VE+ Sbjct: 295 SMNSYAAANELTKKEKVSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVES 354 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + +L +NP A ++ IE + R RK RE RK+A+ LPGKLADC Sbjct: 355 LMNEQLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQ 414 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q+I L+ Sbjct: 415 ERDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLI 474 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + LRY ++I+MTDADVDG+HI +LLLTFF+++M +++E+ HL++ Sbjct: 475 TALGTSIGKEDFDVAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQ 534 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G K +Y +E Q L E Sbjct: 535 PPLYKVKRGRKELYLRNEAAMQAYLLEEGTED 566 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L F K + I R+KGLGEM QL ET M+ RTLL+V+I + + Sbjct: 712 DLLSFFMDSAKKGLSIQRYKGLGEMNPDQLWETTMEPTNRTLLQVKIEDAI----EADTI 767 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 768 FTILMGDQVEPRRDFIEKNALNVSNLD 794 >gi|190573692|ref|YP_001971537.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia K279a] gi|190011614|emb|CAQ45233.1| putative topoisomerase IV subunit B [Stenotrophomonas maltophilia K279a] Length = 629 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 244/642 (38%), Positives = 361/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IE++L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRG+PV+ HP+ +E+ILT LHAGGKF N+ Y SGGLHGVG+SVVN Sbjct: 62 DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS + V + R+ F G +PLE V + GTR+ F PDPK F F Sbjct: 121 ALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++KA L + + + E + +Y+ GL+ YL+ ++ R Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGEVDTWYYEDGLRDYLKLEMGERES 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGNLKKDTE---VVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A VE A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F L QN K+ + IER+ RL+ ++ V RK + LPGKLADC Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA++PLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KVII+ DAD DG HIA+LL F + L++ H+F+ PPLF Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 RI G + YA DEE K+ +L++ ++ KG I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ ++ + L +A +R +++ + Sbjct: 587 LVQLTVDDREQTSSLMDML---LAKKRASDRKGWLESKGDLA 625 >gi|260581013|ref|ZP_05848836.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW] gi|260092372|gb|EEW76312.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW] Length = 806 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|145633477|ref|ZP_01789206.1| DNA gyrase subunit B [Haemophilus influenzae 3655] gi|144985846|gb|EDJ92454.1| DNA gyrase subunit B [Haemophilus influenzae 3655] Length = 806 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 234/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DYFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +T+G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VTRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|302866555|ref|YP_003835192.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029] gi|302569414|gb|ADL45616.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC 27029] Length = 704 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 225/681 (33%), Positives = 337/681 (49%), Gaps = 52/681 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A + LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A ++V L Sbjct: 28 YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATKVDVILHA 87 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIP + H K S +E++LT LHAGGKF S Y+ SGGLHGVG S VN Sbjct: 88 DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 146 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NKRGTRI 207 ALS VTV R + + F G+P + GT I Sbjct: 147 ALSRRFDVTVRRGGKVHAMSFRHGVPGVFDGDGPDAPFTPGPGLQIVGAMKRGQRTGTSI 206 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 + DP+ F A D + ++ A+L V E P +E F+FP Sbjct: 207 RWWHDPRYFETGAALDTEAVRLKLRNTAFLVPGVAYRLRD-----ETGEEPVEESFHFPD 261 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312 GL ++ S E R VE A W Sbjct: 262 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEVAFRWGTGY 321 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368 + NTI GGTH G AL R + A + + + DD++ Sbjct: 322 ERTVECFTNTIRNAHGGTHRKGFERALARTLADAARNARGLLKPKEDAPTLDDVLEGMTA 381 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426 ++ V I EP+F QTK +L + + ++ + +L + EA +L+ +++ + Sbjct: 382 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHLKSWLEDRRTKAEARTVLQKIVDAA 441 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 RL +++Q++ RKTA+ +P KL DC +ELFIVEGDSA G+++ AR+ Sbjct: 442 RVRLTQKQQKDAARRKTALEGAAMPAKLVDCRATGVERSELFIVEGDSALGTSRMARSSE 501 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LP+RGKILNV A +++ +N + +VQ LG + + LRY +V+IM DAD Sbjct: 502 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSALRYGRVLIMADAD 561 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602 VDGAHI +LL+T F + M LIE L+ PPL +IT + ++VY + + + + Sbjct: 562 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRNPQTVYTYTQAEMEATVR 621 Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + +K GK + I RFKGLGEM A +L ET M+ R + R+ ++ ++ + + Sbjct: 622 KLEKTGKQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VEAAERILEL 677 Query: 662 LMGTKADERFKFIQERASFID 682 LMG K + R ++ + A +D Sbjct: 678 LMGEKVEPRRNWLIDSADRVD 698 >gi|325294445|ref|YP_004280959.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064893|gb|ADY72900.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 804 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 231/571 (40%), Positives = 341/571 (59%), Gaps = 16/571 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ YDAS+I++LEGLE VR RPGMYIG T LHHL E+IDN++DE +AGY I+ Sbjct: 2 ANNEKYDASAIKVLEGLEAVRKRPGMYIGDTGSYGLHHLVFEIIDNSVDEALAGYCTEIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV DNGRGIPV+ HP++ K EI++T LHAGGKF+ Y+ SGGLHGVG Sbjct: 62 VIIHEDNSITVEDNGRGIPVDIHPEY-GKPAAEIVMTVLHAGGKFEKKAYKYSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L + + + ++ Q + +G P++ + + RGT +TF+PDP+IF Sbjct: 121 VSVVNALSEWLKLEIHKDGKVYKQIYEKGNPVTEFACIGETKK-RGTIVTFKPDPEIFEV 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + A+L+ +K ++ +K E FY+ GG+ +++ E Sbjct: 180 T-EFSWDILANRLRELAFLNKGLKITLIDERTEPQKE-----ETFYYEGGIVEFVKKINE 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + + EK VE A+ + ++ S+ N I T EGGTH SG R A Sbjct: 234 KKDPLFPNPIYIAGEKDDIL---VEVALQYNSTYTEQVFSFVNNINTREGGTHVSGFRTA 290 Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR I K+ E IS+ DD+ V ++SV + P+F GQTK KL + + + Sbjct: 291 LTRAIIKFIEENNLLPKNAKISVTGDDVREGLVTVISVKVPNPQFEGQTKAKLGNSEVRP 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + D +L + P K+ E VI + R ++ RE RK+A+ + LPGKL Sbjct: 351 IVASIVYDKLYAFLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ TELF+VEGDSAGGSAKQ R+R QA+LPL+GKI+NV A EK+ +N +I Sbjct: 411 ADCSERDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEI 470 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 ++ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++ +++E+ HL+ Sbjct: 471 KTIITALGTGIGKNFDMSKLRYSKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 + PPL+R+ +G + +Y + + ++ +F Sbjct: 531 IAQPPLYRVKKGKREMYIKSDSELESVVLDF 561 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 9/133 (6%) Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRI-TQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 LL++ Y+ L + L PP +++ T+ + E L + K G I Sbjct: 679 LLISDLYKHGRGLKSRIREKLGEPP-YKVETKKGEVKEFLTLEELYNYLLQVGKEG---I 734 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 I R+KGLGEM QL ET M+ RTLL+V + + + LMG K + R + Sbjct: 735 YIQRYKGLGEMNPDQLWETTMNPENRTLLKVSVEDAVK----ADEIFTILMGDKVEPRKE 790 Query: 673 FIQERASFIDDVG 685 FIQ+ A + ++ Sbjct: 791 FIQKFAKEVRNLD 803 >gi|268593491|ref|ZP_06127712.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131] gi|291310913|gb|EFE51366.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131] Length = 804 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSISVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G P PL + ++ GTR+ F P F Sbjct: 121 SVVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ E + F++ GG+K +++ N Sbjct: 180 TEFEYDVLAKRLRELSFLNSGVSIKLVDKRDGKE-------DHFHYEGGIKAFVEYLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE ++ W + + + N I +GGTH +G R A+ Sbjct: 233 KTPIHPSVFYFSTEKDGI---GVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K ++ DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYMEKEGYQKKSKVNATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETMMNEKLVEYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ L G Sbjct: 530 AQPPLYKVKRGKQEQYIKDDDAMDDYLISIALDG 563 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + D + ++ L + + + + R+KGLGEM QL ET M+ R ++ Sbjct: 707 IKRGERRQ---DISNFEEALAWLTRESRRGLYVQRYKGLGEMNPEQLWETTMNPETRRMM 763 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV + + T LMG + R FI+E A ++ Sbjct: 764 RVTVKDAI----ATDLLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|229524916|ref|ZP_04414321.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426] gi|229338497|gb|EEO03514.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426] Length = 805 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 349/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDT-ERTGTTVRFWPSAQTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNQERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALAMDG 564 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 LE K + + I R+KGLGEM QL ET MD R +++V I + Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----AD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + ++ Sbjct: 776 ELFTTLMGDQVEPRRAFIETNALKVANLD 804 >gi|323450751|gb|EGB06631.1| hypothetical protein AURANDRAFT_29093 [Aureococcus anophagefferens] Length = 698 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 246/694 (35%), Positives = 356/694 (51%), Gaps = 42/694 (6%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 +S + ++ + Y A I +LEGLE VR RPGMYIG T K LHHL E+ Sbjct: 16 SAPRSSAATRTTTRLYEATTGAYGAGQITVLEGLEAVRKRPGMYIGSTGPKGLHHLCFEI 75 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN++DEV+AG+A + V L +G V D+GRGIP + HP+ KS LE +L LHAGG Sbjct: 76 LDNSIDEVMAGHATKVAVELRADGSCAVGDDGRGIPCDLHPQ-TGKSALETVLCVLHAGG 134 Query: 142 KFDN--STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 KF S Y +SGGLHGVG+SVVNALS +L V V R ++ S FSRG P + + + Sbjct: 135 KFGGAESGYRVSGGLHGVGLSVVNALSHQLDVEVTRDGSVASMAFSRGTPTGDMTRVDAA 194 Query: 200 RN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI- 257 GTR+ F PD IF FD L A+L+ V+ + +E +K Sbjct: 195 PGAATGTRVVFSPDGDIFEKTV-FDYDVLAARMDELAFLNAGVELSLTDFREPKKKKKKG 253 Query: 258 ---PEKEEFYFPGGLKTYLQTKLENRSLIS-------------SEIFTGKTEKKGTHRGT 301 P + F GG+ Y ++ + E F + K G Sbjct: 254 DGGPRVDVFRHDGGISEYADFLTSEKTPLHAALGPSVTKGKHTKEAFVARGTKDGV-EVE 312 Query: 302 VEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--S 359 + S+ N I T +GGTH GLR + R + A+ + + ++ + Sbjct: 313 CALRWSSDAYAEVTVSFANGIRTADGGTHVDGLRSVVARSVNAAAKRSPSGKSDNAYVPG 372 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 + + +L V + EPEF GQTKT+L S ++ V+ + +P ++ Sbjct: 373 EYVREGLTAVLLVNVPEPEFEGQTKTRLGSPGVRQVVDAVVGAALQQLFEWHPQALKAIV 432 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + + + + R++ R+ + + LPGKLADCS A +E+FIVEGDSA GSA Sbjct: 433 DKALAAQKAAGAAKAARDLVRRKSLLATTVLPGKLADCSLRDAALSEIFIVEGDSAAGSA 492 Query: 479 KQARNRSNQAVLP----LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDL 533 KQ R+R +QA+LP LRGKILNV E+I N ++ L+ ALG R ++ ++L Sbjct: 493 KQGRDRESQAILPLRAVLRGKILNVEKCAPERIYLNAELQALISALGLGVRGEEFNRDNL 552 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHD 593 RY +++IMTDADVDGAHI +L+LTFFY+ LIE H+F+ PPL+++++G K Y Sbjct: 553 RYHRIVIMTDADVDGAHIRALILTFFYRYQRSLIEDGHVFIACPPLYKVSRGRKDTYCWS 612 Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ + L G GK I RFKGLGEM+ +QL T MD R + +V ++ Sbjct: 613 DDDLEAALA-----GDGKATIQRFKGLGEMMPNQLWATTMDPTARKMQQVVVDD----AA 663 Query: 654 DTQDSINKLMGTKADERFKFIQER--ASFIDDVG 685 I LMG ER ++I A +D+ Sbjct: 664 KADKVITLLMGDSVAERKEYIVANSVALDAEDLD 697 >gi|327395906|dbj|BAK13328.1| DNA gyrase subunit B GyrB [Pantoea ananatis AJ13355] Length = 802 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 18/576 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L +T+ R+ + Q + G+P +PL + GTRI F P F + Sbjct: 121 SVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + F++ GG++ +++ +N Sbjct: 180 TDFEYDILAKRLRELSFLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 233 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 EQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 PPL+++ +G + Y D+E + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMLQYQIAIALDGTS 565 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ +K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 717 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 772 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 773 QLFTTLMGDAVEPRRAFIEENALKAANID 801 >gi|254524349|ref|ZP_05136404.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14] gi|219721940|gb|EED40465.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14] Length = 629 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 245/642 (38%), Positives = 361/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IE++L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLYK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRG+PV+ HP+ +E+ILT LHAGGKF N+ Y SGGLHGVG+SVVN Sbjct: 62 DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFSNNNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS + V + R+ F G +PLE V + GTR+ F PDPK F F Sbjct: 121 ALSTLVEVHIKREGAEHRITFRNGDRATPLEVVGSVGKKNTGTRVRFWPDPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++KA L + + + E + +Y+ GL+ YL+ +L R Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGEVDTWYYEDGLRDYLKLELGERES 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGNLKKDTE---VVDWAVAWLPEGELVQESYVNLIPTAQHGTHVNGLRTGLTEA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A VE A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F L QN K+ + IER+ RL+ ++ V RK + LPGKLADC Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA++PLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAIMPLRGKILNTWEVSSNSVLASEEVHNLAIAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KVII+ DAD DG HIA+LL F + L++ H+F+ PPLF Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 RI G + YA DEE K+ +L++ ++ KG I ++RFKGLGEM QL+E+ + + R Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAINVTRFKGLGEMNPPQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ ++ + L +A +R +++ + Sbjct: 587 LVQLTVDDGEQTRSLMDML---LAKKRASDRKGWLETKGDLA 625 >gi|329911523|ref|ZP_08275558.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480] gi|327545863|gb|EGF30975.1| Topoisomerase IV subunit B [Oxalobacteraceae bacterium IMCC9480] Length = 662 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 252/674 (37%), Positives = 363/674 (53%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++A +Y SSIR+L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 2 ATKKTAPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYC 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151 I V+ + +G +TV D+GRGIPV HP+ T+EI+ T LHAGGKFD + Y S Sbjct: 59 KHITVTQNADGSVTVDDDGRGIPVGIHPE-EGVPTVEIVFTRLHAGGKFDKGSGGAYAFS 117 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209 GGLHGVG+SV NALS L +TV R+ + S F+ G + + + R+ + GTR+T Sbjct: 118 GGLHGVGVSVTNALSTRLEITVWREGGVHSLAFASGDLIEKISTRPITRDDKKSGTRVTA 177 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDPK F + L ++ +SKA L VK K E + + + GL Sbjct: 178 WPDPKYFDS-PAISQSELQRLLRSKAVLLPGVKVTLVNGK-------TGESQTWQYEQGL 229 Query: 270 KTYLQTKLENRSLISSEIFTGKTE----KKGTHRGTVE---WAIAWCEENP-EITSYCNT 321 + YL L + I + E K E W +AW E+ SY N Sbjct: 230 RGYLVECLAQATSSDPLIPLFEGEQYAGKDAEGFAEGEGAAWVVAWTEDGGVVRESYVNL 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K +AE+ + + ++S+D+ +LS + +P+F Sbjct: 290 IPTSAGGTHESGLREGLFGAVKSFAEMHSLLPKGVKLLSEDVFARVSFVLSAKVLDPQFQ 349 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V +R + +L ++ KL + VI++++ RLR ++ E + Sbjct: 350 GQIKERLNSRDAVKLVSTFVRPSLELWLSEHVEYGKKLADLVIKQAQSRLRSSQKVEKKK 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC N E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SSGVAVL--PGKLTDCESNDIKRNEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAW 467 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 +++ N +I D+ A+G + D LRY ++ I++DADVDG+HI LLLT Sbjct: 468 ETERDRLFANNEIHDIAVAIGVDPHGKNDTPDLSNLRYGRICILSDADVDGSHIQVLLLT 527 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LI+ H+ + PPLFR+ +G K +YA D I ++ +K G + Sbjct: 528 LFFKHFPKLIDHGHICIARPPLFRVDAPARGKKPAQKIYALDSGELVAIEDKLRKDGVKE 587 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 G ISRFKGLGEM A QL ET M+ + R LL V L +++ N LMG +A Sbjct: 588 GAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPVAF--GEFDLVSSEERFNMLMGKGEAA 645 Query: 669 ERFKFIQERASFID 682 R +I+E + + Sbjct: 646 ARRAWIEEHGNEAE 659 >gi|225351335|ref|ZP_03742358.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157679|gb|EEG70962.1| hypothetical protein BIFPSEUDO_02928 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 776 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 251/757 (33%), Positives = 350/757 (46%), Gaps = 121/757 (15%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 DNY A S+ +LEGL+ VR RPGMYIG TD + L H E+IDN++DE +AG N I V+L Sbjct: 19 DNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIVVTL 78 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G + V DNGRGIPV+ PK + +E++LT LHAG KF NS+Y SGGLHGVG SV Sbjct: 79 HSDGSVEVADNGRGIPVDIEPK-TKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 137 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPL------------------------SPLEKKE 197 VNALS L V V R F +G P + LE Sbjct: 138 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDADPEHPSPDAPFKRTRKNRPTELEIIG 197 Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK-------TCWSCDK 249 KV GTRI + DP+IF D A F +L+ + ++L +K + D+ Sbjct: 198 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETGDE 257 Query: 250 EIAE--------------------------------------------------KYGIPE 259 + E KY Sbjct: 258 SVDEMLEVDDIANAAGDEPQEIAESDESEHDAAGHEEAAEQIEEADVAAQPQGSKYTHSR 317 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303 EEF GG+K ++ + ++ + TG+ +K T V+ Sbjct: 318 IEEFCHTGGVKDFVDYLSKGEAVSAIWRITGEDTYVEETQAVGDGGELHAQKVTRNCAVD 377 Query: 304 WAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362 A+ W + S+ N + T GGTH G + LT+ I+K E K +++ ++ Sbjct: 378 IAMRWTNGYDTTMRSFVNVVETPGGGTHVDGYLLGLTKQIRKAIEDNARKLKVNLKDSNM 437 Query: 363 M-------ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 V +++V I EP+F GQTK L + + V F + + Sbjct: 438 KVERDDILAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDRQFGEMITGSKRGY 497 Query: 416 TKL----LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 + LE ++ R++ RK +E RK A+ +P KL+DC ELFIVE Sbjct: 498 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 557 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSA G+AK ARN QA+LP+RGKILNV A ++ +N++ ++Q +G + + + Sbjct: 558 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDI 617 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQGT 586 E RY KVI+MTDADVDGAHI LLLT FY M LIE H++ PPL RI Sbjct: 618 EQARYNKVIMMTDADVDGAHIRILLLTLFYCYMRPLIEYGHVYAAVPPLHRIALTGAHKG 677 Query: 587 KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + +Y + ++ L + KKH +I R+KGLGEM A QL +T MD R L R+ + Sbjct: 678 EYIYTYSDDELAGKLADLDKKHISYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 737 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 + + LMG R FI E A D Sbjct: 738 ED----AEQASQIFSLLMGDDVPPRKAFIVENADDFD 770 >gi|239982746|ref|ZP_04705270.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074] gi|291454594|ref|ZP_06593984.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074] gi|291357543|gb|EFE84445.1| DNA topoisomerase IV subunit B [Streptomyces albus J1074] Length = 707 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 244/706 (34%), Positives = 349/706 (49%), Gaps = 52/706 (7%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 ++ + NY A + +LEGLE VR RPGMYIG TD + L H E+I Sbjct: 2 TAETSVPSTALLAGADQDGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEII 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE + GY + IEV L +G + V DNGRGIPV+ PK S +E++LT LHAGGK Sbjct: 62 DNSVDEALGGYCDHIEVILHDDGSVEVRDNGRGIPVDVEPK-TGLSGVEVVLTKLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------- 189 F +Y SGGLHGVG SVVNALS L + V R + F RG+P Sbjct: 121 FGGGSYAASGGLHGVGASVVNALSARLDIEVDRGGATHAISFRRGVPGAFAKTGVDAPFE 180 Query: 190 --LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 + K+ + + GTR+ + D +IF A D A L + + A+L + Sbjct: 181 AASGLRKVKKVAKARTGTRVRYWADRQIFLKDAKLDLATLHQRARQTAFLVPGLTLVVRD 240 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-------------- 293 + + + E E F F GG+ + + ++R+L +GK Sbjct: 241 EYGLGDGGSKGE-ESFRFDGGISEFCEYLADDRALCDVLRLSGKGTFKETVPVLDDFGQM 299 Query: 294 --KKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ 350 + T V+ A+ W +I S+ N I T +GGTH +G +LTR + + + Sbjct: 300 TPTEVTRELGVDIALRWGTGYDTKIRSFVNIIATPKGGTHVTGFERSLTRTMNEVLRSAK 359 Query: 351 NKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL 408 R DD + +++V + EP+F GQTK L + A R V + +L Sbjct: 360 LLRVAEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAANRIVSQVVAKELKAFL 419 Query: 409 VQNPIEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHG 463 +A V+E+ R+ + RKTA+ LP KLADC + Sbjct: 420 TSTKRDAKAQARAVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVER 479 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +ELFIVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G Sbjct: 480 SELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVSDMLKNAECGAIIQVIGAG 539 Query: 524 TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI- 582 + + + RY K+I++ DADVDGAHI LLLT F + M ++E +F PPL RI Sbjct: 540 SGRTFDLDAARYGKIILLVDADVDGAHIRCLLLTLFQRYMRPMVESGRVFAAVPPLHRIE 599 Query: 583 ----TQGT-KSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 +G K VY + + + L EF +K+ + K I R+KGLGEM A QL ET MD Sbjct: 600 LVQPKRGQDKYVYTYSDRELRDTLMEFQRKNVRYKDSIQRYKGLGEMDADQLAETTMDPR 659 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL R+ I L ++ + LMG + R +FI A+ +D Sbjct: 660 HRTLRRINI----ADLDSSEHVFDLLMGNEVAPRKEFITSSAATLD 701 >gi|281356695|ref|ZP_06243186.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548] gi|281316822|gb|EFB00845.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548] Length = 824 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 232/593 (39%), Positives = 350/593 (59%), Gaps = 16/593 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 ++ Y AS I +LEGLE VR+RP MYIG T ++ LHHL EV+DN++DE +AGYA+ I Sbjct: 9 TGSASEYSASKITVLEGLEAVRVRPSMYIGDTGQRGLHHLVYEVVDNSIDEALAGYASHI 68 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV++ + ++V D+GRGIPV+ H + +K +E++LT LHAGGKFD+++Y++SGGLHGV Sbjct: 69 EVTIHSDNSISVEDDGRGIPVDMH-EGEHKPAVEVVLTILHAGGKFDHNSYKVSGGLHGV 127 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+S VNALSD L V R + ++ +F RG+ + PL + RGTR++F+PD IF Sbjct: 128 GVSCVNALSDWLVAEVYRNSKAYTIRFERGVTVDPLRELGPTTK-RGTRVSFKPDGTIFP 186 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D + L K + A+L+ ++ + ++ E E F++ GG++ ++ Sbjct: 187 DTV-YVWDILAKRLRELAFLNSGIRITLTDERL-EEGQTAGRSETFHYEGGIREFVSMLN 244 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N+++I+ ++ E+ G VE A+ + + I SY N I T EGG+H +G + Sbjct: 245 VNKTVINPDVIYFHRERNGI---DVEVAMQYNDGTAENIYSYANNINTIEGGSHLTGFQT 301 Query: 337 ALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 ALTR I Y + T K + D+ ++SV + +P+F GQTKTKL + + + V Sbjct: 302 ALTRTINNYTK-TMMKNDTPLSGTDVREGLSAVISVKVPDPQFEGQTKTKLGNSEVRGIV 360 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLAD 455 E+ + D YL ++P A + + S R RK RE RK A+ + LPGKLAD Sbjct: 361 ESVINDELGAYLEEHPKIAENIGNNAMLASRAREAARKARETVRRKGALEGIGLPGKLAD 420 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS EL+IVEGDSAGGSAK R+ QA+LP+RGK+LNV +K+ N++I Sbjct: 421 CSNRDPSMCELYIVEGDSAGGSAKSGRDSGFQAILPIRGKLLNVEKVRFDKVLENKEIQS 480 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L+ A+GC ++ RY +V+IMTDADVDG+HI +LLLTFF+++M LIE ++++ Sbjct: 481 LIYAIGCGIAEEFDVSKARYHRVVIMTDADVDGSHIRTLLLTFFFRQMKPLIEAGYVYIA 540 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE-MLASQ 627 PPLF++T+G K Y E+ L + + + G GE + Q Sbjct: 541 KPPLFKVTKGRKEQYIDTEDQLDSYLVRLGEED---LTVK--NGDGELLTPEQ 588 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++ + +++G+ + I R+KGLGEM A QL ET MD RT+++V + + + Sbjct: 739 LEELFKLVRQNGQAGLRIQRYKGLGEMNAEQLWETTMDPATRTMIKVRMEDAV----EAD 794 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R ++I++ A+ + D+ Sbjct: 795 QIFNLLMGDVVEPRREYIEKHAAGVKDLD 823 >gi|260582729|ref|ZP_05850516.1| DNA gyrase, B subunit [Haemophilus influenzae NT127] gi|260094179|gb|EEW78080.1| DNA gyrase, B subunit [Haemophilus influenzae NT127] Length = 806 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|309378433|emb|CBX22928.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 661 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + + L ++ +KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSISELERLLCAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I++ + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQISEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|312601000|gb|ADQ90255.1| Topoisomerase IV subunit B [Mycoplasma hyopneumoniae 168] Length = 642 Score = 522 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 350/656 (53%), Gaps = 35/656 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y +++L+GLE VR RPGMYIG TD+ LH L E+ DNA+DE IAG+AN I + ++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIP E H K K+ +E++ + LH+G KF Y+ +GGLHGVG SVV Sbjct: 62 SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++L V + R +F F G + K GT+I F PD +F + F Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTITGTKIRFWPDFSLF-SHSEF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D+ ++ + +L +K + K EK F G++++++ ++ Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I +I T K+ VE+ + + I S+ N + T+ GG+HE+G + + Sbjct: 233 IHDKIITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289 Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I Y + + I+ + +LS+ I E EF GQTK KL ++ A+ E Sbjct: 290 INNYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455 + + N A+K++ +++E +R + + + + ++ K L GKL Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + A ELF+VEG+SAGGSAK ARNR QA+LPL+GKI+N + N++I+ Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG + ++L Y K+IIMTDAD DGAHI L+LTF + M LIE+ +++ Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529 Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI+ +G K +Y DEE +K ++ ++I R+KGLGEM A+QL +T MD Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684 +RTL +V I +++ LMG +AD R +I++ FI+++ Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636 >gi|148825154|ref|YP_001289907.1| DNA gyrase subunit B [Haemophilus influenzae PittEE] gi|89892398|gb|ABD78983.1| HI0567-like protein [Haemophilus influenzae] gi|148715314|gb|ABQ97524.1| DNA gyrase subunit B [Haemophilus influenzae PittEE] Length = 806 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P +PL GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNT-ETTGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ AE + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGAE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK RE+ R+ + LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRT---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|309972282|gb|ADO95483.1| DNA gyrase subunit B [Haemophilus influenzae R2846] Length = 806 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|291615640|ref|YP_003518382.1| GyrB [Pantoea ananatis LMG 20103] gi|291150670|gb|ADD75254.1| GyrB [Pantoea ananatis LMG 20103] Length = 803 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 18/576 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 3 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L +T+ R+ + Q + G+P +PL + GTRI F P F + Sbjct: 122 SVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++ + F++ GG++ +++ +N Sbjct: 181 TDFEYDILAKRLRELSFLNSGVSIRLEDKRDA-------RNDHFHYEGGIRAFVEYLNKN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPTVFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 351 EQQMNELLAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ +Q++ Sbjct: 411 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMLQYQIAIALDGTS 566 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ +K + + + R+KGLGEM QL ET MD + R +LRV I + Sbjct: 718 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 774 QLFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|300721093|ref|YP_003710361.1| DNA gyrase subunit B [Xenorhabdus nematophila ATCC 19061] gi|297627578|emb|CBJ88097.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus nematophila ATCC 19061] Length = 804 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 227/579 (39%), Positives = 343/579 (59%), Gaps = 18/579 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R + Q + G+P SPL + GT + F P F Sbjct: 121 SVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDT-EQTGTTVRFWPSMDTFKIN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V + AE F++ GG+K +++ N Sbjct: 180 TEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDL-------FHYKGGIKAFVEFLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE ++ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 PPL+++ +G + Y D++ + G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEAYQMSIALDGAALYT 568 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + LE K + + I R+KGLGEM QL ET M+ R ++RV + + T Sbjct: 719 FEHALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 LLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|126208297|ref|YP_001053522.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae L20] gi|126097089|gb|ABN73917.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 810 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 236/584 (40%), Positives = 354/584 (60%), Gaps = 20/584 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I +++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CKDIIITIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL +K GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V +++ E E F + GG+K Y+ Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 IE ++++ PPL+++ +G + Y D + + + G G Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 572 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ + + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809 >gi|313812934|gb|EFS50648.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1] Length = 719 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 339/720 (47%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGKGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLIHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P+ S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R+ GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRDVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|319638655|ref|ZP_07993415.1| topoisomerase IV subunit B [Neisseria mucosa C102] gi|317400039|gb|EFV80700.1| topoisomerase IV subunit B [Neisseria mucosa C102] Length = 661 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 245/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIP+ HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPIGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I FS G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFSGGDVIEPLTEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 LI H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLIADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 +++ + + Sbjct: 650 MEKEGDTAE-LD 660 >gi|159037300|ref|YP_001536553.1| DNA gyrase subunit B [Salinispora arenicola CNS-205] gi|157916135|gb|ABV97562.1| DNA gyrase subunit B domain protein [Salinispora arenicola CNS-205] Length = 730 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 232/715 (32%), Positives = 345/715 (48%), Gaps = 56/715 (7%) Query: 10 STLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT 69 P ++ + ++ E A Y+A + LEGL+ VR RPGMYIG T Sbjct: 24 CRTPADARRARHHTAETWEYDQLTAEPETL----YEADDLTHLEGLDAVRKRPGMYIGST 79 Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 D + + HL +E++DN+ DE +AG+A IEV+L +G + V D+GRGIP + H K S Sbjct: 80 DSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHADGSVQVDDDGRGIPTDVHAK-SGISG 138 Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189 +E++LT LHAGGKF S Y+ SGGLHGVG S VNALS VTV R I + F G+P Sbjct: 139 VELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNALSRRFDVTVRRGGKIHTMSFRHGVP 198 Query: 190 LSPLEKKEKV----------------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQS 233 + + R + GT I + DP+ F A DA + ++ Sbjct: 199 GTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSIRYWYDPRYFEVGATLDAEAVRMKLRN 258 Query: 234 KAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE 293 A+L V P +E F++P GL + S I E Sbjct: 259 TAFLVPGVSYLLRD-----HTGAEPVEERFHYPNGLTDMVDFLAPAGDRPVSGILVVSGE 313 Query: 294 ---------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337 R VE A W + NTI GGTH G A Sbjct: 314 GTYRENAADANGVMQANVPRRAEVELAFRWGTGYERTVECFTNTIRNAHGGTHRKGFERA 373 Query: 338 LTRGIKKYAELTQ---NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + + + DD++ ++ V I EP+F QTK +L + + Sbjct: 374 LTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVRIPEPQFTSQTKDELSTAGITK 433 Query: 395 TVENALRDPFDHYLVQ--NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 ++ + +L + EA +L+ + + + RL +++Q++ RKTA+ +P Sbjct: 434 VLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLTQKQQKDAARRKTALEGASMPA 493 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC +E+FIVEGDSA G+A+ AR+ QA+LP+RGKILNV A +++ +N Sbjct: 494 KLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALLPIRGKILNVQKANLQQVLDNA 553 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + +VQ LG + + +RY +V+IM DADVDGAHI +LL+T F + M LIE Sbjct: 554 ECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADVDGAHIRTLLITLFARYMRPLIEAGR 613 Query: 572 LFLISPPLFRIT---QGTKSVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQ 627 L+ PPL +IT + ++VY + +E + + +K GK + I RFKGLGEM A + Sbjct: 614 LYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKAGKQIVTPIPRFKGLGEMNADE 673 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L ET M+ R + R+ + + + + LMG K + R ++ A +D Sbjct: 674 LWETTMNPAGRAVRRITLED----AEAAEQVLELLMGEKVEPRRNWLIASADRVD 724 >gi|50123356|ref|YP_052523.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043] gi|49613882|emb|CAG77334.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043] Length = 805 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 221/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ + Q + G+ +PL + ++ GT + F P + F + Sbjct: 121 SVVNALSEKLKLVIHREGKLHEQTYKHGVAQAPLAVTGET-DRTGTTVRFWPSHETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V D+E + + +++ GG+K ++ N Sbjct: 180 LEFEYEILAKRLRELSFLNSGVSIRLIDDREKD------KADHYHYDGGIKAFVDYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNVFYFSTMKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTYMDKEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESLVNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804 >gi|46143431|ref|ZP_00135256.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|165976237|ref|YP_001651830.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150147|ref|YP_001968672.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251321|ref|ZP_07337499.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252819|ref|ZP_07338978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245683|ref|ZP_07527769.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247805|ref|ZP_07529841.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250051|ref|ZP_07532015.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252443|ref|ZP_07534339.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254650|ref|ZP_07536479.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256870|ref|ZP_07538648.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259097|ref|ZP_07540827.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261303|ref|ZP_07542978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263484|ref|ZP_07545099.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876338|gb|ABY69386.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915278|gb|ACE61530.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648249|gb|EFL78446.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649863|gb|EFL80041.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853385|gb|EFM85604.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855607|gb|EFM87774.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857911|gb|EFM90003.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860035|gb|EFM92052.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862395|gb|EFM94360.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864604|gb|EFM96509.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866764|gb|EFM98622.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869034|gb|EFN00836.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871127|gb|EFN02856.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 810 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 236/584 (40%), Positives = 354/584 (60%), Gaps = 20/584 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I +++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CKDIIITIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL +K GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V +++ E E F + GG+K Y+ Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 IE ++++ PPL+++ +G + Y D + + + G G Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 572 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ + + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809 >gi|163856283|ref|YP_001630581.1| DNA topoisomerase IV subunit B [Bordetella petrii DSM 12804] gi|163260011|emb|CAP42312.1| topoisomerase IV subunit B [Bordetella petrii] Length = 680 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 249/668 (37%), Positives = 352/668 (52%), Gaps = 39/668 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AGY I+V Sbjct: 29 ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 85 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L +G ++V D+GRGIPV HP+ +E++ T LHAGGKFD Y SGGLHG Sbjct: 86 TLHADGSVSVEDDGRGIPVGLHPE-EKAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 144 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG+SV NAL+ L V V R F G PL + R K GTR+ PDPK Sbjct: 145 VGVSVTNALATRLEVVVWRDGATSRLVFKGGDVAEPLAPYTEAGRKKSGTRVRVWPDPKY 204 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F L + +SKA L VK + +K K + + GL+ YL Sbjct: 205 FDS-PQIPPGELTHLLRSKAVLLPGVKVTLTNEKTGDTKT-------WQYEDGLRGYLAE 256 Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330 L L+ + + G + +W +AW E+ SY N I T GGTH Sbjct: 257 ALAGAELMVPFFEGQQYAGADHETFADGEGAQWVVAWTEDGNAVRESYVNLIPTPAGGTH 316 Query: 331 ESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR L +K +AEL + + ++ +D+ A +LS + +P+F GQ K +L S Sbjct: 317 ESGLREGLYGAVKGFAELHGLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 376 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 DA R V + D +L N KL E I +++ R R ++V ++ + L Sbjct: 377 RDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARAR--SAQKVEKRKSSGVAVL 434 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 435 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 494 Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I D+ A+G D LRY ++ I++DADVDG+HI LLLT FY+ L Sbjct: 495 NNEIHDIAVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPRL 554 Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 +E ++++ PPLFR+ QG + +Y D+ + ++ +K G +G ISRFK Sbjct: 555 VEAGNVYVAKPPLFRLDVPAQGKRPARKIYCLDQGELEAAQDKLRKEGVREGAWSISRFK 614 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677 GLGEM QL ET M+ + R LL V S DT + LMG ++ +R +I+E+ Sbjct: 615 GLGEMNPEQLWETTMNPDTRRLLPVGY--GSLSPDDTTRMFDMLMGKGESSQRRAWIEEK 672 Query: 678 ASFIDDVG 685 + + + Sbjct: 673 GNLAE-LD 679 >gi|153954762|ref|YP_001395527.1| DNA topoisomerase IV subunit B [Clostridium kluyveri DSM 555] gi|219855226|ref|YP_002472348.1| hypothetical protein CKR_1883 [Clostridium kluyveri NBRC 12016] gi|146347620|gb|EDK34156.1| GyrB2 [Clostridium kluyveri DSM 555] gi|219568950|dbj|BAH06934.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 649 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 216/662 (32%), Positives = 344/662 (51%), Gaps = 36/662 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S YD +S+ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ G+ + + Sbjct: 4 KISSVYDVNSLTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKVC 63 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L+ +G ++V+DNGRGIP HP K+ +E++ T+LH GGKF+N Y+ SGGLHGVG Sbjct: 64 VILNEDGSVSVIDNGRGIPTGTHP-VTKKNGVEMVFTSLHTGGKFNNDIYKTSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRI 207 +VVNALS + V V + I+ QKF G P++ LE + GT++ Sbjct: 123 GAVVNALSSWMEVEVKQNGHIYKQKFEYAYDSTLKKIMPGTPVTGLEIIGNT-DDTGTKV 181 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 TF PD K+F F + + + A+ + + EK + + E++ Sbjct: 182 TFMPDNKVFST-VDFKLDIIEERLKELAFQNKGITLKLI---HWEEKNKVEK--EYHSDR 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEIT-SYCNTILTD 325 GL +++ E+++ + E + E+ + E I + + SY N I T Sbjct: 236 GLLDFIEYLNESKTPLHKEPILFQGERSVEGIKMKGEVCIQFTDSTTYHIASYVNNIPTT 295 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 E GTHESG + +TR K++A+ ++ +DL I+ V I P F GQT Sbjct: 296 ESGTHESGFKTGMTRAFKEWAKKLNLIKEKDREFEGEDLREGMTAIVKVSINNPVFEGQT 355 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL + +A + ++ N A+ ++ + + R + +K + +K Sbjct: 356 KTKLGNSEAYTIMNELSYTKLSEWIEDNKNTASIIINNALHAAARREKIKKINDAEKKKI 415 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 L GK+A C+ + E +VEGDSAGGSAKQAR+R Q ++P +GKI+N Sbjct: 416 GKGAAPLAGKIAVCTLKDSSKCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 475 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 E + ++++ A+G Y E+DL+Y+K+II++DADVDG HI +L +T+ Y+ Sbjct: 476 KLENVLGSEELKIFNTAIGTGILKNYNEKDLKYDKIIILSDADVDGYHIRALWMTYIYRY 535 Query: 563 MYDLIEQKHLFLISPPLFRITQ---GTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 M +LI HL++ PPL+++ + G + YA+ + + E I R+K Sbjct: 536 MRELILNGHLYIALPPLYKVYKQVRGKEVVKYAYSDNQLLQAKREIGPKAL----IQRYK 591 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM QL +T ++ RTL ++ I+ + + ++ LMG R K++ + A Sbjct: 592 GLGEMNPDQLWDTTLNPESRTLQQITIDDVIK----AEKMVSLLMGDVVAPRKKYMYKHA 647 Query: 679 SF 680 F Sbjct: 648 EF 649 >gi|255320043|ref|ZP_05361239.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82] gi|262380549|ref|ZP_06073703.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SH164] gi|255302911|gb|EET82132.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SK82] gi|262297995|gb|EEY85910.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens SH164] Length = 626 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 262/646 (40%), Positives = 374/646 (57%), Gaps = 29/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN I V + Sbjct: 2 SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANQIAVKV 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISV Sbjct: 59 YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++ F G P++PLE E + GT + F P+ + D Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFEHGEPVAPLEVLEGKAPKRASGTTVRFWPE-TRYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L ++KA L+ +K + + EK E+ F GL YL +L+ Sbjct: 177 PKFALKALKHNLKAKAVLAAGLKINYIDE-------INNEKIEWQFENGLVDYLMDELQE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 R ++ F E + R + E+AI W E E SY N I T +GGTH +GLR Sbjct: 230 REIVPQPAFVATGEAE---RASAEFAICWNTEGGEQIQESYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 287 ITDALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASSIV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +N +D F +L QN A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 347 QNIAKDAFTLWLNQNSEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 405 AGLTREDSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLGSQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S +LRY KV I+ DAD DG HIA+LL F + L+E+ HLF+ Sbjct: 465 AIAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPALVEEGHLFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLFRI G YA DE+ + IL KK +I+RFKGLGEM ASQL+ET MD N Sbjct: 524 PPLFRIDDGKDVHYALDEDELEAIL---KKTKTKTPQITRFKGLGEMNASQLRETTMDPN 580 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R +++++ + D Sbjct: 581 TRRLVQLDLDDIQLTAGLLDKL---LAKKRSSDRKHWLEQKGNLAD 623 >gi|94471630|gb|ABF21081.1| DNA gyrase subunit B [Spiroplasma culicicola] Length = 606 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 235/622 (37%), Positives = 360/622 (57%), Gaps = 20/622 (3%) Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T++ LHH+ E++DNA+DE +AG+ + I + + + + DNGRGIPV+ HPK N Sbjct: 1 GNTNKNGLHHMIWEILDNAVDESLAGFCDEITIIMTEENEIIIKDNGRGIPVDLHPK-TN 59 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 KSTLE I T LHAGGKFD STY+ISGGLHGVG SVVNALS + ++R N ++ QKF Sbjct: 60 KSTLETIFTVLHAGGKFDESTYKISGGLHGVGASVVNALSLYVEAIISRDNVLYHQKFYD 119 Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 G + K+ + + G+ I F+PDP+IF + FD + + A+L+ +K Sbjct: 120 GGTKATELKEIGISDSTGSIIKFKPDPEIFKETIEFDFKVVQTKIKQLAFLNKGLKIELY 179 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 K + + F G+K Y++ + I+ EIF + VE ++ Sbjct: 180 DQK-------NDKFLSYRFDDGIKDYIKEINSGKEKINEEIFYI---NDTYEKIEVEVSV 229 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365 + + I S+CN I T EGG+HE G + ++ R + Y +N + + +D+ Sbjct: 230 QYNDTYDENIFSFCNNIFTSEGGSHEDGFKTSILRSLNTYTNELKNFKGNKFVFEDIKEG 289 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++S+ +P + GQTK KL + DA+ V N + + F +L++NP +A K+++ ++ Sbjct: 290 MCAVISIKHVDPLYEGQTKAKLSNPDAKDAVNNIVFESFKEFLLKNPNDAKKIIDKILIS 349 Query: 426 SEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R ++ RE RK+AI LPGKLADC A+ +E+++VEGDSAGGSAK RNR Sbjct: 350 QKARKAAQRAREDTRRKSAIDNFSLPGKLADCESKDANESEIYLVEGDSAGGSAKTGRNR 409 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+L L+GK+LNV K+ N +I ++ A+G ++ + +RY+K+IIMTDA Sbjct: 410 KTQAILSLKGKVLNVEKVKQSKVFENNEIQSIIAAIGTGVKNDFNIAKIRYKKIIIMTDA 469 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 DVDGAHI LLLTFFY+ M +LI ++++ PPL++I G K YA+ ++ +K+ E Sbjct: 470 DVDGAHIRVLLLTFFYRYMKELILNGNIYIAQPPLYKIDAGKNKVDYAYSDQELEKLKNE 529 Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 K+ K I R+KGLGEM QL ET MD +RT+L++++ + + LM Sbjct: 530 --KYKDTKYIIQRYKGLGEMDPIQLWETTMDPTRRTMLQIKVEDAFM----ANEVFSSLM 583 Query: 664 GTKADERFKFIQERASFIDDVG 685 G A+ R FI E A F++++ Sbjct: 584 GESAELRRNFITENAQFVENID 605 >gi|227113113|ref|ZP_03826769.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 805 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 221/574 (38%), Positives = 345/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+ +PL + N+ GT + F P + F + Sbjct: 121 SVVNALSEKLTLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + +++ GG+K ++ N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQYQIALALDG 564 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804 >gi|54020320|ref|YP_115550.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232] gi|53987493|gb|AAV27694.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 232] Length = 641 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 222/656 (33%), Positives = 350/656 (53%), Gaps = 35/656 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y +++L+GLE VR RPGMYIG TD+ LH L E+ DNA+DE IAG+AN I + ++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIP E H K K+ +E++ + LH+G KF Y+ +GGLHGVG SVV Sbjct: 62 SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++L V + R +F F G + K GT+I F PD +F + F Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLF-SHSEF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D+ ++ + +L +K + K EK F G++++++ ++ Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I ++ T K+ VE+ + + I S+ N + T+ GG+HE+G + + Sbjct: 233 IHDKVITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289 Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I Y + + I+ + +LS+ I E EF GQTK KL ++ A+ E Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455 + + N A+K++ +++E +R + + + + ++ K L GKL Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + A ELF+VEG+SAGGSAK ARNR QA+LPL+GKI+N + N++I+ Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG + ++L Y K+IIMTDAD DGAHI L+LTF + M LIE+ +++ Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529 Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI+ +G K +Y DEE +K ++ ++I R+KGLGEM A+QL +T MD Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684 +RTL +V I +++ LMG +AD R +I++ FI+++ Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636 >gi|297180059|gb|ADI16284.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b subunit [uncultured bacterium HF0010_16H03] Length = 633 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 240/647 (37%), Positives = 367/647 (56%), Gaps = 22/647 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A +YDA +I +L GL+PVR RPGMY TD +HL EV+DN++DE ++G+ + I++ Sbjct: 2 AKKSYDAQAIEVLSGLDPVRKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGHCSNIKI 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G + + DNGRG+PV+ HP+ N S +E+IL LHAG KF Y SGGLHGVG+ Sbjct: 59 NILKDGNIKISDNGRGMPVDIHPEH-NVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218 SVVNALS+ L V V R + + F G +S L++ +V GT I FRP+P ++ + Sbjct: 118 SVVNALSERLEVNVRRNSKEYQIIFENGHKVSELKEVGEVGIRNTGTSIIFRPNP-VYFE 176 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 L + ++KA L + ++ +K+ +K E++YF GLK+YL E Sbjct: 177 NIEVQIKALKHLLKAKAVLCPGLTLEFANEKKPKDK------EKWYFEDGLKSYLLESAE 230 Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 LI E E KG + W+ +N +Y N I T +GG+H +G + Sbjct: 231 GAELILDESIVCSKEGKGQELEFAINWS-QRLPKNKLDETYVNLIPTAQGGSHLNGFKSG 289 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 L IK++ + + + I +DD++ +A+ I+S ++ P+FAGQTK +L S D V Sbjct: 290 LLDSIKEFCDYRNLLPKGLKINADDVINNAIFIVSSKLQNPQFAGQTKERLDSKDHMSFV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + +D F +L + E K+ E + ++ R + E + + LPGKL+DC Sbjct: 350 SSVTKDTFSIWLNTHTEEGEKIAELAVISAQTRAKASNIIERKKT--FKGPALPGKLSDC 407 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN S +I +Q+I +L Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESSEIIKSQEIKNL 467 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + LRY K+ I+ DAD DG HIA+LL F + L+++ +++ Sbjct: 468 STAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKPLVQEGRIYISM 526 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK-KHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G +YA D+ ++K++ F+ K GK KI I RFKGLGEM SQL+ET MD Sbjct: 527 PPLYRIDCGKDVLYAVDDVQREKVISNFQNKKGKSKINIQRFKGLGEMNPSQLRETVMDP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ ++ N+ ++K A R ++++++ S Sbjct: 587 ETRLLVKLSLSSSDNANSMMDLLLSK---KNASARKEWLEKKGSLAK 630 >gi|229846657|ref|ZP_04466765.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1] gi|229810750|gb|EEP46468.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1] Length = 806 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 233/578 (40%), Positives = 353/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P +PL GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNT-ETTGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ AE + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNFGVSIRLIDKRDGAE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK RE+ R+ + LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|254494123|ref|ZP_05107294.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291] gi|226513163|gb|EEH62508.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291] Length = 661 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L V+V R + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSACVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + Sbjct: 650 MEREGDTA-QLD 660 >gi|295130602|ref|YP_003581265.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes SK137] gi|291375117|gb|ADD98971.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes SK137] Length = 698 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 234/703 (33%), Positives = 335/703 (47%), Gaps = 56/703 (7%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S S Y A ++ +LEGLE VR RP MYIG TD + L H E+ DN +DE +AGY Sbjct: 1 MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V+L+ G + V D GRGIPV+ P S LE++ T LHAGGKF Y +SGGL Sbjct: 61 RRITVTLEKAGSILVTDEGRGIPVDVEP-HTGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199 HGVG SVVNA+S L V V R++T++ F RG+P + + Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 R GTR+ + PD +IF A ++L + A+L ++ + ++ I + Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239 Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298 E F GG+ + + ++ + + G+T Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299 Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356 V+ A+ W S+ N I T +GGTH G L R K + Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412 I+ DD++ +++V + EP+F GQTK L + + R VE+ + + Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419 Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 A L+E V+ S R+ R + RK A+ LP KL DC + TELFIVEG Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+A ARN +QA+LP+RGKILNV A + N + ++Q +G + + + Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585 RY KVI M DAD DGAHI LL T F++ M ++E +F PPL R +G Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 K +Y + + Q+ + K G E R+KGLGEM ASQLKET MD RTL R+ + Sbjct: 600 DKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 + + + + LMG + R +FI E A +D + Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698 >gi|224369432|ref|YP_002603596.1| DNA topoisomerase IV subunit B [Desulfobacterium autotrophicum HRM2] gi|223692149|gb|ACN15432.1| ParE [Desulfobacterium autotrophicum HRM2] Length = 651 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 246/649 (37%), Positives = 362/649 (55%), Gaps = 32/649 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A SI +L+GL+PVR RPGMY TD + HL EVIDN++DE IAG+AN I+V L Sbjct: 17 YNADSIEVLKGLDPVRRRPGMY---TDTTSPDHLAHEVIDNSVDEAIAGFANRIDVVLHA 73 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + L V DNGRG+PV+ HP+ + +E+ILT LHAG KF N Y SGGLHGVG+SVVN Sbjct: 74 DNCLEVGDNGRGMPVDIHPE-EGVTGVELILTRLHAGAKFSNKDYNFSGGLHGVGVSVVN 132 Query: 164 ALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 ALS L V + R + F G PL+ ++ K N GT + F PD F Sbjct: 133 ALSSYLEVNIQRGGALHRITFKNGYRDQPLTLVKSIGK--NNSGTNLKFYPDASYFDRPN 190 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L + ++ EK E+ F GL+ YL L Sbjct: 191 -FSKKALKHALKAKAVLCPGLMITLFIEE-------TGEKHEWQFEFGLRDYLTEALAGC 242 Query: 281 SLISSEIFTGK-TEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 I FTG T ++ T V+W SY N I T GGTH +G R L Sbjct: 243 PTIFGSPFTGDITAEEATVAWAVDWTEERQAN--TCESYVNLIPTPLGGTHVNGFRSGLL 300 Query: 340 RGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I+++ + + +++ +D+ + ILSV + + +F+GQTK +L S V + Sbjct: 301 ESIREFCKFRDILPKGVNLAPEDIWENIAFILSVKLVDAQFSGQTKERLSSRHCTVIVNS 360 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 A++D F +L QN +L ++ + ERL+ K ++V RK LPGKL+DC+ Sbjct: 361 AVKDAFSLWLNQNTDFGERLANLAVDNARERLK--KAKKVTRKRITNGPALPGKLSDCTS 418 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 + +ELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S +I ++++I D+ Sbjct: 419 SDPEKSELFLVEGDSAGGSAKQARDRRFQAIMPLKGKILNTWDTDSSQILSSKEIHDISV 478 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S+ LRY K+ I+ DAD DG HIA+LL F++ +++ + H+F+ PP Sbjct: 479 AMGVDPDSEDI-SSLRYNKICILADADSDGLHIATLLCALFFRHFREVVRKGHIFMAMPP 537 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANK 637 LFRI G + YA D+ ++ I++ + K GKI + RFKGLGEM QL+ET + + Sbjct: 538 LFRIDVGKEVFYALDDPERESIIKRIQTKKKHGKINVQRFKGLGEMNPIQLRETTIAPDT 597 Query: 638 RTLLRVEINK--DLNSLKDTQ----DSINKLMGTK-ADERFKFIQERAS 679 R L+++ I+K +D + + ++ L+G K A +R ++I+ + + Sbjct: 598 RRLVQLVIDKEGADEDGQDAEKRVFEIMDMLLGKKRAPDRRRWIEAKGN 646 >gi|145594225|ref|YP_001158522.1| DNA topoisomerase type IIA subunit B region 2 domain-containing protein [Salinispora tropica CNB-440] gi|145303562|gb|ABP54144.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein [Salinispora tropica CNB-440] Length = 702 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 228/681 (33%), Positives = 342/681 (50%), Gaps = 52/681 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A + LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A IEV+L Sbjct: 26 YEADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHA 85 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIP + H K S +E++LT LHAGGKF S Y+ SGGLHGVG S VN Sbjct: 86 DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 144 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPL--------------EKKEKVRNK--RGTRI 207 ALS VTV R I + F G+P + + V+ + GT I Sbjct: 145 ALSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPQAPFAAGPGLQVIGAVKRQQRTGTSI 204 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 + DP+ F A DA + ++ A+L V P +E F++P Sbjct: 205 RYWYDPRYFEVGATLDADAVRMKLRNTAFLVPGVSYLLRD-----HTGAEPVEERFHYPN 259 Query: 268 GLKTYLQT---------------KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN 312 GL + E ++ G + R VE A W Sbjct: 260 GLTDMVDFLAPASDRPVSGTLLVCGEGAYRENAADANGVMQANVPRRAEVEVAFRWGTGY 319 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368 + NTI GGTH G ALTR + + T+ + DD++ Sbjct: 320 ERTVECFTNTIRNAHGGTHRKGFERALTRTLAEAIRNTRGLLKAKEDPPTLDDILEGLTA 379 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426 ++ V I EP+F QTK +L + + ++ + +L + EA +L+ + + + Sbjct: 380 VVHVRIPEPQFTSQTKDELSTAGITKVLQRLVEQHLKAWLEERKTKTEARTVLQKIADAA 439 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 RL +++Q+E RKTA+ +P KL DC +E+FIVEGDSA G+A+ AR+ Sbjct: 440 RVRLTQKQQKEAARRKTALEGASMPAKLVDCRSTGVERSEMFIVEGDSALGTARLARSSE 499 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LP+RGKILNV A +++ +N + +VQ LG + + +RY +V+IM DAD Sbjct: 500 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADAD 559 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT---KSVYAHDEEHKQKILE 602 VDGAHI +LL+T F + M LIE L+ PPL +IT +++Y + +E + + Sbjct: 560 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTKGRRPQTIYTYTQEEMEATVR 619 Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 ++ GK + I RFKGLGEM A +L ET M+ R + R+ + ++ + + Sbjct: 620 RLEQAGKQIVTPIPRFKGLGEMDADELWETTMNPAGRAVRRITMED----AEEAERILEL 675 Query: 662 LMGTKADERFKFIQERASFID 682 LMG K + R ++ A +D Sbjct: 676 LMGEKVEPRRNWLIASADRVD 696 >gi|315093331|gb|EFT65307.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1] Length = 719 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 340/720 (47%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S + S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGEGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P+ S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + +RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQVRYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|261819374|ref|YP_003257480.1| DNA gyrase subunit B [Pectobacterium wasabiae WPP163] gi|261603387|gb|ACX85873.1| DNA gyrase, B subunit [Pectobacterium wasabiae WPP163] Length = 805 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 220/566 (38%), Positives = 344/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R + Q + G+ +PL + N+ GT + F P + F + Sbjct: 121 SVVNALSEKLKLVIHRDGKLHEQIYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + +++ GG+K ++ N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLIDEREKD------KADHYHYDGGIKAFVDYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F T K VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPNVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + YL++NP +A ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESLMNEKLVDYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY+++ +++E+ H+++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET MD R +LRV + + Sbjct: 720 FEQALEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAI----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 776 ELFTTLMGDAVEPRRAFIEENALKAMNID 804 >gi|314923406|gb|EFS87237.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1] gi|314966753|gb|EFT10852.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2] gi|314981087|gb|EFT25181.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3] gi|315091912|gb|EFT63888.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4] gi|315103413|gb|EFT75389.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2] gi|327327578|gb|EGE69354.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1] Length = 719 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 235/720 (32%), Positives = 339/720 (47%), Gaps = 56/720 (7%) Query: 18 GSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHL 77 +S + S S Y A ++ +LEGLE VR RP MYIG TD + L H Sbjct: 5 STSSANSSETPRGEGDTVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHC 64 Query: 78 FSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTL 137 E+ DN +DE +AGY I V+L+ G + V D GRGIPV+ P+ S LE++ T L Sbjct: 65 LWEIFDNGVDEALAGYGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKL 123 Query: 138 HAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-------- 189 HAGGKF Y +SGGLHGVG SVVNA+S L V V R++T++ F RG+P Sbjct: 124 HAGGKFGGGAYNVSGGLHGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGP 183 Query: 190 -------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 + + R GTR+ + PD +IF A ++L + A+L ++ Sbjct: 184 DAPFTPGSGVRKVGKAKRGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLE 243 Query: 243 TCWSCDKEIAEKYGIPEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE---- 293 + ++ I + E F GG+ + + ++ + + G+T Sbjct: 244 IVITDERGIQTDPETGDVLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTET 303 Query: 294 ------------KKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 V+ A+ W S+ N I T +GGTH G L R Sbjct: 304 VPMLDENGGMTPTDVDRDLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLR 363 Query: 341 GIKK-YAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RT 395 K + I+ DD++ +++V + EP+F GQTK L + + R Sbjct: 364 AFSAGLEGTRILKSSEEIVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARI 423 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE+ + + A L+E V+ S R+ R + RK A+ LP KL Sbjct: 424 VEDKMTAFLTSAKAADKPVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLK 483 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + TELFIVEGDSA G+A ARN +QA+LP+RGKILNV A + N + Sbjct: 484 DCRSSDPDVTELFIVEGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECA 543 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++Q +G + + + RY KVI M DAD DGAHI LL T F++ M ++E +F Sbjct: 544 SIIQVVGAGSGKTFDLDQARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFS 603 Query: 575 ISPPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 PPL R +G K +Y + + Q+ + K G E R+KGLGEM ASQL Sbjct: 604 AVPPLHRFELINPKRGMDKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQL 663 Query: 629 KETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 KET MD RTL R+ ++ + + + LMG + R +FI E A +D + Sbjct: 664 KETTMDPRHRTLRRITVDD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|261380858|ref|ZP_05985431.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703] gi|284796328|gb|EFC51675.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703] Length = 661 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ + FS G + L + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFSGGNVIESLTEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGENETYTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDYGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 +++ + + Sbjct: 650 MEKEGDTAE-LD 660 >gi|71893389|ref|YP_278835.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J] gi|71851516|gb|AAZ44124.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae J] Length = 642 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 222/656 (33%), Positives = 349/656 (53%), Gaps = 35/656 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y +++L+GLE VR RPGMYIG TD+ LH L E+ DNA+DE IAG+AN I + ++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIP E H K K+ +E++ + LH+G KF Y+ +GGLHGVG SVV Sbjct: 62 SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++L V + R +F F G + K GT+I F PD +F + F Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSATTGTKIRFWPDFSLF-SHSEF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D+ ++ + +L +K + K EK F G++++++ ++ Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I ++ T K+ VE+ + + I S+ N + T+ GG+HE+G + + Sbjct: 233 IHDKVITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289 Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I Y + + I+ + +LS+ I E EF GQTK KL ++ A+ E Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455 + + N A+K++ +++E +R + + + + ++ K L GKL Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + A ELF+VEG+SAGGSAK ARNR QA+LPL+GKI+N + N++I+ Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG + ++L Y K+IIMTDAD DGAHI L+LTF + M LIE+ +++ Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529 Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI+ +G K +Y DEE +K ++ ++I R+KGLGEM A+QL +T MD Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684 +RTL +V I + + LMG +AD R +I++ FI+++ Sbjct: 585 PERRTLEKVLIENYPK----VEKNFQILMGERADLRKSWIEKNVNFSLEDKFIENL 636 >gi|238898809|ref|YP_002924491.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466569|gb|ACQ68343.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 804 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 347/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLAGYCKKITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 IIHEDNSVSVEDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T++R+ +I Q + G P +PL+ K GTR+ F P K F ++ Sbjct: 121 SVVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKT-ELTGTRVRFWPSLKTFTNQ 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V C + EK F++ GG++ ++ +N Sbjct: 180 TEFQYDILAKRLRELSFLNSGVFICLEDKRNDQEK-------HFHYEGGIQAFVTYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KTPIHPKVFYFSTVKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAM 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y E K I+ DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTMNSYMEKEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++++ Sbjct: 410 CQERDPALSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASEEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDAD+DG+HI +LLLTFFY++M +LIE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADIDGSHIRTLLLTFFYRQMPELIERGHIFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ +K G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMEKYQMSLALEG 563 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 719 FEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWETTMDPETRRMLQVRIKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRNFIEENALKAANID 803 >gi|317403447|gb|EFV83958.1| topoisomerase IV subunit B [Achromobacter xylosoxidans C54] Length = 653 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 248/671 (36%), Positives = 352/671 (52%), Gaps = 45/671 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y+ +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AG+ I V Sbjct: 2 ATPRYNEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGHGKQILV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L +G ++V D+GRGIPV HP+ N +E++ T LHAGGKFD Y SGGLHG Sbjct: 59 TLHIDGSVSVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213 VG+SV NAL+ L V V R + F G PL+P ++ R K GTR+ PD Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGG--RKKSGTRVRVWPDA 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L + +SKA L VK +K K + + GL+ YL Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKT-------WQYQDGLRGYL 227 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDEG 327 L L+ F G+ H E A + N SY N I T G Sbjct: 228 SEALAGAELMVP-FFEGQQYADADHETFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAG 286 Query: 328 GTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K + Sbjct: 287 GTHESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKER 346 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L S DA R V + D +L N KL E I +++ R R ++V ++ + Sbjct: 347 LNSRDAVRLVGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGV 404 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN ++ Sbjct: 405 AVLPGKLTDCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDR 464 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY ++ I++DADVDG+HI LLLT FY+ Sbjct: 465 LFANNEIHDISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHF 524 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 L+E H+++ PPLFR+ QG + +Y DE + ++ +K G + +S Sbjct: 525 PKLVEAGHVYVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGSRESSWAVS 584 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM QL ET M+ + R LL V + +DT + LMG ++ +R +I Sbjct: 585 RFKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--QTPEDTTRMFDMLMGKGESSQRRAWI 642 Query: 675 QERASFIDDVG 685 +E+ + + + Sbjct: 643 EEKGNLAE-LD 652 >gi|12045055|ref|NP_072865.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37] gi|1352716|sp|P47445|PARE_MYCGE RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|3844801|gb|AAC71421.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37] gi|166078913|gb|ABY79531.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 633 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 234/653 (35%), Positives = 363/653 (55%), Gaps = 33/653 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY A++I+IL+GL+ V+ RPGMYIG TD K LHH+ E++ N++DEV+AGYA I V+L Sbjct: 3 SNYSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITVTL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 D N +TV D+GRGIP E H + N ST++ + T LHAGGKFD+ +Y+++GGLHGVG SV Sbjct: 63 DLNNTITVSDDGRGIPYEIH-QDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALSD L VTV R I+ + G + KK GT ++F DPK+F A Sbjct: 122 VNALSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTTSHGTTVSFHADPKVFKK-AQ 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD+ + + ++L ++K ++ K + F+ GL +L Sbjct: 181 FDSNIIKSRLKELSFLFAKLKLTFTDQK-------TNKTTVFFSTSGLVQFLDEINNTVE 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + K EK G VE + + + I S+ N+I T EGG+HE+G +A++ Sbjct: 234 TLG-QKTLIKGEKDGI---EVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISD 289 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPE--FAGQTKTKLVSLDAQRTV 396 I Y ++ + ++ I+ V + E F GQTK+KL S + + V Sbjct: 290 VINSYCRKYNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--RKLRLPGKLA 454 ++ + +L +N +A +++ ++ + + + ++QRE+ + + ++ L GKLA Sbjct: 350 YELVQQHYFQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQI 513 C ELFIVEGDSAGG+AK R+R QA+LPLRGK+LNV ++K N++I Sbjct: 410 PCQTKKTSEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEI 469 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + L+ +G + + +DL+Y K+IIMTDAD DGAHI LLLTFFY+ M LIE H++ Sbjct: 470 LTLIFCIGTGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVY 529 Query: 574 LISPPLFRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 L PPL+++ Y + + + + + R+KGLGEM A QL +T Sbjct: 530 LALPPLYKLETKDRKTVKYLWSDLELESVKLKLNN-----FTLQRYKGLGEMNADQLWDT 584 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF-IDD 683 M+ R L++V+++ +N+ K N MG K+D R +I+ +F +++ Sbjct: 585 TMNPTTRKLVQVKLDDLINAEKQI----NIFMGEKSDLRKHWIEANINFSVEN 633 >gi|50842524|ref|YP_055751.1| DNA topoisomerase IV subunit B [Propionibacterium acnes KPA171202] gi|289425254|ref|ZP_06427031.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes SK187] gi|289427186|ref|ZP_06428902.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes J165] gi|50840126|gb|AAT82793.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202] gi|289154232|gb|EFD02920.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes SK187] gi|289159655|gb|EFD07843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes J165] Length = 698 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 234/703 (33%), Positives = 336/703 (47%), Gaps = 56/703 (7%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S S Y A ++ +LEGLE VR RP MYIG TD + L H E+ DN +DE +AGY Sbjct: 1 MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V+L+ G + V D GRGIPV+ P+ S LE++ T LHAGGKF Y +SGGL Sbjct: 61 RRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199 HGVG SVVNA+S L V V R++T++ F RG+P + + Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 R GTR+ + PD +IF A ++L + A+L ++ + ++ I + Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239 Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298 E F GG+ + + ++ + + G+T Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299 Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356 V+ A+ W S+ N I T +GGTH G L R K + Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412 I+ DD++ +++V + EP+F GQTK L + + R VE+ + + Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419 Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 A L+E V+ S R+ R + RK A+ LP KL DC + TELFIVEG Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+A ARN +QA+LP+RGKILNV A + N + ++Q +G + + + Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585 RY KVI M DAD DGAHI LL T F++ M ++E +F PPL R +G Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 K +Y + + Q+ + K G E R+KGLGEM ASQLKET MD RTL R+ + Sbjct: 600 DKYLYTYTDAEYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 + + + + LMG + R +FI E A +D + Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698 >gi|293604498|ref|ZP_06686903.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii ATCC 43553] gi|292817079|gb|EFF76155.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter piechaudii ATCC 43553] Length = 653 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 249/670 (37%), Positives = 354/670 (52%), Gaps = 43/670 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AGY I+V Sbjct: 2 ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L +G ++V D+GRGIPV HP+ +E++ T LHAGGKFD Y SGGLHG Sbjct: 59 TLHSDGSVSVEDDGRGIPVGLHPE-EGAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213 VG+SV NAL+ L V V R + F G PL+P E R K GTR+ PD Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYEAGG--RKKSGTRVRVWPDA 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L + +SKA L VK +K K + + GL+ YL Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVTLVNEKTGDTKT-------WQYQDGLRGYL 227 Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328 L L+ + + G + +W +AW E+ SY N I T GG Sbjct: 228 AEALTGAELMVPFFEGQQYAGADHENFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGG 287 Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 THESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K +L Sbjct: 288 THESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERL 347 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 S DA R V + D +L N KL E I +++ R R ++V ++ + Sbjct: 348 NSRDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVA 405 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 406 VLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRL 465 Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I D+ A+G D LRY ++ I++DADVDG+HI LLLT FY+ Sbjct: 466 FANNEIHDISVAIGVDPHGPNDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFP 525 Query: 565 DLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 L+E ++F+ PPLFR+ QG + +Y DE + ++ +K G +G +SR Sbjct: 526 KLVEAGNVFVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGVREGAWAVSR 585 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM QL ET M+ + R LL V + +DT + LMG ++ +R +I+ Sbjct: 586 FKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--QTPEDTTRMFDMLMGKGESSQRRAWIE 643 Query: 676 ERASFIDDVG 685 E+ + + + Sbjct: 644 EKGNLAE-LD 652 >gi|237748747|ref|ZP_04579227.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13] gi|229380109|gb|EEO30200.1| topoisomerase IV subunit B [Oxalobacter formigenes OXCC13] Length = 659 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 250/669 (37%), Positives = 365/669 (54%), Gaps = 42/669 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y +SI++L+GLEPVR RPGMY T + H+ +EVIDNA DE I GY I V Sbjct: 4 KETSYSEASIKVLKGLEPVRQRPGMY---TRTENPLHIITEVIDNASDEAIGGYCKNINV 60 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGGLHG 156 +L+ +G ++V D+GRGIPV HP+ T+EI+ T LH+GGKF ++ Y SGGLHG Sbjct: 61 TLNADGSVSVEDDGRGIPVGMHPE-EKVPTVEIVFTRLHSGGKFTKGGDNAYAFSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPK 214 VG+SV NALS + VTV R+ + F+ G PL + R K GT++T PD Sbjct: 120 VGVSVTNALSKRIEVTVWREKEVHQIAFTDGEVTEPLTSRPIARGEKKSGTKVTVWPDA- 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 + D A L + +SKA L V +K E E +++ GL+ YL Sbjct: 179 RYFDSMTIPLAELKHLLRSKAILLPGVHVELQNEK-------TNETETWHYENGLRGYLS 231 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGT-------VEWAIAWCEENP-EITSYCNTILTDE 326 +LE + I + E H W +AW E P S+ N I T Sbjct: 232 QELELTTGEEIVIPLFEGELYADHDNEGFASGEGAAWVVAWTTEGPLIRESFVNLIPTTA 291 Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTHESGLR L +K + E + + + ++ +D+ +LS + +P+F GQ K Sbjct: 292 GGTHESGLRDGLFNAVKSFTEIHSLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQIKE 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L S DA R V + ++ F+ +L QN KL E VI++++ R+R+ ++ E + +A+ Sbjct: 352 RLNSRDAVRLVSHFVKPAFETWLHQNVEYGRKLAELVIKQAQSRMRQLQKVEKKKSSAVA 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN + Sbjct: 412 VL--PGKLTDCESHDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETEKD 469 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++ NQ+I D+ A+G + + D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 RLFANQEIHDISVAIGVDPHTPADDPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRH 529 Query: 563 MYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG--KIEI 614 LIE ++ + PPL+RI +G K +YA D+ ILE+ K G + I Sbjct: 530 FPKLIENGNICVARPPLYRIDAPARGKKPMQKLYALDDSELNGILEKLKSEGIKDNALGI 589 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM A QL ET ++ + R LL + + S ++++ LMG +A R + Sbjct: 590 SRFKGLGEMNAEQLWETTLNPDTRRLLPITF--GIFSRNESEERFQMLMGKGEAAARRNW 647 Query: 674 IQERASFID 682 ++E + + Sbjct: 648 MEEHGNEAE 656 >gi|194099098|ref|YP_002002183.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945] gi|239999404|ref|ZP_04719328.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02] gi|240014581|ref|ZP_04721494.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI18] gi|240017026|ref|ZP_04723566.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA6140] gi|240081338|ref|ZP_04725881.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19] gi|240113547|ref|ZP_04728037.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae MS11] gi|240118387|ref|ZP_04732449.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID1] gi|240121103|ref|ZP_04734065.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID24-1] gi|240123932|ref|ZP_04736888.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID332] gi|240126132|ref|ZP_04739018.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679] gi|240128609|ref|ZP_04741270.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035] gi|268595224|ref|ZP_06129391.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02] gi|268597440|ref|ZP_06131607.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19] gi|268599612|ref|ZP_06133779.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11] gi|268604099|ref|ZP_06138266.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1] gi|268682557|ref|ZP_06149419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332] gi|268684718|ref|ZP_06151580.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679] gi|268686997|ref|ZP_06153859.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035] gi|293398679|ref|ZP_06642857.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62] gi|193934388|gb|ACF30212.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945] gi|268548613|gb|EEZ44031.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02] gi|268551228|gb|EEZ46247.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19] gi|268583743|gb|EEZ48419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11] gi|268588230|gb|EEZ52906.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1] gi|268622841|gb|EEZ55241.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332] gi|268625002|gb|EEZ57402.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679] gi|268627281|gb|EEZ59681.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035] gi|291611150|gb|EFF40247.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62] gi|317164652|gb|ADV08193.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae TCDC-NG08107] Length = 661 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L V+V R + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + Sbjct: 650 MEREGDTA-QLD 660 >gi|77165746|ref|YP_344271.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707] gi|254433384|ref|ZP_05046892.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27] gi|76884060|gb|ABA58741.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707] gi|207089717|gb|EDZ66988.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27] Length = 628 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 249/624 (39%), Positives = 354/624 (56%), Gaps = 23/624 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S NYDA++I +L GL+PVR RPGMY TD + +HL EVIDN++DE IAG+A I+V Sbjct: 2 SGNYDAAAIEVLTGLDPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATQIDVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G LTV D+GRG+PV+ HP+ +E+ILT LHAGGKF + +Y +GGLHGVG+S Sbjct: 59 LQPDGSLTVCDDGRGMPVDLHPE-ERLPGVEVILTRLHAGGKFSSKSYRFAGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V V R+ + F+ G +S L+ KV + GT + F PDP +F D Sbjct: 118 VVNALSSRLEVWVRREGCEYHIAFANGERVSALKAINKVGKRNTGTVLRFWPDP-VFFDT 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ARL + ++KA L + +S E + + GL YL+ +L Sbjct: 177 PKFAVARLKHILRAKAVLCPGLCVTFSD-------VATGETVNWRYQEGLLAYLRDELRE 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 S + FTG+ + V WA W E E SY N I T +GGTH +GLR Sbjct: 230 LSYLPDPPFTGEMQGNTE---EVCWAFTWLPEGGEVVTESYVNLIPTPQGGTHVNGLRAG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + ++++ E + + + DD+ +LSV + +P+F+GQTK +L S + V Sbjct: 287 MLEAVREFCEFRNLLPKGVKLAPDDVWDRVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ + + E I ++ RLR + ++V RK LPGKLADC Sbjct: 347 SGVVKDSFSLWLNQHVVTGETIAELAIGNAQRRLR--QAKKVVRKRIQAGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQ R+R QA++PLRGKILN S ++ +Q++ ++ Sbjct: 405 TSQEVSLTELFLVEGDSAGGSAKQGRDRVFQAIMPLRGKILNTWEIDSAQVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S + LRY K+ I+ DAD DGAHIA+LL F++ L+E H+++ Sbjct: 465 AVALGVDPGSDKL-DSLRYGKICILADADSDGAHIAALLSALFFRHFRPLVEAGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DE +Q +L+ KGKI I RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKRVFYALDEAERQGVLDRIAAERIKGKINIQRFKGLGEMNPMQLRETTMAP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSI 659 R L+R+ + + + + + Sbjct: 584 ETRRLVRLTVTPNDDPDQLLDRLL 607 >gi|72080376|ref|YP_287434.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448] gi|71913500|gb|AAZ53411.1| topoisomerase IV subunit B [Mycoplasma hyopneumoniae 7448] Length = 642 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 223/656 (33%), Positives = 349/656 (53%), Gaps = 35/656 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y +++L GLE VR RPGMYIG TD+ LH L E+ DNA+DE IAG+AN I + ++ Sbjct: 2 TYSVEKLKLLRGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + + + DNGRGIP E H K K+ +E++ + LH+G KF Y+ +GGLHGVG SVV Sbjct: 62 SDNSIEISDNGRGIPTEIHKK-TGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVV 120 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++L V + R +F F G + K GT+I F PD +F + F Sbjct: 121 NALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSTTTGTKIRFWPDFSLF-SHSEF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 D+ ++ + +L +K + K EK F G++++++ ++ Sbjct: 180 DSEMIISRLRETCFLVNNLKINFFDTKNNIEKK-------FLCERGIESFIEFLNNDQEK 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I +I T K+ VE+ + + I S+ N + T+ GG+HE+G + + Sbjct: 233 IHDKIITF---KEKMQEIIVEFGFQYVNSQQENIISFVNNVKTNLGGSHENGFKSGFLKA 289 Query: 342 IKKYAELTQNKRAISIISDDL-MISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVEN 398 I Y + + I+ + +LS+ I E EF GQTK KL ++ A+ E Sbjct: 290 INTYGQQNNLLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEE 349 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR---KQREVNRKTAIRKLRLPGKLAD 455 + + N A+K++ +++E +R + + + + ++ K L GKL Sbjct: 350 VIFTNLMTFFALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTP 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 + A ELF+VEG+SAGGSAK ARNR QA+LPL+GKI+N + N++I+ Sbjct: 410 ANSKKAMNRELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIA 469 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 ++ ALG + ++L Y K+IIMTDAD DGAHI L+LTF + M LIE+ +++ Sbjct: 470 IISALGTGIGQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIA 529 Query: 576 SPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMD 634 PPL+RI+ +G K +Y DEE +K ++ ++I R+KGLGEM A+QL +T MD Sbjct: 530 QPPLYRISEKGRKDIYIWDEEKFEKYIK-----NSTNLQIQRYKGLGEMNANQLWQTTMD 584 Query: 635 ANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA------SFIDDV 684 +RTL +V I +++ LMG +AD R +I++ FI+++ Sbjct: 585 PERRTLEKVLIENYPK----VEENFQILMGERADLRKSWIEKNVDFSLEDKFIENL 636 >gi|308047726|ref|YP_003911292.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799] gi|307629916|gb|ADN74218.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799] Length = 805 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 230/575 (40%), Positives = 352/575 (61%), Gaps = 18/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 A ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ HP+ S ++I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHADGSVSVQDDGRGIPVDMHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD+L +TV RQ I Q++S G P++PL+ +K GT I F P +IF D Sbjct: 121 VSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTGTTIRFWPSSQIFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ E + + + GG+ +++ + Sbjct: 180 TT-FHYDILAKRLRELSFLNSGVSIRLVDERDAKE-------DHYCYEGGIHAFVEFLNQ 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ + ++F E++ VE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVHQQVFHFTIERED--GIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRTLNNYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + +L++NP +A ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEQLQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+GC R +Y + RY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ +++ Sbjct: 470 TLITAMGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE + L Sbjct: 530 IAQPPLYKVKKGKQERYIKDEAALTEYLTSLALDN 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +K L K + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 720 FEKGLTWLMNESKRGLYIQRYKGLGEMNPDQLWETTMDPETRRMLRVTIEDAIG----AD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 776 QLFTTLMGDQVEPRRDFIEKNALLVANLD 804 >gi|59801683|ref|YP_208395.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA 1090] gi|59718578|gb|AAW89983.1| putative DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA 1090] Length = 661 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L V+V R + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAVGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + Sbjct: 650 MEREGDTA-QLD 660 >gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886] gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886] Length = 805 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 352/566 (62%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V D+GRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDGSVSVKDDGRGIPVDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R + Q + G+P PLE ++ GTRI F P + F D Sbjct: 121 SVVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDT-DETGTRIRFWPSDETFSDT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ +++ N Sbjct: 180 T-FHYDILAKRLRELSFLNSGVSIKLIDERE------ENKHDHFMYEGGIRAFVEHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F + E++ +VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHPTVFHFEHERED--GVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP ++ + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLAEFLIENPQDSKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E ++ Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMEQY 556 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + L K + R+KGLGEM QL ET MD R ++ Sbjct: 708 IQRGERKQPVKS---FADALAWLIKESNRGLTRQRYKGLGEMNPDQLWETTMDPESRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I + + LMG + R FI++ A + ++ Sbjct: 765 RVTIQDAV----AADELFTTLMGDHVEPRRAFIEDNALKVANLD 804 >gi|325144924|gb|EGC67208.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240013] gi|325205601|gb|ADZ01054.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M04-240196] Length = 661 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|262377153|ref|ZP_06070378.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145] gi|262307891|gb|EEY89029.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145] Length = 626 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 256/646 (39%), Positives = 375/646 (58%), Gaps = 29/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN I V++ Sbjct: 2 SQYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHANKITVTV 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V DNGRG+PV+ HP++ +S +EII+T LHAGGKF Y+ SGGLHGVGISV Sbjct: 59 YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIIMTKLHAGGKFSTDNYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++ F G P++PLE + + GT + F P+ K F Sbjct: 118 VNALSTRVEVEVQRQGNLYKMAFENGEPVAPLEVLAGKAPKRVSGTTVQFWPEAKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L ++KA L+ ++ + EK + F GL YL +LE+ Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQINYVDQ-------INDEKITWQFENGLVDYLMDELED 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 R +I + F + + R + E+AI W E E SY N I T +GGTH +GLR Sbjct: 230 REIIPAPAFVATGDAE---RASAEFAICWNVEGGESVQESYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 287 VTDAMREFCELRNLLPRNMKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAAGIV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +N +D F +L QN A +L E I ++ RL+ ++V RK + LPGKL+DC Sbjct: 347 QNIAKDAFALWLNQNSDIAMQLAEMAISKAGRRLK--AAKKVERKKIVAGPTLPGKLSDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ ++ Sbjct: 405 VGHDLDQSELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S +LRY KV I+ DAD DG HIA+LL F + L+E+ HLF+ Sbjct: 465 AIAIGVDPGSDDL-SELRYGKVCILADADSDGLHIATLLCALFVKHFPTLVEEGHLFVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPLFRI YA DE+ IL++ K +I+RFKGLGEM ASQL+ET +D N Sbjct: 524 PPLFRIDDNKDVHYALDEDELNSILKKCK---TKNPQITRFKGLGEMNASQLRETTLDPN 580 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ ++ L +A +R +++++ + D Sbjct: 581 TRRLVQLDLDDAHHTAGLLDKL---LAKKRASDRKDWLEQKGNLAD 623 >gi|325201661|gb|ADY97115.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240149] gi|325208604|gb|ADZ04056.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis NZ-05/33] Length = 661 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|325136669|gb|EGC59269.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M0579] Length = 661 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVAGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|225076315|ref|ZP_03719514.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens NRL30031/H210] gi|224952439|gb|EEG33648.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens NRL30031/H210] Length = 661 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHR-----GTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G DL RY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVANGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 +++ + + Sbjct: 650 MEKEGDTAE-LD 660 >gi|194365224|ref|YP_002027834.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia R551-3] gi|194348028|gb|ACF51151.1| DNA topoisomerase IV, B subunit [Stenotrophomonas maltophilia R551-3] Length = 629 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 244/642 (38%), Positives = 363/642 (56%), Gaps = 25/642 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y+A+ I +L GL+PV+ RPGMY TD +HL EVIDN++DE +AG+A IE++L Sbjct: 5 YNAADIEVLSGLDPVKRRPGMY---TDTARPNHLAQEVIDNSVDEALAGHARSIEITLFK 61 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRG+PV+ HP+ +E+ILT LHAGGKF+N+ Y SGGLHGVG+SVVN Sbjct: 62 DGSVEVSDDGRGMPVDIHPE-EKIPGVELILTRLHAGGKFNNNNYTFSGGLHGVGVSVVN 120 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222 ALS + + + R+ F G SPLE V + GTR+ F PDPK F F Sbjct: 121 ALSTLVEIHIKREGAEHRITFRNGDRASPLEVVGSVGKKNTGTRLRFWPDPKYFDTP-KF 179 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++KA L + + + + + +Y+ GL+ YL+ +L +R Sbjct: 180 AVRALKHLLRAKAVLCPGLTVKLTDE-------ATGDVDTWYYEDGLRDYLKLELGDRES 232 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRG 341 + +++F G +K V+WA+AW E SY N I T + GTH +GLR LT Sbjct: 233 LPADLFVGNLKKDTEI---VDWAVAWLPEGELVQESYVNLIPTAQHGTHANGLRTGLTEA 289 Query: 342 IKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + R + + +D+ +LS+ + +P+F+GQTK +L S A VE A Sbjct: 290 LREFCDFRNLLPRGVKLAPEDVWDRVSFVLSLKMTDPQFSGQTKERLSSRQAAGFVEGAA 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F L QN K+ + IER+ RL+ ++ V RK + LPGKLADC Sbjct: 350 HDAFSLLLNQNVELGEKIAQIAIERASARLK--TEKLVVRKKVTQGPALPGKLADCISQD 407 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR++ QA+LPLRGKILN S + ++++ +L A+ Sbjct: 408 LSRTELFLVEGDSAGGSAKQARDKDFQAILPLRGKILNTWEVSSNSVLASEEVHNLAVAI 467 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 GC LRY KVII+ DAD DG HIA+LL F + L++ H+F+ PPLF Sbjct: 468 GCDPGKDDI-SGLRYGKVIILADADSDGLHIATLLTALFLKHFPALVDAGHVFVAMPPLF 526 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 RI G + YA DEE K+ +L++ ++ KG + ++RFKGLGEM QL+E+ + + R Sbjct: 527 RIDVGKQVFYALDEEEKRSMLDKIEREKIKGAVNVTRFKGLGEMNPPQLRESTIHPDTRR 586 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 L+++ ++ + L +A +R +++ + Sbjct: 587 LVQLTVDDREQTSSLMDML---LAKKRASDRKGWLETKGDLA 625 >gi|28896788|ref|NP_796393.1| DNA gyrase subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|153839074|ref|ZP_01991741.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810] gi|260363487|ref|ZP_05776320.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030] gi|260876546|ref|ZP_05888901.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034] gi|260897307|ref|ZP_05905803.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466] gi|260901413|ref|ZP_05909808.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037] gi|29611941|sp|O51859|GYRB_VIBPA RecName: Full=DNA gyrase subunit B gi|28804996|dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|149747457|gb|EDM58411.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810] gi|308087831|gb|EFO37526.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466] gi|308090372|gb|EFO40067.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034] gi|308107191|gb|EFO44731.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037] gi|308113561|gb|EFO51101.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030] gi|328471241|gb|EGF42143.1| DNA gyrase subunit B [Vibrio parahaemolyticus 10329] Length = 805 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 232/566 (40%), Positives = 350/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL +K GT+I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +++ F + GG++ ++Q N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREAD------KQDHFMYEGGIQAFVQHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDLERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV+NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DEE + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G +++ + LE K + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTLPVSS---FAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRHFIEENALKVANLD 804 >gi|323493784|ref|ZP_08098902.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546] gi|323311918|gb|EGA65064.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546] Length = 805 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 231/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL +K GT+I F P + F + Sbjct: 121 SVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQIRFWPSAETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV+NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 LE K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 DALEWLIKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|260431693|ref|ZP_05785664.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415521|gb|EEX08780.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 805 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 226/573 (39%), Positives = 334/573 (58%), Gaps = 16/573 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + A+ Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEDAQANQEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVTVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG + L+ + ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ ++ GG+K ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILVDERPAERLETE-----LFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ E K E+ VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKTPAMPEPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRAALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP EA ++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPAVEGMVNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TELF+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ + Sbjct: 412 AGKLKDCSEKDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPL+++++G VY D+ L Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDDYL 564 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 722 DLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|261378873|ref|ZP_05983446.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685] gi|269144688|gb|EEZ71106.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685] Length = 661 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLTEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSISELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFIKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + Sbjct: 650 MEREGDTA-QLD 660 >gi|315635217|ref|ZP_07890494.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter segnis ATCC 33393] gi|315475963|gb|EFU66718.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter segnis ATCC 33393] Length = 806 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 229/570 (40%), Positives = 351/570 (61%), Gaps = 19/570 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + + Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + Sbjct: 2 STTTPETYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q +S G P +PL + + GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V ++ +++ F++ GG++ +++ Sbjct: 180 FTNI-EFEYDILAKRLRELSFLNSGVSIRLIDER-------TDKQDHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ I + F EK G VE A+ W + I + N I +GGTH +G Sbjct: 232 INRGKTPIHPKPFYFSAEKDGI---GVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR + Y E K ++ DD V ++SV + +P+F+ QTK KLVS + Sbjct: 289 RGAMTRTLNNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + +VE+ + + YL++NP + ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSSVESLMNEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 ++++ PPL+++ +G + Y D+E + Sbjct: 529 YVYIAQPPLYKVKKGKQEQYIKDDEAMAEF 558 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + I R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNTRRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A ++ Sbjct: 778 QLFTTLMGDEVEPRREFIESNALRA-NLD 805 >gi|89074699|ref|ZP_01161157.1| DNA gyrase subunit B [Photobacterium sp. SKA34] gi|89049463|gb|EAR55024.1| DNA gyrase subunit B [Photobacterium sp. SKA34] Length = 805 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDGSVSVSDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R + Q + G+P +PL GTRI F P F + Sbjct: 121 SVVNALSEKVELTIQRAGHTYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V S ++E +++ F + GG++ +++ N Sbjct: 180 -EFHYEILAKRLRELSFLNSGVSINLSDERE------EGKEDHFMYEGGIRAFVEHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E+ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP +A + +I+ S R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLAEFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 LE K + + + R+KGLGEM QL ET MD R +++V IN + + Sbjct: 723 ALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AADELF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 779 TCLMGDQVEPRRNFIEDNALKVANLD 804 >gi|269962694|ref|ZP_06177039.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3] gi|269832617|gb|EEZ86731.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3] Length = 805 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 229/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL ++ GT+I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|187478868|ref|YP_786892.1| DNA topoisomerase IV subunit B [Bordetella avium 197N] gi|115423454|emb|CAJ49988.1| topoisomerase IV subunit B [Bordetella avium 197N] Length = 670 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 246/668 (36%), Positives = 354/668 (52%), Gaps = 39/668 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y SSIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AG+ I+V Sbjct: 19 ATPRYTESSIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGHGKQIQV 75 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L +G ++V D+GRGIPV HP+ N +E++ T LHAGGKFD Y SGGLHG Sbjct: 76 TLHADGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 134 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215 VG+SV NAL+ L V V R+ + F+ G + L E R K GTR+ PDPK Sbjct: 135 VGVSVTNALAKRLEVVVWREGGVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDPKY 194 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F L + +SKA L VK +K K + + GL+ YL Sbjct: 195 FDSPN-IPMGELTHLLRSKAVLLSGVKVVLVNEKTGDTKT-------WQYQDGLRGYLSE 246 Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330 L L+ E + G + +W +AW E+ SY N I T GGTH Sbjct: 247 ALAGAELMVPFFEGEQYAGADHETFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 306 Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K +L S Sbjct: 307 ESGLREGLFGAVKSFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 366 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 DA R V + D +L N KL E I +++ R R ++V ++ + L Sbjct: 367 RDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARAR--SAQKVEKRKSSGVAVL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 425 PGKLTDCEASDASRTEIFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 484 Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I D+ A+G D LRY ++ I++DADVDG+HI LLLT F++ L Sbjct: 485 NNEIHDIAVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFFKHFPKL 544 Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 +E H+++ PPL+R+ QG + +Y D+ ++ +K G + +SRFK Sbjct: 545 VEAGHVYVARPPLYRLDVPAQGKRPARKIYCLDDGELAAAQDKLRKEGVRDNALSVSRFK 604 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677 GLGEM +QL ET M+ + R LL V S DT + LMG ++ +R +I+++ Sbjct: 605 GLGEMNPAQLWETTMNPDTRRLLPVAYGD--LSPADTTRMFDMLMGKGESAQRRAWIEDK 662 Query: 678 ASFIDDVG 685 + + + Sbjct: 663 GNLAE-LD 669 >gi|153835131|ref|ZP_01987798.1| DNA gyrase, B subunit [Vibrio harveyi HY01] gi|148868403|gb|EDL67517.1| DNA gyrase, B subunit [Vibrio harveyi HY01] Length = 805 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL ++ GT+I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+++ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESSMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|71066648|ref|YP_265375.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4] gi|71039633|gb|AAZ19941.1| DNA topoisomerase IV subunit B [Psychrobacter arcticus 273-4] Length = 628 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 374/646 (57%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A S+ +LEGLEPVR RPGMY TD +HL EVIDN++DE + GYA I+V L Sbjct: 2 SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALGGYAKTIKVQL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF S YE+SGGLHGVGISV Sbjct: 59 HSDGSLSVEDDGRGMPTDTHPEF-NQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R + F F G P++ L + + KRGTR+ F D F D Sbjct: 118 VNALSTRVEVTVWRDSMQFEMAFENGAPVTALTETISSNKRKRGTRVRFWADGS-FFDTP 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L ++KA L+ + + D EK + F G+ YL +L+ Sbjct: 177 KFNIKQLKHNLKAKAVLAAGLTIEFVDD-------INNEKVVWQFTDGVVEYLSAQLDGL 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + E F + K R + +A++W + SY N I T +GGTH +GLR + Sbjct: 230 ETLPPEPFYYHYDAKKGERAGITFALSWLPDGGTPIQESYVNLIPTAQGGTHVNGLRTGI 289 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ ++ R++ + ++D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 290 LEALREFCDIHNLLPRSVKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAAAVQ 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ ++ E I ++ RL+ ++V RK + LPGKLADC Sbjct: 350 TLAKDAFSLWLNQHADMGAQIAELAINKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ++ G ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+ + ++Q+I D+ Sbjct: 408 GDLRDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIA 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+KV I+ DAD DG HIA+L+ F + L++ HLF+ P Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+ + YA DE Q IL G K +I+RFKGLGEM A QL+ET M+ + Sbjct: 527 PLYRVDVAKEVHYALDETELQHILANVP--GNKKAQITRFKGLGEMSAEQLRETTMNRDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ D++ + T ++ L+ K A +R +++++ + D Sbjct: 585 RRLVQL----DMDDMVLTNSVMDMLLAKKRAADRKSWLEDKGNLAD 626 >gi|304414285|ref|ZP_07395653.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1] gi|304283499|gb|EFL91895.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1] Length = 804 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 346/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V Sbjct: 2 SNIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + ++V D+GRGIP H + S ++I+T LHAGGKFD+++Y++SGGLHGVGI Sbjct: 62 KIHMDNSVSVQDDGRGIPTGLHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGI 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ I Q + G P +PL + + GTR+ F P + F + Sbjct: 121 SVVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTGTRVRFWPSLQTFTNN 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ + +++ E + F++ GG++ +++ +N Sbjct: 180 TEFQYDPLAKRLRELSFLNSGISIKLHDERDNKE-------DHFHYEGGIRAFVEYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF T K VE A+ W + I + N I +GGTH G R A+ Sbjct: 233 KNPIHPKIFYFSTIKDDI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNSYMDKEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R R+ R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLIEYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E ++ G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDEAMEQYQISLALDG 563 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 719 FEAALDWLVKESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A ++ Sbjct: 775 QLFTTLMGDAVEPRRAFIEENALKAANID 803 >gi|240116103|ref|ZP_04730165.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID18] gi|260440087|ref|ZP_05793903.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2] gi|268601769|ref|ZP_06135936.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18] gi|291043375|ref|ZP_06569098.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2] gi|268585900|gb|EEZ50576.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18] gi|291012981|gb|EFE04964.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2] Length = 661 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 350/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVAELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L V+V R + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVSVKRDGKVHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTSLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARIRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AILPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHAINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + Sbjct: 650 MEREGDTA-QLD 660 >gi|27364430|ref|NP_759958.1| DNA gyrase subunit B [Vibrio vulnificus CMCP6] gi|37678198|ref|NP_932807.1| DNA gyrase subunit B [Vibrio vulnificus YJ016] gi|320157813|ref|YP_004190192.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O] gi|27360549|gb|AAO09485.1| DNA gyrase, B subunit [Vibrio vulnificus CMCP6] gi|37196937|dbj|BAC92778.1| DNA gyrase, subunit B [Vibrio vulnificus YJ016] gi|319933125|gb|ADV87989.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O] Length = 805 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R SQ + G+P +PL GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTEK-TGTTVRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +K + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFMYEGGIQAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSYMDKEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + D + +L ++P EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESFMADKLNDFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 LE K + + + R+KGLGEM QL ET MD R ++RV I + Sbjct: 720 FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMRVTIEDAVG----AD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|328907309|gb|EGG27075.1| DNA topoisomerase IV subunit B [Propionibacterium sp. P08] Length = 721 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 331/705 (46%), Gaps = 56/705 (7%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 S S Y A ++ +LEGLE VR RP MYIG TD + L H E+ DN +DE +AG Sbjct: 22 ATVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAG 81 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 Y I V+L+ G + V D GRGIPV+ P+ S +E++ T LHAGGKF Y +SG Sbjct: 82 YGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGVEVVYTKLHAGGKFGGGAYNVSG 140 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKE 197 GLHGVG SVVNA+S L V V R++T++ F RG+P + + Sbjct: 141 GLHGVGASVVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGK 200 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 R GTR+ + PD +IF A +L + A+L ++ + D+ I Sbjct: 201 AKRGATGTRVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPET 260 Query: 258 PEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296 + E F GG+ + + + + G+ Sbjct: 261 GDVLGTVSETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDV 320 Query: 297 THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRA 354 V+ A+ W S+ N I T +GGTH G L R K + Sbjct: 321 DRDLGVDIALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSS 380 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I+ DD++ +++V + EP+F GQTK L + + R VE + Sbjct: 381 EEIVKDDVLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAA 440 Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + A L+E V+ S R+ R + RK A+ LP KL DC + TELFIV Sbjct: 441 DKPVARTLMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIV 500 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+A ARN +QA+LP+RGKILNV A + N + ++Q +G + + Sbjct: 501 EGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKTFG 560 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQ 584 + RY +VI M DAD DGAHI LL T F++ M ++E +F PPL R + Sbjct: 561 LDQARYGRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 620 Query: 585 G-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643 G K +Y + + Q+ + K G E R+KGLGEM ASQLKET MD RTL R+ Sbjct: 621 GMDKYLYTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 680 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 ++ + + + LMG + R +FI E A +D + Sbjct: 681 TVDD----AAEAEGTFEVLMGNEVAPRKQFIVEGAYRLDAEQIDA 721 >gi|313837127|gb|EFS74841.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2] gi|314927849|gb|EFS91680.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1] gi|314971900|gb|EFT15998.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3] Length = 719 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 232/705 (32%), Positives = 331/705 (46%), Gaps = 56/705 (7%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 S S Y A ++ +LEGLE VR RP MYIG TD + L H E+ DN +DE +AG Sbjct: 20 ATVRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAG 79 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 Y I V+L+ G + V D GRGIPV+ P+ S +E++ T LHAGGKF Y +SG Sbjct: 80 YGRRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGVEVVYTKLHAGGKFGGGAYNVSG 138 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKE 197 GLHGVG SVVNA+S L V V R++T++ F RG+P + + Sbjct: 139 GLHGVGASVVNAVSARLDVEVDRKSTVWGMSFRRGVPGIFDGGGPDAPFTPESGVRKVGK 198 Query: 198 KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 R GTR+ + PD +IF A +L + A+L ++ + D+ I Sbjct: 199 AKRGATGTRVRYWPDRQIFLPDAKLSWTKLADRARQTAFLVPGLEIVITDDRGIQTDPET 258 Query: 258 PEK-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKG 296 + E F GG+ + + + + G+ Sbjct: 259 GDVLGTVSETMRFDGGISEFAEYLATDEPVNDVMRLQGEASFTETVPMLDENGGMTPTDV 318 Query: 297 THRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRA 354 V+ A+ W S+ N I T +GGTH G L R K + Sbjct: 319 DRDLGVDIALRWGSGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFNAGLEGTRILKSS 378 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQ 410 I+ DD++ +++V + EP+F GQTK L + + R VE + Sbjct: 379 EEIVKDDVLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEEKMTAFLTSAKAA 438 Query: 411 NPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + A L+E V+ S R+ R + RK A+ LP KL DC + TELFIV Sbjct: 439 DKPVARTLMEKVVSASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIV 498 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+A ARN +QA+LP+RGKILNV A + N + ++Q +G + + Sbjct: 499 EGDSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNVECASIIQVVGAGSGKTFG 558 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQ 584 + RY +VI M DAD DGAHI LL T F++ M ++E +F PPL R + Sbjct: 559 LDQARYGRVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKR 618 Query: 585 G-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRV 643 G K +Y + + Q+ + K G E R+KGLGEM ASQLKET MD RTL R+ Sbjct: 619 GMDKYLYTYTDAEYQRTAAQLTKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRI 678 Query: 644 EINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 ++ + + + LMG + R +FI E A +D + Sbjct: 679 TVDD----AAEAEGTFEVLMGNEVAPRKQFIVEGAYRLDAEQIDA 719 >gi|90413729|ref|ZP_01221717.1| DNA gyrase subunit B [Photobacterium profundum 3TCK] gi|90325198|gb|EAS41695.1| DNA gyrase subunit B [Photobacterium profundum 3TCK] Length = 805 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 229/566 (40%), Positives = 351/566 (62%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP + H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R +I Q + G+P PLE + +K GTRI F P F + Sbjct: 121 SVVNALSEKVELTIYRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIRFWPSEDTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +++ F + GG+K +++ N Sbjct: 180 V-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGGIKAFVEHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I S++F E++ +VE A+ W + I + N I +GG+H +G R AL Sbjct: 233 KTPIHSKVFHFDFERED--GISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP +A + +I+ S R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLSEFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMDQY 556 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + + ++ L+ K + + + R+KGLGEM QL ET MD R +L Sbjct: 708 VQRGERKLSVSS---FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V IN + + LMG + + R FI+E A + ++ Sbjct: 765 QVTINDAV----AADELFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|319792862|ref|YP_004154502.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS] gi|315595325|gb|ADU36391.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS] Length = 662 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 251/674 (37%), Positives = 359/674 (53%), Gaps = 38/674 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 +P ++ Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE + Sbjct: 2 ATPPKTTSDSASGYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEAL 58 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--- 147 AGY I+V+L + +++ D+GRGIP HP+ +E++ T LHAGGKFD + Sbjct: 59 AGYGKKIKVTLHADNSVSIEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGSGGA 117 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGT 205 Y SGGLHGVG+SV NALS L VT R+ +I FS G + LE K E K+GT Sbjct: 118 YSFSGGLHGVGVSVTNALSKRLEVTSHREGSIARLAFSAGDVIEALEIRKLEAGERKQGT 177 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + PD K F A + L + +SKA L V + +K E +++ + Sbjct: 178 TVRAWPDAKYFET-AALPMSELTHLLRSKAVLMPGVSVTLTVEK-------TKETQQWLY 229 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNT 321 GGL YL L +I +G +K + E A + P SY N Sbjct: 230 KGGLSDYLMQTLNGDPVIPLFEGSGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNL 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K + E + + + ++ +D+ A +LS + +P+F Sbjct: 290 IPTSAGGTHESGLRDGLFTAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQ 349 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V + +R + +L Q+ KL E I+ ++ R R ++ E + Sbjct: 350 GQIKERLNSRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQRAGQKVEKRK 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN Sbjct: 410 GSGVAVL--PGKLTDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTW 467 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 +++ N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT Sbjct: 468 EVERDRLFANTEIHDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLT 527 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE H+++ PPLFR+ +G K VYA DE L++ +K G + Sbjct: 528 LFFRHFPKLIETGHVYVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVRE 587 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 G ISRFKGLGEM A QL ET ++ + R L++V++ TQ I KLMG +A Sbjct: 588 GAWSISRFKGLGEMSAEQLWETTLNPDTRRLMQVQL--GRFDFTSTQGEITKLMGKGEAA 645 Query: 669 ERFKFIQERASFID 682 R + ++ RA +D Sbjct: 646 ARRELMELRADDVD 659 >gi|114319170|ref|YP_740853.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1] gi|114225564|gb|ABI55363.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 805 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 223/568 (39%), Positives = 349/568 (61%), Gaps = 19/568 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YD+ SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I+V++ Sbjct: 6 SYDSDSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSVDEALAGYCSEIQVTI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G+ +TV DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+SV Sbjct: 66 HGDNSVTVADNGRGIPVDIHTE-EGCSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L + + R + +Q++ G+P+ PL+ + + GTR+TF P ++F Sbjct: 125 VNALSERLRLVIQRNGKVHTQEYRMGVPVEPLKVVGETQE-TGTRLTFLPSREVFTQT-Q 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ L K + ++L+ V+ ++ E + F + GG+K +++ N+ Sbjct: 183 YNYDILAKRFRELSFLNPGVRIALKDERTEKE-------DVFEYAGGIKAFVEHLNRNKD 235 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + +F ++ V+ A+ W + I + N I +GGTH SG R ALTR Sbjct: 236 PLHPTVFYLAGMRESV---GVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLSGFRAALTR 292 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + +Y E K ++ DD+ ++SV +P+F+ QTK KLVS + + VE Sbjct: 293 TLNQYLEAQGYAKKLKVTPTGDDIREGLTAVVSVKAPDPKFSSQTKDKLVSSEIKGIVEG 352 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 L + F+ +L +NP EA + E +I+ S R RK RE+ R+ + LPGKLADC Sbjct: 353 VLAEAFNDFLYENPAEAKAIAEKIIDASRAREAARKAREMTRRKGVLDVAGLPGKLADCQ 412 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ + ++ L+ Sbjct: 413 EKDPAQSEIYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLASVEVGTLI 472 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALGC + ++ + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++ Sbjct: 473 TALGCGIGKDEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGHVYIAQ 532 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF 604 PPL+++ +G + Y DE + L + Sbjct: 533 PPLYKVKRGKQEHYVKDEAELTEYLLQI 560 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 Q++++ + I R+KGLGEM QL ET M+ + R LLRV I + S Sbjct: 720 LQEVVDWLMDEARRGQSIQRYKGLGEMNPDQLWETTMNPDTRRLLRVTIEDAVAS----D 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI++ A + ++ Sbjct: 776 EIFTTLMGDQVEPRRDFIEQNALTVANLD 804 >gi|325204644|gb|ADZ00098.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M01-240355] Length = 661 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKNKPARKFYALDQNELDSILERLQKEGFKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQILEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|33152675|ref|NP_874028.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP] gi|33148899|gb|AAP96417.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP] Length = 810 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 238/586 (40%), Positives = 354/586 (60%), Gaps = 20/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CQDIIVTIHSDNSISVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL +K GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTIIGNT-DKTGTSVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V ++E E E F + GG+K Y+ Sbjct: 179 AIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDEREGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLATEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVVKKVDANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGAGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 IE ++++ PPL+++ +G + Y D + + + G G Sbjct: 529 IENGYVYIAQPPLYKVKKGKQERYIQDNDEMLQYEIDIALEGAGLY 574 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNISDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + ++ Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-NLD 809 >gi|156972780|ref|YP_001443687.1| DNA gyrase subunit B [Vibrio harveyi ATCC BAA-1116] gi|156524374|gb|ABU69460.1| hypothetical protein VIBHAR_00445 [Vibrio harveyi ATCC BAA-1116] Length = 805 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 229/566 (40%), Positives = 348/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVTDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL ++ GT+I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KSDHFMFEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQPVSS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|197286953|ref|YP_002152825.1| DNA gyrase subunit B [Proteus mirabilis HI4320] gi|227354806|ref|ZP_03839223.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906] gi|194684440|emb|CAR46165.1| DNA gyrase subunit B [Proteus mirabilis HI4320] gi|227165124|gb|EEI49955.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906] Length = 804 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 231/574 (40%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHSDNSVSVRDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R I Q + G+P L+ + +K GT + F P F + Sbjct: 121 SVVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFKGE 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++ E + F++ GG+K +++ N Sbjct: 180 TEFQYDILAKRLRELSFLNSGVSIRLIDKRDNRE-------DHFHYEGGIKAFVEYLSRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F TEK G VE A+ W + + + N I +GGTH G R A+ Sbjct: 233 KTPIHQNVFYFSTEKDGI---GVEVAMLWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAM 289 Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K IS DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYMDKEGFNKKSKISATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 350 ETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+ +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ +Q++ Sbjct: 410 CSERDPAFSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLASQEVAT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+F+ Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHIFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D++ + L G Sbjct: 530 AQPPLYKVKKGKQEQYIKDDDAMDEYLMSIALDG 563 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ LE K + + + R+KGLGEM QL ET M+ + R +++V + + T Sbjct: 719 FEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMQVTVKDAI----ATD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A +++ Sbjct: 775 ELFTTLMGDAVEPRRAFIEENALKAENID 803 >gi|76798992|ref|ZP_00781191.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21] gi|76585663|gb|EAO62222.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21] Length = 599 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 228/614 (37%), Positives = 349/614 (56%), Gaps = 25/614 (4%) Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 ++DN++DE +AG+A I+V ++ + +TVVD+GRGIPV+ K + +E + T LHAG Sbjct: 1 IVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVDIQEK-TGRPAVETVFTVLHAG 59 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF Y++SGGLHGVG SVVNALS +L V V + + Q++ RG+ ++ LE Sbjct: 60 GKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT- 118 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GT + F PDP+IF + FD +L K Q A+L+ ++ S +E E Sbjct: 119 DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKE--- 175 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 +++ GG+ +Y++ EN+ +I E G +VE A+ + + S+ Sbjct: 176 --YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI---SVEVAMQYTTGYQETVMSFA 230 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I T EGGTHE G R ALTR I YA+ + + ++ +D+ ++SV P Sbjct: 231 NNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNP 290 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTKTKL + + + + F+ +L++NP A K++E I S+ R+ ++ RE Sbjct: 291 QFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRARE 350 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 +K+ + LPGKLADCS N A ELFIVEGDSAGGSAK RNR QA+LP+RGKI Sbjct: 351 VTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKI 410 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A +KI N++I L A+G + + +RY+K++IMTDADVDGAHI +LLL Sbjct: 411 LNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRYQKLVIMTDADVDGAHIRTLLL 470 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD----EEHKQKILEEFKKHGKGK 611 T Y+ M ++E ++++ PP++ + G++ Y EE ++ L+ + G+ K Sbjct: 471 TLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPGVNQEEELRQALDTYS-SGRSK 529 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERF 671 + R+KGLGEM QL ET MD R + RV ++ + + LMG + + R Sbjct: 530 PTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDD----AAEADKIFDMLMGDRVEPRR 585 Query: 672 KFIQERASFIDDVG 685 +FI+ A + ++ Sbjct: 586 EFIEANAVY-SNLD 598 >gi|254507351|ref|ZP_05119487.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16] gi|219549811|gb|EED26800.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16] Length = 805 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 227/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCQDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVRDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL + +K GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +++ F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKQDHFMYEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV++P EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLVEHPTEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQ---PVASFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|313667941|ref|YP_004048225.1| topoisomerase IV subunit B [Neisseria lactamica ST-640] gi|313005403|emb|CBN86837.1| topoisomerase IV subunit B [Neisseria lactamica 020-06] Length = 661 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ S +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVHDNGRGIPVGLHPE-EGVSVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W E SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLGEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|261399940|ref|ZP_05986065.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970] gi|269210391|gb|EEZ76846.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970] Length = 661 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVHDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSISELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|254472258|ref|ZP_05085658.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062] gi|211958541|gb|EEA93741.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062] Length = 817 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 242/583 (41%), Positives = 344/583 (59%), Gaps = 16/583 (2%) Query: 25 KSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVID 83 P++ + + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+D Sbjct: 2 SETSTPENGGPEQANGAGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 61 Query: 84 NAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF 143 N++DE +AG+A+ + V+L+ +G +TV DNGRGIPV+ HP+ S E+I+T LHAGGKF Sbjct: 62 NSIDEALAGHADYVTVTLNADGSVTVTDNGRGIPVDIHPE-EGISAAEVIMTQLHAGGKF 120 Query: 144 DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR 203 D+++Y++SGGLHGVG+SVVNALS L + + R + +F G PLE K Sbjct: 121 DSNSYKVSGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAGPLEVVGDAPGKS 180 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT +TF P P+ F FD L + A+L+ + + ++ P EE Sbjct: 181 GTEVTFTPSPETFTKT-EFDYDTLEHRLRELAFLNSGARIILTDNR-----GVEPHVEEL 234 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322 Y+ GGL+ +++ + + E T EK G TVE A+ W E + N I Sbjct: 235 YYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGI---TVEVAMWWNSSYHENVLCFTNNI 291 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380 +GGTH +G R ALTR + YA+ + + +D +LSV + +P+F+ Sbjct: 292 PQRDGGTHLAGFRAALTRQLTGYADTSGLLKREKVSPTGEDCREGLSCVLSVKVPDPKFS 351 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 QTK KLVS + + VEN + + +L +NP A ++ V+E + R RK RE Sbjct: 352 SQTKDKLVSSEVRPVVENLVGEALSTWLEENPAPAKSIVSKVVEAASAREAARKARELTR 411 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RK A+ LPGKLADC + A ELFIVEGDSAGGSAKQ R+RSNQAVLPL+GKILNV Sbjct: 412 RKGALDIASLPGKLADCQERDASKAELFIVEGDSAGGSAKQGRDRSNQAVLPLKGKILNV 471 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558 A +K+ ++Q+I L+ ALG ++ E LRY K+IIMTDADVDGAHI +LLLTF Sbjct: 472 ERARFDKMISSQEIGTLITALGTGIGNEEFNLEKLRYHKIIIMTDADVDGAHIRTLLLTF 531 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++M DLIE ++++ PPL+++T+G Y DE ++ L Sbjct: 532 LFRQMPDLIENGYVYIAQPPLYKVTRGKSEQYLKDEAAFEEYL 574 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 Q +LE G+ I + R+KGLGEM QL ET +D N R+LL+V+I D Sbjct: 733 QALLEAVYAQGRKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKI----KEADAADD 788 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + + R FIQ A + ++ Sbjct: 789 IFTKLMGDEVEPRRDFIQTNALSVANLD 816 >gi|222053121|ref|YP_002535483.1| DNA gyrase, B subunit [Geobacter sp. FRC-32] gi|221562410|gb|ACM18382.1| DNA gyrase, B subunit [Geobacter sp. FRC-32] Length = 794 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 239/579 (41%), Positives = 349/579 (60%), Gaps = 18/579 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +N S +Y A I++LEGL VR RP MYIG T + LHHL EV+DN++DE +AG+ Sbjct: 1 MSNDETSKDYGADKIKVLEGLSAVRKRPAMYIGSTSIQGLHHLVYEVVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ +G +TVVDNGRGIP + HP KS E++LT LHAGGKFDN++Y++SGGL Sbjct: 61 DDIAVTINVDGSVTVVDNGRGIPTDMHP-TEGKSAAEVVLTVLHAGGKFDNTSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS +L + + R IF Q + G P PLE + + RGT+I F PD + Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKIFKQSYRCGDPQGPLEVVGETKK-RGTKIIFFPDDE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + + A+L+ VK ++ + EF++ GG++++++ Sbjct: 179 IFET-TEFSFDILSQRLRELAFLNAGVKIKIVDER-------TEKVHEFFYEGGIRSFVE 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ I + EK G +E A+ + + ++ S+ N I T EGGTH G Sbjct: 231 YLNKNKTPIHPQPIFINGEKGGV---EMEIAMQYNDSYDEKVFSFANNINTHEGGTHLVG 287 Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + YA + + +I +DL ++SV I +P+F GQTKTKL + + Sbjct: 288 FKAALTRTMNTYANTNNLLKNVKENISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE + + YL +NP A ++LE I+ + R R+ R+ RK A+ LP Sbjct: 348 VKGYVETLMNEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLP 407 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ Sbjct: 408 GKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSS 467 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q+I L+ ALG + + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ Sbjct: 468 QEIRTLIAALGTSVGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLELIER 527 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL++I +G K Y +E Q L E Sbjct: 528 GYLYIAQPPLYKIKRGKKEQYLKNEAALQSYLLEEGTED 566 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++L F + K + I R+KGLGEM QL ET M R LL+V+I + + ++ Sbjct: 710 EELLAFFLETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRLLLQVKIEDTV----EAEE 765 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 766 IFTVLMGDQVEPRREFIELNALNVSNLD 793 >gi|282854010|ref|ZP_06263347.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes J139] gi|282583463|gb|EFB88843.1| DNA gyrase, B subunit, C-terminal domain protein [Propionibacterium acnes J139] Length = 698 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 234/703 (33%), Positives = 336/703 (47%), Gaps = 56/703 (7%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S S Y A ++ +LEGLE VR RP MYIG TD + L H E+ DN +DE +AGY Sbjct: 1 MRTASTSREYGAKNLLVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGYG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I V+L+ G + V D GRGIPV+ P+ S LE++ T LHAGGKF Y +SGGL Sbjct: 61 RRITVTLEKAGSILVTDEGRGIPVDVEPR-TGLSGLEVVYTKLHAGGKFGGGAYNVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP---------------LSPLEKKEKV 199 HGVG SVVNA+S L V V R++T++ F RG+P + + Sbjct: 120 HGVGASVVNAVSVRLDVEVDRKSTVWGMSFRRGVPGVFEGEGPDAPFTPGSGVRKVGKAK 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 R GTR+ + PD +IF A ++L + A+L ++ + ++ I + Sbjct: 180 RGVTGTRVRYWPDRQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGIQTDPETGD 239 Query: 260 K-----EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298 E F GG+ + + ++ + + G+T Sbjct: 240 VLETVSETMRFDGGISEFAEYLATDQPVNNVMRLQGETSFTETVPMLDENGGMTPTDVDR 299 Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK-YAELTQNKRAIS 356 V+ A+ W S+ N I T +GGTH G L R K + Sbjct: 300 DLGVDIALRWGTGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSAGLEGTRILKSSEE 359 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLVQNP 412 I+ DD++ +++V + EP+F GQTK L + + R VE+ + + Sbjct: 360 IVKDDVLEGMTAVVTVSLAEPQFEGQTKEVLGTPPVRRLVARIVEDKMTAFLTSAKAADK 419 Query: 413 IEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEG 471 A L+E V+ S R+ R + RK A+ LP KL DC + TELFIVEG Sbjct: 420 PVARALMEKVVNASRTRVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDVTELFIVEG 479 Query: 472 DSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE 531 DSA G+A ARN +QA+LP+RGKILNV A + N + ++Q +G + + + Sbjct: 480 DSALGTANVARNSEHQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDLD 539 Query: 532 DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI-----TQG- 585 RY KVI M DAD DGAHI LL T F++ M ++E +F PPL R +G Sbjct: 540 QARYGKVIFMADADSDGAHIRCLLATLFFRYMRPMVEAGRVFSAVPPLHRFELINPKRGM 599 Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 K +Y + + Q+ + K G E R+KGLGEM ASQLKET MD RTL R+ + Sbjct: 600 DKYLYTYTDADYQRTAAQLAKKGVRFKEPQRYKGLGEMDASQLKETTMDPRHRTLRRITV 659 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID--DVGT 686 + + + + LMG + R +FI E A +D + Sbjct: 660 DD----AAEAEGTFEILMGNEVAPRKQFIVEGAYRLDAEQIDA 698 >gi|117619604|ref|YP_854532.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561011|gb|ABK37959.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 803 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 234/575 (40%), Positives = 355/575 (61%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I+ Sbjct: 2 SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIQ 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +G ++V DNGRGIPV+ HP+ +S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VKIHSDGSVSVRDNGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD+L +T+ R ++ Q + G P +PL++ GT + F P P IF D Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPTIFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ E F + GG+K +++ + Sbjct: 180 TL-FHYEILAKRLRELSFLNSGVSIRLLDERDGRE-------AHFCYEGGIKAFVEYLNQ 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I ++F TE+ G VE A+ W + + + N I +GGTH G R A Sbjct: 232 NKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K + DD+ + ++SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE A+ + +L++NP +A ++ +I+ + R RK RE RK A+ LPGKLA Sbjct: 349 VEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + LRY +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++ Sbjct: 469 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE+ + G Sbjct: 529 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 563 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + +E GK I I R+KGLGEM QL ET MD R +L Sbjct: 706 IKRGEKV---KPVASFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I+ + + LMG + R FI+ A + ++ Sbjct: 763 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 802 >gi|90581121|ref|ZP_01236920.1| DNA gyrase subunit B [Vibrio angustum S14] gi|90437642|gb|EAS62834.1| DNA gyrase subunit B [Vibrio angustum S14] Length = 805 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 228/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++ GGLHGVG+ Sbjct: 62 TIHEDGSVSVSDDGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVPGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I+ Q + G+P +PL GTRI F P F + Sbjct: 121 SVVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTEK-TGTRIRFWPSEDTFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V S ++E +++ F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSINLSDERE------EGKEDHFMYEGGIRAFVEHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E+ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHPKVFHFDSERDD--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP +A + +I+ S R RK R RK A+ LPGKLAD Sbjct: 351 ESAMNEKLAEFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPAVSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMNQYQTTLALDN 564 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + LE K + + + R+KGLGEM QL ET MD R +++V IN + Sbjct: 720 FKGALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTCLMGDQVEPRRNFIEENALKVANLD 804 >gi|254805438|ref|YP_003083659.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14] gi|304386839|ref|ZP_07369103.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis ATCC 13091] gi|254668980|emb|CBA07308.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14] gi|254671649|emb|CBA09375.1| topoisomerase IV subunit B [Neisseria meningitidis alpha153] gi|304339093|gb|EFM05183.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis ATCC 13091] gi|308389804|gb|ADO32124.1| topoisomerase IV subunit B [Neisseria meningitidis alpha710] Length = 661 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|107023297|ref|YP_621624.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054] gi|116690380|ref|YP_836003.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424] gi|170733717|ref|YP_001765664.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia MC0-3] gi|254247559|ref|ZP_04940880.1| DNA topoisomerase [Burkholderia cenocepacia PC184] gi|105893486|gb|ABF76651.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia AU 1054] gi|116648469|gb|ABK09110.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia HI2424] gi|124872335|gb|EAY64051.1| DNA topoisomerase [Burkholderia cenocepacia PC184] gi|169816959|gb|ACA91542.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia cenocepacia MC0-3] Length = 660 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 245/676 (36%), Positives = 363/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQGAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R T E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+++ PPLFR+ +G K +YA D+ + IL++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|16272510|ref|NP_438724.1| DNA gyrase subunit B [Haemophilus influenzae Rd KW20] gi|1170145|sp|P43701|GYRB_HAEIN RecName: Full=DNA gyrase subunit B gi|1573554|gb|AAC22225.1| DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd KW20] Length = 806 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 233/578 (40%), Positives = 352/578 (60%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +DNY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETTNDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+G GIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHDDNSVSVQDDGGGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P SPL + GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGET-EATGTTVRFWPSSDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L K + ++L+ V ++ +E + F++ GG++ +++ Sbjct: 180 FA-ITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK G VE A+ W + N + + N I +GGTH +G Sbjct: 232 LNKNKNPIHPKPFYFTAEKDGI---GVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I + R RK R RK A+ LPG Sbjct: 349 KSAVESAMNEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ +G + Y D + ++ G Sbjct: 529 YVYIAQPPLYKVKKGKQERYIKDADEMEQYELTLALDG 566 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ +E K + +E+ R+KGLGEM A QL ET MD N R +L Sbjct: 710 VIRGEKVQPVRS---FEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++ Sbjct: 767 KVSIKDAV----AADQLFTTLMGDEVEPRREFIELNALRA-NLD 805 >gi|256370765|ref|YP_003108590.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM] gi|256009557|gb|ACU52917.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM] Length = 634 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 249/654 (38%), Positives = 373/654 (57%), Gaps = 30/654 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY + +I+ L+G+E +R+RP MYIG LH L +EVIDN++DE ++GY I ++ Sbjct: 2 ENYTSKNIQYLDGIEHIRLRPAMYIGDIGINGLHQLLTEVIDNSIDEYLSGYCTKIRITF 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N ++TV+DNGRGIPV+ + K STLE+I+T + AGGKFD Y+ISGGLHGVGIS Sbjct: 62 HKNEYITVLDNGRGIPVDLY-KNKGISTLEVIMTKVGAGGKFDKKAYKISGGLHGVGISC 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIFGDK 219 VNALS L + R I+ Q +S+GIP++ L+K ++ + RGT ITF+ + F K Sbjct: 121 VNALSCYLLARIFRNGKIYEQIYSKGIPITKLKKLDQKNKKQMRGTEITFKVEK-YFFGK 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD +L + +YL+ + + K Y G+K ++ ++ Sbjct: 180 KIFDYNLILNRIKELSYLNKGLLLILIDKRFYPNKKEFC-----YSKKGIKEFILNLSKD 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + K KK +++ ++ E +I SY N I T GGTH SG + ALT Sbjct: 235 KNYLKKFFYLKKKNKKIQLELAMKFNSSFKE---KIYSYVNNIPTPSGGTHISGFKRALT 291 Query: 340 RGI--KKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 + Y K I I D+ + I+S+ I P+F GQTK KL + + VE Sbjct: 292 KTFKKFYYKYNLYKKYKIEISGKDIREGIIAIISMRIANPQFEGQTKKKLGNNEIIGLVE 351 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + + ++ NP+ K+L V + +K R + +K I LP KLADCS Sbjct: 352 KIVSNELNLFINANPLLKKKILNKVFLTVKALQAYKKVRNLIQKQII----LPLKLADCS 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 N + E+++VEGDSAGG+AKQ R R QAV PLRGKILNV + EKI N++I +L Sbjct: 408 SNNHNLCEIYLVEGDSAGGTAKQGRERKFQAVFPLRGKILNVEKSMKEKIFENEEIRNLF 467 Query: 518 QALGCRTRSQY-----REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LG R + +++RY+K+IIMTDAD+DG+HI++L+LTFF++ + LIE+ ++ Sbjct: 468 SVLGIFLRKKEKKIVLNIKNIRYKKIIIMTDADIDGSHISTLILTFFFRNLKILIEKGYI 527 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 ++ +PPLF I K +YA +E+ K+KIL+ I I R+KGLGEM A QL ET Sbjct: 528 YIATPPLFLIKHFNKKLYAWNEKEKEKILKNIG--NLKGIHIQRYKGLGEMDAEQLWETT 585 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 M+ RTL +V+I+ + K+ + LMG +R KFI++ A F ++ Sbjct: 586 MNPLNRTLRQVKID----NFKNANYIFSMLMGKNVFKRRKFIEQNALFA-NIDA 634 >gi|121635323|ref|YP_975568.1| DNA topoisomerase IV subunit B [Neisseria meningitidis FAM18] gi|161870530|ref|YP_001599702.1| DNA topoisomerase IV subunit B [Neisseria meningitidis 053442] gi|120867029|emb|CAM10792.1| topoisomerase IV subunit B [Neisseria meningitidis FAM18] gi|161596083|gb|ABX73743.1| topoisomerase IV subunit B [Neisseria meningitidis 053442] gi|325132822|gb|EGC55502.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M6190] gi|325134784|gb|EGC57421.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M13399] gi|325138725|gb|EGC61277.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis ES14902] gi|325198780|gb|ADY94236.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis G2136] Length = 661 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 244/672 (36%), Positives = 352/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-----RGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + G + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|93007238|ref|YP_581675.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5] gi|92394916|gb|ABE76191.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5] Length = 628 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 256/646 (39%), Positives = 378/646 (58%), Gaps = 26/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y+A S+ +LEGLEPVR RPGMY TD +HL EVIDN++DE +AGYA I+V L Sbjct: 2 SQYNAQSLEVLEGLEPVRRRPGMY---TDTTRPNHLAQEVIDNSVDEALAGYAKTIKVQL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V D+GRG+P + HP+F N+S +E+ILT LHAGGKF S YE+SGGLHGVGISV Sbjct: 59 HSDGSLSVEDDGRGMPTDIHPEF-NQSGIELILTRLHAGGKFSTSNYEVSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS + VTV R +T F F G P++PL + + KRGT++ F D F D Sbjct: 118 VNALSTRVEVTVWRDSTQFDMAFENGAPVTPLTEAVSSNKRKRGTKVHFWADGS-FFDTP 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ +L ++KA L+ + ++ D EK + F G+ YL +L+ Sbjct: 177 KFNVKQLKHNLKAKAVLAAGLTIEFTDD-------INDEKVVWQFTDGVVEYLSEQLDGL 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + F + K R + +A++W + SY N I T +GGTH +GLR + Sbjct: 230 ETLPEAPFYYNYDAKAGERAAITFALSWLPDGGTPVQESYVNLIPTAQGGTHVNGLRTGI 289 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 ++++ ++ R++ + ++D+ ILS+ EP+F+GQTK +L S +A V+ Sbjct: 290 LEALREFCDIHNLLPRSVKLTAEDVWDGVNYILSLKFSEPQFSGQTKERLSSREAAGAVQ 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 +D F +L Q+ T++ E I ++ RL+ ++V RK + LPGKLADC Sbjct: 350 TLAKDAFSLWLNQHADMGTQIAELAISKAGRRLK--SAKKVARKKITQGPALPGKLADCR 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 ++ G ELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN S+ + ++Q+I D+ Sbjct: 408 GDLRDGAELFLVEGDSAGGSAKQARDRHYQAILPLRGKILNTWEVSSDTVLSSQEIHDIA 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY+KV I+ DAD DG HIA+L+ F + L++ HLF+ P Sbjct: 468 IAIGVDPASDDL-SELRYDKVCILADADSDGLHIATLICALFVKHFPALVDAGHLFVAMP 526 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+R+ + YA DE Q IL G K +I+RFKGLGEM A QL+ET M+ + Sbjct: 527 PLYRVDVAKEVHYALDETELQHILANVP--GNKKAQITRFKGLGEMSAEQLRETTMNRDT 584 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFID 682 R L+++ D++ + T ++ L+ K A +R +++++ + D Sbjct: 585 RRLVQL----DMDDMVLTNSVMDMLLAKKRAADRKIWLEDKGNLAD 626 >gi|325989383|ref|YP_004249082.1| DNA gyrase subunit B [Mycoplasma suis KI3806] gi|323574468|emb|CBZ40118.1| DNA gyrase subunit B [Mycoplasma suis] Length = 655 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 232/660 (35%), Positives = 349/660 (52%), Gaps = 28/660 (4%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + N + + Y SSI++LEGLE +R+RPGMYIG + LHHL E +DNA+DE Sbjct: 2 STEEKKLINPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSLGVEGLHHLIWEALDNAVDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 AGYA I+++L+ ++V DNGRGIP+ +P+ S + I T LHAGGKF+NS+Y Sbjct: 62 ATAGYATEIKLTLEEEHIVSVEDNGRGIPIGINPQ-TGLSNIVTIFTHLHAGGKFNNSSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTR 206 + SGGLHGVGI VNALS L V V R+ KF+ G L E V +K GT+ Sbjct: 121 KTSGGLHGVGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTK 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I ++PD + +D + + Q+ +YL+ + + E E E+F Sbjct: 181 IRWQPDFSVLER-NDYDIGLIKERLQNLSYLNKNLSFIF-------ENKNTGEVEQFLSS 232 Query: 267 GGLKTYLQTKLENRSLISS-------EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319 GL ++++ + + E K E + R V + + ++P I S+C Sbjct: 233 QGLADWVESINQGFETVHPIQNIVIEEQQVKKKEAVNSLRCEVSFQYSLERDHPVIYSFC 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPE 378 N I T GG H ++ + +++Y + I +D++ ++SV+ +P Sbjct: 293 NNIKTSLGGVHLETVKEGILSCVRQYAEDWKIIDDKYKWIKEDVISGISLVVSVYYTDPS 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER-LRRRKQRE 437 + GQTK L+S + + + + N A +L + + +R R + Sbjct: 353 YKGQTKETLISNEIRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEM 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 + L KLADC+ +EL+IVEGDSAGGSAK ARNR QA+LP++GK+ Sbjct: 413 SKKIHKENLLGFAEKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLA 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 N AS KI +N+++ +L+ A+GC + LRY K+I+MTDADVDG+HI L++ Sbjct: 473 N-ASKKKNKIFDNEEVKNLITAIGCSYGHNFDISKLRYNKIILMTDADVDGSHIQVLIMN 531 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FFY+ M L+E H+++ PL++ + +++Y DEE K++ K + E SRF Sbjct: 532 FFYKYMKPLLENGHVYIARSPLYKASSKKETIYLLDEEEKREFE---KNNKSSSYEFSRF 588 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM +QL ET MD +RT L+V+I D TQ ++ KLMG K R FI E Sbjct: 589 KGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPK----TQATMEKLMGAKVKPRKIFITEN 644 >gi|261250636|ref|ZP_05943211.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891] gi|260939205|gb|EEX95192.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891] Length = 805 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 230/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R +Q + G P +PL +K GT+I F P + F + Sbjct: 121 SVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGDT-DKTGTQIRFWPSGETFTNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIMLKDERE------EDKSDHFMFEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV+NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + LE K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 EALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|15677530|ref|NP_274686.1| DNA topoisomerase IV subunit B [Neisseria meningitidis MC58] gi|7226935|gb|AAF42030.1| topoisomerase IV subunit B [Neisseria meningitidis MC58] gi|316984829|gb|EFV63786.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76] gi|325140855|gb|EGC63365.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis CU385] gi|325199724|gb|ADY95179.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76] Length = 661 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 244/672 (36%), Positives = 354/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNASDEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ S +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVHDNGRGIPVGLHPE-EGVSVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G DL RY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|218768702|ref|YP_002343214.1| DNA topoisomerase IV subunit B [Neisseria meningitidis Z2491] gi|121052710|emb|CAM09053.1| topoisomerase IV subunit B [Neisseria meningitidis Z2491] gi|319410935|emb|CBY91330.1| topoisomerase IV subunit B [Neisseria meningitidis WUE 2594] Length = 661 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFFKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|325142847|gb|EGC65215.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis 961-5945] Length = 661 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 348/672 (51%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEENPEITSYCNTILTDEG 327 + + G G E + SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEESSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|300783223|ref|YP_003763514.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] gi|299792737|gb|ADJ43112.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] Length = 683 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 227/681 (33%), Positives = 336/681 (49%), Gaps = 42/681 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y A + LEGLE VR RPGMYIG TD + ++HLFSEV+DN+ DE +AG+A I Sbjct: 2 TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGINHLFSEVVDNSTDEGVAGHATKIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + V D+GRGIP H K S +E++LT LHAGGKF S Y+ SGGLHGVG Sbjct: 62 VTLHADGSVQVDDDGRGIPTGTHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NK 202 S VNALS VTV + + F G+P + K + + Sbjct: 121 ASAVNALSHRFDVTVKQDGKVHQMSFKHGVPGTFDAPGPKAKFTRRSGLNLTGKMKRGER 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC---DKEIAEKYGIPE 259 GT I + D + F A D + ++ A+L V D E + P Sbjct: 181 SGTSIRYWYDARYFESGAALDVEGVRAKLRNTAFLVPGVTYVLRTAIEDTINEETFHFPH 240 Query: 260 ----KEEFYFPGGLKTYLQTKLENRSLISSEI---FTGKTEKKGTHRGTVEWAIAWCEEN 312 +F P G K T L E G + VE A+ W Sbjct: 241 GLVDMVDFLTPSGEKPVCGTLLITGEGTYKENAADAAGVMQSNVERHAEVEVAMRWGTGY 300 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368 + NTI GGTH G A+T+ +++ T+ + +D++ Sbjct: 301 ERTVECFTNTIRNVHGGTHRRGFDRAVTKALQEAISKTRGLLKPKEDMPTLEDVLEGMTA 360 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426 ++ V + EP+F QTK +L + R ++ + + + EA +L+ V++ S Sbjct: 361 VVHVRLPEPQFTSQTKDELSTAGITRVLQAIVDKHVKAWTEDRKTKSEAKVVLQKVVDAS 420 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 RL +++Q++ RKTA+ +P KL DC +ELF+VEGDSA GSA+ AR Sbjct: 421 RVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSE 480 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LPLRGKILNV A N +I +VQ LG T + +RY +VI+M DAD Sbjct: 481 YQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRTFDLTTMRYGRVILMADAD 540 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-ITQGT--KSVYAHDEEHKQKILE 602 VDG+HI +LL+T F + M +IE L+ PPL + +T+G ++ + + + Sbjct: 541 VDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKLVTKGRNPETHFTFTQREMETKFA 600 Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 E +K GK + + RFKGLGEM A +L ET M+ R++ R+ ++ + + ++ Sbjct: 601 ELEKAGKSIVTPVPRFKGLGEMDADELWETTMNPATRSVRRITMDD----AEAAEGALEL 656 Query: 662 LMGTKADERFKFIQERASFID 682 LMG K + R ++ + +D Sbjct: 657 LMGEKVEPRRNWLVASSDRVD 677 >gi|325972890|ref|YP_004249954.1| DNA gyrase subunit B [Mycoplasma suis str. Illinois] gi|323651492|gb|ADX97574.1| DNA gyrase, subunit B [Mycoplasma suis str. Illinois] Length = 655 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 232/660 (35%), Positives = 349/660 (52%), Gaps = 28/660 (4%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDE 88 + N + + Y SSI++LEGLE +R+RPGMYIG + LHHL E +DNA+DE Sbjct: 2 STEEKKLINPTPNVEYGDSSIQVLEGLEAIRVRPGMYIGSLGVEGLHHLIWEALDNAVDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 AGYA I+++L+ ++V DNGRGIP+ +P+ S + I T LHAGGKF+NS+Y Sbjct: 62 ATAGYATEIKLTLEEEHIVSVEDNGRGIPIGINPQ-TGLSNIVTIFTHLHAGGKFNNSSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE--KKEKVRNKRGTR 206 + SGGLHGVGI VNALS L V V R+ KF+ G L E V +K GT+ Sbjct: 121 KTSGGLHGVGIKCVNALSTFLEVNVCREGKEVFTKFTEGGKLESQPSVISESVGSKTGTK 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I ++PD + +D + + Q+ +YL+ + + E E E+F Sbjct: 181 IRWQPDFSVLER-NDYDIGLIKERLQNLSYLNKNLSFIF-------ENKNTGEVEQFLSS 232 Query: 267 GGLKTYLQTKLENRSLISS-------EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYC 319 GL ++++ + + E K E + R V + + ++P I S+C Sbjct: 233 QGLADWVESINQGFETVHPIQNIVIEEQQVKKKETVNSLRCEVSFQYSLERDHPVIYSFC 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPE 378 N I T GG H ++ + +++Y + I +D++ ++SV+ +P Sbjct: 293 NNIKTSLGGVHLETVKEGILSCVRQYAEDWKIIDDKYKWIKEDVISGISLVVSVYYTDPS 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER-LRRRKQRE 437 + GQTK L+S + + + + N A +L + + +R R + Sbjct: 353 YKGQTKETLISNEIRPILREQIEGKLHTSFQDNIEVAKLILGHIQQEYRKRINREQMLEM 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 + L KLADC+ +EL+IVEGDSAGGSAK ARNR QA+LP++GK+ Sbjct: 413 SKKIHKENLLGFAEKLADCTIKNPEFSELYIVEGDSAGGSAKGARNREFQAILPIKGKLA 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 N AS KI +N+++ +L+ A+GC + LRY K+I+MTDADVDG+HI L++ Sbjct: 473 N-ASKKKNKIFDNEEVKNLITAIGCSYGHNFDISKLRYNKIILMTDADVDGSHIQVLIMN 531 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRF 617 FFY+ M L+E H+++ PL++ + +++Y DEE K++ K + E SRF Sbjct: 532 FFYKYMKPLLENGHVYIARSPLYKASSKKETIYLLDEEEKREFE---KNNKSSSYEFSRF 588 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQER 677 KGLGEM +QL ET MD +RT L+V+I D TQ ++ KLMG K R FI E Sbjct: 589 KGLGEMSPAQLWETTMDPKRRTFLQVQIIDDPK----TQATMEKLMGAKVKPRKIFITEN 644 >gi|33592391|ref|NP_880035.1| DNA topoisomerase IV subunit B [Bordetella pertussis Tohama I] gi|33572036|emb|CAE41560.1| topoisomerase IV subunit B [Bordetella pertussis Tohama I] Length = 653 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 249/668 (37%), Positives = 353/668 (52%), Gaps = 39/668 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AGY I+V Sbjct: 2 ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGYGKQIQV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L G+G ++V D+GRGIPV HP+ N +E++ T LHAGGKFD Y SGGLHG Sbjct: 59 TLHGDGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215 VG+SV NAL+ L V V R + F+ G + L E R K GTR+ PD K Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDAKY 177 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F A L + +SKA L VK +K + + + GL+ YL Sbjct: 178 FDS-PAIPMAELTHLLRSKAVLLPGVKVSLVNEK-------TGDTRTWQYQEGLRGYLAE 229 Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330 L L+ + + G +W +AW E+ SY N I T GGTH Sbjct: 230 ALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 289 Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K +L S Sbjct: 290 ESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFTRASFVLSAKVLDPQFQGQIKERLNS 349 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 DA R V + D +L N KL E I +++ R R ++V ++ + L Sbjct: 350 RDAVRLVGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVAVL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 408 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 467 Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I D+ A+G E D LRY ++ I++DADVDG+HI LLLT FY+ L Sbjct: 468 NNEIHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKL 527 Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 IE ++F+ PPLFR+ QG + +Y D + ++ +K G + +SRFK Sbjct: 528 IEAGNVFVARPPLFRVDVPAQGKRPARKIYCLDAGELEAAQDKLRKEGVRESAWSVSRFK 587 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677 GLGEM QL ET M+ + R LL V + DT + LMG ++ +R +I+E+ Sbjct: 588 GLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPGDTTRMFDMLMGKGESSQRRAWIEEK 645 Query: 678 ASFIDDVG 685 + + + Sbjct: 646 GNLAE-LD 652 >gi|312797004|ref|YP_004029926.1| Topoisomerase IV subunit B [Burkholderia rhizoxinica HKI 454] gi|312168779|emb|CBW75782.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Burkholderia rhizoxinica HKI 454] Length = 680 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 246/674 (36%), Positives = 359/674 (53%), Gaps = 43/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 A + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 19 MATKKSGPAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIVQEVIDNASDEALGGFG 75 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L +G ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 76 TQIIVTLHTDGSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 134 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK---KEKVRNKRGTRIT 208 GGLHGVG+SV NALS L VTV R + FS G + L +V K GTR+T Sbjct: 135 GGLHGVGVSVTNALSQRLDVTVWRDGKVADIGFSHGDVVRALTVRAANGRVDKKSGTRVT 194 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 PDPK F + L ++ +SKA L V+ +K E++ + + G Sbjct: 195 AWPDPKYFDSAN-LPQSELQRLLRSKAVLLPGVEVVLITEK-------TGERQSWKYKDG 246 Query: 269 LKTYLQTKLENRSLISSEIFTGK-------TEKKGTHRGTVEWAIAWCEENP-EITSYCN 320 L+ YL L + + T+ W +AW EE P SY N Sbjct: 247 LRGYLLEGLAGYDTLIPLFEGERYAGSSRTTDDTFAEGEGASWVVAWSEEGPLLRESYVN 306 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEF 379 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 307 LIPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQF 366 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439 GQ K +L S DA R V + +R + +L Q+ KL E VI++++ R R ++ E Sbjct: 367 QGQIKERLNSRDAVRLVSSFVRPSLELWLNQHVEHGRKLAELVIKQAQARTRAGQKVEKR 426 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 427 KSSGVAVL--PGKLVDCESTDVARNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNT 484 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLL 556 +++ N ++ D+ A+G + +LRY K+ I++DADVDG+HI LLL Sbjct: 485 WETERDRLFANNEVHDIAVAIGVDPHASDDAIDLSNLRYGKICILSDADVDGSHIQVLLL 544 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG-- 608 T F++ LIE+ H+++ PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 545 TLFFRHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVR 604 Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KA 667 + ISRFKGLGEM A QL +T M+ + R L+ V++ T + LMG +A Sbjct: 605 ESAWTISRFKGLGEMNAEQLWDTTMNPDTRRLMPVQL--GGLDFDATIGRMTMLMGKGEA 662 Query: 668 DERFKFIQERASFI 681 R +++E+ + Sbjct: 663 AARRAWLEEKGNEA 676 >gi|261392093|emb|CAX49590.1| topoisomerase IV subunit B [Neisseria meningitidis 8013] Length = 661 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 353/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 AKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATAID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP+ +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VQIHEDGSLSVRDNGRGIPVGLHPE-EGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDEHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|262392780|ref|YP_003284634.1| DNA gyrase subunit B [Vibrio sp. Ex25] gi|262336374|gb|ACY50169.1| DNA gyrase subunit B [Vibrio sp. Ex25] Length = 805 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 230/566 (40%), Positives = 349/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E H + N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL +K GT+I F P + F + Sbjct: 121 SVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF +E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DEE + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + L+ K + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERT---MPVASFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|298369978|ref|ZP_06981294.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281438|gb|EFI22927.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 661 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 244/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VRIHNDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFSKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G DL RY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I K + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPKGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|284007066|emb|CBA72341.1| DNA gyrase subunit B [Arsenophonus nasoniae] Length = 805 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 228/579 (39%), Positives = 347/579 (59%), Gaps = 18/579 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 3 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCTDIIV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V+DNGRGIP + H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 63 TIHTDNSISVLDNGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ I Q + G+P +PL + RGT I F P + F Sbjct: 122 SVVNALSEKLSLVIRREGKIHEQTYQLGVPQAPLTIAGETEE-RGTYIRFWPSLETFKTV 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ + ++ E + F++ GG+K +++ N Sbjct: 181 TEFEYDILAKRLRELSFLNSGISIRLFDKRDNKE-------DHFHYEGGIKAFVEYLSRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F EK+G VE ++ W + + + N I +GGTH G R A+ Sbjct: 234 KTPIHPSVFYFSAEKEGI---NVEISMQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSYMDKEGYQKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTVV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ETLMNEKLVEYLLENPNDAKIVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPSLSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ H+++ Sbjct: 471 LITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 PPL+++ +G + Y D+E + L Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMNEYLISIALDNAALYT 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L K + + + R+KGLGEM QL ET M+ + R ++RV + + T Sbjct: 720 FEDALNWLSKESRRGLMVQRYKGLGEMNPEQLWETTMNPDTRHMMRVTVKDAI----ATD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A +++ Sbjct: 776 QLFTTLMGDAVEPRRAFIEENALKAENID 804 >gi|330431465|gb|AEC16524.1| DNA gyrase subunit B [Gallibacterium anatis UMN179] Length = 806 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 237/578 (41%), Positives = 354/578 (61%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SNQTSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHEDNSVSVQDDGRGIPVGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ R+ + Q + G P +PL + +K GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRREGHVHEQFYRLGEPQAPLAVIGE-SDKTGTTVRFWPSPSI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D F L K + ++L+ V + + F++ GG++ +++ Sbjct: 180 FSDT-EFQYEVLSKRLRELSFLNSGVSIRLIDLR-------TNRSDHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +N++ I S+ F TEK G VE A+ W + E + N I +GGTH +G Sbjct: 232 LNKNKNPIHSKPFYLNTEKDGI---GVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR + Y E K +++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RAAMTRTLNNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + YL++NP +A ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSVVESAVGERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +++ ++Q Sbjct: 409 KLADCQERDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVAALITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 H+++ PPL+++ +G + Y D++ + G Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDDAMTQYELAIALDG 566 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 20/147 (13%) Query: 542 TDADVDGAHIAS---LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 TD +D I LL ++ +L+E+ + +T+G + + + + Sbjct: 676 TDHALDFHFIEGSEYALLLKLGHQLRNLLEEG-AY--------VTRGERRL---NVSSFE 723 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + ++ K + + + R+KGLGEM QL ET MD R +L+V I + Sbjct: 724 QAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPEARRMLKVSIRDAV----AADQI 779 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 780 FTTLMGDEVEPRRDFIETNALHA-NLD 805 >gi|91228345|ref|ZP_01262273.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01] gi|269965275|ref|ZP_06179396.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B] gi|91188105|gb|EAS74409.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01] gi|269830076|gb|EEZ84304.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B] Length = 805 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 230/566 (40%), Positives = 349/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E H + N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEIHSE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G P +PL +K GT+I F P + F + Sbjct: 121 SVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDEREAD------KHDHFMYEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF +E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKIFHFNSERED--GISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DEE + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + + L+ K + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERT---MPVANFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|269799050|gb|ACZ43803.1| DNA gyrase subunit B [Moritella viscosa] Length = 726 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I Q + G P +P+ + + GT + F P + F + Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + YL++NP EA+ ++ +I+ S R RK R RK A+ LPGKL Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G G Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568 >gi|300311161|ref|YP_003775253.1| DNA topoisomerase IV subunit B [Herbaspirillum seropedicae SmR1] gi|300073946|gb|ADJ63345.1| DNA topoisomerase IV subunit B protein [Herbaspirillum seropedicae SmR1] Length = 662 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 249/674 (36%), Positives = 368/674 (54%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +++ +Y SSIR+L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 2 ATKKTSPSDYSESSIRVLKGLEPVKQRPGMY---TRTENPLHILQEVIDNASDEALGGYG 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151 I V+++ +G ++V D+GRGIPV HP+ T+EI+ T LHAGGKFD + Y S Sbjct: 59 KSIIVTMNADGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFDKGSGGAYAFS 117 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209 GGLHGVG+SV NAL+ L +TV R+ + + FS G + L+ + R+ + GTR+T Sbjct: 118 GGLHGVGVSVTNALATRLEITVWREGGVHTLAFSGGDVIEKLKSRPATRDDKKSGTRVTV 177 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L ++ +SKA L VK + K + + + + GL Sbjct: 178 WPDAKYFDS-PTIPMGELQRLLRSKAVLLPGVKVTLTNGK-------TGDSQSWQYDQGL 229 Query: 270 KTYLQTKLENRSLISSEIFTGKTEK------KGTHRGT-VEWAIAWCEENP-EITSYCNT 321 + YL +L + I + E+ G G W +AW EE SY N Sbjct: 230 RGYLMEQLAQTGSGETLIPLFEGEQFAGKDADGFAEGEGASWVVAWTEEGAVVRESYVNL 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K +AE+ + + ++++D+ +LS + +P+F Sbjct: 290 IPTSNGGTHESGLREGLFSAVKSFAEMHSLLPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 349 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V R + +L Q+ KL E VI++++ RLR ++ E + Sbjct: 350 GQIKERLNSRDAVRLVAGFSRPALELWLNQHVDYGKKLAELVIKQAQSRLRSAQKVEKKK 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SSGVAVL--PGKLTDCESSDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAW 467 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 +++ N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT Sbjct: 468 ETERDRLFANNEIHDIAVAIGVDPHGINDTPDLSGLRYGKICILSDADVDGSHIQVLLLT 527 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE ++ + PPL+R+ +G K +YA D+ + I ++ +K G + Sbjct: 528 LFFRHFPKLIENGNICVARPPLYRVDAPARGKKPVQKLYALDDGELEAIEDKLRKDGLKE 587 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 G ISRFKGLGEM A QL ET M+ + R LL + + ++ +++ N LMG +A Sbjct: 588 GAWSISRFKGLGEMNAEQLWETTMNPDTRRLLPISFGEPG--VQTSEERFNMLMGKGEAA 645 Query: 669 ERFKFIQERASFID 682 R +I+E + + Sbjct: 646 SRRAWIEEHGNEAE 659 >gi|254360771|ref|ZP_04976919.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia haemolytica PHL213] gi|261492363|ref|ZP_05988924.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|153091341|gb|EDN73315.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia haemolytica PHL213] gi|261311967|gb|EEY13109.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 810 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 234/586 (39%), Positives = 349/586 (59%), Gaps = 20/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ + +YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTEK-TGTSVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V +++ E E F + GG+K Y+ Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLTTEKDGI---GVEISLQWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 IE ++++ PPL+++ +G + Y D + + + G G Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLY 574 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 782 KLFSTLMGDEVEPRRDFIETNALYA-QLD 809 >gi|269799052|gb|ACZ43804.1| DNA gyrase subunit B [Moritella viscosa] Length = 700 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I Q + G P +P+ + + GT + F P + F + Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + YL++NP EA+ ++ +I+ S R RK R RK A+ LPGKL Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G G Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568 >gi|325519490|gb|EGC98871.1| DNA topoisomerase IV subunit B [Burkholderia sp. TJI49] Length = 660 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 239/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQSAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDTARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA D+ + IL++ +K G Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRDT 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVERMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|311105320|ref|YP_003978173.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8] gi|310760009|gb|ADP15458.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8] Length = 653 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 249/670 (37%), Positives = 356/670 (53%), Gaps = 43/670 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AGY I+V Sbjct: 2 ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHVVQEVIDNAADEALAGYGKQIQV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L +G ++V D+GRGIPV HP+ + +E++ T LHAGGKFD Y SGGLHG Sbjct: 59 TLHIDGSVSVEDDGRGIPVGLHPE-EHAPVVELVFTRLHAGGKFDKAGGGAYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRG---IPLSPLEKKEKVRNKRGTRITFRPDP 213 VG+SV NAL+ L V V R + F G PL+P ++ R K GTR+ PD Sbjct: 118 VGVSVTNALATRLEVVVWRDGAVNRLVFKGGDVAEPLAPYDQGG--RKKSGTRVRVWPDA 175 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L + +SKA L VK +K K + + GL+ YL Sbjct: 176 KYFDSPN-IPLGELTHLLRSKAVLLPGVKVSLVNEKTGDTKT-------WQYQDGLRGYL 227 Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328 L L+ E + G + +W +AW E+ SY N I T GG Sbjct: 228 SEALAGAELMVPFFEGEQYAGADHENFAEGEGAQWVVAWTEDGNAVRESYVNLIPTPAGG 287 Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 THESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K +L Sbjct: 288 THESGLREGLFSAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERL 347 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 S DA R V + D +L N KL E I +++ R R ++V ++ + Sbjct: 348 NSRDAVRLVGGFSKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVA 405 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 406 VLPGKLTDCESSDATRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRL 465 Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I D+ A+G D LRY ++ I++DADVDG+HI LLLT FY+ Sbjct: 466 FANNEIHDISVAIGVDPHGPGDTPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYKHFP 525 Query: 565 DLIEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 L+E ++F+ PPLFR+ QG + +Y DE + ++ +K G +G +SR Sbjct: 526 KLVEAGNVFVAKPPLFRLDVPAQGKRPARKIYCLDEGELEAAQDKLRKEGVREGAWAVSR 585 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM QL ET M+ + R LL V + +DT + LMG ++ +R +I+ Sbjct: 586 FKGLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPEDTTRMFDMLMGKGESSQRRAWIE 643 Query: 676 ERASFIDDVG 685 E+ + + + Sbjct: 644 EKGNLAE-LD 652 >gi|323496930|ref|ZP_08101958.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326] gi|323318004|gb|EGA70987.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326] Length = 805 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 227/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDCSVSVRDDGRGIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL + +K GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLRDERE------EDKNDHFMYEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E A+ + +LV++P EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 EQAMGEKLSEFLVEHPAEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 LE K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 DALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|206560814|ref|YP_002231579.1| DNA topoisomerase IV subunit B [Burkholderia cenocepacia J2315] gi|198036856|emb|CAR52756.1| topoisomerase IV subunit B [Burkholderia cenocepacia J2315] Length = 660 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 243/676 (35%), Positives = 363/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R + F+ G + PL + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKMAELGFAEGDVVKPLATQAVGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R T E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADSRSTDETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+++ PPLFR+ +G K +YA D+ + IL++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RDTQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|254251764|ref|ZP_04945082.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] gi|124894373|gb|EAY68253.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] Length = 660 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 238/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGDKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYDDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKLGELDYDATVA--RMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|220933197|ref|YP_002512096.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219994507|gb|ACL71109.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 807 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 227/565 (40%), Positives = 344/565 (60%), Gaps = 19/565 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + + YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 1 MTDPQQAKTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 N I+V + +G ++V D+GRGIPV+ HP+ +S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CNKIQVIIHSDGSVSVQDDGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L +T+ R + + Q + G+P +PL + GTR+ FRP Sbjct: 120 LHGVGVSVVNALSEWLELTIFRNSRVHRQVYRLGVPDAPLAEVGDT-ELTGTRVHFRPST 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF D F L K + ++L+ V+ S ++ E + F + GG++ ++ Sbjct: 179 EIFSDT-EFHYDILSKRLRELSFLNSGVRIQLSDERSGKE-------DVFEYQGGIRAFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + N++ + + ++ TVE A+ W + I + N I +GGTH + Sbjct: 231 EHLNRNKTPLHQNVIYCVADRDDI---TVEVALQWNDSYQENIFCFTNNIPQRDGGTHMA 287 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTRG+ +Y E K+ ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 288 GFRAALTRGLNQYMEAEGILKKQKVATTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSS 347 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRL 449 + + VE L D +L++NP +A + +I+ + R R+ RK A+ L Sbjct: 348 EVKAVVEGVLYDHLQSFLLENPGDAKVITAKIIDAARARDAARRAREMTRRKGALDVAGL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ + Sbjct: 408 PGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLS 467 Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + ++ L+ ALGC + LRY ++IIMTDADVDG+HI +LLLTFFY++M LIE Sbjct: 468 SAEVGTLITALGCGIGKDEFNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPVLIE 527 Query: 569 QKHLFLISPPLFRITQGTKSVYAHD 593 + H+++ PPL+++ +G + Y D Sbjct: 528 RGHVYIAQPPLYKVKKGKQEQYVKD 552 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++++ + + + R+KGLGEM QL ET M+A R LL+V+I + Sbjct: 722 FRQVMDWLLGEARRGLNVQRYKGLGEMNPEQLWETTMNAETRRLLQVKIEDAVR----AD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R +FI+ A ++ Sbjct: 778 EVFTTLMGDQVEPRREFIEANALTASNID 806 >gi|219870586|ref|YP_002474961.1| DNA gyrase subunit B [Haemophilus parasuis SH0165] gi|219690790|gb|ACL32013.1| DNA gyrase subunit B [Haemophilus parasuis SH0165] Length = 810 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 236/586 (40%), Positives = 353/586 (60%), Gaps = 20/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ ++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 1 MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 N I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CNDIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL + GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETEK-TGTTVRFWPSY 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ A L K + ++L+ V ++ E E F + GG++ Y+ Sbjct: 179 DIFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE-------EHFKYEGGIRAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E +++I F TEK G +E ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKNVIHPTPFYLSTEKDGI---GIEISMQWNDSFNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y E + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + +E+++ + YL++NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRNPLESSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R +Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 IE+ ++++ PPL+++ +G + Y D ++ G Sbjct: 529 IERGYVYIAQPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLY 574 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + ++ K + + I R+KGLGEM QL ET MD R +L Sbjct: 714 VQRGERQQSIESVAE---AIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKML 770 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A + ++ Sbjct: 771 QVTITDAI----AADKLFTTLMGDEVEPRRDFIENNALYA-NLD 809 >gi|145297128|ref|YP_001139969.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|142849900|gb|ABO88221.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida A449] Length = 804 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 232/575 (40%), Positives = 354/575 (61%), Gaps = 18/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIL 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +G ++V DNGRGIPV+ H + +S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VKIHSDGSVSVRDNGRGIPVDMHEE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD+L +T+ R ++ Q + G P +PL++ + GT + F P P IF D Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPTIFTD 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L K + ++L+ V +++ E F + GG+K +++ + Sbjct: 181 TL-YHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------VHFCYEGGIKAFVEYLNQ 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I ++F TE+ G VE A+ W + + + N I +GGTH G R A Sbjct: 233 NKTPIHPKVFHFSTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K + DD+ + ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRTLNTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE A+ + +L++NP +A ++ +I+ + R RK RE RK A+ LPGKLA Sbjct: 350 VEQAMGEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + LRY +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE+ + G Sbjct: 530 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 564 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + + ++ GK I I R+KGLGEM QL ET MD R +L Sbjct: 707 IKRGEKV---KPIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 763 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I+ + + LMG + R FI+ A + ++ Sbjct: 764 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 803 >gi|289207191|ref|YP_003459257.1| DNA gyrase subunit beta [Thioalkalivibrio sp. K90mix] gi|288942822|gb|ADC70521.1| DNA gyrase, B subunit [Thioalkalivibrio sp. K90mix] Length = 810 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 235/573 (41%), Positives = 351/573 (61%), Gaps = 18/573 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD+S IR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + IEV+ Sbjct: 10 ETYDSSQIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIEVT 69 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRGIPV+ H + KS E+ILT LHAGGKFDN++Y++SGGLHGVG+S Sbjct: 70 IHEDNAVSVSDNGRGIPVDIHEE-EGKSAAEVILTVLHAGGKFDNNSYKVSGGLHGVGVS 128 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+EL + + R Q + G+P +PL ++ GTRI FRP +IF D Sbjct: 129 VVNALSEELRLEIHRAGERHEQVYHLGVPDAPLAVAGST-DRTGTRIWFRPSDEIFTDI- 186 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + ++L+ V+ ++ E E F F GG++ +++ + + Sbjct: 187 EFHYEILAKRLRELSFLNSGVRITLRDQRDNRE-------ETFLFEGGIRAFVEHLNQKK 239 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + ++ + VE A+ W + I Y N I +GGTH +G R ALT Sbjct: 240 TALHPTVIYANQTREDDY--VVEVALQWNDSYQENIFCYTNNIPQRDGGTHMAGFRAALT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + +Y E K ++ DD+ +LSV + +P+F+ QTK KLVS + + VE Sbjct: 298 RTVNQYLEKEGLIKKAKVATAGDDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPIVE 357 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + L D ++L++NP EA + + V+E + R RK RE RK A+ LPGKLADC Sbjct: 358 SVLSDALTNFLLENPPEAKAITDKVLEAARAREAARKAREVTRRKGALDIAGLPGKLADC 417 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +++ + ++ L Sbjct: 418 QEKDPAHSELYLVEGDSAGGSAKQGRDRHFQAILPLKGKILNVERARFDRMLGSAEVGTL 477 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALGC + +Y + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+++ Sbjct: 478 ITALGCGIGKDEYDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVYIA 537 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL++I +G + Y DE +I+ G Sbjct: 538 QPPLYKIKRGKREQYVRDEAEMGEIVVSLALDG 570 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + +E + G+ + R+KGLGEM QL ET M+ R LL+V + + Sbjct: 725 FSEAMEWLLQEGRRGLATQRYKGLGEMNPEQLWETTMNPETRRLLQVRVEDAIR----AD 780 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ RA ++V Sbjct: 781 EIFTTLMGDQVEPRRDFIESRALSAENVD 809 >gi|269799054|gb|ACZ43805.1| DNA gyrase subunit B [Moritella viscosa] Length = 656 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDVV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHEDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I Q + G P +P+ + + GT + F P + F + Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + YL++NP EA+ ++ +I+ S R RK R RK A+ LPGKL Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G G Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDGAG 568 >gi|15603341|ref|NP_246415.1| DNA gyrase subunit B [Pasteurella multocida subsp. multocida str. Pm70] gi|12721859|gb|AAK03560.1| GyrB [Pasteurella multocida subsp. multocida str. Pm70] Length = 806 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 233/565 (41%), Positives = 351/565 (62%), Gaps = 19/565 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + +NY A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGYA Sbjct: 2 SNNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYAK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DITVTIHTDNSVSVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P +PL + ++ GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V + ++ F++ GG++ +++ Sbjct: 180 FNNI-EFEYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ I + F TEK G VE ++ W + + + N I +GGTH +G Sbjct: 232 LNRNKNPIHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y + K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNNYMDNEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y E LRY +IIMTDADVDGAHI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEE 595 H+++ PPL+++ +G + Y D+E Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDE 553 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + + R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAIEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A ++ Sbjct: 778 LLFTTLMGDEVEPRREFIESNALHA-NLD 805 >gi|33596500|ref|NP_884143.1| DNA topoisomerase IV subunit B [Bordetella parapertussis 12822] gi|33602205|ref|NP_889765.1| DNA topoisomerase IV subunit B [Bordetella bronchiseptica RB50] gi|33566269|emb|CAE37180.1| topoisomerase IV subunit B [Bordetella parapertussis] gi|33576643|emb|CAE33721.1| topoisomerase IV subunit B [Bordetella bronchiseptica RB50] Length = 670 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 249/668 (37%), Positives = 353/668 (52%), Gaps = 39/668 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ Y +SIR+L+GLEPVR RPGMY T + H+ EVIDNA DE +AGY I+V Sbjct: 19 ATPRYTEASIRVLKGLEPVRQRPGMY---TRTENPLHIVQEVIDNAADEALAGYGKQIQV 75 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHG 156 +L G+G ++V D+GRGIPV HP+ N +E++ T LHAGGKFD Y SGGLHG Sbjct: 76 TLHGDGSISVEDDGRGIPVGLHPE-ENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHG 134 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-EKVRNKRGTRITFRPDPKI 215 VG+SV NAL+ L V V R + F+ G + L E R K GTR+ PD K Sbjct: 135 VGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEGGRKKSGTRVRVWPDAKY 194 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F A L + +SKA L VK +K + + + GL+ YL Sbjct: 195 FDS-PAIPMAELTHLLRSKAVLLPGVKVSLVNEK-------TGDTRTWQYQEGLRGYLAE 246 Query: 276 KLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTH 330 L L+ + + G +W +AW E+ SY N I T GGTH Sbjct: 247 ALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTH 306 Query: 331 ESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR L +K +AE + + + ++ +D+ A +LS + +P+F GQ K +L S Sbjct: 307 ESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVFARASFVLSAKVLDPQFQGQIKERLNS 366 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 DA R V + D +L N KL E I +++ R R ++V ++ + L Sbjct: 367 RDAVRLVGGFAKSALDLWLHSNVEYGKKLAELAIRQAQARQR--SAQKVEKRKSSGVAVL 424 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC + A TE+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 425 PGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFA 484 Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 N +I D+ A+G E D LRY ++ I++DADVDG+HI LLLT FY+ L Sbjct: 485 NNEIHDISVAIGVDPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKL 544 Query: 567 IEQKHLFLISPPLFRIT---QGT---KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 IE ++F+ PPLFR+ QG + +Y D + ++ +K G + +SRFK Sbjct: 545 IEAGNVFVARPPLFRVDVPAQGKRPARKIYCLDAGELEAAQDKLRKEGVRESAWSVSRFK 604 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677 GLGEM QL ET M+ + R LL V + DT + LMG ++ +R +I+E+ Sbjct: 605 GLGEMNPEQLWETTMNPDTRRLLPVGYGD--LTPGDTTRMFDMLMGKGESSQRRAWIEEK 662 Query: 678 ASFIDDVG 685 + + + Sbjct: 663 GNLAE-LD 669 >gi|152977818|ref|YP_001343447.1| DNA gyrase subunit B [Actinobacillus succinogenes 130Z] gi|150839541|gb|ABR73512.1| DNA gyrase, B subunit [Actinobacillus succinogenes 130Z] Length = 811 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 232/570 (40%), Positives = 352/570 (61%), Gaps = 24/570 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ ++NY A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SENTAENYGAGSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHEDNSISVQDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P +PL+ GT + F P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLKIIGDSEK-TGTTVHFWPSSAI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F+ L K + ++L+ V +++ + + F++ GG++ +++ Sbjct: 180 FTKTV-FEYDILKKRLRELSFLNSGVSIKLFDERD-------GKNDHFHYEGGIQAFVEF 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK+G VE A+ W + I + N I +GGTH +G Sbjct: 232 LNQNKTPIHQKPFYFTMEKEGI---GVEVALQWNDSYNENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQN-------KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR + Y + + K + DD V ++SV + +P+F+ QTK KL Sbjct: 289 RGALTRTLNAYMDKSGLNKKGKSDKDKVDTSGDDAREGLVAVISVKVPDPKFSSQTKDKL 348 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 VS + + VE+A+ + YL +NP +A + ++E + R RK RE+ R+ + Sbjct: 349 VSSEVKGAVESAMNERLQEYLEENPNDAKIIATKIVEAARAREAARKAREMTRRKGVLDI 408 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K Sbjct: 409 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 468 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q++ L+ ALGC R +Y E LRY K+IIMTDADVDG+HI +LLLTFFY++M + Sbjct: 469 MLSSQEVGTLITALGCGIGRDEYNPEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPE 528 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEE 595 LIE+ ++++ PPL+++ +G + Y D+E Sbjct: 529 LIERGYVYIAQPPLYKVKKGKQEQYLKDDE 558 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + + + + R+KGLGEM QL ET MD R +L+V I + + Sbjct: 727 FEEGINWLVAQSRRGLTVQRYKGLGEMNPEQLWETTMDPEARHMLQVTIKDAV----EAD 782 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 783 QLFTTLMGDEVEPRRDFIETNALRA-NLD 810 >gi|28211416|ref|NP_782360.1| DNA topoisomerase IV subunit B [Clostridium tetani E88] gi|28203857|gb|AAO36297.1| DNA gyrase subunit B [Clostridium tetani E88] Length = 651 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 227/658 (34%), Positives = 349/658 (53%), Gaps = 36/658 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NYD S++ LE LEPVR+RPGMYIG T K LHH E++DN++DE+ GY + + L+ Sbjct: 10 NYDVSTLTSLEKLEPVRVRPGMYIGSTGAKGLHHCVWEILDNSIDEISNGYGDTATIILN 69 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +T++DNGRGIP HP KS +E++ T LH G KF+NS Y+ SGGLHGVG SVV Sbjct: 70 KDKSVTIMDNGRGIPTGIHP-IKKKSGIEMVFTELHTGSKFNNSVYKTSGGLHGVGASVV 128 Query: 163 NALSDELHVTVARQNTIFSQKFSR-----------GIPLSPLEKKEKVRNKRGTRITFRP 211 NALS L V V++ I+ Q+F G+P+ +E K ++ GT+I+F P Sbjct: 129 NALSKWLEVEVSQNGNIYKQRFEYAYDKKLKKNMPGMPIGQVEIVGKSKS-TGTKISFLP 187 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D +F F + + Q A+ + + + ++ ++E++ GL Sbjct: 188 DDDVFSTT-DFKFEIIDERLQELAFQNQGITLKFIDNR-----GEETVEKEYHSKRGLLD 241 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCE-ENPEITSYCNTILTDEGGT 329 ++ E++++I + + E++ R E I + + I Y N I T E GT Sbjct: 242 FIDYLNESKTIIHNPPILFEGEREIKGIRIHGEVCIQFTDSTTENIAGYVNNIPTTESGT 301 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 HE+G ++ +TR K++A+ + DDL I+ V I P F GQTKTKL Sbjct: 302 HETGFKMGMTRAFKEWAKKLNLIKDKDKDFEGDDLREGMTAIVKVKINNPIFEGQTKTKL 361 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 + +A + ++ N AT ++ +E + R + +K E RK + Sbjct: 362 GNNEAYTLMNELTYTKLCEWIEDNKETATLIMNNALEVATRREKIKKINEAERKKVGKGT 421 Query: 448 -RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L GK+A C+ E +VEGDSAGGSAKQAR+R Q ++P +GKI+N E Sbjct: 422 APLAGKVAVCTLRNPKLCEFIVVEGDSAGGSAKQARDRKFQTIMPSKGKIMNTEKQKIEN 481 Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 + ++++ A+G YREEDL+Y K+IIM+DADVDG HI +L +T+ Y+ M L Sbjct: 482 VIGSEELKIFNTAIGTGVLENYREEDLKYHKIIIMSDADVDGFHIRTLWMTYIYRYMKQL 541 Query: 567 IEQKHLFLISPPLFRITQGTK----SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE 622 I HL++ PPL+R+ + K S YA++++ +KI +E K + R+KGLGE Sbjct: 542 ITNGHLYVAMPPLYRVYKNLKGKEISKYAYNDDDLEKIKKELGK----GTNVQRYKGLGE 597 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M QL ET ++ R L ++ I+ + ++ LMG + R K+I + F Sbjct: 598 MNPDQLWETTLNPESRILHKITIDD----AAKAEKMVSLLMGDVVEPRKKYIYKYCKF 651 >gi|53802866|ref|YP_115417.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath] gi|53756627|gb|AAU90918.1| DNA gyrase, B subunit [Methylococcus capsulatus str. Bath] Length = 804 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 227/573 (39%), Positives = 355/573 (61%), Gaps = 19/573 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 + + YD+S I+IL+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY Sbjct: 2 TTKPNEYDSSHIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAMAGYCKR 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V++ + +TV D+GRGIPV+ HP+ +S E+I+T LHAGGKFD++ Y++SGGLHG Sbjct: 62 ICVTVHEDESVTVSDDGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+ L + + R + Q++ G PL+PL + + GT + F+P P+IF Sbjct: 121 VGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTVRFKPSPQIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F L K + ++L+ V+ + + E F F GG++ +++ Sbjct: 180 SNI-EFHYEILAKRLRELSFLNSGVRIELEDKRS-------GKNEVFEFEGGIRAFVEHL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N++ + ++F + E+ G VE A+ W + + Y N I +GGTH +G R Sbjct: 232 NKNKTPLFDKVFHLQAERDGV---GVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + +Y E K+ ++ + DD +LSV + +P+F+ QTK KLVS + + Sbjct: 289 AALTRTVNQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE+ + + + +L++NP A + V++ + R RK R RK+A+ LPGK Sbjct: 349 SVVESVMAEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +ELFIVEGDSAGGSAKQ R+R +QA+LPL+GKILNV A +K+ ++++ Sbjct: 409 LADCQEKDPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLSSEE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+++ H Sbjct: 469 VGTLITALGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVDRGH 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +++ PPL+++ +G + Y D+ + L + Sbjct: 529 VYIAQPPLYKVKKGRQEHYVKDDAELNEYLLQL 561 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 9/106 (8%) Query: 585 GTKSVYAHDEEHK-----QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 G S ++E + +++ + K I R+KGLGEM QL ET +DAN R Sbjct: 702 GDTSTVCFNDERRPVRSFKELFDWMLTEAKKGQHIQRYKGLGEMNPEQLWETTLDANTRR 761 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V I + + LMG + + R +FI+ A + ++ Sbjct: 762 LLQVRIEDAI----AADEVFTTLMGDQVEPRREFIERNALQVANLD 803 >gi|307133244|ref|YP_003885260.1| DNA gyrase subunit B [Dickeya dadantii 3937] gi|306530773|gb|ADN00704.1| DNA gyrase subunit B [Dickeya dadantii 3937] Length = 803 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 344/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ I Q++ G P +PL + F P + F + Sbjct: 121 SVVNALSEKLELVIRREGKIHRQEYRHGEPQAPLSVTGDADTTGT-TVRFWPSLETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F+ L K + ++L+ V ++E + + F++ GG+K +++ N Sbjct: 180 VEFEYEILAKRLRELSFLNSGVSIRLRDERE------ENKADHFHYEGGIKAFVEYLNRN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F EK VE A+ W + I + N I +GGTH +G R A+ Sbjct: 234 KTPIHPQVFYFSAEKDDI---GVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + D YL++NP +A ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESLMNDRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ H+F+ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEAMDQY 556 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + I R+KGLGEM QL ET MD R +LRV + + Sbjct: 718 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAI----AAD 773 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++ Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANID 802 >gi|260774984|ref|ZP_05883884.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450] gi|260609074|gb|EEX35233.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450] Length = 805 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 347/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDCSVSVRDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL + +K GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDERE------EDKSDHFMYEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIEKVFHFNAERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + +LV++P EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESVMGEKLSEFLVEHPTEAKAVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 EALNWLVKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|167470305|ref|ZP_02335009.1| DNA topoisomerase IV, B subunit [Yersinia pestis FV-1] Length = 593 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 243/611 (39%), Positives = 342/611 (55%), Gaps = 23/611 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y+A +I +L GLEPVR RPGMY TD +HL EVIDN++DE +AG+A I+V Sbjct: 2 TESSYNADAIEVLSGLEPVRRRPGMY---TDTSRPNHLGQEVIDNSVDEALAGHARRIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L + L V+D+GRG+PV+ HP+ +E+IL LHAGGKF N Y+ SGGLHGVGI Sbjct: 59 ILHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALS + VTV R + I+S F G + L+ + GT + F PD F Sbjct: 118 SVVNALSKRVEVTVRRDSQIYSIAFENGDKVQDLQVIGTCGKRNTGTSVHFWPDVSFFDS 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F +RL + ++KA L V+ + E + + + GL YL + Sbjct: 178 PR-FSVSRLSHLLKAKAVLCPGVEIVFKDQVNNTE-------QRWCYADGLTDYLMEAVN 229 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRV 336 + F G ++WA+ W E E SY N I T +GGTH +GLR Sbjct: 230 GFITLPEAPFVGSFAGDTE---AIDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 286 Query: 337 ALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 L ++ + E R + + +DD+ +LSV +++P+FAGQTK +L S Sbjct: 287 GLLDAMRDFCEYRNILPRGVKLSADDIWERCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 346 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 V ++D F +L QN A +L E I ++ R+R ++V RK LPGKLAD Sbjct: 347 VSGVVKDAFSLWLNQNVQAAEQLAELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLAD 404 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C+ TELF+VEGDSAGGSAKQAR+R QA++PL+GKILN S+++ +Q++ D Sbjct: 405 CTSQDLSLTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 464 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G S+ LRY KV I+ DAD DG HIA+LL F + L+ H+++ Sbjct: 465 ISVAIGIDPDSEDL-SQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVRNGHVYVA 523 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA DEE K +LE+ K+ +GK + RFKGLGEM QL+ET +D Sbjct: 524 MPPLYRIDLGKEVFYALDEEEKAGVLEQLKRK-RGKPNVQRFKGLGEMNPLQLRETTLDP 582 Query: 636 NKRTLLRVEIN 646 N R L+++ I+ Sbjct: 583 NTRRLVQLTIS 593 >gi|323359915|ref|YP_004226311.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] gi|323276286|dbj|BAJ76431.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] Length = 689 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 223/687 (32%), Positives = 339/687 (49%), Gaps = 62/687 (9%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A +++LEGLE VR RPGMYIG TD + L H E+IDN++DE +AG+ + I++ Sbjct: 2 TSEYSAHHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGHGSRIDIV 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G + V D RGIPV+ P+ + +E++ T LHAGGKF +Y SGGLHGVG S Sbjct: 62 LHADGSVEVRDRARGIPVDVEPR-TGLTGVEVVFTKLHAGGKFGGGSYAASGGLHGVGAS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------RNK 202 VVNALS+ L V V R ++ F RG P R Sbjct: 121 VVNALSERLDVEVDRAGKTYAMSFHRGEPGQFAGDTPDSEFTPFERSSELRVIGKAPRGV 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GTRI + D +IF A F L++ + A+L ++ ++ + Sbjct: 181 TGTRIRYWADRQIFTKDAAFGLDELVQRVRQTAFLVPGLEIVVLDER-----GDEKVETS 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVEWAI 306 + F GG+ + + + ++ + TG + V+ A+ Sbjct: 236 YRFDGGISEFAEFLAPDAAVTDTWRLTGTGTFTETVPVLQPGGSMIPTEVHRECEVDIAV 295 Query: 307 AWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SIISDDL 362 W T S+ N I T +GGTH+ G L + ++ E K + I DDL Sbjct: 296 RWGTGYDTTTRSFVNIIATPKGGTHQQGFEQGLMKILRAQVEQNARKLKVGNDKIEKDDL 355 Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIEATKL 418 + +L+V + EP+F GQTK L + ++ V + ++ + + +L Sbjct: 356 LAGLTAVLTVRLPEPQFEGQTKEVLGTPAVRQIVASVVQKELAARFASPKRDDKAQTAQL 415 Query: 419 LEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 LE ++ + R+ R +E RK A+ LP KL DC N + +ELFIVEGDSA G+ Sbjct: 416 LEKIVSEMKARISARTHKETQRRKNALESSSLPAKLVDCRSNDVNDSELFIVEGDSALGT 475 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEK 537 AK ARN QA+LP+RGKILN A + N + ++Q +G + + RY K Sbjct: 476 AKLARNSEYQALLPIRGKILNTQKASISDMLGNAECASIIQVIGAGSGRSFDLSAARYGK 535 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYA 591 +I+M+DADVDGAHI +LLLT F++ M L+E+ +F PPL R+ ++ +++Y Sbjct: 536 IILMSDADVDGAHIRTLLLTLFFRYMRPLVEEGRVFAAVPPLHRVVVMNPGSKPNETIYT 595 Query: 592 HDEEHKQKILEEFKKHGKGKIE--ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649 + E+ +L + K+ K + + R+KGLGEM A QL T MD RTL RV + Sbjct: 596 YSEQELHNLLTKLKRSNKR-WQEPVQRYKGLGEMDADQLATTTMDRAGRTLRRVRVQD-- 652 Query: 650 NSLKDTQDSINKLMGTKADERFKFIQE 676 ++ + LMG+ R +FI + Sbjct: 653 --MEAAASVFDLLMGSDVAPRREFIID 677 >gi|296313483|ref|ZP_06863424.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC 43768] gi|296840002|gb|EFH23940.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC 43768] Length = 661 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 242/672 (36%), Positives = 349/672 (51%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 TKKTQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ Y SGGL Sbjct: 59 VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ + F+ G + PL + K GT + PD Sbjct: 118 HGVGVSVTNALSTRLEVTVKREGKVHRIVFAGGDVIEPLTEVGKCAVKDSGTEVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 178 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEARTQTWHYPDGLKSYL 233 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 234 TDLIADAQEAVPIFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 294 GTHEAGLKQAVFNAVNNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 353 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 354 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 412 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 472 LFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 531 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 532 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVRETAYSI 591 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T+D KLMG +A R + Sbjct: 592 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETRDIFVKLMGKGEAAARRAW 649 Query: 674 IQERASFIDDVG 685 ++ + + Sbjct: 650 MEREGDTAE-LD 660 >gi|148980121|ref|ZP_01815901.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3] gi|145961422|gb|EDK26728.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3] Length = 805 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 232/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I V Sbjct: 2 SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVRDDGRGIPTEIHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL ++ GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRFWPSEETFSNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ ++ N Sbjct: 180 L-FHYDILAKRLRELSFLNSGVSIKLIDERE------EDKSDHFMFEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ TVE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E A+ + +L++NP EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 EQAMGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 EALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVSNLD 804 >gi|271968328|ref|YP_003342524.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270511503|gb|ACZ89781.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 690 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 235/694 (33%), Positives = 335/694 (48%), Gaps = 56/694 (8%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S Y A + +LEGLE VR RPGMYIG TD + L H E++DN +DE +AGY Sbjct: 1 MTAVSVETGYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIVDNGVDEALAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + IEV L +G + V DNGRGIPV+ PK + +E++ T LHAGGKF +Y SGGL Sbjct: 61 DRIEVELHADGSIEVRDNGRGIPVDVEPK-SGLAGVELVYTKLHAGGKFGGGSYGASGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-----LSPLEKKEK----------V 199 HGVG SVVNALS L V V R I F RG+P P K +K Sbjct: 120 HGVGASVVNALSSRLDVEVDRDGQIHEISFRRGVPGVFDGDGPTAKFKKKSGLRDGGKLA 179 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 R GTR+ F D +IF +A + + A+L + + Sbjct: 180 RKVTGTRVRFWVDHQIFLPEAEVSLDEIHVRLRQTAFLVPGLTLAVRDSR-----GEEAV 234 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTVE 303 +EEF+F GG+ + + + ++ G + TV+ Sbjct: 235 EEEFHFDGGISEFTEFLARDEAVCQVLRLQGVGHFHETVPVLDDLGHMTPTEVQRELTVD 294 Query: 304 WAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISD 360 A+ W + S+ N I T +GGTH +G AL R + + T+ + + + Sbjct: 295 VALRWGKGYDTTVRSFVNVIATPKGGTHVNGFERALVRTLNEQLRETRLLKNGDAPVSRE 354 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D++ G+++V + EP+F GQTK L + A R V + + L Sbjct: 355 DILEGLTGVVTVRVPEPQFEGQTKEVLGTSAASRIVSHVVSRELKELFTNPSRALKPQLR 414 Query: 421 WVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 +E+ R + RKTA+ LP KL DC + +ELFIVEGDSA Sbjct: 415 AALEKIVAAAKARIAAREHRDNQRRKTALENSALPAKLVDCRSDDVDRSELFIVEGDSAL 474 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 G+A+ AR+ QA+LP+RGKILNV A + N + ++Q +G + + E RY Sbjct: 475 GTARAARDSEFQALLPIRGKILNVQKASVADMLKNTECAAIIQVIGAGSGRSFDIEAARY 534 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT------KSV 589 KVI+M DADVDGAHI LLLT F++ M ++ +F PPL RI K V Sbjct: 535 GKVILMADADVDGAHIRCLLLTLFHRYMRPMVAAGRVFAAVPPLHRIEVTNPGRGQGKYV 594 Query: 590 YAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 Y + + ++L + ++ GK K + R+KGLGEM A QL ET M+ RTL RV I Sbjct: 595 YCYSDAELHRVLRDLERRGKRWKDPVQRYKGLGEMDADQLAETTMEPRHRTLRRVRIED- 653 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +++ + + LMG+ R +FI A+ +D Sbjct: 654 ---IEEAERIFDLLMGSDVAPRREFIVGSAAEVD 684 >gi|59710619|ref|YP_203395.1| DNA gyrase subunit B [Vibrio fischeri ES114] gi|59478720|gb|AAW84507.1| DNA gyrase, subunit B [Vibrio fischeri ES114] Length = 805 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 227/566 (40%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I Q + G P +PL K + GT+I F P + F + Sbjct: 121 SVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F + GG++ ++Q N Sbjct: 180 V-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E++ +VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMAEY 556 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L K + + R+KGLGEM QL ET MD R +++V IN + Sbjct: 720 FEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALRVSNLD 804 >gi|315178623|gb|ADT85537.1| DNA gyrase, subunit B [Vibrio furnissii NCTC 11218] Length = 805 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 350/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R + +Q + G+P +PL ++ GT + F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +++ F + GG++ ++ N Sbjct: 180 -EFHYEILAKRLRELSFLNSGVSIKLVDEREDN------KQDHFMYEGGIQAFVNHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKVFHFNSERED--GISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTYMDKECYTKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLNDFLAENPSEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DEE + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEEAMNQY 556 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ L+ K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQ---PVASFAAALDWLIKESRRGLSVQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I+ + + LMG + + R FI+ A + ++ Sbjct: 765 QVTIDDAVG----ADELFTTLMGDQVEPRRAFIENNALKVANLD 804 >gi|297539210|ref|YP_003674979.1| DNA topoisomerase [Methylotenera sp. 301] gi|297258557|gb|ADI30402.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera sp. 301] Length = 661 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 239/671 (35%), Positives = 351/671 (52%), Gaps = 42/671 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDA S+++L GLEPVR RPGMY T ++ H+ EVIDNA DE + G+A I+V Sbjct: 2 AEKEYDADSVKVLRGLEPVRARPGMY---TRTESPTHIVQEVIDNAADEALGGHATTIQV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155 ++ +G + V DNGRGIPVE PK + +E++ LHAGGKFD NS+Y SGGLH Sbjct: 59 TIFKDGAVEVSDNGRGIPVEI-PKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214 GVG+SV NALS L VTV R + S F G ++PL + K + GT + PDPK Sbjct: 118 GVGVSVTNALSTRLDVTVKRDGKVHSLSFENGNCVTPLTETGKCLKKDTGTTVKCWPDPK 177 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F +L + +SKA L V S E E+ + + GL YL Sbjct: 178 YFDS-PKVSLQQLEHLIKSKAVLLRGVSVTLS-----IEGNDGFEERSWTYVDGLPQYLD 231 Query: 275 TKLENRSLISSEI--------FTGKTEKKGTHRGT-VEWAIAWCEENPEITSYCNTILTD 325 + R E F G +G WA+++ SY N I T Sbjct: 232 ELIGEREYEDDETPIPIISGEFYHHENTDGISKGEGAIWALSFGSGGGRGESYVNLIPTL 291 Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHE+G+R + +K + E +R + + S+D+ + +L+ + +P+F GQTK Sbjct: 292 SGGTHEAGMRNGVFEAVKSFMEHHSMMQRGVKVSSEDVWNNVCYVLAAKVLDPQFQGQTK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 KL + DA + V +A++ + +L QN A ++ + V + R + ++ E + + I Sbjct: 352 EKLTNRDAMKMVASAVKPYMETWLSQNVDHAKRISDLVNRSAAARNKSTQKIEKRKSSGI 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 +P KL DC ELF+VEGDSAGGSAK RN Q++LPLRGK+LN + Sbjct: 412 N--LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDA 469 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +I N ++ D+ ALG + D LRY K+ I++DADVDG+HI LLLT + Sbjct: 470 GRIFGNSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLR 529 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKI 612 LIE+ H+++ PPL+RI QG + +Y D+ K +E+ K+ G + K+ Sbjct: 530 HAPKLIERGHVYISQPPLYRIDVPAQGKSKPLRKIYVSDDSEKMSTIEKLKREGIAEEKL 589 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671 I RFKGLGEM QL ET + + R L++V + + + + LM + R Sbjct: 590 GIQRFKGLGEMNPEQLWETTLCPDTRRLVQVRLPEGEVAGAL--KMFDMLMAKNESAARK 647 Query: 672 KFIQERASFID 682 ++I+ R + ++ Sbjct: 648 EWIERRGNDVE 658 >gi|241759917|ref|ZP_04758017.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114] gi|241319925|gb|EER56321.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114] Length = 674 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 351/672 (52%), Gaps = 38/672 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++ Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 15 TKNNQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATEID 71 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGL 154 V + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ Y SGGL Sbjct: 72 VRIHDDGSLSVHDNGRGIPVGLHP-VEGVPVVELVFTRLHAGGKFNKKDGGSAYAFSGGL 130 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R+ I F+ G + PL + K GT + PD Sbjct: 131 HGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAEVGKCAVKDSGTEVRVWPDG 190 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V+ + + + +++P GLK+YL Sbjct: 191 KYFESPN-YSIPELERLLRAKAVLLPGVRVSLT---RPVKGEDEAHTQTWHYPDGLKSYL 246 Query: 274 QTKLENRS-----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 + + + + +A+ W EE SY N I T G Sbjct: 247 TDLIADAQEAVPLFSCENYISDDHNGDFSIGEGAAFALTWLEEGSCANESYVNLIPTPLG 306 Query: 328 GTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHE+GL+ A+ + + L R + + SDD+ +LS + +P+F GQTK K Sbjct: 307 GTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTAFVLSARVLDPQFQGQTKDK 366 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L + DA + V DP + +L QN K+ E I +++ R+R +++ +K Sbjct: 367 LTNRDALKLVAAVSGDPLELWLNQNVDFGKKIAELAIRQAQARMRSV--KKIEKKKGSGV 424 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN ++ Sbjct: 425 AVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLNSFEVHPDQ 484 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 485 LFGNAEIHDISVAIGVDPHGINDNPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHF 544 Query: 564 YDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKGK--IEI 614 L+ H+++ PPLFR+ QG + YA D+ ILE +K G + I Sbjct: 545 PKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDSILERLQKEGVKETAYSI 604 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM QLK+T M + R LL+V+I + + +T D KLMG +A R + Sbjct: 605 SRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPEGADD--ETHDIFVKLMGKGEAAARRAW 662 Query: 674 IQERASFIDDVG 685 +++ + + Sbjct: 663 MEKEGDTAE-LD 673 >gi|238063681|ref|ZP_04608390.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149] gi|237885492|gb|EEP74320.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149] Length = 703 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 224/681 (32%), Positives = 336/681 (49%), Gaps = 52/681 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A + LEGL+ VR RPGMYIG TD + + HL +E++DN+ DE +AG+A IEV L Sbjct: 27 YGADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATRIEVILHA 86 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIP + H K S +E++LT LHAGGKF S Y+ SGGLHGVG S VN Sbjct: 87 DGSVQVDDDGRGIPTDVHAK-SGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 145 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------------RNKRGTRI 207 ALS VTV R + + F G+P + + GT I Sbjct: 146 ALSRRFDVTVRRGGKVHAMSFQHGVPGAFAGPGPDAAFTPGPGLQIVGAMKRGQRTGTSI 205 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 + D + F A DA + ++ A+L V P +E F+FP Sbjct: 206 RYWHDARYFETGASLDAEAVRLKLRNTAFLVPGVSYLLRD-----HTGEEPVEETFHFPN 260 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIAWCEEN 312 GL ++ S E R VE A W Sbjct: 261 GLTDMVEFLAPAGDRPVSGTLLVTGEGTYRENAADANGVMQSNVQRRAEVEIAFRWGTGY 320 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVG 368 + NTI GGTH G AL R + A + + + DD++ Sbjct: 321 ERTVECFTNTIRNAHGGTHRKGFERALARALADAARAARGLLRPKEDAPTLDDVLEGMTA 380 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERS 426 ++ V I EP+F QTK +L + + ++ + +L + EA +L+ +++ + Sbjct: 381 VVHVRIPEPQFTSQTKDELSTAGITKVLQGLVEAHVKAWLEDRRTKAEARTVLQKIVDAA 440 Query: 427 EERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 RL +++Q++ RKTA+ +P KL DC + +ELFIVEGDSA G+ + AR+ Sbjct: 441 RVRLTQKQQKDAARRKTALEGASMPAKLVDCRASGIDRSELFIVEGDSALGTGRLARSAE 500 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LP+RGKILNV A +++ +N + +VQ LG + + +RY +V+IM DAD Sbjct: 501 YQALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLASMRYGRVLIMADAD 560 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHKQKILE 602 VDGAHI +LL+T F + M LIE L+ PPL +IT + +++Y + + + + Sbjct: 561 VDGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTIYTYTQAEMEATVR 620 Query: 603 EFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 + +K G+ + I RFKGLGEM A +L ET M+ R + R+ ++ + + + Sbjct: 621 KLEKAGRQIVTPIPRFKGLGEMDADELWETTMNPATRAVRRITLDD----VDAAERILEL 676 Query: 662 LMGTKADERFKFIQERASFID 682 LMG K + R ++ E A +D Sbjct: 677 LMGEKVEPRRNWLIESADRVD 697 >gi|83719101|ref|YP_441494.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264] gi|167580262|ref|ZP_02373136.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis TXDOH] gi|167618385|ref|ZP_02387016.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis Bt4] gi|257139822|ref|ZP_05588084.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis E264] gi|83652926|gb|ABC36989.1| DNA topoisomerase IV, subunit B [Burkholderia thailandensis E264] Length = 660 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKIEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNEVE 657 >gi|257464605|ref|ZP_05628976.1| DNA gyrase subunit B [Actinobacillus minor 202] gi|257450265|gb|EEV24308.1| DNA gyrase subunit B [Actinobacillus minor 202] Length = 809 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 237/582 (40%), Positives = 351/582 (60%), Gaps = 20/582 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 ++ +YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SEQNQQSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQ 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS +L +T+ R+ + Q +S G P +PL +K GT + F P I Sbjct: 121 GVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F +K F+ L K + ++L+ V +++ E E F + GG+K Y++ Sbjct: 180 FKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 E ++ I + F TEK G VE ++ W + + + N I +GGTH +G Sbjct: 233 LNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGF 289 Query: 335 RVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLVS Sbjct: 290 RAALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449 + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ L Sbjct: 350 EVRGAVESSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ + Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLS 469 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 470 SQEVATLITALGTGIGREDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++++ PPL+++ +G + Y D + + + G G Sbjct: 530 NGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 571 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 725 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 780 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 781 KLFSTLMGDEVEPRRDFIESNALYA-QLD 808 >gi|262370827|ref|ZP_06064151.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046] gi|262314189|gb|EEY95232.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046] Length = 626 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 247/646 (38%), Positives = 373/646 (57%), Gaps = 29/646 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+AN I V++ Sbjct: 2 SQYTAQSLEVLSGLDPVRRRPGMY---TDTTRPNHLAQEVIDNAVDEALAGHANKITVTV 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISV Sbjct: 59 YKDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDK 219 VNALS + V V RQ ++ F G P +PL E + GT + F P+ K F Sbjct: 118 VNALSSRVEVEVQRQGNLYQMAFEHGEPTAPLVVLEGKAPKRATGTTVHFWPEAKYFDSP 177 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L ++KA L+ ++ + EK + F GL YL ++E+ Sbjct: 178 -KFALKALKHNLKAKAVLAAGLQINYVDQ-------INDEKIVWQFENGLVDYLMDEIED 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 R ++ F + + R + E+AI W + E SY N I T +GGTH +GLR Sbjct: 230 REILPHPAFVATGDAE---RASAEFAICWNVDGGELVQESYVNLIPTAQGGTHVNGLRSG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 +T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 287 VTDAMREFCELRNLLPRNMKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREASGIV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 +N +D F +L QN A +L E I ++ RL+ ++V RK + LPGKL+DC Sbjct: 347 QNIAKDAFALWLNQNSDIAMQLAEMAISKAGRRLK--AAKKVERKKIVAGPTLPGKLSDC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ ++ Sbjct: 405 VGHTLEESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ Sbjct: 465 AIAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPILVEEGHLYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL+RI YA D++ + +L++ K +I+RFKGLGEM ASQL+ET +D N Sbjct: 524 PPLYRIDDAKDVHYALDDDELESMLKKCK---TKNPQITRFKGLGEMNASQLRETTLDPN 580 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L++++++ + L ++ +R ++++++ + + Sbjct: 581 TRRLVQLDLDDSHFTAGLLDKL---LAKKRSSDRKEWLEQKGNLAE 623 >gi|167856132|ref|ZP_02478872.1| DNA gyrase subunit B [Haemophilus parasuis 29755] gi|167852728|gb|EDS24002.1| DNA gyrase subunit B [Haemophilus parasuis 29755] Length = 810 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 235/586 (40%), Positives = 352/586 (60%), Gaps = 20/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ ++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 1 MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 N I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CNDIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL + GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETEK-TGTTVRFWPSY 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ A L K + ++L+ V ++ E E F + GG++ Y+ Sbjct: 179 DIFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE-------EHFKYEGGIRAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E +++I F TEK +E ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKNVIHPTPFYLSTEKDDI---GIEISMQWNDSFNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKRA----ISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y E + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + +E+++ + YL++NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRNPLESSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R +Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 IE+ ++++ PPL+++ +G + Y D ++ G Sbjct: 529 IERGYVYIAQPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLY 574 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + ++ K + + I R+KGLGEM QL ET MD R +L Sbjct: 714 VQRGERQQSIESVAE---AIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKML 770 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A + ++ Sbjct: 771 QVTITDAI----AADKLFTTLMGDEVEPRRDFIENNALYA-NLD 809 >gi|78067168|ref|YP_369937.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383] gi|77967913|gb|ABB09293.1| DNA topoisomerase IV subunit B [Burkholderia sp. 383] Length = 660 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLATQGAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDESVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+ + PPLFR+ +G K +YA D+ + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVCVARPPLFRVDAPARGKKAAQKLYALDDGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|83950587|ref|ZP_00959320.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM] gi|83838486|gb|EAP77782.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM] Length = 805 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 +A + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEAAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V++ + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVTVTIHDDSSVSVSDNGRGIPVDLHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG L+ ++GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L + + A+L+ V+ ++ P + E ++ GG+K ++ Sbjct: 181 DTFSNL-EYSFETLERRLRELAFLNSGVRIILRDER-----PAEPLETELHYDGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++S + E E+ VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRHKSPMIPEPIFITGERDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + + +NP EA ++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPAVEGLMNEKLNEWFEENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TELF+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M +LI+ Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELID 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ + L E Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIEQGTDD 571 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ K G+ + + R+KGLGEM QL ET +D RTLL+V++N + + D Sbjct: 722 DLLDAILKEGEKGLSLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVND----VAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQENALNVENLD 804 >gi|254461194|ref|ZP_05074610.1| DNA gyrase, B subunit [Rhodobacterales bacterium HTCC2083] gi|206677783|gb|EDZ42270.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium HTCC2083] Length = 805 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 229/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SETEQNNAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADAVNVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L + + R +F G L+ + GT + F Sbjct: 121 LHGVGVSVVNALSNWLELRIWRDGKEHVARFEHGDTAEHLKVVGDAGERTGTEVRFLASL 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ P + E Y+ GG+K ++ Sbjct: 181 DTFSNL-EYVFDTLEKRLRELAFLNSGVRIILEDER-----PAEPLRTELYYDGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + ++S I E EK VE A+ W + E + N I +GGTH + Sbjct: 235 KYLDRSKSSIMPEPVYMIGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA + + ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAASSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP EA ++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPAVESLVNEKLAEWFEENPNEAKIIVGKIIEAAHAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +K+ N Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDKMLN 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ + L E G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAEMDEYLIEQGIDG 571 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V+IN + + D Sbjct: 722 DLLSAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIND----VAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDIVEPRREFIQQNALNVENLD 804 >gi|312882232|ref|ZP_07741978.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122] gi|309370076|gb|EFP97582.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122] Length = 805 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 233/566 (41%), Positives = 347/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ N S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVRDDGRGIPTEMHPE-ENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I SQ + G P +PL +N GT I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDTQN-TGTEIRFWPSAETFSNT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F F GG++ ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDEREDD------KSDHFMFEGGIQAFVDHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ +VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIDKIFHFDFERED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV+NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLAEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ Sbjct: 531 AQPPLYKVKKGKQERYIKDEDAMNDY 556 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQ---PVASFVEALEWLMKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|148262089|ref|YP_001228795.1| DNA gyrase, B subunit [Geobacter uraniireducens Rf4] gi|146395589|gb|ABQ24222.1| DNA gyrase subunit B [Geobacter uraniireducens Rf4] Length = 794 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 236/579 (40%), Positives = 350/579 (60%), Gaps = 18/579 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ + S +Y A I++LEGL VR RP MYIG T + LHHL E++DN++DE +AG+ Sbjct: 1 MSDDTTSKDYGADKIKVLEGLSAVRKRPAMYIGSTSVQGLHHLVYEIVDNSIDEALAGHC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V+++ +G +TVVDNGRGIP + HP KS E++LT LHAGGKFDNS+Y++SGGL Sbjct: 61 DDILVTINVDGSVTVVDNGRGIPTDMHP-TEGKSAAEVVLTVLHAGGKFDNSSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS +L + + R +F Q + G P PLE + + RGT+ITF PD + Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKLFRQSYRCGDPQGPLEVVGETKK-RGTKITFFPDDE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L + + A+L+ V+ ++ + EF++ GG+ ++++ Sbjct: 179 IFET-TEFSFDTLSQRLREMAFLNAGVRIKIVDER-------TEKVHEFFYEGGINSFVE 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +N++ I + EK G +E A+ + + +I ++ N I T EGGTH G Sbjct: 231 YLNKNKTPIHPKPIYISGEKGGV---EMEIAMQYNDSYDEKIFTFANNINTHEGGTHLIG 287 Query: 334 LRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR + YA + + +I +DL ++SV I +P+F GQTKTKL + + Sbjct: 288 FKAALTRTMNTYANANNLLKNVKENISGEDLREGLTSVISVKIPQPQFEGQTKTKLGNSE 347 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE + + YL +NP A ++LE I+ + R R+ R+ RK A+ LP Sbjct: 348 VKGYVETLMNEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLP 407 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ Sbjct: 408 GKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSS 467 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q+I L+ ALG + + LRY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ Sbjct: 468 QEIRTLIAALGTSIGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLEMIER 527 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL++I +G K Y +E Q L E Sbjct: 528 GYLYIAQPPLYKIKRGRKEQYLKNEAALQNYLLEEGTED 566 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + T T+ + E +++L F + K + I R+KGLGEM QL ET M R Sbjct: 692 VKATVSTEEKQLFESESHEELLAFFFETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRV 751 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V+I + + ++ LMG + + R +FI++ A + ++ Sbjct: 752 LLQVKIEDIV----EAEEIFTVLMGDQVEPRREFIEQNALNVSNLD 793 >gi|163802136|ref|ZP_02196031.1| DNA gyrase subunit B [Vibrio sp. AND4] gi|159173941|gb|EDP58751.1| DNA gyrase subunit B [Vibrio sp. AND4] Length = 805 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 226/566 (39%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVTDDGRGIPTEMHSE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R +Q + G P +PL ++ GT+I F P + F + Sbjct: 121 SVVNALSEKVVLTIHRGGHTHTQTYHHGDPQAPLAVVGDT-DQTGTQIRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E + + F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLVDERE------EDKSDHFMYEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ VE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIVEKIFHFDFERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L++NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMTQY 556 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQPVTS---FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|261494473|ref|ZP_05990959.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309857|gb|EEY11074.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. OVINE] Length = 810 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 234/586 (39%), Positives = 349/586 (59%), Gaps = 20/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ + +YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ + Q +S G P +PL GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTEK-TGTSVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V +++ E E F + GG+K Y+ Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLTTEKDGI---GVEISLLWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 IE ++++ PPL+++ +G + Y D + + + G G Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLY 574 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 726 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 782 KLFSTLMGDEVEPRRDFIETNALYA-QLD 809 >gi|238020581|ref|ZP_04601007.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147] gi|237867561|gb|EEP68567.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC 51147] Length = 662 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 246/666 (36%), Positives = 353/666 (53%), Gaps = 35/666 (5%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y SSI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GYA I V + Sbjct: 7 YTESSIKVLKGLEPVKERPGMY---TRTDSPTHIIQEVIDNAADEALGGYATRISVEIHS 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----STYEISGGLHGVGI 159 + +TV DNGRGIP NHP + +E++ T LHAGGKF+ Y SGGLHGVG+ Sbjct: 64 DQSITVRDNGRGIPTGNHP-TEHLPVVELVFTQLHAGGKFNKTEGSGAYAFSGGLHGVGV 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SV NALS L VTV R I F+ G + PL + GT + PD + + Sbjct: 123 SVTNALSKRLDVTVKRDGKIQHIAFAGGDVVEPLHPIGTCAQKDTGTEVRVYPD-THYFE 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + ++ A L ++ ++KA L V+ + + + +++P GL +YL+ L Sbjct: 182 QPSYNLAELERLLRAKAVLLQGVEVSLT-RPSKGQPENATTTQTWHYPQGLPSYLEDLLA 240 Query: 279 NR----SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333 N + +SE + ++ +A+ W EE SY N I T GGTHE+G Sbjct: 241 NAQEAVPIFASENYLAQSNDDFHAGEGAAFALTWLEEGTCANESYVNLIPTPLGGTHEAG 300 Query: 334 LRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 L+ A+ + + R + + SDD+ A +LS I +P+F GQTK KL + DA Sbjct: 301 LKQAMFNAVNNFINHHNLLPRGVKLNSDDVFSRAAFVLSARILDPQFQGQTKDKLTNRDA 360 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V + DP + +L QN K+ E I++++ RLR +++ +K LPGK Sbjct: 361 LKLVSSVCSDPLELWLNQNIEHGKKIAELAIKQAQARLRST--KKIEKKKGSGVAVLPGK 418 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN +++ N + Sbjct: 419 LTDCESEDIRENELFLVEGDSAGGSAKLARDKNTQAILPLRGKVLNSFEIHRDQLFGNAE 478 Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ LIE Sbjct: 479 IHDISVAIGIDPHGASDQPDLSTLRYGKIAILSDADVDGSHIQVLLLTLFYKHFPKLIEH 538 Query: 570 KHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKGL 620 H+++ PPLFR+ QG + +YA D+ ILE K ISRFKGL Sbjct: 539 GHIYVAQPPLFRVDINAQGKNKPARKLYALDQAELDSILERLHKENIKPSAYSISRFKGL 598 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679 GEM QLK+T + + R LL+V I DT++ KLMG +A R +++ Sbjct: 599 GEMNPDQLKDTTLHPDTRRLLQVTIPDLER--HDTENIFIKLMGKGEAASRRAWMEREGD 656 Query: 680 FIDDVG 685 + + Sbjct: 657 QAE-LD 661 >gi|302341697|ref|YP_003806226.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075] gi|301638310|gb|ADK83632.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075] Length = 795 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 228/564 (40%), Positives = 331/564 (58%), Gaps = 16/564 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NY A I++LEGLE VR RP MYIG T LHHL EV+DN++DE +AG+ I V + Sbjct: 7 NYTADKIKVLEGLEAVRKRPAMYIGSTSVDGLHHLVYEVVDNSVDEAMAGFCENIRVVIH 66 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + ++VVD+GRGIPV+ H S +++++T LHAGGKFD+ Y+++GGLHGVG+SVV Sbjct: 67 ADNSVSVVDDGRGIPVDFHA-HEGMSAVQVVMTKLHAGGKFDDKAYQVAGGLHGVGVSVV 125 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS L V ++R ++ Q++ RG P+S LE K R RGT++TF+PD +IF + Sbjct: 126 NALSQWLEVEISRDGKVYHQRYMRGKPVSELEVIGKTRR-RGTKVTFKPDEEIFET-TEY 183 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L+ + A+L+ ++ + ++ EK F++ GG+ +++ N + Sbjct: 184 SYDILVARMRELAFLNRGLRIDLADERSDEEKS-------FHYKGGINEFVEYISRNSAP 236 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + +K VE A+ + + + S+ N I T EGGTH +G + ALTR Sbjct: 237 LHPKPIYLAGQKGMVQ---VEIALQYADSYKERLFSFANNINTKEGGTHLTGFKAALTRT 293 Query: 342 IKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 I Y K DD G++SV I +P+F GQTK KL + + + VE + Sbjct: 294 INAYIANNFPKIKTPPSGDDAREGLFGVISVRIPQPQFEGQTKMKLGNSEVKGLVEQIVN 353 Query: 402 DPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D Y +NP A ++++ V R+ + V RK + + LPGKLADCS Sbjct: 354 DQLATYFEENPAVARRVVDKVTEAARAREAARKARELVRRKGVLGEHSLPGKLADCSNRD 413 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 A ELF+VEGDSAGGSAKQAR+R+ QA+LPL+GKILNV A K+ N +I ++ AL Sbjct: 414 ATVCELFLVEGDSAGGSAKQARDRNFQAILPLKGKILNVEKARFHKMIENAEIGTIITAL 473 Query: 521 GCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 G + LRY K++IMTDADVDG+HI +L+LTFF+++M +LIE HL++ PPL Sbjct: 474 GAGIGEEDFNLAKLRYHKIVIMTDADVDGSHIRTLILTFFFRQMPELIEAGHLYIAQPPL 533 Query: 580 FRITQGTKSVYAHDEEHKQKILEE 603 +RI G K Y DE+ + +L E Sbjct: 534 YRIVDGKKENYIKDEQSLRSMLLE 557 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L + G + + R+KGLGEM QL +T MD +RTLL+V+++ + Sbjct: 711 EGLLSRLLEDGAKGLGLQRYKGLGEMNPEQLWQTTMDPERRTLLQVKVDDAI----AADT 766 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI E A + Sbjct: 767 MFATLMGDQVEPRKEFIIENALEARALD 794 >gi|77917622|ref|YP_355437.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380] gi|77543705|gb|ABA87267.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380] Length = 795 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 232/571 (40%), Positives = 345/571 (60%), Gaps = 18/571 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A SI++LEGL VR RP MYIG T LHHL EV+DN++DE +AG + I V L Sbjct: 8 EYGAGSIKVLEGLSAVRKRPAMYIGSTGVMGLHHLVYEVVDNSIDESLAGVCDEISVILH 67 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV DNGRGIPV+ HP NKS E+++T LHAGGKFD+ +Y++SGGLHGVG+SVV Sbjct: 68 LDGSVTVEDNGRGIPVDMHP-TQNKSAAEVVMTVLHAGGKFDSDSYKVSGGLHGVGVSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS +L + + R I+ Q + RG+P +PL ++ RGTRITF PDP+IF + F Sbjct: 127 NALSKKLELEIRRNGRIYRQGYVRGVPDAPLREEGDTTK-RGTRITFWPDPEIF-EITDF 184 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L K + A+L+G V ++ ++ +F++ GG+ +++ ++ Sbjct: 185 SFETLSKRLRELAFLNGGVHIHIVDERS-------EKRHDFHYEGGIISFVSYLNRAKTP 237 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + +E E++G +E A + + +I ++ N I T EGGTH G + ALTR Sbjct: 238 LHAEPIFFSGEREGVQ---IEVAFQYNDGYDEKIFTFANNINTHEGGTHLVGFKAALTRT 294 Query: 342 IKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + YA + + I DDL ++SV + +P+F GQTKTKL + + + VE Sbjct: 295 MNSYATANNLLKNVKASISGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETL 354 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + + ++ +NP A ++LE IE + R RK R++ R+ + L LPGKLADC + Sbjct: 355 INEKLATFMEENPNVAKRILEKGIEAARAREAARKARDLTRRKGVLDSLALPGKLADCQE 414 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ + +I L+ Sbjct: 415 KDPALCEIYLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSNEIRTLIT 474 Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G + + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ +L++ P Sbjct: 475 AMGTGIGKGDFDISKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYLYIAQP 534 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PL++ +G + +Y DE + L + G Sbjct: 535 PLYKAKRGKRELYLKDESALTEYLLDEGVDG 565 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 Q++L+ F+ + I R+KGLGEM QL ET MD KR LL+V++ + + + Sbjct: 711 QELLDFFQARARKGQYIQRYKGLGEMNPDQLWETTMDPEKRILLQVQVEDAV----EANE 766 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 767 IFTVLMGDQVEPRREFIENNALNVSNLD 794 >gi|115499633|dbj|BAF33490.1| DNA gyrase subunit B [Listonella anguillarum] Length = 804 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 229/574 (39%), Positives = 348/574 (60%), Gaps = 17/574 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP + H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDSSVSVSDDGRGIPTDLHEE-EQVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I +Q + G+P +PL + +K GT + F P + F + Sbjct: 121 SVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +K + F + GG+K ++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK------DHFRYEGGIKAFVGHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E+ TVE A+ W + I + N I +GG H +G R AL Sbjct: 233 KTPIHEKVFHFSSERDD--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ + G Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQYQVALALDG 564 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 L K + + + R+KGLGEM QL ET MD R +L+V I + + Sbjct: 721 DALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMLQVTIEDAVG----ADEL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 777 FTTLMGDQVEPRRAFIEENALKVANLD 803 >gi|224826214|ref|ZP_03699316.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002] gi|224601315|gb|EEG07496.1| DNA topoisomerase IV, B subunit [Lutiella nitroferrum 2002] Length = 654 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 244/664 (36%), Positives = 361/664 (54%), Gaps = 36/664 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD SS+R+L+GLEPV+ RPGMY TD H+ EVIDNA DE + G+A I V+ Sbjct: 2 TQQYDESSVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLHGV 157 L +G L+V D+GRGIPV HP+ +E++ T LHAGGKF+ Y SGGLHGV Sbjct: 59 LHQDGSLSVEDDGRGIPVGLHPQ-EGVPVVELVFTRLHAGGKFNKKDGGAYAFSGGLHGV 117 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIF 216 G+SV NALS L V V R+ ++ F+ G + PL + + GTR+ PD K F Sbjct: 118 GVSVTNALSTRLEVEVKREGGVYRMAFAGGDVIEPLARVGDCGARTSGTRVRVWPDGKYF 177 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 L ++ ++KA L V + ++ + E + + +P GLK+YL Sbjct: 178 ESPRYSLPE-LERLLRAKAVLLPGVAVTLTIERPSGD-----EVKVWQYPQGLKSYLAEL 231 Query: 277 LENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 ++ E + G ++ V+WA+AW E+ SY N I T GGTHE+ Sbjct: 232 CNGDEPVAPLFSGEAYIGDDHEQFAKGEGVQWALAWFEDGAGGESYVNLIPTPSGGTHEA 291 Query: 333 GLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 GLR + +K + + R + ++++D+ +LS + +P+F GQTK KL S D Sbjct: 292 GLRAGVFEAVKSFVDHHNLLPRGVKLMAEDVWSRVRFVLSARVLDPQFQGQTKEKLTSRD 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A + + RDP + +L Q+ K+ E I +++ RL+ K+ E + + + L PG Sbjct: 352 ALKLISGLARDPVELWLNQHVEAGKKIAELAIRQAQSRLKSVKKVEKKKGSGVAVL--PG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC ELF+VEGDSAGGSAK AR++ QA+LPLRGK+LN +++ +N Sbjct: 410 KLTDCESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLFSNA 469 Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +I D+ A+G + + D LRY K+ I++DADVDG+HI LLLT FY+ L+ Sbjct: 470 EIHDISVAIGVDPHAPGEKADLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFSALLA 529 Query: 569 QKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKG 619 H+ + PPLFR+ QG K +YA DE + IL+ + G + ISRFKG Sbjct: 530 NGHICIAQPPLFRVDVPGQGKHRPPKKLYALDEGELEAILDRLRSEGVRENAWSISRFKG 589 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678 LGEM QLK+T M + R L +V + + DT+ LMG +A R +++ + Sbjct: 590 LGEMNPEQLKDTTMHPDTRRLTQVRV--RPEAEADTRRMFTMLMGKGEAASRRGWMEAKG 647 Query: 679 SFID 682 + ++ Sbjct: 648 NEVE 651 >gi|240015025|ref|ZP_04721938.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI18] gi|240081614|ref|ZP_04726157.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|240122094|ref|ZP_04735056.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID24-1] gi|240124387|ref|ZP_04737343.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] Length = 871 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63 + L++ P ++ + +PA + + Y A SI++LEGLE VR RPG Sbjct: 44 NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103 Query: 64 MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 MYIG T D LHH+ EV+DNA+DE +AG+ + I V++ + ++V DNGRG+P HP Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 +F RG PL+ +K+GT + F + FG+ + L K + ++L+ V Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + +++ + E F GG+ ++Q ++ + +IF EK G +V Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + + + N I +GGTH + LR +TR I Y E + K + Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ +LSV + +P+F+ QTK KLVS + V + +L +NP EA + Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +++ + R RK RE+ R+ + L LPGKLADC + +EL++VEGDSAGGSA Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537 Q R+R QA+LPL+GKILNV A EK+ +Q++ L+ ALG + ++ E LRY + Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ PPL++ G + Y DE K Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + L + R + ++L +T Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 829 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871 >gi|83745763|ref|ZP_00942820.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551] gi|207725317|ref|YP_002255713.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum MolK2] gi|83727453|gb|EAP74574.1| Topoisomerase IV subunit B [Ralstonia solanacearum UW551] gi|206590552|emb|CAQ37514.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum MolK2] Length = 669 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 252/677 (37%), Positives = 358/677 (52%), Gaps = 45/677 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 ++ S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ Sbjct: 6 PSSMSKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFG 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 LI V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y S Sbjct: 63 KLIAVTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFS 121 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NALS L VTV R + + FS G + K E+ K GTR+ Sbjct: 122 GGLHGVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRV 181 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F + A L ++ +SKA L VK + +K E E+ + GL Sbjct: 182 WPDAKYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGL 233 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSY 318 + YL L S I + E E W +AW EE SY Sbjct: 234 RGYLIESLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESY 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREP 377 N I T GGTHESGLR L + +K + E+ + + ++ +D+ A +LS + +P Sbjct: 294 VNLIPTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQ K +L S DA R V R + +L Q+ KL E VI +++ R R ++ E Sbjct: 354 QFQGQIKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVE 413 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 + + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+L Sbjct: 414 KKKGSGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVL 471 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASL 554 N +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI L Sbjct: 472 NTWETERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVL 531 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG 608 LLT F++ LIE+ ++ + PPL+R+ +G K +YA D+ + I ++ +K G Sbjct: 532 LLTLFFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDG 591 Query: 609 KG--KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT- 665 +ISRFKGLGEM A QL ET M+ + R LL V I + + T + +N LMG Sbjct: 592 LKEDSWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVNMMNMLMGKG 649 Query: 666 KADERFKFIQERASFID 682 +A R +++ R + ++ Sbjct: 650 EAGARRTWLEARGNEVE 666 >gi|301633245|gb|ADK86799.1| DNA topoisomerase IV, B subunit [Mycoplasma pneumoniae FH] Length = 635 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 234/649 (36%), Positives = 360/649 (55%), Gaps = 30/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY ++I+IL+GL+ V+ RPGMYIG TD + HHL E++DN +DEV++G+AN I V L Sbjct: 3 NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +TV DNGRGIP E H ST++ + T LHAGGKFDN +Y+I+GGLHGVG SV Sbjct: 63 HAENQITVSDNGRGIPFETHS-DSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219 VNALSD+L VTV RQ ++ + G + ++ GT +TFRPDPK+F Sbjct: 122 VNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKI 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD+ + + A+L +++ + + EK E F+ G+ YL + Sbjct: 182 H-FDSELIRARLKELAFLFKKLQLTFVDETGSGEK------EVFFTEAGISQYLDELNAD 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 I+ +IF TE ++ E+ ++ S+ N+I T EGG+HE+G R ++ Sbjct: 235 SKQIAQKIFVSGTEDDIELEAVFQFIDG---EDEKLLSFANSIRTSEGGSHEAGFRQSVG 291 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 I Y +R + + ++ GI+ V + E F GQTK+KL S + + Sbjct: 292 DVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAV 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKL 453 V+ + F +L +N ++A ++E + + R ++QR++ + + K GKL Sbjct: 352 VQKLTQKHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQ 512 A ELF+VEGDSAGG+AK R+R QA+LPLRGK+LNV ++K NN++ Sbjct: 412 APAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ L+ +G + + D +Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE+ H+ Sbjct: 472 LLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHI 531 Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +L PPL++ + K+ Y E+ ++ + + R+KGLGEM A QL ET Sbjct: 532 YLALPPLYKFEGRDKKARYLWTEQELEQYRAKH-----SHFNVQRYKGLGEMNADQLWET 586 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L++++++ + + K N MG K + R +I+ +F Sbjct: 587 TMNPMTRKLIQIKLDNFIQAEKQI----NVFMGDKTELRKSWIEANINF 631 >gi|254429302|ref|ZP_05043009.1| DNA gyrase, B subunit [Alcanivorax sp. DG881] gi|196195471|gb|EDX90430.1| DNA gyrase, B subunit [Alcanivorax sp. DG881] Length = 805 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 231/580 (39%), Positives = 348/580 (60%), Gaps = 20/580 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 A NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I+ Sbjct: 2 AEKNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +++ DNGRGIP E H + S E+I+T LHAGGKFD++TY++SGGLHGVG Sbjct: 62 VVIHPDESMSIQDNGRGIPTELHEE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+EL +T+ R + Q + G+P +PLE + GT + FRP P+ F + Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSSGTAVHFRPSPETFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V+ ++ E + F + GGL ++ Sbjct: 180 I-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYEGGLSAFVSYLNT 231 Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + E+ G VE A+ W + I + N I +GGTH +G R Sbjct: 232 NKTALNQVFHFNFEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNSYMDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE + D F YL++NP EA +++ +I+ + R RK RK A+ LPGKL Sbjct: 349 AVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC Q +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY ++IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 ++ PPL+++ +G + Y D+ ++ L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDDPAMEEYLTTLALDKTGLY 568 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 H + L+ + R+KGLGEM A QL ET MD R +L+V I + Sbjct: 718 RHFAEALDWLMVQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAI----A 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG D R +FI+ A + ++ Sbjct: 774 ADQIFTCLMGDDVDPRRQFIESNALQVSNLD 804 >gi|172061321|ref|YP_001808973.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria MC40-6] gi|171993838|gb|ACB64757.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MC40-6] Length = 660 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 243/676 (35%), Positives = 362/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R + GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKRSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R T E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+ + PPLFR+ +G K +YA DE + L++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|240949606|ref|ZP_04753941.1| DNA gyrase subunit B [Actinobacillus minor NM305] gi|240295864|gb|EER46540.1| DNA gyrase subunit B [Actinobacillus minor NM305] Length = 809 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 237/582 (40%), Positives = 351/582 (60%), Gaps = 20/582 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 ++ +YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SEQNQQSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQ 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIVVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS +L +T+ R+ + Q +S G P +PL +K GT + F P I Sbjct: 121 GVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F +K F+ L K + ++L+ V +++ E E F + GG+K Y++ Sbjct: 180 FKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 E ++ I + F TEK G VE ++ W + + + N I +GGTH +G Sbjct: 233 LNEGKTHIHNMPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGF 289 Query: 335 RVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLVS Sbjct: 290 RAALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSS 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449 + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ L Sbjct: 350 EVRGAVESSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ + Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLS 469 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 470 SQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++++ PPL+++ +G + Y D + + + G G Sbjct: 530 NGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAG 571 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 725 FAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 780 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 781 KLFSTLMGDEVEPRRDFIESNALYA-QLD 808 >gi|239997997|ref|ZP_04717921.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|240017473|ref|ZP_04724013.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA6140] gi|240113895|ref|ZP_04728385.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|240116627|ref|ZP_04730689.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|240124740|ref|ZP_04737626.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|240129064|ref|ZP_04741725.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|291042854|ref|ZP_06568595.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|291013288|gb|EFE05254.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|317165439|gb|ADV08980.1| DNA gyrase subunit B [Neisseria gonorrhoeae TCDC-NG08107] Length = 871 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63 + L++ P ++ + +PA + + Y A SI++LEGLE VR RPG Sbjct: 44 NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103 Query: 64 MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 MYIG T D LHH+ EV+DNA+DE +AG+ + I V++ + ++V DNGRG+P HP Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 +F RG PL+ +K+GT + F + FG+ + L K + ++L+ V Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + +++ + E F GG+ ++Q ++ + +IF EK G +V Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + + + N I +GGTH + LR +TR I Y E + K + Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ +LSV + +P+F+ QTK KLVS + V + +L +NP EA + Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +++ + R RK RE+ R+ + L LPGKLADC + +EL++VEGDSAGGSA Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537 Q R+R QA+LPL+GKILNV A EK+ +Q++ L+ ALG + ++ E LRY + Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ PPL++ G + Y DE K Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + L + R + ++L +T Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 829 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871 >gi|53718706|ref|YP_107692.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei K96243] gi|53726261|ref|YP_103773.1| DNA topoisomerase IV subunit B [Burkholderia mallei ATCC 23344] gi|76812112|ref|YP_332710.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1710b] gi|121598410|ref|YP_992040.1| DNA topoisomerase IV subunit B [Burkholderia mallei SAVP1] gi|124384898|ref|YP_001028484.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10229] gi|126440609|ref|YP_001058186.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 668] gi|126450291|ref|YP_001081617.1| DNA topoisomerase IV subunit B [Burkholderia mallei NCTC 10247] gi|126455235|ref|YP_001065424.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 1106a] gi|134281153|ref|ZP_01767862.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305] gi|166998425|ref|ZP_02264285.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20] gi|167737678|ref|ZP_02410452.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 14] gi|167821799|ref|ZP_02453479.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 91] gi|167823284|ref|ZP_02454755.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 9] gi|167844836|ref|ZP_02470344.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei B7210] gi|167901843|ref|ZP_02489048.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei NCTC 13177] gi|167910066|ref|ZP_02497157.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei 112] gi|167918094|ref|ZP_02505185.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei BCC215] gi|217420238|ref|ZP_03451744.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576] gi|226194456|ref|ZP_03790054.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237811436|ref|YP_002895887.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346] gi|238561081|ref|ZP_00442775.2| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4] gi|242316466|ref|ZP_04815482.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b] gi|254175499|ref|ZP_04882159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399] gi|254181318|ref|ZP_04887915.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655] gi|254195128|ref|ZP_04901557.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13] gi|254202474|ref|ZP_04908837.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH] gi|254207809|ref|ZP_04914159.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU] gi|254259070|ref|ZP_04950124.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a] gi|254298402|ref|ZP_04965854.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e] gi|254356286|ref|ZP_04972562.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280] gi|52209120|emb|CAH35064.1| topoisomerase IV subunit B [Burkholderia pseudomallei K96243] gi|52429684|gb|AAU50277.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 23344] gi|76581565|gb|ABA51040.1| DNA topoisomerase IV, subunit B [Burkholderia pseudomallei 1710b] gi|121227220|gb|ABM49738.1| DNA topoisomerase IV, subunit B [Burkholderia mallei SAVP1] gi|124292918|gb|ABN02187.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10229] gi|126220102|gb|ABN83608.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 668] gi|126228877|gb|ABN92417.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106a] gi|126243161|gb|ABO06254.1| DNA topoisomerase IV, B subunit [Burkholderia mallei NCTC 10247] gi|134247459|gb|EBA47544.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 305] gi|147746721|gb|EDK53798.1| DNA topoisomerase IV, subunit B [Burkholderia mallei FMH] gi|147751703|gb|EDK58770.1| DNA topoisomerase IV, subunit B [Burkholderia mallei JHU] gi|148025283|gb|EDK83437.1| DNA topoisomerase IV, subunit B [Burkholderia mallei 2002721280] gi|157808181|gb|EDO85351.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 406e] gi|160696543|gb|EDP86513.1| DNA topoisomerase IV, subunit B [Burkholderia mallei ATCC 10399] gi|169651876|gb|EDS84569.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei S13] gi|184211856|gb|EDU08899.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1655] gi|217397542|gb|EEC37558.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 576] gi|225933541|gb|EEH29530.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pakistan 9] gi|237504774|gb|ACQ97092.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei MSHR346] gi|238525514|gb|EEP88942.1| DNA topoisomerase IV, B subunit [Burkholderia mallei GB8 horse 4] gi|242139705|gb|EES26107.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1106b] gi|243065486|gb|EES47672.1| DNA topoisomerase IV, B subunit [Burkholderia mallei PRL-20] gi|254217759|gb|EET07143.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei 1710a] Length = 660 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNEVE 657 >gi|54307248|ref|YP_128268.1| DNA gyrase subunit B [Photobacterium profundum SS9] gi|46911668|emb|CAG18466.1| Putative DNA gyrase, subunit B [Photobacterium profundum SS9] Length = 805 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 224/566 (39%), Positives = 346/566 (61%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP + H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I Q + G+P PLE + +K GT + F P F + Sbjct: 121 SVVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGET-DKTGTLLRFWPSEGTFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V ++E +++ F + GG++ ++ N Sbjct: 180 V-FHYEILAKRLRELSFLNSGVSIRLIDERE------EGKQDHFMYEGGIRAFVAHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +++F E++ VE A+ W + I + N I +GG+H +G R AL Sbjct: 233 KTPIHAKVFHFDFERED--GIVVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGYSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+ + + +L++NP +A + +I+ S R RK R RK A+ LPGKLAD Sbjct: 351 ESVMGEKLSEFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ Sbjct: 471 LITAMGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y D+E + Sbjct: 531 AQPPLYKVKKGKQEQYIKDDEDMDQY 556 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K + + + R+KGLGEM QL ET MD R +L+V IN + Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAV----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|307544310|ref|YP_003896789.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581] gi|307216334|emb|CBV41604.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581] Length = 626 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 239/644 (37%), Positives = 337/644 (52%), Gaps = 27/644 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y ASSI +L GLEPVR RPGMY TD +HL EVIDN++DE + G+A I V L Sbjct: 3 QYSASSIEVLAGLEPVRKRPGMY---TDTSRPNHLIQEVIDNSVDEALGGHAKAIAVRLF 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G + V D+GRG+P++ HP+ S +E+I+T LHAGGKF S+Y SGGLHGVG+SVV Sbjct: 60 EDGGVEVSDDGRGMPIDIHPEH-GVSGIELIMTKLHAGGKFSASSYRFSGGLHGVGVSVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAG 221 NALS L V V + + F G S L + GT + F P+ F Sbjct: 119 NALSRRLEVEVLKDGSRHHMAFEHGERASDLTVIGSAAKRATGTLVRFWPEASYFDSP-K 177 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 RL + ++KA L ++ + + F GL+ YL + Sbjct: 178 LSLTRLKHLLRAKAVLCPGLQVTLV--------EADGTESVWQFEDGLRDYLAQATDGYE 229 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVALT 339 ++ + F G + V+WAI W E E SY N I T GGTH +GLR + Sbjct: 230 VLPASPFVGHFADE---EQAVDWAIQWLPEGGEPLLESYVNLIPTPLGGTHVNGLRSGML 286 Query: 340 RGIKKYAEL-TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++++ E + R + + ++DL +LSV + EP+FAGQTK +L S V Sbjct: 287 EALREFCEYRSLLPRGVKLTAEDLWERVSYVLSVKMLEPQFAGQTKERLSSRTVAGFVSG 346 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 ++D F +L + + L E VI ++ R + ++V RK LPGKLADCS Sbjct: 347 VVKDAFSLWLNHHVDQGEALAELVISAAQRRQK--SAKKVARKKVTSGPALPGKLADCSG 404 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +ELF+VEGDSAGGSAKQAR R QA+LPLRGKILN + I +Q++ D+ Sbjct: 405 QDPASSELFLVEGDSAGGSAKQARQRETQAILPLRGKILNTWEVEAHDIYGSQEVHDIAV 464 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 A+G S LRY K+ I+ DAD DG HIA+LL F + L++ H+F+ PP Sbjct: 465 AIGMEPGSDDL-SKLRYHKICILADADSDGLHIATLLCALFVRHFPALVDAGHVFVAMPP 523 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L+RI G + YA DE K IL + +G + RFKGLGEM QL+ET M A R Sbjct: 524 LYRIDLGKEVFYALDESEKAAILRRLEGK-RGTPNVQRFKGLGEMSPLQLRETTMAAETR 582 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 L+++ +L+ L +A +R ++++ + + Sbjct: 583 RLVQLTREVGDGTLEMMDML---LAKKRASDRKSWLEDYGNLAE 623 >gi|170700644|ref|ZP_02891642.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria IOP40-10] gi|170134463|gb|EDT02793.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria IOP40-10] Length = 660 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 244/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLTTQGAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R T E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+ + PPLFR+ +G K +YA DE + L++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|254477019|ref|ZP_05090405.1| DNA gyrase, B subunit [Ruegeria sp. R11] gi|214031262|gb|EEB72097.1| DNA gyrase, B subunit [Ruegeria sp. R11] Length = 805 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 228/580 (39%), Positives = 335/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADRVVVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG L ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLTVVGDCGDQTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ E ++ GG+K ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKLTAELFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ + EK VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKTPVMDAPVYITGEKDDI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP EA +++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLVGEKLAEWFEENPNEAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ + L G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDEYLINQGVEG 571 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V + + + D Sbjct: 723 LLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MVEADDLF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804 >gi|145629698|ref|ZP_01785494.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21] gi|144978035|gb|EDJ87814.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21] Length = 617 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 246/630 (39%), Positives = 345/630 (54%), Gaps = 21/630 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + NY A I +L+ LEPV++RPGMY TD +HL EVIDN++DE +AG+A IEV Sbjct: 2 TTNYSAQEITVLKDLEPVQIRPGMY---TDTTRPNHLAQEVIDNSVDEALAGFATKIEVI 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + + V DNGRG+PV+ HP S +E+ILT LHAGGKF N YE +GGLHGVGIS Sbjct: 59 LHPDQSIEVTDNGRGMPVDIHP-TEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGIS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ + + V R ++ F G + LE + + D A Sbjct: 118 VVNALSERVDIQVKRNGEVYKIAFENGSKVEELEIIGTCGRRTTGTTVHFKPNPKYFDSA 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F +RL + ++KA L ++ + ++ + + GL YL + Sbjct: 178 KFSVSRLRHLLRAKAVLCSGLEIKFIDK-------VNNTQDIWLYEDGLSDYLIEAVNGF 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVAL 338 + + F G+ + V WA+ W E E SY N I T +GGTH +GLR L Sbjct: 231 ETLPEKPFVGEFKG---ANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGL 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 I+++ E R + + +DD+ ILS+ +++ +FAGQTK +L S + V Sbjct: 288 LDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVS 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 L+D F +L QN +A KL E I ++ RLR ++V RK + LPGKLADC Sbjct: 348 GVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLR--AAKKVVRKKLVSGPALPGKLADCG 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 TELF+VEGDSAGGSAKQAR+R QA+LPLRGKILN +++ + +I D+ Sbjct: 406 SQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG S LRY KV I+ DAD DG HIA+LL F + L++ H+++ P Sbjct: 466 VALGIDPDSNDL-SQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PL+RI + YA DE K+ IL+ K+ KGK + RFKGLGEM SQL+ET MD N Sbjct: 525 PLYRIDLNKEVFYALDENEKEAILDRL-KNKKGKPNVQRFKGLGEMNPSQLRETTMDPNT 583 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 R L+++ + + DT + ++ L+ K Sbjct: 584 RRLVQLTYDLGEDQGSDTLELMDMLLDEKT 613 >gi|119471661|ref|ZP_01614046.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales bacterium TW-7] gi|119445440|gb|EAW26727.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales bacterium TW-7] Length = 808 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 227/581 (39%), Positives = 352/581 (60%), Gaps = 18/581 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIFV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHLDGSVSVRDNGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +TV R+ + Q ++ G+P +PL GT + F P + F + Sbjct: 121 SVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGD-SETTGTELRFWPSAETFTNL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E + + F + GG++ +++ N Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIQAFVEYINRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F E+ +VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHKGVFHFTHER-VEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSAL 291 Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 292 TRTLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + F +L++NP++A ++ +I+ S R RK R RK A+ LPGKL Sbjct: 352 AVEQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++ Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ + L + Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVEYLTSLALNNAALYT 572 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ ++ LE K I I R+KGLGEM +QL ET MD + R +L Sbjct: 711 IQRGEKT---KPVDNFVDALEWLITESKRGIYIQRYKGLGEMNPNQLWETTMDPDARRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A + ++ Sbjct: 768 QVTIEDAVG----ADQLFATLMGDQVEPRRDFIETNALRVVNLD 807 >gi|194099990|ref|YP_002003129.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945] gi|193935280|gb|ACF31104.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945] Length = 871 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63 + L++ P ++ + +PA + + Y A SI++LEGLE VR RPG Sbjct: 44 NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103 Query: 64 MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 MYIG T D LHH+ EV+DNA+DE +AG+ + I V++ + ++V DNGRG+P HP Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 +F RG PL+ +K+GT + F + FG+ + L K + ++L+ V Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + +++ + E F GG+ ++Q ++ + +IF EK G +V Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + + + N I +GGTH + LR +TR I Y E + K + Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ +LSV + +P+F+ QTK KLVS + V + +L +NP EA + Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +++ + R RK RE+ R+ + L LPGKLADC + +EL++VEGDSAGGSA Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537 Q R+R QA+LPL+GKILNV A EK+ +Q++ L+ ALG + ++ E LRY + Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ PPL++ G + Y DE K Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + L + R + ++L +T Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 829 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871 >gi|294138805|ref|YP_003554783.1| DNA gyrase subunit B [Shewanella violacea DSS12] gi|23307486|dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] gi|293325274|dbj|BAJ00005.1| DNA gyrase, B subunit [Shewanella violacea DSS12] Length = 806 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 221/575 (38%), Positives = 350/575 (60%), Gaps = 17/575 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + + Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEVI 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHADNSVSVKDDGRGIPVDIHPE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R ++ Q ++ G+P +P+++ + GT + F P + F Sbjct: 121 VSVVNALSEKLQLTIRRNGKLYEQFYTMGVPDAPIKEIGDATS-TGTELRFWPSHETFTT 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L+K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 NIKFHFDILVKRVRELSFLNSGVGIRLIDERDNRD-------EFFQYQGGISAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E+ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTAVNKDVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRNLNAYMEREGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + YL+++P EA ++ +I+ S R RK R RK A+ LPGKLA Sbjct: 351 VEQTMGEKLGDYLMEHPNEARLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 470 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 471 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE + L G Sbjct: 531 IAQPPLYKVKKGRQEQYLKDELALTEFLTNLALDG 565 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L + + I R+KGLGEM QL ET MD R +L V I + Sbjct: 723 EALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLVVTIEDAIG----ADQL 778 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+E A + ++ Sbjct: 779 FTCLMGDQVEPRRQFIEENALNVANLD 805 >gi|149191879|ref|ZP_01870113.1| DNA gyrase subunit B [Vibrio shilonii AK1] gi|148834271|gb|EDL51274.1| DNA gyrase subunit B [Vibrio shilonii AK1] Length = 805 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 233/566 (41%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPE-EQVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL +K GT I F P + F + Sbjct: 121 SVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLTVIGDT-DKTGTEIRFWPSEETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F F GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFMFEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E+ TVE A+ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIIQKIFHFDNERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD I+SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+A+ + +LV+NP EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + LE K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQEVTN---FVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADQLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|240118850|ref|ZP_04732912.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] Length = 871 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 25/634 (3%) Query: 5 SIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFA-NQSASDNYDASSIRILEGLEPVRMRPG 63 + L++ P ++ + +PA + + Y A SI++LEGLE VR RPG Sbjct: 44 NTQLYAPSRPLFPQGADCFGGIAKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPG 103 Query: 64 MYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 MYIG T D LHH+ EV+DNA+DE +AG+ + I V++ + ++V DNGRG+P HP Sbjct: 104 MYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHP 163 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+SVVNALSD + +T+ R Sbjct: 164 K-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFV 222 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 +F RG PL+ +K+GT + F + FG+ + L K + ++L+ V Sbjct: 223 RFVRGETEEPLKIVGD-SDKKGTTVRFLAGTETFGNI-EYSFDILAKRIRELSFLNNGVD 280 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + +++ + E F GG+ ++Q ++ + +IF EK G +V Sbjct: 281 IELTDERD-------GKHESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSV 330 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 E A+ W + + + N I +GGTH + LR +TR I Y E + K + Sbjct: 331 ECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAG 390 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ +LSV + +P+F+ QTK KLVS + V + +L +NP EA + Sbjct: 391 DDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIIT 450 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +++ + R RK RE+ R+ + L LPGKLADC + +EL++VEGDSAGGSA Sbjct: 451 GKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSA 510 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEK 537 Q R+R QA+LPL+GKILNV A EK+ +Q++ L+ ALG + ++ E LRY + Sbjct: 511 MQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITALGAGIGKEEFNPEKLRYHR 570 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ PPL++ G + Y DE K Sbjct: 571 IIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEK 630 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 + L + R + ++L +T Sbjct: 631 DQWLLGLALEKAKIVSDGR-----TIEGAELADT 659 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 773 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 829 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 830 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 871 >gi|50083301|ref|YP_044811.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ADP1] gi|49529277|emb|CAG66989.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ADP1] Length = 822 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 340/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASPTEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R I Q++ G P PL+ + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P F F+ L + + ++L+ VK ++ E + + Sbjct: 180 TVRFWPSGDTFSQTI-FNVDILARRLRELSFLNAGVKIVLRDERVNFE-------HIYAY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNDIFHFTADSDNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETFL 569 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ + + + I R+KGLGEM A QL ET MD + R +L+V I+ + + Sbjct: 738 FHQVWQQILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRHMLQVTIDDAI----EAD 793 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R FI+E A D + Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822 >gi|145589083|ref|YP_001155680.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047489|gb|ABP34116.1| DNA topoisomerase IV subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 662 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 243/674 (36%), Positives = 357/674 (52%), Gaps = 44/674 (6%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y SSI++L+GLEPVR RPGMY T H+ EV+DNA DE + G+ Sbjct: 2 ATRKTSEYSESSIQVLKGLEPVRQRPGMY---TRTDNPLHIIQEVLDNASDEALGGFGKH 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153 I V+L + ++V D+GRGIPV HP +EI+ T LHAGGKF+ Y SGG Sbjct: 59 ITVTLHTDSSVSVEDDGRGIPVGIHP-TEKLPVVEIVFTQLHAGGKFEKGTGGAYAFSGG 117 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRP 211 LHGVG+SV NALS L VTV R+ + + F+ G + L+ + + GTR+ P Sbjct: 118 LHGVGVSVTNALSKRLEVTVWREGQVSTLTFADGKVIEKLKTRASSKEDKSHGTRVRAWP 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D K F A L+++ +SKA L VK +K + + + + GL+ Sbjct: 178 DSKYFDSAAIPMPE-LIRLLRSKAVLLPGVKVTLIQEKS-------GDSQTWQYAQGLRG 229 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEEN-PEITSYCNT 321 YL + I + E+ T G + W ++W E+ P SY N Sbjct: 230 YLNEAIAQAGHGPEVIPPFEGEQYATGNGEDDSFAEGEGAAWVVSWTEDGAPVRESYVNL 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K + E+ + + ++ +D+ A ILS + +P+F Sbjct: 290 IPTPAGGTHESGLREGLFNAVKGFIEMHALQPKGVKLMPEDVFARASFILSAKVLDPQFQ 349 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V + + +L Q+ KL + VI++++ R R ++ E + Sbjct: 350 GQIKERLNSRDAVRLVSGYAKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQKVEKKK 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC E+F+VEGDSAGGSAK RN+ QA+LPLRGK+LN Sbjct: 410 SSGVAVL--PGKLTDCESEDIAQNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTW 467 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 A +++ N ++ D+ A+G D LRY KV I++DADVDGAHI LLLT Sbjct: 468 EAERDRLFANNEVHDIAVAIGVDPHGLNDTPDLSNLRYGKVCILSDADVDGAHIQVLLLT 527 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKGK 611 FY+ LI+ H+++ PPLFR+ +G K +YA D Q I ++ +K G + Sbjct: 528 LFYKHFPKLIDLGHIYISRPPLFRVDAPARGKKPAQKIYALDASELQAIEDKLRKDGVKE 587 Query: 612 --IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 +ISRFKGLGEM A QL +T ++ + R LL V + +T +++ LMG ++ Sbjct: 588 TAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLGAWTED--ETFKTMDMLMGKSESG 645 Query: 669 ERFKFIQERASFID 682 R +++ER + ++ Sbjct: 646 ARRDWLEERGNEVE 659 >gi|260906544|ref|ZP_05914866.1| DNA topoisomerase IV subunit B [Brevibacterium linens BL2] Length = 703 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 234/700 (33%), Positives = 340/700 (48%), Gaps = 63/700 (9%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++Y A + +L GLE VR RPGMYIG TD + L H E+IDNA+DE + G+ I + Sbjct: 3 EESYGARHLSVLSGLEAVRKRPGMYIGTTDSRGLMHCLWEIIDNAVDEALGGFGKSILIE 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ +G + V D+GRGIPV+ PK + +E++LT LHAGGKF S+Y SGGLHGVG S Sbjct: 63 LEPDGSVAVTDSGRGIPVDIEPK-TGLTGVEVVLTKLHAGGKFGGSSYAASGGLHGVGAS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE----------------------K 198 VVNALS L V V R + + F RG+P + Sbjct: 122 VVNALSARLDVEVTRGSKVHKMSFRRGVPGRFDDSSGQPGPDNPFEEFHEPTGLDVVRKA 181 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD----KEIAEK 254 + GTR+ + DP+IF KA FD L++ + A+L ++ ++ + Sbjct: 182 KKGVTGTRVQYWADPQIFLSKAQFDYQHLVERARQTAFLVPGLELRIEDRRGVARDETGE 241 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298 E F F GG+ ++ + + + + K+ Sbjct: 242 VIAERLEVFRFDGGITEFVDHLSIDPPMTDTWRLQDTGKFSETVPVLDSSGHLVSKEVER 301 Query: 299 RGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W S+ N + T GGTH +G A + ++K E K Sbjct: 302 EVGVDIALRWGTGYDTKVKSFVNVVSTPHGGTHLAGFEQASLKAMRKAVEANARKLKLGK 361 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIE 414 + DD++ +++V + EP+F GQTK L + ++ V + L Sbjct: 362 DKLEKDDVLAGLTAVVTVQLAEPQFEGQTKEVLGTAAVRQIVAKTVERQLGDILSSTKRA 421 Query: 415 ATKL----LEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + +E V+ + R+ R + RKTA+ LP KL DC N TELFIV Sbjct: 422 EKQQAAVLMEKVVAELKSRISARTHKENQRRKTALEASSLPAKLYDCRDNGVENTELFIV 481 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+AK ARN +QA+ P+RGKILNV A + N + L+Q +G + + Sbjct: 482 EGDSAMGTAKAARNSDHQALFPIRGKILNVQKASLSDMLANVECAALIQVIGAGSGRSFD 541 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----TQG 585 + RY +VIIMTDADVDGAHI +LLLT F++ M L+EQ +F PPL R+ +G Sbjct: 542 IDAARYGRVIIMTDADVDGAHIRTLLLTLFFRYMKPLVEQGRVFAAVPPLHRVEVVTKRG 601 Query: 586 --TKSVYAHDEEHKQK-ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 +Y + E Q + + K K I R+KGLGEM A QL ET MD + RTL R Sbjct: 602 TPNDVIYTYSEAELQALLKKLEKSKKTYKEPIQRYKGLGEMDADQLAETTMDPSMRTLRR 661 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 V + + +++ LMG+ R +FI A+ +D Sbjct: 662 VTM----ADAEAAENTFELLMGSSVGPRKEFIVSGAAVLD 697 >gi|260913523|ref|ZP_05920001.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis ATCC 43325] gi|260632463|gb|EEX50636.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis ATCC 43325] Length = 806 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 234/565 (41%), Positives = 351/565 (62%), Gaps = 19/565 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + +NY A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGYA Sbjct: 2 SNNTPENYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYAK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DITVTIHTDNSVSVQDDGRGIPVDIHPE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ + Q + G P +PL + ++ GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTSVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V + ++ F++ GG++ +++ Sbjct: 180 FNNI-EFEYDILAKRLRELSFLNSGVSIKLFDKR-------NDRQDHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ I + F TEK G VE ++ W + + + N I +GGTH +G Sbjct: 232 LNRNKNPIHQKPFYFSTEKDGI---GVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 289 RGALTRSLNNYMENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ + + YL++NP +A ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KSAVESVMNEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y E LRY +IIMTDADVDGAHI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEE 595 H+++ PPL+++ +G + Y D+E Sbjct: 529 HVYIAQPPLYKVKKGKQEQYIKDDE 553 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E K + + + R+KGLGEM QL ET MD N R +L+V I + Sbjct: 722 FEQAVEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A ++ Sbjct: 778 QLFTTLMGDEVEPRREFIESNALHA-NLD 805 >gi|330827704|ref|YP_004390656.1| DNA gyrase subunit B [Aeromonas veronii B565] gi|328802840|gb|AEB48039.1| DNA gyrase subunit B [Aeromonas veronii B565] Length = 803 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 233/575 (40%), Positives = 353/575 (61%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSDIL 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + +G ++V DNGRGIPV+ H + +S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VKIHSDGSVSVRDNGRGIPVDMHEE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD+L +T+ R ++ Q + G P +PL++ GT + F P P IF D Sbjct: 121 VSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSTG-TGTEVRFWPSPAIFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ E F + GG+K +++ + Sbjct: 180 TL-FHYEILAKRLRELSFLNSGVSIRLQDERDGRE-------AHFCYEGGIKAFVEYLNQ 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I ++F TE+ G VE A+ W + + + N I +GGTH G R A Sbjct: 232 NKTPIHPKVFHFTTEQDGI---GVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K + DD+ + ++SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRTLNSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE A+ + +L++NP +A ++ +I+ + R RK RE RK A+ LPGKLA Sbjct: 349 VEQAMGEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + LRY +IIMTDADVDGAHI +LLLTFFY++M ++IE+ +++ Sbjct: 469 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE+ + G Sbjct: 529 IAQPPLYKVKKGKQEQYLKDEDALLQYQTAMALDG 563 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + + +E GK I I R+KGLGEM QL ET MD R +L Sbjct: 706 IKRGEKV---KPVANFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRML 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I+ + + LMG + R FI+ A + ++ Sbjct: 763 RVTIDDAVG----ADQLFSTLMGDAVEPRRDFIETNALRVANLD 802 >gi|240849719|ref|YP_002971107.1| DNA gyrase subunit B [Bartonella grahamii as4aup] gi|240266842|gb|ACS50430.1| DNA gyrase subunit B [Bartonella grahamii as4aup] Length = 810 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 235/572 (41%), Positives = 340/572 (59%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 + + SD+Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 6 TSAAQSDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 66 TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+ G+ +PL+ + GT I F P + Sbjct: 125 HGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVIGDCDKESGTEIRFLPSSE 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F FD L + + A+L+ V ++ K ++ GGL +++ Sbjct: 185 TFT-MVEFDFETLERRLRELAFLNSGVYILLVDERHADTKSVE-----LHYEGGLTEFVK 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + +EK G +V+ A+ W + ++ + N I +GGTH G Sbjct: 239 YIDQSKKALLDNPIYIASEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIG 295 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 296 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA L+ V+E + R RK RE RK A+ LP Sbjct: 356 VRPIVENLVNEGLSVWLEEHPHEAKLLISKVVEAATAREAARKARELTRRKGALDITSLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 416 GKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 475 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 476 DMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 535 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++++G S Y +E ++ L Sbjct: 536 GHLYIAQPPLYKVSRGKSSQYIKNEAAFEEFL 567 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS 626 I Q + + PP+ + +LE +GK I + R+KGLGEM A Sbjct: 699 ISQNFIDIYHPPVLLRRKDKTERIFGPM----SLLESIFTNGKKGITLQRYKGLGEMNAE 754 Query: 627 QLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET +D N R+LL+V+IN D ++LMG + + R FIQ+ A + ++ Sbjct: 755 QLWETTLDPNARSLLQVKINDAT----DADSLFSRLMGDEVEPRRIFIQDNALSVANLD 809 >gi|254190689|ref|ZP_04897196.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938364|gb|EDO94034.1| DNA topoisomerase IV, B subunit [Burkholderia pseudomallei Pasteur 52237] Length = 660 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELETILDKLRKDGVRES 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNEVE 657 >gi|117918471|ref|YP_867663.1| DNA gyrase subunit B [Shewanella sp. ANA-3] gi|117610803|gb|ABK46257.1| DNA gyrase subunit B [Shewanella sp. ANA-3] Length = 805 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R+ + Q ++ G+P P++ GT I F P + F D Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E+ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804 >gi|163867345|ref|YP_001608539.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476] gi|161016986|emb|CAK00544.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476] Length = 816 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 236/582 (40%), Positives = 342/582 (58%), Gaps = 16/582 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 S EI + + D+Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 SDEITSPTQSTSPTKGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHATLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS L + + R I F+ G+ +PL+ + G Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVVGDCDQESG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T I F P + F FD L + + A+L+ V ++ K + Sbjct: 181 TEIRFLPSSETFT-MVEFDFETLERRLRELAFLNSGVHILLVDERHADIKAVE-----LH 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 + GGL +++ +++ + +EK G +V+ A+ W + ++ + N I Sbjct: 235 YEGGLIEFVKYIDQSKKALLDTPIYIASEKDG---MSVDVALWWNDSYHEKVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 +GGTH G R ALTR I YAE + K +++ DD ILSV + +P+F+ Sbjct: 292 QRDGGTHLIGFRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSS 351 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440 QTK KLVS + + VEN + + +L ++P EA L+ V+E + R RK RE R Sbjct: 352 QTKDKLVSSEVRPIVENLVNEGLSTWLEEHPNEAKLLISKVVEAATAREAARKARELTRR 411 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K A+ LPGKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV Sbjct: 412 KGALDITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVE 471 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A +++ ++ I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF Sbjct: 472 RARFDRMLSSDMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFF 531 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++M +LIE+ HL++ PPL+++++G S Y +E ++ L Sbjct: 532 FRQMPELIERGHLYIAQPPLYKVSRGKSSQYIKNEAAFEEFL 573 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL + +LE +GK I + R+KGLGEM A QL ET +D N Sbjct: 715 PPLLLRRKDKTERIFGPM----SLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPN 770 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V+IN D ++LMG + + R FIQ+ A + ++ Sbjct: 771 ARSLLQVKINDAT----DADSLFSRLMGDEVEPRRIFIQDNALSVANLD 815 >gi|309781095|ref|ZP_07675833.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA] gi|308920161|gb|EFP65820.1| DNA topoisomerase IV, B subunit [Ralstonia sp. 5_7_47FAA] Length = 661 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 255/673 (37%), Positives = 360/673 (53%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSI++L+GLEPV+ RPGMY T H+ EVIDN+ DE + GY LI Sbjct: 2 SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D+ RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHRDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + P K E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPLAELQRLLRSKAVLLPGVKVTLTLEK-------TGETLEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322 L S I + E E W +AW EE SY N I Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI++ H+ + PPL+R+ +G K +YA D+ + I ++ +K G G Sbjct: 528 FFKHFPQLIDRGHVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKDG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V + + T + +N LMG +A Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|171317650|ref|ZP_02906835.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5] gi|171097178|gb|EDT42028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia ambifaria MEX-5] Length = 660 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 245/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQIIVTLHTDQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSADETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 A +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWEAERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+ + PPLFR+ +G K +YA DE + L++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|186476877|ref|YP_001858347.1| DNA topoisomerase IV subunit B [Burkholderia phymatum STM815] gi|184193336|gb|ACC71301.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phymatum STM815] Length = 661 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 242/674 (35%), Positives = 359/674 (53%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGMHPE-ERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NALS L VTV R + FS G + PL+ + K K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFSHGDVIKPLQVRAATKADKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 DPK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLINEK-------TGERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL + L+ + E+ W +AW EE P SY N Sbjct: 229 RGYLMEGMAGSDLLIPLFEGERYAESSRSNEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHE+GLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHEAGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 LFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRE 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + T + LMG +A Sbjct: 587 SQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVALGELDFDATVT--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNQVE 658 >gi|184156322|ref|YP_001844661.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU] gi|183207916|gb|ACC55314.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii ACICU] Length = 822 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|269799058|gb|ACZ43807.1| DNA gyrase subunit B [Moritella viscosa] Length = 781 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I +Q + G+P P+ + V + GT + F P + F + Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE A+ + YL++NP EA+ ++ +I+ S R RK RK A+ LPGKL Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDDAG 568 Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + + L K I R+KGLGEM SQL ET MD R +L Sbjct: 708 IKRGEKSREVTN---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKL 662 +V I + L Sbjct: 765 QVRIEDAV----AADQLFTTL 781 >gi|329120357|ref|ZP_08249024.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis ATCC BAA-1200] gi|327462312|gb|EGF08638.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria bacilliformis ATCC BAA-1200] Length = 721 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 253/677 (37%), Positives = 355/677 (52%), Gaps = 37/677 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + + A S + Y SSI +L+GLEPV+ RPGMY T + H+ EVIDNA DE + Sbjct: 54 SARSDAAMSRNSQYSESSITVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEAL 110 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--- 147 G+A+ IEV + +G L+V DNGRGIPV HP +E++ T LHAGGKF+ + Sbjct: 111 GGFADRIEVEIHADGSLSVRDNGRGIPVGIHP-TEGLPVIELVFTRLHAGGKFNKKSGEG 169 Query: 148 -YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGT 205 Y SGGLHGVG+SV NALS L VTV R+ I FS G + PL + K GT Sbjct: 170 AYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIAFSGGDVIEPLHEAGKCAAKDSGT 229 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + PD K F + A L ++ ++KA L V + + P+ + +++ Sbjct: 230 EVRVWPDGKYFESPN-YSIAELERLLRAKAVLLPGVTVSLT---RPVKGEAQPQTQVWHY 285 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPE-ITSYC 319 P GLK YL + G + E +A+ W EE SY Sbjct: 286 PEGLKGYLNDLISEAQEAVPLFACENYLSDGHNGDFSEGEGAAFALTWLEEGSCANESYV 345 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHE+GL+ A+ + + + L R + + SDD+ +LS + +P+ Sbjct: 346 NLIPTPLGGTHEAGLKQAVFQAVNNFINLHNLLPRGVKVQSDDVFGKVAFVLSARVLDPQ 405 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQTK KL + DA + V DP + +L QN K+ E I +++ R+R +++ Sbjct: 406 FQGQTKDKLTNRDALKLVAAVSGDPLELWLNQNVEYGKKIAELAIRQAQARMRSV--KKI 463 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 +K LPGKL DC ELF+VEGDSAGGSAK AR+++ QA+LPLRGK+LN Sbjct: 464 EKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKATQAILPLRGKVLN 523 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLL 555 +++ N +I D+ A+G S D LRY K+ I++DADVDG+HI LL Sbjct: 524 SFEVHPDQLFGNAEIHDISVAIGVDPHSANDSPDLSGLRYGKIAILSDADVDGSHIQVLL 583 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG 608 LT FY+ LI H+++ PPLFR+ QG + YA D+ ILE +K G Sbjct: 584 LTLFYRHFPKLIADGHIYVAQPPLFRVDVNAQGKSKPARKFYALDQNELDGILERLQKEG 643 Query: 609 KGK--IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT- 665 + ISRFKGLGEM QLK+T M + R LLRV I + + ++T KLMG Sbjct: 644 VKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLRVAIPEG--AGEETYGIFVKLMGKG 701 Query: 666 KADERFKFIQERASFID 682 +A R +++ + Sbjct: 702 EAAARRSWMEREGDTAE 718 >gi|169794210|ref|YP_001712003.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii AYE] gi|215481765|ref|YP_002323947.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294] gi|294839208|ref|ZP_06783891.1| DNA gyrase, B subunit [Acinetobacter sp. 6013113] gi|294857145|ref|ZP_06794914.1| DNA gyrase, B subunit [Acinetobacter sp. 6013150] gi|301512866|ref|ZP_07238103.1| DNA gyrase, B subunit [Acinetobacter baumannii AB058] gi|169147137|emb|CAM84996.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii AYE] gi|213988939|gb|ACJ59238.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294] Length = 822 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|213155387|ref|YP_002317432.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057] gi|260558096|ref|ZP_05830307.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606] gi|294842426|ref|ZP_06787109.1| DNA gyrase, B subunit [Acinetobacter sp. 6014059] gi|301345942|ref|ZP_07226683.1| DNA gyrase, B subunit [Acinetobacter baumannii AB056] gi|301594683|ref|ZP_07239691.1| DNA gyrase, B subunit [Acinetobacter baumannii AB059] gi|213054547|gb|ACJ39449.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057] gi|260408450|gb|EEX01757.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606] Length = 822 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|322506191|gb|ADX01645.1| DNA gyrase subunit B [Acinetobacter baumannii 1656-2] Length = 822 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|193078690|gb|ABO13748.2| topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978] Length = 628 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 259/646 (40%), Positives = 370/646 (57%), Gaps = 29/646 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y A S+ +L GL+PVR RPGMY TD +HL EVIDNA+DE +AG+A+ I V++ Sbjct: 3 QYTAQSLEVLSGLDPVRRRPGMY---TDTSRPNHLAQEVIDNAVDEALAGHADKICVTVY 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G L+V DNGRG+PV+ HP++ +S +EIILT LHAGGKF Y+ SGGLHGVGISVV Sbjct: 60 KDGSLSVEDNGRGMPVDIHPEY-GQSGIEIILTKLHAGGKFSTDNYQFSGGLHGVGISVV 118 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKA 220 NALS + V V RQ ++ F +G P++PL E + GT + F P+ K F Sbjct: 119 NALSTRVEVEVQRQGNLYQMAFEQGEPVAPLAVLEGKAPKRATGTTVRFWPEAKYFDSP- 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L ++KA L+ +K + EK E+ F GL YL +L++R Sbjct: 178 KFALKALKHNLKAKAVLAAGLKITYIDQ-------INDEKIEWQFENGLVDYLMDELQDR 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVAL 338 ++ + F + R E+AI W E E SY N I T +GGTH +GLR + Sbjct: 231 EILPNPAFVSSGQAD---RAACEFAICWNVEGGEQVQESYVNLIPTAQGGTHVNGLRSGV 287 Query: 339 TRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 T ++++ EL R + + ++D+ ILS+ +EP+F+GQTK +L S +A V Sbjct: 288 TEALREFCELRNLLPRNLKLSAEDVWDGVNYILSLKFQEPQFSGQTKERLSSREAANIVL 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 N +D F +L Q+ A +L E I ++ RL+ ++V RK + LPGKLADC Sbjct: 348 NIAKDAFALWLNQHAEIAMQLAEMAISKAGRRLK--AAKKVERKKIVSGPALPGKLADCV 405 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGGSAKQAR+++ QA++P+RGKILN S+++ +Q++ D+ Sbjct: 406 GQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEVSSDEVLASQEVHDIA 465 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A+G S +LRY K+ I+ DAD DG HIA+LL F + L+E+ HL++ P Sbjct: 466 IAIGVDPGSDDL-SELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 524 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLFRI G YA D+E + IL+ K G +I+RFKGLGEM A QL+ET MD N Sbjct: 525 PLFRIDIGKDVHYALDDEELETILKNVK--GNKNPQITRFKGLGEMNAIQLRETTMDPNT 582 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKF-IQERASFID 682 R L++++++ + L +A +R + RA+ D Sbjct: 583 RRLVQLDLDDAHLTAGLLDKL---LAKKRAADRKTIGLSRRANLAD 625 >gi|262371170|ref|ZP_06064491.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313900|gb|EEY94946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 823 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 228/582 (39%), Positives = 345/582 (59%), Gaps = 19/582 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 S E + + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 SSEDQQAASQTEQTTEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD Sbjct: 62 AIDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 +++Y++SGGLHGVG+SVVNALS +L +T+ R I Q++ G P+ PL + G Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTG 179 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F P + F F+ L + + ++L+ V+ ++ AE F Sbjct: 180 TTVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERIHAE-------HVFD 231 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 + GGL +++ + ++ ++ + G VE A+ W + + + N I Sbjct: 232 YEGGLSEFVKYINQGKTHLNDIFHFTVQAENGI---GVEVALQWNDTYQENVRCFTNNIP 288 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Sbjct: 289 QKDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSS 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNR 440 QTK KLVS + + VE A+ F YL++NP A + +I+ + R RK R Sbjct: 349 QTKEKLVSSEVKPAVEQAMNKSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRR 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K+A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 468 Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF Sbjct: 469 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFF 528 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++M +L+E+ ++++ PPL+++ +G + Y D + + L Sbjct: 529 FRQMPELVERGYIYIAQPPLYKLKKGKQEQYLKDNDALETYL 570 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + L+E +L +G + + + ++ + + + I R+KGL Sbjct: 715 KSWFTLLEDG-AYL--------QKGDRKIAVTN---FHQVWQHILSDSRRGMMIQRYKGL 762 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I + + + LMG + R FI+E A Sbjct: 763 GEMNADQLWETTMDPENRNMLQVTIQDAI----EADRMFSCLMGDDVEPRRAFIEENALN 818 Query: 681 IDDVGT 686 D + Sbjct: 819 AD-IDA 823 >gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129] gi|2501299|sp|P78016|PARE_MYCPN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|1673680|gb|AAB95680.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129] Length = 635 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 234/649 (36%), Positives = 359/649 (55%), Gaps = 30/649 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY ++I+IL+GL+ V+ RPGMYIG TD + HHL E++DN +DEV++G+AN I V L Sbjct: 3 NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +TV DNGRGIP E H ST++ + T LHAGGKFDN +Y+I+GGLHGVG SV Sbjct: 63 HAENQITVSDNGRGIPFETHS-DSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDPKIFGDK 219 VNALSD+L VTV RQ ++ + G + ++ GT +TFRPDPK+F Sbjct: 122 VNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKI 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD+ + + A+L +++ + + EK E F+ G+ YL + Sbjct: 182 H-FDSELIRARLKELAFLFKKLQLTFVDETGSGEK------EVFFTEAGISQYLDELNAD 234 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 I+ +IF TE ++ E+ ++ S+ N+I T EGG+HE+ R ++ Sbjct: 235 SKQIAQKIFVSGTEDDIELEAVFQFIDG---EDEKLLSFANSIRTSEGGSHEASFRQSVG 291 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRT 395 I Y +R + + ++ GI+ V + E F GQTK+KL S + + Sbjct: 292 DVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAV 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP--GKL 453 V+ + F +L +N ++A ++E + + R ++QR++ + + K GKL Sbjct: 352 VQKLTQKHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK-IRNNQQ 512 A ELF+VEGDSAGG+AK R+R QA+LPLRGK+LNV ++K NN++ Sbjct: 412 APAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEE 471 Query: 513 IMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ L+ +G + + D +Y+K+IIMTDAD DGAHI LLLTFFY+ M LIE+ H+ Sbjct: 472 LLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHI 531 Query: 573 FLISPPLFRIT-QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 +L PPL++ + K+ Y E+ ++ + + R+KGLGEM A QL ET Sbjct: 532 YLALPPLYKFEGRDKKARYLWTEQELEQYRAKH-----SHFNVQRYKGLGEMNADQLWET 586 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 M+ R L++V+++ + + K N MG K + R +I+ +F Sbjct: 587 TMNPMTRKLIQVKLDNFIQAEKQI----NVFMGDKTELRKSWIEANINF 631 >gi|262377662|ref|ZP_06070882.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145] gi|262307421|gb|EEY88564.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145] Length = 823 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 344/581 (59%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN+ Sbjct: 2 SSEDQAASQTEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS++L +T+ R I Q++ G PL+ N+ GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 R+ F P + F F+ L + + ++L+ V+ ++ AE F + Sbjct: 180 RVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERINAE-------HVFDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ + TVE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNDIFHFTAAQADN--GITVEVALQWNDSYQENVRCFTNNIPQ 289 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y + K +++ DD I+SV + +P+F+ Q Sbjct: 290 KDGGTHLAGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQ 349 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 350 TKEKLVSSEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRK 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 410 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 469 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +++ ++ ++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 470 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 529 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 530 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 570 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + L+E+ +L +G + + + ++ + + + + I R+KGL Sbjct: 715 KSWFSLLEEG-AYL--------QKGDRKIQVSN---FHQVWQHILQDSRRGMMIQRYKGL 762 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD + R +L+V + + + + LMG + R FI+E A Sbjct: 763 GEMNAEQLWETTMDPDNRNMLQVTVTDAI----EADRMFSCLMGDDVEPRRAFIEENALN 818 Query: 681 IDDVGT 686 D + Sbjct: 819 AD-IDA 823 >gi|209516133|ref|ZP_03264992.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160] gi|209503417|gb|EEA03414.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. H160] Length = 661 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 240/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R + F+ G PLE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVADLSFAHGDVKKPLEVRAAAKGEKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 DPK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIF-------TGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + YL + L+ + +E+ W +AW EE P + SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLMRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G + + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + LMG +A Sbjct: 587 NQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGDLDYDATVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|161594063|ref|NP_899673.2| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472] Length = 796 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 224/571 (39%), Positives = 342/571 (59%), Gaps = 19/571 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A SI++L+GL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+A+ I+ Sbjct: 2 SEQEYGADSIKVLKGLDAVRKRPGMYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD+++Y+ISGGLHGVG Sbjct: 62 VTINPDNSVSVEDNGRGIPTDIHPE-EGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG ++PL RGT +TF + FG Sbjct: 121 VSVVNALSDWLKLKIWRDGKVHEMEFRRGDAVAPLTVTGHTS-HRGTEVTFFASVETFG- 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L K + ++L+ V + E E F F GG+ +++ Sbjct: 179 HIEYHFDILAKRIRELSFLNQGVGIQLIDKRSGKE-------ENFAFSGGVAGFVEYMNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++++ ++F G EK G +VE A+ W + + + N I +GGTH + LR Sbjct: 232 NKTVLHPKVFYGIGEKDG---MSVEVAMQWNDSYQESVQCFTNNIPQRDGGTHMTALRQV 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + ++ E ++ K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 MTRTLNQFIEESEAAKKAKVDTTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454 V + + YL++NP +A + ++E + R RK RE+ R+ + L LPGKLA Sbjct: 349 VNEVISEALKTYLLENPNDAKIICGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 DCQEKDPSLCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVA 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+GC + +Y + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 469 TLITAMGCGIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 + PPL++ G + Y D+ + L + Sbjct: 529 IAQPPLYKAKHGKQERYLKDDGELNQYLLQL 559 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + + L+ K + I R+KGLGEM QL ET MD R LL+V I Sbjct: 700 KRGETVKPVAEFGEALDWLLAEVKKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRI 759 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + D LMG + + R +FI+ A ++ Sbjct: 760 EDVMG----ADDVFTTLMGDEVEPRRQFIEGNALIARNID 795 >gi|254511739|ref|ZP_05123806.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11] gi|221535450|gb|EEE38438.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11] Length = 805 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 227/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEDAQAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVTVKIHADSSVSVSDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F G L+ + ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFEGGETAEHLKVVGECGDRTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ ++ GG+K ++ Sbjct: 181 NTFSNL-EYAFDTLEKRLRELAFLNSGVRIILIDERPAERLETE-----LFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ S+ K E+ VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKTPAMSDPIYIKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP EA ++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPAVEGLMNEKLAEWFEENPNEAKGIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ + Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ L G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDDYLINQGVEG 571 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 722 DLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|221199539|ref|ZP_03572583.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M] gi|221205561|ref|ZP_03578576.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2] gi|221174399|gb|EEE06831.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2] gi|221180824|gb|EEE13227.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD2M] Length = 660 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 239/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|313671974|ref|YP_004050085.1| DNA gyrase subunit b [Calditerrivibrio nitroreducens DSM 19672] gi|312938730|gb|ADR17922.1| DNA gyrase subunit B [Calditerrivibrio nitroreducens DSM 19672] Length = 796 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 236/585 (40%), Positives = 347/585 (59%), Gaps = 19/585 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 ++ ++Y SI++LEGLE VR RPGMYIG D K LHHL EV+DN++DE +AGY I Sbjct: 7 NSENSYSEESIKVLEGLEAVRQRPGMYIGSIDVKGLHHLVYEVVDNSIDEAMAGYCKNIF 66 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G +TV D+GRGIPV HP K T+E+++TTLHAGGKF++ Y SGGLHGVG Sbjct: 67 VTLHVDGSVTVEDDGRGIPVGIHP-TAKKPTVEVVMTTLHAGGKFNSGAYFASGGLHGVG 125 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L VTV R ++ Q++ RGIP++ ++ K +K GT++ F+PD +IF Sbjct: 126 VSVVNALSEYLEVTVKRDGKVYFQRYERGIPVTEFKEIGKT-DKTGTKVRFKPDSEIFET 184 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + A+L+ ++ + + +F F GG+ +Y++ + Sbjct: 185 -TEFHFDSLAKRFRELAFLNSGIRIKAVDE-------ASEKVHDFCFDGGIVSYIKFLNK 236 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWC-EENPEITSYCNTILTDEGGTHESGLRVA 337 + L+ + + + VE AI + + +I S+ N I T+EGGTHE+G + + Sbjct: 237 GKELLFDDPIYVSGKYENV---VVECAILYNTSFDEKIISFVNNIHTEEGGTHEAGFKSS 293 Query: 338 LTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 T+ + K IS+ DD+ I+S+ + EP F GQTK+KL S + V Sbjct: 294 FTKAFNNFINKYNLLKDKISLEGDDVREGMSAIVSIKLNEPMFEGQTKSKLGSSIGKVAV 353 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+ L + +N + K+L+ ++ R RK +E RK A+ LPGKLAD Sbjct: 354 ESVLGSFLPDFFEENSVVVKKILDKAVQAYRAREAARKAKELTRRKNALDISTLPGKLAD 413 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+FIVEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +N +I Sbjct: 414 CQEKDPALSEIFIVEGDSAGGSAKQCRDRRFQAILPLKGKILNVEKARYDKLLSNNEIKT 473 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALGC + + LRY K+IIMTDADVDGAHI++LLLTFF++ M +IE+ L++ Sbjct: 474 IITALGCGIGKEDFDLNKLRYHKIIIMTDADVDGAHISTLLLTFFFRYMRPIIERGFLYI 533 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS--RF 617 PPL++I + Y H+EE + + + G EIS R+ Sbjct: 534 ARPPLYKIKKNKVERYIHNEEEFEDFILDMGLDGVSIPEISEIRY 578 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +I + +Y +E GK + I R+KGLGEM QL ET +D +R Sbjct: 697 IKILVDGEELYFDKVSELVNFIES---RGKKGLTIQRYKGLGEMNPEQLWETTVDPERRV 753 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L RV I ++ + LMG R +FI+E A + ++ Sbjct: 754 LYRVTIED----AEEADGLFSLLMGDVVAPRREFIEENALYAKNID 795 >gi|226939535|ref|YP_002794608.1| DNA topoisomerase IV subunit B [Laribacter hongkongensis HLHK9] gi|226714461|gb|ACO73599.1| ParE [Laribacter hongkongensis HLHK9] Length = 656 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 246/665 (36%), Positives = 359/665 (53%), Gaps = 36/665 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S YD S++R+L+GLEPV+ RPGMY TD H+ EVIDNA DE + G+A I V+ Sbjct: 2 SQIYDESAVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVT 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGV 157 + +G L+V D+GRGIPV HP +E++ T LHAGGKFD Y SGGLHGV Sbjct: 59 VHADGSLSVEDDGRGIPVGLHP-AEGVPVVELVFTRLHAGGKFDKQAGGAYAFSGGLHGV 117 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIF 216 G+SV NALS L V V R +++ FS G + PL + + GTR+ PDP + Sbjct: 118 GVSVTNALSTRLEVEVRRDGSVWQIAFSGGDVVEPLTRTGSCGPRTSGTRVRVWPDP-RY 176 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + L ++ ++KA L V + +K G + + +P GLK+YL Sbjct: 177 FESPRYSLHELERLLRAKAVLLPGVAVTLTVEK----ADGSNDTRTWRYPDGLKSYLTEL 232 Query: 277 LENRSLISSEI---FTGKTEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + ++ E +G WA AW EE SY N I T GGTHE Sbjct: 233 CQGDAPLAPPFAGENYAGAEHDTFAQGEGAAWAFAWFEEGCGGGESYVNLIPTASGGTHE 292 Query: 332 SGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 +GLR + +K + E R + ++++D+ A +LS + +P+F GQTK KL + Sbjct: 293 AGLRTGVFEAMKAFVEHHGLMPRGVKLVAEDVWGRARYVLSARVLDPQFQGQTKEKLNNR 352 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + V +RDPF+++L + + K+ E I++++ RLR +++ +K LP Sbjct: 353 DALKLVAAMVRDPFENWLNTHVEDGKKIAELAIKQAQSRLRSV--KKIEKKKGSGVAVLP 410 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DC ELF+VEGDSAGGSAK AR++ QA+LPLRGK+LN +++ N Sbjct: 411 GKLTDCESEDIERNELFLVEGDSAGGSAKLARDKETQAILPLRGKVLNSWETDRDQLFGN 470 Query: 511 QQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ L+ Sbjct: 471 AEIHDIAVAIGVDPHGAGDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYRHFPALV 530 Query: 568 EQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 H+ + PPLFR+ QG + YA DE + I++ + +G +SRFK Sbjct: 531 AAGHVCVAQPPLFRVDVPGQGKNRPPRKFYALDEAELEGIIDRLRAEKVREGSWSVSRFK 590 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQER 677 GLGEM QLK+T M+ + R LL V + + + L T+ LMG +A R +++ R Sbjct: 591 GLGEMNPEQLKDTTMNPDTRRLLPVRVREGADDL--TRRMFVMLMGKGEAASRRSWMESR 648 Query: 678 ASFID 682 ++ Sbjct: 649 GHEVE 653 >gi|193075924|gb|ABO10501.2| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 822 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|255746897|ref|ZP_05420842.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101] gi|262147220|ref|ZP_06028023.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1] gi|262168411|ref|ZP_06036108.1| topoisomerase IV subunit B [Vibrio cholerae RC27] gi|262189725|ref|ZP_06048086.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93] gi|255735299|gb|EET90699.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101] gi|262023303|gb|EEY42007.1| topoisomerase IV subunit B [Vibrio cholerae RC27] gi|262031351|gb|EEY49962.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1] gi|262034393|gb|EEY52772.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93] Length = 602 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 235/622 (37%), Positives = 343/622 (55%), Gaps = 24/622 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MY TD +HL EVIDN++DE +AGYA+ I+V L + L V+D+GRG+PV+ HP+ Sbjct: 1 MY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQSLEVIDDGRGMPVDIHPE 57 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E+IL LHAGGKF N Y+ SGGLHGVGISVVNALS + V V R ++ Sbjct: 58 -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G ++ L R GT + F PD K F F +RL+ ++KA L ++ Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 ++ E + + GLK YL ++ +L+ E FTG+ + T Sbjct: 176 IIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEA-ATW 227 Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361 SY N I T +GGTH +GLR L ++++ E R + + +D Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + +LS+ +++P+FAGQTK +L S + V ++D F +L + P A +L E Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347 Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I + R+R ++V RK LPGKL DC+ + TELF+VEGDSAGGSAKQA Sbjct: 348 CIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQA 405 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+R QAV+PLRGKILN ++++ +Q++ D+ ALG S E LRY KV I+ Sbjct: 406 RDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCIL 464 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 DAD DG HIA+LL F + L++ H+++ PPL+RI G + YA D++ K+ +L Sbjct: 465 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVL 524 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 E + K K+ + RFKGLGEM QL+ET MD N R L+++ I+ + T + ++ Sbjct: 525 ERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDM 579 Query: 662 LMGTK-ADERFKFIQERASFID 682 L+G K AD+R ++Q + Sbjct: 580 LLGKKRADDRRAWLQRNGDMAE 601 >gi|118578453|ref|YP_899703.1| DNA gyrase, B subunit [Pelobacter propionicus DSM 2379] gi|118501163|gb|ABK97645.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379] Length = 802 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 236/572 (41%), Positives = 345/572 (60%), Gaps = 17/572 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A +I++LEGL VR RP MYIG T LHHL E++DN++DE +AG+ + I V++ Sbjct: 13 EEYSADNIKVLEGLAAVRKRPAMYIGSTSGAGLHHLVYEIVDNSIDEALAGHCDNISVTI 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G +TV+DNGRGIP + HP +S E++LT LHAGGKFDN +Y++SGGLHGVG+SV Sbjct: 73 NVDGSVTVIDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNDSYKVSGGLHGVGVSV 131 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R IF Q + RG P++PL + R RGT++TF PD +IF Sbjct: 132 VNALSKWLELEIKRDGKIFRQSYRRGDPVAPLAETGATRK-RGTKVTFMPDEEIFET-TE 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + + A+L+ V+ S + + EFY+ GG+ ++++ N+ Sbjct: 190 FSFDVLSQRLRELAFLNAGVRIGISDMR------VDNKSHEFYYEGGINSFVEYLNRNKI 243 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + + + EK G E ++ + + +I S+ N I T EGGTH G + ALTR Sbjct: 244 AVHPKPIYFRGEKGGV---ETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTR 300 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA K +SI DDL ++SV I +P+F GQTKTKL + + + VE+ Sbjct: 301 TMNAYAAANNLLKKEKVSISGDDLREGLTCVISVKIPQPQFEGQTKTKLGNSEVKGYVES 360 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457 + + +L +NP A ++LE IE + R R+ RE RK A+ LPGKLADC Sbjct: 361 MINEKLAQFLEENPQVAKRILEKSIEAARAREAARRARETVRRKGALDLGGLPGKLADCQ 420 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV + +K+ ++Q+I L+ Sbjct: 421 EKNPEHCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKSRFDKMISSQEIRTLI 480 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + + LRY ++I+MTDADVDG+HI +LLLTFFY+ M +LI++ HL++ Sbjct: 481 TALGTGIGKDDFDISKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMNELIQRGHLYIAQ 540 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G K +Y +E Q L E Sbjct: 541 PPLYKVKRGKKEMYLRNEAALQNFLLEEGAED 572 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++L F ++ K + I R+KGLGEM QL ET M+ R LL+V+I + S + Sbjct: 718 EELLVYFLENAKKGLGIQRYKGLGEMNPDQLWETTMNPENRVLLQVKIEDAVES----DE 773 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + D R +FI+ A + ++ Sbjct: 774 IFTILMGDQVDPRREFIETNALNVVNLD 801 >gi|167562025|ref|ZP_02354941.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis EO147] gi|167569283|ref|ZP_02362157.1| DNA topoisomerase IV subunit B [Burkholderia oklahomensis C6786] Length = 660 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 361/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHPDQSVSVEDDGRGIPFGLHPE-ERVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQAAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ + +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPTGELQRLLRSKAVLLPGVEVVFVNEK-------TGERQSWRYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL + L+ + + W +AW EE SY N I Sbjct: 229 RGYLLEGMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDLARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G S +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ + + + T + + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPIALGD--LDFEATVERMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNDVE 657 >gi|167718666|ref|ZP_02401902.1| DNA topoisomerase IV subunit B [Burkholderia pseudomallei DM98] Length = 660 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGRIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDATFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRES 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNEVE 657 >gi|239503906|ref|ZP_04663216.1| DNA gyrase, B subunit [Acinetobacter baumannii AB900] Length = 822 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|161524095|ref|YP_001579107.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC 17616] gi|189351148|ref|YP_001946776.1| DNA topoisomerase IV subunit B [Burkholderia multivorans ATCC 17616] gi|160341524|gb|ABX14610.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia multivorans ATCC 17616] gi|189335170|dbj|BAG44240.1| topoisomerase IV subunit B [Burkholderia multivorans ATCC 17616] Length = 660 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 239/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCEAEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|46446709|ref|YP_008074.1| DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25] gi|46400350|emb|CAF23799.1| probable DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25] Length = 835 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 232/585 (39%), Positives = 327/585 (55%), Gaps = 21/585 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YDASSI +LEGL+ VR RPGMYIG T LHHL EVIDN +DE +AGY I+V L Sbjct: 16 KEYDASSITVLEGLQAVRERPGMYIGDTGVNGLHHLVYEVIDNCIDEAMAGYCTAIDVVL 75 Query: 102 DGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + +++ D+GRGIPVE H + S +E+++T LHAGGKFD TY++SGGLHG Sbjct: 76 HKDNSISIEDDGRGIPVERHENESRKQGREVSAIEVVMTILHAGGKFDKDTYKVSGGLHG 135 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS ++ V V + + +FS+G + P++ + RGT++ F PDP++ Sbjct: 136 VGVSCVNALSKKMIVQVCKNGLMHEIEFSQGKVVKPVQVIGETTK-RGTKVWFWPDPEVM 194 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD L K + A+L+ + + EK+ E F + GGL +++ Sbjct: 195 TT-IDFDYDILAKRFRELAFLNKGINIFFRD-----EKHAEKEDVNFCYQGGLSSFVSYL 248 Query: 277 LENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 EN+ + S K G E A+ W + I SY N I T +GG+H +G Sbjct: 249 NENKEPLFSNPIYFHGVKPGDDAPIEFEVAMQWNDGYSETIFSYVNNIPTRQGGSHLTGF 308 Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ALTR + Y + ++ I +D+ ++SV + P+F GQTK +L + D Sbjct: 309 STALTRVLNNYIKNHNLLKSDKISINGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDV 368 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451 V+ + + +L +NP A + + I ++ R RK RE+ RK+A+ RLPG Sbjct: 369 GSVVQQIVGEELAIFLDENPSMAKLITDKAIIAAQAREAARKARELTLRKSALDSARLPG 428 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC + E++IVEGDSAGGSAK R+R QA+LP+RGKILNV A EK+ N Sbjct: 429 KLTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNT 488 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ +V ALGC E LRY KVIIMTDADVDG+HI +LLLTFFY+ M L+E Sbjct: 489 EVGTMVAALGCGIGKDGFNLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALVENN 548 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 +++ PPL+R+++ S Y H E L E G I+I Sbjct: 549 FIYIAQPPLYRVSRKKTSRYIHSEREMDDYLLEL---GLSDIQIK 590 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K+ + +++++ + +G+ IEI R+KGLGEM A QL ET MD KRTL+ Sbjct: 738 VEEGGKTYTYYT---LREVIDFLRNNGRKGIEIQRYKGLGEMNADQLWETTMDPVKRTLI 794 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + + LMG R FI++ A + ++ Sbjct: 795 KVTLPDVI----AADHMFTMLMGEDVPPRRAFIEQHALSVKNLD 834 >gi|320093848|ref|ZP_08025690.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 178 str. F0338] gi|319979199|gb|EFW10700.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 178 str. F0338] Length = 705 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 240/704 (34%), Positives = 352/704 (50%), Gaps = 63/704 (8%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +Q+ + +Y A + +LEGLE VR RPGMYIG TD K L H E+IDNA+DE + G+ Sbjct: 3 PVSQTKASDYSARHLSVLEGLEAVRKRPGMYIGSTDHKGLMHCLWEIIDNAVDEALEGHC 62 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I+V L + +V DNGRG+PV+ P S +E++ T LHAGGKF +Y +GGL Sbjct: 63 DTIDVRLHPDHSASVSDNGRGVPVDEVP-GIGLSGVEVVYTKLHAGGKFGGGSYGAAGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLE 194 HGVG SVVNALS + V V R + + F RG P S L+ Sbjct: 122 HGVGASVVNALSARMDVQVDRGSKTYEMCFRRGEPGEFDDSRQRTPNSPFTPFTDQSRLK 181 Query: 195 KKEKVRN-KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 KV+ K GTR+ F D +IF GF LL + A+L + E Sbjct: 182 TVGKVKRTKTGTRVRFWADFQIFPATEGFSWESLLARARQTAFLVPGLTINCVD-----E 236 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR-------------- 299 + E F F GG+ + + + + G+ T + Sbjct: 237 RGEEERSESFRFDGGVVDFANWLATDGPVTDTWHIMGEGAYTETVQVLDADTGHLTASEL 296 Query: 300 ---GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK--- 352 +V+ A+ W + S+ N I T +GGTH +G A+ R ++ + K Sbjct: 297 ERVCSVDIALRWGIGYDTSVRSFVNIIATPKGGTHVAGFEQAVLRVLRAQIDKNSRKLKV 356 Query: 353 --RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY--- 407 + DD++ +++V EP+F GQTK L + + V + D Sbjct: 357 GAKDGRPEKDDVLAGMTAVVTVRFPEPQFEGQTKEILGTPQIRSVVSKVVGDWLGAKLAS 416 Query: 408 -LVQNPIEATKLLEWVIERSEERLRRRKQREVNR-KTAIRKLRLPGKLADCSQNIAHGTE 465 + +A++L+E V+ + R+ R +E++R K A+ LP KLADC TE Sbjct: 417 PKRDDKQQASQLMEKVVGEMKARVSARIHKEISRKKNALETSSLPAKLADCRLADVAETE 476 Query: 466 LFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR 525 LFIVEGDSA G+AK ARN QA+ P+RGKILNV A + + N + +++Q +G + Sbjct: 477 LFIVEGDSALGTAKAARNSHYQALFPIRGKILNVQKASTADMLANAECANIIQVIGAGSG 536 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI--- 582 + E RY KVI+MTDADVDGAHI +LLLT F++ M ++E ++ PPL RI Sbjct: 537 RTFDLESARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMVEAGRIYAAVPPLHRIEVA 596 Query: 583 ---TQGTKSVYAHDEEHKQKILEEFKKHGK-GKIEISRFKGLGEMLASQLKETAMDANKR 638 + + VY + E+ + L +K G+ K I R+KGLGEM A QL ET MD R Sbjct: 597 GKGRRKREYVYTYSEDELHRRLAALRKSGRTWKEPIQRYKGLGEMDADQLAETTMDRAHR 656 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 +L R+ + + +L+ +D LMG+ R +FI E ++ +D Sbjct: 657 SLRRITLADE-EALRRAEDVFELLMGSTVGPRREFIVEESAGLD 699 >gi|269799056|gb|ACZ43806.1| DNA gyrase subunit B [Moritella viscosa] gi|269799060|gb|ACZ43808.1| DNA gyrase subunit B [Moritella viscosa] Length = 805 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 352/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I +Q + G+P P+ + V + GT + F P + F + Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYEGGIKAFVDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 233 NKTPINKDAFHFSVERED--GITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE A+ + YL++NP EA+ ++ +I+ S R RK RK A+ LPGKL Sbjct: 351 AVEQAMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G Sbjct: 531 YIAQPPLYKMKKGKQERYIKDDADLTQYLTTIALDDAG 568 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + + L K I R+KGLGEM SQL ET MD R +L Sbjct: 708 IKRGEKSREVTN---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R +FI+E A + ++ Sbjct: 765 QVRIEDAV----AADQLFTTLMGDHVEPRREFIEENALKVANLD 804 >gi|322514536|ref|ZP_08067569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae ATCC 25976] gi|322119475|gb|EFX91562.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae ATCC 25976] Length = 810 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 237/588 (40%), Positives = 355/588 (60%), Gaps = 20/588 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + Q+ +++YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS +L +T+ R+ ++ Q +S G P +PL +K GT + F P Sbjct: 120 LHGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWPSL 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 IF +K F+ L K + ++L+ V +++ E E F + GG+K Y+ Sbjct: 179 DIFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE-------EHFKYEGGIKAYV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E ++ I + F TEK G VE ++ W + + + N I +GGTH + Sbjct: 232 EYLNEGKTHIHNTPFYLSTEKDGI---GVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLA 288 Query: 333 GLRVALTRGIKKYAELTQNKR----AISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 G R ALTR +K Y + + + I DD V ++SV + +P+F+ QTK KLV Sbjct: 289 GFRGALTRALKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLV 348 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKL 447 S + + VE+++ + YL +NP +A ++ +I+ + R RK R RK A+ Sbjct: 349 SSEVRGAVESSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLG 408 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 L GKLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ Sbjct: 409 GLLGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKM 468 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q++ L+ ALG R Y E LRY K+IIMTDADVDGAHI +LLLTFFY++M +L Sbjct: 469 LSSQEVATLITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEL 528 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEI 614 IE ++++ PPL+++ +G + Y D + + + G G I Sbjct: 529 IENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVI 576 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ + + + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 726 FAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAI----AAD 781 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A + + Sbjct: 782 KLFSTLMGDEVEPRRDFIESNALYA-QLD 809 >gi|159464611|ref|XP_001690535.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii] gi|158280035|gb|EDP05794.1| DNA gyrase subunit B-like protein [Chlamydomonas reinhardtii] Length = 649 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 233/657 (35%), Positives = 348/657 (52%), Gaps = 31/657 (4%) Query: 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD-GNGFLT 108 ++LEGLEPVR RPGMYIGGT LHHL EV+DNA+DEV AG+A+ +EV +D +G+++ Sbjct: 1 QVLEGLEPVRKRPGMYIGGTGSDGLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWVS 60 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVVNALS 166 VVDNGRGIPV+ HP KS LE +LT LHAGGKF Y++SGGLHGVGISVVNALS Sbjct: 61 VVDNGRGIPVDVHP-VTGKSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALS 119 Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKK-----EKVRNKRGTRITFRPDPKIFGDKAG 221 EL VTV R + +SQ++SRG PL L + + + GT++ F D IF Sbjct: 120 SELEVTVWRAGSRYSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVA 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + A + A+L+ R + + + + F + GGL+ ++ + Sbjct: 180 YSADVIATRLHELAFLNARATIRFRALRRGK---PEGQWQVFQYSGGLREFVGCLQAAYT 236 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + + + + A E+ + N+I T +GGTH GLR LTR Sbjct: 237 PLHEALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRA 296 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + + + + + + ++SV + PEF GQTKT+L + + ++ VENA Sbjct: 297 VTQLGRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENA 356 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR---EVNRKTAIRKLRLPGKLADC 456 + + +L +P L + + RK R + LPGKLADC Sbjct: 357 VYEAVGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADC 416 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK--IRNNQQIM 514 + TE++IVEGDSAGGSAKQAR+R QA+LPL+GKILNV + N +I Sbjct: 417 TSTNREETEIYIVEGDSAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEIS 476 Query: 515 DLVQ-----ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +L+ +G R+R + L Y K++++TDADVDGAHI +LLLTF ++ L Sbjct: 477 NLIALGYERTVGVRSRCHAFKL-LLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAA 535 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 +++ PPL+++ +G +AH + ++ E ++ G + RFKGLGEM+ QL Sbjct: 536 GRVYVAVPPLYKVERGKSVWWAHSDAELAALVSE-QRLAPGGYSVQRFKGLGEMMPQQLW 594 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 +T ++ R L R+ + + + + LMGTK + R I+ + + + Sbjct: 595 DTTLNPESRLLRRLTV----RDVSEADSMLTMLMGTKVEPRKALIEAYSRRLS-LDA 646 >gi|27375934|ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] gi|27349072|dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 244/582 (41%), Positives = 344/582 (59%), Gaps = 12/582 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + +PA S +Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQTPAENEPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A ++V L+ + +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHATRVDVVLNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + + R N +F+ G ++PL KRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF P F + +D A L + A+L+ V S + EK EE + Sbjct: 181 TEVTFLASPDTFKNI-EYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKR-----EEMH 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG++ +++ N+ I + E G VE A+ W + E + N I Sbjct: 235 YSGGVEEFVKYLDRNKKAIVPAPIMVRAEANGI---GVEAALWWNDSYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YAE K I++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLVS + + VEN L + + ++P EA ++ VI+ + R RK RE+ RK+ Sbjct: 352 KDKLVSSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELTRKSP 411 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 412 LSVSSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVR 471 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +K+ ++QI L+ ALG ++ E LRY K+I+MTDADVDGAHI +LLLTFFY++M Sbjct: 472 PDKMLGSEQIGTLITALGTGISDEFSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQM 531 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 D+I+ +L++ PPL+++++G Y DE + L E Sbjct: 532 RDIIDGGYLYIAQPPLYKVSRGKSEQYLKDERALEDYLIETG 573 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM QL ET +D N R+LL+V++ + + D Sbjct: 729 DLFEAVTDAGRKGVTLQRYKGLGEMNPEQLWETTLDTNARSLLQVKV----KEVDEADDI 784 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R FIQE Sbjct: 785 FTKLMGDVVEPRRDFIQEH 803 >gi|167835907|ref|ZP_02462790.1| DNA topoisomerase IV subunit B [Burkholderia thailandensis MSMB43] Length = 660 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGFG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHPDQSVSVEDDGRGIPFGLHPE-EKVPVVEIVFTRLHAGGKFDKAKGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAQLGFADGDVVKPLATQGAGRGEKKSGTRVTV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQSWKYDDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRTGDDTFAEGEGASWVVAWSEEGSLARESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKIEKKKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDVSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+F+ PPLFR+ +G K +YA D+ + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRES 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVAL--GELDFEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRNWLEEKGNEVE 657 >gi|114045517|ref|YP_736067.1| DNA gyrase subunit B [Shewanella sp. MR-7] gi|113886959|gb|ABI41010.1| DNA gyrase subunit B [Shewanella sp. MR-7] Length = 805 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R+ + Q ++ G+P P++ GT I F P + F D Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804 >gi|86147178|ref|ZP_01065494.1| DNA gyrase subunit B [Vibrio sp. MED222] gi|218708101|ref|YP_002415722.1| DNA gyrase subunit B [Vibrio splendidus LGP32] gi|85835062|gb|EAQ53204.1| DNA gyrase subunit B [Vibrio sp. MED222] gi|218321120|emb|CAV17070.1| DNA gyrase subunit B [Vibrio splendidus LGP32] Length = 805 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 232/566 (40%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I V Sbjct: 2 SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDSSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q +S G P +PL +K GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEETFTNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF +E+ TVE A+ W + I + N I +GG H +G R AL Sbjct: 233 KTPIIQKIFHFDSERDD--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K S DD I+SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + +L++NP EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + L K + + + R+KGLGEM QL ET MD R ++ Sbjct: 708 IKRGERTQEVSS---FVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+E A + ++ Sbjct: 765 QVTIEDAVG----ADLLFTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|187927924|ref|YP_001898411.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12J] gi|187724814|gb|ACD25979.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12J] Length = 661 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 253/673 (37%), Positives = 361/673 (53%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSI++L+GLEPV+ RPGMY T H+ EVIDN+ DE + GY LI Sbjct: 2 SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D+ RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + P K E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + ++ E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVTLTLER-------TGETLEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322 L S I + E E W +AW EE SY N I Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI++ ++ + PPL+R+ +G K +YA D+ + I ++ +K G +G Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKEG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V + + T + +N LMG +A Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|113968350|ref|YP_732143.1| DNA gyrase subunit B [Shewanella sp. MR-4] gi|113883034|gb|ABI37086.1| DNA gyrase subunit B [Shewanella sp. MR-4] Length = 805 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVRDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R+ + Q ++ G+P P++ GT I F P + F D Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATK-TGTEIRFWPSEETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQ 571 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLD 804 >gi|207743677|ref|YP_002260069.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum IPO1609] gi|206595076|emb|CAQ62003.1| dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum IPO1609] Length = 661 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 252/673 (37%), Positives = 356/673 (52%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ LI Sbjct: 2 SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFGKLIA 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + K E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRVWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322 L S I + E E W +AW EE SY N I Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++ +D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI +++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFGRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG-- 610 F++ LIE+ ++ + PPL+R+ +G K +YA D+ + I ++ +K G Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V I + + T + +N LMG +A Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVNMMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|255068060|ref|ZP_05319915.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256] gi|255047658|gb|EET43122.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256] Length = 834 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 229/596 (38%), Positives = 341/596 (57%), Gaps = 24/596 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 45 EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 104 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 105 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 163 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL+ +K+GT + F + FG+ Sbjct: 164 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 221 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V +++ + E F GG+ ++Q + Sbjct: 222 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 274 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 275 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 331 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 332 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 391 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 392 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 451 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 452 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 511 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 512 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 571 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL++ G + Y DE K + L + R + ++L +T Sbjct: 572 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 622 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L ++ + + I R+KGLGEM QL ET MD R L Sbjct: 736 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 792 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 793 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 834 >gi|116619148|ref|YP_821304.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|116222310|gb|ABJ81019.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076] Length = 815 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 229/631 (36%), Positives = 360/631 (57%), Gaps = 31/631 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + YD+SSI++LEGLE VR+RP MYIG T E LHHL EV+DN++DE +AGYA IEV++ Sbjct: 13 NVYDSSSIKVLEGLEAVRLRPAMYIGSTGEMGLHHLVYEVVDNSVDEALAGYATHIEVTI 72 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV D+GRGIPV H + S ++++T LHAGGKFD+++Y++SGGLHGVG+S Sbjct: 73 HDDNSVTVEDDGRGIPVGIHEE-EGVSAAQVVMTKLHAGGKFDSNSYKVSGGLHGVGVSC 131 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS++L + + R+ ++Q++S G P + L + K + GTR+TF+PD I Sbjct: 132 VNALSEKLELEIWREGYTWTQEYSCGKPKADLVRAGKAGKRTGTRVTFKPDSTIMEVAV- 190 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + + A+L+ +K + ++ EK F + GG+ +++ +S Sbjct: 191 FNYDTLAQRLRELAFLNKGLKITLTDERVDPEKVT-----PFEYQGGISEFIKHLNRGKS 245 Query: 282 LISSEIFTGKTEKKGTHRGTV--EWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVAL 338 ++ + + E++ +GT+ E A+ + + E S+ N I T +GGTH SG R AL Sbjct: 246 VLHEKPIHFEAEREMPEKGTITMEVALQYNDAYSENVFSFANNINTVDGGTHLSGFRSAL 305 Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I + + + + ++ DD+ ++SV + +P+F GQTK KL + D + Sbjct: 306 TRTINAFGQKNGLFKDVKENLSGDDVREGLTAVVSVKVPQPQFEGQTKGKL-NSDIAGYM 364 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + D Y +N K++ IE S R RK R+ RK A+ LPGKLAD Sbjct: 365 TQFVNDKLSEYFDKNSAVGRKIVGKAIEASRAREAARKARDLTRRKGALDSGGLPGKLAD 424 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + ELF+VEG+SAGG+AKQ R R QA+LPL+GKILNV A +K+ +++I Sbjct: 425 CQEKDPKLCELFLVEGESAGGTAKQGRERRFQAILPLKGKILNVEKARYDKMLGHEEIRC 484 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 ++ ALG + LRY+K+IIMTDADVDG+HI +LLLTFF++ M +LI + +++ Sbjct: 485 MITALGTGIGKDDFDVAKLRYDKIIIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYI 544 Query: 575 ISPPLFRITQGTKSVYAHDEEHK---------QKILEEFKKHGKGKIEISRFKGLGEMLA 625 PPL+RI +G Y DE+ + + E +G GK + S + Sbjct: 545 AQPPLYRIKKGKSEKYIKDEKEFTKEIMRRATENLTVEIHSNGDGKPKSS-------LEG 597 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +L+ ++ ++ + ++ + L + Sbjct: 598 QELRTFLLNLDEFQQIFHKVERRLRDSRAVD 628 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 15/129 (11%) Query: 560 YQEMYDLIEQKHLFLI---SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616 Y+ L + PP + + A + ++LE K GK + R Sbjct: 698 YRRFRALART----IAKFNEPPFVVVK--NEHRDAQPD--WVELLEYVKNEGKKDASVQR 749 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM A QL +T M+ KRTLL V + + ++ + LMG + R KFI+E Sbjct: 750 YKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQC----EEIFSTLMGEDVESRRKFIEE 805 Query: 677 RASFIDDVG 685 A + ++ Sbjct: 806 NALDVKNLD 814 >gi|253996177|ref|YP_003048241.1| DNA topoisomerase IV subunit B [Methylotenera mobilis JLW8] gi|253982856|gb|ACT47714.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera mobilis JLW8] Length = 661 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 237/671 (35%), Positives = 350/671 (52%), Gaps = 42/671 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDA S+++L GLEPVR RPGMY T + H+ EVIDNA DE + G+A IEV Sbjct: 2 AEKEYDADSVKVLRGLEPVRARPGMY---TRTDSPTHIVQEVIDNAADEALGGHATNIEV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155 ++ +G + V DNGRGIPVE PK + +E++ LHAGGKFD NS+Y SGGLH Sbjct: 59 TVYKDGAVEVTDNGRGIPVEI-PKGETQPAVELVFVQLHAGGKFDKEDENSSYRFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214 GVG+SV NALS L V V R + F G + PL + K + GT + PDPK Sbjct: 118 GVGVSVTNALSTRLEVKVKRGGKVHGLIFENGHCVEPLAEVGKCLKRDTGTTVKCWPDPK 177 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F +L + +SKA L V S + + + + GL YL Sbjct: 178 YFDS-PKVSIQQLEHLIKSKAVLLRGVSVSLSIEGTDGFEERT-----WTYADGLPQYLD 231 Query: 275 TKLENRSLISSE--------IFTGKTEKKGTHRGT-VEWAIAWCEENPEITSYCNTILTD 325 + R + E F + G +G WA+++ SY N I T Sbjct: 232 ELIGEREIADDEVPVPIIAGEFYHQENTDGISKGEGAIWALSFGPGGGRGESYVNLIPTL 291 Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHE+G+R + +K + E +R + + S+D+ + +L+ + +P+F GQTK Sbjct: 292 SGGTHEAGMRNGVFEAVKSFMEHHSMMQRGVKVSSEDVWNNVYYVLAAKVLDPQFQGQTK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 KL + DA + V +A++ + +L QN A ++ + V + R + ++ E + T I Sbjct: 352 EKLTNRDAMKMVASAVKPMMETWLTQNVDHAKRISDLVNRSAAARNKSTQKIEKRKTTGI 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 +P KL DC ELF+VEGDSAGGSAK RN Q++LPLRGK+LN + Sbjct: 412 N--LMPAKLTDCEAAGTMEAELFLVEGDSAGGSAKMGRNNEFQSLLPLRGKVLNTWEVDA 469 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +I N ++ D+ ALG + D LRY K+ I++DADVDG+HI LLLT + Sbjct: 470 GRIFANSEVHDIFVALGIEPHTLKDNPDFSGLRYGKLCILSDADVDGSHIQVLLLTMLLR 529 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKI 612 LIE+ H+++ PPL+RI QG + +Y D+ K ++E+ K+ G + K+ Sbjct: 530 HAPKLIERGHVYISQPPLYRIDVPAQGKNKPLRKIYVSDDVEKMSMIEKLKREGIAEEKL 589 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK-ADERF 671 I RFKGLGEM QL ET + + R L++V + + S + + LM + R Sbjct: 590 SIQRFKGLGEMNPEQLWETTLCPDTRRLIQVRLPEGEVS--EALKMFDMLMAKNESASRK 647 Query: 672 KFIQERASFID 682 ++++ R + ++ Sbjct: 648 EWMERRGNDVE 658 >gi|294054231|ref|YP_003547889.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221] gi|293613564|gb|ADE53719.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221] Length = 846 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 226/600 (37%), Positives = 332/600 (55%), Gaps = 22/600 (3%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEV 81 ++ E + + + D YD+S I+ LEGLE VR RP MYIG T+E+ LHH E+ Sbjct: 2 SDQELPENSTADSAQKNAQPDVYDSSKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEI 61 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGG 141 +DN++DE +AG+ + I VS+ +G ++ D+GRGIPV+ HPK+ LE+++T LHAGG Sbjct: 62 VDNSIDEALAGHCSQITVSIHNDGSCSIEDDGRGIPVDIHPKY-QIPALELVMTNLHAGG 120 Query: 142 KFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 KF Y++SGGLHGVG VNA+S+ V V R + +FSRG+ ++ + + Sbjct: 121 KFGKGAYQVSGGLHGVGAKCVNAVSEWFEVEVRRDGKVHKMEFSRGLTTQKMKIIGETKR 180 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 GTRI F PDP+IF F L K + A+L+ +K ++ ++ + + E Sbjct: 181 -TGTRIAFSPDPQIFEATREFKYELLGKRLRELAFLNPGIKIIFTDER-------VSKTE 232 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-----KGTHRGTVEWAIAWCEENPEI- 315 EF F G+ Y+ EN+++I + + E V+ A + + + Sbjct: 233 EFIFKDGIAEYVSFLNENKNIIHPDPISFHGEAPTPNPDLDANIVVDIAFQYNDGYSDQI 292 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 SY N+I EGGTH SG R ALTR I YA+ + ++ DD ++SV Sbjct: 293 YSYANSIHNIEGGTHLSGFRTALTRVINAYAKQNGLLKDKDPNLSGDDAREGLTAVISVK 352 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP F GQTKTKL + + V+ + Y NP A KL++ + + R R Sbjct: 353 VPEPRFEGQTKTKLSNGEVDGIVQKITGEELKFYFETNPQVAKKLIDKCLNAARAREAAR 412 Query: 434 KQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLR 493 K RE RK A+ LPGKLADCS +EL+IVEGDSAGGSAKQ R+R+ QA+LP+R Sbjct: 413 KARETVRKGALSTGGLPGKLADCSSKDPSVSELYIVEGDSAGGSAKQGRDRATQAILPIR 472 Query: 494 GKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDG 548 GK+LNV A +K+ N +I L+ A+G + RY K+I+MTDADVDG Sbjct: 473 GKLLNVEKARLDKVLGNNEIRSLITAVGTGIGDHEGDGAFDVSKARYHKIILMTDADVDG 532 Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 AHI +LLLTF +++M LIE ++++ PPL++I + + Y ++ +IL E Sbjct: 533 AHIMTLLLTFLFRQMKGLIEAGYVYIAQPPLYKIKRKRREQYVDNDPQLNRILLELGSED 592 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++++ + G+ + I R+KGLGEM QL ET MD R LL+V+I + Sbjct: 763 ELVDNIRAIGRRGLSIQRYKGLGEMNPKQLFETTMDPKSRRLLKVDIADAAAADG----I 818 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG R FI++ A + + Sbjct: 819 FSMLMGEDVPSRRAFIEDNALNVSHLD 845 >gi|221211613|ref|ZP_03584592.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1] gi|221168974|gb|EEE01442.1| DNA topoisomerase IV, B subunit [Burkholderia multivorans CGD1] Length = 660 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 238/673 (35%), Positives = 357/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R + F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKLAELGFADGDVVKPLSTQPAGRGEKKSGTRVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSAN-LPLGELQRLLRSKAVLLPGVEVVLVNEKS-------GERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDSVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRET 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYETTVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|197334084|ref|YP_002154784.1| DNA gyrase, B subunit [Vibrio fischeri MJ11] gi|197315574|gb|ACH65021.1| DNA gyrase, B subunit [Vibrio fischeri MJ11] Length = 805 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 226/566 (39%), Positives = 345/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDNSVSVSDDGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R I Q + G P +PL K + GT+I F P + F + Sbjct: 121 SVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEETFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F + GG++ ++Q N Sbjct: 180 V-FVYEILAKRLRELSFLNSGVSIKLQDMRE------EDKADHFMYEGGIQAFVQHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I ++F +E++ +VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHQKVFHFDSERED--GISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K + DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 ESAMGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMAEY 556 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L K + + R+KGLGEM QL ET MD R +++V IN + Sbjct: 720 FEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAV----AAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+E A + ++ Sbjct: 776 ELFTTLMGDQVEPRRNFIEENALRVSNLD 804 >gi|307942709|ref|ZP_07658054.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4] gi|307773505|gb|EFO32721.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4] Length = 817 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 241/581 (41%), Positives = 348/581 (59%), Gaps = 16/581 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 +PD F + + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 4 TSLPDQTPFDDPNQGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+ + V L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD Sbjct: 64 IDEALAGHADHVTVCLNADGSVTVADNGRGIPTDVHSE-EGVSAAEVIMTQLHAGGKFDQ 122 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R + +F+ G ++PL+ ++GT Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTKLELRIWRNDQEHHMEFAHGEAVAPLKVVGPANGQKGT 182 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++TF P P+ F FD L + A+L+ V+ + + + E+ EE Y+ Sbjct: 183 QVTFLPSPETFTKT-EFDFGTLEHRLRELAFLNSGVRIILTDKRGVEERA-----EELYY 236 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + T TEK G TVE A+ W + E + N I Sbjct: 237 EGGLEAFVRYLDRAKHPLIETPITISTEKDGI---TVEAAMWWNDSYHEQVLCFTNNIPQ 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + YAE T K +S+ DD +LSV + +P+F+ Q Sbjct: 294 RDGGTHLAGFRAALTRQVTGYAESTGLLKKEKVSVTGDDCREGLTCVLSVKVPDPKFSSQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS + + VE+ + + +NP A ++ V+E + R RK RE RK Sbjct: 354 TKDKLVSSEVRPVVESQMSQALSEWFEENPAPAKAVVSKVVEAASAREAARKARELTRRK 413 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + A ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV Sbjct: 414 GALDIASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ +I L+ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF+ Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E ++++ PPL+++T+G Y D+ + L Sbjct: 534 RQMPELVENGYIYIAQPPLYKVTRGKSEQYLKDQAALENYL 574 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L++ G+ I + R+KGLGEM QL ET +D N R+LL+V++ D D Sbjct: 733 RALLQQIFAFGQKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 788 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + D R +FIQ+ A + ++ Sbjct: 789 IFTKLMGDEVDPRREFIQDNALNVANLD 816 >gi|261378453|ref|ZP_05983026.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685] gi|269145238|gb|EEZ71656.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685] Length = 796 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 224/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSNWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE K + L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++ L+ ++ + + I R+KGLGEM QL ET MD + R LL+V I + Sbjct: 706 YPVGSFEEALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAI-- 763 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + + R FI+ A ++ Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|119773158|ref|YP_925898.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella amazonensis SB2B] gi|119765658|gb|ABL98228.1| DNA gyrase subunit B [Shewanella amazonensis SB2B] Length = 805 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 224/575 (38%), Positives = 346/575 (60%), Gaps = 18/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R + Q ++ G+P +P++ GT + F P + F D Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDATK-TGTEVRFWPSEETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ +++ Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISAFVEYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ +IF E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDIFHFAQERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289 Query: 338 LTRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMEAEGYNKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + YL++NP +A ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLGDYLLENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G Y D+ + L G Sbjct: 530 IAQPPLYKVKKGKHEQYLKDDPALTEFLTTGALDG 564 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K + L+ K + I R+KGLGEM QL ET MD R +L Sbjct: 708 VQRGEKVKPVTS---FIEALDWLVGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A + ++ Sbjct: 765 QVTIEDAI----AADQLFTCLMGDQVEPRRDFIEANALNVANLD 804 >gi|254439392|ref|ZP_05052886.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307] gi|198254838|gb|EDY79152.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307] Length = 805 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 226/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 Q + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 4 EQQKPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V + +G ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 AVNVKIHDDGSVSVSDNGRGIPVGIH-EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R +F G + LE ++ GT + F Sbjct: 123 GVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASLDT 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ F L K + A+L+ V+ + ++ E Y+ GG+K +++ Sbjct: 183 FSNR-EFYFETLEKRLRELAFLNSGVRIILTDER-----PAEHLVSELYYDGGVKEFVKY 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +++ I E E+ VE A+ W + E+ + N I +GGTH +G Sbjct: 237 LDRSKTSILPEPIYVIGERDEI---VVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGF 293 Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + + DD +LS+ + +P+F+ QTK KLVS + Sbjct: 294 RAALTRTINNYAQSSGIAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VEN + + + +NP A ++ ++E + R RK R+ RKTA+ L G Sbjct: 354 RPAVENIMNEKLSEWFEENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ +Q Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 474 EIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIERG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 HL++ PPL+++++G VY D+ L E G Sbjct: 534 HLYIAQPPLYKVSRGKSEVYLKDQAAMNDYLTEQGVEG 571 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ + G+ + + R+KGLGEM SQL ET +D + RTLL+V++ + + D Sbjct: 722 DLLKAVLEEGERGLSLQRYKGLGEMNPSQLWETTLDPDARTLLQVKVED----VAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLD 804 >gi|223997382|ref|XP_002288364.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335] gi|220975472|gb|EED93800.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335] Length = 678 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 253/688 (36%), Positives = 348/688 (50%), Gaps = 51/688 (7%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYAN 95 + ++ + Y A+ I +L GLEPVR RPGMYIG T LHHL EV+DN++DE +AG+A+ Sbjct: 3 STEAINGAYSANQITVLSGLEPVRKRPGMYIGSTGPDGLHHLVYEVLDNSVDEALAGHAS 62 Query: 96 LIEVSLDG-------------NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 +I + L T+ D+GRGIP + HP S LE +LT LHAGGK Sbjct: 63 MISMVLHDAPGVDDSGENEKVGNCCTITDDGRGIPTDLHP-TTKISALETVLTVLHAGGK 121 Query: 143 FDN----STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE- 197 FDN S Y++SGGLHGVGISVVNALS+ + V V R + ++ Sbjct: 122 FDNSQQGSGYKVSGGLHGVGISVVNALSEFVEVRVDRGSKSAENDIENTSSVAYKTSLVQ 181 Query: 198 --KVRNKRGTRITFRPDPKIF-----GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 + K GT +TF PD +F FDA+RL AYL+ + + Sbjct: 182 KLYSQRKAGTTVTFLPDITVFKGVNGKPDITFDASRLASRMDEIAYLNAGLVLTLQDKRI 241 Query: 251 IAEKYGIPEKEE---FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 ++ + + + F+ T L S S I R + Sbjct: 242 LSGRSKVDKSNIVTVFHHADDGATLLFHGTITPSSSSPGIQQLPITIDAALR------YS 295 Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMIS 365 + I S+ N I T +GG+H GL+ LTR + + A + ++ D + Sbjct: 296 ANTYSENILSFVNNIRTKDGGSHVEGLKSCLTRTLNQSARRLGKLKDGDSNLSGDFVREG 355 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + EPEF GQTK +L + + + VE AL + NP + E Sbjct: 356 LTAIISVSVSEPEFEGQTKGRLGNPEVRPAVETALGAELTKFFDFNPDILNIIYENASRA 415 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 L + RE V RKT ++ LPGKLADC+ TELFIVEGDSA GSAKQ R+R Sbjct: 416 QAAALAAKAAREVVRRKTLLQSTVLPGKLADCASRDLTETELFIVEGDSAAGSAKQGRDR 475 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTR-SQYREEDLRYEKVIIMTD 543 QA+LPLRGKILN+ A E+I N ++ L+ A G + ++ E LRY K++IMTD Sbjct: 476 RTQAILPLRGKILNIERAAPERIYQNSELQGLISACGLGIKGAELEEASLRYGKIVIMTD 535 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG----TKSVYAHDEEHKQK 599 ADVDGAHI LLLTFF++ +L+E+ +L++ PPL++I G K Y +E K Sbjct: 536 ADVDGAHIRVLLLTFFFRYQRELVEKGYLYIAQPPLYKIVTGTGRARKEKYTFSDEEKDA 595 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 L E G + I RFKGLGEM+ QL ET MD + RTLL+V +N ++ Sbjct: 596 YLREDLSEGN--VMIQRFKGLGEMMPKQLWETTMDPDGRTLLQVSVND----CALADQTL 649 Query: 660 NKLMGTKADERFKFIQERASFID--DVG 685 + LMG R FI E A + D+ Sbjct: 650 DILMGDAVAPRRNFISEHAESLKLGDLD 677 >gi|121998014|ref|YP_001002801.1| DNA gyrase subunit B [Halorhodospira halophila SL1] gi|121589419|gb|ABM61999.1| DNA gyrase subunit B [Halorhodospira halophila SL1] Length = 807 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 221/578 (38%), Positives = 345/578 (59%), Gaps = 19/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + YD+ SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 TTEITPQYDSESIQVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+L + +TV DNGRGIPV+ H + ++I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 EITVTLHADHSVTVTDNGRGIPVDIHAE-EGVPAAQVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+ L + + R+ + Q+++ G P++ L+ + + GTRITF+P I Sbjct: 121 GVGVSVVNALSERLRLVIEREGKVHVQEYADGAPVTSLKVVGET-EQTGTRITFKPSEAI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + ++ L K + ++L+ V+ ++ E + F + GG++ +++ Sbjct: 180 FTEV-QYNYDILAKRFRELSFLNPGVRVVLKDERTEKE-------DVFEYTGGIRAFVEH 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ + +F + G V+ A+ W + I + N I +GGTH +G Sbjct: 232 LNRNKTPLHPTVFYVTAWRDGV---GVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E + + +D+ ++SV +P+F+ QTK KLVS + Sbjct: 289 RGALTRTVNGYLEAEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+ L + +L ++P EA + E VI+ S R RK R RK A+ LPG Sbjct: 349 KGIVESLLSESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRRKDALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQERDPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R + + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ Sbjct: 469 EVGTLITALGCGIGRDDFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL++I +G + Y DE + L E G Sbjct: 529 NVYIAQPPLYKIKRGKQEHYVKDERELTEYLLELALDG 566 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E + K I R+KGLGEM QL ET M+ R LLRV I+ + Sbjct: 722 LREAVEWLMEEAKRGQTIQRYKGLGEMNPDQLWETTMNPETRRLLRVTIDDAV----AAD 777 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+ A + ++ Sbjct: 778 EIFTTLMGDHVEPRRDFIERNALAVSNLD 806 >gi|163733266|ref|ZP_02140710.1| DNA gyrase subunit B [Roseobacter litoralis Och 149] gi|161393801|gb|EDQ18126.1| DNA gyrase subunit B [Roseobacter litoralis Och 149] Length = 804 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 229/580 (39%), Positives = 338/580 (58%), Gaps = 17/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A + Y A+SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SENEQAPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADAVTVKIHADSSISVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R+ +F G + L+ ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMAST 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ E ++ GG+K ++ Sbjct: 180 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSE-----LFYEGGVKEFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + ++S + E EK VE A+ W + E + N I +GGTH + Sbjct: 234 KYLDRSKSSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 290 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 291 GFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP EA ++ +IE + R RK R+ RKTA+ L Sbjct: 351 EVRPAVEGLVNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 411 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 470 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M LIE Sbjct: 471 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIE 530 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 Q HL++ PPL+++++G VY DE ++ L + G Sbjct: 531 QGHLYIAQPPLYKVSRGKSEVYLKDEAAMEEYLVQQGIDG 570 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V+++ + + D Sbjct: 721 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDD----MAEADDL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803 >gi|254486166|ref|ZP_05099371.1| DNA gyrase, B subunit [Roseobacter sp. GAI101] gi|214043035|gb|EEB83673.1| DNA gyrase, B subunit [Roseobacter sp. GAI101] Length = 804 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 224/578 (38%), Positives = 336/578 (58%), Gaps = 17/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 ++ + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 4 DKQIPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 AVNVTIHEDNSVSVSDNGRGIPVGIH-QGEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R+ +F G L ++ GT + F Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTEHLTVVGPT-DRTGTEVRFMASTST 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L K + A+L+ V+ + ++ P + E ++ GG+K +++ Sbjct: 182 FSNL-EYSFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRSELFYEGGVKEFVKY 235 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +++ + E EK VE A+ W + E + N I +GGTH +G Sbjct: 236 LDRSKTSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 292 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K ++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 293 RGALTRTINNYAQSSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE + + + +NP EA ++ +IE + R RK R+ RKTA+ L G Sbjct: 353 RPAVEGLVSEKLAEWFEENPTEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAG 412 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ +Q Sbjct: 413 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 472 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M LIE Sbjct: 473 EIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENG 532 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 HL++ PPL+++++G VY D+ + L + G Sbjct: 533 HLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIQQGIDG 570 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + + R+KGLGEM QL ET +D + RTLL+V + + + D Sbjct: 721 DLLDAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MAEADDL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 777 FTKLMGDVVEPRREFIQQNALNVENLD 803 >gi|259417608|ref|ZP_05741527.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B] gi|259346514|gb|EEW58328.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B] Length = 805 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SENEQAPTEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V++ + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADRVTVTIHADSSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG + L ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ + ++ + E ++ GG+ ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIVVTDER-----PAERLESELFYEGGVNEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ + K EK +E A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKTPVMDAPIYIKGEKDDI---GIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP A +++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLMGEKLAEWFEENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ ++ L G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMEEYLINQGVDG 571 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 722 DLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MIEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|34496568|ref|NP_900783.1| DNA topoisomerase IV subunit B [Chromobacterium violaceum ATCC 12472] gi|34102422|gb|AAQ58788.1| topoisomerase IV subunit B [Chromobacterium violaceum ATCC 12472] Length = 655 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 245/663 (36%), Positives = 363/663 (54%), Gaps = 36/663 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD SS+R+L+GLEPV+ RPGMY TD H+ EVIDNA DE + G+A I V++ Sbjct: 4 QQYDESSVRVLKGLEPVKERPGMYTRTTDPT---HICQEVIDNAADEALGGFARKIAVTV 60 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLHGVG 158 +G L+V D+GRGIPV HP+ +E++ T LHAGGKF+ Y SGGLHGVG Sbjct: 61 HQDGSLSVEDDGRGIPVGLHPQ-EGVPVVELVYTRLHAGGKFNKKDGGAYAFSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR-GTRITFRPDPKIFG 217 +SV NALS L V V R+ + FS G + PL + + GTR+ PD K F Sbjct: 120 VSVTNALSTRLEVEVKREGGVHRLVFSGGDVIEPLARVGDCGPRTSGTRVRVWPDGKYFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + L ++ ++KA L V + EK E + + +P GLK+YL Sbjct: 180 S-PRYSMQELERLLRAKAVLLPGVAVTLT-----VEKPSGDEVKAWQYPDGLKSYLAELC 233 Query: 278 ENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 ++ E + G ++ +WA+AW E+ SY N I T GGTHE+G Sbjct: 234 NGDEPVAPLFAGEAYIGDDHEQFAKGEGAQWAMAWFEDGASGESYVNLIPTPVGGTHEAG 293 Query: 334 LRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR + +K + + R + ++++D+ +LS + +P+F GQTK KL S DA Sbjct: 294 LRAGVYDAVKSFIDHHNLLPRGVKLMAEDVWSRVRFVLSARVLDPQFQGQTKDKLTSRDA 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + + RDP + +L Q+ K+ E I +++ RL+ K+ E + + + L PGK Sbjct: 354 LKLISGLARDPVELWLNQHVEAGKKIAELAIRQAQSRLKSVKKVEKKKGSGVAVL--PGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC ELF+VEGDSAGGSAK AR++ QA+LPLRGK+LN +++ +N + Sbjct: 412 LTDCESEDIERNELFLVEGDSAGGSAKLARDKEYQAILPLRGKVLNSWETDRDQLFSNAE 471 Query: 513 IMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I D+ A+G + DL RY K+ I++DADVDG+HI LLLT F++ L+E Sbjct: 472 IHDIAVAIGVDPHGPNDDPDLSGQRYGKIAILSDADVDGSHIQVLLLTLFFRHFPRLVEN 531 Query: 570 KHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620 ++++ PPLFR+ QG + +YA DE IL+ + G + ISRFKGL Sbjct: 532 GNIYIAQPPLFRVDVPGQGKTRPPRKLYALDEGEMSAILDRLRSEGVRENAWSISRFKGL 591 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679 GEM QLK+T M+ + R L+RV++ + L++T D LMG +A R +++ + + Sbjct: 592 GEMNPEQLKDTTMNPDTRRLVRVQVRPGM--LQETLDMFVMLMGKGEASSRRGWMEAKGN 649 Query: 680 FID 682 ++ Sbjct: 650 EVE 652 >gi|115352447|ref|YP_774286.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD] gi|115282435|gb|ABI87952.1| DNA topoisomerase IV subunit B [Burkholderia ambifaria AMMD] Length = 660 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 245/676 (36%), Positives = 362/676 (53%), Gaps = 47/676 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQIIVTLHTDQSVSVEDDGRGIPFGMHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + R K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFADGDVVKPLATQGAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE---------WAIAWCEENP-EITSYC 319 + YL ++ L+ + E+ R T E W +AW EE SY Sbjct: 229 RGYLLDEMNGSELLIP---LFEGERFADARSTDETFAEGEGASWVVAWSEEGSLVRESYV 285 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPE 378 N I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+ Sbjct: 286 NLIPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQ 345 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438 F GQ K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E Sbjct: 346 FQGQIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEK 405 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 + + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 406 RKSSGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLN 463 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLL 555 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LL Sbjct: 464 TWETERDRLFANNEVHDISVAIGVDPHSPDETVDLSNLRYGKICILSDADVDGSHIQVLL 523 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG- 608 LT F++ LIE+ H+ + PPLFR+ +G K +YA DE + L++ +K G Sbjct: 524 LTLFFKHFPQLIERGHVHVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGV 583 Query: 609 -KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-K 666 + + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG + Sbjct: 584 RETQWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGE 641 Query: 667 ADERFKFIQERASFID 682 A R +++E+ + ++ Sbjct: 642 AAARRGWLEEKGNDVE 657 >gi|260553769|ref|ZP_05826039.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] gi|260405073|gb|EEW98573.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] Length = 822 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 227/581 (39%), Positives = 342/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+ + R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 IVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + ++LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFNLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|167585848|ref|ZP_02378236.1| DNA topoisomerase IV subunit B [Burkholderia ubonensis Bu] Length = 660 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 241/673 (35%), Positives = 359/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R I F+ G + PL + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWRDGKIAELGFAEGDVVKPLSTQAAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQAWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSRSGDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDGVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ ++F+ PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 FFKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRDT 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYESTVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNEVE 657 >gi|134296546|ref|YP_001120281.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4] gi|134139703|gb|ABO55446.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4] Length = 660 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 242/673 (35%), Positives = 360/673 (53%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + S Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPSAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGMHPE-ERVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R+ I S F+ G + PL + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKIASLGFADGDVVKPLATQAAGRGEKKSGTRVQV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P+PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPNPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVNEK-------TGERQAWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ T+ W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADARSTDDTFAEGEGASWVVAWSEEGSLVRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFSRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETEDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G S +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHSPDDTVDLSNLRYGKICILSDADVDGSHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ H+++ PPLFR+ +G K +YA DE + L++ +K G Sbjct: 527 FFKHFPQLIERGHVYVARPPLFRVDAPARGKKPAQKLYALDEGELEATLDKLRKDGVRDT 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V++ + T + LMG +A Sbjct: 587 QWSISRFKGLGEMSAEQLWDTTMNPDTRRLMPVKL--GELDYEATVARMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRGWLEEKGNDVE 657 >gi|226942174|ref|YP_002797247.1| DNA gyrase subunit B [Azotobacter vinelandii DJ] gi|226717101|gb|ACO76272.1| DNA gyrase protein, subunit B [Azotobacter vinelandii DJ] Length = 806 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 234/570 (41%), Positives = 347/570 (60%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY N I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SITIHTDESITVRDNGRGIPVDLH-KEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +T+ R ++ Q + G+P +PL + GT++ F+P + F Sbjct: 121 GVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGTQVHFKPSAETFH 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGLK ++ Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLKAFVDYLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335 N++ +S + E+ G VE A+ W + N I + N I +GGTH +G R Sbjct: 232 TNKNAVSQVFHFNVQREEDGV---GVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRNLNAYIEQEGLAKKHKVTTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++ + Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSAE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y E LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIEKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D+E ++ + Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L + I R+KGLGEM QL ET MD + R +L+V I + T Sbjct: 721 FKETLAWLMAETAKRHSIQRYKGLGEMNPEQLWETTMDPSVRRMLKVTIEDAI----ATD 776 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R +FI+ A + ++ Sbjct: 777 QIFNTLMGDAVEPRREFIENNALAVANLD 805 >gi|241662513|ref|YP_002980873.1| DNA topoisomerase IV subunit B [Ralstonia pickettii 12D] gi|240864540|gb|ACS62201.1| DNA topoisomerase (ATP-hydrolyzing) [Ralstonia pickettii 12D] Length = 661 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 254/673 (37%), Positives = 361/673 (53%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSI++L+GLEPV+ RPGMY T H+ EVIDN+ DE + GY LI Sbjct: 2 SKTSQYSESSIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYGKLIA 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D+ RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDDARGIPVGIHPE-EGVPVVEIVYTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + P K E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSKRLEVTVWRDGNVSTLAFSGGDVIEPLTTRKAERGEKKSGTRVRAWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVTLTLEK-------TGETLEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322 L S I + E E W +AW EE SY N I Sbjct: 230 VESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVDHGKKLAELVIKQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDTVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI++ ++ + PPL+R+ +G K +YA D+ + I ++ +K G +G Sbjct: 528 FFKHFPQLIDRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGVKEG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V + + T + +N LMG +A Sbjct: 588 AWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVALGELGQD--QTINMMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|224827188|ref|ZP_03700283.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002] gi|224600581|gb|EEG06769.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002] Length = 796 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 223/571 (39%), Positives = 341/571 (59%), Gaps = 19/571 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A SI++L+GL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+A+ I+ Sbjct: 2 SEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHADTIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD+++Y+ISGGLHGVG Sbjct: 62 VTINPDNSISVEDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDSNSYKISGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG ++PL RGT +TF + FG Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEAVAPLTVTGHST-YRGTEVTFHASEETFGK 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V + ++E F F GG+ +++ Sbjct: 180 I-EFHFDILAKRIRELSFLNQGVAITLIDKR-------TGKEENFAFSGGVAGFVEYMNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ + ++F EK+G TVE A+ W + + + N I +GG+H + LR Sbjct: 232 NKTALHPKVFHAIGEKEG---MTVEVAMQWNDSYQESVQCFTNNIPQRDGGSHLTALRQV 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 MTRTLNGYIEQSDTAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454 V + D +L++NP +A ++ +++ + R RK RE+ R+ + L LPGKLA Sbjct: 349 VNEVISDALKSFLLENPNDAKIIVGKIVDAARAREAARKAREITRRKGIMDGLGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 DCQEKDPAMSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLASQEVA 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC + +Y + LRY ++IIMTDADVDGAHI +LLLTFFY++ +L+E+ H++ Sbjct: 469 TLITALGCGIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQTPELVERGHIY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 + PPL++ G + Y D+ + L + Sbjct: 529 IAQPPLYKAKHGKQERYLKDDYELDQYLLQL 559 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 586 TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEI 645 + + L+ + + I R+KGLGEM QL ET MD R LL+V+I Sbjct: 700 KRGETVKPVADFGEALDWLLAEVRKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVKI 759 Query: 646 NKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + D LMG + R FI+ A ++ Sbjct: 760 EDVMG----ADDVFTTLMGDNVEPRRAFIEGNALIARNID 795 >gi|28569045|gb|AAO47226.1|AF205853_2 DNA gyrase subunit B [Streptomyces rishiriensis] Length = 702 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 227/702 (32%), Positives = 334/702 (47%), Gaps = 53/702 (7%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 P A + +Y A + +L+GLE VR RPGMYIG +D + L H E+IDN++ Sbjct: 2 STFPAPAAGSRPQDGSDYTARHLMVLDGLEAVRKRPGMYIGSSDSRGLMHCLWEIIDNSV 61 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG + IEV L +G + V DNGRGIPV+ P+ S +E+ T LHAGGKF Sbjct: 62 DEALAGACDHIEVILHDDGSVEVTDNGRGIPVDTEPR-TGLSGVELAYTKLHAGGKFGGG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------- 199 +Y G VG SVVNALS L + V R + F RG P + Sbjct: 121 SYGSGGLHG-VGASVVNALSARLDIEVDRHGRTHAISFRRGAPGTYSAPGPDAPFTRAQG 179 Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 +++ GTR+ + D +IF A L + + A+L + + + Sbjct: 180 LHRTARIPKSRTGTRVRYWADRQIFLKDAKLSLENLHQRARQTAFLVPGLTIVVRDEYGL 239 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295 E E E F F GG+ + + ++ + TG+ + Sbjct: 240 GEGGSKGE-ESFRFDGGISEFCEYLAADKPVCDVLRLTGQGTFKETVPVLDEHGQMTPTE 298 Query: 296 GTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRA 354 T V+ A+ W S+ N I T +GGTH +G A+ + + + + R Sbjct: 299 VTRELGVDVALRWGTGYDTTLRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRAKKLLRV 358 Query: 355 ISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 DD + +++V + EP+F GQTK L + A+R V + +L Sbjct: 359 AEDDIVKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNTVISRELKAFLTSTK 418 Query: 413 IEATKLLEWVIER-----SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELF 467 +A V+E+ R+ + RKTA+ LP KLADC + +ELF Sbjct: 419 RDAAAQARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVERSELF 478 Query: 468 IVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQ 527 IVEGDSA G+AK ARN QA+LP+RGKILNV + + N + ++Q +G + Sbjct: 479 IVEGDSALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAGSGRT 538 Query: 528 YREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI----- 582 + + RY K+I+MTDADVDG+HI +LLLT F++ M ++E +F PPL RI Sbjct: 539 FDIDAARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVESGRVFAAVPPLHRIELVQP 598 Query: 583 TQGTKSV-YAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 +G Y + + + L EF+ G + K I R+KGLGEM A QL ET MD RTL Sbjct: 599 KKGQDRYVYTYSDRELRDRLMEFQSKGVRYKDSIQRYKGLGEMDADQLAETTMDPRHRTL 658 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R+ ++ L+ + + LMG R +FI A+ +D Sbjct: 659 RRINLSD----LEAAEQVFDLLMGNDVAPRKEFISSSAATLD 696 >gi|88812692|ref|ZP_01127939.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231] gi|88790108|gb|EAR21228.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231] Length = 630 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 250/629 (39%), Positives = 352/629 (55%), Gaps = 27/629 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +Y+A+SI +L GL+PVR RPGMY TD +HL EVIDN +DE +AG+A+ IEV Sbjct: 2 TKHYNAASIEVLTGLDPVRRRPGMY---TDTTRPNHLAREVIDNGVDEALAGFADRIEVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G L+V DNGRG+PV+ HP+ +E+IL+ LHAGGKF +Y+ SGGLHGVG+S Sbjct: 59 LHYDGSLSVSDNGRGMPVDLHPE-EGLPGVELILSRLHAGGKFSQHSYQFSGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTRITFRPDPKIFGDK 219 VVNALS L VT+ R + F G S LE + + GT + F PD + D Sbjct: 118 VVNALSRRLEVTIRRDGQQWRMHFVEGEKCSELELIGALNKVETGTTLRFWPDA-RYFDS 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F RL ++KA L ++ + + E +Y+ GL YL L Sbjct: 177 PRFSVPRLQYALRAKAVLCPGLRVRFYDEAAQEE-------FVWYYEDGLADYLCDTLGP 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVA 337 + F G+ + T EWA+ W + E SY N I T +GGTH +GLR Sbjct: 230 VERLPEPPFLGQMSA---AQETAEWALVWLPDAGEAVQESYVNLIPTPQGGTHVNGLRAG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 LT I+++ E R + I DD+ ILSV + P+F GQTK +L S + V Sbjct: 287 LTEAIREFCEFRNLLPRGVRIAPDDVWERLSFILSVKLENPQFTGQTKERLSSRECAAFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ A +++ +I+ ++ RLR ++V RK LPGKLADC Sbjct: 347 SGVVKDTFSLWLNQHIAPAQQIVALIIQNAQRRLR--TSKKVARKRVTSGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQAR+R QAV+PLRGKILN ++ +Q++ D+ Sbjct: 405 TSQDLRQTELFLVEGDSAGGSAKQARSREYQAVMPLRGKILNTWEVDPAEVMGSQEVHDI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S LRY K+ I+ DAD DGAHIA+LL F + L+ Q H+++ Sbjct: 465 AVALGVEPGSADL-SRLRYGKICILADADPDGAHIATLLCALFLRHFPALVRQGHVYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G ++ YA D E ++ +L+ ++ K K +I+RFKGLGEM QL+ET M A Sbjct: 524 PPLYRIDVGKQTYYALDGEERRGVLDRVAAENNKAKPQITRFKGLGEMNPKQLRETTMAA 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMG 664 R L+R+ ++ S + + L+G Sbjct: 584 ETRRLVRLTVD----SEDAAEQLLGMLLG 608 >gi|52426304|ref|YP_089441.1| DNA gyrase subunit B [Mannheimia succiniciproducens MBEL55E] gi|52308356|gb|AAU38856.1| GyrB protein [Mannheimia succiniciproducens MBEL55E] Length = 811 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 232/575 (40%), Positives = 355/575 (61%), Gaps = 24/575 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ +NY ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY Sbjct: 2 SENTQENYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCK 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V D+GRGIPV+ HP+ S ++I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DIIVTIHEDNSVSVQDDGRGIPVDIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD+L +T+ RQ ++ Q +S G P L+ + +K GT + F P P I Sbjct: 121 GVGVSVVNALSDKLQLTIRRQGHVYEQFYSLGEPNEQLKNIGET-DKTGTTVRFWPSPTI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F+ L K + ++L+ V +++ A + F++ GG++ +++ Sbjct: 180 FSNTV-FEYEILKKRLRELSFLNSGVSIKLFDERDGAN-------DHFHYEGGIQAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +N++ I + F EK+G VE A+ W + I + N I +GGTH +G Sbjct: 232 LNQNKTTIHPKPFYFSIEKEGI---GVEVALQWNDGYNENIYCFTNNIPQRDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQNKRA-------ISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR + Y + + + DD V ++SV + +P+F+ QTK KL Sbjct: 289 RGALTRTLNSYMDKAGLNKKGKNDKDKVETSGDDAREGLVAVISVKVPDPKFSSQTKDKL 348 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446 VS + + VE+A+ + YL +NP +A + +++ + R RK R RK A+ Sbjct: 349 VSSEVKGAVESAMNERLQEYLEENPNDAKIIATKIVDAARAREAARKAREMTRRKGALDI 408 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K Sbjct: 409 AGLPGKLADCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 468 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q++ L+ ALGC R +Y + +RY KVIIMTDADVDG+HI +LLLTFFY++M + Sbjct: 469 MLSSQEVGTLITALGCGIGRDEYNPDKMRYHKVIIMTDADVDGSHIRTLLLTFFYRQMPE 528 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKI 600 +IE+ ++++ PPL+++ +G + Y DE + Sbjct: 529 IIERGYVYIAQPPLYKVKKGKQEQYIKDEPAMTQY 563 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +T+G + ++ +E F K + + + R+KGLGEM QL ET MD + R +L Sbjct: 715 VTRGNGKLEISS---FEQAIEWFVKESRKGLTVQRYKGLGEMNPEQLWETTMDPDARHML 771 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A ++ Sbjct: 772 KVTIKDAV----AADQLFTTLMGDEVEPRRDFIESNALRA-NLD 810 >gi|146337179|ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278] gi|146189985|emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278] Length = 812 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 241/579 (41%), Positives = 345/579 (59%), Gaps = 13/579 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + + A + ++ Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQTIADNEPATANEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AGYA +EV L+ + +TV D+GRGIPV H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGYATRVEVVLNADNSVTVRDDGRGIPVGIH-KDEGVSAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + + R++ +F+ G ++PL + + KRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLELRIWREDKEHLIEFAHGDAVAPLRVVGESKGKRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF + F +D A L + A+L+ V S + EK EE + Sbjct: 181 TEVTFLASTETFK-MVEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKR-----EEMF 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG++ +++ N+ I ++E G TVE A+ W + E + N I Sbjct: 235 YSGGVEEFVKYLDRNKKAIVPNPIMVRSEANGI---TVEAALWWNDSYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YAE K I++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLVS + + VEN + + + ++P EA ++ VI+ + R RK RE+ RK Sbjct: 352 KDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNP 411 Query: 444 IR-KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 412 LNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERV 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ +++QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFFY++ Sbjct: 472 RPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQ 531 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 M +I++ HL++ PPL+++T+G Y DE + L Sbjct: 532 MRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYL 570 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ I + R+KGLGEM QL ET +D RTLL+V++ + + D Sbjct: 730 DLFEAVTDSGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKV----KEVDEADDI 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 786 FTKLMGDVVEPRREFIQDNSLSA-NVD 811 >gi|148251634|ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] gi|146403807|gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] Length = 812 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 239/579 (41%), Positives = 349/579 (60%), Gaps = 13/579 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + + A + +++Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQTIADNEPATANDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AGYA+ +EV L+ + +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGYASRVEVVLNADNSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + + R++ +F+ G ++PL+ + + +RG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF + F +D A L + A+L+ V S + EK EE + Sbjct: 181 TEVTFLASTETFK-MVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKR-----EEMF 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG++ +++ N+ I ++E G TVE A+ W + E + N I Sbjct: 235 YSGGVEEFVRYLDRNKKAIVPSPIMVRSEVNGI---TVEAALWWNDSYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YA+ K I++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYADAHAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLVS + + VEN + + + ++P EA ++ VI+ + R RK RE+ RK Sbjct: 352 KDKLVSSEVRPVVENVINEALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNP 411 Query: 444 IR-KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 412 LNNIASLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERV 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ +++QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFFY++ Sbjct: 472 RPDKMLSSEQIGTLITALGTGISDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQ 531 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 M +I++ HL++ PPL+++T+G Y DE + L Sbjct: 532 MRQIIDRGHLYIAQPPLYKVTRGKSEQYLKDERALEDYL 570 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ I + R+KGLGEM QL ET +D RTLL+V++ + + D Sbjct: 730 DLFEAVTDAGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKV----KEVDEADDI 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 786 FTKLMGDVVEPRREFIQDNSLSA-NVD 811 >gi|329118645|ref|ZP_08247349.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria bacilliformis ATCC BAA-1200] gi|327465380|gb|EGF11661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria bacilliformis ATCC BAA-1200] Length = 796 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 226/571 (39%), Positives = 333/571 (58%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 AEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KINVTIHADNSVSVSDNGRGMPTGIHPK-EGISAAEVIMTILHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFIRGASEKPLAVVGD-SDKKGTTVRFLASEET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINRALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE K + L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDEFEKDQWL 559 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + LE + + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDISSFEDALEILLQTAQKGMAIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|325265831|ref|ZP_08132517.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans ATCC 33394] gi|324982469|gb|EGC18095.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans ATCC 33394] Length = 661 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 246/671 (36%), Positives = 353/671 (52%), Gaps = 36/671 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y SSI++L+GL+PV+ RPGMY T + H+ EVIDNA DE + G+A I+ Sbjct: 2 KPAAAYSESSIQVLKGLDPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATRID 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YEISGGL 154 V + +G L+V DNGRGIP HP +E++ T LHAGGKFD + Y SGGL Sbjct: 59 VEIHADGSLSVRDNGRGIPTGLHP-VEQIPVVELVFTQLHAGGKFDKKSGGGAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDP 213 HGVG+SV NALS L VTV R + F+ G + PL + K GT + P+P Sbjct: 118 HGVGVSVTNALSSRLEVTVKRDGQVSRIVFADGYVVEPLAQIGKCAVRDTGTEVRVYPNP 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L ++ ++KA L V + + + + P + +++P GL++YL Sbjct: 178 KYFES-PTYSIPELERLLRAKAVLLQGVTVSLT--RHVKGQPAHPVTQTWHYPQGLQSYL 234 Query: 274 QTKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGG 328 LEN E + + +A+ W EE SY N I T GG Sbjct: 235 ADLLENAQEAVPVFAAENYISGSHDDFRAGEGAAFALTWLEEGSCANESYVNLIPTPLGG 294 Query: 329 THESGLRVALTRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 THE+GL+ A + + R + I SDD+ A +LS + +P+F GQTK KL Sbjct: 295 THEAGLKQAAFNAVNNFIAHHNLLPRGVKINSDDVFSRAAFVLSARVLDPQFQGQTKDKL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 + DA + V DP + +L QN K+ + I++++ R+R +++ +K Sbjct: 355 TNRDALKLVSAVCSDPLELWLNQNTEIGKKIADLAIKQAQARMRSV--KKIEKKKGSGVA 412 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC ELF+VEGDSAGGSAK AR++S QA+LPLRGK+LN +++ Sbjct: 413 VLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKSYQAILPLRGKVLNSFEVHRDQL 472 Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I D+ A+G + D LRY K+ I++DADVDG+HI LLLT FY+ Sbjct: 473 FGNAEIHDISVAIGVDPHGANDDVDLGGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFP 532 Query: 565 DLIEQKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 L+ H+++ PPLFR+ QG + YA DE ILE K+ + IS Sbjct: 533 KLVANGHIYVAQPPLFRVDVNAQGKSKPARKFYALDEAELNAILERLKQENVRETAYSIS 592 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM QLK+T + + R LL+V I + + DT++ KLMG +A R ++ Sbjct: 593 RFKGLGEMNPDQLKDTTLYPDTRRLLQVRIPEHM--AGDTENVFLKLMGKGEAAARRAWM 650 Query: 675 QERASFIDDVG 685 + D + Sbjct: 651 EAEGDKAD-LD 660 >gi|295675917|ref|YP_003604441.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002] gi|295435760|gb|ADG14930.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1002] Length = 661 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 242/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVDDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK--EKVRNKRGTRITF 209 GGLHGVG+SV NALS L VTV R + F+ G PL+ + K K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAELSFAHGDVAKPLQVRAATKADKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 DPK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIF-------TGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL + L+ + +E+ W +AW EE P SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAESSRSSEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G + + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHNPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + K + LMG +A Sbjct: 587 NQWSISRFKGLGEMSAEQLWDTTMNPDTRRLQPVALGKLDYDATVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|300704691|ref|YP_003746294.1| DNA topoisomerase iv subunit B [Ralstonia solanacearum CFBP2957] gi|299072355|emb|CBJ43693.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CFBP2957] Length = 661 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 252/673 (37%), Positives = 356/673 (52%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ LI Sbjct: 2 SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGFGKLIA 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + K E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGNVSTLTFSGGDVIEQLTTRKAERGEKKNGTRVRVWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVALTLEKS-------GETVEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPE-ITSYCNTI 322 L S I + E E W +AW EE SY N I Sbjct: 230 IESLAQGSGAEPVIPLFEGEHFADPDKPGEEGFAFGEGASWVVAWTEEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++ +D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALLPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI +++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKKLAELVIRQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHGKG-- 610 F++ LIE+ ++ + PPL+R+ +G K +YA D+ + I ++ +K G Sbjct: 528 FFKHFPQLIERGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKED 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V I + + T + +N LMG +A Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVFIGEPG--PEQTVNMMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|299768254|ref|YP_003730280.1| DNA gyrase, B subunit [Acinetobacter sp. DR1] gi|298698342|gb|ADI88907.1| DNA gyrase, B subunit [Acinetobacter sp. DR1] Length = 822 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 344/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+ ++R + Q++ G P PL + +K GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSRKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W E + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTDNGI---VVEVALQWNESYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENIIKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + L+E +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFSLLEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|91782490|ref|YP_557696.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400] gi|91686444|gb|ABE29644.1| DNA topoisomerase IV subunit B [Burkholderia xenovorans LB400] Length = 661 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 238/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHVDHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R+ + F+ G LE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + YL + L+ + E+ W +AW EE + SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|296315053|ref|ZP_06864994.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768] gi|296838081|gb|EFH22019.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768] Length = 796 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 343/601 (57%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDVDSFEAALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|325129012|gb|EGC51862.1| DNA gyrase, B subunit [Neisseria meningitidis N1568] Length = 796 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 225/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE K + L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++ L+ ++ + + I R+KGLGEM QL ET MD + R LL+V I + Sbjct: 706 YPVGSFEEALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAI-- 763 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + + R FI+ A ++ Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|296159125|ref|ZP_06841952.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1] gi|295890686|gb|EFG70477.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. Ch1-1] Length = 661 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 238/674 (35%), Positives = 357/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R+ + F+ G LE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWREGKVAELSFANGDVARELEVRPATKGDKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + YL + L+ + E+ W +AW EE + SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYVENSRASEETFAEGEGASWVVAWSEEGTLMRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|326332699|ref|ZP_08198962.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1] gi|325949527|gb|EGD41604.1| DNA gyrase subunit B [Nocardioidaceae bacterium Broad-1] Length = 730 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 233/716 (32%), Positives = 346/716 (48%), Gaps = 58/716 (8%) Query: 17 QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHH 76 + + + S + + + Y+A+ + +LEGLE VR RPGMYIG TD + L H Sbjct: 23 RATPRRNPPSTIAATQYSQEPIISDNTYNAAHLLVLEGLEAVRKRPGMYIGSTDTRGLMH 82 Query: 77 LFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTT 136 E+IDN +DE +AG A +EV++ +G + V D+GRGIP + P+ +E++ T Sbjct: 83 CLWEIIDNGVDEALAGVAGHVEVTMHPDGSVEVYDDGRGIPTDKEPR-TGLPGVEVVATK 141 Query: 137 LHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGI-------- 188 LHAGGKF +Y +GGLHGVG+SVVNALS + + V R F RG+ Sbjct: 142 LHAGGKFGGGSYNATGGLHGVGLSVVNALSSRMDIDVDRSPAQQGMSFRRGVPGVFDGDG 201 Query: 189 ------PLSPLEKKEK--VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 P S L +K K + K GTR+ F PD +IF A F+ LL + +++ Sbjct: 202 PTAGFTPQSGLSRKGKRVAKGKTGTRVRFWPDRQIFTKDARFELEGLLGRARQTSFIVPG 261 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGK--------- 291 ++ P +E+F GG+ ++ ++ + G Sbjct: 262 LELVIRDLSGAD-----PVEEKFRHDGGIAEFVDFLAKDEPVSGVLRLQGSDTFTETVPM 316 Query: 292 -------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIK 343 T + V+ A+ W EI S+ N I T +GGTH SG ALT+ Sbjct: 317 LDDAGHMTPQDVERELGVDIAVRWGSGYDTEIRSFVNVIATPKGGTHVSGFENALTKTFN 376 Query: 344 KYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 + + +D++ +++V + EP+F GQTK L + A+ V + Sbjct: 377 DAMRAAKVLKVNDKDIVKEDVLEGLTAVVTVRLAEPQFEGQTKEILGTPAARSVVRKVVA 436 Query: 402 DPFDHYLVQNPIEATKLLEWVIE----RSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456 +L ++ + + V+E S+ RL R+Q+ RK A+ LP KLADC Sbjct: 437 AEMKTFLTESRGAQKQQAKLVMEKVYAASKTRLSLRQQKENQRRKNALESSALPSKLADC 496 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 ELFIVEGDSA G+AK ARN QA+LP+RGKILNV A + N + + Sbjct: 497 RTTDD-RAELFIVEGDSALGTAKVARNSEFQALLPIRGKILNVQKASVGDMLKNAECSSI 555 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 +Q +G T + + RY K+I M DAD DGAHI +LL T F++ M +LI ++ Sbjct: 556 IQVVGTGTGRSFDLDAARYGKIIFMADADSDGAHIRTLLATLFFKYMPELIAAGKVYTAV 615 Query: 577 PPLFRI-----TQG-TKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLK 629 PPL RI +G K +Y + + Q+ L E KK K + R+KGLGEM A QL Sbjct: 616 PPLHRIEISNPKKGMEKYIYTYSDPELQRKLAELKKKNVSWKDPVQRYKGLGEMDADQLA 675 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET MD RTL R+ ++ + + LMG++ R +FI + + Sbjct: 676 ETTMDPRHRTLRRLTLDDADAAAA----VFDLLMGSEVAPRKEFIVAGGGQLSETD 727 >gi|9971917|gb|AAG10479.1|AF279106_41 predicted topoisomerase IV subunit B [uncultured marine gamma proteobacterium EBAC31A08] Length = 631 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 242/649 (37%), Positives = 367/649 (56%), Gaps = 26/649 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A ++YDA +I +L GL+PV+ RPGMY TD +HL EV+DN++DE ++GY + I+V Sbjct: 2 AKNSYDAQAIEVLSGLDPVKKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGYCSNIKV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S+ +GF+ V D+GRG+P++ HP+ S +E+IL LHAG KF Y SGGLHGVG+ Sbjct: 59 SVLKDGFIKVSDDGRGMPIDEHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGD 218 SVVNALSDEL V V R + + F+ G S L+ +V GT I F+P+P F Sbjct: 118 SVVNALSDELEVRVKRDSKEYQITFNNGDKSSELKPIGEVGLRNSGTSIKFKPNPTYFET 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +L + ++KA L + + +K+ +K +++YF GLK+YL E Sbjct: 178 I-EIQIKQLKHLLKAKAVLCPGLTIEFVNEKKTDDK------QKWYFEDGLKSYLIDSSE 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAW---CEENPEITSYCNTILTDEGGTHESGLR 335 L+ + K + +E+AI W +N +Y N I T +GG+H +G + Sbjct: 231 GADLVLLDSIVCS---KKSQAQELEFAINWSLRPPKNKLDETYVNLIPTAQGGSHLNGFK 287 Query: 336 VALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L +K++ E + + I +DD++ +A+ I+S ++ P+FAGQTK +L S D Sbjct: 288 AGLLDSLKEFCEYRNLLPKGLKINADDVLNNAIFIISSKLQNPQFAGQTKERLDSKDHMS 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 V + +D +L + E ++ E I ++ R + E + R LPGKL+ Sbjct: 348 FVSSTTKDILSIWLNTHTEEGERIAELAIMSAQTRAKVSNIVERKKT--FRGPALPGKLS 405 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC+ + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN S +I +Q+I Sbjct: 406 DCNSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESAEIIKSQEIK 465 Query: 515 DLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +L A+G + LRY K+ I+ DAD DG HIA+LL F + L+++ +++ Sbjct: 466 NLSTAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYI 524 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAM 633 PPL+RI G +YA D++ + +I+ EF KK GK K+ I RFKGLGEM QL+ET M Sbjct: 525 SMPPLYRIDSGKDVLYALDDKQRDEIVTEFKKKKGKPKVNIQRFKGLGEMNPPQLRETVM 584 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 D R L+++ I+ N+ ++K A R ++++++ S Sbjct: 585 DPATRQLVQLSISSSDNANSMMDLLLSK---KNAPARKEWLEKKGSLAK 630 >gi|327484923|gb|AEA79330.1| Topoisomerase IV subunit B [Vibrio cholerae LMA3894-4] Length = 602 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 234/622 (37%), Positives = 342/622 (54%), Gaps = 24/622 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MY TD +HL EVIDN++DE +AGY + I+V L + L V+D+GRG+PV+ HP+ Sbjct: 1 MY---TDTTRPNHLGQEVIDNSVDEALAGYTSKIQVILHADQSLEVIDDGRGMPVDIHPE 57 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E+IL LHAGGKF N Y+ SGGLHGVGISVVNALS + V V R ++ Sbjct: 58 -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIA 116 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G ++ L R GT + F PD K F F +RL+ ++KA L ++ Sbjct: 117 FEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLE 175 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 ++ E + + GLK YL ++ +L+ E FTG+ + T Sbjct: 176 IIFTDKVNNNE-------HRWLYEDGLKDYLAEGVKGYTLLPEEPFTGEFTAQTEA-ATW 227 Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361 SY N I T +GGTH +GLR L ++++ E R + + +D Sbjct: 228 AVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + +LS+ +++P+FAGQTK +L S + V ++D F +L + P A +L E Sbjct: 288 VFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347 Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I + R+R ++V RK LPGKL DC+ + TELF+VEGDSAGGSAKQA Sbjct: 348 CIANAHSRMR--ASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQA 405 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+R QAV+PLRGKILN ++++ +Q++ D+ ALG S E LRY KV I+ Sbjct: 406 RDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEA-LRYGKVCIL 464 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 DAD DG HIA+LL F + L++ H+++ PPL+RI G + YA D++ K+ +L Sbjct: 465 ADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVL 524 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 E + K K+ + RFKGLGEM QL+ET MD N R L+++ I+ + T + ++ Sbjct: 525 ERLSQK-KAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDD----AEATDEMMDM 579 Query: 662 LMGTK-ADERFKFIQERASFID 682 L+G K AD+R ++Q + Sbjct: 580 LLGKKRADDRRAWLQRNGDMAE 601 >gi|261364800|ref|ZP_05977683.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996] gi|288566827|gb|EFC88387.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996] Length = 796 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 229/596 (38%), Positives = 341/596 (57%), Gaps = 24/596 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 7 EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 67 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL+ +K+GT + F + FG+ Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V +++ + E F GG+ ++Q + Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 354 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL++ G + Y DE K + L + R + ++L +T Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L ++ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|86355681|ref|YP_467573.1| DNA gyrase subunit B [Rhizobium etli CFN 42] gi|86279783|gb|ABC88846.1| DNA gyrase subunit B protein [Rhizobium etli CFN 42] Length = 811 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 234/577 (40%), Positives = 343/577 (59%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+++ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + + R I F+ G+ +PL+ + GT ++F Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDSTGTEVSF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F FD L + A+L+ V+ + + K +EE + GGL Sbjct: 181 MPSSETFT-MTEFDYGTLEHRLRELAFLNSGVRILLADKRHSDIK-----QEEMRYDGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + ++ + + + + EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVSYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+ + K +++ +D +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VE+ + + + + ++P EA L+ V+E + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +LIE+ HL++ PPL+++ +G Y DE+ ++ L Sbjct: 532 ELIERGHLYIAQPPLYKVARGKSVQYLKDEKALEEYL 568 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V++ D Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQ+ A + ++ Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810 >gi|319639457|ref|ZP_07994207.1| DNA gyrase subunit B [Neisseria mucosa C102] gi|317399352|gb|EFV80023.1| DNA gyrase subunit B [Neisseria mucosa C102] Length = 796 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 237/645 (36%), Positives = 357/645 (55%), Gaps = 40/645 (6%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 7 EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 67 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL+ +K+GT + F + FG+ Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V + +++ + E F GG+ ++Q + Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQYMNRKK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 294 RTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 354 EVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 414 QEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473 Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 474 ITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI----EISRFKGLGE---MLASQ- 627 PPL++ G + Y DE K + L + I GE A Q Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGRTIE-----GEELANTAKQF 588 Query: 628 -LKETAMDANKRTLLRVEINK-------DLNSLKDTQDSINKLMG 664 L +T ++ R + + ++ DL++ + ++ +L G Sbjct: 589 LLAKTVIEQESRIIDELVLHAMLHASPVDLSTAESADRAVAELSG 633 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEAALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 796 >gi|269219419|ref|ZP_06163273.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str. F0332] gi|269211115|gb|EEZ77455.1| putative DNA gyrase subunit B [Actinomyces sp. oral taxon 848 str. F0332] Length = 735 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 246/719 (34%), Positives = 366/719 (50%), Gaps = 77/719 (10%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +++++Y A +++LEGLE VR RPGMYIG TD + L H E+IDNA+DE + G+A+ +E Sbjct: 13 TSNESYTARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALEGHADAVE 72 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V L +G + V DNGRG+PV+ P S +E++ T LHAGGKF +Y SGGLHGVG Sbjct: 73 VRLYADGSVEVRDNGRGVPVDEVP-GVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVG 131 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL---------------------EKKE 197 SVVNALS+ + V V R + +F RG P + Sbjct: 132 ASVVNALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVG 191 Query: 198 KV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-- 254 KV +NK GTR+ + DP+IF A F L++ + A+L + ++E A Sbjct: 192 KVAKNKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGEN 251 Query: 255 ----------------YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT------ 292 + P E F F GG ++ + ++ ++ TG+ Sbjct: 252 AAGENAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKV 311 Query: 293 -----------EKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 ++ V+ A+ W ++ S+ N I T GGTH+SG L + Sbjct: 312 PVLDAESGHLVSREVERAVAVDVALRWGKDYETRVESFVNIIRTPGGGTHQSGFEQGLMK 371 Query: 341 GIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 ++ E + + I DD++ +++V + EP+F GQTK L + + Sbjct: 372 VVRSLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGI 431 Query: 396 ----VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLP 450 VE L E ++LLE V+ R+ R +E++R+ A+ LP Sbjct: 432 VSGVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLP 491 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 KLADC TELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + I N Sbjct: 492 AKLADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKN 551 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +++ +++Q +G + + RY KVI+MTDADVDGAHI +LLLT F++ M L+++ Sbjct: 552 KEVSEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEG 611 Query: 571 HLFLISPPLFRI-----TQGTKS-VYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEM 623 ++ PPL RI G KS +Y + E+ L + ++ GK E I R+KGLGEM Sbjct: 612 RVYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEM 671 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 A QL ET MD ++RTL R+ + + +L + + LMG R +FI E A+ +D Sbjct: 672 DAHQLAETTMDPSRRTLRRIRMEDE-RALMEAETVFELLMGNDVAPRREFIVEGAAAVD 729 >gi|149912808|ref|ZP_01901342.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b] gi|149813214|gb|EDM73040.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b] Length = 805 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 228/569 (40%), Positives = 336/569 (59%), Gaps = 16/569 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + D Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ + Sbjct: 6 PSPDEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAV 65 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V DNGRGIPVE H + S E+I+T LHAGGKFD ++Y++SGGLHGV Sbjct: 66 NVTIHADSSISVSDNGRGIPVEIHEE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 124 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L + V R +F G + L ++GT + F + F Sbjct: 125 GVSVVNALSEWLELRVWRNGKEHYARFEGGDTVEHLRVVGDANGRKGTEVRFLASTETFS 184 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + L K + A+L+ V+ ++ P E ++ GG++ +++ Sbjct: 185 NL-EYSFDTLEKRLRELAFLNSGVRIILRDER-----PAEPLVTELHYDGGVQEFVKYLD 238 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +++ + +E + EK G VE A+ W + + + N I +GGTH +G R Sbjct: 239 RHKTSMIAEPISINGEKDGV---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRG 295 Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I+KYA+ + + DD +LSV + +P+F+ QTK KLVS + + Sbjct: 296 ALTRTIQKYAQESGIAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRP 355 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 VE + + + +NP EA +++ +IE + R RK R+ RKTA+ L GKL Sbjct: 356 AVEGLVYEKLTEWFEENPNEAKQIVGKIIEAAMAREAARKARDLTRRKTAMDVNYLAGKL 415 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 DCS+ TELF+VEGDSAGGSA+ R+RS QAVLPLRGKILNV A +++ +Q+I Sbjct: 416 KDCSEKDPSKTELFLVEGDSAGGSAQTGRDRSTQAVLPLRGKILNVERARFDRMLGSQEI 475 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE +L Sbjct: 476 GNLVVALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIENGYL 535 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G VY DE + L Sbjct: 536 YIAQPPLYKVMRGKSEVYLKDEPALEDYL 564 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ K G+ + + R+KGLGEM QL ET +D + RTLL+V+I+ + + D Sbjct: 722 DLLDAILKEGEKGLTLQRYKGLGEMNPGQLWETTLDPDARTLLQVKIDD----VAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLD 804 >gi|78484358|ref|YP_390283.1| DNA gyrase, B subunit [Thiomicrospira crunogena XCL-2] gi|78362644|gb|ABB40609.1| DNA gyrase subunit B [Thiomicrospira crunogena XCL-2] Length = 813 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 232/572 (40%), Positives = 346/572 (60%), Gaps = 19/572 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 A YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 5 AENPIQPEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNGIDEALAGHC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + + V++ +G ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGL Sbjct: 65 DKVVVTIHTDGSVSVTDNGRGIPVGLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ELH+T+ R+ ++ Q + G+P PL+ + ++ GT I F P + Sbjct: 124 HGVGVSVVNALSEELHLTIKREGHVWKQTYRHGVPDEPLKAVSET-DETGTEIRFLPSRE 182 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F F LLK + ++L+ V ++ E F F GG++ ++ Sbjct: 183 TFTQT-EFSFDYLLKRLRELSFLNSGVHIELLDKRD-------DRHEVFEFEGGIRAFVD 234 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N++ I+ E F T + TVE A+ W E I + N I +GGTH SG Sbjct: 235 YINANKTPINQEAFYFSTVRDDI---TVEVAMQWSEAYQESIFCFTNNIPQRDGGTHLSG 291 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + +YAE K +S+ DD ++SV + +P+F+ QTK KLVS + Sbjct: 292 FRAALTRTLNQYAEKEGLTKKYKMSVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450 + VE A+ + YL++NP +A + +++ + R RK R RK A+ LP Sbjct: 352 VKTAVETAMNEKLAEYLLENPKDAQSVFAKIVDAARAREAARKAREMTRRKGALDIAGLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ + Sbjct: 412 GKLADCQEKDPARSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLAS 471 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ L+ ALGC +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 472 AEVGTLITALGCGIGHEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIER 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL+++ +G + Y D+ + L Sbjct: 532 GYIYIAQPPLYKVKKGKQEAYLKDDAELENYL 563 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + ++ ++ K I R+KGLGEM QL ET M+A R LL Sbjct: 716 IQRGEKQE---NVSSFKEAMDWLLSEAKRGQSIQRYKGLGEMNPEQLWETTMNAEARRLL 772 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I+ + LMG + + R FI+ A +++ Sbjct: 773 QVTISDAIT----ADQVFTTLMGDEVEPRRNFIESNALKAENID 812 >gi|317050926|ref|YP_004112042.1| DNA gyrase subunit B [Desulfurispirillum indicum S5] gi|316946010|gb|ADU65486.1| DNA gyrase, B subunit [Desulfurispirillum indicum S5] Length = 799 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 248/601 (41%), Positives = 353/601 (58%), Gaps = 34/601 (5%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI++LEGLE VR RPGMYIG T LHHL EV+DN++DE +AG+ + +EV + Sbjct: 4 QAYGADSIKVLEGLEAVRKRPGMYIGSTGITGLHHLVYEVVDNSIDEALAGHCDTVEVVI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIP E H K N+S E++LT LHAGGKFD+S+Y++SGGLHGVGISV Sbjct: 64 HTDNSITVTDNGRGIPTEFH-KEQNRSAAEVVLTVLHAGGKFDSSSYKVSGGLHGVGISV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+EL + + R I Q + RG P PLE + R+ GT+I F PD +IF Sbjct: 123 VNALSEELELEIKRDGKIHRQSYRRGFPQQPLEVVGETRS-TGTKIRFLPDSQIFET-TE 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L + +A+L+ V + ++ + + F + GGL++++ +N+ Sbjct: 181 FSYEILSNRLREQAFLNAGVTIIITDER-------VEKTNTFLYEGGLRSFVTFLNKNKQ 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E EK VE A+ + + + +Y N I T +GGTH G + ALTR Sbjct: 234 TLHPEPVHVAGEKNDII---VEIALQYNDTYAETLFTYANNINTVDGGTHLVGFKSALTR 290 Query: 341 GIKKYAELTQNK--RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y + K I++ DD+ ++SV I +P+F GQTK KL + +A+ VE+ Sbjct: 291 CINTYISTAKIKGSEKITLSGDDIREGLTAVISVKIPDPQFEGQTKGKLGTTEAKSVVES 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + F YL +NP A ++L I + R RK RE+ R+ + LPGKLADCS Sbjct: 351 IFGEKFAAYLEENPDVAKQILNKAINAARAREAARKARELTRRKGVLEGNSLPGKLADCS 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ +++I L+ Sbjct: 411 EKDPAKSELYIVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSEEIKILI 470 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG ++ + +RY K+IIMTDADVDGAHI +LLLTFF+++M ++IE+ +L++ Sbjct: 471 TALGTGIGQNDFDINKIRYHKIIIMTDADVDGAHIMTLLLTFFFRQMREIIERGYLYIAQ 530 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFK------KHGKGKIEISRFKGLGEMLASQLKE 630 PPLF+I +G K +Y E+ Q L + K +GK + A Q KE Sbjct: 531 PPLFKIQKGKKEMYVKTEKQLQDYLIDLGLDNVELKDEEGK----------TITAEQCKE 580 Query: 631 T 631 Sbjct: 581 Y 581 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 K + GK + I R+KGLGEM A QL +T M + R+LL+V I+ L + Sbjct: 714 YLKFKNYVVERGKKGVGIQRYKGLGEMNADQLWDTTMCPDNRSLLQVSIDD----LVEAD 769 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FI + A + ++ Sbjct: 770 GAFTILMGDNVEPRREFIYDNALNVRNLD 798 >gi|110832865|ref|YP_691724.1| DNA gyrase subunit B [Alcanivorax borkumensis SK2] gi|110645976|emb|CAL15452.1| DNA gyrase, subunit B [Alcanivorax borkumensis SK2] Length = 805 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 232/580 (40%), Positives = 347/580 (59%), Gaps = 20/580 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 A YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I+ Sbjct: 2 AEKKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIK 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +++ DNGRGIP E H + S E+I+T LHAGGKFD++TY++SGGLHGVG Sbjct: 62 VVIHPDESMSIQDNGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+EL +T+ R + Q ++ G+P PLE + GT + FRP P+ F + Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V+ ++ E + F + GGL ++ Sbjct: 180 I-KFHYDILAKRLRELSFLNSGVRIHLMDERSGDE-------DVFEYEGGLSAFVSYLNT 231 Query: 279 NRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + E+ G VE A+ W + I + N I +GGTH +G R Sbjct: 232 NKTPLNQVFHFNYEREEDGI---AVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y + K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE + D F YL++NP EA +++ +I+ + R RK RK A+ LPGKL Sbjct: 349 AVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC Q +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYV 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 ++ PPL+++ +G + Y D+ ++ L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDDPAMEEYLTTLALDKTGLY 568 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 H + L+ + R+KGLGEM A QL ET MD R +L+V I + Sbjct: 718 RHFAEALDWLMAQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAI----A 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG D R +FI+ A + ++ Sbjct: 774 ADQIFTCLMGDDVDPRRRFIESNALQVSNLD 804 >gi|225023582|ref|ZP_03712774.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC 23834] gi|224943677|gb|EEG24886.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC 23834] Length = 657 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 248/670 (37%), Positives = 364/670 (54%), Gaps = 40/670 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y SSI++L+GLEPV+ RPGMY T + H+ E IDNA DE + G+A+ I+V Sbjct: 2 TKQYSESSIKVLKGLEPVKERPGMY---TRTDSPTHICQEAIDNAADEALGGFASRIDVE 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLHG 156 + +G L+V DNGRGIPV HP+ N +E++ T LHAGGKF+ + Y SGGLHG Sbjct: 59 IHEDGSLSVSDNGRGIPVGLHPE-ENVPVVELVFTRLHAGGKFNKTSGDGAYAFSGGLHG 117 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKI 215 VG+SV NALS L V V R+ + F G + PL + K GT + PD Sbjct: 118 VGVSVTNALSRRLEVAVRREGCEYRIAFVGGDVVEPLTETGKCPAKDSGTTLRIWPDA-R 176 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 + + +D A + ++ ++KA L V + G+PE + +++P GL+ YL+T Sbjct: 177 YFESPNYDIAEIERLLRAKAVLLPGVTVTLT-----RWHNGLPETQTWHYPDGLEGYLKT 231 Query: 276 KLENRSLISS-----EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGT 329 L + +G V A+ W EE SY N I T GGT Sbjct: 232 LLAEQENTLPLLTLQNHVSGSHHGDFADGEGVSCALTWLEEGRITTESYVNLIPTPAGGT 291 Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 HE+GL+ AL + + R + I SDD+ +LSV + +P+F GQTK KL Sbjct: 292 HEAGLKQALFNAVSNFITHHNLLPRGVKIQSDDVFNRVAFVLSVRMLDPQFQGQTKDKLT 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 + DA + V + DP + +L QN K+ E I++++ER+R +++ ++ Sbjct: 352 NRDALKLVASLAGDPVELWLNQNLEAGKKIAELAIKQAQERMRSV--KKIEKRKGSGISV 409 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC ELF+VEGDSAGGSAK AR+R+ QA+LPLRGK+LN +++ Sbjct: 410 LPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDRNTQAILPLRGKVLNSFEVHRDQLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G + DL RY K+ I++DADVDG+HI LLLT FY+ + Sbjct: 470 ANTEIHDISVAIGVDPHGEGDSPDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPE 529 Query: 566 LIEQKHLFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 LI + H+++ PPLFR+ + + YA D+ + ILE+ +K G + + ISR Sbjct: 530 LIRRGHIYVAQPPLFRVDVAAQGRKKTARKFYALDQTELEGILEKLRKEGLRENQYSISR 589 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM QLK+T M + R LLRV I + +S + T + KLMG ++ +R +++ Sbjct: 590 FKGLGEMNPDQLKDTTMHPDTRRLLRVHIPE--HSSEPTHNVFVKLMGKGESAQRRSWME 647 Query: 676 ERASFIDDVG 685 + + Sbjct: 648 AEGDKAE-LD 656 >gi|294668663|ref|ZP_06733759.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309425|gb|EFE50668.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 796 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 229/596 (38%), Positives = 340/596 (57%), Gaps = 24/596 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 7 EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 67 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL +K+GT + F + FG+ Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGD-SDKKGTTVRFLASAETFGNV- 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V +++ + E F GG+ ++Q + Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 354 EVINQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL++ G + Y DE K + L + R + ++L +T Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L + + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDVDSFETALNILLQTAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|169632033|ref|YP_001705769.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii SDF] gi|169150825|emb|CAO99425.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii] Length = 822 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 229/581 (39%), Positives = 343/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEEESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G TVE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---TVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|323516067|gb|ADX90448.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii TCDC-AB0715] Length = 822 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 342/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPSAETFSQTI-FNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTADADNGI---AVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q + L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQDVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFKLIEDG-AYL--------QKGDRRIQVAN---FHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|118590457|ref|ZP_01547859.1| DNA gyrase subunit B [Stappia aggregata IAM 12614] gi|118436920|gb|EAV43559.1| DNA gyrase subunit B [Stappia aggregata IAM 12614] Length = 817 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 237/581 (40%), Positives = 344/581 (59%), Gaps = 16/581 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 PD+ + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 4 TSTPDNSPTPETNGGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD Sbjct: 64 IDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHSE-EGVSAAEVIMTQLHAGGKFDQ 122 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R S F+ G ++PL+ ++GT Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTKLELRIWRNGQEHSMTFAHGDAVAPLKVVGPANGRKGT 182 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF P P F FD + L + A+L+ V+ + + + ++ EE ++ Sbjct: 183 EVTFLPSPDTFTKT-EFDFSTLEHRLRELAFLNSGVRIILTDKRGVEDRV-----EELFY 236 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + + E+ G TVE A+ W + E + N I Sbjct: 237 EGGLEAFVRYLDRAKHPLIEAPINMRAERDGI---TVEAAMWWNDSYHEHVLCFTNNIPQ 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + YAE T K +++ DD +LSV + +P+F+ Q Sbjct: 294 RDGGTHLAGFRAALTRQVTGYAESTGLMKKEKVNLSGDDCREGLTCVLSVKVPDPKFSSQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS + + VEN + +L +NP A ++ V+E + R RK RE RK Sbjct: 354 TKDKLVSSEVRPVVENLISQILSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRK 413 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + A ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV Sbjct: 414 GALDIASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ +I L+ ALG + E LRY K+IIMTDADVDGAHI +LLLTFF+ Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M LIE ++++ PPL+++ +G Y D++ + L Sbjct: 534 RQMPQLIENGYIYIAQPPLYKVKRGQSEQYLKDQKALEDYL 574 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L + G+ I + R+KGLGEM QL ET +D N R+LL+V++ D D Sbjct: 733 RALLTQIYAAGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 788 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + + R +FIQE A + ++ Sbjct: 789 IFTKLMGDEVEPRREFIQENALAVANLD 816 >gi|99079848|ref|YP_612002.1| DNA gyrase subunit B [Ruegeria sp. TM1040] gi|99036128|gb|ABF62740.1| DNA gyrase subunit B [Ruegeria sp. TM1040] Length = 805 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 225/580 (38%), Positives = 337/580 (58%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SENEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V++ + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADRVTVTIHADSSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG + L ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ + ++ + E ++ GG+ ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIVVADER-----PAERLESELFYEGGVNEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ + K EK VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKTPVMDAPIYIKGEKDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINSYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP A +++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ + Sbjct: 412 AGKLKDCSEKDPAKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ L G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAAMDDYLINQGVDG 571 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 722 DLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MIEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|298370306|ref|ZP_06981622.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281766|gb|EFI23255.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 796 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 229/596 (38%), Positives = 340/596 (57%), Gaps = 24/596 (4%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 7 KEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 67 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL+ +K+GT + F + FG+ Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAETFGNV- 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V +++ + E F GG+ ++Q + Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELIDERD-------GKHESFALSGGVAGFVQYMNRKK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 354 EVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 414 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 474 ITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 PPL++ G + Y DE K + L + R + ++L +T Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELADT 584 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L ++ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDVDSFETALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|119897406|ref|YP_932619.1| DNA topoisomerase IV subunit B [Azoarcus sp. BH72] gi|119669819|emb|CAL93732.1| topoisomerase IV subunit B [Azoarcus sp. BH72] Length = 657 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 243/662 (36%), Positives = 341/662 (51%), Gaps = 28/662 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 S YD SS R+L+GLEPVR RPGMY T + H+ EVIDNA DE + G+A I V Sbjct: 2 TSKTYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFAKKIHV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155 +L +G +TV D+GRGIPV HP+ + + T LHAGGKFD N Y SGGLH Sbjct: 59 TLHLDGSVTVADDGRGIPVGLHPE-EGVPVVVLAYTRLHAGGKFDKREGNGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRG-IPLSPLEKKEKVRNKRGTRITFRPDPK 214 GVG++V NALS + V V R I FS G + + + + GTR+ PDPK Sbjct: 118 GVGVAVTNALSTRVEVEVKRDGKIHRIDFSDGGENIGAVRIEGDCGRQTGTRVRVWPDPK 177 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F L ++ +SKA L V ++ G LK Sbjct: 178 YFEAPR-VPMNELERLLRSKAVLLSGVSVRLDIEQAAGPALTKTWSYPEGLAGYLKELAG 236 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 + ++E + GK + WA+AW E SY N I T GGTHESGL Sbjct: 237 DVEPVAPIFTAEKYAGKDDASFAPGEGAAWALAWFESAVPSESYVNLIPTVNGGTHESGL 296 Query: 335 RVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 R + +K + E R + + +D+ +LS + +P+F GQ K KL S +A Sbjct: 297 RAGVFEAVKSFIEHHTLLPRGVKLQQEDVCGRMSFLLSARLLDPQFQGQVKEKLNSREAV 356 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 + V LRDPF+ +L + + E I+++ R + ++ E + + + L PGKL Sbjct: 357 KLVSTQLRDPFEIWLNNHVEAGKAIAELSIKQALARQKNAQKVEKKKTSGVAVL--PGKL 414 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 +DC ELF+VEGDSAGGSAK ARN+ QA+LPLRGK+ N +++ N +I Sbjct: 415 SDCESEDIAENELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEIDPDRLLANAEI 474 Query: 514 MDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 D+ ALG DL RY K++IM+DADVDG+HI +LLLT F++ LIE Sbjct: 475 HDIAVALGVDAHRADSSPDLSGLRYGKIVIMSDADVDGSHIQTLLLTLFFRHFPKLIENG 534 Query: 571 HLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621 H+++ PPL+R+ QG K +YA D+ I + + G IEI RFKGLG Sbjct: 535 HIYVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLAQEGFKPDAIEIGRFKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680 EM QL+ET MD R +L V++ +++ T LMG +A R +++E+ Sbjct: 595 EMNPDQLRETTMDPATRRVLPVQV--RAEAIEQTLKMFTLLMGKGEASGRRAWMEEKGDT 652 Query: 681 ID 682 ++ Sbjct: 653 VE 654 >gi|255261451|ref|ZP_05340793.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62] gi|255103786|gb|EET46460.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62] Length = 805 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 226/578 (39%), Positives = 340/578 (58%), Gaps = 16/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N+ +++ Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 4 NEQSNEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 HVAVTIHADHSVSVSDNGRGIPVGMHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + V R + KFS G + L + + + ++GT + F Sbjct: 123 GVGVSVVNALSVWLELRVWRDDKEHYAKFSHGETVEHLRVEGEAKGRKGTEVRFLASTDT 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + + A+L+ VK ++ + ++ GG+K +++ Sbjct: 183 FSNL-EYSFEILERRLRELAFLNSGVKIILRDER-----PAEALETTLFYDGGVKEFVKY 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +++ + + EK +E A+ W + E + N I +GGTH +G Sbjct: 237 LDRSKTAMIEDPIFIVGEKDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + + + +NP EA ++ +IE + R RK RE RKTA+ L G Sbjct: 354 RPAVESLMNEKLSEWFEENPNEARLIVSKIIEAAVAREAARKARELTRRKTALDVNFLAG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ +Q Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQ 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG R +++ E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 474 EIGNLVMALGTGIGRDEFKIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++ +G VY D+ L + G Sbjct: 534 YLYIAQPPLYKVARGRSEVYLKDQAALDDYLIDQGIDG 571 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V++ + + D Sbjct: 722 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVED----MAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804 >gi|322417549|ref|YP_004196772.1| DNA gyrase subunit B [Geobacter sp. M18] gi|320123936|gb|ADW11496.1| DNA gyrase, B subunit [Geobacter sp. M18] Length = 796 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 238/577 (41%), Positives = 351/577 (60%), Gaps = 18/577 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + ++Y A I+ILEGLE VR RP MYIG T + LHHL E++DNA+DE +AGY + Sbjct: 2 SSEEQNDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V++ +G +TV DNGRGIP + HP +S E++LT LHAGGKFDNS+Y++SGGLHG Sbjct: 62 VQVTIHLDGTVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS L + + R +++Q + RG+P +PL + + RGT+ITF PD +IF Sbjct: 121 VGSSVVNALSTRLELEIRRNGHLYTQSYRRGVPQAPLAITGETKR-RGTKITFLPDGEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F L K + A+L+ V+ ++ + +F++ GG++++++ Sbjct: 180 ET-TEFSFDILSKRLRELAFLNAGVRIKIHDER-------TEKDHDFFYEGGIRSFVEYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N++L++ + K EK G +E A+ + + ++ S+ N I T EGGTH G + Sbjct: 232 NKNKNLVNPDPIYIKGEKGGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFK 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +LTR + YA + + I +DL ++SV I +P+F GQTKTKL + + + Sbjct: 289 ASLTRTMNNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE + + YL +NP A K+LE I+ + R RK RE RK A+ LPGK Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q+ Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ ALG + + LRY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ + Sbjct: 469 IRTLISALGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 L++ PPL++I +G K Y +E Q L E Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQSYLLEEGTED 565 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Query: 594 EEHK-QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 E + ++IL F + K + I R+KGLGEM QL ET M R LL+V+I + Sbjct: 707 ETERQEEILSFFLESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV--- 763 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ LMG + + R FI++ A + ++ Sbjct: 764 -AAEEIFTVLMGDQVEPRRDFIEQNALNVSNLD 795 >gi|261400946|ref|ZP_05987071.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970] gi|269209189|gb|EEZ75644.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970] Length = 796 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 226/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +KRGT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKRGTTVRFLAGTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE K + L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++ L+ ++ + + I R+KGLGEM QL ET MD + R LL+V + + Sbjct: 706 YPVGSFEEALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPSVRRLLKVHVEDAI-- 763 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + + R FI+ A ++ Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|302830013|ref|XP_002946573.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f. nagariensis] gi|300268319|gb|EFJ52500.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f. nagariensis] Length = 676 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 237/662 (35%), Positives = 363/662 (54%), Gaps = 34/662 (5%) Query: 50 RILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD-GNGFLT 108 ++LEGLEPVR RPGMYIGGT + LHHL EV+DN++DEV AG+A +EV +D +G++ Sbjct: 21 QVLEGLEPVRKRPGMYIGGTGSEGLHHLVWEVVDNSVDEVQAGHATRVEVQVDLSSGWVV 80 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLHGVGISVVNALS 166 V D+GRGIPV+ HP KS LE +LT LHAGGKF ++S Y++SGGLHGVGISVVNALS Sbjct: 81 VTDDGRGIPVDVHP-VTGKSALETVLTVLHAGGKFGGEDSGYKVSGGLHGVGISVVNALS 139 Query: 167 DELHVTVARQNTIFSQKFSRGIPLSPLEKKE-----KVRNKRGTRITFRPDPKIFGDKAG 221 ++L VTV R +SQ++SRG+ L +++ E + ++ GT++ F D IF Sbjct: 140 EQLTVTVWRAGVRYSQRYSRGVALEEVQRTELQPDSEEADRTGTQVCFLYDRTIFASDVS 199 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 ++ + A+L+ ++ ++ E + F F GGL+ ++ + Sbjct: 200 YNPDIIATRLHELAFLNSSATMRFNATRKGQ---LDGEWQVFQFSGGLREFVGCLQSGYT 256 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 + I +++ A EI + N+I T +GGTH LR ALTR Sbjct: 257 PLHEAICVSRSDPPSGVVVHAALQWAADSFREEIRGFANSIHTADGGTHLDALRSALTRT 316 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I A+ + + + + +++V + PEF GQTKT+L + + ++ VE Sbjct: 317 ITALAKKMKLIKEGDPPLSGEHIREGLGAVIAVQVPNPEFEGQTKTRLGNPEVRKIVEAT 376 Query: 400 LRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 + + +L +P + + LL + + R+ + + RKT++ + LPGKLADC+ Sbjct: 377 VAEAVGEWLEAHPADLSALLGKALTAARAADAARKARELIRRKTSLSRSMLPGKLADCTS 436 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 TE+++VEGDSAGGSAKQAR+R QAVLPL+GKILNV + N +I L+ Sbjct: 437 EERDRTEIYLVEGDSAGGSAKQARDRRFQAVLPLKGKILNVERVAGAAMYKNAEISSLIV 496 Query: 519 ALGCRTR--------------SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ALG T + L Y K++I+TDADVDGAHI +LLLTF ++ Sbjct: 497 ALGLGTDRAPALATRGPDVAVRDTASKALEYGKIVILTDADVDGAHIRALLLTFLFRYRP 556 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 L H+++ PPL+++ +G +AH EE ++++ E + G + RFKGLGEM+ Sbjct: 557 QLFYAGHVYVAVPPLYKVERGRSLWWAHTEEELRRVVSE-NRLAPGGYSVQRFKGLGEMM 615 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL +T ++ R L R+ + + + LMG + R IQE ++ + + Sbjct: 616 PQQLWDTTLNPATRLLRRLTV----RDAAEADALLTSLMGAQVGPRKALIQEYSNRLQSI 671 Query: 685 GT 686 + Sbjct: 672 SS 673 >gi|226942154|ref|YP_002797228.1| DNA gyrase subunit B [Laribacter hongkongensis HLHK9] gi|226717081|gb|ACO76219.1| GyrB [Laribacter hongkongensis HLHK9] Length = 797 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 222/575 (38%), Positives = 343/575 (59%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A SI++L+GL+ VR RPGMYIG T D LHH+ EV+DN++DE +AG+A+ + Sbjct: 2 SEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNSIDEALAGHADTVR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+++ + ++V DNGRGIP + HP+ +S E+I+T LHAGGKFDN++Y+ISGGLHGVG Sbjct: 62 VTINPDNSVSVEDNGRGIPTDIHPE-EGRSAAEVIMTILHAGGKFDNNSYKISGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG P++PL+ + RGT +TF + FG Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEPVAPLKVTGQTT-HRGTEVTFMASTETFGT 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + L K + ++L+ V + ++E F F GG+ +++ Sbjct: 180 I-EYHYDILAKRIRELSFLNNGVGITLAD-------RLHGKEENFAFSGGVAGFVEYMNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++++ ++F +K+G TVE A+ W + + + N I +GGTH + LR Sbjct: 232 NKTVLHPKVFHTIGDKEG---MTVEVAMQWNDSYQENVQCFTNNIPQRDGGTHLTALRQV 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + +Y E K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 MTRTLNQYIEENDIAKKAKVETTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454 V + + +L++NP++A + ++E + R RK RE+ R+ + L LPGKLA Sbjct: 349 VNEIISEALKTFLLENPVDAKTITGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 DCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMIASQEVA 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G + Y + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 469 TLITAMGTSIGKDDYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ G + Y D+ + L E Sbjct: 529 IAQPPLYKLKHGKQERYLKDDSELNQYLLELALDN 563 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 L+ + + I R+KGLGEM QL ET MD + R LL+V I + Sbjct: 708 TVSEFGMALDWLMGEVRRGMSIQRYKGLGEMNPGQLWETTMDPSVRRLLKVRIEDAM--- 764 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D LMG + + R FI+ A ++ Sbjct: 765 -AADDVFTTLMGDQVEPRRHFIESNALIARNID 796 >gi|313667526|ref|YP_004047810.1| DNA gyrase subunit B [Neisseria lactamica ST-640] gi|309378243|emb|CBX23128.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313004988|emb|CBN86416.1| DNA gyrase subunit B [Neisseria lactamica 020-06] Length = 796 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 225/571 (39%), Positives = 332/571 (58%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLAGTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISRALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE K + L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWL 559 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++ L+ ++ + + I R+KGLGEM QL ET MD R LL+V + + Sbjct: 706 YPVGSFEEALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRVEDAI-- 763 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + + R FI+ A ++ Sbjct: 764 --AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|163757528|ref|ZP_02164617.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43] gi|162285030|gb|EDQ35312.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43] Length = 811 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 241/577 (41%), Positives = 348/577 (60%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 TDTPETDPTVEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+ + V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADRVTVTLNPDGSVTVTDNGRGIPTDMH-QGEGISAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + V R+ I +F+ G+ +PL+ ++ GT +TF Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLVVRRKGKIHEIRFTHGVADAPLQVLGDCGDETGTEVTF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F FD L + A+L+ V+ + + K Y+ GGL Sbjct: 181 MPSSETFT-MIDFDFGTLEHRLRELAFLNSGVRILLADRRHSDAKELE-----LYYEGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + +++ ++ + ++ T EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVRYLDRSKKPLVNDPVTLIGEKDGI---TVELAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+++ K +S+ DD +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQMVSYADVSGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VEN + +L ++P EA L+ VIE + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVENLVNSTLSSWLEEHPTEAKTLVGKVIEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LIE+ HL++ PPL+++++G S Y DE+ ++ L Sbjct: 532 VLIERGHLYIAQPPLYKVSRGKSSQYLKDEKAMEEYL 568 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V +N + D Sbjct: 727 RELLDAVFSVGRKGLALQRYKGLGEMNAEQLWETTLDPNARSLLQVRVNDAV----DADS 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R +FIQ+ A + ++ Sbjct: 783 LFSRLMGDEVEPRREFIQDNALSVANLD 810 >gi|161870850|ref|YP_001600023.1| DNA gyrase subunit B [Neisseria meningitidis 053442] gi|161596403|gb|ABX74063.1| DNA gyrase subunit B [Neisseria meningitidis 053442] Length = 814 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 229/612 (37%), Positives = 342/612 (55%), Gaps = 24/612 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDN 84 + + + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DN Sbjct: 9 AKSFQNPAKNMTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDN 68 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+ + I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFD Sbjct: 69 AIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFD 127 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 N++Y+ISGGLHGVG+SVVNALSD + +T+ R +F RG PL+ +K+G Sbjct: 128 NNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKG 186 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F + FG+ + L K + ++L+ V + +++ + E F Sbjct: 187 TTVRFLASTETFGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFA 238 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 GG+ ++Q ++ + +IF EK G +VE A+ W + + + N I Sbjct: 239 LSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIP 295 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 +GGTH + LR +TR I Y E + K + DD+ +LSV + +P+F+ Sbjct: 296 QRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSS 355 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK KLVS + V + +L +NP EA + +++ + R RK RE+ R+ Sbjct: 356 QTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRR 415 Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + L LPGKLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV Sbjct: 416 KGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVE 475 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A EK+ +Q++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFF Sbjct: 476 KARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFF 535 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 Y++M +L+E+ ++++ PPL++ G + Y DE K + L I R Sbjct: 536 YRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR--- 592 Query: 620 LGEMLASQLKET 631 + ++L +T Sbjct: 593 --TIEGAELADT 602 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 717 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 770 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 771 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 814 >gi|254465523|ref|ZP_05078934.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I] gi|206686431|gb|EDZ46913.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I] Length = 805 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 225/580 (38%), Positives = 333/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVTVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG + LE ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTVKHLEVVGDCGDRTGTEVRFMAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ E Y+ GG++ ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKITAELYYEGGVREFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ + EK VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRHKTPVMDAPVYIVGEKD---YIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP +A +++ ++E + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ + Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++ +G VY D+ L G Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALDDYLINQGVDG 571 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 723 LLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDLF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804 >gi|77358986|ref|YP_338561.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis TAC125] gi|76873897|emb|CAI85118.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas haloplanktis TAC125] Length = 808 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 350/581 (60%), Gaps = 18/581 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIFV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V DNGRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHLDGSVSVRDNGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q +S G+P +PL + GT + F P + F + Sbjct: 121 SVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIGDA-DTTGTELRFWPSDQTFTNL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V + ++E + + F + GG++ +++ N Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILNDERE------ENKSDHFKYEGGIRAFVEYLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +F ++ VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHKGVFHFTHTRE-EDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSAL 291 Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 292 TRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + F +L+++P +A ++ +I+ S R RK R RK A+ LPGKL Sbjct: 352 AVEQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++ Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ + L + Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVEYLTTLALNNATLYT 572 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ ++ LE K + I R+KGLGEM SQL ET MD + R +L Sbjct: 711 IQRGEKTQ---PVDNFVDALEWLIAESKRGLYIQRYKGLGEMNPSQLWETTMDPDARRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + + LMG + + R +FI++ A + ++ Sbjct: 768 QVTVEDAV----AADQLFATLMGDQVEPRREFIEQNALRVVNLD 807 >gi|325123497|gb|ADY83020.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter calcoaceticus PHEA-2] Length = 822 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 226/581 (38%), Positives = 344/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+ + R + Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P ++ + F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ + G VE A+ W E + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + + + + I R+KGLGEM A QL ET MD R +L+V I+ + + Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R FI+E A D + Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822 >gi|84394122|ref|ZP_00992856.1| DNA gyrase subunit B [Vibrio splendidus 12B01] gi|84375268|gb|EAP92181.1| DNA gyrase subunit B [Vibrio splendidus 12B01] Length = 805 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 231/566 (40%), Positives = 344/566 (60%), Gaps = 17/566 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I V Sbjct: 2 SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDSSVSVSDDGRGIPTELHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS ++ +T+ R I +Q + G P +PL +K GT I F P + F + Sbjct: 121 SVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEETFNNI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F + GG++ +++ N Sbjct: 180 -EFHYDILAKRLRELSFLNSGVSIKLIDKRE------EDKMDHFEYEGGIQAFVEHLNTN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I +IF E++ TVE A+ W + I + N I +GG H +G R AL Sbjct: 233 KTPIIQKIFHFDHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGAL 290 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K S DD I+SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E+ + + +L++NP EA + +I+ + R RK RK A+ LPGKLAD Sbjct: 351 ESTMGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 471 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DE+ + Sbjct: 531 AQPPLYKVKKGKQEQYIKDEDAMNQY 556 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L K + + + R+KGLGEM QL ET MD R +++V I + Sbjct: 722 EALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG----ADLL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+E A + ++ Sbjct: 778 FTTLMGDQVEPRRNFIEENALKVANLD 804 >gi|297571340|ref|YP_003697114.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum DSM 20595] gi|296931687|gb|ADH92495.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum DSM 20595] Length = 701 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 243/706 (34%), Positives = 351/706 (49%), Gaps = 65/706 (9%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A + +LEGLE VR RPGMYIG TD + L H E+IDNA+DE G+A I Sbjct: 2 PQTKEEYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCAWEIIDNAVDEATEGFATSI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++L + + V D+GRGIPV+ P S +E++ T LHAGGKF +Y SGGLHGV Sbjct: 62 SITLHPDTSVEVSDDGRGIPVDEVP-GTGASGVEVVYTKLHAGGKFGGGSYSSSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP--------------------LSPLEKKE 197 G SVVNALS L V V R + F RG P SPL Sbjct: 121 GASVVNALSQRLDVAVKRNGKVHEISFQRGEPGMFDDSGNPSPDATFKPALDESPLRITG 180 Query: 198 KV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 KV + GTR+ + DP+IF + F L++ + KA+L + S + Sbjct: 181 KVAKKTTGTRVRYWYDPQIFPSDSQFSYDALIERVREKAFLVPGLTIRVSDLR-----GE 235 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----------------KKGTHR 299 P +EEF + GG+ ++ + ++ S+ TG+ Sbjct: 236 EPVEEEFTYNGGVVDFVDFLASDPAVTSTMHLTGEGTFTETVQVLDKKSGHLKASDVERT 295 Query: 300 GTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-----KR 353 V+ A+ W I S+ N I T +GGTH +G L + ++ + R Sbjct: 296 CVVDIALRWGSGYETIEESFVNIIATPKGGTHVTGFEQGLVKVLRTAIDQKSRQLKVTAR 355 Query: 354 AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDPFDHYLV 409 I DD++ +++V EP+F GQTK L + + + VE L Sbjct: 356 DPRIEKDDILAGLSAVVAVRFPEPQFEGQTKEILGTAPIRAIVAKVVETELSAILASTKR 415 Query: 410 QNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAHGTELFI 468 E ++LLE ++ R+ R Q+E++R+ A+ LP KLADC +ELFI Sbjct: 416 DQKTENSRLLEKIVAEMRARVAARTQKEISRRKNALETSSLPAKLADCRAEDVERSELFI 475 Query: 469 VEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQY 528 VEGDSA G+AK ARN QA+LP+RGKILNV A I NQ++ ++Q +G + + Sbjct: 476 VEGDSALGTAKLARNSEFQALLPIRGKILNVQKASPADILKNQEVSSIIQVIGAGSGRTF 535 Query: 529 REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------ 582 + RY KVI MTDADVDGAHI +LLLT F++ M L+E ++ PPL RI Sbjct: 536 DLDAARYGKVIFMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVYAAVPPLHRIEVAGQG 595 Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + +Y + + K L + ++ K K I R+KGLGEM A QL ET MD R+L Sbjct: 596 RRKGEYIYTYSDTQLHKELTKLERAKKSYKEPIQRYKGLGEMDADQLAETTMDPAHRSLR 655 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 R+ + + +L+ +++ LMG+ R +FI + A+ I D + Sbjct: 656 RISMADE-AALRYAEETFELLMGSDVAPRKEFIIDGAAHISRDQID 700 >gi|293611381|ref|ZP_06693677.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826253|gb|EFF84622.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 822 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 226/581 (38%), Positives = 344/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+ + R + Q++ G P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P ++ + F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPS-ELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ + G VE A+ W E + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTENGI---GVEVALQWNESYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + + + + I R+KGLGEM A QL ET MD R +L+V I+ + + Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R FI+E A D + Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822 >gi|126738622|ref|ZP_01754327.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6] gi|126720421|gb|EBA17127.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6] Length = 805 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 227/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SENEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ HP+ S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVTVKIHADSSVSVGDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG LE ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLEVVGDCGDRTGTEVRFMAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ E ++ GG+K ++ Sbjct: 181 DTFSNL-EYSFETLEKRLRELAFLNSGVRIILEDER-----PAEKLTAELFYDGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ + EK VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRHKTPVMEAPVYIVGEKDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP +A +++ ++E + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLMGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPLF++ +G VY D+ L G Sbjct: 532 GGYLYIAQPPLFKVARGKSEVYLKDQAALDDYLINQGVDG 571 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 722 DLLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDD----MVEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|187250428|ref|YP_001874910.1| DNA gyrase subunit B [Elusimicrobium minutum Pei191] gi|186970588|gb|ACC97573.1| DNA gyrase, B subunit [Elusimicrobium minutum Pei191] Length = 825 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 225/589 (38%), Positives = 335/589 (56%), Gaps = 22/589 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + NYD+S I++LEGLE VR RP MYIG T LHHL EV+DN++DE++AG A Sbjct: 6 KEKEQKNYDSSKIQVLEGLEAVRKRPAMYIGSTGLPGLHHLVYEVVDNSVDEILAGGATK 65 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENH-----PKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 I V++ + +V D+GRGIPV+ PK KS LE+++T LHAGGKFD+ Y++S Sbjct: 66 ISVTIKDDMTCSVADDGRGIPVDPMVNAKDPKLKGKSALEVVMTVLHAGGKFDSGAYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+S VNALS+ L V V + + Q++ RG P +++ + +GT +TF+ Sbjct: 126 GGLHGVGVSCVNALSEYLEVVVNKDGKQYFQRYHRGKPEEKVKEIGAAKE-KGTTVTFKA 184 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D +IFG+ F + + A+L+ VK + ++ P+ F++ GG+ Sbjct: 185 DTEIFGE-LSFSYDTIANRLRELAFLNAGVKIILTDER-----GDEPKTHTFFYEGGISQ 238 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 +++ N++ + +E E + + +AI + + I S+ N I T EGGTH Sbjct: 239 FVKYINSNKTTLHAEPIYLTKEINNNY---ISFAIQYNDSYSENIYSFVNNINTIEGGTH 295 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 SG R +LTR I +Y + + +++ DD+ +LSV I P+F GQTKTKL Sbjct: 296 LSGFRSSLTRVINEYIKDNGLLKNKEVNVTGDDMREGLTAVLSVKIPHPQFEGQTKTKLG 355 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 + + + V + + D + +NP A + E I + R RK R+ RK+A+ Sbjct: 356 NSEIEGIVRSMVGDALTTFFEENPKTAKAVCEKCIGAAVAREAARKARDLTRRKSALEGG 415 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + +A ELFIVEG+SAGGSAKQ R+R QA+LPLRGK+LNV A KI Sbjct: 416 GLPGKLADCQERVAERCELFIVEGNSAGGSAKQGRDRVFQAILPLRGKVLNVEKAQLVKI 475 Query: 508 RNNQQIMDLVQAL---GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 +N++I L AL + LRY K+++M DADVDG HI +LLLTFFY+++ Sbjct: 476 LSNEEIRTLFTALGTGVGEGEGGFDISRLRYHKIVLMADADVDGQHITTLLLTFFYRQLR 535 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 LIE H+++ PPL+++ +G Y EE L + + ++ Sbjct: 536 PLIEAGHVYIAQPPLYKVKKGKNEQYLQTEEQLVNWLSKEGINSTSVVK 584 Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 PLF + G V+ + + K G I R+KGLGEM QL ET MD K Sbjct: 724 PLFTVNTGKSDVFVYSLHEL---FKTVKDAGSSGSTIQRYKGLGEMNPEQLWETTMDPAK 780 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+L++VEI D + LMG K + R FI+ A + ++ Sbjct: 781 RSLIKVEIQD----AADAEQIFTTLMGDKVEPRRAFIESHALEVKNLD 824 >gi|160331171|ref|XP_001712293.1| gyrB [Hemiselmis andersenii] gi|159765740|gb|ABW97968.1| gyrB [Hemiselmis andersenii] Length = 688 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 255/658 (38%), Positives = 369/658 (56%), Gaps = 31/658 (4%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 NYDA+ I +LEGLEPVR RPG++IG T K LHHL E+IDN++DE + G+ + I +SL+ Sbjct: 46 NYDATKITVLEGLEPVRRRPGVFIGSTGTKGLHHLAYEIIDNSVDEALGGFCDDILISLN 105 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 N LT+ D GRGIP++ HP K+ LE ++T LHAGGKF Y++SGGLHGVG+SVV Sbjct: 106 DNSTLTIKDKGRGIPIDTHP-VTGKTALETVMTILHAGGKFGGGGYKVSGGLHGVGVSVV 164 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDK 219 NALS+ LH+ R S +F RG + ++ K+ +NK GT + F+PD +IF Sbjct: 165 NALSEFLHINTRRLEKGCSMRFVRGKTIGEIKAKKRNFNFKNKNGTSVNFKPDFQIFSST 224 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 +D L A+L+ +K ++ I F GG+ Y+ + + Sbjct: 225 FIYDPFILGGRLNELAFLNSNLKLILQDRRKKNINESI-----FVHNGGISEYIFSLSKK 279 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 ++ + + + E KG V I S+ N I T EGGTH L++ +T Sbjct: 280 KTPLHK-TISIEKELKGI-SVQVALQWTTDHSQENILSFANNIRTIEGGTHLDSLKIVIT 337 Query: 340 RGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + + T + ++ + + GI+SV I EPEF GQTK+KL + D + V+ Sbjct: 338 RTLNFFGRKTGKFKDNFRNLSGEFIREGLTGIISVKIPEPEFEGQTKSKLGNPDVRSIVD 397 Query: 398 NALRDPFDHYLV-QNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + D ++ Q +LE IE + +K RE V RK+ + LPGKLAD Sbjct: 398 TIVSDYLKNFFETQGKDACLSILEKAIEAYQASEAAKKARELVRRKSVLEFTTLPGKLAD 457 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS + +E+FIVEGDSAGGSAKQAR+R QA+LPLRGKI+N+ +I N +I Sbjct: 458 CSLKDPNKSEIFIVEGDSAGGSAKQARDRMFQAILPLRGKIINIEKTDETRIYKNTEIQA 517 Query: 516 LVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG T+ + + + LRY ++IIMTDADVDGAHI +LLLTFFY+ LIE+ +++ Sbjct: 518 LISALGLGTKKENFDINRLRYRRIIIMTDADVDGAHIRTLLLTFFYRYQKKLIEKGLVYI 577 Query: 575 ISPPLFRITQGTKSV-----YAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 PPL++I + K++ Y + + + L + K+ + RFKGLGEM+ QL Sbjct: 578 ACPPLYKIEETGKNLQNFKNYCYSDAELEFSLSK----HIKKLNVQRFKGLGEMMPEQLW 633 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 ET MD KR L RVE++ ++ N LMG K R +FIQ A ++++ Sbjct: 634 ETTMDPEKRVLKRVEVSD----IEKANKIFNVLMGDKVFARKEFIQIHADKMNLENID 687 >gi|184201079|ref|YP_001855286.1| DNA topoisomerase IV subunit B [Kocuria rhizophila DC2201] gi|183581309|dbj|BAG29780.1| DNA gyrase subunit B [Kocuria rhizophila DC2201] Length = 702 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 232/706 (32%), Positives = 345/706 (48%), Gaps = 62/706 (8%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y+A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE +AGY I Sbjct: 2 TPSRSEYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGYGQDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V L +G + V D+GRGIP++ P+ + +E++ T LHAGGKF +Y SGGLHGV Sbjct: 62 AVILHRDGSVEVHDDGRGIPIDTEPR-TGLTGVEVVFTKLHAGGKFGGGSYSASGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------------ 199 G SVVNALS L V V R + F RG P + +K Sbjct: 121 GASVVNALSARLDVQVDRGGKTYQMSFKRGEPGTFADKGAPSPSAPFEAFTTDSHLQVVG 180 Query: 200 ---RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK-- 254 R GTRI + D +IF A F L++ + A+L ++ + ++ + Sbjct: 181 RAKRGVTGTRIRYWADDQIFTPDAKFSTEELVRRARQTAFLIPGLRITVTDERRLPGTAG 240 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTH 298 P +E F + GG+ + + + + G+ + Sbjct: 241 ADGPVEEVFQYDGGISEFAEFLAPDAPVTDVWRLQGQGSFTERVPVLDGSGHAQLQDVER 300 Query: 299 RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RA 354 V+ A+ W + S+ N I T +GGTH SG AL + ++K + K Sbjct: 301 TCEVDVALRWGVGYDTAVRSFVNIIATPKGGTHLSGFENALLKTLRKQVDANTRKLKAGN 360 Query: 355 ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT----VENALRDPFDHYLVQ 410 + DD++ +L+V + EP+F GQTK L + ++ VE L Sbjct: 361 DKLEKDDVLAGLTAVLTVRLAEPQFEGQTKEVLGTPAVRQIVAKVVETELTKQLTSKKRD 420 Query: 411 NPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIV 469 + +A +LLE V+ + R+ R +E RK A+ +P KL +C +ELFIV Sbjct: 421 DKAQAGQLLEKVVAEMKSRISARVHKETQRRKNALETSSMPTKLVECRSADVARSELFIV 480 Query: 470 EGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYR 529 EGDSA G+A+ ARN ++QA+LP+RGKILNV A + N + L+Q +G + + Sbjct: 481 EGDSALGTARLARNSNHQALLPIRGKILNVQKASITDMLANAECAALIQVIGAGSGRSFD 540 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------T 583 + RY KVI+MTDADVDGAHI +LLLT FY+ M L+E ++ PPL R+ + Sbjct: 541 LDAARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVYAAVPPLHRVQIVNPGS 600 Query: 584 QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 + + VY + E +L ++ G+ K I R+KGLGEM A QL ET MD R Sbjct: 601 KANEMVYTYSERELDTLLGSLEEQGRRYKEPIQRYKGLGEMDADQLAETTMDIR----HR 656 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVGT 686 V + + + + + LMG++ R FI AS + + + Sbjct: 657 VLRRVRVADAEAAERAFSLLMGSQVAPRKDFIVAGASHLNQEQIDA 702 >gi|110677620|ref|YP_680627.1| DNA gyrase subunit B [Roseobacter denitrificans OCh 114] gi|109453736|gb|ABG29941.1| DNA gyrase, B subunit [Roseobacter denitrificans OCh 114] Length = 804 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 229/580 (39%), Positives = 338/580 (58%), Gaps = 17/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N + Y A+SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SENDQTPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADAVTVKIHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R+ +F G LE ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMAST 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + + L K + A+L+ V+ ++ E + + ++ GG+K ++ Sbjct: 180 ETFSNL-DYSFETLEKRLRELAFLNSGVRIILIDERPAEE-----LRSDLFYEGGVKEFV 233 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + ++S + E EK VE A+ W + E + N I +GGTH + Sbjct: 234 KYLDRSKSSVMPEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMA 290 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 291 GFRGALTRTINNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 350 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP EA ++ +IE + R RK R+ RKTA+ L Sbjct: 351 EVRPAVEGLVNEKLAEWFEENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFL 410 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 411 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLG 470 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M LIE Sbjct: 471 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIE 530 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 Q HL++ PPL+++++G VY DE ++ L + G Sbjct: 531 QGHLYIAQPPLYKVSRGKSEVYLKDEAAMEEYLIQQGIDG 570 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D + RTLL+V+++ + + D Sbjct: 721 DLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDD----MAEADDL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803 >gi|124267743|ref|YP_001021747.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1] gi|124260518|gb|ABM95512.1| DNA topoisomerase IV subunit B [Methylibium petroleiphilum PM1] Length = 659 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 254/671 (37%), Positives = 360/671 (53%), Gaps = 39/671 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 S+ Y SSIR+L+GLEPV+ RPGMY T H+ EVIDNA DE +AG+ Sbjct: 2 ATKSSSPGRYGESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALAGHG 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L +G ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 59 QRIAVTLHADGSVSVDDDGRGIPFGLHPE-EQVPVVEIVFTRLHAGGKFDKGAGGAYSFS 117 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITF 209 GGLHGVG+SV NALS L V V R+ + + FS G + P+ K ++GT + Sbjct: 118 GGLHGVGVSVTNALSTRLQVEVFREGKVAALAFSGGDVIEPVASRKAGAADRRQGTSVRV 177 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDPK F A L+ + +SKA L V + +K E + + + GGL Sbjct: 178 WPDPKYFES-AELPRNELVHLLRSKAVLMPGVSVTLTHEKS-------GEVQTWRYEGGL 229 Query: 270 KTYLQTKLENRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENP-EITSYCNTILT 324 + YL L+ +I + + E + G W +A+ E+ SY N I T Sbjct: 230 RDYLMQTLQADPVIPLFEGAHYAEEGETENFAEGEGAAWCVAFTEDGQAVRESYVNLIPT 289 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 GGTHESGL+ L + +K + EL + + ++ DD+ A +LS + +P+F GQT Sbjct: 290 VAGGTHESGLKDGLFQAVKGFIELHALCPKGVKLMPDDVFSRASFVLSAKVLDPQFQGQT 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K +L S DA R V ++ F+ +L Q+ KL E VI +++ R R ++ E + + Sbjct: 350 KERLNSRDALRLVSTYVKPAFELWLSQHVEHGRKLAELVIRQAQARQRAGQKVEKRKGSG 409 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 VAVL--PGKLTDCESRDLALNELFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEVE 467 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560 +++ N +I D+ A+G E D LRY K+ I++DADVDG+HI LLLT F+ Sbjct: 468 RDRLFANNEIHDISVAIGVDPHGAADEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFF 527 Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612 + LIE+ H+ + PPLFR+ +G K +YA DE IL++ +K G + Sbjct: 528 RHFPKLIERGHICIAKPPLFRVDAPARGKKPAAKLYALDEGELTAILDKLRKEGARETSW 587 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671 ISRFKGLGEM A QL +T ++ + R LL V L T+ S NKLMG +A R Sbjct: 588 TISRFKGLGEMNAEQLWDTTLNPDTRRLLPVS--WGLLDFGQTEGSFNKLMGKGEAASRR 645 Query: 672 KFIQERASFID 682 + ++ ++ Sbjct: 646 ELMELHGDAVE 656 >gi|170691864|ref|ZP_02883028.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M] gi|170143148|gb|EDT11312.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia graminis C4D1M] Length = 661 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 240/674 (35%), Positives = 358/674 (53%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R + + F+ G PLE + R K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAARGEKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PK F L ++ +SKA L V+ ++ E++ + + GL Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNER-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL + L+ + E+ W +AW EE P SY N Sbjct: 229 RGYLLEGMSGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLREGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKIDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA D+ + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCIARPPLFRVDAPARGKKPAQKLYALDQGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDATVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRNWLEEKGNEVE 658 >gi|182412481|ref|YP_001817547.1| DNA gyrase, B subunit [Opitutus terrae PB90-1] gi|177839695|gb|ACB73947.1| DNA gyrase, B subunit [Opitutus terrae PB90-1] Length = 861 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 219/596 (36%), Positives = 331/596 (55%), Gaps = 22/596 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNA 85 + E N + ++ YDAS I+ LEGLE VR RP MYIG T+E+ LHH EV+DN+ Sbjct: 2 ADESAAEHTAKNLAGAEAYDASKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+LI V++ +G ++ D+GRGIPV+ HP LE++LT LHAGGKF Sbjct: 62 VDEALAGFASLIVVTIHLDGSCSIEDDGRGIPVDMHP-VYKIPALELVLTNLHAGGKFGK 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 Y++SGGLHGVG VNA+S+ V R ++ +F +GI ++ + GT Sbjct: 121 GAYQVSGGLHGVGAKCVNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKK-TGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +ITF+PDP+IF F L K + A+L+ V + ++ + + FYF Sbjct: 180 KITFKPDPEIFKTTREFQYEILSKRLRELAFLNPGVHIELADERSQ-------KGDRFYF 232 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-----HRGTVEWAIAWCEENPEI-TSYC 319 G+ +++ +N++++ + T V+ ++ + + + +Y Sbjct: 233 RDGITEFVRYLNQNKNVVHDKPITFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYA 292 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N+I EGGTH SG R ALTR + +A ++ SI DD+ V ++SV + EP Sbjct: 293 NSIYNIEGGTHLSGFRTALTRVVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEP 352 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 F GQTKTKL + + V+ + + Y N A ++++ + + R RK RE Sbjct: 353 RFEGQTKTKLSNGEIDGIVQRIVGEKLRFYFEANTNIAKRIIDKTLNAARAREAARKARE 412 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RK A+ LPGKLADCS+ EL+IVEGDSAGGSAKQ R+R QA+LPLRGK++ Sbjct: 413 TVRKGALSGGGLPGKLADCSERDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVI 472 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIA 552 NV A +K+ N++I L+ A G + + RY KVIIMTDADVDG+HI Sbjct: 473 NVEKARLDKVLANEEIRTLITAFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIR 532 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +LLLTF Y++M L ++ +++ PPL++I + + Y +++ +IL E Sbjct: 533 TLLLTFLYRQMRGLFDRGFVYIAQPPLYKIKRKKREQYIDNDDQLNRILLELGSED 588 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +I+ E + +G+ + I R+KGLGEM QL ET MD KR LL+V IN Sbjct: 778 EIVTEIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSIND----AAKADAL 833 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI++ A + + Sbjct: 834 FTLLMGDEVPPRRQFIEDNALNVQYLD 860 >gi|83855146|ref|ZP_00948676.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1] gi|83941669|ref|ZP_00954131.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36] gi|83842989|gb|EAP82156.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1] gi|83847489|gb|EAP85364.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36] Length = 804 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 225/573 (39%), Positives = 334/573 (58%), Gaps = 17/573 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ + V+ Sbjct: 9 EEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVT 68 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+S Sbjct: 69 IHDDSSVSVSDNGRGIPVGIHQE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVS 127 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD L + + R+ +F G LE + GT + F + F + Sbjct: 128 VVNALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPT-ERTGTEVRFMASTETFSNL- 185 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + A+L+ V+ + ++ P + E ++ GG+K +++ ++ Sbjct: 186 DYSFETLEKRLRELAFLNSGVRIILTDER-----PAEPLRTELFYEGGVKEFVKYLDRSK 240 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 + + E EK VE A+ W + E + N I +GGTH +G R ALT Sbjct: 241 TSVMPEPIFISGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALT 297 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YA+ + K +S DD +LSV + +P+F+ QTK KLVS + + VE Sbjct: 298 RTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVE 357 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + + +NP A ++ +IE + R RK R+ RKTA+ L GKL DC Sbjct: 358 GLVNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDC 417 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 S+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ +Q+I +L Sbjct: 418 SEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNL 477 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 V ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M LIE HL++ Sbjct: 478 VMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIA 537 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++++G VY D+ + L + G Sbjct: 538 QPPLYKVSRGKSEVYLKDQAAMEDYLIQQGIEG 570 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE G+ + + R+KGLGEM QL ET +D + RTLL+V++ + + D Sbjct: 721 DLLEAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKV----ADMAEADDL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803 >gi|209883685|ref|YP_002287542.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5] gi|209871881|gb|ACI91677.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5] Length = 812 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 246/583 (42%), Positives = 340/583 (58%), Gaps = 14/583 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 E P A+ Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SEPARLPTPDLTVAAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AGYA +EV L+ +G +TV D+GRGIP + H K S E+I+T LHAGGKFD Sbjct: 62 IDEALAGYATRVEVILNPDGSVTVRDDGRGIPTDIH-KGEGISAAEVIMTQLHAGGKFDQ 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R +F G ++PL KRGT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLALRIWRGGKEHYIEFQHGDAVAPLAVVGDAGGKRGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF P+ F +D L + A+L+ V S + E+ EE ++ Sbjct: 181 EVTFHASPETFT-HIEYDFDTLEHRLRELAFLNSGVNILLSDMRHAVERR-----EELHY 234 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GG++ +++ N+ + + + E+ G TVE A+ W + E + N I Sbjct: 235 EGGVEAFVKFLDRNKKAVVDKPIVMRAEQHGI---TVEVAMWWNDSYHENVLCFTNNIPQ 291 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 +GGTH +G R ALTR I YAE K I++ DD +LSV + +P+F+ QTK Sbjct: 292 RDGGTHLAGFRGALTRQITGYAEGMAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 KLVS + + VE+ + +L ++P EA ++ VIE + R RK R+ RK A Sbjct: 352 DKLVSSEVRPVVESIINTALSAWLEEHPTEARTIVGKVIEAAAAREAARKARDLTRRKGA 411 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 LDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERAR 471 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ +++QI L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF+++ Sbjct: 472 FDKMLSSEQIGTLITALGTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQ 531 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 M LIE HL++ PPL+++T+G Y DE + L E Sbjct: 532 MPQLIEAGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 574 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E + G+ + R+KGLGEM QL ET +D N R+LL+V+I + D Sbjct: 730 SLFEAVTEAGRKGVAYQRYKGLGEMNPEQLWETTLDTNARSLLQVKI----REVDAADDI 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 786 FTKLMGDIVEPRREFIQDNSLDA-NVD 811 >gi|121604106|ref|YP_981435.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2] gi|120593075|gb|ABM36514.1| DNA topoisomerase IV subunit B [Polaromonas naphthalenivorans CJ2] Length = 659 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 243/671 (36%), Positives = 349/671 (52%), Gaps = 38/671 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 A N +AS Y SSIR+L+GLEPV+ RPGMY T H+ EV+DN+ DE +AG+ Sbjct: 2 AEKNITASPAYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNSADEALAGH 58 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEI 150 I+V+L +G +++ D+GRGIP HP+ +E++ T LHA K Y Sbjct: 59 GKKIKVTLHTDGSVSIEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGKGGAYSF 117 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRIT 208 SGGLHGVG+SV NALS L VT R+ + S FS G + P L K GT + Sbjct: 118 SGGLHGVGVSVTNALSTRLEVTSYREGKVASLAFSGGDVIEPLVLRPNGNGDRKSGTTVR 177 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 PD K F A L + +SKA L V + +K E + + + GG Sbjct: 178 AWPDAKYFES-PALPMAELTHLLRSKAVLMPGVTVTLTNEK-------TKEVQTWLYKGG 229 Query: 269 LKTYLQTKLENR---SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILT 324 L+ YL L + E F + W +A+ E+ SY N I T Sbjct: 230 LRDYLMQTLTADPVIPMFEEEGFADAAHETFAEGEGASWCVAFTEDGQPVRESYVNLIPT 289 Query: 325 DEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 GGTHESGLR L +K + E + + + ++ +D+ A +LS + +P+F GQ Sbjct: 290 SAGGTHESGLRDGLFTAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQI 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K +L S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + Sbjct: 350 KERLNSRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQSRQKAGQKVEKRKGSG 409 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L PGKL DC E+F+VEGDSAGGSAK R++ NQAVLPLRGK+LN Sbjct: 410 VAVL--PGKLTDCESKDLANNEVFLVEGDSAGGSAKMGRDKENQAVLPLRGKVLNTWEVD 467 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560 +++ N +I D+ A+G D LRY KV I++DADVDG+HI LLLT F+ Sbjct: 468 RDRLFANTEIHDISVAIGVDPHGPNDTPDLSALRYGKVCILSDADVDGSHIQVLLLTLFF 527 Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612 + LIE H+++ PPL+R+ +G K VYA DE IL++ +K G + Sbjct: 528 RHFPKLIETGHVYVARPPLYRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENAW 587 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671 ISRFKGLGEM A QL +T ++ + R L+ V++ T+ I KLMG +A R Sbjct: 588 SISRFKGLGEMSAEQLWDTTLNPDTRRLMPVQL--GNQDFGQTESLITKLMGKGEAAARR 645 Query: 672 KFIQERASFID 682 + ++ ++ Sbjct: 646 ELMELHGDAVE 656 >gi|197116406|ref|YP_002136833.1| DNA gyrase subunit B [Geobacter bemidjiensis Bem] gi|197085766|gb|ACH37037.1| DNA gyrase, B subunit [Geobacter bemidjiensis Bem] Length = 796 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 239/576 (41%), Positives = 349/576 (60%), Gaps = 18/576 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N +Y A I+ILEGLE VR RP MYIG T + LHHL E++DNA+DE +AGY + Sbjct: 2 NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V + +G +TV DNGRGIP + HP +S E++LT LHAGGKFDN++Y++SGGLHG Sbjct: 62 VQVIIHLDGSVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS L + + R + +Q + +G+P +PLE + + RGT+ITF PD +IF Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETKR-RGTKITFFPDGEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F L K + A+L+ V+ ++ + +F++ GG++++++ Sbjct: 180 ET-TEFSFDVLSKRLRELAFLNAGVRIKIHDER-------TEKDHDFFYEGGIRSFVEYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N++L++ E + EK G +E A+ + + ++ S+ N I T EGGTH G + Sbjct: 232 NKNKNLVNPEPIYIRGEKSGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFK 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +LTR + YA + + I DDL ++SV I +P+F GQTKTKL + + + Sbjct: 289 ASLTRTMNTYATANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE + + YL +NP A K+LE I+ + R RK RE RK A+ LPGK Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q+ Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ ALG + + LRY ++I+MTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 IRTLISALGTSIGKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 L++ PPL++I +G K Y +E Q L E Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQAYLLEEGTE 564 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + IL F + K + I R+KGLGEM QL ET M R LL+V+I + ++ Sbjct: 712 EDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV----AAEE 767 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 768 IFTVLMGDQVEPRRDFIEQNALNVSNLD 795 >gi|190889652|ref|YP_001976194.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652] gi|190694931|gb|ACE89016.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652] gi|327191183|gb|EGE58226.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512] Length = 811 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 236/577 (40%), Positives = 342/577 (59%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+++ VSL+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADIVTVSLNPDGSVTVTDNGRGIPTDIHS-GEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + + R I F+ G+ +PL+ + GT ++F Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDATGTEVSF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F FD L + A+L+ V+ S + K +EE + GGL Sbjct: 181 MPSSETFT-MTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIK-----QEEMRYDGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + ++ + + + + EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVAYLDRAKKPLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+ + K +++ +D +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VE+ + + + ++P EA L+ V+E + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +LIE+ HL++ PPL+++ +G Y DE+ ++ L Sbjct: 532 ELIERGHLYIAQPPLYKVARGKSVQYLKDEKALEEYL 568 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V++ D Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQ+ A + ++ Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810 >gi|26986758|ref|NP_742183.1| DNA gyrase subunit B [Pseudomonas putida KT2440] gi|148545263|ref|YP_001265365.1| DNA gyrase subunit B [Pseudomonas putida F1] gi|24981349|gb|AAN65647.1|AE016191_4 DNA gyrase, subunit B [Pseudomonas putida KT2440] gi|148509321|gb|ABQ76181.1| DNA gyrase subunit B [Pseudomonas putida F1] gi|313496421|gb|ADR57787.1| GyrB [Pseudomonas putida BIRD-1] Length = 806 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 346/569 (60%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++S++F ++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKRGKQEQYIKDDEAMEEYM 558 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|261391746|emb|CAX49196.1| DNA gyrase subunit B [Neisseria meningitidis 8013] Length = 796 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|212632928|ref|YP_002309453.1| DNA gyrase subunit B [Shewanella piezotolerans WP3] gi|212554412|gb|ACJ26866.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3] Length = 805 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 224/568 (39%), Positives = 347/568 (61%), Gaps = 18/568 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPVE HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHADGSVSVTDDGRGIPVEIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G P P++ + + GT I F P + F D Sbjct: 121 VSVVNALSHKLQLTIRRDGKVYEQFYTMGEPNEPIKPVGEATS-TGTVIRFWPSEETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 VL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVDYLNV 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ E+F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKEVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 289 Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMEREGFNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + YL+++P EA ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601 + PPL+++ +G + Y D+ + L Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYL 557 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 D + L+ K I R+KGLGEM QL ET MD R +L+V I + Sbjct: 714 TKDVSSFVEALDWLMSESKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG 773 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 774 ----ADQLFTCLMGDQVEPRRDFIESNALNVANLD 804 >gi|89069843|ref|ZP_01157178.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516] gi|89044644|gb|EAR50760.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516] Length = 805 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + ++Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 AEPERIPEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADHVHVKIHADSSVSVSDNGRGIPVDIH-QGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L + V R +F G + L+ + GT + F Sbjct: 121 LHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + +D L K + A+L+ V+ D+ P E ++ GG+K ++ Sbjct: 181 DTFSNL-DYDFHTLEKRLRELAFLNSGVRIILEDDR-----PAEPLHVELFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + ++S + E + + TVE A+ W + E+ + N I +GGTH + Sbjct: 235 KYLDRSKSAMLPEPIHVEGMRDDI---TVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMA 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + KYA + + ++ DD+ +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRAALTRTVTKYATESGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP +A ++ ++E ++ R RK RE RKTA+ L Sbjct: 352 EVRPAVESLVSEKLAEWFEENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPL+GKILNV A +++ Sbjct: 412 AGKLKDCSEKDPTQTEVFLVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFF+++M LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQLIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 H+++ PPL+++++G VY D+ + L E G Sbjct: 532 NGHIYIAQPPLYKVSRGRSEVYLKDQAAMDEYLIEQGVDG 571 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+ + + R+KGLGEM QL ET +D + RT L+V+I+ + D Sbjct: 723 LLQAILEEGERGLTLQRYKGLGEMNPEQLWETTLDPDARTFLQVKIDDVT----EADDLF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804 >gi|323525276|ref|YP_004227429.1| DNA topoisomerase [Burkholderia sp. CCGE1001] gi|323382278|gb|ADX54369.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1001] Length = 661 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 242/674 (35%), Positives = 359/674 (53%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R + + F+ G PLE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFAHGDVAKPLEVRAAAKGDKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 DPK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WADPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLVNEK-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL + L+ + E+ W +AW EE P SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTDIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G + Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRE 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|194290253|ref|YP_002006160.1| DNA topoisomerase iv subunit b [Cupriavidus taiwanensis LMG 19424] gi|193224088|emb|CAQ70097.1| DNA topoisomerase IV, subunit B [Cupriavidus taiwanensis LMG 19424] Length = 663 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 244/668 (36%), Positives = 347/668 (51%), Gaps = 34/668 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSIR+L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ + I Sbjct: 3 SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGHGSEIL 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155 V+L +G L+V D+GRGIPV HP+ +EI+ T LHA K Y SGGLH Sbjct: 60 VTLHRDGSLSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS +L VTV R + FS G P K E+ K GTR+ PD Sbjct: 119 GVGVSVTNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDA 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267 + D A A L ++ +SKA L VK +K + ++ + G Sbjct: 179 -RYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQG 237 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327 + E + G+ + A + P SY N I T G Sbjct: 238 SGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAG 296 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F GQ K + Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L S DA R V R + +L + KL E VI +++ R R ++ E + + + Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN ++ Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N ++ D+ A+G E D LRY K+ I++DADVDGAHI LLLT F++ Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534 Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 LIE ++++ PPLFR+ +G K +YA DE + I ++ K G + +IS Sbjct: 535 PKLIETGNVYVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQIS 594 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM A QL ET M+ + R LL V + L T + +N LMG +A +R ++ Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVTL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652 Query: 675 QERASFID 682 +E+ + ++ Sbjct: 653 EEKGNEVE 660 >gi|325205300|gb|ADZ00753.1| DNA gyrase, B subunit [Neisseria meningitidis M04-240196] Length = 796 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|294787816|ref|ZP_06753060.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453] gi|294484109|gb|EFG31792.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453] Length = 812 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 234/584 (40%), Positives = 333/584 (57%), Gaps = 31/584 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQIQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ + +T+ DNGRGIP HPK +S E+I+T LHAGGKFDN++Y++SGGLH Sbjct: 62 NITVAINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPK 214 GVG+SVVNALSD L +T+ R+ F RG + PL+ + NK GTR+ F + Sbjct: 121 GVGVSVVNALSDWLRLTIWREGKEHFVAFKRGETVEPLKVVGECDPNKHGTRVQFLASEE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 FG + L K + ++L+ VK ++ + E F GG+ +++ Sbjct: 181 TFGTV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKYENFAESGGVTGFVE 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++ + +IF EK G TVE A+ W + + + N I +GGTH + Sbjct: 233 YTRGSKKPLHDKIFYALGEKDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289 Query: 334 LRVALTRGIKKYAELTQNKRAISI------ISDDLMISAVGILSVFIREPEFAGQTKTKL 387 LR +TR I +Y E + + S DD+ ILSV + +P+F+ QTK KL Sbjct: 290 LRQVMTRTINQYIEANEIIKKSSKNNKLDVSGDDMREGLTCILSVKLPDPKFSSQTKDKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 VS + + L + ++L +NP A + + +I + R RK RE RK Sbjct: 350 VSSEIAPVISEVLNEHLKNFLEENPKIAKIITDKIILAATAREAARKARENIQRKNVFEG 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L LPGKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K Sbjct: 410 LNLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 469 Query: 507 IRNNQQIMDLVQALGCR---------TRSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 + +NQ+I L ALG + E LRY +VIIMTDADVDGAHI +LLLT Sbjct: 470 VLDNQEISALFAALGISFGKKTDDDSNTPKINLEKLRYHRVIIMTDADVDGAHIRTLLLT 529 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 FFY++M +L+E+ ++++ PPL++ G Y DE+ K + L Sbjct: 530 FFYRQMPELLERGYVYIAQPPLYKAKHGKTERYLKDEQEKDEFL 573 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 17/181 (9%) Query: 507 IRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD-VDGAHIASLLLTFFYQEMYD 565 NQ+I A L +I D VD LL T ++ Sbjct: 648 SLKNQEIALEYVAGNDDNHFIKMTRQLHGNVMISYLDQKFVDSKAYQILLKTA--EQQRG 705 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 L++ L +G A + ++ L+ + + I R+KGLGEM Sbjct: 706 LLDAAGAELF--------KGDGD--AQTVKSFEEALDILLAGAQKGMMIQRYKGLGEMNP 755 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET M+ + R LL+V I + + LMG + + R FI+ A ++ Sbjct: 756 EQLWETTMNPDVRRLLKVRIEDAI----AADKTFVTLMGDEVEPRRAFIENNALIAQNID 811 Query: 686 T 686 Sbjct: 812 A 812 >gi|255020212|ref|ZP_05292281.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756] gi|254970354|gb|EET27847.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756] Length = 801 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 226/570 (39%), Positives = 348/570 (61%), Gaps = 18/570 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 ++ YD++SI++L GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I V Sbjct: 2 TEKYDSTSIQVLRGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDRILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V DNGRGIPV+ H + +S E+ILT LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDESVSVRDNGRGIPVDIHAE-EGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ LH+ + R ++Q++ G PL+PL++ + KRGT I F+P ++F D Sbjct: 121 SVVNALSEYLHLQIDRDGYRWTQEYRDGEPLAPLQR-GEASRKRGTEIRFKPSAQVFADT 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + + A+L+ V ++ +E F++ GG++ +++ + Sbjct: 180 H-FHFEILARRLRELAFLNSGVHIQLRDERG------EGREEVFHYEGGIRAFVEHLNRS 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I + + + G VE A+ W E + + N I +GGTH +G R AL Sbjct: 233 KNAIHPTVISLSGARDGVM---VEAALQWNEGYNESVLCFTNNIPQADGGTHLAGFRAAL 289 Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + +Y E K +++ DD +LSV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNQYMEREGILAKAKVAVSGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E ++ + +L ++P EA + V+E + R R+ RE RK A+ LPGKLAD Sbjct: 350 EASMAEALGIFLDEHPREAQAIAAKVVEAARAREAARRARELTRRKGALDIANLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV A +K+ ++ +I Sbjct: 410 CQEKDPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDKMLSSDEIGT 469 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + + LRY +VIIMTDADVDG+HI +LLLTFFY++M +L+ + H+++ Sbjct: 470 LITALGTGIGQEDFDVTKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELVARGHVYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 PPL+++ +G Y D++ L E Sbjct: 530 AQPPLYKVKKGKDERYIKDDQELATYLREL 559 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%) Query: 581 RITQGTKSVYAHDE-EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 RI +G KS E H ++ ++ + +EI R+KGLGEM QL ET M+A+ R Sbjct: 703 RIHRGDKS----SELRHFRQGMQWLLAQARQGVEIQRYKGLGEMNPEQLWETTMNADNRR 758 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+RV++ + + + LMG + R +FI+E A F+ + Sbjct: 759 LVRVDVEDAI----AADEVFSMLMGDAVEPRRRFIEENARFVSRLD 800 >gi|253698660|ref|YP_003019849.1| DNA gyrase B subunit [Geobacter sp. M21] gi|251773510|gb|ACT16091.1| DNA gyrase, B subunit [Geobacter sp. M21] Length = 796 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 240/576 (41%), Positives = 350/576 (60%), Gaps = 18/576 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N +Y A I+ILEGLE VR RP MYIG T + LHHL E++DNA+DE +AGY + Sbjct: 2 NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQGLHHLVYELVDNAIDEALAGYCDA 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 ++V + +G +TV DNGRGIP + HP +S E++LT LHAGGKFDNS+Y++SGGLHG Sbjct: 62 VQVIIHLDGSVTVEDNGRGIPTDMHP-TEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG SVVNALS L + + R +++Q + +G+P +PLE + + RGT+ITF PD +IF Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVYTQTYRKGVPQAPLEITGETKR-RGTKITFFPDGEIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 F L K + A+L+ V+ ++ + +F++ GG++++++ Sbjct: 180 ET-TEFSFDVLSKRLRELAFLNAGVRIKIHDER-------FDKDHDFFYEGGIRSFVEYL 231 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 +N++L++ E + EK G +E A+ + + ++ S+ N I T EGGTH G + Sbjct: 232 NKNKNLVNPEPIYIRGEKSGV---DIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFK 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + YA + + I +DL ++SV I +P+F GQTKTKL + + + Sbjct: 289 AALTRTMNTYANTNNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE + + YL +NP A K+LE I+ + R RK RE RK A+ LPGK Sbjct: 349 GYVETLMNEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q+ Sbjct: 409 LADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ ALG + + LRY ++I+MTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 IRTLISALGTSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 L++ PPL++I +G K Y +E Q L E Sbjct: 529 LYIAQPPLYKIKRGRKEQYLKNEAALQAYLLEEGTE 564 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + IL F + K + I R+KGLGEM QL ET M R LL+V+I + ++ Sbjct: 712 EDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAV----AAEE 767 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI++ A + ++ Sbjct: 768 IFTVLMGDQVEPRRDFIEQNALNVSNLD 795 >gi|115380006|ref|ZP_01467056.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1] gi|115362985|gb|EAU62170.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1] Length = 616 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 251/627 (40%), Positives = 357/627 (56%), Gaps = 17/627 (2%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNG-FLTVVDNGRGIPVENHP 122 MYIGGTD HHL E++DN++DEVI G+A+ +EV+L + +TVVDNGRGIPV+ P Sbjct: 1 MYIGGTDGTGYHHLLWEILDNSVDEVINGHASTVEVTLHKDSRTITVVDNGRGIPVDIMP 60 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 K K +E+ILTTLHAGGKF+ Y SGGLHGVG SVVNAL+ +L V + R+ Q Sbjct: 61 KL-KKPAVEVILTTLHAGGKFEQGNYIHSGGLHGVGSSVVNALARKLLVEIKREGKRHVQ 119 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 ++RG +PL+ + R GT ITF PDP+IFG+K FD + + ++K+YL + Sbjct: 120 HYARGKATTPLKVEGPARG-TGTSITFEPDPEIFGEKLKFDPELIRERLEAKSYLHKGMT 178 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 W E + GG+ YL + R+ + Sbjct: 179 VVWKD-----ETASPATSVTYKHDGGIAEYLNKVVAERNKPVVPPGGAVFYHARDSEVRL 233 Query: 303 EWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISD 360 E A+ W E + I SY N I T +GGTHE+GLR A+ + ++ Y E + +++ ++ Sbjct: 234 EAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRGAVVKAVRNYIETHNLSPKGVTLTAE 293 Query: 361 DLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLE 420 D+ ILS ++ EP+F GQTK +L + + V+ LR + +L N + Sbjct: 294 DIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQVDGVLRPALEKWLNDNKSIGEAAVA 353 Query: 421 WVIERSEERLRRRKQRE--VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 +I + R R + + +L LPGKLADCS +ELF+VEGDSAGGSA Sbjct: 354 RIILAARAREASRAASQAVSRKTAVSHRLNLPGKLADCSSTEPSTSELFLVEGDSAGGSA 413 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKV 538 KQ R+R QA+LPLRGK+LN A ++K+ N+++ D+V ALGC S + LRY ++ Sbjct: 414 KQGRDRRTQAILPLRGKVLNAEQASTDKVATNKELQDIVSALGCGIGSDFDLSKLRYGRI 473 Query: 539 IIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 ++ DAD DG HIA+LLLTFFY+ + LIE + + PPL+++ G ++ +A DE + Sbjct: 474 FLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVHIAQPPLYKVEIGKETYWALDEADRD 533 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +I+ E K G K I RFKGLGEM A +LK T +D +KR L+V I+ L +T Sbjct: 534 RIVRE-KAKGNAKPNIMRFKGLGEMTADELKTTTLDPHKRMSLQVTIDNPL----ETDRV 588 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 IN L+G RFKFI ERA + D+ Sbjct: 589 INDLLGKDVSARFKFIMERAGEVQDLD 615 >gi|325145282|gb|EGC67560.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240013] Length = 796 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|86139413|ref|ZP_01057982.1| DNA gyrase subunit B [Roseobacter sp. MED193] gi|85823916|gb|EAQ44122.1| DNA gyrase subunit B [Roseobacter sp. MED193] Length = 805 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 222/571 (38%), Positives = 334/571 (58%), Gaps = 16/571 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N+ + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +A +A+ Sbjct: 4 NEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 HVRVTIHADSSVSVYDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R+ +F RG L+ ++ GT + F Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFMASTDT 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L K + A+L+ VK + ++ + E ++ GG+K +++ Sbjct: 183 FSNL-EYSFETLEKRLRELAFLNSGVKIILADER-----PAERLESELFYEGGVKEFVKY 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + EK VE A+ W + + + N I +GGTH +G Sbjct: 237 LDRSKTPVMDSPVYITGEKDDI---GVEVAMWWNDSYHESVLPFTNNIPQRDGGTHLAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + + + +NP +A +++ ++E + R RK RE RKTA+ L G Sbjct: 354 RPVVESLVNEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ +Q Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLRGKILNVERARFDRMLGSQ 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 474 EIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPL+++ +G VY D+ L Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQAALDDYL 564 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + D Sbjct: 722 DLLKAIMEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDLVG----ADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQKNALSVENLD 804 >gi|325143186|gb|EGC65528.1| DNA gyrase, B subunit [Neisseria meningitidis 961-5945] gi|325197495|gb|ADY92951.1| DNA gyrase, B subunit [Neisseria meningitidis G2136] Length = 796 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|24371611|ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1] gi|24345361|gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1] Length = 805 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 223/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R + Q ++ G+P +P+++ GT I F P + F + Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEQTFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E+ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQ 571 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804 >gi|308447343|ref|XP_003087405.1| hypothetical protein CRE_12456 [Caenorhabditis remanei] gi|308256863|gb|EFP00816.1| hypothetical protein CRE_12456 [Caenorhabditis remanei] Length = 822 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 341/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSEDQIASQTEPTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEILVTIHEDESVSVADNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R I Q++ G P+ PL+ V GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDV-ETTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E F + Sbjct: 180 IVRFWPSTETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVALE-------HVFDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ + ++ ++ + G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINQGKTHLNEIFHFTTQAENGI---GVEVALQWNDTYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ ++++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + L+E+ +L +G + + + ++ + + + I R+KGL Sbjct: 714 KSWFTLLEEG-AYL--------QKGERKI---NVSTFHQVWQHILTDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFACLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|209693646|ref|YP_002261574.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238] gi|208007597|emb|CAQ77697.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238] Length = 805 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 233/566 (41%), Positives = 346/566 (61%), Gaps = 16/566 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIIV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHEDDSVSVSDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+++ +T+ R+ IF Q + G+P +PL + GT+I F P + F + Sbjct: 121 SVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQTFANI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +E + + F F GG+K ++ N Sbjct: 180 -EFVYDILAKRLRELSFLNSGVSIRLQDMRE------EDKSDHFMFEGGIKAFVTHLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +IF +E+K VE A+ W + I Y N I +GG H SG R AL Sbjct: 233 KTPVHQKIFYFDSERK-EDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSAL 291 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + + K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 292 TRTLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L +NP EA + +I+ + R RK R RK A+ LPGKLAD Sbjct: 352 ESAMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 471 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ Sbjct: 472 LITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G + Y DEE + Sbjct: 532 AQPPLYKVKKGKQEQYIKDEEAMAEY 557 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + + K + + + R+KGLGEM QL ET MD + R +++V IN + Sbjct: 720 LDEAIAWLIKDSRRGVYLQRYKGLGEMNPEQLWETTMDPDSRRMMQVTINDAV----SAD 775 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A + ++ Sbjct: 776 ELFTTLMGDHVEPRRNFIEENALRVANLD 804 >gi|85375173|ref|YP_459235.1| type IIA topoisomeraseb subunit [Erythrobacter litoralis HTCC2594] gi|84788256|gb|ABC64438.1| type IIA topoisomeraseB subunit [Erythrobacter litoralis HTCC2594] Length = 847 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 227/604 (37%), Positives = 353/604 (58%), Gaps = 29/604 (4%) Query: 26 SGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82 S E PD+P + N Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV Sbjct: 2 SQETPDTPEAIPEKVRQNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVS 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DNA+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K S E+I+T LHAGGK Sbjct: 62 DNAIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGK 120 Query: 143 F----DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198 F D++ Y++SGGLHGVG+SVVNALS+ L + + R +F G + LE Sbjct: 121 FENTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGD 180 Query: 199 VRN----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 K+GTR+TF F + FD +L + A+L+ V+ Sbjct: 181 APRVDQNPDDNGFKKGTRVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDK 240 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + + + ++ GG+ +++ N+ + +E + EK G ++ A+ W Sbjct: 241 RHEDVREH-----DMFYEGGIAAFVKYLDRNKQPLVAEPISVSAEKDGI---GIDVALQW 292 Query: 309 CE-ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + + ++ N I +GGTH + R ALTR + YA + K +S+ +D+ Sbjct: 293 NDSYYENVLTFTNNIPQRDGGTHLAAFRSALTRTLNNYATASGLLKKEKVSLSGEDMREG 352 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV + +P+F QTK KLVS + ++ +E+ + + +L +NP +A +++ +I+ Sbjct: 353 LTAIVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDA 412 Query: 426 SEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 + R RK RE++RK A+ LPGKLADC + +ELF+VEGDSAGGSAKQ R+R Sbjct: 413 AAAREAARKAREMSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRK 472 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDAD 545 QA+LPL+GKILNV A ++I +++++ L+QA+G R ++ E LRY K++IMTDAD Sbjct: 473 TQAILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDAD 532 Query: 546 VDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 VDGAHI +LLLTFF+++M ++++ HLF+ PPL+++++G VY D+ + L Sbjct: 533 VDGAHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGG 592 Query: 606 KHGK 609 G+ Sbjct: 593 LQGR 596 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ G+ + I+R+KGLGEM A QL ET +D R LL+V++ T + Sbjct: 764 ELLDAVLAAGRKGLSIARYKGLGEMNAEQLWETTLDPEARILLQVKVED----ADVTDEI 819 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ+ A + ++ Sbjct: 820 FTRLMGDVVEPRREFIQDNALNVANLD 846 >gi|152984068|ref|YP_001345400.1| DNA gyrase subunit B [Pseudomonas aeruginosa PA7] gi|150959226|gb|ABR81251.1| DNA gyrase, B subunit [Pseudomonas aeruginosa PA7] Length = 806 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 232/570 (40%), Positives = 349/570 (61%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S ++ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL +T+ R N ++ Q + G+P PL + + + GT + F+P P+ F Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ ++E F + GGLK +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+S ++ + E+ G VE A+ W + I + N I +GGTH +G R Sbjct: 232 TNKSAVNQVFHFNVQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q+ Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D++ ++ + Sbjct: 529 VYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%) Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + +G + + A + L+ G + I R+KGLGEM QL ET MD N R Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 763 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V I + N LMG + R FI+ A + ++ Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|300114694|ref|YP_003761269.1| DNA topoisomerase IV subunit B [Nitrosococcus watsonii C-113] gi|299540631|gb|ADJ28948.1| DNA topoisomerase IV, B subunit [Nitrosococcus watsonii C-113] Length = 628 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 246/624 (39%), Positives = 351/624 (56%), Gaps = 23/624 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 S NY+A++I +L GL+PVR RPGMY TD + +HL EVIDN++DE IAG+A I+V Sbjct: 2 SGNYNAAAIEVLTGLDPVRKRPGMY---TDTQRPNHLAQEVIDNSVDEAIAGFATHIDVV 58 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G LTV D+GRG+PV+ HP+ +E+IL+ LHAGGKF + +Y +GGLHGVG+S Sbjct: 59 LQSDGSLTVRDDGRGMPVDLHPE-ERLPGIEVILSRLHAGGKFSSKSYRFAGGLHGVGVS 117 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDK 219 VVNALS L V V R + + F+ G +S L KV + GT + F PDP F D Sbjct: 118 VVNALSSRLEVWVRRDSCEYHIAFANGERVSALRAINKVGKRSTGTVLRFWPDPA-FFDT 176 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F ARL + ++KA L ++ +S E + + GL YL+ +L Sbjct: 177 PKFSVARLKHILRAKAVLCPGLQVTFSD-------VVTGEAANWRYQEGLLAYLRDELGA 229 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI--TSYCNTILTDEGGTHESGLRVA 337 S + FTG+ + V WA W E E+ SY N I T +GGTH +GLR Sbjct: 230 LSYLPDPPFTGEMQGNTE---EVCWAFTWLPEGGEVVAESYVNLIPTPQGGTHVNGLRGG 286 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + ++++ E + + + DD+ +LSV + +P+F+GQTK +L S + V Sbjct: 287 VLEAVREFCEFRNLLPKGVKLAPDDVWERVSYVLSVKLLDPQFSGQTKERLSSRECASFV 346 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 ++D F +L Q+ + E I+ ++ RLR + ++V RK LPGKLADC Sbjct: 347 AGVVKDSFSLWLNQHVAIGEAIAELAIDNAQRRLR--QAKKVVRKRIQAGPALPGKLADC 404 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + TELF+VEGDSAGGSAKQ R+R QA++PLRGKILN S ++ +Q++ ++ Sbjct: 405 TSQEVSLTELFLVEGDSAGGSAKQGRDREFQAIMPLRGKILNTWEIDSAQVLASQEVHNI 464 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG S + LRY K+ I+ DAD DGAHIA+LL F + L+E H+++ Sbjct: 465 AVALGVDPGSDKL-DSLRYGKICILADADSDGAHIAALLSALFLRHFRPLVEAGHIYVAM 523 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI G + YA D +Q +L+ KGKI I RFKGLGEM QL+ET M Sbjct: 524 PPLYRIDVGKRVFYALDGAERQGVLDRIAAEKIKGKINIQRFKGLGEMNPMQLRETTMAP 583 Query: 636 NKRTLLRVEINKDLNSLKDTQDSI 659 R L+R+ + + + + Sbjct: 584 ETRRLVRLTVTPEDDPEPLLDRLL 607 >gi|15595202|ref|NP_064724.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAO1] gi|107098998|ref|ZP_01362916.1| hypothetical protein PaerPA_01000004 [Pseudomonas aeruginosa PACS2] gi|116053724|ref|YP_788159.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218888750|ref|YP_002437614.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58] gi|296386476|ref|ZP_06875975.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAb1] gi|313111474|ref|ZP_07797275.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016] gi|81857426|sp|Q9I7C2|GYRB_PSEAE RecName: Full=DNA gyrase subunit B gi|9945822|gb|AAG03394.1|AE004440_4 DNA gyrase subunit B [Pseudomonas aeruginosa PAO1] gi|115588945|gb|ABJ14960.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218768973|emb|CAW24731.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58] gi|310883777|gb|EFQ42371.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016] Length = 806 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 230/570 (40%), Positives = 349/570 (61%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S ++ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL +T+ R N ++ Q + G+P PL + + + GT + F+P P+ F Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ ++E F + GGLK +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ ++ + E+ G VE A+ W + + + N I +GGTH +G R Sbjct: 232 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q+ Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D++ ++ + Sbjct: 529 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%) Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + +G + + A + L+ G + I R+KGLGEM QL ET MD N R Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 763 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V I + N LMG + R FI+ A + ++ Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|88798536|ref|ZP_01114120.1| DNA gyrase subunit B [Reinekea sp. MED297] gi|88778636|gb|EAR09827.1| DNA gyrase subunit B [Reinekea sp. MED297] Length = 804 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 234/579 (40%), Positives = 341/579 (58%), Gaps = 20/579 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SDNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEITV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ N ++V DNGRGIP E H + +S E+ILT LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHPNESVSVEDNGRGIPTEIHEE-EGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS EL +T+ R + Q +S G+P+ PL+ + GT+ITF P F + Sbjct: 121 SVVNALSAELKLTIRRGGKVHEQDYSHGVPVEPLKVVGDA-DTTGTKITFLPSSGTFANI 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + L K + ++L+ V ++ E + F++ GGLK ++ N Sbjct: 180 -KYSYDILAKRLRELSFLNSGVAIRLKDERTAQE-------DYFHYEGGLKAFVTYLNRN 231 Query: 280 RSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 + ++ + E+ G VE A+ W + I SY N I +GGTH +G R A Sbjct: 232 KQTLNEVFHFSFEREEDGI---GVEVALQWNDSYQENIFSYTNNIPQRDGGTHLAGFRAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K+ ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRTLNSYIQQENLLKKQKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE + F YL+++P EA ++ +I+ + R RK RK A+ LPGKLA Sbjct: 349 VEQEMSRVFSEYLIEHPNEAKVVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAK R+R QA+LPL+GKILNV A +K+ + ++ Sbjct: 409 DCQEKDPALSELYLVEGDSAGGSAKMGRDRRTQAILPLKGKILNVEKARFDKMLQSAEVG 468 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC + E LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE H++ Sbjct: 469 TLITALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGHVY 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 + PPLF+I +G + Y DE + L G Sbjct: 529 IAQPPLFKIKKGKQETYIKDEPALESYLLSQALDGTSLY 567 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I + K +++++ K +I R+KGLGEM QL ET MD R +L Sbjct: 707 IQRNDKKHEISS---FEEVIQWLMKEASRGYQIQRYKGLGEMNPDQLWETTMDPEARRML 763 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R +FI+ A + ++ Sbjct: 764 QVTIEDAI----AADQIFTTLMGDDVEPRRQFIESNALLVSNLD 803 >gi|302524596|ref|ZP_07276938.1| DNA gyrase, B subunit [Streptomyces sp. AA4] gi|302433491|gb|EFL05307.1| DNA gyrase, B subunit [Streptomyces sp. AA4] Length = 697 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 223/686 (32%), Positives = 332/686 (48%), Gaps = 52/686 (7%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 +A Y A + LEGLE VR RPGMYIG TD + ++HLFSEV+DN+ DE +AG+A I Sbjct: 16 TAETLYGADDLTHLEGLEAVRKRPGMYIGSTDSRGINHLFSEVVDNSTDEGVAGHATRIV 75 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V+L +G + V D+GRGIP H K S +E++LT LHAGGKF S Y+ SGGLHGVG Sbjct: 76 VTLHADGSVQVDDDGRGIPTGVHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVG 134 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------------NK 202 S VNALS VTV + + F+ G+P K + + Sbjct: 135 ASAVNALSHRFDVTVKQNGKVHQMSFAHGVPGVFDGPGPKAKFTRRSGLNLVGKMKRGER 194 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT I + D + F A D + ++ A+L V E +E Sbjct: 195 SGTSIRYWYDARYFETGAALDVEGVRTKLRNTAFLVPGVTYVLRTTFE-----DTINEET 249 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTE---------------KKGTHRGTVEWAIA 307 F+FP GL + + E VE A+ Sbjct: 250 FHFPNGLADMVDFLAPDSEKPVCGTLMITGEGTYKENAADANGVMQSNVERHAEVEVALR 309 Query: 308 WCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKK---YAELTQNKRAISIISDDLM 363 W + NTI GGTH G A+TR ++ + ++D++ Sbjct: 310 WGTGYERTVECFTNTIRNVHGGTHRRGFDRAVTRALQDAIGKTRGLLKAKEDPPTTEDVL 369 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEW 421 ++ V + EP+F QTK +L + R ++ + + + EA +L+ Sbjct: 370 EGMTAVIHVRLPEPQFTSQTKDELSTAGITRVLQGIVDKQVRAWTEDRKTKSEAKIVLQK 429 Query: 422 VIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 V++ + RL +++Q++ RKTA+ +P KL DC +ELF+VEGDSA GSA+ Sbjct: 430 VVDAARVRLTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVSRSELFLVEGDSALGSARM 489 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVII 540 AR QA+LPLRGKILNV A N +I +VQ LG T + +RY +VI+ Sbjct: 490 ARVSEYQALLPLRGKILNVQKASLGDTLKNAEIASIVQVLGAGTGRTFDLSTMRYGRVIL 549 Query: 541 MTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTKSVYAHDEEHK 597 M DADVDG+HI +LL+T F + M +IE L+ PPL +IT +G+++++ + Sbjct: 550 MADADVDGSHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKITTKGRGSETIFTFTQREM 609 Query: 598 QKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + E + GK + + RFKGLGEM A +L ET M+ R++ R+ + + + Sbjct: 610 EQKVAELEAAGKQVVTPVPRFKGLGEMDADELWETTMNPATRSVRRITLEDVEAAELALE 669 Query: 657 DSINKLMGTKADERFKFIQERASFID 682 MG K + R ++ E + +D Sbjct: 670 LL----MGEKVEPRRNWLVESSDRVD 691 >gi|221068512|ref|ZP_03544617.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1] gi|220713535|gb|EED68903.1| DNA topoisomerase (ATP-hydrolyzing) [Comamonas testosteroni KF-1] Length = 656 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 238/666 (35%), Positives = 345/666 (51%), Gaps = 38/666 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S+ Y SIR+L+GLEPV+ RPGMY T H+ EVIDNA DE +AGY I+ Sbjct: 4 KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155 ++ +G +V D+GRGIP HP+ +E++ T LHAGGKFD Y SGGLH Sbjct: 61 FTIHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG+SV NAL+ L V V R + + FS G + PL+ + K+GT + PD Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L+ + +SKA L V +K + + F GGL+ YL Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQRWQFKGGLRDYL 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329 L +I G +K E A + P SY N I T GGT Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291 Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 H+SGLR L + +K + ++ + + ++ DD+ A +L+ + +P+F GQ K +L Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 S DA R V +R + +L ++ KL E I+ ++ R + ++ E + + + L Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 PGKL DC E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G E D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529 Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617 LIE H+ + PPLFR+ +G K VYA D I+E+ K G + K ++SRF Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676 KGLGEM A QL ET ++ + R LL V+ ++ + KLMG +A R + ++ Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--MDFAQSEAVVTKLMGKGEAAARRELMEL 647 Query: 677 RASFID 682 ++ Sbjct: 648 HGDAVE 653 >gi|121893|sp|P13364|GYRB_PSEPU RecName: Full=DNA gyrase subunit B gi|45694|emb|CAA38447.1| unnamed protein product [Pseudomonas putida] Length = 806 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 348/569 (61%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ + GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++S++F +++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNSQVFHFSVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R +FI+ A + ++ Sbjct: 776 DQIFNTLMGDAVEPRREFIESNALSVSNLD 805 >gi|325202956|gb|ADY98410.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240149] gi|325207246|gb|ADZ02698.1| DNA gyrase, B subunit [Neisseria meningitidis NZ-05/33] Length = 796 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|187923202|ref|YP_001894844.1| DNA topoisomerase IV subunit B [Burkholderia phytofirmans PsJN] gi|187714396|gb|ACD15620.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia phytofirmans PsJN] Length = 661 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 241/674 (35%), Positives = 356/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R I F+ G LE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKIAELSFANGDVAKELEVRPAAKGDKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQTWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + YL + L+ + E+ W +AW EE + SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRASEETFAEGEGAAWVVAWSEEGTLMRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFARPALELWLNQHVELGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEIGRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + T + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLSPVAL--GALDYDATVARMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|254237753|ref|ZP_04931076.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719] gi|126169684|gb|EAZ55195.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719] Length = 806 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/570 (40%), Positives = 348/570 (61%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S ++ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL +T+ R N ++ Q + G+P PL + + + GT + F+P P+ F Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ ++E F + GGLK +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ ++ + E+ G VE A+ W + + + N I +GGTH +G R Sbjct: 232 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAK RNR QA+LPL+GKILNV A +K+ ++Q+ Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKHGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D++ ++ + Sbjct: 529 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 558 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 11/106 (10%) Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + +G + + A + L+ G + I R+KGLGEM A QL ET MD N R Sbjct: 709 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNAEQLWETTMDPNVRR 763 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V I + N LMG + R FI+ A + ++ Sbjct: 764 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|163738140|ref|ZP_02145556.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107] gi|163743742|ref|ZP_02151116.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10] gi|161383003|gb|EDQ07398.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10] gi|161388756|gb|EDQ13109.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107] Length = 805 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 335/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N+ A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADRVVVKIHADSSVSVNDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F RG L+ ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L K + A+L+ V+ ++ + E ++ GG+K ++ Sbjct: 181 DTFSNL-EYLFETLEKRLRELAFLNSGVRIILIDER-----PAERLEVELFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++S + ++ VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKSPVMEAPIYITGDRDEI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+ + + + +NP +A +++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPVVESLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ + L G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALDEYLINQGVDG 571 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + G+ + + R+KGLGEM QL ET +D + RTLL+V + + + D Sbjct: 723 LLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MVEADDLF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQKNALSVENLD 804 >gi|56695080|ref|YP_165427.1| DNA gyrase subunit B [Ruegeria pomeroyi DSS-3] gi|56676817|gb|AAV93483.1| DNA gyrase, B subunit [Ruegeria pomeroyi DSS-3] Length = 805 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 222/570 (38%), Positives = 330/570 (57%), Gaps = 16/570 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 5 EQPGNEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADH 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + V + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHG Sbjct: 65 VTVKIHADSSVSVADNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALSD L + + R +F RG + L + ++ GT + F F Sbjct: 124 VGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLASTTTF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + L K + A+L+ V+ ++ ++ GG++ +++ Sbjct: 184 SNL-DYVFETLEKRLRELAFLNSGVRIILIDERPAERIETE-----LFYEGGVREFVKYL 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 ++S + K E+ VE A+ W + + + N I +GGTH +G R Sbjct: 238 DRSKSPVMPAPIYFKGERDDI---GVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFR 294 Query: 336 VALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA+ + + I+ DD +LSV + +P+F+ QTK KLVS + + Sbjct: 295 GALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VEN + + + +NP A +++ +IE + R RK RE RKTA+ L GK Sbjct: 355 PAVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ +Q+ Sbjct: 415 LKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQE 474 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE + Sbjct: 475 IGNLVMALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGY 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 L++ PPL+++ +G VY D+ L Sbjct: 535 LYIAQPPLYKVARGKSEVYLKDQAALDDYL 564 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + + R+KGLGEM QL ET +D + RTLL+V +N + + D Sbjct: 722 TLLKAILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVND----MVEADDI 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDSVEPRREFIQQNALSVENLD 804 >gi|19909691|dbj|BAB87041.1| DNA gyrase subunit B [Halobacterium salinarum] Length = 575 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 224/588 (38%), Positives = 338/588 (57%), Gaps = 18/588 (3%) Query: 70 DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKST 129 D + LHHL EV+DN++DE +AGY + I+V+L +G ++V D+GRGIPV H ++ ++ Sbjct: 1 DARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEY-DRPA 59 Query: 130 LEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP 189 +E+ILT LHAGGKFD +Y++SGGLHGVG+SVVNALS+ L V V+R + ++F RG P Sbjct: 60 VEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEP 119 Query: 190 LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK 249 ++ L+ + GT I FRPD +IF +D + L + A+L+ V+ + ++ Sbjct: 120 VTDLQHVGD-SDDSGTLIRFRPDSEIFETT-AYDFSTLENRLRELAFLNSGVEITLTDER 177 Query: 250 EIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA-W 308 P + F + GG++ +++ E R+ + ++ + E G +VE A+ Sbjct: 178 -----GDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGI---SVEIAMQAS 229 Query: 309 CEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNK---RAISIISDDLMIS 365 + ++ N I T EGGTH +G + ALTR + YA ++ DD+ Sbjct: 230 EDVQSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREG 289 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 ++SV +P+F GQTKTKL + + + VE A+ D Y +NP A ++ +E Sbjct: 290 LTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEA 349 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 ++ R +K E RK+A+ LPGKLADC ELF+VEGDSAGGSAKQ RN Sbjct: 350 AKARKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNP 409 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPL GKILNV ++I + ++ ++ ALG ++ ++LRYE +I+MTDA Sbjct: 410 GFQAILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENIIMMTDA 469 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHI +LLLTFFY+ M L+E +++ PPL+RI + A E +++I+EE Sbjct: 470 DVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQ 529 Query: 605 KKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 ++ RFKGLGEM QL +T MD R L R+ + + Sbjct: 530 CNGNPT--QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAAD 575 >gi|325275335|ref|ZP_08141286.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51] gi|324099526|gb|EGB97421.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51] Length = 806 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 224/569 (39%), Positives = 347/569 (60%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ +++++F +++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNNQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKRGKQEQYIKDDEAMEEYM 558 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEALDWLMNESTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|325141053|gb|EGC63556.1| DNA gyrase, B subunit [Neisseria meningitidis CU385] Length = 796 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|114762139|ref|ZP_01441607.1| DNA gyrase subunit B [Pelagibaca bermudensis HTCC2601] gi|114545163|gb|EAU48166.1| DNA gyrase subunit B [Roseovarius sp. HTCC2601] Length = 805 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/580 (39%), Positives = 333/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 AEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ADFVRVKIHADNSVSVRDNGRGIPVDMHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L + + R KFS G + L ++GT + F Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFSHGETVEHLRVVGDAEGEQGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + F+ A L K + A+L+ V+ ++ P E ++ GG+K ++ Sbjct: 181 ETFSNL-DFEFATLEKRLRELAFLNSGVRIILEDER-----PAEPLHTELHYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHES 332 + ++ + E EK G VE A+ W + E+ + N I +GGTH + Sbjct: 235 KYLDRSKQPMMPEPIYMTGEKDGI---GVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + +YA + K +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTLTRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VEN + + + ++P EA ++ ++E + R RK RE RK + L Sbjct: 352 EVRPAVENLVNEKLTEWFEEHPNEAKMVVGKIVEAALAREAARKARELTRRKNPMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TELFIVEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K+I+MTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIDKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPLF++ +G VY D+ L + G Sbjct: 532 GGYLYIAQPPLFKVARGRSEVYVKDQAALDDYLIQQGVDG 571 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 723 LLEAILEEGEKGLSLQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDD----MTEADDIF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804 >gi|218767099|ref|YP_002341611.1| DNA gyrase subunit B [Neisseria meningitidis Z2491] gi|121051107|emb|CAM07377.1| DNA gyrase subunit B [Neisseria meningitidis Z2491] Length = 796 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|254670128|emb|CBA05114.1| DNA gyrase subunit B [Neisseria meningitidis alpha153] Length = 796 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|319761821|ref|YP_004125758.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans BC] gi|330826319|ref|YP_004389622.1| DNA topoisomerase [Alicycliphilus denitrificans K601] gi|317116382|gb|ADU98870.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans BC] gi|329311691|gb|AEB86106.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans K601] Length = 658 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 244/668 (36%), Positives = 349/668 (52%), Gaps = 38/668 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 S++ Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AGY Sbjct: 4 KPSSASAYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVLDNAADEALAGYGKK 60 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153 I+V+L +G ++V D+GRGIP HP+ +E++ T LHAGGKFD Y SGG Sbjct: 61 IKVTLHEDGSVSVEDDGRGIPFGLHPE-EGAPVVELVFTRLHAGGKFDKGQGGAYSFSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRP 211 LHGVG+SV NALS L V+ R+ I F+ G PL + +R GT + P Sbjct: 120 LHGVGVSVTNALSTRLEVSTHREGQIARLAFAAGDVAEPLLARPLAAGERRQGTTVRVWP 179 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D K F A L + +SKA L V +K ++ + + GGL Sbjct: 180 DAKYFES-AQLPMGELTHLLRSKAVLMPGVSVSLVNEKTRD-------QQAWQYKGGLAD 231 Query: 272 YLQTKLENRSLIS---SEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEG 327 YL L +I E F WA+A+ EE SY N I T G Sbjct: 232 YLAQSLPADPVIPLFSGEGFADAGHDSFAEGEGAAWAVAFTEEGSPVRESYVNLIPTSAG 291 Query: 328 GTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTH+SGLR L + +K + E + + ++ +D+ A +LS + +P+F GQ K + Sbjct: 292 GTHDSGLRDGLFQAVKGFIELHALLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKER 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L S DA R V + +R + +L Q+ +L E I+ ++ R R ++ E + + + Sbjct: 352 LNSRDAVRLVSSFVRPALELWLNQHVDYGKRLAELAIKAAQTRQRAGQKVEKKKGSGVAV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L PGKL DC E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN + Sbjct: 412 L--PGKLTDCESRDTAYNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVERDL 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N ++ D+ A+G + D LRY KV I++DADVDGAHI LLLT F++ Sbjct: 470 LFRNNEVHDISVAIGVDPHGPHDSPDLSGLRYGKVCILSDADVDGAHIQVLLLTLFFRHF 529 Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 LIE +++ PPL+R+ +G K +YA DE + IL++ K G + K +IS Sbjct: 530 PRLIEAGRIYVARPPLYRVDVPARGKKPAAKLYALDEGELEAILDKAAKDGVPREKCQIS 589 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM A QL ET ++ + R LL V++ T+ I KLMG +A R + + Sbjct: 590 RFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GALDFAATEGLITKLMGKGEAASRRELM 647 Query: 675 QERASFID 682 + ++ Sbjct: 648 ELHGDAVE 655 >gi|116249778|ref|YP_765616.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|115254426|emb|CAK05500.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 811 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 234/577 (40%), Positives = 341/577 (59%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+++ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + + R + I F+ G+ +PL+ N+ GT ++F Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P F FD L + A+L+ V+ + + K +EE + GGL Sbjct: 181 MPSTDTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + ++ + + + EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIHGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+ + + + +D +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VE+ + + + + ++P EA L+ V+E + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LIE+ HL++ PPL+++++G Y DE+ ++ L Sbjct: 532 QLIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V +N D Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQ+ A + ++ Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810 >gi|117923324|ref|YP_863941.1| DNA gyrase subunit B [Magnetococcus sp. MC-1] gi|117607080|gb|ABK42535.1| DNA gyrase subunit B [Magnetococcus sp. MC-1] Length = 812 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 225/585 (38%), Positives = 349/585 (59%), Gaps = 19/585 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 A Q YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 TTENAPEAQHDHSTYDSTNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+ + +EV L +G +V DNGRGIP + H K +S E+I+T LHAGGKFD+++Y Sbjct: 62 ALAGHCDRVEVILHTDGSCSVSDNGRGIPTDMH-KEEGRSAAEVIMTVLHAGGKFDDNSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 +ISGGLHGVG+SVVNALS+ L +T+ R + Q + G P +PL + GT + Sbjct: 121 KISGGLHGVGVSVVNALSETLELTIKRGGKVCHQTYHLGEPTAPLAVIGDTPD-SGTTVR 179 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+P P IF + F L + + ++L+ V+ +++ + F++ GG Sbjct: 180 FKPSPLIFHNVLEFSFDTLSQRLRELSFLNDGVRIFIHDERD-------DKSHNFFYEGG 232 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 ++++++ + R+ + I + + T E A+ W + + + N I +G Sbjct: 233 IRSFVEYLNKARTPLMPPIHF----RDERNGITAEVALQWNDSYQENVYCFTNNIPQRDG 288 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH +G R ALTR I YA K ++I DD ++SV + +P+F+ QTK Sbjct: 289 GTHLAGFRGALTRTINNYASANNLLKKEKVTISGDDCREGLTAVISVKVPDPKFSSQTKD 348 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAI 444 KLVS + + VE+ + + + ++P EA ++ + V + R+ + RK+A+ Sbjct: 349 KLVSSEVRPVVESVIGESLGTFFEEHPAEAKAIIAKSVEAANAREAARKARELTRRKSAL 408 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC + EL++VEGDSAGGSAKQAR+R +QAVLPL+GKILNV A Sbjct: 409 EISSLPGKLADCQERDPAKCELYLVEGDSAGGSAKQARDRKHQAVLPLKGKILNVEKARF 468 Query: 505 EKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +K+ ++Q++ L+ ALG R +Y E LRY +IIMTDADVDGAHI +LLLTFFY++M Sbjct: 469 DKMISSQEVGTLITALGTGIGREEYNIEKLRYHHIIIMTDADVDGAHIRTLLLTFFYRQM 528 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +++++ HL++ PPL+R+++G + Y D++ ++L + HG Sbjct: 529 PEIVKRGHLYIAQPPLYRVSKGKQEQYLKDDDALNQLLMNYGLHG 573 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 L+ G+ + I R+KGLGEM QL ET MD + RTLL+V ++ ++ + Sbjct: 729 DFLQLVLDEGRRGLTIQRYKGLGEMNPDQLWETTMDPSVRTLLQVRVDDEVG----ANEV 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQE A + ++ Sbjct: 785 FTTLMGDVVEPRRDFIQENALNVTNLD 811 >gi|77163566|ref|YP_342091.1| DNA gyrase, B subunit [Nitrosococcus oceani ATCC 19707] gi|254435249|ref|ZP_05048756.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27] gi|76881880|gb|ABA56561.1| DNA gyrase subunit B [Nitrosococcus oceani ATCC 19707] gi|207088360|gb|EDZ65632.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27] Length = 807 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 229/581 (39%), Positives = 349/581 (60%), Gaps = 19/581 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 AS YD+S I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N I Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +T+ DNGRGIP + H + +S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHSDDSITISDNGRGIPTDIHQE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L + + R I+ Q + G+P PL + GT I F P PKIF Sbjct: 121 GVSVVNALSAVLFLEIHRDGKIYQQHYQEGVPQGPLVAVG-TTERSGTTIRFSPSPKIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F K + A+L+ RV+ ++ I KEEF++ GG+ +++ Sbjct: 180 NIV-FSFDIFAKRLRELAFLNSRVRILLEDER-------IGRKEEFFYEGGISAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F + E+ G VE A+ W + + N I +GGTH +G R Sbjct: 232 KNKTPLHGNVFYFQGERDGV---AVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288 Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + +Y E + DD +LS+ ++P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNQYIEKEALAKKTKVGTTGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + F ++L+++P++A + +IE + R RK RE RK A+ LPGKL Sbjct: 349 VVDSLVSEHFQNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 ADCQERDPTLSELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+ Sbjct: 469 ATLITALGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ ++ L Sbjct: 529 YIAQPPLYKVKRGKQEQYIRDDAEMERYLINLSTDNAKIYS 569 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + +D + L E + G+ + R+KGLGEM QL ET M+ R L Sbjct: 710 VQRGDRRQLVNDIQEAVDWLMEEARRGQA---VQRYKGLGEMNPDQLWETTMNPATRRLS 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I+ + + LMG + R FI+ A + + Sbjct: 767 QVRIDDVIT----ADEIFTTLMGDHVEPRRDFIESHALSVAHLD 806 >gi|104779320|ref|YP_605818.1| DNA gyrase subunit B [Pseudomonas entomophila L48] gi|95108307|emb|CAK13001.1| DNA gyrase, subunit B [Pseudomonas entomophila L48] Length = 806 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 347/569 (60%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ + GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++S++F ++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEGLDWLMNESTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 776 DQLFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|241759142|ref|ZP_04757250.1| DNA gyrase, B subunit [Neisseria flavescens SK114] gi|241320561|gb|EER56838.1| DNA gyrase, B subunit [Neisseria flavescens SK114] Length = 796 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 225/566 (39%), Positives = 332/566 (58%), Gaps = 19/566 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I V+ Sbjct: 7 EEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCDKITVT 66 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLHGVG+S Sbjct: 67 IHADNSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLHGVGVS 125 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD + +T+ R +F RG PL +K+GT + F + FG+ Sbjct: 126 VVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGD-SDKKGTTVRFLASVETFGNV- 183 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + ++L+ V + +++ + E F GG+ ++Q + Sbjct: 184 EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQYMNRKK 236 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +IF EK G +VE A+ W + + + N I +GGTH + LR +T Sbjct: 237 TPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + V Sbjct: 294 RTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVN 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L +NP EA + +++ + R RK RE+ R+ + L LPGKLADC Sbjct: 354 EVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q++ L Sbjct: 414 QEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATL 473 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ ++++ Sbjct: 474 ITALGTGIGKEEFNTEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL++ G + Y DE K + L Sbjct: 534 QPPLYKAKYGKQERYLKDELEKDQWL 559 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALLAQNIDA 796 >gi|262380670|ref|ZP_06073823.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164] gi|262297618|gb|EEY85534.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164] Length = 822 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + + YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN+ Sbjct: 2 SSESQSASPTEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +TV R I Q++ G+P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P + F F+ L + + ++L+ V+ ++ E F + Sbjct: 180 KVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLCDERINLE-------HVFDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ + G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +ELF+VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +++ ++ ++ L+ ALGC R +Y + LRY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE+ +L +G + V + ++ + + + + I R+KGL Sbjct: 714 RSWFSLIEEG-AYL--------EKGERRVQVSN---FHQVWQFILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|255320699|ref|ZP_05361876.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82] gi|255302315|gb|EET81555.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82] Length = 822 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + + YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN+ Sbjct: 2 SSESQSASPTEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNS 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +TV R I Q++ G+P PL + + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQT-ERTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P + F F+ L + + ++L+ V+ ++ E F + Sbjct: 180 KVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLCDERINLE-------HVFDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ + G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKNHLNEIFHFTTQAENGI---GVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +ELF+VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +++ ++ ++ L+ ALGC R +Y + LRY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDRMISSAEVGTLITALGCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + LIE+ +L +G + V + ++ + + + + I R+KGL Sbjct: 714 RSWFSLIEEG-AYL--------EKGERRVQVSN---FHQVWQFILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRNMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|209551517|ref|YP_002283434.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537273|gb|ACI57208.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 811 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 235/577 (40%), Positives = 344/577 (59%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+++ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + + RQ I F+ G+ +PL+ + N+ GT ++F Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAPNETGTEVSF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P F FD L + A+L+ V+ + + K +EE + GGL Sbjct: 181 MPSTDTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + ++ + + + + EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+ + + + +D +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VE+ + + + + ++P EA L+ V+E + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +LIE+ HL++ PPL+++++G Y DE+ ++ L Sbjct: 532 ELIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V++ D Sbjct: 727 RALLDAIFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVPDAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQ+ A + ++ Sbjct: 783 LFARLMGDEVEPRREFIQDNALSVANLD 810 >gi|325203331|gb|ADY98784.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240355] Length = 796 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASAET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|254805746|ref|YP_003083967.1| DNA gyrase subunit B [Neisseria meningitidis alpha14] gi|254669288|emb|CBA08244.1| DNA gyrase subunit B [Neisseria meningitidis alpha14] Length = 796 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|149912065|ref|ZP_01900656.1| Putative DNA gyrase, subunit B [Moritella sp. PE36] gi|149804861|gb|EDM64898.1| Putative DNA gyrase, subunit B [Moritella sp. PE36] Length = 805 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 227/578 (39%), Positives = 348/578 (60%), Gaps = 18/578 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ +G ++V D+GRGIPV+ H + S E+ILT LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHDDGSVSVSDDGRGIPVDIHEE-EGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R I +Q + G+P +P+ V GT++ F P F + Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAATG-VIEGTGTKLRFWPSHDTFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG+K ++ Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLIDERED------GKSDHFVYQGGIKAFIDYLNV 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + F E+ TVE A+ W + I + N I +GG H +G R A Sbjct: 233 NKTPINKDAFHFSVERDD--GITVEVAMQWNDGFQEAIYCFTNNIPQRDGGAHLAGFRGA 290 Query: 338 LTRGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 LTR + Y E + ++ + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 LTRTLNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE ++ + YL++NP EA ++ +I+ S R RK RK A+ LPGKL Sbjct: 351 AVEQSMGEKLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFF+++M +LIE+ ++ Sbjct: 471 ATLITAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 ++ PPL+++ +G + Y D+ + L G Sbjct: 531 YIAQPPLYKMKKGKQERYLKDDADLTQYLTTIALDDAG 568 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ + L K I R+KGLGEM SQL ET MD + R +L Sbjct: 708 IKRGEKTREVTS---FVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPDTRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R +FI+E A + ++ Sbjct: 765 QVRIEDAV----AADQLFTTLMGDHVEPRREFIEENALKVANLD 804 >gi|260429429|ref|ZP_05783406.1| DNA gyrase, B subunit [Citreicella sp. SE45] gi|260420052|gb|EEX13305.1| DNA gyrase, B subunit [Citreicella sp. SE45] Length = 805 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 331/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 AEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ADFVRVKIHADNSVSVRDNGRGIPVDMHHE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS L + + R KF G L + ++GT + F Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETTEHLRVVGEAPGEKGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + FD L K + A+L+ V+ ++ P + E ++ GG+K ++ Sbjct: 181 GTFSNL-DFDFHTLEKRLRELAFLNSGVRIILEDER-----PAEPLRIELHYDGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++ + + EK G VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKQPMMPDPIYMTGEKDGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + +YA + + ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTLTRYATDSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VEN + + + ++P EA ++ ++E + R RK RE RK + L Sbjct: 352 EVRPAVENLVNEKLTEWFEEHPNEAKIIVGKIVEAALAREAARKARELTRRKNPMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TELFIVEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ Sbjct: 412 AGKLKDCSEKDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ E LRY K+I+MTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ L + G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYVKDQAALDAYLIDQGIDG 571 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE + G+ + + R+KGLGEM QL ET +D + RTLL+V ++ L + D Sbjct: 723 LLEGILEEGEKGLALQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDD----LTEADDIF 778 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 779 TKLMGDVVEPRREFIQQNALSVENLD 804 >gi|92112140|ref|YP_572068.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043] gi|91795230|gb|ABE57369.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043] Length = 805 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 230/579 (39%), Positives = 340/579 (58%), Gaps = 19/579 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ + I Sbjct: 2 SEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIR 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV DNGRGIP + H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VVIHPDESITVSDNGRGIPTDIHSE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+EL +TV R ++ Q + G+P SPL+ K GT++ F+P + F + Sbjct: 121 VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTEK-SGTQVNFKPSTETFAN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++ AE E F++ GGL+ ++ Sbjct: 180 I-EFHYDILAKRLRELSFLNSGVAIRLIDERSGAE-------ELFHYEGGLRAFVDHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ G VE A+ W + I Y N I +GGTH +G R A Sbjct: 232 NKTALNQIFHFETQRDDGI---AVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRTLNHYIESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE + F YLV+ P EA ++ +++ + R RK RK A+ LPGKLA Sbjct: 349 VEQEMGRQFSDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+F Sbjct: 469 TLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVF 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 + PPL++I +G + Y DE+ L G Sbjct: 529 IAQPPLYKIKRGKQETYLKDEQALTDYLTTTALDGARLY 567 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ + + + R+KGLGEM QL ET MD R +LRV I + S Sbjct: 723 EALDWLMSEAQRGLSVQRYKGLGEMNPEQLWETTMDPQSRRMLRVSIEDAVAS----DMM 778 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 N LMG + + R FI+ A + ++ Sbjct: 779 FNTLMGDEVEPRRDFIERNAL-VANLD 804 >gi|15676138|ref|NP_273269.1| DNA gyrase subunit B [Neisseria meningitidis MC58] gi|7225433|gb|AAF40668.1| DNA gyrase subunit B [Neisseria meningitidis MC58] gi|316985132|gb|EFV64084.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76] gi|325199420|gb|ADY94875.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76] Length = 796 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 340/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|218665824|ref|YP_002424518.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518037|gb|ACK78623.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 800 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 345/573 (60%), Gaps = 19/573 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD+SSI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE + GY + I V+ Sbjct: 3 ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ DNGRGIPV+ H +S E+I+T LHAGGKFD++ Y++SGGLHGVG+S Sbjct: 63 IHEDESVSISDNGRGIPVDMHA-GEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L + + R +++Q++ G P +P+ + K G+ I F+P P++F D Sbjct: 122 VVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTH 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + K + A+L+ V ++ E E F++ GG++ +++ ++ Sbjct: 181 -FHFEIIAKRLRELAFLNSGVHITLLDERASRE-------ETFHYEGGIRAFVEHLNRSK 232 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I + T E+ G VE A+ W E + + N I +GGTH +G R ALT Sbjct: 233 TAIHPSVITLTGERDGI---VVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALT 289 Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + +Y E K +++ +D +LSV + +P+F+ QTK KLVS + + VE Sbjct: 290 RTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVE 349 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 +++ + +L ++P EA + ++E + R R+ RE RK A+ LPGKLADC Sbjct: 350 SSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADC 409 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV A +++ ++ +I L Sbjct: 410 QEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTL 469 Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + LRY +VIIMTDADVDG+HI +LLLTFFY++M DL+ + H+++ Sbjct: 470 ITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIA 529 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+ L E G Sbjct: 530 QPPLYKVKKGKEERYLKDDGELAAYLREIAMQG 562 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + ++ + +EI R+KGLGEM QL ET M+A R L+RV++ + Sbjct: 715 FRTAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAI----AAD 770 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R +FI+E A F+ + Sbjct: 771 EVFSMLMGDAVEPRRRFIEENARFVSRLD 799 >gi|198282152|ref|YP_002218473.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246673|gb|ACH82266.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 801 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 345/573 (60%), Gaps = 19/573 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + YD+SSI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE + GY + I V+ Sbjct: 4 ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ DNGRGIPV+ H +S E+I+T LHAGGKFD++ Y++SGGLHGVG+S Sbjct: 64 IHEDESVSISDNGRGIPVDMHA-GEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVS 122 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L + + R +++Q++ G P +P+ + K G+ I F+P P++F D Sbjct: 123 VVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTH 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F + K + A+L+ V ++ E E F++ GG++ +++ ++ Sbjct: 182 -FHFEIIAKRLRELAFLNSGVHITLLDERASRE-------ETFHYEGGIRAFVEHLNRSK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I + T E+ G VE A+ W E + + N I +GGTH +G R ALT Sbjct: 234 TAIHPSVITLTGERDGI---VVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALT 290 Query: 340 RGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + +Y E K +++ +D +LSV + +P+F+ QTK KLVS + + VE Sbjct: 291 RTLNQYMEREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVE 350 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 +++ + +L ++P EA + ++E + R R+ RE RK A+ LPGKLADC Sbjct: 351 SSMSEALTMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADC 410 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + E+++VEGDSAGGSAKQ R+R +QA+LPL+GKILNV A +++ ++ +I L Sbjct: 411 QEKDPAQCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTL 470 Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + LRY +VIIMTDADVDG+HI +LLLTFFY++M DL+ + H+++ Sbjct: 471 ITALGTGIGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIA 530 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+ L E G Sbjct: 531 QPPLYKVKKGKEERYLKDDGELAAYLREIAMQG 563 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + ++ + +EI R+KGLGEM QL ET M+A R L+RV++ + Sbjct: 716 FRTAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAI----AAD 771 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R +FI+E A F+ + Sbjct: 772 EVFSMLMGDAVEPRRRFIEENARFVSRLD 800 >gi|258546265|ref|ZP_05706499.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826] gi|258518531|gb|EEV87390.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826] Length = 800 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 235/569 (41%), Positives = 340/569 (59%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +++YD+S IR+L+GLE VR+RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I Sbjct: 2 SDNNSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + +TV DNGRGIPV+ HP+ +S E+I+T LHAGGKFD++ Y++SGGLHGV Sbjct: 62 NVIIHQDESITVRDNGRGIPVDIHPE-EGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +T+ R I Q + G P +PL + GT I F FG Sbjct: 121 GVSVVNALSERLTMTIKRDGHIHQQTYRHGEPQAPLAIIGD-SDSTGTEINFLASSDTFG 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +D L + + ++L+ V+ ++ + + F + GG+K +++ + Sbjct: 180 TVI-YDYDTLAQRLRELSFLNAGVRIELRDERS-------DKNQIFQYEGGVKAFVEYQN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ I IF +K G VE A+ W + + + N I +GGTH +G R Sbjct: 232 RNKTPIHPSIFYCAADKDGV---AVEIALQWNDSYAENVYCFTNNIPQRDGGTHLAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K I+ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 AMTRTLNAYMEEEGLLKKAKIATSGDDSREGLTAIVSVKVHDPKFSSQTKDKLVSSEVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VEN L D YL+++P EA + +++ + R RK R RK A+ LPGKL Sbjct: 349 AVENVLADKLKEYLLEHPGEAKTIAGKIVDAARAREAARKAREMTRRKDALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+FIVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + +I Sbjct: 409 ADCQEKDPAHSEIFIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEI 468 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+ Sbjct: 469 GTLITALGTGIGKDDFDAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++T+G Y D+ ++L Sbjct: 529 YIAQPPLYKVTKGRNKQYLKDDHELNELL 557 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%) Query: 583 TQGTKSV-------YAHDEEHK------QKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629 T G K Y + + + +++ GK +I R+KGLGEM QL Sbjct: 689 TFGKKVRGLLGDGAYFQNSKERLEVEHFHQVINALLAEGKKAYDIQRYKGLGEMNPEQLW 748 Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ET +D R +L+V++ + + LMG + + R FI++ A+ ++ Sbjct: 749 ETTLDPAVRRMLQVQL----KDARLADEIFTTLMGEEVEPRRAFIEDNANSA-NID 799 >gi|226952833|ref|ZP_03823297.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ATCC 27244] gi|294648699|ref|ZP_06726159.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter haemolyticus ATCC 19194] gi|226836454|gb|EEH68837.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ATCC 27244] gi|292825374|gb|EFF84117.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 822 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 226/581 (38%), Positives = 341/581 (58%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSVSQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R Q++ G P PL + ++ GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P + F F+ L + + ++L+ V+ ++ E + + Sbjct: 180 IVRFWPSAETFSQTI-FNVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G +VE A+ W + + + N I Sbjct: 232 EGGLSEFVRYINEGKTHLNEIFHFTTDADNGI---SVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K + + DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ ++++ PPL+++ +G + Y D E + L Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYLQDNEALETFL 569 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + + + + I R+KGLGEM A QL ET MD R +L+V I+ + + Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAI----EAD 793 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R FI+E A D + Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822 >gi|89052495|ref|YP_507946.1| DNA gyrase subunit B [Jannaschia sp. CCS1] gi|88862044|gb|ABD52921.1| DNA gyrase subunit B [Jannaschia sp. CCS1] Length = 805 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 228/570 (40%), Positives = 337/570 (59%), Gaps = 16/570 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 ++ D+Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 5 PASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADA 64 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + V+L + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHG Sbjct: 65 VTVTLHADSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALSD L + + R +F G PLE + ++ GT + F + F Sbjct: 124 VGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMASTETF 183 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + + L + A+L+ V+ ++ + + ++ GG++ +++ Sbjct: 184 SNL-DYVFKTLENRLRELAFLNSGVRIILRDER-----PAEALESDLFYEGGVREFVRYL 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 +++ E EK VE A+ W + E + N I +GGTH +G R Sbjct: 238 DRSKTSAMEEPIFITGEKDDI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFR 294 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR I YA+ + K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 295 GALTRTINLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGK 452 VE + + + ++P EA ++ ++E + R RK RE RKTA+ LPGK Sbjct: 355 PAVEGLVNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV A +++ +Q+ Sbjct: 415 LADCQEKDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQE 474 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I L+ ALG R ++ + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE + Sbjct: 475 IGTLITALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGY 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 L++ PPL+++++G VY DE + L Sbjct: 535 LYIAQPPLYKVSRGKSEVYLKDETALEDYL 564 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ G ++ R+KGLGEM QL ET +D RTLL+V+I+ ++ Sbjct: 722 ELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDI---- 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQNNALSVENLD 804 >gi|294788048|ref|ZP_06753292.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453] gi|294484341|gb|EFG32024.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453] Length = 657 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 246/660 (37%), Positives = 352/660 (53%), Gaps = 38/660 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y SSI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+A I+V Sbjct: 2 TKQSYSESSIQVLKGLEPVKERPGMY---TRTDSPTHICQEVIDNAADEALGGFATQIDV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGLH 155 + +G L V DNGRGIP HP +E++ T LHAGGKF+ + Y SGGLH Sbjct: 59 KIQSDGSLCVRDNGRGIPTGLHP-IEKIPVVELVFTQLHAGGKFNKKSGDGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214 GVG+SV NALS L V V R+ I F+ G + PL + K GT + P+PK Sbjct: 118 GVGVSVTNALSTRLEVMVKREGKISRIVFANGDVVEPLTQIGKCAIKDTGTEVRVYPNPK 177 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F ++ L ++ ++KA L V + G+PE + +++P GL++YL Sbjct: 178 YFESPN-YNIGELERLLRAKAVLLQGVTVSLT-----RHIKGLPETQTWHYPQGLRSYLT 231 Query: 275 TKLENRSLISS----EIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGT 329 LEN I E + + +A+ W E+ SY N I T GGT Sbjct: 232 DLLENTQEIVPIFAAENYISGSHDDFNAGEGAAFALTWLEDGSCANESYVNLIPTPLGGT 291 Query: 330 HESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 HE+GL+ A + + R + + SDD+ +LS + +P+F GQTK KL Sbjct: 292 HEAGLKQAAFNAVNNFIMHHNLLPRGVKLQSDDVFSRVAFVLSARVLDPQFQGQTKDKLT 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 + DA + V DP + +L QN K+ E I++++ R+R +++ +K Sbjct: 352 NRDALKLVATVCSDPLELWLNQNVEIGRKIAELAIKQAQARMRSV--KKIEKKKGSGVAV 409 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC ELF+VEGDSAGGSAK AR++S QAVLPLRGK+LN +++ Sbjct: 410 LPGKLTDCESEDTRENELFLVEGDSAGGSAKLARDKSFQAVLPLRGKVLNSFEVNRDQLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G + + DL RY K+ I++DADVDG+HI LLLT FY+ Sbjct: 470 GNAEIHDISVAIGIDPHGKNEDVDLSGLRYGKIAILSDADVDGSHIQVLLLTLFYRHFPK 529 Query: 566 LIEQKHLFLISPPLFRI-------TQGTKSVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 LIE ++++ PPLFR+ T+ + YA D+ ILE KK + ISR Sbjct: 530 LIENGNIYVAQPPLFRVDVNAQSKTKPARKFYALDQAELDGILERLKKENVKESAYSISR 589 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM QLK+T + + R LL+V I + + +T+ KLMG +A R +++ Sbjct: 590 FKGLGEMNPDQLKDTTLHPDTRRLLQVHIPEAMAD--NTESVFLKLMGKGEASSRRAWME 647 >gi|268597708|ref|ZP_06131875.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|268683013|ref|ZP_06149875.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] gi|268551496|gb|EEZ46515.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|268623297|gb|EEZ55697.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] Length = 796 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|223936717|ref|ZP_03628627.1| DNA gyrase, B subunit [bacterium Ellin514] gi|223894568|gb|EEF61019.1| DNA gyrase, B subunit [bacterium Ellin514] Length = 853 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 231/626 (36%), Positives = 343/626 (54%), Gaps = 28/626 (4%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 KK + + A A A D+YDAS I LEGL+ VR RPGMYIG TDE+ LHH EV+ Sbjct: 2 SKKPEVLEEELAVAKPEAGDSYDASKIDKLEGLDGVRKRPGMYIGPTDERGLHHCVFEVM 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+ + IEV++ +G +++ DNGRGIPV++H K +E +LT LHAGGK Sbjct: 62 DNSIDEHLAGFCSKIEVTMHVDGSVSIRDNGRGIPVDSHEKTKGMPAVEFVLTHLHAGGK 121 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 F Y+ SGGLHGVG VNALSD V V+R + ++ F RG L+ +N Sbjct: 122 FGQGAYKYSGGLHGVGAKCVNALSDWFKVEVSRDSKVYHMAFERGKTTETLKVIGSSKN- 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT ITF+ DP IF F L + A+L+ + + ++ + E+ Sbjct: 181 TGTLITFKADPTIFTITTEFKFEILANRLRELAFLNPGLVIQLTDER------AESKSEK 234 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEK----------KGTHRGTVEWAIAWCEEN 312 F+F G++ +++ +N+ +I + + + ++ + + + Sbjct: 235 FFFEDGVRDFVEQLGKNKQVIHPKPIVLNGRRPVKYKGKDGNEVEADMILDCVLQYNDSY 294 Query: 313 PEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 + Y N I +GG+H +G R ALTR I +YA+ ++ S+ DD+ V + Sbjct: 295 SDQILCYTNAIPNPDGGSHSTGFRTALTRAINQYAKANNLIKEKDPSLTGDDVREGLVAV 354 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 +++ P F QTK KLV+ +A+ V + D Y NP A K+++ + + R Sbjct: 355 VAIKHPNPSFESQTKVKLVTPEAEGIVSSITYDGLMAYFDGNPSAAKKIVDKGLTAARAR 414 Query: 430 LRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK RE RK+A+ LPGKLADCS TE++IVEGDSAGGSAKQ R+R QA+ Sbjct: 415 EAARKARETVRKSALTGGGLPGKLADCSDRDPANTEVYIVEGDSAGGSAKQGRDRKFQAI 474 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS-----QYREEDLRYEKVIIMTDA 544 LP+RGK++NV A +K+ N +I ++ A+G + + LRY K+IIMTDA Sbjct: 475 LPIRGKLINVEKARLDKVLQNTEIRTMITAVGTGIGDGEGEGSFNIQKLRYHKIIIMTDA 534 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDG+HI +LLLTFFY++M LI+ +++ PPL++I++ + Y D+ KIL + Sbjct: 535 DVDGSHIRTLLLTFFYRQMPQLIKGGFIYIAQPPLYQISRKKRVEYVEDDAQLNKILIQI 594 Query: 605 KKHGKGKIEISRFKGLGEMLASQLKE 630 I+ K EM SQL E Sbjct: 595 ATDEVRLRNITDGK---EMSRSQLAE 617 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Query: 578 PLFRITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PLF + +G + +IL+ + G+ I+I RFKGLGEM A+QL ET MD Sbjct: 748 PLFELIEGEGEKQTVKPLFSIAEILDSVLEVGRRGIQIKRFKGLGEMNAAQLFETTMDPA 807 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LLRV DL + ++ +KLMG + + R +FI++ A + ++ Sbjct: 808 KRKLLRV----DLADAVEAEEMFSKLMGDEVEPRRQFIEDNALNVRNLD 852 >gi|59802091|ref|YP_208803.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090] gi|254494648|ref|ZP_05107819.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291] gi|260439612|ref|ZP_05793428.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|268593849|ref|ZP_06128016.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|268599958|ref|ZP_06134125.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|268602293|ref|ZP_06136460.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|268683318|ref|ZP_06150180.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|268687441|ref|ZP_06154303.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|293398129|ref|ZP_06642334.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62] gi|59718986|gb|AAW90391.1| putative DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090] gi|226513688|gb|EEH63033.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291] gi|268547238|gb|EEZ42656.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|268584089|gb|EEZ48765.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|268586424|gb|EEZ51100.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|268623602|gb|EEZ56002.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|268627725|gb|EEZ60125.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|291611392|gb|EFF40462.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62] Length = 796 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|163783146|ref|ZP_02178140.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1] gi|159881480|gb|EDP74990.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1] Length = 798 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 230/603 (38%), Positives = 341/603 (56%), Gaps = 21/603 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 P+ + +Y A I+ + GLE VR+RP MYIG E+ LHHL E++DNA+ Sbjct: 1 MTNPEDLKNPQEVQDVDYGAQDIKAVTGLEHVRLRPAMYIGDVGERGLHHLIWEILDNAV 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AGYA + V + +G +TV D+GRGIPV+ HP+ K +E++ T L AGGKF+ Sbjct: 61 DEAMAGYAKNVSVIIHDDGSITVEDDGRGIPVDIHPE-TGKPAVEMVFTMLGAGGKFEKK 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y SGGLHGVG SVVNALS+ L V V R I+ Q++ RG P+ L+ RGTR Sbjct: 120 AYAYSGGLHGVGASVVNALSEWLLVEVYRDGKIYRQEYRRGEPVYELKVVGNTTK-RGTR 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF+PDP IF + K + AYL+ V+ ++ E + F Sbjct: 179 VTFKPDPDIFETTR-IKFDIVEKRLRELAYLNPEVRFYLKDERSDKEIV-------YKFD 230 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 G++ ++ + + + +I + +K G V+ A + + I S+ N + T Sbjct: 231 RGIEELVEYLSQAKEPLFKDIVRIQGDKDGVI---VDIAFRYVRDYKELIDSFVNNVKTV 287 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH +G R LT+ + + AE + + + +D+ V ++S + EP+F GQT Sbjct: 288 EGGTHVTGFRSGLTKAVVRLAEGLKLSKELKTMFSGEDVREGLVAVISCKVPEPQFEGQT 347 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 KTKL + + + V++ + D Y +N ++E IE + R +K +E V RK+ Sbjct: 348 KTKLGNQNVKTIVDSIVYDYLTEYFNENKDVLKLIVEKAIEAALAREAAKKAKELVRRKS 407 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADCS+ E+FIVEGDSAGGSAKQAR+R QA+LPLRGKI+NV A Sbjct: 408 PLEDGILPGKLADCSEKDPEKCEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINVEKA 467 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ N+++ +V ALGC + LRY K+I+MTDAD+DG+HI +LLLTFFY+ Sbjct: 468 RIDKVLANEEVKAIVSALGCGIGEELDLSKLRYHKIILMTDADIDGSHIRTLLLTFFYRF 527 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISR-FKG- 619 M LIE ++++ PPL+++ +G K +Y D+ + L+E K K + R F+G Sbjct: 528 MPQLIENGYVYIALPPLYKLKKGRKEMYVKDDRELEHFLQELVKEHSYIKDSVGREFRGE 587 Query: 620 -LG 621 LG Sbjct: 588 ELG 590 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++ + + K IEI R+KGLGEM QL ET MD R L+RV + + + Sbjct: 713 LKEVYDTVMELVKSGIEIQRYKGLGEMNPQQLWETTMDPKTRRLMRVTVEDAV----EAD 768 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 769 RIFTILMGEQVEPRREFIETYAKEVKNLD 797 >gi|167031027|ref|YP_001666258.1| DNA gyrase subunit B [Pseudomonas putida GB-1] gi|166857515|gb|ABY95922.1| DNA gyrase, B subunit [Pseudomonas putida GB-1] Length = 806 Score = 508 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 346/569 (60%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++S++F ++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNSQVFHFNVQRDD--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|189023380|ref|YP_001934148.1| DNA gyrase subunit B [Brucella abortus S19] gi|225626666|ref|ZP_03784705.1| DNA gyrase, B subunit [Brucella ceti str. Cudo] gi|237814597|ref|ZP_04593595.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A] gi|254694923|ref|ZP_05156751.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|254696550|ref|ZP_05158378.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|254700937|ref|ZP_05162765.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|254707179|ref|ZP_05169007.1| DNA gyrase subunit B [Brucella pinnipedialis M163/99/10] gi|254709277|ref|ZP_05171088.1| DNA gyrase subunit B [Brucella pinnipedialis B2/94] gi|254731465|ref|ZP_05190043.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|256030800|ref|ZP_05444414.1| DNA gyrase subunit B [Brucella pinnipedialis M292/94/1] gi|256060267|ref|ZP_05450442.1| DNA gyrase subunit B [Brucella neotomae 5K33] gi|256158821|ref|ZP_05456682.1| DNA gyrase subunit B [Brucella ceti M490/95/1] gi|256254206|ref|ZP_05459742.1| DNA gyrase subunit B [Brucella ceti B1/94] gi|256258686|ref|ZP_05464222.1| DNA gyrase subunit B [Brucella abortus bv. 9 str. C68] gi|260169704|ref|ZP_05756515.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|260546403|ref|ZP_05822143.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260759206|ref|ZP_05871554.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|260760928|ref|ZP_05873271.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260885003|ref|ZP_05896617.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215258|ref|ZP_05929539.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|261221355|ref|ZP_05935636.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314658|ref|ZP_05953855.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316784|ref|ZP_05955981.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94] gi|261324241|ref|ZP_05963438.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751453|ref|ZP_05995162.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|261759241|ref|ZP_06002950.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|265987855|ref|ZP_06100412.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1] gi|265997315|ref|ZP_06109872.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851528|ref|ZP_06792201.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026] gi|297247522|ref|ZP_06931240.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196] gi|189018952|gb|ACD71674.1| DNA gyrase subunit B [Brucella abortus S19] gi|225618323|gb|EEH15366.1| DNA gyrase, B subunit [Brucella ceti str. Cudo] gi|237789434|gb|EEP63644.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A] gi|260096510|gb|EEW80386.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669524|gb|EEX56464.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|260671360|gb|EEX58181.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260874531|gb|EEX81600.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916865|gb|EEX83726.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|260919939|gb|EEX86592.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261296007|gb|EEX99503.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94] gi|261300221|gb|EEY03718.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303684|gb|EEY07181.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261739225|gb|EEY27221.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|261741206|gb|EEY29132.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|262551783|gb|EEZ07773.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264660052|gb|EEZ30313.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1] gi|294820117|gb|EFG37116.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026] gi|297174691|gb|EFH34038.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196] Length = 813 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 593 LRSVVED--ARTLRQL 606 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|62289106|ref|YP_220899.1| DNA gyrase subunit B [Brucella abortus bv. 1 str. 9-941] gi|82699044|ref|YP_413618.1| DNA gyrase subunit B [Brucella melitensis biovar Abortus 2308] gi|256368589|ref|YP_003106095.1| DNA gyrase subunit B [Brucella microti CCM 4915] gi|62195238|gb|AAX73538.1| GyrB, DNA gyrase, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82615145|emb|CAJ10078.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Brucella melitensis biovar Abortus 2308] gi|255998747|gb|ACU47146.1| DNA gyrase subunit B [Brucella microti CCM 4915] Length = 810 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 589 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 590 LRSVVED--ARTLRQL 603 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809 >gi|254690434|ref|ZP_05153688.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] gi|260755982|ref|ZP_05868330.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] gi|260676090|gb|EEX62911.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] Length = 813 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 242/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 593 LRSVVED--ARTLRQL 606 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|268604557|ref|ZP_06138724.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] gi|268588688|gb|EEZ53364.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] Length = 796 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL+ +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGD-SDKKGTTVRFLAGTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNI-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVINQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGENE---YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|299133396|ref|ZP_07026591.1| DNA gyrase, B subunit [Afipia sp. 1NLS2] gi|298593533|gb|EFI53733.1| DNA gyrase, B subunit [Afipia sp. 1NLS2] Length = 809 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 242/580 (41%), Positives = 338/580 (58%), Gaps = 14/580 (2%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 + + + Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN +DE Sbjct: 2 SEPARKSTSEPAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 V+AG+A +EV+L+ + +TV D+GRGIP + H K S E+I+T LHAGGKFD ++Y Sbjct: 62 VLAGHATRVEVTLNPDNSVTVYDDGRGIPTDIH-KGEGISAAEVIMTQLHAGGKFDQNSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG+SVVNALS +L + + R + +F G ++PL KRGT +T Sbjct: 121 KVSGGLHGVGVSVVNALSSKLALRIWRNDKEHYIEFKHGDAVAPLVVVGDANGKRGTEVT 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F + F +D L + A+L+ V S + E+ EE ++ GG Sbjct: 181 FLASTETFT-HTDYDFDTLEHRLRELAFLNSGVHILLSDKRHAVERR-----EELHYEGG 234 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEG 327 ++ +++ N+ + + E+ G +VE A+ W + E + N I +G Sbjct: 235 VEAFVKFLDRNKKAVVDTPIVMRAEQNGI---SVEVAMWWNDSYHENVLCFTNNIPQRDG 291 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 GTH +G R ALTR I YAE K IS+ DD +LSV + +P+F+ QTK KL Sbjct: 292 GTHLAGFRGALTRQITGYAEGMAKKEKISLTGDDCREGLTAVLSVKVPDPKFSSQTKDKL 351 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 VS + + VEN L +L ++P EA ++ VIE + R RK R+ RK A+ Sbjct: 352 VSSEVRPVVENVLNASLSAWLEEHPTEAKTIVGKVIEAAAAREAARKARDLTRRKGALDI 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A +K Sbjct: 412 ASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDK 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + +++QI L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF+++M Sbjct: 472 MLSSEQIGTLITALGTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPS 531 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 LIE HL++ PPL+++T+G Y DE + L E Sbjct: 532 LIEGGHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 571 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + R+KGLGEM +QL ET +D N R+LL+V+I + D Sbjct: 727 SLFEAVTDAGRKGVTYQRYKGLGEMNPNQLWETTLDTNARSLLQVKI----REVDAADDI 782 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 783 FTKLMGDIVEPRREFIQDNSLDA-NVD 808 >gi|17988106|ref|NP_540740.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. 16M] gi|225851665|ref|YP_002731898.1| DNA gyrase subunit B [Brucella melitensis ATCC 23457] gi|256045916|ref|ZP_05448790.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|256112631|ref|ZP_05453552.1| DNA gyrase subunit B [Brucella melitensis bv. 3 str. Ether] gi|256264825|ref|ZP_05467357.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9] gi|260563202|ref|ZP_05833688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265992329|ref|ZP_06104886.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994072|ref|ZP_06106629.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17983859|gb|AAL53004.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M] gi|225640030|gb|ACN99943.1| DNA gyrase, B subunit [Brucella melitensis ATCC 23457] gi|260153218|gb|EEW88310.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262765053|gb|EEZ10974.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003395|gb|EEZ15688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263095280|gb|EEZ18907.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9] gi|326408144|gb|ADZ65209.1| DNA gyrase subunit B [Brucella melitensis M28] gi|326537855|gb|ADZ86070.1| DNA gyrase, B subunit [Brucella melitensis M5-90] Length = 813 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 TDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 593 LRSVVED--ARTLRQL 606 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|330817903|ref|YP_004361608.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3] gi|327370296|gb|AEA61652.1| DNA topoisomerase IV, B subunit [Burkholderia gladioli BSR3] Length = 661 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 236/674 (35%), Positives = 353/674 (52%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 KQIIVTLHADQSVSVEDDGRGIPFGMHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R+ F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKFAELGFAHGDVVKPLVTQNAGRGEKKSGTRVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPDGKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVTEK-------TGERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTG-------KTEKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL ++ L+ + W +AW EE SY N Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADAKTSGDDSFADGEGASWVVAWSEEGSLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLRDGLFQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCETQDIARNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G + +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHAPDDHVDLSNLRYGKICILSDADVDGAHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+F+ PPLFR+ +G K +YA D+ + IL++ +K G + Sbjct: 527 LFFKHFPQLIERGHVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRE 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L + + T + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLAPIALGGLDYDA--TVSRMTMLMGKGEAS 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 ARRSWLEEKGNDVE 658 >gi|91789025|ref|YP_549977.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666] gi|91698250|gb|ABE45079.1| DNA topoisomerase IV subunit B [Polaromonas sp. JS666] Length = 659 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 241/669 (36%), Positives = 352/669 (52%), Gaps = 42/669 (6%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 +AS+ Y SIR+L+GLEPV+ RPGMY T H+ EV+DN+ DE +AGY I Sbjct: 6 STASNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNSADEALAGYGKKI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGL 154 +V+L +G ++V D+GRGIP HP+ +E++ T LHA K Y SGGL Sbjct: 63 KVTLHTDGSVSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGKGGAYSFSGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPD 212 HGVG+SV NALS L V R+ + FS G + L+ ++ R GT + PD Sbjct: 122 HGVGVSVTNALSKRLEVMSYREGMVARLVFSGGDVIEKLQLRKAAEGDRKCGTSVRAWPD 181 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 K F A A L + +SKA L V + +K E + + + GGL+ Y Sbjct: 182 AKYFES-AALPMAELTHLLRSKAVLMPGVTVTLTNEK-------TKETQTWAYKGGLRDY 233 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDE 326 L L +I +F G+ +H E A + P SY N I T Sbjct: 234 LMQTLTADPVI--PMFEGEGFADASHDSFAEGEGAQWCVAFTEDGQPMRESYVNLIPTSA 291 Query: 327 GGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GGTHESGLR L +K + + + + + ++ +D+ A +LS + +P+F GQ K Sbjct: 292 GGTHESGLRDGLFTAVKSFIDLHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKE 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR 445 +L S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + + Sbjct: 352 RLNSRDAVRLVSSFVRPTLELWLNQHVDYGRKLAELAIKAAQTRQKAGQKVEKRKGSGVA 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 L PGKL DC E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN + Sbjct: 412 VL--PGKLTDCESKDLAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERD 469 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 ++ N +I D+ A+G + + D LRY KV I++DADVDG+HI LLLT F++ Sbjct: 470 RLFANTEIHDIAVAIGVDPHGPHDKPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRH 529 Query: 563 MYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEI 614 LIE ++++ PPLFR+ +G K VYA DE IL++ +K G + I Sbjct: 530 FPKLIEAGNVYVARPPLFRVDAPARGKKPASKVYALDEGELTAILDKLRKDGVRENAWSI 589 Query: 615 SRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKF 673 SRFKGLGEM A QL ET ++ + R LL V++ T+ I KLMG +A R + Sbjct: 590 SRFKGLGEMSAEQLWETTLNPDTRRLLPVQL--GNFDFLQTESLITKLMGKGEAAARREL 647 Query: 674 IQERASFID 682 ++ ++ Sbjct: 648 MELHGDAVE 656 >gi|163745039|ref|ZP_02152399.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45] gi|161381857|gb|EDQ06266.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45] Length = 804 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 221/578 (38%), Positives = 334/578 (57%), Gaps = 17/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 4 TAQTPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 AVTVTIHEDSSVSVSDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R+ +F G LE ++ GT + F Sbjct: 123 GVGVSVVNALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMASTDT 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ + L K + A+L+ V+ + ++ P + E Y+ GG+K +++ Sbjct: 182 FSNR-EYIFETLEKRLRELAFLNSGVRIILTDER-----PVEPLRTELYYDGGVKEFVKY 235 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 +++ + E E+ +E A+ W + E + N I +GGTH +G Sbjct: 236 LDRHKTSVMPEPIFITGERDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 292 Query: 335 RVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + + I+ DD +LSV + +P+F+ QTK KLVS + Sbjct: 293 RGALTRTINGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 352 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE + + + +NP EA +++ ++E ++ R RK RE RK+A+ L G Sbjct: 353 RPAVEGLVNEKLAEWFEENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAG 412 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QA+LPL+GKILNV A +++ +Q Sbjct: 413 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQ 472 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 473 EIGNLVMALGTGIGRDEFNLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEHG 532 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 HL++ PPL+++++G VY D+ + L + G Sbjct: 533 HLYIAQPPLYKVSRGKSEVYLKDQAAMEDYLIQQGVDG 570 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + + R+KGLGEM QL ET +D + RTLL+V + + + D Sbjct: 721 DLLDAIFAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVED----MAEADDL 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 777 FTKLMGDVVEPRREFIQQNALSVENLD 803 >gi|297184292|gb|ADI20409.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b subunit [uncultured alpha proteobacterium EB080_L43F08] Length = 805 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 231/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +Q S+ Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +A +A+ Sbjct: 4 DQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRG+PV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 FVSVTIHADESVSVRDNGRGVPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R I +F G + LE + GT + F + Sbjct: 123 GVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMASTET 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ + L + A+L+ VK ++ + GG+K +++ Sbjct: 183 FSNR-EYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETT-----LLYDGGVKEFVKF 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++S + + EK TVE A+ W + E + N I +GGTH +G Sbjct: 237 LDRSKSSVIEDPIYIIGEKDDI---TVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA + K +S DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTINNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + + + +NP A +++ ++E + R RK RE RKTA LPG Sbjct: 354 RPVVESLMNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC Q +E+FIVEGDSAGGSAKQ R+R NQAVLPLRGKILN+ A +K+ ++ Sbjct: 414 KLADCQQKDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSE 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 QI +L+ ALG R ++ LRY KV+IMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 474 QITNLITALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++ +G VY D+ + L E G Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQVSLEDFLAEQGIEG 571 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM QL ET +D R L+V++ L D D Sbjct: 722 DLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVED----LADADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804 >gi|241206955|ref|YP_002978051.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860845|gb|ACS58512.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 811 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 234/577 (40%), Positives = 340/577 (58%), Gaps = 16/577 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A+++ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHADIVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS L + + R + I F+ G+ +PL+ N+ GT ++F Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P F FD L + A+L+ V+ + + K +EE + GGL Sbjct: 181 MPSTGTFT-MTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIK-----QEELRYDGGL 234 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGG 328 + ++ + + + EK G TVE A+ W + E + N I +GG Sbjct: 235 EAFVAYLDRAKKSLVDKPVAIHGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGG 291 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R ALTR + YA+ + + + +D +LSV + +P+F+ QTK K Sbjct: 292 THMAGFRAALTRQVVSYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDK 351 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIR 445 LVS + + VE+ + + + ++P EA L+ V+E + R RK RE RK A+ Sbjct: 352 LVSSEVRPVVESLVNEALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALD 411 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A + Sbjct: 412 IASLPGKLADCSERDPTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 471 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++Q+I L+ ALG E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 472 KMLSSQEIGTLITALGTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 531 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LIE+ HL++ PPL+++++G Y DE+ ++ L Sbjct: 532 QLIERGHLYIAQPPLYKVSRGKSVQYLKDEKALEEYL 568 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +D N R+LL+V +N D Sbjct: 727 RALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQE A + ++ Sbjct: 783 LFARLMGDEVEPRREFIQENALSVANLD 810 >gi|114769640|ref|ZP_01447250.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255] gi|114549345|gb|EAU52227.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255] Length = 805 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 231/578 (39%), Positives = 335/578 (57%), Gaps = 16/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +Q S+ Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +A +A+ Sbjct: 4 DQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRG+PV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 FVSVTIHADESVSVRDNGRGVPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R I +F G + LE + GT + F + Sbjct: 123 GVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMASTET 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F ++ + L + A+L+ VK ++ + GG+K +++ Sbjct: 183 FSNR-EYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETT-----LLYDGGVKEFVKF 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++S + + EK TVE A+ W + E + N I +GGTH +G Sbjct: 237 LDRSKSSVIEDPIYIIGEKDDI---TVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA + K +S DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTINNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + + + +NP A +++ ++E + R RK RE RKTA LPG Sbjct: 354 RPVVESLMNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC Q +E+FIVEGDSAGGSAKQ R+R NQAVLPLRGKILN+ A +K+ ++ Sbjct: 414 KLADCQQKDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSE 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 QI +L+ ALG R ++ LRY KV+IMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 474 QITNLITALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++ +G VY D+ + L E G Sbjct: 534 YLYIAQPPLYKVARGKSEVYLKDQVSLEDFLAEQGIEG 571 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM QL ET +D R L+V++ L D D Sbjct: 722 DLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVED----LADADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804 >gi|262374722|ref|ZP_06067994.1| DNA gyrase, B subunit [Acinetobacter junii SH205] gi|262310378|gb|EEY91470.1| DNA gyrase, B subunit [Acinetobacter junii SH205] Length = 822 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 344/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSVSQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEILVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+T+ R I Q++ G P PL+ K +K GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGKT-DKTGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P ++ + F L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPS-ELTFSQTIFSVDILARRLRELSFLNAGVRIVLRDERVNLENV-------YDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W + + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTTDADNGI---GVEVALQWNDSYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTRG+ Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLAGFRAALTRGLNSYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R R+ RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ H+++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYL 569 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ + + + + I R+KGLGEM A QL ET MD R +L+V I+ + + Sbjct: 738 FHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTIDDAI----EAD 793 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 + LMG + R FI+E A D + Sbjct: 794 RMFSCLMGDDVEPRRAFIEENALNAD-IDA 822 >gi|330952329|gb|EGH52589.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7] Length = 727 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P + F Sbjct: 121 GVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 >gi|299066932|emb|CBJ38127.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum CMR15] Length = 661 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 249/673 (36%), Positives = 357/673 (53%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + GY I+ Sbjct: 2 SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKWIQ 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L V V R ++ + FS G + + E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKKHGTRVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETIEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322 L S I + E+ W +AW +E SY N I Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRLGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI +++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPTDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI + ++ + PPL+R+ +G K +YA D+ + I ++ +K G +G Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLKEG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V I + + T +N LMG +A Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--AEQTVHVMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|307729036|ref|YP_003906260.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003] gi|307583571|gb|ADN56969.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia sp. CCGE1003] Length = 661 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 241/674 (35%), Positives = 358/674 (53%), Gaps = 42/674 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + GY Sbjct: 1 MSTKKPNAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP+ +EI+ T LHAGGKFD Y S Sbjct: 58 RQITVTLHADHSVSVEDDGRGIPFGLHPE-EGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITF 209 GGLHGVG+SV NALS L VTV R + + F+ G PLE + + K GTR+T Sbjct: 117 GGLHGVGVSVTNALSTRLDVTVWRDGKVAALSFANGDVAKPLEVRAAAKGEKKSGTRVTA 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 +PK F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WANPKYFDSPN-LPLGELQRLLRSKAVLLPGVEVTLINEK-------TGEQQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEIFTGKT-------EKKGTHRGTVEWAIAWCEENP-EITSYCNT 321 + YL + L+ + E+ W +AW EE P SY N Sbjct: 229 RGYLLEGMNGSDLLIPLFEGERYAENSRANEETFAEGEGAAWVVAWSEEGPLTRESYVNL 288 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F Sbjct: 289 IPTPAGGTHESGLREGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQ 348 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA + V + R + +L Q+ KL + VI++++ R R ++ E + Sbjct: 349 GQIKERLNSRDAVKLVASFARPALELWLNQHVEHGKKLADLVIKQAQARTRAGQKVEKRK 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SSGVAVL--PGKLTDCESTEISRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTW 466 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLT 557 +++ N ++ D+ A+G S + +LRY K+ I++DADVDG+HI LLLT Sbjct: 467 ETERDRLFANNEVHDISVAIGVDPHSPDDKVDLSNLRYGKICILSDADVDGSHIQVLLLT 526 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--K 609 F++ LIE+ H+ + PPLFR+ +G K +YA DE + IL++ +K G Sbjct: 527 LFFKHFPQLIERGHVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAILDKLRKDGVRD 586 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 + ISRFKGLGEM A QL +T M+ + R L V + + + LMG +A Sbjct: 587 TQWSISRFKGLGEMSAEQLWDTTMNPDTRRLTPVALGELDYDTTVA--RMTMLMGKGEAA 644 Query: 669 ERFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 SRRSWLEEKGNEVE 658 >gi|254713300|ref|ZP_05175111.1| DNA gyrase subunit B [Brucella ceti M644/93/1] gi|254716346|ref|ZP_05178157.1| DNA gyrase subunit B [Brucella ceti M13/05/1] gi|261218128|ref|ZP_05932409.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1] gi|261321025|ref|ZP_05960222.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260923217|gb|EEX89785.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1] gi|261293715|gb|EEX97211.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 813 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 241/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEESIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 592 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 593 LRSVVED--ARTLRQL 606 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|328541628|ref|YP_004301737.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1] gi|326411380|gb|ADZ68443.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1] Length = 817 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 237/581 (40%), Positives = 342/581 (58%), Gaps = 16/581 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 +PD+ A + +Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 4 TSLPDNTPPAGAADPQDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 63 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD Sbjct: 64 IDEALAGHADRVTVTLNADGSVTVTDNGRGIPTDVHA-TEGVSAAEVIMTQLHAGGKFDQ 122 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS L + + R +F G +PL + ++GT Sbjct: 123 NSYKVSGGLHGVGVSVVNALSTWLELRIWRAGKEHFIRFRHGDAEAPLVEVGPSNGRKGT 182 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF P P+ F FD A L + A+L+ V+ + + + EK ++ Sbjct: 183 EVTFLPSPETFTRI-EFDFATLEHRLRELAFLNSGVRILLTDRRGVEEKAVE-----LFY 236 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + T E+ G TVE A+ W + E + N I Sbjct: 237 EGGLEAFVRYLDRAKHPLVEAPITVGAERDGI---TVEAALWWNDSYHEQVLCFTNNIPQ 293 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + YA+ + K +S+ DD +LSV + +P+F+ Q Sbjct: 294 RDGGTHLAGFRAALTRQVTGYADSSGLLKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQ 353 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS + + VEN + +L +NP A ++ V+E + R RK RE RK Sbjct: 354 TKDKLVSSEVRPVVENVINQALAEWLEENPARARAVVSKVVEAASAREAARKARELTRRK 413 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV Sbjct: 414 GALDIASLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 473 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ +I L+ ALG + + LRY K+IIMTDADVDGAHI +LLLTFF+ Sbjct: 474 ARFDKMLSSNEIGTLITALGTGIGKEEFNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFF 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G Y D+ + L Sbjct: 534 RQMPELIERGHIYIAQPPLYKVKRGQSEQYLKDQTALEDYL 574 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 Q +L G+ I + R+KGLGEM QL ET +D N R+LL+V++ D D Sbjct: 733 QALLATVFAFGRKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----KEADDADD 788 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + + R +FIQ+ A + ++ Sbjct: 789 IFTKLMGDEVEPRREFIQDNALSVANLD 816 >gi|325265954|ref|ZP_08132640.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella denitrificans ATCC 33394] gi|324982592|gb|EGC18218.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella denitrificans ATCC 33394] Length = 800 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 230/572 (40%), Positives = 334/572 (58%), Gaps = 19/572 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEPTQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V ++ + +T+ DNGRGIP HPK +S E+I+T LHAGGKFDN++Y++SGGLH Sbjct: 62 NITVCINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214 GVG+SVVNALSD L +T+ R+ +F RG + PL+ + +K GTR+ F Sbjct: 121 GVGVSVVNALSDWLKLTIWREGKEHFVEFKRGETVEPLKVVGECSPDKHGTRVQFLASED 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 FG + L K + ++L+ VK ++ + E F GG+ ++ Sbjct: 181 TFGLV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKHENFAESGGVVGFVN 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 ++ + ++F EK G TVE A+ W + + + N I +GGTH + Sbjct: 233 YITGSKKPLHEKVFYTIGEKDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 LR A+TR I +Y E + K I DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 290 LRAAMTRTINQYIEANEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 V L +L +NP +A + ++E + R RK RE+ R+ + L LP Sbjct: 350 IAPVVNEVLSQALHDFLEENPQDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A E++ + Sbjct: 410 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLAS 469 Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 470 QEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVER 529 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y DE+ K + L Sbjct: 530 GYIYIAQPPLYKAKAGKQERYLKDEQEKDEFL 561 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ + + + I R+KGLGEM QL ET MD R LL+V I + Sbjct: 715 FEEALDSLLQSAQKGMTIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAI----AAD 770 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ LMG + + R FI+ A ++ Sbjct: 771 ETFVTLMGDEVEPRRAFIETNALVAQNIDA 800 >gi|6116692|dbj|BAA85765.1| DNA gyrase subunit B [Pseudomonas aeruginosa] Length = 807 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 228/570 (40%), Positives = 346/570 (60%), Gaps = 19/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S ++ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 SITIHTDESITVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL +T+ R N ++ Q + G P + + + GT + F+P P+ F Sbjct: 121 GVSVVNALSHELRLTIRRHNKVWEQVYHHGGSAVPTARSGRRTDGSGTEVHFKPSPETFS 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ ++E F + GGLK +++ Sbjct: 181 NIH-FSWDILAKRIRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEYLN 232 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ ++ + E+ G VE A+ W + + + N I +GGTH +G R Sbjct: 233 TNKTAVNEVFHFNVQREEDGV---GVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR 289 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 350 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 409 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q+ Sbjct: 410 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQE 469 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ + Sbjct: 470 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D++ ++ + Sbjct: 530 IYIAQPPLYKVKRGKQEQYIKDDQAMEEYM 559 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 11/106 (10%) Query: 582 ITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + +G + + A + L+ G + I R+KGLGEM QL ET MD N R Sbjct: 710 VQKGERKRPISAFKDG-----LDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRR 764 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +L+V I + N LMG + R FI+ A + ++ Sbjct: 765 MLKVTIEDAI----AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 806 >gi|325135020|gb|EGC57648.1| DNA gyrase, B subunit [Neisseria meningitidis M13399] Length = 796 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 341/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + ++ E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + S+L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGSELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 7/106 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G +D + + L+ + + I R+KGLGEM QL ET MD R L Sbjct: 698 KLYKGDNE---YDIDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRL 754 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 L+V I + + LMG + + R FI+ A ++ Sbjct: 755 LKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|304389025|ref|ZP_07371071.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria meningitidis ATCC 13091] gi|304337006|gb|EFM03194.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria meningitidis ATCC 13091] Length = 796 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|148560385|ref|YP_001258162.1| DNA gyrase subunit B [Brucella ovis ATCC 25840] gi|148371642|gb|ABQ61621.1| DNA gyrase, B subunit [Brucella ovis ATCC 25840] Length = 810 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 242/616 (39%), Positives = 354/616 (57%), Gaps = 26/616 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADCRHADVKEQE-----LHYDGGLVEFVKY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD ILSV + +P+F+ QTK KLVS + Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLAS-Q 627 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRAGPD 589 Query: 628 LKETAMDANKRTLLRV 643 L+ D RTL ++ Sbjct: 590 LRSVVED--ARTLRQL 603 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809 >gi|260771248|ref|ZP_05880175.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972] gi|260613845|gb|EEX39037.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972] Length = 602 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 242/622 (38%), Positives = 341/622 (54%), Gaps = 24/622 (3%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MY TD +HL EVIDN++DE +AGYA ++V L + L V+D+GRG+PV+ HP+ Sbjct: 1 MY---TDTTRPNHLGQEVIDNSVDEALAGYATKVQVILHADQSLEVIDDGRGMPVDIHPE 57 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 S +E+IL LHAGGKF N Y+ SGGLHGVGISVVNALS + VTV R ++ Sbjct: 58 -EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIA 116 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G +S L R RGT + F P+ K F F RL+ ++KA L ++ Sbjct: 117 FEHGDKVSDLTVTGTCGRRNRGTSVHFWPETKYFDSPN-FSVTRLINNLRAKAVLCPGLE 175 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 +S E +++ GLK YL ++ +L+ E FTG+ + T Sbjct: 176 ITFSDKVNNNE-------YRWFYEDGLKDYLAEGVKGYTLLPEEPFTGEFSAETEA-ATW 227 Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDD 361 SY N I T +GGTH +GLR L ++++ E R + + +D Sbjct: 228 AVIWLPEGGEMITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRGVKLTGED 287 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + +LSV +++P+FAGQTK +L S V ++D F +L + P A +L E Sbjct: 288 VFDRCAYVLSVKMQDPQFAGQTKERLSSRQTAAFVSGVVKDAFSLWLNEKPQLAEQLAEV 347 Query: 422 VIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQA 481 I + R+R ++V RK LPGKL DCSQ TELF+VEGDSAGGSAKQA Sbjct: 348 CIANAHRRMR--AAKKVVRKKVASGPALPGKLTDCSQQDLSRTELFLVEGDSAGGSAKQA 405 Query: 482 RNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIM 541 R+R QA++PLRGKILN +++ +Q++ D+ ALG S E LRY KV I+ Sbjct: 406 RDREFQAIMPLRGKILNTWEVSGDQVLGSQEVHDISVALGIDPDSDNLET-LRYGKVCIL 464 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 DAD DG HIA+LL F + L+ + H+++ PPL+RI G + YA D+ K IL Sbjct: 465 ADADSDGLHIATLLCALFTRHFSALVREGHIYVAMPPLYRIDCGKEVFYALDDNEKDAIL 524 Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 E K K K+ + RFKGLGEM QL+ET MD N R L+++ I+ K T++ ++ Sbjct: 525 ERLAKK-KAKVNVQRFKGLGEMNPIQLRETTMDPNTRRLVQLTIDD----AKATEEMMDM 579 Query: 662 LMGTK-ADERFKFIQERASFID 682 L+G K AD+R ++Q + Sbjct: 580 LLGKKRADDRRNWLQSNGDLAE 601 >gi|261854634|ref|YP_003261917.1| DNA gyrase subunit beta [Halothiobacillus neapolitanus c2] gi|261835103|gb|ACX94870.1| DNA gyrase, B subunit [Halothiobacillus neapolitanus c2] Length = 817 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 227/588 (38%), Positives = 347/588 (59%), Gaps = 19/588 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + A N S YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SDNTPNDASQNAGQSSGYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + + V++ +G ++V DNGRGIPV+ H + S E+I+T LHAGGKFD Sbjct: 62 VDEALAGHCDTVTVTMHADGSVSVSDNGRGIPVDIHAE-EGVSAAEVIMTVLHAGGKFDQ 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALSDEL + + R + Q + G+P +PL + GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDELELDIYRGGHAYHQSYRLGVPQAPLAEVGATEK-SGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 I F P P IF D F L K + ++L+ ++ + + + FY+ Sbjct: 180 SIRFLPSPTIFTDVV-FHYDILAKRLRELSFLNSGIRVFLNDEIS-------GRADTFYY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GG++ +++ + +++I + + +K VE A+ W + E Y N I Sbjct: 232 EGGIRAFVEHLNKGKTVIHKNVLSFSGQKDSVL---VELALQWNDSYQENLFCYTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + Y E K +S +D V ++SV + +P+F+ Q Sbjct: 289 RDGGTHLTGFRTALTRTLNDYMERAGILKKAKVSTSGEDWREGLVAVISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRK 441 TK KLVS + + VE+ + +L +NP EA + +IE + R R+ R RK Sbjct: 349 TKEKLVSSEVKSAVESLTSERLAEFLEENPQEALLITNKIIEAARAREAARRAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV Sbjct: 409 GALDIAGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEK 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALGC R + + LRY ++IIMTDADVDG+HI +LLLTFFY Sbjct: 469 ARFDKMLSSAEVGTLITALGCGIGREDFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFY 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++M +L+E+ H+++ PPL+++ +G + Y D+ + L + G Sbjct: 529 RQMKELVERGHIYIAQPPLYKVKKGKQEQYLKDDLALNQYLLQLAVDG 576 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 R+ +G KS H ++ ++ + G+ + I R+KGLGEM QL ET M+ R L Sbjct: 719 RVLRGEKSA---PITHFEQAIDWLMQEGRRGLGIQRYKGLGEMNPDQLWETTMNPETRRL 775 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 L+V I + S + LMG + R FI++ A ++ Sbjct: 776 LQVRIEDAIAS----DEIFTILMGDLVEPRRDFIEKFALSAVNID 816 >gi|319411305|emb|CBY91715.1| DNA gyrase subunit B [Neisseria meningitidis WUE 2594] Length = 796 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L I R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIISDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|17545695|ref|NP_519097.1| DNA topoisomerase IV subunit B [Ralstonia solanacearum GMI1000] gi|17427989|emb|CAD14678.1| probable dna topoisomerase iv (subunit b) protein [Ralstonia solanacearum GMI1000] Length = 661 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 248/673 (36%), Positives = 356/673 (52%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + GY I+ Sbjct: 2 SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKWIQ 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L V V R ++ + FS G + + E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVAVWRDGSVSTLAFSGGDVIEALATRRAERGEKKNGTRVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETLEWQYDQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEENPE-ITSYCNTI 322 L S I + E+ W +AW +E SY N I Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDRPGEEGFAFGEGASWVVAWTDEGSPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++ +D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMPEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ KL E VI +++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEFGKKLAELVIRQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPADSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI + ++ + PPL+R+ +G K +YA D+ + I ++ +K G +G Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKEGLKEG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V I + + T +N LMG +A Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--AEQTVHVMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|121634083|ref|YP_974328.1| DNA gyrase subunit B [Neisseria meningitidis FAM18] gi|120865789|emb|CAM09520.1| DNA gyrase subunit B [Neisseria meningitidis FAM18] gi|325133030|gb|EGC55703.1| DNA gyrase, B subunit [Neisseria meningitidis M6190] gi|325139102|gb|EGC61648.1| DNA gyrase, B subunit [Neisseria meningitidis ES14902] Length = 796 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/601 (38%), Positives = 338/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + SR + +L Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDSR-----TIEGEELAN 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|161830408|ref|YP_001595905.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331] gi|161762275|gb|ABX77917.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331] Length = 808 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ +G ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 62 HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + +++Q + G+P +PL K +K GT I F+P I Sbjct: 121 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 180 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 232 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 289 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 349 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 529 HIYIAQPPLYKVKKSKQEQYVK 550 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 710 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 765 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 766 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 807 >gi|82701138|ref|YP_410704.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196] gi|82409203|gb|ABB73312.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196] Length = 810 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 231/573 (40%), Positives = 342/573 (59%), Gaps = 19/573 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +S +Y + SI+IL+GL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AGY Sbjct: 10 QKSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYC 69 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGG 153 + I V + + +TV DNGRGIP +S EI++T LHAGGKFD+ +Y++SGG Sbjct: 70 DEISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGG 129 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L +++ R I +F G+P+ PL K +RGT + F Sbjct: 130 LHGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKT-ERRGTEVHFLASK 188 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IFGD + K + ++L+ VK + E E F F GG+K+++ Sbjct: 189 EIFGDI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE-------ETFAFVGGVKSFV 240 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +S++ IF EK R VE ++ W + ++ + N I +GGTH + Sbjct: 241 EYVNRTKSVLHPNIFYAAGEKD---RIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLT 297 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GLR A+TR + Y E + K I DD+ +LSV + EP+F+ QTK KLVS Sbjct: 298 GLRAAMTRTLNNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSS 357 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + + VE + +L+++P++A + +IE + R RK RE+ R+ + + L Sbjct: 358 EVRPVVEEIVSLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGL 417 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAKQ R+R QA++PL+GKILNV A +K+ + Sbjct: 418 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLIS 477 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I L+ ALG + +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +LIE Sbjct: 478 SQEIASLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 + H+F+ PPL++I G + Y D+ ++ L Sbjct: 538 RGHIFIAQPPLYKIKHGKQERYVKDDHELKQYL 570 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + K I R+KGLGEM +QL ET MD R LLR +I + Sbjct: 724 DFKQALDWLLEEVKKGIGTQRYKGLGEMNPAQLWETTMDPKVRLLLRAQIEDSI----AA 779 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+ A + ++ Sbjct: 780 DEIFTTLMGDIVEPRRAFIENNALGVRNLD 809 >gi|238028239|ref|YP_002912470.1| DNA topoisomerase IV subunit B [Burkholderia glumae BGR1] gi|237877433|gb|ACR29766.1| DNA topoisomerase (ATP-hydrolyzing) [Burkholderia glumae BGR1] Length = 660 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 236/673 (35%), Positives = 354/673 (52%), Gaps = 41/673 (6%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y +SI++L+GLEPV+ RPGMY T + H+ EVIDNA DE + G+ Sbjct: 1 MSTKKPAAAYSEASIKVLKGLEPVKQRPGMY---TRTENPLHIIQEVIDNASDEALGGHG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEIS 151 I V+L + ++V D+GRGIP HP +EI+ T LHAGGKFD Y S Sbjct: 58 KQITVTLHADQSVSVEDDGRGIPFGLHP-DEGVPVVEIVFTRLHAGGKFDKAAGGAYTFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITF 209 GGLHGVG+SV NAL+ L VTV R+ F+ G + P + + K GTR+ Sbjct: 117 GGLHGVGVSVTNALATRLDVTVWREGKCAELGFAHGDVVKPLVTQPAGRGEKKSGTRVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L ++ +SKA L V+ +K E++ + + GL Sbjct: 177 WPDGKYFDSPN-LPLGELQRLLRSKAVLLPGVEVVLVIEKS-------GERQSWKYEDGL 228 Query: 270 KTYLQTKLENRSLISSEI------FTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTI 322 + YL ++ L+ + + W +AW EE SY N I Sbjct: 229 RGYLLDEMNGSELLIPLFEGERFADSKSGDDSFADGEGASWVVAWSEEGSLTRESYVNLI 288 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + EL + + ++++D+ +LS + +P+F G Sbjct: 289 PTPAGGTHESGLRDGLYQAVKSFVELHNLQPKGVKLLAEDVFARVSFVLSAKVLDPQFQG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA + V + R + +L Q+ KL E VI++++ R R ++ E + Sbjct: 349 QIKERLNSRDAVKLVSSFTRPALELWLNQHVEHGKKLAELVIKQAQARTRAGQKVEKRKS 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 409 SGVAVL--PGKLTDCETQDITRNELFLVEGDSAGGSAKMGRDKEYQAILPLRGKVLNTWE 466 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE---EDLRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G +LRY K+ I++DADVDGAHI LLLT Sbjct: 467 TERDRLFANNEVHDISVAIGVDPHGPDDNVDLSNLRYGKICILSDADVDGAHIQVLLLTL 526 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LIE+ ++F+ PPLFR+ +G K +YA D+ + IL++ +K G Sbjct: 527 FFKHFPQLIERGNVFVARPPLFRVDAPARGKKPAQKLYALDDGELEAILDKLRKDGVRDT 586 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 + ISRFKGLGEM A QL +T M+ + R L+ V + + T + LMG +A Sbjct: 587 QWTISRFKGLGEMSAEQLWDTTMNPDTRRLMPVALGQLDYDA--TVSRMTMLMGKGEAAA 644 Query: 670 RFKFIQERASFID 682 R +++E+ + ++ Sbjct: 645 RRSWLEEKGNEVE 657 >gi|189218174|ref|YP_001938816.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4] gi|189185032|gb|ACD82217.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4] Length = 841 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 331/574 (57%), Gaps = 15/574 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +YDAS I LEGLE VR RPGMYIG TDE+ LHH EV+DN++DE +AGY + IE+++ Sbjct: 16 SYDASRIEKLEGLEAVRKRPGMYIGPTDERGLHHCIFEVLDNSIDEHLAGYCSRIELTIH 75 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G ++++DNGRGIPV+ HPKF +E++LT LHAGGKF Y+ SGGLHGVG V Sbjct: 76 VDGSVSILDNGRGIPVDPHPKF-KIPAVELVLTNLHAGGKFSQGVYKYSGGLHGVGAKCV 134 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ V V R ++ +F RG PLE K GT ITF+PDP+IF F Sbjct: 135 NALSEWFKVEVFRDGKVYRMEFRRGKTSKPLEVVGKTLK-TGTLITFKPDPEIFTQTLEF 193 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 + K + A+L+ ++ ++++ P F+F G+ ++ ++ Sbjct: 194 KTEIIAKRLRELAFLNPGLEILLLDERQLD--GSKPSSLRFFFKEGIAEFVSQFTQDLKP 251 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + +K V+ + + E +I Y N I +GG+H SGLR ALTR Sbjct: 252 LCPRPIVIQKQKDD---LIVDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLRTALTRS 308 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I +Y + ++ + +D+ V ILS+ P F QTK KLVS + + V + Sbjct: 309 INQYGKANNLFKEKDPPLSGEDVREGLVCILSLKHPSPSFESQTKVKLVSPEVEGVVSSL 368 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 + + +YL NP A +++E + + R +K RE RKTA+ LPGKLADCS Sbjct: 369 VYEGLMNYLELNPQVAKRIVEKALTAARAREAAKKAREAVRKTALSGGGLPGKLADCSVR 428 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 ELFIVEGDSAGGSAKQ RNR QA+LP+RGK++NV A +K+ NN++I ++ A Sbjct: 429 NPQEAELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKARLDKVLNNEEIQTIITA 488 Query: 520 LGCRTRSQYRE-----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 +G E E LRY K+I+MTDADVDG+HI +LLLTFFY++M +LI + H+++ Sbjct: 489 VGTGIGDGDGEGSFLLERLRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELINKGHVYI 548 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+ I + + Y ++E KIL E Sbjct: 549 AQPPLYLIGKKKEEYYVQNDEELNKILLEQGVKN 582 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 6/110 (5%) Query: 578 PLFR--ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PL++ + +G K D +ILE K++GK +EI RFKGLGEM QL ET MD Sbjct: 735 PLYKMIVKKGEKGEKQLDIFSIGQILEVVKENGKEGVEIKRFKGLGEMNPKQLYETTMDP 794 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 KR LL+VEI + + + LMG + + R +FI+E A + ++ Sbjct: 795 QKRKLLKVEIADAI----EAERVFVTLMGEEVEPRKRFIEENALHVRNLD 840 >gi|73542044|ref|YP_296564.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134] gi|72119457|gb|AAZ61720.1| DNA topoisomerase IV subunit B [Ralstonia eutropha JMP134] Length = 663 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 245/668 (36%), Positives = 349/668 (52%), Gaps = 34/668 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSIR+L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ + I Sbjct: 3 SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGFGSEIL 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155 V+L +G ++V D+GRGIPV HP+ +EI+ T LHA K Y SGGLH Sbjct: 60 VTLHRDGSVSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS +L V+V R + + FS G +P K E+ K GTR+ PD Sbjct: 119 GVGVSVTNALSTQLDVSVWRDGMMSTLTFSGGDVTAPLTSRKLERGEKKNGTRVQVWPDA 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267 K F A A L ++ +SKA L VK +K + ++ + G Sbjct: 179 KYFDS-AAIPQAELQRLLRSKAVLLPGVKVTLVIEKSGETQTWQYDQGLKGYLVEALAQG 237 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327 + E + G+ + A E P SY N I T G Sbjct: 238 SGAELVIPMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EEGAPVRESYVNLIPTPAG 296 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F GQ K + Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L S DA R V R + +L + KL E VI +++ R R ++ E + + + Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN ++ Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N ++ D+ A+G E D LRY K+ I++DADVDGAHI LLLT F++ Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534 Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 LIE ++ + PPLFR+ +G K +YA DE + I ++ K G +G +IS Sbjct: 535 PKLIEAGNVCVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLIKDGVKEGSWQIS 594 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM A QL ET M+ + R LL V + L T + +N LMG +A +R ++ Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVAL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652 Query: 675 QERASFID 682 +E+ + ++ Sbjct: 653 EEKGNEVE 660 >gi|308388431|gb|ADO30751.1| DNA gyrase subunit B [Neisseria meningitidis alpha710] gi|325130945|gb|EGC53672.1| DNA gyrase, B subunit [Neisseria meningitidis OX99.30304] gi|325137042|gb|EGC59638.1| DNA gyrase, B subunit [Neisseria meningitidis M0579] Length = 796 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 228/601 (37%), Positives = 339/601 (56%), Gaps = 24/601 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRG+P HPK +S E+I+T LHAGGKFDN++Y+ISGGLH Sbjct: 62 KITVTIHADHSVSVADNGRGMPTGIHPK-EGRSAAEVIMTVLHAGGKFDNNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD + +T+ R +F RG PL +K+GT + F + Sbjct: 121 GVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGD-SDKKGTTVRFLASTET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 FG+ + L K + ++L+ V + +++ + E F GG+ ++Q Sbjct: 180 FGNV-EYSFDILAKRIRELSFLNNGVDIELTDERD-------GKHESFALSGGVAGFVQY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 ++ + +IF EK G +VE A+ W + + + N I +GGTH + L Sbjct: 232 MNRKKTPLHEKIFYAFGEKDG---MSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTAL 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R +TR I Y E + K + DD+ +LSV + +P+F+ QTK KLVS + Sbjct: 289 RQVMTRTINSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEI 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 V + +L +NP EA + +++ + R RK RE+ R+ + L LPG Sbjct: 349 GPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSA Q R+R QA+LPL+GKILNV A EK+ +Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQ 468 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 469 EVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 ++++ PPL++ G + Y DE K + L + R + ++L + Sbjct: 529 YIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVSDGR-----TIEGAELAD 583 Query: 631 T 631 T Sbjct: 584 T 584 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 L++ G +D + + L+ + + I R+KGLGEM QL ET MD R Sbjct: 699 LYKGENG------YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVR 752 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 LL+V I + + LMG + + R FI+ A ++ Sbjct: 753 RLLKVRIEDAI----AADEVFVTLMGDEVEPRRAFIENNALIAQNIDA 796 >gi|212211673|ref|YP_002302609.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212] gi|212010083|gb|ACJ17464.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212] Length = 810 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 4 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ +G ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 64 HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + +++Q + G+P +PL K +K GT I F+P I Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809 >gi|66043275|ref|YP_233116.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae B728a] gi|289677553|ref|ZP_06498443.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae FF5] gi|63253982|gb|AAY35078.1| DNA gyrase, B subunit [Pseudomonas syringae pv. syringae B728a] gi|330937293|gb|EGH41304.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi str. 1704B] Length = 805 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P + F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|215918859|ref|NP_819060.2| DNA gyrase subunit B [Coxiella burnetii RSA 493] gi|206583743|gb|AAO89574.2| DNA gyrase subunit B [Coxiella burnetii RSA 493] Length = 810 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 230/562 (40%), Positives = 347/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 4 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ +G ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 64 HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + +++Q + G+P +PL K +K GT I F+P I Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809 >gi|153209811|ref|ZP_01947513.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|120575235|gb|EAX31859.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177'] Length = 808 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 231/562 (41%), Positives = 347/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ +G ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 62 HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + I++Q + G+P +PL K +K GT I F+P I Sbjct: 121 GVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 180 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 232 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 289 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 349 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 409 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 469 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 529 HIYIAQPPLYKVKKSKQEQYVK 550 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 710 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 765 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 766 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 807 >gi|189485008|ref|YP_001955949.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286967|dbj|BAG13488.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 830 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 241/580 (41%), Positives = 357/580 (61%), Gaps = 20/580 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 + S D Y AS+I+ILEGLE VR RP MYIG T + LHHL EV+DN++DEV+ Sbjct: 3 NKEVKNESSEKDGYSASNIQILEGLEAVRKRPAMYIGSTGSQGLHHLVYEVVDNSIDEVL 62 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFDNSTY 148 AGY I+V++ + +TV+D+GRGIPV+ H PKF S LEI+LT LHAGGKFD ++Y Sbjct: 63 AGYCKNIDVTVHSDNSITVLDDGRGIPVDPHPDPKFKGVSALEIVLTKLHAGGKFDKNSY 122 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG+S VNALSD L V R ++ Q +S+G PL P+++ V +RGT++T Sbjct: 123 KVSGGLHGVGVSCVNALSDLLKAEVYRNGKVYVQNYSKGKPLCPVKESG-VTEERGTKVT 181 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F PDP+IF + L + A+L+ + S +++ ++ F + GG Sbjct: 182 FHPDPEIFSV-MKYSFDTLANRLRELAFLNAGTRIRISDERDDDKE------HIFDYNGG 234 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 +KT++Q N+++I+ + EK + VE A+ + + I ++ N I T EG Sbjct: 235 IKTFVQYLNTNKNVINKDPIYFVKEKDDVY---VEIAMQYNDSYNELIFTFVNNINTVEG 291 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH SG R ALTR + +Y + + + + + +D+ I+S+ +++P+F GQTKT Sbjct: 292 GTHLSGFRSALTRSVNEYIKKNEVSKIKDLKLSGEDVREGLTAIISIKVQDPQFEGQTKT 351 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 +L + + + +++ + D +L +NP A+++L+ I +E R RK RE RK A+ Sbjct: 352 RLGNSEVEGIMQSVVGDALTTFLEENPGIASQILDKAINAAEAREAARKARELTRRKGAL 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADCS+ TELFIVEGDSAGGSAKQ R+RS QA+LPL+GKILNV + Sbjct: 412 DSASLPGKLADCSERDPQKTELFIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKSRL 471 Query: 505 EKIRNNQQIMDLVQALGCRT---RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 KI N +I L+ A+G + +RY K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 472 TKILANDEIRTLITAIGAGIGKEEQDFNINKVRYHKIIIMTDADVDGAHIRTLLLTFFYR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M L+++ ++++ PPL+++ + + +Y EE K L Sbjct: 532 QMPQLLDRGYIYIAQPPLYKVRRNKREMYLDSEEELDKFL 571 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%) Query: 578 PLFRI--TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 P++R+ T+ ++ +++E ++ G I R+KGLGEM QL ET MD Sbjct: 724 PVYRLQDTEKKVQGEIYELYSTTELIETIRELGNKGATIQRYKGLGEMNPEQLWETTMDI 783 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL++ + + +T LMG + + R FIQ A + ++ Sbjct: 784 KNRKLLQITLEDAI----ETDRVFTTLMGDQVEPRRLFIQTHALDVRNLD 829 >gi|170719191|ref|YP_001746879.1| DNA gyrase subunit B [Pseudomonas putida W619] gi|169757194|gb|ACA70510.1| DNA gyrase, B subunit [Pseudomonas putida W619] Length = 806 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 348/569 (61%), Gaps = 18/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVIIHTDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +TV R I+ Q + G+P +P+ + GT I F+P + F Sbjct: 121 GVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGE-SETTGTHIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGILLKDERSGKE-------EFFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++S++F +++ VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNSQVFHFNVQRED--GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 +LTR + Y E K +S DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 SLTRSLNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +L+E+ ++ Sbjct: 470 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 530 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 558 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAI----AA 775 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 776 DQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|308188123|ref|YP_003932254.1| topoisomerase IV, subunit B [Pantoea vagans C9-1] gi|308058633|gb|ADO10805.1| putative topoisomerase IV, subunit B [Pantoea vagans C9-1] Length = 606 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 237/624 (37%), Positives = 346/624 (55%), Gaps = 26/624 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MY TD +HL EVIDN++DE + G+A +EV L + L V+D+GRG+PV+ HP+ Sbjct: 1 MY---TDTTRPNHLGQEVIDNSVDEALGGHAKRVEVILHADQSLEVIDDGRGMPVDIHPE 57 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 +E+IL LHAGGKF N Y+ SGGLHGVGISVVNALS + VTV R I+ Sbjct: 58 -EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVTVRRNGEIYDMA 116 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G + L V + GTR+ F PD + F D F +RL + ++KA L V+ Sbjct: 117 FENGDKVQDLTVTGTVAKRNTGTRVHFWPD-ESFFDSPRFSVSRLSHLLKAKAVLCPGVE 175 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + E + + + GL YL + + + F G V Sbjct: 176 IVFKDKLNNTE-------QRWCYEDGLTDYLCEAVNGLPTLPEKPFVGSFAGDVE---AV 225 Query: 303 EWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIIS 359 +WA+ W E E SY N I T +GGTH +GLR L ++++ E R + + + Sbjct: 226 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 285 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+ +LSV +++P+FAGQTK +L S V ++D F +L QN A L Sbjct: 286 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNIQTAEMLA 345 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 E I ++ R+R ++V RK LPGKLADC+ + TELF+VEGDSAGGSAK Sbjct: 346 ELAISSAQRRMR--AAKKVVRKKLTSGPALPGKLADCTAQDLNKTELFLVEGDSAGGSAK 403 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QAR+R QA++PL+GKILN S+++ +Q++ D+ A+G S+ LRY K+ Sbjct: 404 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSEDL-SQLRYGKIC 462 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 I+ DAD DG HIA+LL F + L+ H+++ PPL+RI G + YA DE+ K+ Sbjct: 463 ILADADSDGLHIATLLCALFVKHFRSLVRNGHVYVAMPPLYRIDLGKEVYYALDEDEKEG 522 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE+ K+ KGK + RFKGLGEM QL+ET +D N R L+++ I++ + T + Sbjct: 523 VLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTISE--EDVDQTLRMM 579 Query: 660 NKLMGTK-ADERFKFIQERASFID 682 + L+ K +++R ++QE+ D Sbjct: 580 DMLLAKKRSEDRRNWLQEKGDLAD 603 >gi|163842400|ref|YP_001626804.1| DNA gyrase subunit B [Brucella suis ATCC 23445] gi|254705305|ref|ZP_05167133.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] gi|261756016|ref|ZP_05999725.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] gi|163673123|gb|ABY37234.1| DNA gyrase, B subunit [Brucella suis ATCC 23445] gi|261745769|gb|EEY33695.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] Length = 813 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 589 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|161618113|ref|YP_001592000.1| DNA gyrase subunit B [Brucella canis ATCC 23365] gi|260567232|ref|ZP_05837702.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161334924|gb|ABX61229.1| DNA gyrase, B subunit [Brucella canis ATCC 23365] gi|260156750|gb|EEW91830.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 813 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 589 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETIL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|23501039|ref|NP_697166.1| DNA gyrase subunit B [Brucella suis 1330] gi|23346904|gb|AAN29081.1| DNA gyrase, B subunit [Brucella suis 1330] Length = 810 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 236/597 (39%), Positives = 346/597 (57%), Gaps = 23/597 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 123 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 124 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 183 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 184 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 237 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 238 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 294 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 295 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 354 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 355 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 415 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 474 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 475 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 534 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 + H+++ PPL+++T+G S Y +E + L E ++ GEM A Sbjct: 535 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-----GEMRA 586 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 707 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 761 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 762 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 809 >gi|315125115|ref|YP_004067118.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913] gi|315013628|gb|ADT66966.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913] Length = 808 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 226/581 (38%), Positives = 350/581 (60%), Gaps = 18/581 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V DNGRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 TIHLDGSVSVRDNGRGIPTSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q ++ G+P +PL GT I F P + F + Sbjct: 121 SVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGD-SETNGTEIRFWPSGETFTNL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V S ++E + + F + GG++ +++ N Sbjct: 180 -DFHYDILAKRLRELSFLNSGVSIILSDERE------ENKSDHFKYEGGIRAFVEYLNRN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +F E++ +VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPVHKGVFHFTHERE-EDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRSAL 291 Query: 339 TRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 TR + Y + K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 292 TRTLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + F +L++NP++A ++ +I+ + R RK R RK A+ LPGKL Sbjct: 352 AVEQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 ADCQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 471 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFFY++M +++E+ ++ Sbjct: 472 ATLITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYI 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ L Sbjct: 532 YIAQPPLYKVKKGKQERYIKDDPALVDYLTSLALSNAALYT 572 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ ++ LE K I I R+KGLGEM +QL ET MD + R +L Sbjct: 711 IQRGEKT---KPVDNFVDALEWLIAESKRGIYIQRYKGLGEMNPNQLWETTMDPSARRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A + ++ Sbjct: 768 QVTIEDAV----AADQLFATLMGDQVEPRREFIETNALRVVNLD 807 >gi|306844398|ref|ZP_07476988.1| DNA gyrase, B subunit [Brucella sp. BO1] gi|306275211|gb|EFM56961.1| DNA gyrase, B subunit [Brucella sp. BO1] Length = 813 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 232/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 + H+++ PPL+++T+G S Y +E + L E Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETG 574 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R V A +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR---RKDKVEALSGP--VALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|254718345|ref|ZP_05180156.1| DNA gyrase subunit B [Brucella sp. 83/13] gi|265983305|ref|ZP_06096040.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13] gi|306839568|ref|ZP_07472374.1| DNA gyrase, B subunit [Brucella sp. NF 2653] gi|306842586|ref|ZP_07475236.1| DNA gyrase, B subunit [Brucella sp. BO2] gi|264661897|gb|EEZ32158.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13] gi|306287282|gb|EFM58768.1| DNA gyrase, B subunit [Brucella sp. BO2] gi|306405354|gb|EFM61627.1| DNA gyrase, B subunit [Brucella sp. NF 2653] Length = 813 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 232/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 8 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 67 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 68 LVTVTLNADGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL ++ GT ++F P P Sbjct: 127 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDT 186 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + K ++ GGL +++ Sbjct: 187 FS-MVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQE-----LHYDGGLVEFVKY 240 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 241 IDQSKKSLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 297 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K + + DD +LSV + +P+F+ QTK KLVS + Sbjct: 298 RGALTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 357 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 358 RPVVEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 417 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 418 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 477 Query: 513 IMDLVQALGCRTRSQYRE----EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 478 VGTLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 537 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 + H+++ PPL+++T+G S Y +E + L E Sbjct: 538 RGHIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETG 574 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 + PP+ R + K +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 710 FMEPPVLR--RKDKVE---SLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTL 764 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++N D ++LMG + + R +FIQ+ A + ++ Sbjct: 765 DPNVRSLLQVKVNDAT----DADSLFSRLMGDEVEPRREFIQDNALNVANLD 812 >gi|114704720|ref|ZP_01437628.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506] gi|114539505|gb|EAU42625.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506] Length = 812 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 235/571 (41%), Positives = 333/571 (58%), Gaps = 15/571 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A+ + V Sbjct: 12 SAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADHVTV 71 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ +G +V DNGRGIP H S E+I+T LHAGGKFD ++Y++SGGLHGVG+ Sbjct: 72 TLNADGSCSVSDNGRGIPTGIHS-GEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 130 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L + + ++ IF F+ G+ PL GT ITF P F Sbjct: 131 SVVNALSVWLKLKIRQKGKIFEMAFTHGVADGPLAVVGDAGEVTGTEITFMPSHDTFRGV 190 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + L + A+L+ V+ + + EK ++ GGL+ +++ Sbjct: 191 TAFDYSTLEHRLRELAFLNSGVRIILTDKRPADEKRIE-----LFYEGGLEAFVRYVDRA 245 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + + S + EK G TVE A+ W + + + N I +GGTH +G R AL Sbjct: 246 KKPLISTPISLTGEKDGI---TVEVAMWWNDAYNENVLCFTNNIPQRDGGTHLAGFRGAL 302 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + YAE + K +++ DD ILSV + +P+F+ QTK KLVS + + V Sbjct: 303 TRQVGGYAEASGLLKKEKVTLTGDDCREGLSCILSVKVPDPKFSSQTKDKLVSSEVRPVV 362 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 EN + + +NP EA ++ V+E + R R+ RK A+ LPGKLAD Sbjct: 363 ENLVNQGLSEWFEENPQEAKIVISKVVEAAAARDAARRARELTRRKGALDITSLPGKLAD 422 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ + QI Sbjct: 423 CQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFDRMLGSDQIGT 482 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ H+F+ Sbjct: 483 LITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHVFI 542 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 PPL+++T+G +S Y DE+ + L E Sbjct: 543 AQPPLYKVTRGKQSQYLKDEKALENYLIEGG 573 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L + G+ I R+KGLGEM + QL ET +D + RTL+RV++ D + Sbjct: 729 QLLITVFEVGRKGITTQRYKGLGEMNSDQLWETTLDPDARTLVRVKVQDAT----DADNL 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ+ A + ++ Sbjct: 785 FAQLMGDEVAPRREFIQDNALTVANLD 811 >gi|49474867|ref|YP_032908.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1] gi|49237672|emb|CAF26857.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1] Length = 810 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 233/572 (40%), Positives = 335/572 (58%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 +Q D+Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 6 TSQMEGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 66 TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+ G+ +PL+ + G+ I F P + Sbjct: 125 HGVGVSVVNALSVWLQLRIRRNGKIHEMSFTHGVADAPLKIVGDCGKESGSEIRFLPSSE 184 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F FD L + + A+L+ V + K ++ GGL +++ Sbjct: 185 TFT-MVEFDFETLERRLRELAFLNSGVHILLVDQRHADIKSVE-----LHYEGGLTEFVK 238 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + +EK G VE A+ W + ++ + N I +GGTH G Sbjct: 239 YIDQSKKALLDHPIYITSEKDG---MNVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLVG 295 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 296 FRSALTRQINGYAESSGIVKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 355 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA + V+E + R RK RE RK A+ LP Sbjct: 356 VRPIVENLVNEGLSAWLEEHPNEAKIVTSKVVEAAAAREAARKARELTRRKGALDITSLP 415 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 416 GKLADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 475 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 476 DMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 535 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++T+G Y +E ++ L Sbjct: 536 GHLYIAQPPLYKVTRGKSFQYIKNEAAFEEFL 567 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE +GK I + R+KGLGEM A QL ET ++ + R LL+V+IN D Sbjct: 727 SLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDAT----DADSL 782 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQ+ A + ++ Sbjct: 783 FSRLMGDEVEPRRAFIQDNALSVANLD 809 >gi|28867247|ref|NP_789866.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|213968438|ref|ZP_03396581.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1] gi|301384274|ref|ZP_07232692.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato Max13] gi|302063876|ref|ZP_07255417.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato K40] gi|302131959|ref|ZP_07257949.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850481|gb|AAO53561.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|213926726|gb|EEB60278.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1] gi|331017722|gb|EGH97778.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 805 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P + F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|127510939|ref|YP_001092136.1| DNA gyrase, B subunit [Shewanella loihica PV-4] gi|126636234|gb|ABO21877.1| DNA gyrase subunit B [Shewanella loihica PV-4] Length = 805 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 232/594 (39%), Positives = 354/594 (59%), Gaps = 30/594 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY N + Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCNDVI 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S ++I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHADGSVSVKDDGRGIPVAIHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +T+ R ++ Q ++ G P +P+ + N GT I F P + F D Sbjct: 121 VSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDATN-TGTEIRFWPSAETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLIDERDNKD-------EFFKYEGGISAFVDYLNL 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ EIF E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKEIFHFVQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAA 289 Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + YL++NP EA ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M +LIE+ ++F Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVF 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQ 627 + PPL+++ +G + Y D+ + L G GE+ SQ Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYLTNLALDG------------GEIHPSQ 571 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 L+ K + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 722 DALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAI----AADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRRDFIESNALNVANLD 804 >gi|212217692|ref|YP_002304479.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154] gi|212011954|gb|ACJ19334.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154] Length = 810 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 231/562 (41%), Positives = 347/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 4 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ +G ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 64 HIWVTIHADGSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + I++Q + G+P +PL K +K GT I F+P I Sbjct: 123 GVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809 >gi|270158399|ref|ZP_06187056.1| DNA gyrase B subunit [Legionella longbeachae D-4968] gi|289163357|ref|YP_003453495.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella longbeachae NSW150] gi|269990424|gb|EEZ96678.1| DNA gyrase B subunit [Legionella longbeachae D-4968] gi|288856530|emb|CBJ10325.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella longbeachae NSW150] Length = 805 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 229/576 (39%), Positives = 355/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 2 SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV D+GRGIPV+ H K +S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 FVTIHSDESITVKDDGRGIPVDIH-KEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+TV R I Q++ G+P +P+ + GT+I F+P F Sbjct: 121 GVSVVNALSEELHLTVRRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSADTFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ ++ F++ GG+K +++ Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIKAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 +N+++I +F+ EK+ VE ++ W + E + N I +GGTH +G R Sbjct: 232 KNKNVIMPIVFSMTAEKENI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD ILSV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNNYIESEGYAKKAKVSPTGDDAREGLTAILSVKVPDPKFSSQTKDKLVSSEVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+++ + F+ +L++NP A ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 349 VVESSVAEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +LIE+ ++ Sbjct: 469 ATLITALGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E + L + G Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFEYLTQSALDG 564 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + E ++ L+ + K I R+KGLGEM QL ET MD R +L Sbjct: 708 IKRGDKELAV---ESFEQALDWLMEEAKRGQTIQRYKGLGEMNPEQLWETTMDPTVRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R +FI+ A +++ Sbjct: 765 QVNIEDAV----AADAIFTTLMGDNVEPRREFIEFNALEAENID 804 >gi|15606321|ref|NP_213700.1| gyrase B [Aquifex aeolicus VF5] gi|4033398|sp|O67137|GYRB_AQUAE RecName: Full=DNA gyrase subunit B gi|2983522|gb|AAC07098.1| gyrase B [Aquifex aeolicus VF5] Length = 792 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 220/581 (37%), Positives = 335/581 (57%), Gaps = 18/581 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 Y A +I+ + GLE VR+RP MYIG E+ LHHL E++DNA+DE +AGY Sbjct: 2 KKRQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGY 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A I V++ + +TV D+GRGIPV+ HP+ K +E++ T L AGGKF+ Y SGG Sbjct: 62 ARNISVTIHRDNSVTVEDDGRGIPVDIHPE-TGKPAVEMVFTMLGAGGKFEKKVYTYSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG SVVNALS+ L V V R I+ F RG + PL + + RGT+++F+PDP Sbjct: 121 LHGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKK-RGTKVSFKPDP 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + K + AYL+ VK + ++ + + F G++ + Sbjct: 180 EIFETT-EIKFDIVEKRVRELAYLNPEVKFELTDERL-------GKHLIYKFDRGIEELV 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + E + + +I + EK+G V+ A + ++ I S+ N I T EGGTH + Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVI---VDIAFQYVKDYKERIESFVNNIKTVEGGTHVT 288 Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R L++ + + A+ + + + +D+ +++ + P+F GQTKTKL + Sbjct: 289 GFRSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQ 348 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + ++ VE+ D Y + ++E IE + R +K +E V RK+ + + L Sbjct: 349 NVKQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVL 408 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADCS+ E+F+VEGDSAGGSAKQAR+R QA+LPLRGKI+NV A +K+ + Sbjct: 409 PGKLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLS 468 Query: 510 NQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 N +I +V ALGC + LRY K+I+MTDADVDG+HI +LLLTFFY+ M L+E+ Sbjct: 469 NDEIKAIVSALGCGIGEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEE 528 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKI-LEEFKKHGK 609 ++++ PPL+R+ +G K +Y D++ + L E ++ G+ Sbjct: 529 GYVYIAEPPLYRVKKGKKEIYIKDDKEFEHFLLNEIREKGR 569 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +I ++F + +E+ R+KGLGEM QL ET M+ R L +V+I + Sbjct: 709 EIYDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIED----AAEADRI 764 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + + Sbjct: 765 FTILMGEQVEPRREFIEAYAKEVKHLD 791 >gi|90421533|ref|YP_529903.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18] gi|90103547|gb|ABD85584.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18] Length = 813 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 247/586 (42%), Positives = 337/586 (57%), Gaps = 16/586 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82 + P + A+ Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+ Sbjct: 2 TEPARQPIAEPEASAPVE--YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 59 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DNA+DE +AG+A +EV L+ +G +TV D+GRGIPV H K S E+I+T LHAGGK Sbjct: 60 DNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVGIH-KGEGISAAEVIMTQLHAGGK 118 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 FD ++Y++SGGLHGVG+SVVNALS +L + V R +F+ G ++PL K Sbjct: 119 FDQNSYKVSGGLHGVGVSVVNALSSKLQLRVWRDGKEHFIEFAHGDAVAPLVVVGDSNGK 178 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 RGT +TF P+ F +D A L + A+L+ V S + EK EE Sbjct: 179 RGTEVTFLASPETF-THIEYDFATLEHRLRELAFLNSGVTIVLSDLRHPVEKR-----EE 232 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + GG++ +++ N+ + E G VE A+ W + E + N Sbjct: 233 MMYRGGVEEFVKYLDRNKKAMVPAPIMIAAELNGI---GVEAALWWNDSYHENVLCFTNN 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381 I +GGTH +G R ALTR + YA++ K I++ DD +LSV + +P+F+ Sbjct: 290 IPQRDGGTHLAGFRGALTRQVNGYADVIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440 QTK KLVS + + VEN L + + ++P EA ++ VIE R RK RE R Sbjct: 350 QTKDKLVSSEVRPVVENVLNEALAAWFEEHPAEAKIIVGKVIEAGAAREAARKARELTRR 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 410 KGALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVE 469 Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A +K+ ++QI L+ ALG R + LRY K+I+MTDADVDGAHI +LLLTFF Sbjct: 470 RARFDKMLGSEQIGTLITALGTGIGRDDFDISKLRYHKIILMTDADVDGAHIRTLLLTFF 529 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 +++M LIE L++ PPL+++T+G Y DE + L E Sbjct: 530 FRQMPSLIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 575 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM QL T +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPEQLWHTTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812 >gi|94266205|ref|ZP_01289914.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] gi|93453212|gb|EAT03670.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] Length = 804 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 232/570 (40%), Positives = 337/570 (59%), Gaps = 17/570 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N++ + +Y A I++L GLE VR RP MYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 7 NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFEGLHHLVYEVVDNSIDEALAGHCSR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L +G ++V DNGRGIPV HP S LE+++ TLHAGGKFD+STY++SGGLHG Sbjct: 67 IAVTLHKDGSVSVEDNGRGIPVGMHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS + R I Q + GI S +E + G+RITF PDP+IF Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGIKESEVEVVGET-EHSGSRITFLPDPEIF 184 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD + + A+L+ VK ++ AE F+F GGL+++++ Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTGAEDE-------FHFKGGLRSFVEHL 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335 NR+ + +E + EK VE + E N + Y N I T EGG+H G R Sbjct: 238 NRNRTPVHAEPIFIEGEKDDVQ---VEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFR 294 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALT+ I +YA + + + DD+ ++SV + P+F GQTKTKL + + + Sbjct: 295 AALTKCINRYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVK 354 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR-KLRLPGK 452 VE + YL ++P EA K+L ++ + R R+ ++++RK + L K Sbjct: 355 WIVEGICHEKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A ++I N+++ Sbjct: 415 LAECQSKKPEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEE 474 Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I ++ ALG + + + LRY K+IIMTDADVDGAHI +LLLTFFY++M LIEQ Sbjct: 475 IKQVIAALGTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGR 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPLFR+++G K + D++ L Sbjct: 535 VYIGQPPLFRLSRGKKEQFFLDDDSLNNFL 564 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 F++ + A +++L + + R+KGLGEM QL T M+ R Sbjct: 705 FQVAVKNQQHSA---ADWRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRI 761 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V I + + LMG K + R +FIQ A + + Sbjct: 762 LLQVRIED----AEKADEIFTTLMGDKVEPRREFIQAHALEVSSLD 803 >gi|298484612|ref|ZP_07002717.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160869|gb|EFI01885.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 805 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFNEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|320355370|ref|YP_004196709.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032] gi|320123872|gb|ADW19418.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032] Length = 803 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 231/569 (40%), Positives = 335/569 (58%), Gaps = 16/569 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 ++ +Y A I++L+GLE VR RP MYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 2 SELTETSYGAEQIKVLDGLEAVRKRPSMYIGNTGVEGLHHLIYEVVDNSIDEALAGHCDQ 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I + + + +TV DNGRGIPV+ HP N S LE+++TTLHAGGKFD+STY++SGGLHG Sbjct: 62 ISIVIHEDNAVTVEDNGRGIPVDMHP-TENMSALELVMTTLHAGGKFDHSTYKVSGGLHG 120 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS V R I+ Q + G+ S LE + GT I+F+PDP IF Sbjct: 121 VGVSVVNALSVRTVAQVQRNGKIYRQTYEYGMRTSELEVIG-TSEQTGTSISFKPDPSIF 179 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ + + A+L+ + +++ AE F+F GG+ +Y++ Sbjct: 180 TETTVFEYEIVKNRMRELAFLNKNIHITLKDERDGAENS-------FHFDGGIVSYVEYL 232 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 NR+ + + E+ V+ + + + E + N I T EGG+H +G R Sbjct: 233 NRNRTTVHPDPILISGERDTVQ---VDICLQYFDGYSERLFSFVNNINTKEGGSHVAGFR 289 Query: 336 VALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALT+ I +YA + + DD+ ++SV + P+F GQTKTKL + + + Sbjct: 290 AALTKCINRYASDDIIPKHLKEKMGGDDVREGLTCVISVRVPNPQFEGQTKTKLGNSEVK 349 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKL 453 VE+ + YL QNP A +L +E + R RK R+++R + + + GKL Sbjct: 350 SIVESLCNEKLGAYLEQNPAVARGILNKAVEAARAREAARKARDLSRTKSNISVMMAGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 A+C ELFIVEGDSAGGSAKQ R+R+ QA+LPLRGKI+NV A +KI ++++I Sbjct: 410 AECQSKNPAERELFIVEGDSAGGSAKQGRDRAIQAILPLRGKIMNVEKARFDKILDSEEI 469 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 LV +LG S+ + E LRY K+IIMTDADVDGAHI +LLLTFFY++M LIE H+ Sbjct: 470 KQLVASLGTGIGSEEFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIENGHV 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+R+ +G K Y +EE L Sbjct: 530 YIGQPPLYRLGKGKKEQYFLNEEELNAYL 558 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++E ++ + R+KGLGEM QL +T M+ RTL++V+I+ ++ T D Sbjct: 719 HRLIELVREETFKGSHLQRYKGLGEMNPEQLWDTTMNPTNRTLIQVKIDD----VEVTDD 774 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG K + R +FIQ A + D+ Sbjct: 775 MFTTLMGDKVEPRREFIQNHALEVADLD 802 >gi|94264231|ref|ZP_01288026.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] gi|93455342|gb|EAT05546.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] Length = 804 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 231/570 (40%), Positives = 337/570 (59%), Gaps = 17/570 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N++ + +Y A I++L GLE VR RP MYIG T + LHHL EV+DN++DE +AG+ + Sbjct: 7 NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFEGLHHLVYEVVDNSIDEALAGHCSR 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V+L +G ++V DNGRGIPV HP S LE+++ TLHAGGKFD+STY++SGGLHG Sbjct: 67 IAVTLHKDGSVSVEDNGRGIPVGMHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS + R I Q + G+ S +E + G+RITF PDP+IF Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGLKESEVEVVGET-EHSGSRITFLPDPEIF 184 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + FD + + A+L+ VK ++ AE F+F GGL+++++ Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTGAEDE-------FHFKGGLRSFVEHL 237 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLR 335 NR+ + +E + EK VE + E N + Y N I T EGG+H G R Sbjct: 238 NRNRTPVHAEPIFIEGEKDDVQ---VEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFR 294 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALT+ I +YA + + + DD+ ++SV + P+F GQTKTKL + + + Sbjct: 295 AALTKCINRYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVK 354 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIR-KLRLPGK 452 VE + YL ++P EA K+L ++ + R R+ ++++RK + L K Sbjct: 355 WIVEGICHEKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A ++I N+++ Sbjct: 415 LAECQSKKPEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEE 474 Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I ++ ALG + + + LRY K+IIMTDADVDGAHI +LLLTFFY++M LIEQ Sbjct: 475 IKQVIAALGTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGR 534 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPLFR+++G K + D++ L Sbjct: 535 VYIGQPPLFRLSRGKKEQFFLDDDSLNNFL 564 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 F++ + A +++L + + R+KGLGEM QL T M+ R Sbjct: 705 FQVAVKNQQHSA---ADWRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRI 761 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V I + + LMG K + R +FIQ A + + Sbjct: 762 LLQVRIED----AEKADEIFTTLMGDKVEPRREFIQAHALEVSSLD 803 >gi|320321691|gb|EFW77790.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. B076] Length = 807 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 721 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 776 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806 >gi|258593678|emb|CBE70019.1| DNA gyrase subunit B [NC10 bacterium 'Dutch sediment'] Length = 826 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 347/574 (60%), Gaps = 17/574 (2%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 S + YDA+ IRILEGLE VR RP MYIG T LHHL EV+DN++DE +AGY + + Sbjct: 21 PSQGEVYDAAQIRILEGLEAVRKRPAMYIGSTGFDGLHHLVYEVVDNSVDEALAGYCDQV 80 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V++ + ++V+DNGRGIPV+ H + + +E+++TTLHAGGKFDNS Y++SGGLHGV Sbjct: 81 DVTIHSDNSVSVLDNGRGIPVDIHEQ-TGRPAVEVVMTTLHAGGKFDNSAYKVSGGLHGV 139 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNAL+++L V + R + Q++ RG P LE+ K R GTR+TF PD +IF Sbjct: 140 GLSVVNALAEQLEVEIWRDGKRYLQQYERGKPTGDLEEVGKARK-TGTRVTFIPDSEIFE 198 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D+ F L + A+L+ ++ + ++ I E EFY+ GG++++++ Sbjct: 199 DRT-FSLDTLSNRLRELAFLNKGLRIRLTDER-------INEAREFYYTGGIRSFVELLN 250 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 EN+ ++ + + ++ T VE AI + + E S+ N I T +GGTH G R Sbjct: 251 ENKVVLHPKPIHIEVQRDPT---VVEVAIQYNDGYGETVFSFANNINTHDGGTHLIGFRS 307 Query: 337 ALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I YA + + + DD+ ++SV + P+F GQTK +L + D + Sbjct: 308 ALTRTINSYAASHDLLKNLKATVTGDDIREGLTAVISVKLPNPQFEGQTKARLNNPDMKG 367 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 VE + + YL +NP+ +++E E + R RK +E+ R+ + LPGKL Sbjct: 368 LVETIVNEKLAEYLEENPVIGRRIVEKATEAARAREAARKAKELARRKGPLDGDGLPGKL 427 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADCS+ EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILN A ++K+ ++ +I Sbjct: 428 ADCSEKDPALCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNTERARADKMLSSAEI 487 Query: 514 MDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALG ++ LRY ++I+MTDADVDG HI +LLLTFF++ + +++E HL+ Sbjct: 488 RVLISALGAGIDPEFDLGRLRYHRIILMTDADVDGEHIRTLLLTFFFRHLREIVEGGHLY 547 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 + PPL++I +G Y ++ ++ L E Sbjct: 548 IAQPPLYKIKRGKAERYLKNDRAMEEFLLETAGE 581 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L++ + + I R+KGLGEM QL +T M+ RTLLRV + + + Sbjct: 743 DLLDKSMTLARKGLTIQRYKGLGEMNPEQLWQTTMNPESRTLLRVAVEDAV----AAEQI 798 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 799 FTTLMGDQVEPRRLFIERHALEASNLD 825 >gi|300692061|ref|YP_003753056.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07] gi|299079121|emb|CBJ51788.1| DNA topoisomerase IV, subunit B [Ralstonia solanacearum PSI07] Length = 661 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 252/673 (37%), Positives = 359/673 (53%), Gaps = 45/673 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y +SI++L+GLEPV+ RPGMY T H+ EVIDNA DE + GY LI+ Sbjct: 2 SKTPQYSEASIKVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNAADEALGGYGKLIQ 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLH 155 V+L +G ++V D RGIPV HP+ +EI+ T LHAGGKFD Y SGGLH Sbjct: 59 VTLHKDGSVSVEDEARGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGRGGAYAFSGGLH 117 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS L VTV R + + FS G + + E+ K GTR+ PD Sbjct: 118 GVGVSVTNALSTRLEVTVWRDGGVSTLTFSGGDVIETLATRRAERGEKKNGTRVRVWPDG 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + A L ++ +SKA L VK + +K E E+ + GL+ YL Sbjct: 178 KYFDSEN-IPQAELQRLLRSKAVLLPGVKVSLTIEKS-------GETLEWQYEQGLRGYL 229 Query: 274 QTKLENRSLISSEIFTGK----------TEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322 L S I + E+ W +AW EE P SY N I Sbjct: 230 IESLAQGSGADPVIPLFEGEHFADPDKLGEEGFAFGEGASWVVAWTEEGAPVRESYVNLI 289 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAG 381 T GGTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F G Sbjct: 290 PTPAGGTHESGLREGLFQAVKSFVEMHALCPKGVKLMSEDVFARASFVLSAKVLDPQFQG 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 Q K +L S DA R V R + +L Q+ +L E VI +++ R R ++ E + Sbjct: 350 QIKERLNSRDAVRLVSTFSRPALELWLNQHVEHGKRLAELVIRQAQARTRAAQKVEKKKG 409 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + L PGKL DC + ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 410 SGVAVL--PGKLTDCESDDVSRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWE 467 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTF 558 +++ N ++ D+ A+G D LRY K+ I++DADVDGAHI LLLT Sbjct: 468 TERDRLFANNEVHDIAVAIGVDPHGPNDSVDLSGLRYGKICILSDADVDGAHIQVLLLTL 527 Query: 559 FYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KG 610 F++ LI + ++ + PPL+R+ +G K +YA D+ + I ++ +K G +G Sbjct: 528 FFKHFPQLIGRGNVCVARPPLYRVDAPARGKKPAQKLYALDDGELEAIEDKLRKDGLKEG 587 Query: 611 KIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADE 669 +ISRFKGLGEM A QL ET M+ + R LL V I + + T +N LMG +A Sbjct: 588 SWQISRFKGLGEMSAEQLWETTMNPDTRRLLPVSIGEPG--PEQTVHVMNMLMGKGEAGA 645 Query: 670 RFKFIQERASFID 682 R +++ R + ++ Sbjct: 646 RRTWLEARGNEVE 658 >gi|257485596|ref|ZP_05639637.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 805 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|330987022|gb|EGH85125.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str. M301315] Length = 805 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|225874303|ref|YP_002755762.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225791292|gb|ACO31382.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 870 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 223/593 (37%), Positives = 349/593 (58%), Gaps = 13/593 (2%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVI 82 K P ++Q+ Y + +I++LEGLE VR+RP MYIG T E LHHL EV+ Sbjct: 2 STKELAPDTQPLPSSQAQKTTYTSDNIKVLEGLEAVRLRPAMYIGSTGEMGLHHLVYEVV 61 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAG 140 DN++DE +AGYA IEV++ + +TVVD+GRGIPV+ ++++LT LHAG Sbjct: 62 DNSVDEALAGYATRIEVTIHVDNSITVVDDGRGIPVDEKTLDNGEKMPAVQVVLTKLHAG 121 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKFD+STY++SGGLHGVG+S VNALS+E V + R + Q ++RGIP+S L + Sbjct: 122 GKFDSSTYKVSGGLHGVGVSCVNALSEEFDVEIWRDGHTWEQDYARGIPISKLRQAG-TS 180 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 KRGT++ F PD IF ++ L + + A+L+ ++ ++ K G P++ Sbjct: 181 KKRGTKVHFLPDKSIFTV-TEYNYDTLAQRLRELAFLNKGLEIVLVDERTADPKTGQPKR 239 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 +F + GG+ +++ + + ++ + + + +E A+ + + + + Sbjct: 240 NDFKYAGGIAEFIKHINKGKQILHDKPIVMEGLRDNV---DMEIALQYNDSYSETVFCFA 296 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREP 377 N I T +GGTH SG + ALTR I + + + ++ DD+ V ++SV + +P Sbjct: 297 NNINTADGGTHLSGFKTALTRTINSAGQQLGLFKDVKENLSGDDVREGLVAVISVKLPQP 356 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F GQTK KL + D TV+ + + +L QNP A +++ IE + R RK R+ Sbjct: 357 QFEGQTKGKL-NSDIAGTVQALVNEKLGMFLEQNPPVAKRIINKAIEAARAREAARKARD 415 Query: 438 -VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 RK A+ LPGKLADCS+ EL++VEG+SAGG+AKQ R+R QA+LPL+GKI Sbjct: 416 LTRRKGALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKI 475 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++I ++ ALGC + + LRY ++I+MTDADVDG+HI +LL Sbjct: 476 LNVEKARYDKMLGHEEIRAMITALGCGIGKEDFDPAKLRYGRIILMTDADVDGSHIRTLL 535 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFF++ M +LI++ H+++ PPLF+I +G Y DE +++ + G Sbjct: 536 LTFFFRHMTELIKRGHVYIAQPPLFKIKKGKFEQYIKDEREFVRVMVKRASDG 588 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 Q++ + + GK ++ R+KGLGEM +SQL ET MD +RTLL V++ + +T+ Sbjct: 786 QELFDYVVEQGKRDYQVQRYKGLGEMTSSQLWETTMDPERRTLLSVKLED----IAETET 841 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R KFI++ A + ++ Sbjct: 842 IFTTLMGEDVEARRKFIEDNALDVKNLD 869 >gi|171059316|ref|YP_001791665.1| DNA topoisomerase IV subunit B [Leptothrix cholodnii SP-6] gi|170776761|gb|ACB34900.1| DNA topoisomerase (ATP-hydrolyzing) [Leptothrix cholodnii SP-6] Length = 658 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 252/670 (37%), Positives = 358/670 (53%), Gaps = 39/670 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++ Y +SIR+L+GLEPV+ RPGMY T H+ E IDNA DE +AGY Sbjct: 1 MSTPKPNNAYAEASIRVLKGLEPVKQRPGMY---TRTDTPLHIVQEAIDNAADEALAGYG 57 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEIS 151 I V+L +G ++V D+GRGIP HP+ +EI+ T LHAGGKFD + Y S Sbjct: 58 KSIAVTLHADGSVSVEDDGRGIPFGLHPE-EQVPVVEIVFTRLHAGGKFDKGSGGAYSFS 116 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITF 209 GGLHGVG+SV NAL+ L V V+R + + F+ G + PL + R GT + Sbjct: 117 GGLHGVGVSVTNALATRLQVQVSRDKKVATLAFAGGDVIEPLVVRPIASGDRRQGTSVRV 176 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PDPK F A L+ + +SKA L V +K + + + + GGL Sbjct: 177 WPDPKYFES-AELPRGELMHLLRSKAVLMPGVTVTLRNEK-------TGDVQTWLYKGGL 228 Query: 270 KTYLQTKLENRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEEN-PEITSYCNTILT 324 + YL L LI E + E + G W +A+ EE SY N I T Sbjct: 229 RDYLMQNLNAEPLIPLFEGEQYASAGETENFAEGEGAAWCVAFIEEGVNLRESYVNLIPT 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 GGTHE+GL+ L + +K + EL + + ++ DD+ A +LS + +P+F GQT Sbjct: 289 VAGGTHEAGLKDGLFQAVKGFVELHALCPKGVKLMPDDVFGRASFVLSAKVLDPQFQGQT 348 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K +L S DA R V +R + +L Q+ KL E VI +++ R + ++ E + + Sbjct: 349 KERLNSRDALRLVTAFVRPALELWLNQHVEHGKKLAELVIRQAQARQKAGQKVEKKKGSG 408 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + L PGKL DC E+F+VEGDSAGGSAK RN+ QA+LPLRGK+LN Sbjct: 409 VAVL--PGKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRNKETQAILPLRGKVLNAWEVE 466 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFY 560 +++ N +I D+ A+G D LRY K+ I++DADVDG+HI LLLT F+ Sbjct: 467 RDRLFANNEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFF 526 Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKI 612 + LIE ++++ PPLFR+ +G K +YA D+ Q IL++ +K G +G Sbjct: 527 RHFPKLIENGNIYIAKPPLFRVDAPARGKKPAAKMYALDDGELQAILDKLRKEGAREGSW 586 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671 ISRFKGLGEM A QL ET ++ + R LLRVE T DS+ KLMG +A R Sbjct: 587 SISRFKGLGEMSAEQLWETTLNPDTRRLLRVEY--GRLDFAATVDSLTKLMGKGEAASRR 644 Query: 672 KFIQERASFI 681 + ++ + Sbjct: 645 ELMELHGDSV 654 >gi|239993753|ref|ZP_04714277.1| DNA gyrase subunit B [Alteromonas macleodii ATCC 27126] Length = 806 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 18/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 SA +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SAENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + +G ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TVLIHSDGSVSVSDDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L + + R Q++ G+P +PL +K GT I F P F Sbjct: 121 GVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D + L K + ++L+ V +++ E + F + GG+K +++ Sbjct: 180 DTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGGIKAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 E ++ + ++F +E++ VE A+ W + + + N I +GGTH +G R Sbjct: 232 EKKTPVHQKVFHFSSEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRG 289 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 ALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRP 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+A+ + +L++NP E+ + +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++ Sbjct: 470 ATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYV 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D++ L G Sbjct: 530 YIAQPPLYKVKKGKQEQYLKDDDALTNYLTSIAIDG 565 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E ++ LE K I R+KGLGEM QL ET MD R +L+V I + Sbjct: 719 ESFKEALEWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGC--- 775 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A ++++ Sbjct: 776 -DQLFTTLMGDQVEPRREFIEANALKVENLD 805 >gi|71735115|ref|YP_272319.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555668|gb|AAZ34879.1| DNA gyrase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320331107|gb|EFW87078.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330881905|gb|EGH16054.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 805 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|237801661|ref|ZP_04590122.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024520|gb|EGI04576.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 805 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|89092267|ref|ZP_01165221.1| DNA gyrase subunit B [Oceanospirillum sp. MED92] gi|89083355|gb|EAR62573.1| DNA gyrase subunit B [Oceanospirillum sp. MED92] Length = 808 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 228/578 (39%), Positives = 341/578 (58%), Gaps = 18/578 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + +YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SGEDNQDYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V + + +TV+DNGRGIP + HP+ S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 EIKVIIHPDESITVMDNGRGIPTDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS +L +T+ R + Q + G P +PL + GT + F P + Sbjct: 121 GVGVSVVNALSVKLKMTIRRNGQVHEQVYRHGEPEAPLSVVGET-ETSGTMVRFWPSEET 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + ++L+ V+ ++ E E F + GGL +++ Sbjct: 180 FSNV-SFKFDILAKRLRELSFLNSGVRIVLKDERTAVE-------EVFEYEGGLGAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ ++ T + VE A+ W + I S+ N I +GGTH SG Sbjct: 232 LNTNKTTVNKLFHF--TAEHEASGVAVEVAMQWNDSFQESIHSFTNNIPQRDGGTHLSGF 289 Query: 335 RVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E + IS DD I+SV + +P+F+ QTK KLVS + Sbjct: 290 RAALTRSLNNYIESESLNKGGKISTTGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEV 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE + + YL +NP EA ++ +I+ + R RK R RK A+ LPG Sbjct: 350 KSAVEQTMGERLAEYLQENPQEAKAVVSKMIDAARAREAARKAREMTRRKGALDIAGLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +E+++VEGDSAGGSAKQ R R QA+LPL+GKILNV A +K+ ++ Sbjct: 410 KLADCQEKDPALSEIYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSA 469 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ Sbjct: 470 EVGTLITALGCGIGREEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIERG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL++I +G + Y D+E L + G Sbjct: 530 YVYIAQPPLYKIKKGKQEQYLKDDEALDSYLLQGALDG 567 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G ++ D E L + + G I R+KGLGEM QL ET MD + R +L Sbjct: 711 LQRGERTKEVTDFEEGLNWLLDLSRRGHY---IQRYKGLGEMNPEQLWETTMDPDSRRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R FI+ A + ++ Sbjct: 768 QVTIEDAI----AADQLFTTLMGDEVEPRRNFIESNALQVANLD 807 >gi|300112751|ref|YP_003759326.1| DNA gyrase subunit B [Nitrosococcus watsonii C-113] gi|299538688|gb|ADJ27005.1| DNA gyrase, B subunit [Nitrosococcus watsonii C-113] Length = 807 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 348/581 (59%), Gaps = 19/581 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 AS YD+S I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCDEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + +T+ DNGRGIP + H + +S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 AVIVHSDDSITISDNGRGIPTDIHQE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 GISVVNALS L + + R ++ Q + G+P PL + GT I F P PKIF Sbjct: 121 GISVVNALSAALFLEIHRDGKVYQQHYREGVPQEPLVAIGAT-ERSGTTIRFSPSPKIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F K + A+L+ +V+ ++ I KEEF++ GG+ +++ Sbjct: 180 NIV-FSFDIFAKRLRELAFLNSKVRILLEDER-------IGRKEEFFYEGGISAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F + E+ G VE A+ W + + N I +GGTH +G R Sbjct: 232 KNKTPLHGNVFYFQGERDGV---AVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + +Y E K + DD +LS+ ++P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNQYIEKEGLTKKTKVGTSGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V++ + + F ++L+++P++A + +IE + R RK RE RK A+ LPGKL Sbjct: 349 VVDSLVSEHFQNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 ADCQERDPTLSELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEV 468 Query: 514 MDLVQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC + D LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+ Sbjct: 469 ATLITALGCGIGREEYNPDRLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ ++ L Sbjct: 529 YIAQPPLYKVKRGKQEQYIRDDAEMERYLINLSTDNAKIYS 569 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + +D + + + + R+KGLGEM QL ET M+ R L Sbjct: 710 VQRGDRQQLVNDIQE---AINWLMGEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLS 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I+ + + LMG + R FI+ A + + Sbjct: 767 QVRIDDVI----AADEIFTTLMGDHVEPRRDFIESNALNVAHLD 806 >gi|297537200|ref|YP_003672969.1| DNA gyrase subunit B [Methylotenera sp. 301] gi|297256547|gb|ADI28392.1| DNA gyrase, B subunit [Methylotenera sp. 301] Length = 809 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 226/573 (39%), Positives = 339/573 (59%), Gaps = 21/573 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANL 96 + S +YD+SSI+ILEGL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 9 KPVSPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDD 68 Query: 97 IEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I+V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SGG Sbjct: 69 IKVTIHSDNSISVSDNGRGIPTDIKDDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGG 128 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + RQ + +F RG+ +SPL + RGT + F Sbjct: 129 LHGVGVSVVNALSDWLRLKIYRQGKVHQMEFQRGVAVSPLVQTGTTEK-RGTEVHFLASV 187 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + L K + ++L+ VK + + E F + GG+K ++ Sbjct: 188 ETFVLV-EYHFEILAKRIRELSFLNNGVKIELVDQR-------TGKSENFAYSGGIKGFV 239 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++++ + F EK G T+E A+ W + + + N I +GGTH + Sbjct: 240 EYMNRTKTVLHPKTFYAMGEKDG---MTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLT 296 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 GLR A+TR + +Y E + K + DD+ +LSV + +P+F+ QTK KLVS Sbjct: 297 GLRTAMTRTLNQYIEQSDIAKKAKVETTGDDMREGICCVLSVKVPDPKFSSQTKDKLVSS 356 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + Q V + +L +NP +A ++ V++ + R RK RE+ R+ + + L Sbjct: 357 EVQPVVSEVVSAKLAEFLAENPADAKIIVGKVVDAARAREAARKAREITRRKGVMDTMGL 416 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ Sbjct: 417 PGKLADCQERDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLG 476 Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I L+ ALG E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E Sbjct: 477 SQEIATLITALGTSIGKADFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVE 536 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 + H+++ PPL+++ QG Y D++ + L Sbjct: 537 RGHIYIAQPPLYKVKQGKDERYLKDQQELDQYL 569 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K ++ L+ + K + I R+KGLGEM SQL ET MD R LL Sbjct: 712 IKRGEKEQ---TITTFKQALDWLLEEAKHNLNIQRYKGLGEMNPSQLWETTMDPTVRRLL 768 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V+I+ + + LMG + + R FI+ A + ++ Sbjct: 769 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIESNALGVGNLD 808 >gi|126724511|ref|ZP_01740354.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150] gi|126705675|gb|EBA04765.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150] Length = 805 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 223/571 (39%), Positives = 332/571 (58%), Gaps = 16/571 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N+ ++Y A SI++L+GLE VR RPGMYIG TD+ LHH+ E +DN +DE +AG+A+ Sbjct: 4 NEQNQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYECVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 FVNVTIHDDNSISVRDNGRGIPVGIHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R KF+ G L ++GT + F + Sbjct: 123 GVGVSVVNALSVWLELRIWRDGKEHYAKFAHGDTAEHLRVVGDANGQKGTEVRFLASTET 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + A+L+ V+ ++ K E ++ GG+K +++ Sbjct: 183 FSNL-EYSFKTLENRLRELAFLNSGVRIILKDER-----PAEHLKSELFYEGGVKEFVKY 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++S + E + EK +E A+ W + E + N I +GGTH +G Sbjct: 237 LDRSKSSMLEEPIFVRGEKDDI---GIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR I YA+ + K ++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTINSYAQSSGIAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPG 451 + VE+ + + + +NP A ++ ++E + R RK RE RKTA+ L G Sbjct: 354 RPAVESLMNEKLSEWFEENPQLAKMIVGKIVEAALAREAARKARELTRRKTALDVNFLAG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ +Q Sbjct: 414 KLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLGSQ 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I +LV ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 474 EIGNLVMALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPLF++++G VY D+ L Sbjct: 534 YLYIAQPPLFKVSRGKSEVYLKDQPALDDYL 564 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM QL ET +D + RTLL+V+I+ ++ Sbjct: 722 SLLAAILTEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIDDLADADDI---- 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQNNALSVENLD 804 >gi|289628211|ref|ZP_06461165.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649101|ref|ZP_06480444.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|330870078|gb|EGH04787.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 805 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNQVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|289549166|ref|YP_003474154.1| DNA gyrase subunit beta [Thermocrinis albus DSM 14484] gi|289182783|gb|ADC90027.1| DNA gyrase, B subunit [Thermocrinis albus DSM 14484] Length = 791 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 218/572 (38%), Positives = 330/572 (57%), Gaps = 18/572 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I+ + GL+ VR+RP MYIG E+ LHHL E++DNA+DE +AGYA+ I V++ Sbjct: 9 EEYQAQDIKAVTGLQHVRLRPSMYIGDVGERGLHHLIWEILDNAVDEHMAGYASHITVTI 68 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V D+GRGIPV+ HP+ ++++ T L AGGKFD Y SGGLHGVG SV Sbjct: 69 HADMSVSVEDDGRGIPVDIHPE-TGIPAVQMVFTVLGAGGKFDKKVYRYSGGLHGVGASV 127 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I+ Q++ RG P +P++ K R RGT++TF+PDP+IF Sbjct: 128 VNALSEWLVVEVYRDGNIYRQEYVRGEPTTPVQIVGKTRK-RGTKVTFKPDPEIFETT-K 185 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + K + AYL+ ++ + + F G++ + + Sbjct: 186 IKFDIVEKRIRELAYLNPNCTFRLVDER-------TGKDLIYRFEKGIEELVLYLARGKE 238 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + E+ E +G V+ A + ++ + S+ N I T EGGTH +G R LT+ Sbjct: 239 PLIKEVIRVGGEHEGVI---VDIAFTYTKDYKEVVESFVNNIKTLEGGTHVTGFRSGLTK 295 Query: 341 GIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + + + ++ + +DL V ++S + +P+F GQTKTKL + + + VE+ Sbjct: 296 AVMRLLPNIKLQKELKETITGEDLREGLVAVVSCKVPDPQFEGQTKTKLGNQNVKSIVES 355 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + Y +N ++E IE + R +K +E V R++ + LPGKLADCS Sbjct: 356 VVYEQLSSYFDKNRDVLRVIVEKAIEAALAREAAKKAKELVRRRSPLEDTTLPGKLADCS 415 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + ELFIVEG+SAGGSAKQ R+R QA+LPLRGKILNV A +K+ +N++I +V Sbjct: 416 EKDPEKCELFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLSNEEIKAIV 475 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ++GC LRY ++I+MTDADVDG+HI +LLLTFFY+ M L+E +L++ P Sbjct: 476 SSIGCGIGEDMDLSKLRYHRIILMTDADVDGSHIRTLLLTFFYRYMPKLVEGGYLYIAQP 535 Query: 578 PLFRITQGTKSVYAHDEEHKQKIL-EEFKKHG 608 PL+R +G VY D+ +++L E+ KK G Sbjct: 536 PLYRAKKGKTVVYLKDDRELEQLLMEDIKKEG 567 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL + G + E + + K EI R+KGLGEM QL ET M+ Sbjct: 690 PPL-TVGVGKRE---KTLEDLFSLYRDILDLAKENWEIQRYKGLGEMNPEQLWETTMNPA 745 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LLRV I + + LMG + + R +FI+ A + ++ Sbjct: 746 TRRLLRVTIED----AAEADRIFSILMGEEVEPRREFIEAYAREVRNLD 790 >gi|330500918|ref|YP_004377787.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01] gi|328915204|gb|AEB56035.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01] Length = 806 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 232/570 (40%), Positives = 348/570 (61%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 TITIHPDESISVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS EL +T+ R I+ Q + G+P +PL + GT+I F+P + F Sbjct: 121 GVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEETFA 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ ++E F + GGLK +++ Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGILLRDER-------TGKEELFKYEGGLKAFVEFLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+++++ + E+ G VE A+ W + I + N I +GGTH +G R Sbjct: 232 TNKTVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E K IS DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRHLNNYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q+ Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D+E + + Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMDEYM 558 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 721 FKEALDWLMNESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI----AAD 776 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 777 QIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|299530844|ref|ZP_07044259.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44] gi|298721360|gb|EFI62302.1| DNA topoisomerase IV subunit B [Comamonas testosteroni S44] Length = 656 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 238/666 (35%), Positives = 345/666 (51%), Gaps = 38/666 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S+ Y SIR+L+GLEPV+ RPGMY T H+ EVIDNA DE +AGY I+ Sbjct: 4 KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155 ++ +G +V D+GRGIP HP+ +E++ T LHAGGKFD Y SGGLH Sbjct: 61 FTMHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG+SV NAL+ L V V R + + FS G + PL+ + K+GT + PD Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L+ + +SKA L V +K + + F GGL+ YL Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQSWQFKGGLRDYL 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329 L +I G +K E A + P SY N I T GGT Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291 Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 H+SGLR L + +K + ++ + + ++ DD+ A +L+ + +P+F GQ K +L Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 S DA R V +R + +L ++ KL E I+ ++ R + ++ E + + + L Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 PGKL DC E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G E D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529 Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617 LIE H+ + PPLFR+ +G K VYA D I+E+ K G + K ++SRF Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676 KGLGEM A QL ET ++ + R LL V+ ++ + KLMG +A R + ++ Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--LDFAQSEAVVTKLMGKGEAAARRELMEL 647 Query: 677 RASFID 682 ++ Sbjct: 648 HGDAVE 653 >gi|330964178|gb|EGH64438.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 805 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|257092303|ref|YP_003165944.1| DNA topoisomerase IV subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044827|gb|ACV34015.1| DNA topoisomerase IV, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 649 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 244/663 (36%), Positives = 349/663 (52%), Gaps = 43/663 (6%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A SI +L+GLEPVR RPGMY T H+ E IDNA DE + GY I V+L Sbjct: 2 SYTAESIAVLKGLEPVRHRPGMY---TRTDCPLHIIQEAIDNAADEALGGYCKRISVTLH 58 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS----TYEISGGLHGVG 158 + +TV D+GRGIPVE HP TLE++ T LHAGGKF+ Y SGGLHGVG Sbjct: 59 RDHSVTVQDDGRGIPVEMHP-LEKVPTLEVVFTRLHAGGKFNKDDGASAYRFSGGLHGVG 117 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFG 217 +SV NALS L V V R F+ G + PL++ + GTR+ PDP F Sbjct: 118 VSVTNALSTRLEVEVVRDGARHRMAFAGGEVVEPLQRVGDAPKKTTGTRLRAWPDPA-FF 176 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D A+L ++ +SKA L + S + E+ F G+ YL ++ Sbjct: 177 DTPAIPLAQLERLLRSKALLLPGLHVSLSVE--------DGATSEWCFANGMLQYLAEQI 228 Query: 278 ENR---SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESG 333 + + SSE + K ++ WAI W E SY N I T GGTHE+G Sbjct: 229 DGEAVAPVFSSEKYAAKGDENFPAGSGAAWAICWTAEGGLARESYVNLIPTTAGGTHEAG 288 Query: 334 LRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR A I+ +AE + + + ++D+ A +L+V + +P F GQTK +L S DA Sbjct: 289 LRQAALDAIRSFAEHHALLPKGVKLAAEDVFSRASFVLAVRMLDPSFQGQTKERLNSRDA 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 V LRDP + +L ++P A ++ + I ++ R R ++ E +++ + LPGK Sbjct: 349 VALVARMLRDPLELWLNEHPEAAKRITDLAIRAAQARTRAGQKVEKRKQSGV--AILPGK 406 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DC + E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN + + N++ Sbjct: 407 LSDCQSEDVNRNEIFLVEGDSAGGSAKSGRDKELQAILPLRGKVLNTWEVEAGSLFANRE 466 Query: 513 IMDLVQALGCRTRSQYREE----DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + D+ ALG + +LRY KV+IMTDADVDG+HI LL T FY+ LI Sbjct: 467 VHDIAVALGIDPHPPSAPDAVLTNLRYGKVVIMTDADVDGSHIRVLLCTLFYRHFPKLIA 526 Query: 569 QKHLFLISPPLFRIT---QGT----KSVYAHDEEHKQKILEEFKKHGKG--KIEISRFKG 619 + HL+ PPL+R+ QG + +YA D + ++ + G I ISRFKG Sbjct: 527 RGHLYFAQPPLYRLDVPGQGKNRPPRKIYALDSAERDASIDRLRLEGVKPEAISISRFKG 586 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678 LGEM QL ET M + R L+R+ + + + +N LM ++ R +++E Sbjct: 587 LGEMNPEQLWETTMSPDTRRLMRIRMPG----TEAAKPVMNMLMAKGESAGRRAWMEENG 642 Query: 679 SFI 681 + I Sbjct: 643 AMI 645 >gi|225023722|ref|ZP_03712914.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC 23834] gi|224943604|gb|EEG24813.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC 23834] Length = 799 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 230/572 (40%), Positives = 338/572 (59%), Gaps = 19/572 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 + Y A SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQTQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I VS++ + +T+ DNGRGIP HPK +S E+I+T LHAGGKFDN++Y++SGGLH Sbjct: 62 SITVSINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLE-KKEKVRNKRGTRITFRPDPK 214 GVG+SVVNALSD L +T+ R+ +F RG ++PL+ + +K GTR+ F + Sbjct: 121 GVGVSVVNALSDWLKLTIWREGKEHFVEFRRGETVAPLKAVADCPADKHGTRVQFMASEE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 FG+ + L K + ++L+ VK ++ + E F GG+ +++ Sbjct: 181 TFGEV-QYKFETLAKRIRELSFLNNGVKIELFDKRD-------GKHENFAESGGVAGFVR 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + + +IF E+ G TVE A+ W + + + N I +GGTH + Sbjct: 233 YTTGGKKPLHDKIFYTLGERDG---MTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTA 289 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 LR A+TR I +Y E + K + DD+ V +LSV + +P+F+ QTK KLVS + Sbjct: 290 LRAAMTRTINQYIEANEIAKKAKVDTSGDDMREGLVCVLSVKLPDPKFSSQTKDKLVSSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLP 450 V L +L +NP +A + +++ + R RK RE+ R+ + L LP Sbjct: 350 IAPVVNEVLSQALHEFLEENPQDAKIICSKIVDAARAREAARKAREITRRKGVMDGLGLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ + Sbjct: 410 GKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLAS 469 Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ Sbjct: 470 QEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVER 529 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL++ G + Y D+ K + L Sbjct: 530 GYIYIAQPPLYKAKYGKQERYLKDDTEKDEFL 561 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ ++ + + I R+KGLGEM A QL ET MD R LL+V I + Sbjct: 714 FEQSIDILLAGAQKGMAIQRYKGLGEMNAEQLWETTMDPEVRRLLKVRIEDAI----AAD 769 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 LMG + + R +FI+ A ++ Sbjct: 770 KVFVTLMGDEVEPRREFIETNALIAQNIDA 799 >gi|120596837|ref|YP_961411.1| DNA gyrase subunit B [Shewanella sp. W3-18-1] gi|146291115|ref|YP_001181539.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32] gi|120556930|gb|ABM22857.1| DNA gyrase subunit B [Shewanella sp. W3-18-1] gi|145562805|gb|ABP73740.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32] gi|319424421|gb|ADV52495.1| DNA gyrase, B subunit [Shewanella putrefaciens 200] Length = 805 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 346/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVAIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G+P +P+++ GT I F P F D Sbjct: 121 VSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ E+F E+ TVE A+ W + I + N I +GGTH G R A Sbjct: 232 NKTPVNKEVFHFMQERDD--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTVVYPTQ 571 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804 >gi|170746766|ref|YP_001753026.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831] gi|170653288|gb|ACB22343.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 814 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 239/588 (40%), Positives = 349/588 (59%), Gaps = 23/588 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 A Q+ Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 2 ADTPQTEPAVYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+L+ V+L+ +G TV DNGRGIPV+ H K S E+I+T LHAGGKFD ++Y++SG Sbjct: 62 HADLVTVTLNADGSCTVSDNGRGIPVDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L + + R + + +F G ++PLE +RGT +TF P Sbjct: 121 GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPS 180 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F FD A L K + A+L+ V+ + + +K EE Y+ GG++ + Sbjct: 181 TETFT-MIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKR-----EELYYEGGIEAF 234 Query: 273 LQTKLENRSLIS--SEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++ +R I + +E+ G VE A W + + + N I +GGT Sbjct: 235 VRYLDRSRKPIDGMTSPVVVSSERDGI---RVEVAFWWNDSFNETVLPFTNNIPQRDGGT 291 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR + YAE + K +S+ +D ++SV + +P+F+ QTK KL Sbjct: 292 HMAGFRAALTRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKL 351 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRK 446 VS + + VEN L + +L +NP +A ++ V+ + R RK RE RK A+ Sbjct: 352 VSSEVRPAVENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDI 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV +++ Sbjct: 412 ASLPGKLADCQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADR 471 Query: 507 IRNNQQIMDLVQALGCRT------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + ++ +I L+ ALG R + E LRY ++IIMTDADVDG+HI +LLLTFF+ Sbjct: 472 MLSSAEIGTLITALGAGIGRSSTDREGFNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFF 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++M +LIE+ HL++ PPL++ +G +++Y DE + L + G Sbjct: 532 RQMPELIERGHLYIAQPPLYKAERGRRAIYLKDERALEDYLIDQGTEG 579 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ +++ R+KGLGEM A QL ET +D + R+LL+V + + D D Sbjct: 731 ALFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVRV----KDVTDADDL 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE A + ++ Sbjct: 787 FVKLMGDVVEPRREFIQENALSVANLD 813 >gi|149204288|ref|ZP_01881255.1| DNA gyrase subunit B [Roseovarius sp. TM1035] gi|149142173|gb|EDM30220.1| DNA gyrase subunit B [Roseovarius sp. TM1035] Length = 805 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 220/573 (38%), Positives = 331/573 (57%), Gaps = 16/573 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 +A + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEPAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V++ + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADAVNVTIHADSSVSVSDNGRGIPVDIH-EGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L + + R +F G + L ++GT + F Sbjct: 121 LHGVGVSVVNALSEWLELRIWRNGKEHYARFEGGFTVESLRVVGDANGRKGTEVRFLAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + + L K + A+L+ V+ + ++ P + E ++ GG+K ++ Sbjct: 181 ETFSNL-EYIFETLEKRLRELAFLNSGVRIILTDER-----PTEPLRSELFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++S + E+ +E A+ W + + + N I +GGTH + Sbjct: 235 KYLDRHKSPAMPDPIFITGERDDI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + K ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINTYAQTSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP A ++ +IE + R RK RE RK + L Sbjct: 352 EVRPAVEGLVGEKLAEWFEENPQVARVIVGKIIEAAHAREAARKARELTRRKNPMDVNFL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS TELF+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ Sbjct: 412 AGKLKDCSSKDPSKTELFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLG 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ + LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFDIKKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPL+++ +G VY D+ + L Sbjct: 532 GGYLYIAQPPLYKVMRGKSEVYLKDQGGLEDYL 564 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ K G+ + + R+KGLGEM +QL ET +D RTLL+V+I+ + + D Sbjct: 722 DLLDAILKEGEKGLSLQRYKGLGEMNPNQLWETTLDPEARTLLQVKIDD----VAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A + ++ Sbjct: 778 FTKLMGDVVEPRREFIQDNALNVANLD 804 >gi|302877248|ref|YP_003845812.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2] gi|302580037|gb|ADL54048.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2] Length = 792 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 223/566 (39%), Positives = 335/566 (59%), Gaps = 19/566 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 YD++SI++L+GLE VR RPGMYIG T D LHH+ E +DNA+DE +AG+ N I V Sbjct: 2 SEYDSTSIKVLKGLEAVRKRPGMYIGDTNDGTGLHHMVFEAVDNAVDEALAGHCNEINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V DNGRGIP + H K +S E+I+T LHAGGKFD+++Y++SGGLHGVG+S Sbjct: 62 IHADNSISVSDNGRGIPTDIH-KEEGRSAAEVIMTILHAGGKFDSNSYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS+ L +T+ R+ +F G P++PL+ + + +GT + F + FG Sbjct: 121 VVNALSEWLKLTIYREGKEHFMEFRHGDPVAPLKVIGESKK-KGTVVHFLAAKETFGLI- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + ++L+ VK + E E F F GG+K ++ N+ Sbjct: 179 EFHFDILAKRLRELSFLNNGVKIALIDHRNGKE-------ENFSFTGGIKGFVDYMNRNK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + +F EK G T E A+ W + + + N I +GGTH + +R A+T Sbjct: 232 TALHPTVFHAIGEKDG---MTAEIAMQWNDTYQESVQCFTNNIPQRDGGTHLTAMRAAMT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + Y E Q K + DD+ +LSV + +P+F+ QTK KLVS + + +E Sbjct: 289 RTLNNYIEAEQLAKKAKVEPTGDDMREGLTAVLSVKLPDPKFSSQTKDKLVSSEVRPVIE 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADC 456 + +L++ P +A ++ +IE + R RK R++ R+ + + LPGKLADC Sbjct: 349 ELIGQQMSAFLLERPNDAKIIVGKIIEAARAREAARKARDLTRRKGVLDGMGLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A EK+ ++Q+I L Sbjct: 409 QEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKLISSQEIATL 468 Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + LG + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++ Sbjct: 469 ITVLGTGIGKDEYNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIA 528 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL++I QG + Y D+ + L Sbjct: 529 QPPLYKIKQGREERYLKDDLEMKSYL 554 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E + K + I R+KGLGEM QL ET M R LL+V I + Sbjct: 707 FKQAIEWLLEEAKRGLSIQRYKGLGEMNPEQLWETTMFVKNRILLKVRIEDTI----AAD 762 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI++ A ++ Sbjct: 763 EVFTTLMGDLVEPRRAFIEKNALGAKNLD 791 >gi|170724374|ref|YP_001758400.1| DNA gyrase subunit B [Shewanella woodyi ATCC 51908] gi|169809721|gb|ACA84305.1| DNA gyrase, B subunit [Shewanella woodyi ATCC 51908] Length = 805 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 224/575 (38%), Positives = 348/575 (60%), Gaps = 18/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N + Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDVI 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHADGSVSVKDDGRGIPVAIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G P+ P++ N GT I F P + F D Sbjct: 121 VSVVNALSSKLQLTIRRDGKLYEQFYNMGEPVEPIKAIGDATN-TGTEIRFWPSSETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 TL-FHFDILAKRVRELSFLNSGVGIRLVDERDNKD-------EFFKYEGGISAFVDYLNV 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFIQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNSYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + YL+++P EA ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q+++ Sbjct: 410 DCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVV 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y D+ + L G Sbjct: 530 IAQPPLYKVKKGKQEQYLKDDPALTEYLTNLALDG 564 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L K + I R+KGLGEM QL ET MD R +L V I + Sbjct: 722 EALNWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAI----AADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A + ++ Sbjct: 778 FTCLMGDHVEPRRDFIESNALNVANLD 804 >gi|330890246|gb|EGH22907.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori str. 301020] Length = 805 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIESGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A + ++ Sbjct: 775 DQIFTTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|146280401|ref|YP_001170554.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501] gi|145568606|gb|ABP77712.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501] Length = 804 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 228/565 (40%), Positives = 342/565 (60%), Gaps = 20/565 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I +++ Sbjct: 6 TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSDISITI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ H S E+I+T LHAGGKFD+++Y++SGGLHGVG+SV Sbjct: 66 HTDESITVRDNGRGIPVDIHE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+EL +T+ R+ ++ Q + G+P +PL + + GT+I F+P + F + Sbjct: 124 VNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQNIH- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L K + ++L+ V ++ E E F + GGL ++ N++ Sbjct: 182 FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLNTNKT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ G VE A+ W + I + N I +GGTH +G R ALTR Sbjct: 235 AVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTR 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + Y E K I+ DD I+SV + +P+F+ QTK KLVS + + VE Sbjct: 292 NLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457 + F +L+++P EA ++ +I+ + R RK R RK A+ LPGKLADC Sbjct: 352 EMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ L+ Sbjct: 412 EKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++ Sbjct: 472 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G + Y D+E ++ L Sbjct: 532 PPLYKVKRGKQEQYIKDDEAMEEYL 556 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ G + + R+KGLGEM QL ET MD N R +L+V I + Sbjct: 719 FKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R +FI+ A + ++ Sbjct: 775 QIFNTLMGDAVEPRREFIETNALAVSNLD 803 >gi|95929989|ref|ZP_01312729.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95133958|gb|EAT15617.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 791 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 234/573 (40%), Positives = 348/573 (60%), Gaps = 18/573 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +NY A +I++LEGL VR RP MYIG T + LHHL EV+DN++DE +AG+ + + V+ Sbjct: 2 ENNYSAENIKVLEGLTAVRKRPAMYIGSTSSQGLHHLVYEVVDNSIDEALAGFCDSVYVT 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+ +G +TV DNGRGIPV+ H NKS E+++T LHAGGKFD+ TY++SGGLHGVG+S Sbjct: 62 LNVDGSVTVEDNGRGIPVDWHA-TENKSAAEVVMTVLHAGGKFDSDTYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS +L + + R I+ Q + GIP + L++ +GT+ITF PD IF Sbjct: 121 VVNALSSKLELEIRRNGKIYEQTYETGIPKTDLKEVSDTIK-KGTKITFWPDASIFET-V 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L K + A+L+ V+ + D+ + +EFY+ GG+ ++++ + Sbjct: 179 EYSYEVLSKRLRELAFLNAGVRVTITDDR-------TEKVQEFYYEGGISSFVEYLNRAK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + + I EK+G +E A + + +I ++ N I T EGGTH G + ALT Sbjct: 232 NPLHNNIIFFNGEKEGVQ---IEIAFQYNDGYDEKIYTFANNINTHEGGTHLVGFKAALT 288 Query: 340 RGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + YA + I + DDL ++SV + +P+F GQTKTKL + + + VE Sbjct: 289 RTMNAYATANNLLKNIKASVSGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVE 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + YL +NP A K+LE IE + R RK R+ RK A+ L LPGKLADC Sbjct: 349 TLINEKLAVYLEENPQVAKKILEKGIEAARAREAARKARDLTRRKGALDGLSLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +E++IVEGDSAGGSAKQ R+RSNQA+LPL+GKILNV + +K+ + +I L Sbjct: 409 QEKDPALSEIYIVEGDSAGGSAKQGRDRSNQAILPLKGKILNVEKSRFDKMLTSNEIRTL 468 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+G + + +RY ++IIMTDADVDG+HI +LLLTFF+++M ++IE+ +L++ Sbjct: 469 ITAMGAGIGKDDFDIAKIRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLYIA 528 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G K +Y DEE L Sbjct: 529 QPPLYKLKKGKKEIYLKDEETLLDYLLSIGVEN 561 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 ++++L+ F K I R+KGLGEM QL ET MD KR LL+V+I + Sbjct: 702 SVNDREELLDFFLSRAKKGQYIQRYKGLGEMNPEQLWETTMDPEKRVLLQVKIEDAV--- 758 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T + LMG + + R +FI+ A + ++ Sbjct: 759 -ATDNIFTVLMGDQVEPRREFIENNALNVSNLD 790 >gi|327478616|gb|AEA81926.1| DNA gyrase subunit B [Pseudomonas stutzeri DSM 4166] Length = 804 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 228/565 (40%), Positives = 342/565 (60%), Gaps = 20/565 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I +++ Sbjct: 6 TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSDISITI 65 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +TV DNGRGIPV+ H S E+I+T LHAGGKFD+++Y++SGGLHGVG+SV Sbjct: 66 HTDESITVRDNGRGIPVDIHE--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 123 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+EL +T+ R+ ++ Q + G+P +PL + + GT+I F+P + F + Sbjct: 124 VNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAETFQNIH- 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L K + ++L+ V ++ E E F + GGL ++ N++ Sbjct: 182 FSWDILAKRLRELSFLNSGVGIVLRDERTAKE-------ELFKYEGGLSAFVAYLNTNKT 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 ++ G VE A+ W + I + N I +GGTH +G R ALTR Sbjct: 235 AVNQVFHFNVQRDDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTR 291 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + Y E K I+ DD I+SV + +P+F+ QTK KLVS + + VE Sbjct: 292 NLNNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCS 457 + F +L+++P EA ++ +I+ + R RK R RK A+ LPGKLADC Sbjct: 352 EMGKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ L+ Sbjct: 412 EKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++++ Sbjct: 472 TALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G + Y D+E ++ L Sbjct: 532 PPLYKVKRGKQEQYIKDDEAMEEYL 556 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ G + + R+KGLGEM QL ET MD N R +L+V I + Sbjct: 719 FKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R +FI+ A + ++ Sbjct: 775 QIFNTLMGDAVEPRREFIETNALAVSNLD 803 >gi|160871558|ref|ZP_02061690.1| DNA gyrase, B subunit [Rickettsiella grylli] gi|159120357|gb|EDP45695.1| DNA gyrase, B subunit [Rickettsiella grylli] Length = 847 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 236/571 (41%), Positives = 352/571 (61%), Gaps = 18/571 (3%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I++ L Sbjct: 47 YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCSQIDIILH 106 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 +G +TV DNGRGIPV+ H + N+S E+I+T LHAGGKFD+++Y++SGGLHGVG+SVV Sbjct: 107 SDGSVTVKDNGRGIPVDIHTE-ENRSAAEVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVV 165 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS++LH+ + R N ++ Q + G P +PL+ + RGT I F P+ IF F Sbjct: 166 NALSEKLHLIIRRNNNVYEQTYRLGEPTAPLQITGTTQE-RGTEIRFYPNKLIFQQNNKF 224 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 LLK + ++L+ V + ++ E +F + GG+K +++ +N++L Sbjct: 225 HYDILLKRLRELSFLNSGVAINITDERTNEET-------QFKYIGGIKAFVEYLNQNKTL 277 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 I + F E+ G +VE A+ W + I + N I +GGTH +G R ALTR Sbjct: 278 IHKQPFYFSAERDGI---SVEVALQWNDSFQENIFCFTNNISQRDGGTHLAGFRAALTRT 334 Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 + Y E T K I+ DD +LSV + +P+F+ QTK KLVS + + VE Sbjct: 335 LNTYIEHEATNKKLKIATTGDDTREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVETL 394 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQ 458 + + +L++ P +A ++ +I+ + R RK R RKTA+ LPGKLADC + Sbjct: 395 TSEKLEAFLLETPQDARAIMMKIIDAARAREAARKAREMTRRKTALDIADLPGKLADCQE 454 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 ELFIVEGDSAGGSAKQ RNR QA+LPL GKILNV + +K+ +++ + L+ Sbjct: 455 TDPALCELFIVEGDSAGGSAKQGRNRRYQAILPLTGKILNVEKSRFDKMLSSEAVGTLII 514 Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALGC + +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+++ +++ P Sbjct: 515 ALGCGIGKEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLQRGTIYIAQP 574 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PL++I +G + Y D+ Q L + H Sbjct: 575 PLYKIKKGKQEQYLKDDAALQAYLTQTALHN 605 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++ E + I R+KGLGEM QL +T MD N R L+RV I + T Sbjct: 762 FKEVYEWLLAEARRGQAIQRYKGLGEMNPDQLWQTTMDPNTRCLVRVTIEDAI----ATD 817 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FIQ+ A + ++ Sbjct: 818 QIFTTLMGDQVEPRRDFIQQNALEVGNLD 846 >gi|237746615|ref|ZP_04577095.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS] gi|229377966|gb|EEO28057.1| DNA topoisomerase IV subunit B [Oxalobacter formigenes HOxBLS] Length = 659 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 248/670 (37%), Positives = 354/670 (52%), Gaps = 42/670 (6%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 Y SI +L+GLEPVR RPGMY T + H+ +EVIDNA DE I GY I+ Sbjct: 3 EKKSIYSEESITVLKGLEPVRQRPGMY---TRTENPLHIVTEVIDNASDEAIGGYCKNIQ 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS---TYEISGGLH 155 V L+ +G ++V D+GRGIPV HP+ T+EI+ T LHAGGKF Y SGGLH Sbjct: 60 VCLNADGSVSVEDDGRGIPVGLHPE-EKVPTVEIVFTRLHAGGKFAKGGESAYAFSGGLH 118 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRPDP 213 GVG+SV NALS + VTV R+ + F+ G PL + R K GT++T PD Sbjct: 119 GVGVSVTNALSKRIEVTVWREKQVHHIAFTDGDVSEPLTSRPLSRGEKKSGTKVTVWPDA 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L + +SKA L V K E E + + GL+ YL Sbjct: 179 KYFDSMTIPLPE-LKHLLRSKAILLPGVHVELHNAK-------TGETETWQYEDGLRGYL 230 Query: 274 QTKLE--NRSLISSEIFTGKTEKKGTHRG-----TVEWAIAWCEENP-EITSYCNTILTD 325 LE + +F G+ G + G W +AW + P S+ N I T Sbjct: 231 SQALELASGDETVIPLFAGEHYADGENEGFAGGEGAAWIVAWTADGPLVRESFVNLIPTT 290 Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHESGLR L ++ + + + + + ++ +D+ +LS + +P+F GQ K Sbjct: 291 AGGTHESGLRDGLFNAVRSFTDIHSLLPKGVRLLPEDVFARVSFVLSAKVLDPQFQGQIK 350 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 +L S DA R V + +R F+ +L QN KL E VI +++ R+R+ ++ E + +A+ Sbjct: 351 ERLNSRDAVRLVSHFVRPAFELWLHQNVEYGRKLAELVIRQAQSRMRQLQKVEKKKSSAV 410 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN Sbjct: 411 AVL--PGKLTDCESRDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETEK 468 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ NQ+I D+ A+G D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 469 DRLFANQEIHDIAVAVGVDPHGANDSPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 528 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTKSV---YAHDEEHKQKILEEFKKHG--KGKIE 613 LIE ++++ PPL+RI +G K + YA D+ IL++ K G + Sbjct: 529 HFPRLIENGNIYVARPPLYRIDAPARGRKPIQKLYALDDMELAGILDKLKSEGVKDSALG 588 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672 ISRFKGLGEM A QL ET ++ + R LL + + ++ + LMG +A R Sbjct: 589 ISRFKGLGEMNAEQLWETTLNPDTRRLLPITF--GAFTRDESTERFQMLMGKGEAAARRN 646 Query: 673 FIQERASFID 682 +++E + + Sbjct: 647 WMEEHGNEAE 656 >gi|103488449|ref|YP_618010.1| DNA gyrase, B subunit [Sphingopyxis alaskensis RB2256] gi|98978526|gb|ABF54677.1| DNA gyrase subunit B [Sphingopyxis alaskensis RB2256] Length = 858 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 224/586 (38%), Positives = 347/586 (59%), Gaps = 19/586 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + E A Q ++ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DN Sbjct: 4 TPENSAPEGAAKQPNANAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN 63 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF- 143 A+DE +AG+ +LI ++L+ +G ++V DNGRGIP + H + S E+I+T LHAGGKF Sbjct: 64 AIDEALAGHCDLILITLNSDGSVSVEDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFE 122 Query: 144 ---DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 D++ Y++SGGLHGVG+SVVNALS+ L +T+ R +F G ++PL Sbjct: 123 NTSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRDGQEHWMRFEHGDAVAPLRVNGPAP 182 Query: 201 -NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 K+GTR+TF+ F + FD +L + A+L+ V+ + + Sbjct: 183 AGKKGTRVTFQASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRIKLVDAR-----HAEHV 237 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSY 318 + ++ GG+ +++ N++ + + +E+ G +EW ++ + + Sbjct: 238 SHDLFYEGGIAAFVKYLDRNKTPLLPDPIAISSERDGIGIDVALEWNDSY---YENVLCF 294 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH + R ALTR + Y E + K +S+ +D+ I+SV + + Sbjct: 295 TNNIPQRDGGTHLAAFRAALTRTLNGYGEKSGLLKKEKVSLTGEDMREGLTAIVSVKLPD 354 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + ++ +E+ + D +L +NP A +++ V++ + R +K R Sbjct: 355 PKFSSQTKDKLVSSEVRQPLESLMADRMTEWLEENPAYAKAVIQKVVDAAAAREAAKKAR 414 Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E RK A+ LPGKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GK Sbjct: 415 ELTRRKGAMDIASLPGKLADCQERDPAKCELFLVEGDSAGGSAKQGRDRHVQAILPLKGK 474 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A ++I +++++ L+QALG R ++ E LRY K++IMTDADVDGAHI +LL Sbjct: 475 ILNVERARFDRIISSKEVGTLIQALGTGIRDEFNIEKLRYHKIVIMTDADVDGAHIRTLL 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LTFFY++M ++IE+ HL++ PPL+++ +G VY D+ + L Sbjct: 535 LTFFYRQMPEIIEKGHLYIAQPPLYKVAKGRSEVYLKDDSALENYL 580 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++LE H + + ISR+KGLGEM A QL ET +D + R+LLRV + + Sbjct: 775 ELLEAIFAHSRKGLAISRYKGLGEMNAEQLWETTLDPSNRSLLRV----EAEQADIAHEI 830 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R FIQ A + ++ Sbjct: 831 FERLMGDEVEPRRDFIQTNALSVANLD 857 >gi|118498118|ref|YP_899168.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. novicida U112] gi|194323345|ref|ZP_03057129.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. novicida FTE] gi|208779469|ref|ZP_03246814.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG] gi|118424024|gb|ABK90414.1| topoisomerase IV, subunit B [Francisella novicida U112] gi|194322709|gb|EDX20189.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. novicida FTE] gi|208744430|gb|EDZ90729.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG] Length = 627 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 356/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATT 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|146305046|ref|YP_001185511.1| DNA gyrase subunit B [Pseudomonas mendocina ymp] gi|145573247|gb|ABP82779.1| DNA gyrase subunit B [Pseudomonas mendocina ymp] Length = 806 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 228/570 (40%), Positives = 343/570 (60%), Gaps = 20/570 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +++ + ++V DNGRGIPV+ H K S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 VITIHPDESISVRDNGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +T+ R ++ Q + G+P +PL + GT I F+ + F Sbjct: 121 GVSVVNALSEELRLTIRRAGKVWEQIYHHGVPQAPLATVGDT-DGTGTEIHFKASAETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGLK +++ Sbjct: 180 NIH-FSWDILAKRLRELSFLNSGVGILLRDERSGKE-------ELFKYEGGLKAFVEYLN 231 Query: 278 ENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N+++++ + E+ G VE A+ W + I + N I +GGTH +G R Sbjct: 232 TNKNVVNQVFHFNIQREEDGV---GVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFR 288 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 SALTRHLNNYIEQEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 348 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGK Sbjct: 349 TAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 408 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++ + Sbjct: 409 LADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAE 468 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ + Sbjct: 469 VGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGY 528 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+++ +G + Y D+E + + Sbjct: 529 VYIAQPPLYKVKKGKQEQYIKDDEAMDEYM 558 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 721 FKEALDWLMAESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI----AAD 776 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 777 QIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|91974486|ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] gi|91680942|gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] Length = 813 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 245/580 (42%), Positives = 333/580 (57%), Gaps = 14/580 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + A S Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQPIAETPPSVPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + V R +F+ G ++PL +RG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLILRVWRNGKEHIIEFAHGDAVAPLSMVGDANGRRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF P+ F +D A L + A+L+ V S + EK EE Sbjct: 181 TEVTFFASPETFT-HIEYDFATLEHRLRELAFLNSGVNIVLSDMRHAVEKR-----EEMR 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG+ +++ N+ I + G VE A+ W E E + N I Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPAPIVLAADLNGI---GVEVALWWNETYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YA+ K I++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRAALTRQVNGYADSNAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VEN L + + ++P EA ++ VIE + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKVIVGKVIEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 ALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ ++QI L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 472 RFDKMLGSEQIGTLITALGTGIGRDDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M LIE L++ PPL+++T+G Y DE + L Sbjct: 532 QMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571 Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM SQL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVSLQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDL 786 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R +FIQE Sbjct: 787 FTKLMGDVVEPRREFIQEN 805 >gi|330876358|gb|EGH10507.1| DNA gyrase subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 805 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGE-SDSTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|90420488|ref|ZP_01228395.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1] gi|90335216|gb|EAS48969.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1] Length = 811 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 233/586 (39%), Positives = 337/586 (57%), Gaps = 15/586 (2%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEV 89 + + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 SAIPETDPLANPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 +AG+A + V+L+ G TV DNGRGIP + H S E+I+T LHAGGKFD ++Y+ Sbjct: 62 LAGHATHVTVTLNPEGSCTVTDNGRGIPTDIH-TGEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALS +L + + R+ I F+ G+P LE ++ GT ITF Sbjct: 121 VSGGLHGVGVSVVNALSVKLSMKIRRKGKIHEMSFTHGVPDGSLEVTGDAGDETGTAITF 180 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P F FD L + A+L+ V+ + + EK ++ GGL Sbjct: 181 LPSTDTFQGVTEFDYGTLEHRLRELAFLNSGVRIILTDKRHADEKVTE-----LFYEGGL 235 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 + +++ R + E EK G VE A+ W + + + N I +GG Sbjct: 236 EAFVRYLDRARKPLIPEPIVLYGEKDGI---VVEAALWWNDSYNESVLCFTNNIPQRDGG 292 Query: 329 THESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTK 386 TH +G R LTR + YAE + + + DD +LSV + +P+F+ QTK K Sbjct: 293 THMAGFRGGLTRQVTGYAETSGALKREKVTLTGDDCREGLSCVLSVKVPDPKFSSQTKDK 352 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIR 445 LVS + + VE+ + + + ++P E ++ V+E + R RK RK A+ Sbjct: 353 LVSSEVRPVVESLVNETLSTWFEEHPQEGKVVIAKVVEAASAREAARKARDLTRRKGALD 412 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC + +E+FIVEGDSAGGSAK AR+R NQA+LPLRGKILNV A + Sbjct: 413 ITSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGARSRKNQAILPLRGKILNVERARFD 472 Query: 506 KIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 ++ + QI L+ ALG + ++ E LRY K+IIMTDADVDGAHI +LLLTFF+++M Sbjct: 473 RMLGSDQIGTLITALGTSIGKDEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 532 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 +LIE+ ++++ PPL+++T+G +S Y DE+ + L E G Sbjct: 533 ELIERGYIYIAQPPLYKVTRGKQSQYLKDEKALENYLIEGGLDDAG 578 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%) Query: 593 DEEHKQ---KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDL 649 E ++L + G+ + + R+KGLGEM QL ET +D RTL+ V+IN Sbjct: 719 TERELTGPLELLTAVFEVGRKGLTLQRYKGLGEMNPEQLWETTLDPEARTLVMVKINDAT 778 Query: 650 NSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D ++LMG + + R +FIQE A + ++ Sbjct: 779 ----DADQLFSRLMGDEVEPRREFIQEHALQVANLD 810 >gi|254374930|ref|ZP_04990411.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548] gi|151572649|gb|EDN38303.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548] Length = 627 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|94502204|ref|ZP_01308699.1| DNA gyrase subunit B [Oceanobacter sp. RED65] gi|94425665|gb|EAT10678.1| DNA gyrase subunit B [Oceanobacter sp. RED65] Length = 808 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 226/576 (39%), Positives = 346/576 (60%), Gaps = 16/576 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 STENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + + ++V DNGRGIP + HP+ S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 RVVIHPDESISVSDNGRGIPTDIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R ++ Q ++ G+P +PL + GT I F P P+ F Sbjct: 121 GVSVVNALSNKLKMTIRRAGKVWEQSYTMGVPDAPLAEVGNT-ETSGTTIHFHPSPETFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F+ L K + ++L+ V+ ++ E E F F GGLK++++ Sbjct: 180 NIH-FNYDHLAKRLRELSFLNSGVRIVLKDERSDRE-------EVFEFEGGLKSFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ VE A+ W + I + N I +GGTH +G R Sbjct: 232 TNKTALNDIFHFQLEGDNREDGIGVEVAMQWNDSFSENIYCFTNNIPQRDGGTHLAGFRG 291 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD I+SV + +P+F+ QTK KLVS + + Sbjct: 292 ALTRSLNSYIEREGLAKKAKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKS 351 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F+ +L++ P +A +++ +++ + R RK R RK A+ LPGKL Sbjct: 352 AVEQEMSRSFNDFLLEQPQQAKEIVSKMMDAARAREAARKAREMTRRKGALDVAGLPGKL 411 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 412 ADCQEKDPSQSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEV 471 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R ++ + LRY +IIMTDADVDG+HI +LLLTFF+++M ++IE+ H+ Sbjct: 472 GTLITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHV 531 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 F+ PPL++I +G Y D+ ++ L G Sbjct: 532 FIAQPPLYKIKRGKNEQYIKDDMALEEYLTSNALDG 567 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 723 FEGALAWLMGEARKGYSIQRYKGLGEMNPEQLWETTMDPEARRMLRVTIEDAV----AAD 778 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A +D++ Sbjct: 779 QIFTTLMGDEVEPRRDFIESNALLVDNLD 807 >gi|254373469|ref|ZP_04988957.1| topoisomerase IV [Francisella tularensis subsp. novicida GA99-3549] gi|151571195|gb|EDN36849.1| topoisomerase IV [Francisella novicida GA99-3549] Length = 627 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDAILAKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|239830977|ref|ZP_04679306.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301] gi|239823244|gb|EEQ94812.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301] Length = 826 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 229/577 (39%), Positives = 342/577 (59%), Gaps = 18/577 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 21 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 80 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 81 LVTVTLNPDGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 139 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL + GT ++F P P+ Sbjct: 140 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGETGTEVSFLPSPET 199 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + ++ GGL +++ Sbjct: 200 FS-MVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHE-----LHYDGGLVEFVKY 253 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 254 IDQSKKPLLEEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 310 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + YA+ + K +++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 311 RGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 370 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE+ + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 371 RPVVESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 430 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 431 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 490 Query: 513 IMDLVQALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 491 VGTLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 550 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 + H+++ PPL+++++G S Y +E + L E Sbjct: 551 RGHIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 587 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PP+ R V +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 723 FAEPPVLR---RKDKVETLSGP--MALLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTL 777 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++ D ++LMG + + R +FIQE A + ++ Sbjct: 778 DPNVRSLLQVKVTDAT----DADSLFSRLMGDEVEPRREFIQENALSVANLD 825 >gi|332184662|gb|AEE26916.1| Topoisomerase IV subunit B [Francisella cf. novicida 3523] Length = 627 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 247/643 (38%), Positives = 359/643 (55%), Gaps = 21/643 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N +Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKSYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G S LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTSDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + + V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSFLDAV-FCWCEDPTESIKNSYVNLIPTPQDGTHVTGLKNGVYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTSFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 +RD +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VRDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTAIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE K IL + K GKI I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENEKDTILAKNSKLS-GKINIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 LL++ I+ + + L +A +R +++ + Sbjct: 586 LLQLTISDVYDDAEMLDML---LAKKRAKDRRDWLENYGDRAE 625 >gi|319898232|ref|YP_004158325.1| DNA gyrase subunit B [Bartonella clarridgeiae 73] gi|319402196|emb|CBI75727.1| DNA gyrase subunit B [Bartonella clarridgeiae 73] Length = 809 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 229/565 (40%), Positives = 336/565 (59%), Gaps = 16/565 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA L+ V+L Sbjct: 12 DYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATLVNVTL 71 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGLHGVG+SV Sbjct: 72 HADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R I F+ G+ S L+ ++ GT ITF P + F Sbjct: 131 VNALSVWLRLRIKRNGKIHEMSFTHGVADSALKIVGDCDSESGTEITFLPSSETFT-MVE 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + + A+L+ + + + + ++ GGL +++ +++ Sbjct: 190 FNFETLERRLRELAFLNSGIHILLTDQRRADVQSVE-----LHYKGGLVEFVKHIDQSKR 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + EK G +V+ A+ W + ++ + N I +GGTH +G R ALTR Sbjct: 245 ALIDNPIYIANEKDGI---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTR 301 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + + VEN Sbjct: 302 QINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVEN 361 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + +L ++P EA + V+E + R RK RE RK A+ LPGKLADC Sbjct: 362 LVNEGLSAWLEEHPNEAKIFISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADCQ 421 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ +++ I L+ Sbjct: 422 ERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTLI 481 Query: 518 QALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++ Sbjct: 482 TALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQ 541 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++++G Y +E ++ L Sbjct: 542 PPLYKVSRGKSFQYIKNEAAFEEFL 566 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE K+GK + + R+KGLGEM A QL ET +D + RTLL+V+IN D Sbjct: 727 LLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDAT----DADSLF 782 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQ+ A + ++ Sbjct: 783 SRLMGDEVEPRRAFIQDNALSVANLD 808 >gi|197311443|gb|ACH61925.1| DNA gyrase beta subunit [Acholeplasma sp. N93] Length = 549 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 225/563 (39%), Positives = 329/563 (58%), Gaps = 16/563 (2%) Query: 67 GGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPN 126 G T E+ LHHL E++DN++DE +AGYA+ I+V + + V DNGRGIPV+ HPK Sbjct: 1 GSTGERGLHHLVWEIVDNSIDEALAGYASTIKVEVLPGDIIQVTDNGRGIPVDIHPK-TG 59 Query: 127 KSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR 186 + +E ILTTLHAGGKFD +Y++SGGLHGVG SVVN LS V + + T + Q++ Sbjct: 60 RPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSTWYKVEIHKDGTAYEQRYEY 119 Query: 187 GIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 GIP L+ +K GT TF DPKIF + ++ L Q A+L+ + Sbjct: 120 GIPAYDLKIIGPT-DKTGTITTFLADPKIFTETTHYNIETLKNRIQQLAFLNKGLMITLI 178 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + +E F++ GG+ Y+ +++S I E+ E+ G TVE A+ Sbjct: 179 DSR-----TEERYEETFHYEGGIIEYVHYLNQSKSKIHPEVIYIDKEQDGI---TVEIAL 230 Query: 307 AWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMIS 365 + + S+ N I T EGG HE G ++ALTR + KYA+ + K+ +I +D Sbjct: 231 QYVDSYSPNIYSFTNNISTTEGGMHEDGFKLALTRVLSKYADDQKMKKDDAISGEDTREG 290 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 I+SV EP+F GQTKTKL + + + ++ + +L++NP +A ++E VI Sbjct: 291 LTAIISVKHPEPQFEGQTKTKLGNPEVRSITSQITQEALERFLLENPAQAKSIVEKVILA 350 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R+ RK +E RK+ + L KLADC +EL+IVEGDSAGGSAKQ R+ Sbjct: 351 TRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSELYIVEGDSAGGSAKQGRDS 410 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDA 544 QA+LPLRGK+LNV A +K+ NN++I++L+QA+G ++ RY K++IMTDA Sbjct: 411 EFQAILPLRGKVLNVEKARLDKMLNNKEIVNLIQAMGTGISDEFDITKSRYHKIVIMTDA 470 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHI +LLLTF ++ M LI+ +++ PPL++IT G VYA+ +E ++ + Sbjct: 471 DVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKITWGKNLVYAYSDEEMNAVVAK- 529 Query: 605 KKHGKGKIEISRFKGLGEMLASQ 627 + K I R+KGLGEM A Q Sbjct: 530 ---AESKPSIQRYKGLGEMNAEQ 549 >gi|304570783|ref|YP_002515534.2| DNA gyrase subunit B [Caulobacter crescentus NA1000] Length = 821 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 232/605 (38%), Positives = 349/605 (57%), Gaps = 26/605 (4%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLF 78 +E + +P + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ Sbjct: 2 TENTEDQVPDLSTPEMTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMV 61 Query: 79 SEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLH 138 EV+DNA+DE +AG+A ++V L+ +G +TV D+GRGIPV+ H + S E+I+T LH Sbjct: 62 YEVVDNAIDEALAGHATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLH 120 Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK 198 AGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R + +F RG ++ L+ Sbjct: 121 AGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGD 180 Query: 199 V----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 GT +TF P F FD L + A+L+ V + Sbjct: 181 SPVRTEGPKAGETLTGTEVTFFPSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDH 239 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 +++ P +E+ ++ GG++ +++ + ++ + K K ++ A+ W Sbjct: 240 RDV-----EPWEEKLFYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKV---EIDLALWW 291 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ + N I +GGTH S R ALTR I YAE + K +S+ +D Sbjct: 292 NDSYHEQMLCFTNNIPQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREG 351 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 +LSV + +P+F+ QTK KLVS + + VE + + + ++P EA ++ + E Sbjct: 352 LTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEA 411 Query: 426 SEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R RK RE RK+A+ LPGKLADCS+ +E+FIVEGDSAGGSAKQARNR Sbjct: 412 AAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNR 471 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTD 543 NQAVLPLRGKILNV A +K+ ++ QI L+ ALG R + + +RY K+++MTD Sbjct: 472 DNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTD 531 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 ADVDGAHI +LLLTFFY++M +LIE+ ++++ PPL++ ++G S Y D+ L + Sbjct: 532 ADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVD 591 Query: 604 FKKHG 608 G Sbjct: 592 EGVDG 596 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ G+ + I R+KGLGEM QL ET +DA RTLL+V +N D D Sbjct: 739 DLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNH----ADDADDM 794 Query: 659 INKLMGTKADERFKFIQERASFID 682 ++LMG + R +FIQE A + Sbjct: 795 FSRLMGDLVEPRREFIQENALDAE 818 >gi|254283642|ref|ZP_04958610.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B] gi|219679845|gb|EED36194.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B] Length = 810 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 236/583 (40%), Positives = 347/583 (59%), Gaps = 20/583 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + + + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG Sbjct: 2 SETTGDSMNEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + I+V + + +TV D+GRGIP E H S E+I+T LHAGGKFD++TY++SG Sbjct: 62 HCSQIDVIIHPDESVTVADDGRGIPTETHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSG 119 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS+ L +T+ RQN ++ Q + G+P SPL + GT + F+P Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQNKLYEQIYRHGVPDSPLAVVGETTE-TGTAVRFKPS 178 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 P+ F + F L K + A+L+ VK ++ + E + + GGL + Sbjct: 179 PETFTNI-EFHFDVLGKRLRELAFLNSGVKIVLKDERS-------GKSETYAYDGGLHAF 230 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 +Q N++ I+ G VE A+ W + I Y N I +GGTH Sbjct: 231 VQFLNSNKTPINGVFHFMTEVDGGV---GVEVALQWNDSFQENIFCYTNNIPQRDGGTHL 287 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS Sbjct: 288 AGFRSALTRTLNNYIEREGLAKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVS 347 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLR 448 + + VE + F +L++NP EA ++ +++ + R RK RK A+ Sbjct: 348 SEVKTAVEQTMGAAFADFLLENPAEAKLVVGKMLDAARAREAARKARDMTRRKGALDIAG 407 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADC + EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ Sbjct: 408 LPGKLADCQERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKML 467 Query: 509 NNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++Q++ +V ALGC +S++ + LRY +IIMTDADVDG+HI +LLLTFF+++M +LI Sbjct: 468 SSQEVGTMVTALGCGIGKSEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELI 527 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 E+ H+F+ PPL++I++G S Y DE ++ L E G G Sbjct: 528 ERGHVFIAQPPLYKISRGKSSQYLKDEPALERYLTEGALDGAG 570 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 +G K + D + L + I R+KGLGEM QL ET MD R +LR Sbjct: 714 KRGEKVLETTD---FTEGLTWLLSEARKGYSIQRYKGLGEMNPDQLWETTMDPEHRRMLR 770 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V+I + LMG + R +FI+ A ++++ Sbjct: 771 VKIEDAI----LADQMFTTLMGDDVEPRREFIEANALAVENLD 809 >gi|171463638|ref|YP_001797751.1| ATP-binding region ATPase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193176|gb|ACB44137.1| ATP-binding region ATPase domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 662 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 237/674 (35%), Positives = 349/674 (51%), Gaps = 44/674 (6%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y SSI++L+GLEPVR R GMY T H+ EV+DNA DE + G+ Sbjct: 2 ATRKTSEYSESSIQVLKGLEPVRQRSGMY---TRTDNPLHIIQEVLDNASDEALGGFGKQ 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGG 153 I V++ +G ++V D+GRGIPV HP +EI+ T LHAGGKF+ Y SGG Sbjct: 59 IIVTMHTDGSVSVEDDGRGIPVGMHP-TEKLPVVEIVFTQLHAGGKFEKGTGGAYAFSGG 117 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR--NKRGTRITFRP 211 LHGVG+SV NALS L VTV R + F+ G + L+ + GTR+ P Sbjct: 118 LHGVGVSVTNALSKRLEVTVWRDGQKSTLTFADGKVIEKLKSNPSPKEDKSHGTRVRAWP 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D K F A L+++ +SKA L VK +K + + + + GL+ Sbjct: 178 DGKYFDGLAIPIPE-LIRLLRSKAVLLPGVKVTLIQEKS-------GDTQTWQYAQGLRG 229 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVE----------WAIAWCEENPEITSYCNT 321 YL + + I + E+ T G + + P SY N Sbjct: 230 YLNEAIAQAGHGAEVISPFEGEQYATGSGDNDSFAEGEGAAWVVCWTEDGAPVRESYVNL 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFA 380 I T GGTHESGLR L +K + E+ + + ++ +D+ A ILS + +P+F Sbjct: 290 IPTPAGGTHESGLREGLFNAVKGFIEMHALQPKGVKLMPEDVFARASFILSAKVLDPQFQ 349 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQ K +L S DA R V ++ + +L Q+ KL + VI++++ R R ++ E + Sbjct: 350 GQIKERLNSRDAVRLVSGYVKSALELWLNQHVDYGRKLADLVIKQAQARTRAGQKVEKKK 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + L PGKL DC E+F+VEGDSAGGSAK RN+ QA+LPLRGK+LN Sbjct: 410 SSGVAVL--PGKLTDCESQDISMNEIFLVEGDSAGGSAKMGRNKEYQAILPLRGKVLNTW 467 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLT 557 A +++ N ++ D+ A+G D LRY KV I++DADVDGAHI LLLT Sbjct: 468 EAERDRLFANNEVHDIAVAIGVDPHGFNDNPDLSNLRYGKVCILSDADVDGAHIQVLLLT 527 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEEFKKHG--K 609 FY+ LI+ H+++ PPLFR+ + + +YA D Q I ++ +K G + Sbjct: 528 LFYKHFPKLIDLGHVYISRPPLFRVDAPARDKKPAQKIYALDANELQAIEDKLRKDGVKE 587 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KAD 668 +ISRFKGLGEM A QL +T ++ + R LL V + +T +++ LMG ++ Sbjct: 588 AAWQISRFKGLGEMSAEQLWDTTLNPDTRRLLPVTLGTWTED--ETFKTMDMLMGKSESG 645 Query: 669 ERFKFIQERASFID 682 R + +ER + ++ Sbjct: 646 ARRDWFEERGNEVE 659 >gi|119713347|gb|ABL97411.1| DNA topoisomerase IV subunit B [uncultured marine bacterium EB80_02D08] Length = 631 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 244/647 (37%), Positives = 361/647 (55%), Gaps = 22/647 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A ++YDA +I +L GL+PVR RPGMY TD +HL EV+DN++DE ++GY + I+V Sbjct: 2 AKNSYDAQAIEVLSGLDPVRKRPGMY---TDTSNPNHLIQEVLDNSVDEALSGYCSNIKV 58 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 S+ +GF+ V D+GRG+P++ HP+ S +E+IL LHAG KF Y SGGLHGVG+ Sbjct: 59 SVMKDGFIKVSDDGRGMPIDEHPEH-KVSGVELILCKLHAGAKFSGDDYNFSGGLHGVGV 117 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 SVVNALSDEL V V R + + F+ G +S LE V GT I F+P+P F Sbjct: 118 SVVNALSDELEVRVKRSSKEYQISFNNGEKVSELEPIGDVGPRNSGTSIKFKPNPSYFET 177 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 +L + ++KA L + + +K+ +K + +YF GLKTYL E Sbjct: 178 T-EIQIKKLKHLLKAKAVLCPGLTIDFVNEKKSDDK------QRWYFEDGLKTYLIESSE 230 Query: 279 NRSLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVA 337 LI + + V W++ +N +Y N I T +GG+H +G + Sbjct: 231 GADLILQDSIVCSKKSDAQELEFAVNWSL-RTPKNKLDETYVNLIPTAQGGSHLNGFKSG 289 Query: 338 LTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 + IK++ + + + I +DD++ SA+ I+S ++ P+FAGQTK +L S D V Sbjct: 290 ILDSIKEFCDYRNLLPKGLKINADDVLNSAIFIISSKLQNPQFAGQTKERLDSKDHMSFV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 + +D +L + E K+ E I ++ R + E + R LPGKL+DC Sbjct: 350 ASTTKDILSIWLNTHTEEGEKIAELAIMSAQTRAKVSNIVERKKT--FRGPALPGKLSDC 407 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + TELF+VEGDSAGGSAKQAR RS QA++PLRGKILN S +I +Q+I +L Sbjct: 408 NSQDLNETELFLVEGDSAGGSAKQARERSFQAIMPLRGKILNTWDLESTEIIKSQEIKNL 467 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 A+G + LRY K+ I+ DAD DG HIA+LL F + L+++ +++ Sbjct: 468 STAIGVLPGNNDL-SSLRYGKICILADADSDGLHIATLLCALFLRHYKSLVQEGRIYISM 526 Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEF-KKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+RI +YA D+ + +I+ EF KK GK KI I RFKGLGEM QL+ET MD Sbjct: 527 PPLYRIDSAKDVLYALDDNQRDEIVAEFKKKKGKPKINIQRFKGLGEMNPPQLRETVMDP 586 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 R L+++ I+ N+ ++K A R ++++++ S Sbjct: 587 LTRQLVQLSISSSDNANSMMDLLLSK---KNASARKEWLEKKGSLAK 630 >gi|28572427|ref|NP_789207.1| DNA topoisomerase IV subunit B [Tropheryma whipplei TW08/27] gi|28410558|emb|CAD66944.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27] Length = 662 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 235/674 (34%), Positives = 337/674 (50%), Gaps = 39/674 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S++ +Y+A I +LEGL VR RPGMYIG TD L H E+IDN++DEV+AG+ N++ Sbjct: 2 SSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVVN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L G+ +V D GRGIPV+ K + +E++ T LHAGGKF Y SGGLHGVG Sbjct: 62 ITLHGDNSFSVQDFGRGIPVDIESK-TGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS++L V V R + +F + K + N GTR+ F PDP IFG Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFGS 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A L + A+L ++ E + + + F GG K +++ Sbjct: 181 -AEICIESLHQRAMQTAFLVPGLRV-------NIEDRVLGKSSSYLFEGGCKQFVEHLSA 232 Query: 279 NRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEIT-SYCNT 321 + GK V+ A+AW + S+ N Sbjct: 233 GELITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNV 292 Query: 322 ILTDEGGTHESGLRVALTRGI-KKYAELTQNKRAISIISDDL--MISAVGILSVFIREPE 378 I T +GGTH SG AL + I + ++ ++ + + ++SV + EP+ Sbjct: 293 IETPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLV--QNPIEATKLLEWVIERSEERLRRRKQR 436 F GQTK L + + V N + D + + ++LE V+ + RL R R Sbjct: 353 FEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASR 412 Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E RK A+ LP KL DC N + +ELFIVEGDSA G+A++ARN QA+LP+RGK Sbjct: 413 ETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGK 472 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A N + ++Q +G + S + RY KVIIM+DADVDGAHI LL Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFR--ITQGTKSVYAHDEEHKQKILEEFKKHG-KGKI 612 LT F++ M +I +F PPL R + + +Y + + +L K+ G + + Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHRVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 I R+KGLGEM A QL ET MD +KRTLLR+ ++ + D LMG R + Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSD----AQQASDIFALLMGNDVAPRRE 648 Query: 673 FIQERASFIDDVGT 686 FI D + + Sbjct: 649 FIANSVVSTDRIDS 662 >gi|262281565|ref|ZP_06059344.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] gi|262257024|gb|EEY75763.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] Length = 822 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 225/581 (38%), Positives = 345/581 (59%), Gaps = 19/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 S + Q+ YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 SSESQSASQTEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I V++ + ++V DNGRGIP + HP+ S E+ILT LHAGGKFD+ Sbjct: 62 IDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPE-EGVSAAEVILTILHAGGKFDD 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +LH+ ++R + Q++ G P PL + +K GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P ++ + F+ L + + ++L+ V+ ++ E + + Sbjct: 180 TVRFWPS-ELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERINLE-------HVYDY 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL +++ E ++ ++ G VE A+ W E + + N I Sbjct: 232 EGGLSEFVKYINEGKTHLNEIFHFTADTDSGI---GVEVALQWNESYQENVRCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GG+H +G R ALTRG+ +Y E K +++ DD I+SV + +P+F+ Q Sbjct: 289 KDGGSHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ F YL++NP A + +I+ + R RK RK Sbjct: 349 TKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 +A+ LPGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 SALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++Q++ L+ ALGC R +Y + LRY K+IIMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L+E+ ++++ PPL+++ +G + Y D + + L Sbjct: 529 RQMPELVERGYIYIAQPPLYKLKKGKQEQYIKDNDALENYL 569 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + + L+E +L +G + + + ++ + + + + I R+KGL Sbjct: 714 KSWFSLLEDG-AYL--------QKGDRRIQV---ANFHQVWQHILQDSRRGMMIQRYKGL 761 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A QL ET MD R +L+V I+ + + + LMG + R FI+E A Sbjct: 762 GEMNAEQLWETTMDPENRHMLQVTIDDAI----EADRMFSCLMGDDVEPRRAFIEENALN 817 Query: 681 IDDVGT 686 D + Sbjct: 818 AD-IDA 822 >gi|115522035|ref|YP_778946.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53] gi|115515982|gb|ABJ03966.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53] Length = 813 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 245/580 (42%), Positives = 335/580 (57%), Gaps = 14/580 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + A + +A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQPVAESEPAAPIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHATRVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + V R +F+ G ++PL KRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLQLRVWRNGKEHFIEFAHGDAVAPLVVVGDSNGKRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF P+ F +D A L + A+L+ V S + EK EE Sbjct: 181 TEVTFLASPETFT-HIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVEKR-----EEMR 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG+ +++ N+ + E G VE A+ W + E + N I Sbjct: 235 YEGGVVEFVKYLDRNKKAMVPAPIMIAAELNGI---GVEAALWWNDSYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YAE K I++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRGALTRQVNGYAEGIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VEN L + + ++P EA ++ V+E + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKTIVGKVVEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ ++QI L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 472 RFDKMLGSEQIGTLITALGTGIGRDDFDLAKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M LIE L++ PPL+++T+G Y DE + L Sbjct: 532 QMPSLIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM SQL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R FIQE + +V Sbjct: 787 FTKLMGDVVEPRRDFIQENSLSA-NVD 812 >gi|86747132|ref|YP_483628.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2] gi|86570160|gb|ABD04717.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2] Length = 813 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 245/582 (42%), Positives = 337/582 (57%), Gaps = 16/582 (2%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82 + P + + A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+ Sbjct: 2 TEPARQPIAETPSPVPAE--YGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 59 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DNA+DE +AG+A +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGK Sbjct: 60 DNAIDEALAGHATAVEVVLNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGK 118 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 FD ++Y++SGGLHGVG+SVVNALS +L + V R +F+ G ++PL + Sbjct: 119 FDQNSYKVSGGLHGVGVSVVNALSSKLVLRVWRNGKEHIIEFAHGDAVAPLSVVGDANGR 178 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 RGT +TF P+ F +D A L + A+L+ V S + EK EE Sbjct: 179 RGTEVTFFASPETFT-HIEYDFATLEHRLRELAFLNSGVNIVLSDMRHPVEKR-----EE 232 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNT 321 + GG+ +++ N+ + + G VE A+ W E E + N Sbjct: 233 MRYEGGVTEFVKYLDRNKKPMVPAPIVLAADLNGI---GVEAALWWNETYHENVLCFTNN 289 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAG 381 I +GGTH +G R ALTR + YA+ K I++ DD +LSV + +P+F+ Sbjct: 290 IPQRDGGTHLAGFRAALTRQVNGYADSNAKKEKIALTGDDCREGLTAVLSVKVPDPKFSS 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNR 440 QTK KLVS + + VEN L + + ++P EA ++ VIE + R RK RE R Sbjct: 350 QTKDKLVSSEVRPVVENVLNEALAAWFEEHPAEAKVIVGKVIEAAAAREAARKARELTRR 409 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 410 KGALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVE 469 Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A +K+ ++QI L+ ALG R + LRY K+I+MTDADVDGAHI +LLLTFF Sbjct: 470 RARFDKMLGSEQIGTLITALGTGIGRDDFDIAKLRYHKIILMTDADVDGAHIRTLLLTFF 529 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++M LIE L++ PPL+++T+G Y DE ++ L Sbjct: 530 FRQMPALIEGGFLYIAQPPLYKVTRGKSEQYLKDERALEEYL 571 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM SQL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R +FIQE Sbjct: 787 FTKLMGDVVEPRREFIQEN 805 >gi|39933084|ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] gi|39652709|emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] Length = 813 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 245/580 (42%), Positives = 340/580 (58%), Gaps = 14/580 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + A + A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + V R + +F+ G ++PL+ KRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF + F +D A L + A+L+ V S + EK EE Sbjct: 181 TEVTFYASAETFT-HIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKR-----EEMR 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG+ +++ N+ I E G VE A+ W + E + N I Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIM---VEAALWWNDTYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR I YAE K +++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VEN + + +L ++P EA ++ V+E + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ +++QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M LIE +L++ PPL+++T+G Y DE + L Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM SQL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R +FIQE Sbjct: 787 FTKLMGDVVEPRREFIQEN 805 >gi|192288437|ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1] gi|192282186|gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 813 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 245/580 (42%), Positives = 340/580 (58%), Gaps = 14/580 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + A + A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + V R + +F+ G ++PL+ KRG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF + F +D A L + A+L+ V S + EK EE Sbjct: 181 TEVTFYASAETFT-HIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKR-----EEMR 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG+ +++ N+ I E G VE A+ W + E + N I Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIM---VEAALWWNDTYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR I YAE K +++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VEN + + +L ++P EA ++ V+E + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 ALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ +++QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M LIE +L++ PPL+++T+G Y DE + L Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM SQL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R +FIQE Sbjct: 787 FTKLMGDVVEPRREFIQEN 805 >gi|157373150|ref|YP_001471750.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] gi|157315524|gb|ABV34622.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 813 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 226/583 (38%), Positives = 345/583 (59%), Gaps = 18/583 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 + N + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE + Sbjct: 2 NNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ N + +++ +G ++V D+GRGIPV HP+ S E+I+T LHAGGKFD+++Y++ Sbjct: 62 AGHCNDVIITIHADGSVSVKDDGRGIPVAIHPE-EGISAAEVIMTVLHAGGKFDDNSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS +L +T+ R ++ Q ++ G P P++ N GT I F Sbjct: 121 SGGLHGVGVSVVNALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDATN-TGTEIRFW 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 P F D F L K + ++L+ V +++ + E F + GG+ Sbjct: 180 PSTDTFTDVL-FHFDILAKRVRELSFLNSGVGVRLVDERDNRD-------EFFKYDGGIS 231 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++ N++ ++ E+F E+ TVE A+ W + I + N I +GGT Sbjct: 232 AFVDYLNVNKTPVNKEVFHFIQERDD--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGT 289 Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR + Y E K DD ++SV + +P+F+ QTK KL Sbjct: 290 HLAGFRGALTRNLNTYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446 VS + + VE + + YL+++P EA ++ +I+ + R RK R RK A+ Sbjct: 350 VSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDL 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K Sbjct: 410 GGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 469 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q++ L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M + Sbjct: 470 MLSSQEVATLITALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LIE+ +++ PPL+++ +G + Y D+ + L G Sbjct: 530 LIERGFVYIAQPPLYKVKKGKQEQYLKDDPALTEFLTNLALDG 572 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ + + I R+KGLGEM QL ET MD R +L V I + Sbjct: 730 EALDWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAI----AADQL 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 786 FTCLMGDQVEPRREFIESNALNVANLD 812 >gi|254500251|ref|ZP_05112402.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11] gi|222436322|gb|EEE43001.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11] Length = 820 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 239/581 (41%), Positives = 342/581 (58%), Gaps = 16/581 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 P+ A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 7 MSTPEPGATPEAENGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 66 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+ + V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD Sbjct: 67 IDEALAGHADHVTVTLNPDGSVTVSDNGRGIPTDLHSE-EGVSAAEVIMTQLHAGGKFDQ 125 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R + F+ G + PLE K+GT Sbjct: 126 NSYKVSGGLHGVGVSVVNALSTKLDLRIWRNDQEHFMTFAHGDAVGPLEVVGPANGKKGT 185 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF P + F FD L + A+L+ + + + + + EE ++ Sbjct: 186 EVTFLPSSETFTKT-EFDFGTLEHRLRELAFLNSGARIILTDKRGVED-----VVEELFY 239 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + + EK G TVE A+ W + E + N I Sbjct: 240 DGGLEAFVRYLDRAKHPLIETPIAVRAEKDGI---TVEAAMWWNDSYHEQVLCFTNNIPQ 296 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + YAE T K +S+ DD +LSV + +P+F+ Q Sbjct: 297 RDGGTHLAGFRGALTRQVTGYAESTGLMKKEKVSLSGDDCREGLTCVLSVKVPDPKFSSQ 356 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS + + VEN + +L +NP A ++ V+E + R RK RE RK Sbjct: 357 TKDKLVSSEVRPVVENLISQTLSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRK 416 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + A ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV Sbjct: 417 GALDVASLPGKLADCQERDASKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVER 476 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ +I L+ ALG + ++ E LRY K+IIMTDADVDGAHI +LLLTFF+ Sbjct: 477 ARFDKMLSSNEIGTLITALGTGIGKEEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFF 536 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE ++++ PPL+++ +G Y D+E + L Sbjct: 537 RQMPELIENGYVYIAQPPLYKVKRGQSEQYLKDQEALENYL 577 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ I + R+KGLGEM QL ET +D N R+LL+V++ D D Sbjct: 736 RALLQHIFAFGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKV----READDADD 791 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + + R +FIQ+ A + ++ Sbjct: 792 IFTKLMGDEVEPRREFIQDNALAVANLD 819 >gi|149185061|ref|ZP_01863378.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21] gi|148831172|gb|EDL49606.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21] Length = 841 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 221/601 (36%), Positives = 352/601 (58%), Gaps = 27/601 (4%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + N + YD+ SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA Sbjct: 1 MDENTPESGENAPKKNAYDSDSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF-- 143 +DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K S E+I+T LHAGGKF Sbjct: 61 IDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGKFEN 119 Query: 144 --DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN 201 D++ Y++SGGLHGVG+SVVNALS+ L + + R +F G + L Sbjct: 120 TSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVESLRVVGDAPP 179 Query: 202 ----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEI 251 K+GTR+TF+ + F + +D +L + A+L+ V+ ++ Sbjct: 180 VASNGDENGLKKGTRVTFKASEETFKNVIEYDFDKLEHRYRELAFLNSGVRILLRDNR-- 237 Query: 252 AEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCE 310 P + + ++ GG+ +++ N+ + +E + EK+G +EW ++ Sbjct: 238 ---PEEPLEHDLFYEGGIAAFVKYLDRNKQALVAEPISVSAEKEGIGIDVALEWNDSY-- 292 Query: 311 ENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVG 368 + + N I +GGTH + R ALTR + YA + K +S+ +D+ Sbjct: 293 -YENVLCFTNNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVSLSGEDMREGLTA 351 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEE 428 I+SV + +P+F QTK KLVS + ++ +E+ + + +L +NP +A ++++ VI+ + Sbjct: 352 IVSVKLPDPKFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPNDAKQIIQKVIDAAAA 411 Query: 429 RLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 R R+ RE++RK A+ LPGKL+DC + A ELF+VEGDSAGGSAK R+ QA Sbjct: 412 REAARRAREMSRKGAMSIASLPGKLSDCRERDASKAELFLVEGDSAGGSAKNGRDSQYQA 471 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548 +LPL+GKILNV A ++I +++++ L+QA+G R ++ E LRY K++IMTDADVDG Sbjct: 472 ILPLKGKILNVERARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDG 531 Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 AHI +LLLTFF+++M ++++ HLF+ PPL+++T+G VY D+ + L E G Sbjct: 532 AHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLYKVTRGKSEVYLKDQPAFDRYLIEAGLSG 591 Query: 609 K 609 + Sbjct: 592 R 592 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++++ G+ +++SRFKGLGEM A QL ET +D R LL+V++ T + Sbjct: 758 QLVDAVMAAGRKGLKVSRFKGLGEMDAEQLWETTLDPENRALLQVKVED----ADVTDEI 813 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ A + ++ Sbjct: 814 FTRLMGDVVEPRREFIQANALNVANLD 840 >gi|304394414|ref|ZP_07376337.1| DNA gyrase, B subunit [Ahrensia sp. R2A130] gi|303293854|gb|EFL88231.1| DNA gyrase, B subunit [Ahrensia sp. R2A130] Length = 858 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 242/607 (39%), Positives = 348/607 (57%), Gaps = 17/607 (2%) Query: 4 DSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPG 63 DS D +K + + S S+ Y A SI++L+GL+ VR RPG Sbjct: 17 DSDDFVCLRESAKTSPVFAARKDDRLTEPTPENTPSNSEEYGADSIKVLKGLDAVRKRPG 76 Query: 64 MYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 MYIG TD+ LHH+ EV+DN +DEV+AG+A+ + V+++ +G +TV DNGRGIPV+ H Sbjct: 77 MYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHADAVNVTINNDGSVTVTDNGRGIPVDMHE 136 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 + S E+I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALS L + +AR + Sbjct: 137 E-EGMSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVSLKLRIARNDKWHEI 195 Query: 183 KFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 F+ G+ PLE GT +TF P + F + FD RL + A+L+ Sbjct: 196 SFTHGVSDGPLEIVGDAEAGYSGTELTFMPSSETFTNI-KFDFDRLEHRLRELAFLNSGC 254 Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 + S D+ A+K Y+ GGLK +++ + + K+E+ G T Sbjct: 255 RIILSDDRGGADKQTE-----LYYEGGLKEFVRYLDRAKGALIEAPIYLKSERDGI---T 306 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISII 358 VE A+ W + + + N I +GGTH +G R ALTR + YA+ K +S+ Sbjct: 307 VELALWWNDSYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYADAQGIIKKEKVSLT 366 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKL 418 DD +LSV + +P+F+ QTK KLVS + + VE + + + +NP +A + Sbjct: 367 GDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNETLKEWFEENPADAKTV 426 Query: 419 LEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGS 477 + V+E + R RK RE+ R+ + LPGKLADC + +E+FIVEGDSAGGS Sbjct: 427 VSKVVEAATAREAARKARELTRRKGVLDIASLPGKLADCQEKDPALSEIFIVEGDSAGGS 486 Query: 478 AKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYE 536 AKQ R+R NQA+LPLRGK+LNV A +K+ +++QI L+ ALG + RY Sbjct: 487 AKQGRSRKNQAILPLRGKVLNVERARFDKMLSSEQIGTLITALGTGIGPDEFNLDKARYH 546 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596 KVIIMTDADVDGAHI +LLLTFF+++M +LIE+ +L++ PPL+ I +G Y DEE Sbjct: 547 KVIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQPPLYSIKRGKSLQYLKDEEA 606 Query: 597 KQKILEE 603 K+ E Sbjct: 607 KENYFIE 613 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +LE K G+ I + R+KGLGEM A QL ET +D + R+LL+V++ + D D Sbjct: 774 RSLLEAVFKAGEKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKVTE----ASDADD 829 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R FIQ+ A + ++ Sbjct: 830 LFTRLMGEEVEPRRNFIQDNALSVANLD 857 >gi|304309656|ref|YP_003809254.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium HdN1] gi|301795389|emb|CBL43587.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium HdN1] Length = 807 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 228/573 (39%), Positives = 345/573 (60%), Gaps = 20/573 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + + + YD+SSI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ Sbjct: 1 MSQEEDTKGYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGF 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 I V++ + +TV D+GRGIPV+ HP+ S E+I+T LHAGGKFD++TY++SGG Sbjct: 61 CKEITVTIHQDETITVCDDGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDDNTYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+EL +T+ R+ ++ Q + G+P PL + GT++ F+P Sbjct: 120 LHGVGVSVVNALSEELVLTIRRKGKVWQQIYRHGVPQEPLAPIGESS-TTGTQVHFKPSS 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + F L + + ++L+ VK ++ + F + GGL+ ++ Sbjct: 179 ETFSNI-EFSHEILARRLRELSFLNSGVKILLKDER-------TDATDVFCYEGGLEQFV 230 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + N++ ++ +EK G +VE A+ W + + Y N I +GGTH + Sbjct: 231 KFLNLNKTPLNKVF-YFSSEKDGV---SVEVALQWNDGYQENVRCYTNNIPQRDGGTHLA 286 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R A+TR I +Y + K IS DD V I+SV + +P+F+ QTK KLVS Sbjct: 287 GFRSAMTRAINQYLDQEGITKKHKISASGDDAREGLVAIVSVKVGDPKFSSQTKDKLVSS 346 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRL 449 + + VE + + YL + P EA + + +I+ + R RK R RK A+ L Sbjct: 347 EVKPAVETLMFEKLSEYLAEQPNEAKIVCQKIIDAARAREAARKAREMTRRKGALDIAGL 406 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + Sbjct: 407 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLS 466 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + ++ L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE Sbjct: 467 SAEVGTLITALGCGIGREEYDPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 526 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 + ++++ PPL++I +G + Y D+E L Sbjct: 527 RGYIYIAQPPLYKIKKGKQEQYLKDDEALSHYL 559 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 27/147 (18%) Query: 550 HIASLLLTFF----YQEM-------YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQ 598 H +L FF Y+ +LI++ + +G K Sbjct: 676 HHYTLGRDFFISNDYRMFTTLGAKVRNLIQEGAF---------VKKGEKV---KTVSSFP 723 Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +++E + +I R+KGLGEM QL ET MD R +LRV + + Sbjct: 724 EVVEWLMDESRRGHQIQRYKGLGEMNPEQLWETTMDPEMRRMLRVTVEDAI----AADQI 779 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A + ++ Sbjct: 780 FTTLMGDAVEPRRDFIETNALNVANLD 806 >gi|293394324|ref|ZP_06638624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM 4582] gi|291423302|gb|EFE96531.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM 4582] Length = 606 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 237/624 (37%), Positives = 342/624 (54%), Gaps = 26/624 (4%) Query: 64 MYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPK 123 MY TD +HL EVIDN++DE +AG+A I+V L + L VVD+GRG+PV+ HP+ Sbjct: 1 MY---TDTSRPNHLGQEVIDNSVDEALAGHAKRIDVILHADQSLEVVDDGRGMPVDIHPE 57 Query: 124 FPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQK 183 +E+IL LHAGGKF N Y+ SGGLHGVGISVVNALS + V V R I+S Sbjct: 58 -EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVKRDGNIYSIA 116 Query: 184 FSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F G + L + GT + F PD + F D F +RL + ++KA L V+ Sbjct: 117 FENGDKVQDLGVTGSCGKRNTGTSVHFWPD-EQFFDSPRFSVSRLSHLLKAKAVLCPGVE 175 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + E + + + GL YL + + F G V Sbjct: 176 IYFIDKVNNTE-------QRWCYQDGLTDYLMEAVNGLITLPEAPFVGSFAGDIE---AV 225 Query: 303 EWAIAWCEENPE--ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ-NKRAISIIS 359 +WA+ W E E SY N I T +GGTH +GLR L ++++ E R + + + Sbjct: 226 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEFRNILPRGVKLSA 285 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+ +LSV +++P+FAGQTK +L S V ++D F +L QN A +L Sbjct: 286 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLA 345 Query: 420 EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAK 479 E I ++ RLR ++V RK LPGKLADC+ TELF+VEGDSAGGSAK Sbjct: 346 ELAISSAQRRLR--AAKKVVRKKLTSGPALPGKLADCTAQDLSLTELFLVEGDSAGGSAK 403 Query: 480 QARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVI 539 QAR+R QA++PL+GKILN S+++ +Q++ D+ A+G S LRY K+ Sbjct: 404 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKIC 462 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 I+ DAD DG HIA+LL F + L++ H+++ PPL+RI G + YA DEE K Sbjct: 463 ILADADSDGLHIATLLCALFVRHFRSLVKGGHVYVAMPPLYRIDLGKEVYYALDEEEKAG 522 Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE+ K+ KGK + RFKGLGEM QL+ET +D N R L+++ +N + T + Sbjct: 523 VLEQLKRK-KGKPNVQRFKGLGEMNPLQLRETTLDPNTRRLVQLTVND--EDVDQTLAMM 579 Query: 660 NKLMGTK-ADERFKFIQERASFID 682 + L+ K +++R ++Q++ + Sbjct: 580 DMLLAKKRSEDRRNWLQDKGDMAE 603 >gi|237653590|ref|YP_002889904.1| DNA topoisomerase IV subunit B [Thauera sp. MZ1T] gi|237624837|gb|ACR01527.1| DNA topoisomerase (ATP-hydrolyzing) [Thauera sp. MZ1T] Length = 662 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 253/671 (37%), Positives = 352/671 (52%), Gaps = 36/671 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 Q YD SS R+L+GLEPVR RPGMY T + H+ EVIDNA DE + G+A Sbjct: 2 AGTQGTPKQYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFA 58 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEI 150 I V+L +G +TV D+GRGIPV HP+ + + T LHAGGKFD NS Y Sbjct: 59 KKIHVTLHVDGSVTVADDGRGIPVGLHPE-EGVPVVVLAYTRLHAGGKFDKREGNSAYAF 117 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITF 209 SGGLHGVG+SV NALS + V V R+ I FS G + P+ + + GTR+ Sbjct: 118 SGGLHGVGVSVTNALSTRIEVEVRREGKIHRIDFSDGGETIGPVRVEGDCGRQTGTRVRV 177 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L ++ +SKA L V + + G + + +P GL Sbjct: 178 WPDGKYFES-PRVPMNELERLLRSKAVLLSGVAVRLDIE----QANGPALTKTWSYPDGL 232 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH----RGTVEWAIAWCEENPEITSYCNTILTD 325 YL+ + ++ K K WA+AW E SY N I T Sbjct: 233 AGYLKELAGDVEPVAPIFTAEKYAAKDDPTFAAGEGAAWALAWFESPVPSESYVNLIPTV 292 Query: 326 EGGTHESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHESGLR + +K + + R + + +D+ +LS + +P+F GQ K Sbjct: 293 NGGTHESGLRAGVFEAMKSFIDHHTLLPRGVKLQQEDVCGRMSFVLSARLLDPQFQGQVK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 KL S +A + V + LRDPF+ +L + + E I+++ R + ++ E + + + Sbjct: 353 EKLNSREAVKLVSSQLRDPFEIWLNNHVEAGRAIAELSIKQALARQKSAQKVEKKKTSGV 412 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L PGKL+DC ELF+VEGDSAGGSAK ARN+ QA+LPLRGK+ N Sbjct: 413 AVL--PGKLSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNAWEIDP 470 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ N +I D+ ALG + D LRY KV+IM+DADVDGAHI +LLLT F++ Sbjct: 471 DRLFANAEIHDIAVALGVDAHTADSPIDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFFR 530 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKI 612 LIE+ H+++ PPL+RI QG K +YA DE + E +K G I Sbjct: 531 HFPKLIERGHVYVAQPPLYRIDVPAQGKKRPPRRLYALDEGELAAMRERLEKEGFKPDAI 590 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERF 671 EI RFKGLGEM QL+ET MD R +L V++ +L+DT LMG +A R Sbjct: 591 EIGRFKGLGEMNPDQLRETTMDPATRRVLPVKV--RSGALQDTLKMFTLLMGKGEASGRR 648 Query: 672 KFIQERASFID 682 +++E+ ++ Sbjct: 649 AWMEEKGDSVE 659 >gi|149375632|ref|ZP_01893401.1| DNA gyrase, B subunit [Marinobacter algicola DG893] gi|149360034|gb|EDM48489.1| DNA gyrase, B subunit [Marinobacter algicola DG893] Length = 804 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 233/575 (40%), Positives = 344/575 (59%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY++SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ + I Sbjct: 2 SESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIG 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VIIHPDESVTVRDNGRGIPVDLH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L +T+ R ++ Q ++ G+P +PL+ + GT++ F P P+ F Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQTYNNGVPKAPLDVVGDT-DASGTKVHFIPSPETFTS 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + A+L+ V+ ++ E E F + GGL+ +++ Sbjct: 180 I-EFHWDILAKRLRELAFLNSGVRIRLQDERSGKE-------EVFEYEGGLRAFVEHLNS 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ K + G VE A+ W + I ++ N I +GGTH +G R A Sbjct: 232 NKTPINRVFHFIKEREDGI---AVEVAMQWNDAFQENIYTFTNNIPQRDGGTHLAGFRAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K +S DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRSLNNYIEHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE L F +L + P EA ++ +IE + R RK RK A+ LPGKLA Sbjct: 349 VEQELYQSFADFLQEQPSEAKLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +ELFIVEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ E LRY +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F Sbjct: 469 TLITALGCGIGREEFNPEKLRYHSLIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVF 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE+ K+ L + G Sbjct: 529 IAMPPLYKVKRGKQEQYLKDEKAKEAYLTQTALEG 563 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ K + + I R+KGLGEM QL ET MD R +++V I + Sbjct: 719 YEGALDWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAI----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + ++ Sbjct: 775 QIFTTLMGDDVEPRRLFIQSNALEVTNLD 803 >gi|220925683|ref|YP_002500985.1| DNA gyrase subunit B [Methylobacterium nodulans ORS 2060] gi|219950290|gb|ACL60682.1| DNA gyrase, B subunit [Methylobacterium nodulans ORS 2060] Length = 808 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 239/582 (41%), Positives = 349/582 (59%), Gaps = 16/582 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 A +D Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 2 AEPARDLTTDTYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A L+ V+L+ +G TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y++S Sbjct: 62 GHATLVTVTLNPDGSCTVSDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L + + R + +F G ++PL KRGT +TF P Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRGTEVTFLP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 P+ F FD A L K + A+L+ V+ + + K EE + GG++ Sbjct: 181 SPETFS-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEA 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 +++ ++ + ++ + E+ G VE A+ W + + + N I +GGTH Sbjct: 235 FVRYLDRTKTPLVAKPVVVRAERDGI---GVEVALWWNDSYHETVLPFTNNIPQRDGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR I YAE + K +++ DD I+SV + +P+F+ QTK KLV Sbjct: 292 MAGFRAALTRQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLV 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 S + + VEN L + ++L ++P EA ++ V E + R RK RE RK A+ Sbjct: 352 SSEVRPVVENVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIA 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV A +K+ Sbjct: 412 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKM 471 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q+I L+ ALG R ++ + LRY ++IIMTDADVDG+HI +LLLTFF+++M +L Sbjct: 472 LSSQEIGTLITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEL 531 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 IE+ HL++ PPL++ ++G ++Y DE + L + G Sbjct: 532 IERGHLYIAQPPLYKASKGRSAIYLKDERALEDYLIDGGIEG 573 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ +++ R+KGLGEM A QL ET +D + R+LL+V++ D D Sbjct: 725 ALFETMMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV----KDTTDADDL 780 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE A + ++ Sbjct: 781 FVKLMGDVVEPRREFIQENALNVANLD 807 >gi|254447538|ref|ZP_05061004.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015] gi|198262881|gb|EDY87160.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015] Length = 802 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 222/567 (39%), Positives = 352/567 (62%), Gaps = 18/567 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 2 SDNYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIRV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + + ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 VIHNDESVSVSDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R Q ++ +P +PLE ++ GT+ITFR +IF + Sbjct: 121 SVVNALSNKLTLEILRNGKRHIQHYTDSVPDAPLEVAGDT-DRSGTKITFRASEEIFTNV 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + L K + ++L+ ++ ++ +++ F + GG+ +++ +N Sbjct: 180 T-YHYDILAKRLRELSFLNSGIRIVLRDER------AEGKEDVFEYEGGISAFVEHLSKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + ++ T K+ VE A+ W + I Y N I +GGTH +G R AL Sbjct: 233 KTPLHEQVIHFDTSKEDI---GVEVALQWSDSYQENIFCYTNNIPQRDGGTHLAGFRGAL 289 Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + +K +S+ DD V ++SV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTLNNYIDREGVASKAKVSVSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSVV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E+A+ + +L+++P EA + +++ + R RK R RK + LPGKLAD Sbjct: 350 ESAMTEKLSEFLLEHPNEAKAIAHKIVDAARAREAARKAREMTRRKDVLDVAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +ELFIVEGDSAGGSAKQ R+R QAVLPL+GKILNV A +K+ ++ ++ Sbjct: 410 CQEKDPTQSELFIVEGDSAGGSAKQGRDRRTQAVLPLKGKILNVEKARFDKMLSSAEVGT 469 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC + ++ + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+++ Sbjct: 470 LITALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G + Y D++ L Sbjct: 530 AQPPLYKVKKGKQERYLKDDKSLTDYL 556 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K L + I R+KGLGEM QL ET +D R LL Sbjct: 705 IKRGDKIQEVQT---FGAALMWLLADARKGQMIQRYKGLGEMNPDQLHETTLDPETRRLL 761 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A + ++ Sbjct: 762 QVRIEDAV----AADEVFTTLMGDHVEPRRDFIESNALSVANLD 801 >gi|292490174|ref|YP_003525613.1| DNA gyrase subunit beta [Nitrosococcus halophilus Nc4] gi|291578769|gb|ADE13226.1| DNA gyrase, B subunit [Nitrosococcus halophilus Nc4] Length = 805 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 228/581 (39%), Positives = 349/581 (60%), Gaps = 19/581 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 AS YD+S I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ N + Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEV 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + N +T+ DNGRGIP + H + +S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SVIVHSNDTVTISDNGRGIPTDIHHE-EGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L + + R ++ Q + G+P +PL + GT I F P PKIF Sbjct: 121 GVSVVNALSSTLFLEIHRDGQVYQQHYRDGVPQAPLTTVGSTK-HSGTTIRFSPSPKIFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F+ K + A+L+ V+ ++ + KEEF + GG++ +++ Sbjct: 180 NIV-FNFDIFAKRLRELAFLNAGVRILLEDER-------VGRKEEFLYEGGIQAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F + E+ VE A+ W + + N I +GGTH +G R Sbjct: 232 KNKTPLHDNVFYFQGERDDV---VVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + +Y E K +S DD +LS+ +R+P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNQYIEREALAKKTKVSTTGDDAREGLTAVLSIKVRDPKFSSQTKEKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V+ + + F +L+++P +A + +I+ + R RK RE RK A+ LPGKL Sbjct: 349 VVDALVSEYFQSFLLEHPADAKAIGSKMIDAARAREAARKARELTRRKGALDMAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +ELF+VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 ADCQERDPTLSELFVVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSAEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+ Sbjct: 469 ATLITALGCGVGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++ PPL+++ +G + Y D+ ++ L Sbjct: 529 YIAQPPLYKVKRGKQERYIRDDAEMERYLINLAIDNAKIYS 569 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 14/115 (12%) Query: 578 PLFR-------ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKE 630 PL + + + K + L E + G+ + R+KGLGEM QL E Sbjct: 697 PLVKLITTESYVQRNDKQQPVSSIQGAVNWLMEEARRGQA---VQRYKGLGEMNPDQLWE 753 Query: 631 TAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 T M+ R L +V I + + LMG + R FI+ A + + Sbjct: 754 TTMNPATRRLSQVRIEDAI----AADEIFTTLMGDHVEPRRDFIEANALNVAHLD 804 >gi|330961508|gb|EGH61768.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 805 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNVQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|319407911|emb|CBI81565.1| DNA gyrase subunit B [Bartonella schoenbuchensis R1] Length = 809 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 235/572 (41%), Positives = 343/572 (59%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 S++ Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 5 TTSSSNSEYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 65 TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+RG+ SPL+ + GT I+F P + Sbjct: 124 HGVGVSVVNALSVWLRLQIKRNGKIHEMSFTRGVADSPLKIVGDCDTESGTEISFLPSSE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF FD L + + A+L+ V + + + + ++ GGL +++ Sbjct: 184 IFTKT-KFDFETLERRLRELAFLNSGVHILLTDQRHADV-----QSVKLHYDGGLIEFVK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ ++ EK G +VE A+ W + ++ + N I +GGTH +G Sbjct: 238 YIDQSKKVLIDNPIYITNEKDG---MSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 295 FRSALTRQINGYAESSGITKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA L+ V+E + R RK RE RK A+ LP Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 + I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++++G Y +E ++ L Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNETAFEEFL 566 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE +GK I + R+KGLGEM A QL ET +D + R+LL+V+IN D Sbjct: 726 SLLESIFVNGKKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKINDAT----DADSL 781 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQ A + ++ Sbjct: 782 FSRLMGDEVEPRRVFIQNNALSVANLD 808 >gi|264677300|ref|YP_003277206.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas testosteroni CNB-2] gi|262207812|gb|ACY31910.1| DNA topoisomerase, type IIA, subunit B, region [Comamonas testosteroni CNB-2] Length = 656 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 238/666 (35%), Positives = 344/666 (51%), Gaps = 38/666 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S+ Y SIR+L+GLEPV+ RPGMY T H+ EVIDNA DE +AGY I+ Sbjct: 4 KPSNEYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHILQEVIDNAADEALAGYGKKIK 60 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLH 155 + +G +V D+GRGIP HP+ +E++ T LHAGGKFD Y SGGLH Sbjct: 61 FIMHADGSYSVEDDGRGIPFGLHPE-EKAPVVELVFTRLHAGGKFDKGNGGAYSFSGGLH 119 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITFRPDP 213 GVG+SV NAL+ L V V R + + FS G + PL+ + K+GT + PD Sbjct: 120 GVGVSVTNALATRLEVQVHRDGQVATLVFSGGDVIEPLKVRPLQAGERKQGTTVRAWPDA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F + L+ + +SKA L V +K + + F GGL+ YL Sbjct: 180 KYFES-SALPMGELVHLLRSKAVLMPGVAVSLINEKSRD-------TQSWQFKGGLRDYL 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329 L +I G +K E A + P SY N I T GGT Sbjct: 232 AQSLHGEPVIPLFEGEGFADKNNDSFAEGEGAAWCVAFTEDGAPLRESYVNLIPTTAGGT 291 Query: 330 HESGLRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 H+SGLR L + +K + ++ + + ++ DD+ A +L+ + +P+F GQ K +L Sbjct: 292 HDSGLRDGLFQAVKAFIDMHSLLPKGVKLMPDDVFARASYVLNAKVLDPQFQGQIKERLN 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 S DA R V +R + +L ++ KL E I+ ++ R + ++ E + + + L Sbjct: 352 SRDAVRLVSGFVRPALELWLNEHVDWGKKLAEIAIKAAQTRQKAGQKVEKRKGSGVAVL- 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 PGKL DC E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN +++ Sbjct: 411 -PGKLTDCESKDIAVNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNTWEVDRDRLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G E D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 ANNEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFKHFPK 529 Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617 LIE H+ + PPLFR+ +G K VYA D I+E+ K G + K ++SRF Sbjct: 530 LIEAGHIHVALPPLFRVDVPARGKKPAIKVYALDAGELDAIIEKCAKDGVPREKCQVSRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676 KGLGEM A QL ET ++ + R LL V+ ++ + KLMG +A R + ++ Sbjct: 590 KGLGEMNAEQLWETTLNPDTRRLLPVQFMN--LDFAQSEAVVTKLMGKGEAAARRELMEL 647 Query: 677 RASFID 682 ++ Sbjct: 648 HGDAVE 653 >gi|113868628|ref|YP_727117.1| DNA topoisomerase IV subunit B [Ralstonia eutropha H16] gi|113527404|emb|CAJ93749.1| Topoisomerase IV subunit B [Ralstonia eutropha H16] Length = 663 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 245/668 (36%), Positives = 346/668 (51%), Gaps = 34/668 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S + Y SSIR+L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ + I Sbjct: 3 SKTSQYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIVQEVIDNASDEALGGHGSEIL 59 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155 V+L +G L+V D+GRGIPV HP+ +EI+ T LHA K Y SGGLH Sbjct: 60 VTLHRDGSLSVEDDGRGIPVGIHPE-EGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLH 118 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRITFRPDP 213 GVG+SV NALS +L VTV R + + FS G P K E+ K GTR+ PD Sbjct: 119 GVGVSVTNALSTQLDVTVWRDSMCSTLTFSGGDVTVPLASRKIERGEKKSGTRVQVWPDA 178 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF------PG 267 + D A A L ++ +SKA L VK +K + ++ + G Sbjct: 179 -RYFDSAAIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQG 237 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEG 327 + E + G + A + P SY N I T G Sbjct: 238 SGAELVIPMFEGEHFADPDANPGDEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAG 296 Query: 328 GTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 GTHESGLR L + +K + E+ + + ++S+D+ A +LS + +P+F GQ K + Sbjct: 297 GTHESGLREGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKER 356 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK 446 L S DA R V R + +L + KL E VI +++ R R ++ E + + + Sbjct: 357 LNSRDAVRLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAV 416 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 L PGKL DC ELF+VEGDSAGGSAK R++ QA+LPLRGK+LN ++ Sbjct: 417 L--PGKLTDCESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDR 474 Query: 507 IRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 + N ++ D+ A+G E D LRY K+ I++DADVDGAHI LLLT F++ Sbjct: 475 LFANNEVHDIAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHF 534 Query: 564 YDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEIS 615 LIE ++F+ PPLFR+ +G K +YA DE I ++ K G + +IS Sbjct: 535 PKLIETGNVFVARPPLFRVDAPARGKKPAQKLYALDEGELLAIQDKLLKDGVKENSWQIS 594 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFI 674 RFKGLGEM A QL ET M+ + R LL V + L T + +N LMG +A +R ++ Sbjct: 595 RFKGLGEMSAEQLWETTMNPDTRRLLPVSL--GEYDLPQTVEMMNMLMGKGEAAQRRSWL 652 Query: 675 QERASFID 682 +E+ + ++ Sbjct: 653 EEKGNEVE 660 >gi|146329798|ref|YP_001209586.1| DNA topoisomerase IV subunit B [Dichelobacter nodosus VCS1703A] gi|146233268|gb|ABQ14246.1| DNA topoisomerase IV, B subunit [Dichelobacter nodosus VCS1703A] Length = 635 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 239/648 (36%), Positives = 348/648 (53%), Gaps = 26/648 (4%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y AS I +L+GLEPV+ RPGM+ TD HL EVIDN++DE +AG+A+ I+V+L Sbjct: 4 YQASDIELLKGLEPVKRRPGMF---TDTSRPDHLAQEVIDNSVDEALAGFAHAIDVTLYE 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G L V D+GRG+PV+ HP S +E+ILT LHAGGKF Y ISGGLHGVG++VVN Sbjct: 61 DGSLAVCDDGRGMPVDEHP-GEKISGVELILTRLHAGGKFSQKNYAISGGLHGVGVAVVN 119 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-VRNKRGTRITFRPDPKIFGDKAGF 222 ALS L V + R + G + PL K EK +N+ GTR+ F +P F A F Sbjct: 120 ALSSRLEVQIDRDGFRYQIVCEHGEVIEPLRKIEKIAKNQHGTRVRFWANPDYFE-HAQF 178 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 LL +SKA L + + + ++ + GL YL L + Sbjct: 179 SVPWLLHALKSKAVLCAGLTVHF-------HHLATEKSYQWCYENGLVAYLTDALHQETT 231 Query: 283 ISSEIFTGKT-EKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 I + F+ ++ G W N SY N I T +GGTH +GLR L Sbjct: 232 IPDQPFSLHYQDENGELDIAFSWLETVKNTNSINESYANLIPTLDGGTHVNGLRAGLVDA 291 Query: 342 IKKYAELTQNKRAISIIS-DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 ++++ + Q + +D+ +LS+ I EP+FA QTK +L S + + Sbjct: 292 LREFCDFRQLLPRGLRLLPEDIWQGCQYVLSIKIPEPQFASQTKERLTSRTCAAWINTII 351 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNI 460 D F +L Q+ KL + IER+ RLR +K+ R + LP KLADC Sbjct: 352 ADRFGLFLNQHLEWGEKLAQLAIERAYARLREQKKTPRKRH---QGAPLPSKLADCLSQE 408 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 TELF+VEGDSAGGSAKQAR+R+ QA+LPLRGKILN ++ I NQ++ D+ A+ Sbjct: 409 LQETELFLVEGDSAGGSAKQARDRNTQAILPLRGKILNTWEIAADDIMMNQEVRDIAVAI 468 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G S LRY K+ I+ DAD DG HIA+L+ + L+ HL++ PPL+ Sbjct: 469 GVAPDSDDL-SGLRYGKICILADADSDGLHIATLINALMVKHFTALVAAGHLYVAMPPLY 527 Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRT 639 R+ G K YA D++ + + ++ ++ G GKI ++RFKGLGEM QL+ET M + R Sbjct: 528 RLDAGKKVAYALDDDERNEWIKRQRRTGYTGKINVTRFKGLGEMNPQQLRETTMQPHSRR 587 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTK-ADERFKFIQERASFIDDVGT 686 L+++ ++T ++KL+ K + +R +++ + ++ Sbjct: 588 LVQLTF-----DPEETYPLMDKLLAKKRSADRRAWLEMHGNQARNLDA 630 >gi|209363643|ref|YP_001423444.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111] gi|207081576|gb|ABS76986.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111] Length = 810 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 229/562 (40%), Positives = 346/562 (61%), Gaps = 19/562 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + SA YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 4 SVSAPQKYDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCS 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V++ + ++V DNGRGIP + HP+ +S E+I+T LHAGGKFD + Y++SGGLH Sbjct: 64 HIWVTIHADCSVSVRDNGRGIPTDIHPE-EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+EL++T+ + +++Q + G+P +PL K +K GT I F+P I Sbjct: 123 GVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGK-SDKTGTEIRFKPSNAI 181 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + A+L+ V+ + ++ + F + GG+K +++ Sbjct: 182 FSNT-EFHYDILAKRLRELAFLNLGVRIELTDERS-------GRGDIFEYEGGIKAFVEH 233 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I S++F TEK VE A+ W + I + N I ++GGTH +G Sbjct: 234 LNKKKTPIHSDVFHFSTEKNDI---VVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGF 290 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++I DD +LSV + +P+F+ QTK KLVS + Sbjct: 291 RAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE+ + YL++NP +A + VI+ + R RK RK + LPG Sbjct: 351 KPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++ Sbjct: 411 KLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSA 470 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y + LRY ++I+MTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 471 EVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERG 530 Query: 571 HLFLISPPLFRITQGTKSVYAH 592 H+++ PPL+++ + + Y Sbjct: 531 HIYIAQPPLYKVKKSKQEQYVK 552 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + H + LE F + GK + I R+KGLGEM QL ET MD R Sbjct: 712 YIVRNDKRR----TVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRR 767 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL V I + + LMG + + R FI++ A ++++ Sbjct: 768 LLSVSIEDAVM----ADEIFTTLMGDQVEPRRLFIEQNALAVENLD 809 >gi|330970328|gb|EGH70394.1| DNA gyrase subunit B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 805 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 226/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDETLAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P + F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|258542323|ref|YP_003187756.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256633401|dbj|BAH99376.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256636460|dbj|BAI02429.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-03] gi|256639513|dbj|BAI05475.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-07] gi|256642569|dbj|BAI08524.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-22] gi|256645624|dbj|BAI11572.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-26] gi|256648677|dbj|BAI14618.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-32] gi|256651730|dbj|BAI17664.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654721|dbj|BAI20648.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-12] Length = 812 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 335/581 (57%), Gaps = 17/581 (2%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 D + S+ YDA+SI +L+GL+ VR RPGMYIG TD+ LHH+ E+IDNA+DE Sbjct: 2 TDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 AG+A+ V+ + +G ++V DNGRGIP + H + S E++LT LHAGGKF+ ++Y Sbjct: 62 AQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHAE-EGISAAEVVLTRLHAGGKFNQNSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG +VVNALS+ + V + R +F G +PLE GT +T Sbjct: 121 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 180 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+P + F FD L + + A+L+ ++ + +E+F++ GG Sbjct: 181 FKPSSETFPKT-DFDFTILERRLRELAFLNSGLEIVLRDAR-----VTPVREEKFFYEGG 234 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 L+ ++ +R+ + + TG E + VE+A+ W + + + N I +G Sbjct: 235 LEAFVNWLDRSRTSLFAPPITGSLE-NPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDG 293 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 G H +G R ALTR + KYAE K A S+ +D+ +LSV + +P+F+ QTK KL Sbjct: 294 GAHLAGFRQALTRVVGKYAESIAKKDAHSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKL 353 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 VS + Q V A D H+ +P EA ++ V++ + R RK RE+ R+ + Sbjct: 354 VSSEVQPVVHAAAADIISHWFETHPKEAKIVISKVLDAASAREAARKARELTRRKGVLDV 413 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC ELFIVEGDSAGG+AKQ R+R QA+LPL+GKILNV A ++ Sbjct: 414 SSLPGKLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDR 473 Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +I L+ ALG E+ LRY +++IMTDADVDG+HI +LLLTFF+ Sbjct: 474 MLGSAEIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFF 533 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ +L++ PPL+R +G + Y D+ ++ L Sbjct: 534 RQMPELIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYL 574 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 G+ + I+RFKGLGEM +QL ET +D RTLL+V + +++ D Sbjct: 732 ARLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGD----VEEAGDVFTT 787 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + ++ Sbjct: 788 LMGDIVEPRRDFIVGNALKVANLD 811 >gi|319406439|emb|CBI80079.1| DNA gyrase subunit B [Bartonella sp. 1-1C] Length = 809 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 232/572 (40%), Positives = 339/572 (59%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 D+Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA Sbjct: 5 TTSPVCDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 65 TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+ G+ PL+ + ++ GT ITF P + Sbjct: 124 HGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADFPLKIVDDCDSESGTEITFLPSSE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F FD L + + A+L+ + + + + ++ GGL +++ Sbjct: 184 TFT-MVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVE-----LHYEGGLIEFVK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + EK G +V+ A+ W + ++ + N I +GGTH +G Sbjct: 238 HIDQSKKALIDNPIYITNEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA L+ V+E + R RK RE RK A+ LP Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 + I L+ ALG + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++++G Y +E ++ L Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNEAAFEEFL 566 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE K+GK + + R+KGLGEM A QL ET ++ + RTLL+V+IN D Sbjct: 726 SLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDAT----DADSL 781 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQ+ A + ++ Sbjct: 782 FSRLMGDEVEPRRSFIQDNALSVANLD 808 >gi|302185843|ref|ZP_07262516.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae 642] Length = 805 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P + F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDSTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 E + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AGEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 718 NEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|159045895|ref|YP_001534689.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12] gi|157913655|gb|ABV95088.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12] Length = 805 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 221/573 (38%), Positives = 332/573 (57%), Gaps = 16/573 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 ++ Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 AETAQVAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGG Sbjct: 62 ADAVNVKIHADSSVSVSDNGRGIPVGVHEE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALSD L + + R +F G + LE ++ GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFEHGDTVKHLEVIGDAGDRTGTEVRFMAST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 F + + L + A+L+ V+ ++ P + E ++ GG++ ++ Sbjct: 181 GTFSNL-DYSFKTLENRLRELAFLNSGVRIILEDER-----PAEPLRSELFYEGGVREFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + +++ E E+ +E A+ W + + + N I +GGTH + Sbjct: 235 RYLDRSKTSAMEEPIFITGERDDI---GIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + + ++ DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINAYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE + + + +NP +A ++ +IE + R RK RE RKTA+ L Sbjct: 352 EVRPAVEGLVNEKLGEWFEENPAQAKVIVGKIIEAALAREAARKARELTRRKTAMDVASL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +ELF+VEGDSAGGSAKQ R+R NQAVLPLRGKILNV A +++ + Sbjct: 412 PGKLADCQEKDPAHSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I L+ ALG R ++ LRY K+IIMTDADVDGAHI +LLLTFF+++M ++IE Sbjct: 472 SQEIGTLITALGTGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPL+++ +G VY D+ + L Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALEDHL 564 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + R+KGLGEM QL ET +D RTLL+V+I L D D Sbjct: 722 ALLSTILEEGEKGQSLQRYKGLGEMNPDQLWETTLDPEARTLLQVQIED----LADADDI 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRRAFIQQNALSVENLD 804 >gi|332139414|ref|YP_004425152.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype'] gi|327549436|gb|AEA96154.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype'] Length = 806 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 229/576 (39%), Positives = 347/576 (60%), Gaps = 18/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 SA +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SAENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V + +G ++V D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 VVQIHSDGSVSVSDDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L + + R Q++ G+P +PL +K GT I F P F Sbjct: 121 GVSVVNALSSRLKLRIRRGGKAHEQEYQHGVPQAPLAVTGDT-DKTGTMIRFWPSSDTFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 D + L K + ++L+ V +++ E + F + GG+K +++ Sbjct: 180 DTL-YHYDILAKRLRELSFLNSGVSIRLKDERDGKE-------DHFMYEGGIKAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 + ++ + ++F +E++ VE A+ W + + + N I +GGTH +G R Sbjct: 232 QKKTAVHQKVFHFSSEQED--GIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRG 289 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 ALTRTLNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRP 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+A+ + +L++NP E+ + +I+ + R RK R RK A+ LPGKL Sbjct: 350 AVESAMNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y E LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++ Sbjct: 470 ATLITALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYV 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D++ L G Sbjct: 530 YIAQPPLYKVKKGKQEQYLKDDDALTNYLTGIAIDG 565 Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + E ++ L+ K I R+KGLGEM QL ET MD R +L Sbjct: 709 IKRGERKQ---PVESFKEALDWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPEGRRML 765 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A ++++ Sbjct: 766 QVTIEDAIGC----DQLFTTLMGDQVEPRREFIEANALKVENLD 805 >gi|329113486|ref|ZP_08242267.1| DNA gyrase subunit B [Acetobacter pomorum DM001] gi|326697311|gb|EGE48971.1| DNA gyrase subunit B [Acetobacter pomorum DM001] Length = 851 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 17/581 (2%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 D + S+ YDA+SI +L+GL+ VR RPGMYIG TD+ LHH+ E+IDNA+DE Sbjct: 41 TDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDE 100 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 AG+A+ V+ + +G ++V DNGRGIP + H + S E++LT LHAGGKF+ ++Y Sbjct: 101 AQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHTE-EGISAAEVVLTRLHAGGKFNQNSY 159 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG +VVNALS+ + V + R +F G +PLE GT +T Sbjct: 160 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 219 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+P + F FD L + + A+L+ ++ + +E+F++ GG Sbjct: 220 FKPSSETFPKT-DFDFTILERRLRELAFLNSGLEIVLRDAR-----VTPMREEKFFYEGG 273 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 L+ ++ +R+ + + TG E + VE+A+ W + + + N I +G Sbjct: 274 LEAFVDWLDRSRTSLFAPPITGSLE-NPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDG 332 Query: 328 GTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 G H +G R ALTR + KYAE K A+S+ +D+ +LSV + +P+F+ QTK KL Sbjct: 333 GAHLAGFRQALTRVVGKYAESIAKKDALSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKL 392 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 VS + Q V A D H+ +P EA ++ V++ + R RK RE+ R+ + Sbjct: 393 VSSEVQPVVHAAAADIISHWFETHPKEAKIVVSKVLDAASAREAARKARELTRRKGVLDV 452 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC ELFIVEGDSAGG+AKQ R+R QA+LPL+GKILNV A ++ Sbjct: 453 SSLPGKLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDR 512 Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + + +I L+ ALG E+ LRY +++IMTDADVDG+HI +LLLTFF+ Sbjct: 513 MLGSAEIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFF 572 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ +L++ PPL+R +G + Y D+ ++ L Sbjct: 573 RQMPELIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYL 613 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 G+ + I+RFKGLGEM +QL ET +D RTLL+V + +++ D L Sbjct: 772 RLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGD----VEEAGDVFTTL 827 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG + R FI A + ++ Sbjct: 828 MGDIVEPRRDFIVGNALKVANLD 850 >gi|288959569|ref|YP_003449910.1| DNA gyrase subunit B [Azospirillum sp. B510] gi|288911877|dbj|BAI73366.1| DNA gyrase subunit B [Azospirillum sp. B510] Length = 827 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 235/592 (39%), Positives = 353/592 (59%), Gaps = 21/592 (3%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + E + ++ +Y A SI +L GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 AQEALKNDLPQSEPQQADYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AGY + +EV L+ +G +TV DNGRGIP + HP+ S E+++T LHAGGKF+ Sbjct: 62 AIDEALAGYCDKVEVVLNADGSVTVRDNGRGIPTDIHPE-EGVSAAEVVMTQLHAGGKFN 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----- 199 ++Y++SGGLHGVG+SVVNALS+ L + + R +S +F G +PL + Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSETLDLRIWRGGRTWSMRFRHGNAEAPLADVGEAPMVPE 180 Query: 200 --RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGI 257 + GT +TF P + F + FD A L + A+L+ V+ + + Sbjct: 181 KGKPLSGTEVTFMPSAETFTNI-EFDFATLEHRLRELAFLNSGVRLLLTDAR-----GVE 234 Query: 258 PEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG--TVEWAIAWCEEN-PE 314 P+ ++ ++ GGL+ ++ +++ + T K+E+ H G TVE A+ W + Sbjct: 235 PKVQDLHYEGGLEAFVSWLDRSKTALHKPAITLKSERPTEHGGVVTVECALQWNDSYHET 294 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + N I +GGTH +G R ALTR I YA + K +++ DD +LSV Sbjct: 295 TLCFTNNIPQKDGGTHLAGFRAALTRAINNYAAESGIAKKEKVNLSGDDAREGLTCVLSV 354 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + +P+F+ QTK KLVS + + VE + + Y ++P +A ++++ V+E + R Sbjct: 355 KVPDPKFSSQTKDKLVSSEVRPVVEAVVGEALAQYFEEHPADARRVVQKVVEAAAAREAA 414 Query: 433 RKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 RK RE+ RK+++ LPGKLADC + +ELFIVEGDSAGGSAKQ R+R +QA+LPL Sbjct: 415 RKAREMTRKSSLSMSSLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQSQAILPL 474 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIA 552 RGKILNV A +K+ ++ +I L+ ALG ++ E RY K+IIMTDADVDG+HI Sbjct: 475 RGKILNVERARLDKMLSSAEIGTLIAALGTGISDEFNAEKARYHKIIIMTDADVDGSHIR 534 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKILEE 603 +LLLTFF+++M DLIE+ +L++ PPL+RI +G K Y D+ ++ L E Sbjct: 535 TLLLTFFFRQMPDLIERGYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLVE 586 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 G+ + I R+KGLGEM QL ET +D +KR+LL+V +N ++ + LMG Sbjct: 753 GRRGVTIQRYKGLGEMNPDQLWETTLDPSKRSLLQVRVNH----ADQAEEVFSTLMGDVV 808 Query: 668 DERFKFIQERASFIDDVG 685 + R +FIQ+ A + ++ Sbjct: 809 EPRREFIQDNALKVSNLD 826 >gi|331011884|gb|EGH91940.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 805 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T L AGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLRAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +TV R I+ Q + G+P P++ + + GT+I F+P F Sbjct: 121 GVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE-SDTTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTPVNEVFHFNIQRDDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D+E ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDEAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|56459116|ref|YP_154397.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR] gi|56178126|gb|AAV80848.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR] Length = 805 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 +NY +SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I V Sbjct: 3 ENNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEIMV 62 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G ++V D+GRGIPV+ H + S ++I+T LHAGGKFD+++Y++SGGLHGVGI Sbjct: 63 TIHSDGSVSVKDDGRGIPVDIHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGI 121 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ RQ ++ Q + G P S ++ + GT + F P + F D Sbjct: 122 SVVNALSEKLQLTIRRQGQVYEQTYHMGEPDSDVKPVGDT-DTTGTELRFWPSHETFTDT 180 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +++ E F + GG+ ++ +N Sbjct: 181 -EFHYDILAKRLRELSFLNSGVGIRLRDERDDREDL-------FKYEGGIAAFVNYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ I + F T+++ VE ++ W + I + N I +GGTH +G R AL Sbjct: 233 KTPIHEKAFYFTTQRED--GIGVEVSMQWNDSFQENIYCFTNNIPQRDGGTHLAGFRAAL 290 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + E K S DD I+SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNSHMEKEGYNKKSKTSATGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLAD 455 E A+ + YL++NP EA ++ +I+ + R RK R RK A+ LPGKLAD Sbjct: 351 EQAMNEQLADYLLENPGEAKLIINKIIDAARAREAARKAREMTRRKGALDIAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ ++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSVEVGT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 471 LITAMGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + VY D+ + L Sbjct: 531 AQPPLYKVKKGKQEVYIKDDPALIRYLTSLALDN 564 Score = 134 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 H + +E K + + R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 HFVEAVEWLIGESKRGLYVQRYKGLGEMNPDQLWETTMDPDTRRMLQVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 775 DQLFTTLMGDEVEPRRAFIESNALKVANLD 804 >gi|329894833|ref|ZP_08270633.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088] gi|328922727|gb|EGG30061.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088] Length = 805 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 234/568 (41%), Positives = 339/568 (59%), Gaps = 18/568 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 ++ NYD+SSI +L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + IE Sbjct: 2 SNQNYDSSSITVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSTIE 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + + + +TV D+GRGIP E H S E+I+T LHAGGKFD++TY++SGGLHGVG Sbjct: 62 IVVHPDESITVSDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 119 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L +TV RQ +F Q + G+P +PL + +N GT + F P P+ F + Sbjct: 120 VSVVNALSSSLTLTVRRQGKVFEQHYQHGVPQAPLAVVGETQN-TGTTVRFSPSPETFSN 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + A+L+ V + ++ E E + + GGL ++ Sbjct: 179 I-EFHFDILAKRLRELAFLNSGVNIKLTDERS-------GESETYNYDGGLGAFVDYLNR 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVA 337 N++ I+ E VE A+ W + E Y N I +GGTH +G R A Sbjct: 231 NKTPINKLFHFAN-EADEETGVAVEVALQWNDSFQENLLCYTNNIPQKDGGTHLAGFRAA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTRG+ Y E K I DD I+SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRGLNSYIEREGLGKKAKIGTTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE A+ + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQAMSARLNDYLLENPGDAKTIVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E+++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + ++ Sbjct: 410 DCQEKDPALSEIYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEVG 469 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 +V ALGC + + E LRY +IIMTDADVDG+HI +LLLTFF++ M +LIE+ H++ Sbjct: 470 TIVTALGCGIGKEEFDAEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRHMRELIERGHIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601 + PPL++I++G +S Y D++ L Sbjct: 530 IAQPPLYKISKGKQSQYLKDDDALNAFL 557 Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + L I R+KGLGEM QL ET MD R +L Sbjct: 708 IRRGDKSQ---PVREFTEALAWLMTEAAKGYSIQRYKGLGEMNPEQLWETTMDPETRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI++ A + ++ Sbjct: 765 QVTIEDAIM----ADQMFTTLMGDQVEPRREFIEQNALNVANLD 804 >gi|260223058|emb|CBA33241.1| DNA topoisomerase 4 subunit B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 656 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 238/666 (35%), Positives = 339/666 (50%), Gaps = 38/666 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y SSIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AGY I+ Sbjct: 4 KPTPEYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGYGKKIK 60 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEISGGLH 155 V+L +G ++V D+GRGIP HP+ +E++ T LHA K Y SGGLH Sbjct: 61 VTLHADGSVSVEDDGRGIPFGMHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYSFSGGLH 119 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDP 213 GVG+SV NAL L T R+ ++ F G + K K+GT + PD Sbjct: 120 GVGVSVTNALGKRLEATSYREGSVAHLVFEGGDVTEALQVRKAGDGDRKQGTTVRVWPDA 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L + +SKA L V +K E + + + GGLK YL Sbjct: 180 KYFESAV-LPMGELTHLLRSKAVLMPGVSVTLVNEK-------TKESQNWLYKGGLKDYL 231 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGT 329 L +I G + E A + P SY N I T GGT Sbjct: 232 GQTLSADPVIPMFDGEGFADGNNDTFAEGEGATWCVAFTEDGAPVRESYVNLIPTSAGGT 291 Query: 330 HESGLRVALTRGIKKY-AELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 HESGLR L + +K + + + + ++ +D+ A +LS + +P+F GQ K +L Sbjct: 292 HESGLRDGLFQAVKSFIEFHSLLPKGVKLMPEDVFARASYVLSAKVLDPQFQGQIKERLN 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLR 448 S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + + L Sbjct: 352 SRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQKAGQKVEKRKSSGVAVL- 410 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 PGKL DC E+F+VEGDSAGGSAK R++ NQA+LPLRGK+LN +++ Sbjct: 411 -PGKLTDCESRDIAYNEVFLVEGDSAGGSAKMGRDKENQAILPLRGKVLNTWEVDRDRLF 469 Query: 509 NNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 N +I D+ A+G D LRY KV I++DADVDG+HI LLLT F++ Sbjct: 470 ANTEIHDISVAIGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPK 529 Query: 566 LIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRF 617 LIE H+++ PPLFR+ +G K YA DE IL++ +K G +G ISRF Sbjct: 530 LIETGHVYVARPPLFRVDAPARGKKPASKAYALDEGELTAILDKLRKEGVREGAWSISRF 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQE 676 KGLGEM A QL +T ++ + R LL V + + DT+ I KLMG +A R + ++ Sbjct: 590 KGLGEMNAEQLWDTTLNPDTRRLLPVML--GAINFGDTEALITKLMGKGEASSRRELMEL 647 Query: 677 RASFID 682 ++ Sbjct: 648 HGDSVE 653 >gi|192360461|ref|YP_001980528.1| DNA gyrase subunit B [Cellvibrio japonicus Ueda107] gi|190686626|gb|ACE84304.1| DNA gyrase, B subunit [Cellvibrio japonicus Ueda107] Length = 806 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 232/579 (40%), Positives = 340/579 (58%), Gaps = 21/579 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY + Sbjct: 2 SEENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCTEV 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V DNGRGIPV+ H S E+I+T LHAGGKFD++TY++SGGLHGV Sbjct: 62 RVTIHPDETVSVSDNGRGIPVDMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L +T+ R I Q + G+P +PL GT I F+P + F Sbjct: 120 GVSVVNALSEYLKLTIRRAGKIHEQIYCHGVPDAPLTVVGD-SVTTGTEIHFKPSAETFT 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V+ ++ E E + + GGLK +++ Sbjct: 179 NI-EFQYDILAKRLRELSFLNSGVRIVLKDERSGKE-------EIYQYEGGLKAFVEHLN 230 Query: 278 ENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLR 335 +N++ I+ + + G VE A+ W + E Y N I +GGTH +G R Sbjct: 231 KNKTTINKMVHFVASGREDGI---GVEVALQWNDSFQENLFCYTNNIPQRDGGTHLAGFR 287 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD I+SV + +P+F+ QTK KLVS + + Sbjct: 288 AALTRLLNTYIEKEGIGKNAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVK 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + + F YL++NP +A ++ +I+ + R RK R RK A+ LPGK Sbjct: 348 TAVEQEMAEHFSSYLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +EL++VEGDSAGGSAKQ R R QA+LPL+GKILNV A +K+ ++ + Sbjct: 408 LADCQEKDPALSELYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAE 467 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ ALGC + Y E LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H Sbjct: 468 VGTLITALGCGIGKEDYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGH 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 +++ PPL++I +G + Y DE + L + G Sbjct: 528 IYIAQPPLYKIAKGKQEQYLKDEAAMTEFLTQAALDGSS 566 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 LE K + I R+KGLGEM QL ET M+ R +LRV I + Sbjct: 725 LEWLMKESRKGYNIQRYKGLGEMNPEQLWETTMNPETRRMLRVTIQDAIT----ADQIFT 780 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 781 TLMGDQVEPRRDFIETNALAVANLD 805 >gi|114561192|ref|YP_748705.1| DNA gyrase, B subunit [Shewanella frigidimarina NCIMB 400] gi|114332485|gb|ABI69867.1| DNA gyrase subunit B [Shewanella frigidimarina NCIMB 400] Length = 805 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 225/579 (38%), Positives = 348/579 (60%), Gaps = 18/579 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +S+ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ISIHSDGSVSVKDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G+P +P+++ GT + F P F D Sbjct: 121 VSVVNALSQKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDAVK-TGTELRFWPSSDTFTD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDGKD-------EFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ ++F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPINKDVFHFSHERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGA 289 Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNNYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LI++ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIQRGYIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTEYLTTQALDGTNIY 568 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +LRV I + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLRVTIEDAV----AADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIETNALNVANLD 804 >gi|92115637|ref|YP_575366.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14] gi|91798531|gb|ABE60906.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14] Length = 813 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 241/576 (41%), Positives = 342/576 (59%), Gaps = 14/576 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 A +A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 10 ADTEPAAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 69 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A +EV L+ + +TV D+GRGIPV+ H K S E+I+T LHAGGKFD ++Y++SG Sbjct: 70 HATRVEVILNADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSYKVSG 128 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS +L + + R++ +F+ G ++PL+ + KRGT +TF Sbjct: 129 GLHGVGVSVVNALSSKLILRIWRKDKEHLIEFAHGDAVAPLKVVGEANGKRGTEVTFLAS 188 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F + +D A L + A+L+ V S + EK E+ + GG+ + Sbjct: 189 RETFTNV-EYDFATLEHRLRELAFLNSGVNILLSDLRRAVEKR-----EQMMYDGGVVEF 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ N+ + E + + G VE A+ W + E + N I +GGTH Sbjct: 243 VKYLDRNKKAMVPEPIMIRADMNG---LGVEAALWWNDSYHENVLCFTNNIPQRDGGTHL 299 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G R ALTR + YA+ K I++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 300 AGFRGALTRQVNGYADAMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + + ++P EA ++ V+E + R RK RE RK A+ LP Sbjct: 360 VRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A +K+ ++ Sbjct: 420 GKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSS 479 Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFF+++M LIE Sbjct: 480 EQIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPTLIEA 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 HL++ PPL+++T+G Y DE + L E Sbjct: 540 GHLYIAQPPLYKVTRGKSEQYLKDERALEDYLIETG 575 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 + E G+ + + R+KGLGEM QL ET +DA++R+LL+V+I + + D Sbjct: 732 LFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDASERSLLQVKI----KEVDEADDIF 787 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE + +V Sbjct: 788 TKLMGDVVEPRREFIQENSLSA-NVD 812 >gi|239816401|ref|YP_002945311.1| DNA topoisomerase IV subunit B [Variovorax paradoxus S110] gi|239802978|gb|ACS20045.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110] Length = 665 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 352/656 (53%), Gaps = 38/656 (5%) Query: 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108 IR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG+ I+V+L + ++ Sbjct: 23 IRVLKGLEPVKQRPGMY---TRTDNPLHVIQEVLDNAADEALAGHGKKIKVTLHADNSVS 79 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLHGVGISVVNAL 165 V D+GRGIP HP+ +E++ T LHAGGKFD + Y SGGLHGVG+SV NAL Sbjct: 80 VEDDGRGIPFGLHPE-EKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGVGVSVTNAL 138 Query: 166 SDELHVTVARQNTIFSQKFSRGIPLS--PLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 S L VT R+ ++ FS G + + K E K+GT + PD K F A Sbjct: 139 SKRLEVTTHREGSVARLAFSGGDVIEPLQVRKLEAGERKQGTTVRAWPDAKYFET-AALP 197 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 A L + +SKA L V + +K E +++ + GGL YL L +I Sbjct: 198 MAELTHLLRSKAVLMPGVSVTLTVEK-------TKETQQWLYKGGLSDYLMQTLNGDPVI 250 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTDEGGTHESGLRVALT 339 +G +K + E A + P SY N I T GGTHESGLR L Sbjct: 251 PLFEGSGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGTHESGLRDGLF 310 Query: 340 RGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 +K + E + + + ++ +D+ A +LS + +P+F GQ K +L S DA R V + Sbjct: 311 TAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVSS 370 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458 +R + +L Q+ +L E I+ ++ R R ++ E + + + L PGKL DC Sbjct: 371 FVRPALELWLNQHVDYGRRLAELAIKAAQTRQRAGQKVEKRKGSGVAVL--PGKLTDCES 428 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN +++ N +I D+ Sbjct: 429 KDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHDISV 488 Query: 519 ALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 A+G D LRY K+ I++DADVDG+HI LLLT F++ LIE H+++ Sbjct: 489 AVGVDPHGPTDSPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVA 548 Query: 576 SPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGEMLASQ 627 PPLFR+ +G K VYA DE L++ +K G +G ISRFKGLGEM A Q Sbjct: 549 KPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVREGAWSISRFKGLGEMSAEQ 608 Query: 628 LKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFID 682 L ET ++ + R L++V++ TQ I KLMG +A R + ++ RA +D Sbjct: 609 LWETTLNPDTRRLMKVQL--GRFDFSSTQGEITKLMGKGEAAARRELMELRADDVD 662 >gi|148358143|ref|YP_001249350.1| DNA gyrase subunit B [Legionella pneumophila str. Corby] gi|148279916|gb|ABQ54004.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Corby] Length = 805 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 2 SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV D+GRGIPV+ H K KS E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+ V R ++ Q + G+P SP+ + + N GT+I F+P + F Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGE-SNSTGTQIWFKPSAETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ +K+ F++ GG+K +++ Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F+ +EK G +E A+ W + I + N I +GGTH +G R Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+ + + F+ +L++NP A ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 349 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +L+E+ ++ Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E L + G Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS+ E+ +++L K I R+KGLGEM QL ET MD R +L Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A +++ Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 804 >gi|157959834|ref|YP_001499868.1| DNA gyrase subunit B [Shewanella pealeana ATCC 700345] gi|157844834|gb|ABV85333.1| DNA gyrase, B subunit [Shewanella pealeana ATCC 700345] Length = 813 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 223/576 (38%), Positives = 348/576 (60%), Gaps = 18/576 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 + N + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE + Sbjct: 2 NNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AG+ N + +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++ Sbjct: 62 AGHCNDVIITIHADGSVSVRDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS +L +T+ R ++ Q ++ G+P +P+ + GT I F Sbjct: 121 SGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATK-TGTEIRFW 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 P + F D F L K + ++L+ V +++ + E F + GG+ Sbjct: 180 PSTETFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGIS 231 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++ N++ ++ E+F E++ TVE A+ W + I + N I +GGT Sbjct: 232 AFVDYLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGT 289 Query: 330 HESGLRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR + Y E K + DD ++SV + +P+F+ QTK KL Sbjct: 290 HLAGFRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRK 446 VS + + VE + + YL+++P EA ++ +I+ + R RK R RK A+ Sbjct: 350 VSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDL 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K Sbjct: 410 GGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 469 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q++ L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M + Sbjct: 470 MLSSQEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LIE+ ++++ PPL+++ +G + Y D+ + L Sbjct: 530 LIERGYVYIAQPPLYKVKKGKQEQYLKDDPALTEYL 565 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 730 EALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG----ADQL 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 786 FTCLMGDQVEPRRDFIEANALNVANLD 812 >gi|54292968|ref|YP_125383.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Lens] gi|53752800|emb|CAH14234.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Lens] Length = 805 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 2 SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV D+GRGIPV+ H K KS E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+ V R ++ Q + G+P SP+ + + N GT+I F+P + F Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ +K+ F++ GG+K +++ Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F+ +EK G +E A+ W + I + N I +GGTH +G R Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+ + + F+ +L++NP A ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 349 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +L+E+ ++ Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E L + G Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS+ E+ +++L K I R+KGLGEM QL ET MD R +L Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A +++ Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIESNALDAENID 804 >gi|328952219|ref|YP_004369553.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109] gi|328452543|gb|AEB08372.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109] Length = 803 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 231/572 (40%), Positives = 344/572 (60%), Gaps = 18/572 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y A +IR+L GLE VR RP MYIG T + LHHL EV+DN++DE +AGY N I+V++ Sbjct: 14 DYGADNIRVLGGLEAVRQRPSMYIGNTGPEGLHHLVYEVVDNSIDEALAGYCNQIQVTIH 73 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVV 162 + +TV DNGRGIPV+ H K N +E+++T LHAGGKFD+ TY++SGGLHGVG+SVV Sbjct: 74 SDNSVTVEDNGRGIPVDLH-KEENLPAVEVVMTKLHAGGKFDHKTYQVSGGLHGVGVSVV 132 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGF 222 NALS+ L V + R ++ Q++ +G + L + + RGT+I+F+PD +IF + F Sbjct: 133 NALSEYLEVEIRRDGRVYHQRYEQGNTSTQLAITGETKR-RGTKISFKPDAEIFSE-TTF 190 Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282 L + ++L+ V+ ++ + FY+ GG++ ++ N++L Sbjct: 191 SYDILATRLRELSFLNRGVRIMLEDERSGKKND-------FYYEGGIQEFVIFLNRNKTL 243 Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRG 341 + + +E A + + +I +Y N I T EGGTH SG + LTR Sbjct: 244 MHEPPIYLNGSR---AEVIIEIAFQYNDTYNEQIFTYANNINTREGGTHLSGFKAGLTRC 300 Query: 342 IKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I +Y + + DD+ G++S+ + +P+F GQTKTKL + D + VEN Sbjct: 301 INQYMATADLPKNLKEHLTGDDVREGLTGVISIKLPDPQFEGQTKTKLGNSDIKGLVENL 360 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + + YL +NP A ++L VIE + R R+ +E +K + +L LPGKLADC + Sbjct: 361 VYENLLTYLGENPTIAKQILAKVIEAARAREAARRAKELARKKGGLSELALPGKLADCQE 420 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 EL++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q+I L+ Sbjct: 421 RDPSRRELYLVEGDSAGGSAKQARDRRFQAILPLKGKILNVEKARYDKMLQSQEIRTLIT 480 Query: 519 ALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + ++ E LRY ++IIMTDADVDG+HI +LLLTFFY++M +LI + +L++ P Sbjct: 481 ALGAGIGKEEQDLEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMAELISRGYLYIAQP 540 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609 PL+R+T+G + +Y DE Q L K Sbjct: 541 PLYRLTRGNEKIYLKDEGPFQDYLLARGLDKK 572 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%) Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PP +R+ +G K+ + +++++ G+ + + RFKGLGEM QL ET MD Sbjct: 701 QPP-YRLQEGAKT---WEIATLEELVQVVLNEGQKGLSVQRFKGLGEMNPEQLWETTMDP 756 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + + LMG K + R FIQ A + + Sbjct: 757 ETRTLLQVNIEDAV----AADEIFTILMGDKVEPRRDFIQNNALELSQLD 802 >gi|85857848|ref|YP_460050.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB] gi|85720939|gb|ABC75882.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB] Length = 800 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 239/583 (40%), Positives = 345/583 (59%), Gaps = 27/583 (4%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +DNY A SI+ILEGLE VR+RP MYIG ++ LHHL EV+DN++DE AGY + I V Sbjct: 2 TDNYSADSIKILEGLEAVRVRPAMYIGSIGKEGLHHLVYEVVDNSIDEASAGYCDKITVK 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + + V DNGRGIPV+ H S E+++T LHAGGKF N +Y+ISGGLHGVG+S Sbjct: 62 IRVDNSIMVEDNGRGIPVDMHE--TGVSAAEVVMTKLHAGGKFSNDSYKISGGLHGVGVS 119 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS + + V R ++SQ + RG+P +PL + RGT+I F+PD IF + Sbjct: 120 VVNALSSSMELNVRRDGKVYSQSYVRGVPTAPLAVTGQTSG-RGTKIYFKPDDTIFEE-L 177 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F+ L + A+L+ V+ D+ K EF++ GG+ ++++ N+ Sbjct: 178 EFNFDILANRLRELAFLNSGVRIALIDDRS-------DRKSEFFYEGGIISFVEYINRNK 230 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 ++ + E++ + TVE A+ + + I S+ N+I T EGGTH SG R ALT Sbjct: 231 KVLHKDPIYVSGEREDS---TVEVALQYNDTYTENIFSFANSINTTEGGTHLSGFRSALT 287 Query: 340 RGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R YA + +DL ++SV ++ P+F GQTKTKL + + + VE Sbjct: 288 RVFNNYAVNNGLLKNGKESLRGEDLREGLACVISVKVQNPQFEGQTKTKLGNSEVRGLVE 347 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + YL +NP A +LL +E S R R+ RE RK+A+ LPGKLADC Sbjct: 348 GIVYEKIGSYLEENPSVAKQLLNKCLEASRAREAARRARELTRRKSALEVGALPGKLADC 407 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL++VEGDSAGGSAKQ R+R NQA+LPLRGK+LNV A +K+ N++I + Sbjct: 408 QERDPARSELYLVEGDSAGGSAKQGRDRRNQAILPLRGKVLNVEKARFDKMLQNEEIKTM 467 Query: 517 VQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + +RY KVIIMTDADVDG+HI +LLLTFF+++M +L+E+ +L++ Sbjct: 468 ITALGTGIGQEDYDVSRIRYHKVIIMTDADVDGSHIRTLLLTFFFRQMRELVEKGYLYIA 527 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 PPLF+IT+ VY +EE + + + R K Sbjct: 528 QPPLFKITEKKNEVYIRNEEEMNNFILQNG--------VKRIK 562 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 GK + + R+KGLGEM QL ET M+ KRTLL+V ++ + + LMG + Sbjct: 726 GKKGLSVQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVDDAV----QADEIFTTLMGDQV 781 Query: 668 DERFKFIQERASFIDDVG 685 + R +FI + A ++ ++ Sbjct: 782 EPRREFIYQNALYVSNLD 799 >gi|54295987|ref|YP_122356.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Paris] gi|53749772|emb|CAH11152.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Paris] Length = 805 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 229/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 2 SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV D+GRGIPV+ H K KS E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+ V R ++ Q + G+P SP+ + + N GT+I F+P + F Sbjct: 121 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ +K+ F++ GG+K +++ Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F+ +EK G +E A+ W + I + N I +GGTH +G R Sbjct: 232 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+ + + F+ +L++NP + ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 349 AVESCVAEKFNDFLLENPTASKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +L+E+ ++ Sbjct: 469 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E L + G Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 564 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS+ E+ +++L K I R+KGLGEM QL ET MD R +L Sbjct: 708 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A +++ Sbjct: 765 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 804 >gi|332041519|gb|EGI77880.1| DNA topoisomerase IV subunit B [Hylemonella gracilis ATCC 19624] Length = 660 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 242/667 (36%), Positives = 350/667 (52%), Gaps = 32/667 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG+ Sbjct: 2 ATKPTPEYSEGSIRVLKGLEPVQQRPGMY---TRTDNPLHIIQEVLDNAADEALAGHGKR 58 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGG 153 I V L +G ++V D+GRGIP HP+ +EI+ T LHAGGKFD + Y SGG Sbjct: 59 IAVILHADGSVSVEDDGRGIPHGLHPE-EKVPVIEIVYTRLHAGGKFDKGSGGAYSFSGG 117 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRG--IPLSPLEKKEKVRNKRGTRITFRP 211 LHGVG+SV NAL+ L V R+ + + F+ G ++ K GT + P Sbjct: 118 LHGVGVSVTNALAKRLEVMSYREGQVATMAFAGGAVEEKLRARAQKSEDRKSGTTVRVWP 177 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 D K F A L + +SKA L V + +K K + + + + GGL+ Sbjct: 178 DAKYFES-AALPMGELTHLLRSKAVLMPGVTVTLTVEKGKDGKAS--DTQTWLYKGGLRD 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTH--RGTVEWAIAWCEEN-PEITSYCNTILTDEGG 328 YL L +I G + WA+A+ E+ P SY N I T GG Sbjct: 235 YLMQTLTADPVIPLFEGEGYAVDNDSFAEGEGAAWAVAFTEDGAPVRESYVNLIPTSAGG 294 Query: 329 THESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 TH+SGLR L +K + + + + + ++ +D+ A +LS + +P+F GQ K +L Sbjct: 295 THDSGLRDGLFNAVKSFIDLHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERL 354 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 S DA R V + +R + +L Q+ KL E I ++ R R ++ E + + + L Sbjct: 355 NSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIRAAQTRQRAGQKVEKKKGSGVAVL 414 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 PGKL DC ELF+VEGDSAGGSAK R++ +QA+LPLRGK+LN +++ Sbjct: 415 --PGKLTDCESKDLAHNELFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRL 472 Query: 508 RNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I D+ A+G E D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 473 FANTEIHDISVAIGVDPHGPNDEPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 532 Query: 565 DLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 LIE H+++ PPLFR+ +G K YA DE IL++ K G K + +ISR Sbjct: 533 KLIETGHVYVARPPLFRVDVPARGKKPASKAYALDEGELTAILDKTAKEGVAKERCQISR 592 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM A QL ET ++ + R LL+V++ + T+ I KLMG +A R + ++ Sbjct: 593 FKGLGEMNAEQLWETTLNPDTRRLLQVQL--GGYDTRQTEGEITKLMGKGEAAARRELME 650 Query: 676 ERASFID 682 ++ Sbjct: 651 LHGDSVE 657 >gi|332171719|gb|AEE20973.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 806 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 220/574 (38%), Positives = 343/574 (59%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 4 ENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTNINV 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 64 KIHTDGSVSVKDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS L + + R + Q++ G+P PLE + + GT I F P + F Sbjct: 123 SVVNALSRRLQILIRRAGKVHEQEYQHGVPQKPLEVIGE-SDTSGTSIRFWPSEETFTGI 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +++ +++ F + GG++ +++ +N Sbjct: 182 -EFHYDILAKRLRELSFLNSGVSIILEDERD-------GKRDHFMYEGGIQAFVEYLNQN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + ++F +E+ +VE A+ W + + + N I +GG+H +G R AL Sbjct: 234 KTPVHQQVFHFNSERDD--GISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGAL 291 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + E K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 292 TRTLNAFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E + + + +L++NP + ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 352 ETVMGEKLNEFLLENPSASKIIINKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 CQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 471 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 472 LITALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL++ +G + Y D++ K L Sbjct: 532 AQPPLYKTKKGKQEQYLKDDDSLTKYLTAIALDN 565 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + K L K G+ I R+KGLGEM QL ET MD R +L Sbjct: 709 VKRNDKVKPIFSFAEGLDWLMAESKKGQY---IQRYKGLGEMNPEQLWETTMDPGSRRML 765 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V++ + LMG + R FI++ A + ++ Sbjct: 766 QVKVEDAI----AADQLFTTLMGDHVEPRRAFIEDNALRVANLD 805 >gi|167621945|ref|YP_001672239.1| DNA gyrase subunit B [Shewanella halifaxensis HAW-EB4] gi|167351967|gb|ABZ74580.1| DNA gyrase, B subunit [Shewanella halifaxensis HAW-EB4] Length = 813 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 223/572 (38%), Positives = 347/572 (60%), Gaps = 18/572 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 N + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ Sbjct: 6 ENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 N + +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGL Sbjct: 66 NDVIITIHADGSVSVRDDGRGIPVSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGL 124 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS +L +T+ R ++ Q ++ G+P +P+ + GT I F P + Sbjct: 125 HGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATK-TGTEIRFWPSTE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F D F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 184 TFTDVL-FHFDILAKRVRELSFLNSGVGIRLVDERDNRD-------EFFKYEGGISAFVD 235 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 N++ ++ E+F E++ TVE A+ W + I + N I +GGTH +G Sbjct: 236 YLNVNKTPVNKEVFHFCQERED--GITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAG 293 Query: 334 LRVALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + Y E K + DD ++SV + +P+F+ QTK KLVS + Sbjct: 294 FRGALTRNLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSE 353 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLP 450 + VE + + YL+++P EA ++ +I+ + R RK R RK A+ LP Sbjct: 354 VKSAVEQTMGEQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLP 413 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 414 GKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 473 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALGC R +Y + RY ++IMTDADVDG+HI +LLLTFF+++M +LIE+ Sbjct: 474 QEVATLITALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 533 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL+++ +G + Y D+ + L Sbjct: 534 GYVYIAQPPLYKVKKGKQEQYLKDDPALTEYL 565 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I + Sbjct: 730 EALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG----ADQL 785 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 786 FTCLMGDQVEPRRDFIEANALNVANLD 812 >gi|170743430|ref|YP_001772085.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46] gi|168197704|gb|ACA19651.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46] Length = 808 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 237/582 (40%), Positives = 347/582 (59%), Gaps = 16/582 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 A D Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 2 AEPARDLTPDTYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A L+ V+L+ +G TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y++S Sbjct: 62 GHATLVTVTLNPDGSCTVSDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L + + R + +F G ++PL ++RGT +TF P Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGQEHAMEFRHGDAVAPLAVVGPAGDRRGTEVTFLP 180 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 + F FD A L K + A+L+ V+ + + K EE + GG++ Sbjct: 181 STETFS-MVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKR-----EELVYEGGVEA 234 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTH 330 +++ ++ + ++ + E+ G +VE A+ W + + + N I +GGTH Sbjct: 235 FVRYLDRTKTPLVAKPVVVRAERDGI---SVEVALWWNDSYHETVLPFTNNIPQRDGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR I YAE + K +++ DD I+SV + +P+F+ QTK KLV Sbjct: 292 MAGFRAALTRQITGYAESSGIAKKEKVTLTGDDCREGLTAIISVKVPDPKFSSQTKDKLV 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 S + + VE L + ++L +NP EA ++ V E + R RK RE RK A+ Sbjct: 352 SSEVRPVVEAVLGEGLSNWLEENPGEARTIVGKVAEAAAAREAARKARELTRRKGALDIA 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + E+ +VEGDSAGGSAKQ R+R+ QAVLPLRGKILNV A +K+ Sbjct: 412 SLPGKLADCQERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKM 471 Query: 508 RNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q+I L+ ALG R ++ + LRY ++IIMTDADVDG+HI +LLLTFF+++M +L Sbjct: 472 LSSQEIGTLITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEL 531 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 IE+ HL++ PPL++ ++G +Y DE + L + G Sbjct: 532 IERGHLYIAQPPLYKASKGRSHLYLKDERALEDYLIDGGVEG 573 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ +++ R+KGLGEM A QL ET +D + R+LL+V++ D D Sbjct: 725 ALFETTMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKV----KDTTDADDL 780 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE A + ++ Sbjct: 781 FVKLMGDVVEPRREFIQENALNVANLD 807 >gi|325291465|ref|YP_004277329.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] gi|325059318|gb|ADY63009.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] Length = 811 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 235/575 (40%), Positives = 342/575 (59%), Gaps = 16/575 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 + + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 4 TSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+L+ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y++S Sbjct: 64 GHADLVTVTLNADGSVTVTDNGRGIPTDIHS-SEGVSAAEVIMTQLHAGGKFDQNSYKVS 122 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L + + R + F+ G+ +PL + + GT +TF Sbjct: 123 GGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFLA 182 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 P F +D L + A+L+ V+ + + K +EE + GGL+ Sbjct: 183 SPDTFT-MTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIK-----QEELLYDGGLEA 236 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330 +++ + + + EK G TVE A+ W + E + N I +GGTH Sbjct: 237 FVRYLDRAKKPLVDKPVAIHGEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGGTH 293 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR + YAE + + + +D ILSV + +P+F+ QTK KLV Sbjct: 294 MAGFRAALTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLV 353 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 S + + VE+ + + +L ++P +A L+ V+E + R RK RE RK A+ Sbjct: 354 SSEVRPVVESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIA 413 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKM 473 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 IE+ HL++ PPL+++T+G Y DE+ ++ L Sbjct: 534 IERGHLYIAQPPLYKVTRGKSVQYLKDEKALEEYL 568 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 + +L+ G+ + + R+KGLGEM A QL ET +DAN R+LL+V++N D Sbjct: 727 RALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDAT----DADG 782 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQE A + ++ Sbjct: 783 LFSRLMGDEVEPRRDFIQENALSVANLD 810 >gi|307825353|ref|ZP_07655572.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96] gi|307733528|gb|EFO04386.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96] Length = 821 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 223/581 (38%), Positives = 347/581 (59%), Gaps = 19/581 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 S A +A+ YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE Sbjct: 11 TSSQTAAITTAAPEYDSTNIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDE 70 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AGY + V + NG ++V D+GRGIPV+ H K S E+I+T LHAGGKFD++ Y Sbjct: 71 ALAGYCKEVRVIIHSNGSVSVSDDGRGIPVDIH-KEEGVSAAEVIMTVLHAGGKFDDNAY 129 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG+SVVNALS+EL++ V + ++ Q++ G P++PL GT I Sbjct: 130 KVSGGLHGVGVSVVNALSEELNLEVRKNGQLYKQQYRMGNPVAPLAAVGPAEG-SGTLIN 188 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F+P + F D F L K + ++L+ V+ ++ ++ F F GG Sbjct: 189 FKPSTETFTDV-EFHYDILAKRLRELSFLNSGVRISLEDERS-------DRQDVFEFEGG 240 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEG 327 + ++ +N++ + E+F EK+G VE A+ W + + Y N I +G Sbjct: 241 IGAFVVHLNKNKTPLFPEVFHFVAEKEGV---VVEIAMQWNDSYQENVFCYTNNIPQRDG 297 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 G+H +G R ALTR I +Y E + K + DD +LSV + +P+F+ QTK Sbjct: 298 GSHLAGFRGALTRTINQYIESSGLAKKEKVQTTGDDAREGLTAVLSVKVPDPKFSSQTKD 357 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAI 444 KLVS + + VE+ + + +L++ P A ++ ++E + R RK R+ RKT + Sbjct: 358 KLVSSEIKPIVESTMNEKLQEFLLEKPQIAKAIVGKIVEAARAREAARKARDLTRRKTTL 417 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC + +ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A Sbjct: 418 DIAGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARF 477 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +K+ +++++ L+ ALGC LRY ++IIMTDADVDG+HI +LLLTFFY+++ Sbjct: 478 DKMISSEEVGTLITALGCGIGKDEYNLAKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQL 537 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +++E+ ++++ PPL+++ +G + Y D+ + L + Sbjct: 538 PEIVEKGYIYIAQPPLYKVKKGKQEHYVKDDAQLNEYLIQL 578 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ E K K I R+KGLGEM QL ET +D+N R LL+V I + Sbjct: 736 FKQAFEWMMKEIKKGQHIQRYKGLGEMNPEQLWETTLDSNNRRLLQVRIEDVI----AAD 791 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI + A + ++ Sbjct: 792 EIFTTLMGDVVEPRRDFIVKNALDVTNLD 820 >gi|83652312|gb|ABC36375.1| DNA gyrase, B subunit [Burkholderia thailandensis E264] Length = 867 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 235/614 (38%), Positives = 344/614 (56%), Gaps = 33/614 (5%) Query: 16 SQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKAL 74 ++ ++ + N ++Y ASSI+ILEGLE VR RPGMYIG T D L Sbjct: 30 KHPAATRVAQQNRKTPMTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGL 89 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLE 131 HHL EV+DN++DE +AGY N I V++ + ++V DNGRGIP + P +S E Sbjct: 90 HHLVFEVLDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAE 149 Query: 132 IILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP-- 189 I++T LHAGGKFD ++Y++SGGLHGVG+S VNALS L +TV R +F RGI Sbjct: 150 IVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQN 209 Query: 190 ----------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 +SP++ N RGT + F D IFG + L K + ++L+ Sbjct: 210 RVLEERDGEQVSPMQVIGDTEN-RGTEVHFMADSTIFGTV-EYHYDILAKRIRELSFLNN 267 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ + + E F F GG+K +++ + +S++ IF EK G Sbjct: 268 GVRIRLTDQRSGKEDD-------FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV-- 318 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 VE A+ W + + + N I +GGTH +GLR A+TR I KY + K + Sbjct: 319 -GVEVAMQWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVE 377 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD+ +LSV + EP+F+ QTK KLVS + + VE + + +L++ P +A Sbjct: 378 TSGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAK 437 Query: 417 KLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 + ++E + R RK RE+ R+ + + LPGKLADC + +E++IVEGDSAG Sbjct: 438 IICGKIVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAG 497 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLR 534 GSAKQ R+R QA+LPLRGK+LNV A +K+ +++QI+ LV ALGC + LR Sbjct: 498 GSAKQGRDRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLR 557 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y ++IIMTDADVDGAHI +LLLTFFY++M ++IE+ ++++ PPL+++ G Y D+ Sbjct: 558 YHRIIIMTDADVDGAHIRTLLLTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDD 617 Query: 595 EHKQKILEEFKKHG 608 + G Sbjct: 618 TELNAHMLRLALQG 631 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 778 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 834 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 835 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 866 >gi|93004837|ref|YP_579274.1| DNA gyrase, B subunit [Psychrobacter cryohalolentis K5] gi|92392515|gb|ABE73790.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5] Length = 871 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 225/607 (37%), Positives = 355/607 (58%), Gaps = 29/607 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D LP Q + + A A + +Y + IR+L GLE VR+ Sbjct: 1 MSDS-------LPTDHQQLTSDSAVET---IAAAVAPEVLPSDYSSKDIRVLRGLEAVRV 50 Query: 61 RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I++ + + ++V+DNGRG+PV+ Sbjct: 51 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 110 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HP+ S ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+ Sbjct: 111 IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 169 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + Q ++ G+P +++ E ++ GT+I F P +F F+ L K + ++L+ Sbjct: 170 YHQTYTDGVPDGDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNS 227 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ + ++ I ++ EF GGL ++ + I+ + G Sbjct: 228 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGI-- 278 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ W + ++ + N I +GGTH SG R ALTR + Y + K ++ Sbjct: 279 -SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVA 337 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD I+SV + +P+F+ QTK KLVS + + VE+A+ D F+ YL +NP Sbjct: 338 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGK 397 Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 + +I+ + R RK RKT + LPGKLADC + +EL+IVEGDSAG Sbjct: 398 LIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 457 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534 GSAKQ R+R QA+LPL+GKILNV A +K+ ++Q++ +L+ ALGC +Y + +R Sbjct: 458 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVR 517 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K+IIMTDADVDG+HI +LLLTFF+++ +LIE+ ++++ PPL+++ +G + +Y D+ Sbjct: 518 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 577 Query: 595 EHKQKIL 601 E + L Sbjct: 578 EALKAYL 584 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + I R+KGLGEM A QL +T MD R +LRV I + Sbjct: 784 RDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAI----A 839 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A + ++ Sbjct: 840 ADHMFTCLMGDHVEPRRIFIEENALTVSNLD 870 >gi|152998559|ref|YP_001364240.1| DNA gyrase subunit B [Shewanella baltica OS185] gi|160873130|ref|YP_001552446.1| DNA gyrase subunit B [Shewanella baltica OS195] gi|217971220|ref|YP_002355971.1| DNA gyrase subunit B [Shewanella baltica OS223] gi|151363177|gb|ABS06177.1| DNA gyrase, B subunit [Shewanella baltica OS185] gi|160858652|gb|ABX47186.1| DNA gyrase, B subunit [Shewanella baltica OS195] gi|217496355|gb|ACK44548.1| DNA gyrase, B subunit [Shewanella baltica OS223] gi|315265355|gb|ADT92208.1| DNA gyrase, B subunit [Shewanella baltica OS678] Length = 805 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G+P +P+++ GT I F P F D Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH G R A Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804 >gi|253995377|ref|YP_003047441.1| DNA gyrase subunit B [Methylotenera mobilis JLW8] gi|253982056|gb|ACT46914.1| DNA gyrase, B subunit [Methylotenera mobilis JLW8] Length = 805 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 229/576 (39%), Positives = 342/576 (59%), Gaps = 21/576 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 N + S +YD+SSI+ILEGL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ Sbjct: 2 SENNAISPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 + I+V + + ++V DNGRGIP + K +S EI++T LHAGGKFD ++Y++ Sbjct: 62 CDDIKVIIHPDNSVSVSDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKV 121 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALSD L + + R + +F RG ++PL + V +K+GT + F Sbjct: 122 SGGLHGVGVSVVNALSDWLKLKIYRNGKVHQMEFRRGEAVAPLAETG-VTDKKGTEVHFL 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 + F + L K + ++L+ VK + + E F + GG+K Sbjct: 181 ASVETFVLV-EYHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAYSGGIK 232 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ +++++ + F EK G T+E A+ W + + + N I +GGT Sbjct: 233 GFVEYMNRSKTVLHPKTFYASGEKDG---MTIEVAMQWNDSYSETVQCFTNNIPQRDGGT 289 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +GLR A+TR + +Y E ++ K + DD+ +LSV + +P+F+ QTK KL Sbjct: 290 HLTGLRTAMTRTLNQYIEQSELAKKAKVETTGDDMREGITCVLSVKVPDPKFSSQTKDKL 349 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 VS + Q V + +L +NP +A + V+E + R RK RE+ R+ + Sbjct: 350 VSSEVQPVVSEIVAAKLAEFLQENPADAKIICGKVVEAARAREAARKAREITRRKGVMDT 409 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 + LPGKLADC + E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K Sbjct: 410 MGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDK 469 Query: 507 IRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q+I L+ ALG E LRY ++IIMTDADVDGAHI +LLLTFFY++M + Sbjct: 470 LLSSQEIATLITALGTSIGKADFSAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 L+E+ H+++ PPL+++ QG Y DE+ L Sbjct: 530 LVERGHIYIAQPPLYKVKQGRDERYLKDEQELDIYL 565 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + K ++ L+ + K + I R+KGLGEM QL ET MD R LL Sbjct: 708 VKRNDKEQ---TISTFKQALDWLQGEAKNTLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V+I+ + + LMG + R FI+ A + ++ Sbjct: 765 KVQIDDAI----AADEIFTTLMGDNVEPRRAFIESNALGVGNLD 804 >gi|52840260|ref|YP_094059.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627371|gb|AAU26112.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 806 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 357/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+++I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 3 SVDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEI 62 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + +TV D+GRGIPV+ H K KS E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 63 FVTIHSDESITVKDDGRGIPVDIH-KEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 121 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+ V R ++ Q + G+P SP+ + + N GT+I F+P + F Sbjct: 122 GVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAETFS 180 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ +K+ F++ GG+K +++ Sbjct: 181 NI-EFHYDILAKRLRELSYLNSGVCIHLFDER-------TQKKDTFHYEGGIKAFVEHLN 232 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + +F+ +EK G +E A+ W + I + N I +GGTH +G R Sbjct: 233 KNKTPVHPVVFSMTSEKDGI---VIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRA 289 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 290 ALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKP 349 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+ + + F+ +L++NP A ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 350 AVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 409 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 ADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEV 469 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +L+E+ ++ Sbjct: 470 ATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E L + G Sbjct: 530 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALDG 565 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS+ E+ +++L K I R+KGLGEM QL ET MD R +L Sbjct: 709 IQRGDKSL---PVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRML 765 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A +++ Sbjct: 766 QVSIEDAV----AADEIFTTLMGDNVEPRRDFIETNALDAENID 805 >gi|120552949|ref|YP_957300.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8] gi|120322798|gb|ABM17113.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8] Length = 804 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 229/575 (39%), Positives = 346/575 (60%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + NY++SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AGY + I Sbjct: 2 SESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIG 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + + + +TV DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 IIIHPDESITVKDNGRGIPVDLHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L +T+ R ++ Q ++ G+P +PL + + + GT++ F P P+ F Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQSYTHGVPNAPLGEVGET-DASGTKVHFIPSPETFT- 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + A+L+ V+ + ++ E E F + GGL+ +++ Sbjct: 179 HIQFHYDILAKRLRELAFLNSGVRIRLTDERSGKE-------EIFEYEGGLRAFVEHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + + G VE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTAINRVFHFNREREDGI---AVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRSLNNYIDHEGLGKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE L F YL + P EA +++ +IE + R RK RK A+ LPGKLA Sbjct: 349 VEQELYQSFAEYLQEQPNEAKQIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +ELFIVEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ + LRY +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F Sbjct: 469 TLITALGCGIGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVF 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE+ K+ L + G Sbjct: 529 IAMPPLYKVKRGKQEQYLKDEKAKEAYLTQSALEG 563 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + + LE K + + I R+KGLGEM QL ET MD R ++ Sbjct: 707 IQRGERKQSVLS---FEGALEWLMKEAQRGLNIQRYKGLGEMNPDQLWETTMDPETRRMM 763 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R FIQ A + ++ Sbjct: 764 KVTIEDAI----AADQIFTTLMGDDVEPRRDFIQSNALEVTNLD 803 >gi|304412708|ref|ZP_07394311.1| DNA gyrase, B subunit [Shewanella baltica OS183] gi|307305827|ref|ZP_07585573.1| DNA gyrase, B subunit [Shewanella baltica BA175] gi|304348918|gb|EFM13333.1| DNA gyrase, B subunit [Shewanella baltica OS183] gi|306911320|gb|EFN41746.1| DNA gyrase, B subunit [Shewanella baltica BA175] Length = 805 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G+P +P+++ GT I F P F D Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLVDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH G R A Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804 >gi|326793326|ref|YP_004311146.1| DNA gyrase B subunit [Marinomonas mediterranea MMB-1] gi|326544090|gb|ADZ89310.1| DNA gyrase, B subunit [Marinomonas mediterranea MMB-1] Length = 807 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 223/575 (38%), Positives = 342/575 (59%), Gaps = 16/575 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHPDESVSVSDNGRGIPVDMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L +T+ + I+ Q + G+P +PL + GT + F+P F + Sbjct: 121 VSVVNALSESLTLTIRKDGKIYEQNYVHGVPQAPLAIIGDT-DGAGTSVHFKPSADTFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++ E E F + GGL+++++ Sbjct: 180 IL-FIYDILAKRLRELSFLNSGVAIHLKDERSGKE-------EFFNYEGGLRSFVEHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ VE A+ W E I Y N I +GGTH +G R A Sbjct: 232 NKTPINDIFHFICQRDDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGA 291 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + + E K+ ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 292 LTRTLNNFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE + F YL++ P EA ++ +I+ + R R+ RK A+ LPGKLA Sbjct: 352 VEQEMAKRFAEYLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 412 DCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 471 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ + LRY ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H+F Sbjct: 472 TLITALGCGIGRDEFNPDKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIF 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++T+ +Y DE ++ L E G Sbjct: 532 IAQPPLYKVTRRKNELYIKDEHALEQHLIEVALDG 566 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ D + + L K K +++ R+KGLGEM QL ET MD + R +L Sbjct: 710 IQRGERTQIVTDIDVMKTWL---MKEAKRGMDVQRYKGLGEMNPDQLWETTMDPDSRRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I+ + LMG + + R FIQ+ A + ++ Sbjct: 767 RVTIDDAV----AADQMFTTLMGDEVEPRRNFIQDNALSVANLD 806 >gi|146328853|ref|YP_001209522.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A] gi|146232323|gb|ABQ13301.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A] Length = 800 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 233/566 (41%), Positives = 338/566 (59%), Gaps = 19/566 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +YD+S IR+L+GLE VR+RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVI 61 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + N +TV DNGRGIPV+ H K +S E+I+T LHAGGKFD S+Y++SGGLHGVG+S Sbjct: 62 IHQNESITVRDNGRGIPVDIH-KEEGRSAAEVIMTILHAGGKFDASSYKVSGGLHGVGVS 120 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS++L +T+ R I Q++ G P +PL GT I F + F + Sbjct: 121 VVNALSEKLELTIRRDGHIHYQQYRHGEPQAPLAIIGDTEE-TGTEIRFLASRETFHNV- 178 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L K Q ++L+ V+ + +++ + E F + GG+ + + N+ Sbjct: 179 EFDYDTLAKRLQELSFLNSGVRIVLTDERK-------DKTEVFQYEGGIIAFTRYLNRNK 231 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I IF EK + VE ++ W + + + N I +GGTH +G R A+T Sbjct: 232 TPIHDTIFHCAIEKDASI---VEISLQWNDSYQENVYYFTNNIPQRDGGTHMAGFRSAMT 288 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + Y E K IS DD ++S+ I +P+F+ QTK KLVS + + VE Sbjct: 289 RTLNNYMEAEGIAKKAKISTSGDDAREGLTAVVSIKIPDPKFSSQTKDKLVSSEVKGLVE 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456 L + +L ++P EA ++ +++ + R RK R RK A+ LPGKLADC Sbjct: 349 GVLSEKLQEFLYEHPNEAKIIVNKIVDAARAREAARKAREMTRRKDALDITGLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +ELF+VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + +I L Sbjct: 409 QEKDPALSELFLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLASAEIATL 468 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++ Sbjct: 469 ITALGTGIGKEDFDPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIA 528 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G +S Y D+ ++L Sbjct: 529 QPPLYKVKKGKQSQYLKDDHELNELL 554 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%) Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINK 647 Y D +++ GK EI R+KGLGEM QL ET +D + R +L+V++ Sbjct: 712 VHYFSD------VMQALFAEGKKSYEIQRYKGLGEMNPEQLWETTLDPSVRRMLQVKVQD 765 Query: 648 DLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ + LMG + + R FI+E A ++ Sbjct: 766 AMH----ADEVFTTLMGEEVEPRRAFIEENAIRAGNID 799 >gi|91791373|ref|YP_561024.1| DNA gyrase, B subunit [Shewanella denitrificans OS217] gi|91713375|gb|ABE53301.1| DNA gyrase subunit B [Shewanella denitrificans OS217] Length = 805 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 226/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHTDGSVSVQDDGRGIPVAIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R I+ Q ++ G+P +P+ GT I F P + F + Sbjct: 121 VSVVNALSHKLQLTIRRGGKIYEQFYTMGVPDAPIAAIGDAIK-TGTEIRFWPSGETFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 L-EFHFDILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVTYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH +G R A Sbjct: 232 NKTPVNKDVFHFAHERED--GITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRGA 289 Query: 338 LTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNTYMEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEQLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y E RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYDPEKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTEYLTTQALDGTRIYPTQ 571 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K E + L+ K + I R+KGLGEM QL ET MD R +L Sbjct: 708 VQRGEKVKEV---ETFLEALDWMISEAKRGLYIQRYKGLGEMNPEQLWETTMDPETRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I + LMG + + R +FI+ A + ++ Sbjct: 765 RVTIEDAVG----ADQLFTTLMGDQVEPRREFIEANALNVANLD 804 >gi|28493461|ref|NP_787622.1| DNA topoisomerase IV subunit B [Tropheryma whipplei str. Twist] gi|28476502|gb|AAO44591.1| DNA gyrase subunit B-like protein [Tropheryma whipplei str. Twist] Length = 662 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 234/674 (34%), Positives = 336/674 (49%), Gaps = 39/674 (5%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 S++ +Y+A I +LEGL VR RPGMYIG TD L H E+IDN++DEV+AG+ N++ Sbjct: 2 SSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVVN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++L G+ +V D GRGIPV+ K + +E++ T LHAGGKF Y SGGLHGVG Sbjct: 62 ITLHGDNSFSVQDFGRGIPVDIESK-TGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 SVVNALS++L V V R + +F + K + N GTR+ F PDP IFG Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEFRNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFGS 180 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A L + A+L ++ E + + + F GG K +++ Sbjct: 181 -AEICIESLHQRAMQTAFLVPGLRV-------NIEDRVLGKSSSYLFEGGCKQFVEHLSA 232 Query: 279 NRSLISSEIFTGKTE----------------KKGTHRGTVEWAIAWCEENPEIT-SYCNT 321 + GK V+ A+AW + S+ N Sbjct: 233 GELITDVLCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNV 292 Query: 322 ILTDEGGTHESGLRVALTRGI-KKYAELTQNKRAISIISDDL--MISAVGILSVFIREPE 378 I T +GGTH SG AL + I + ++ ++ + + ++SV + EP+ Sbjct: 293 IETPKGGTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQ 352 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLV--QNPIEATKLLEWVIERSEERLRRRKQR 436 F GQTK L + + V N + D + + ++LE V+ + RL R R Sbjct: 353 FEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASR 412 Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E RK A+ LP KL DC N + +ELFIVEGDSA G+A++ARN QA+LP+RGK Sbjct: 413 ETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGK 472 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 ILNV A N + ++Q +G + S + RY KVIIM+DADVDGAHI LL Sbjct: 473 ILNVQKASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILL 532 Query: 556 LTFFYQEMYDLIEQKHLFLISPPL--FRITQGTKSVYAHDEEHKQKILEEFKKHG-KGKI 612 LT F++ M +I +F PPL + + +Y + + +L K+ G + + Sbjct: 533 LTLFFRYMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHRE 592 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFK 672 I R+KGLGEM A QL ET MD +KRTLLR+ ++ + D LMG R + Sbjct: 593 PIQRYKGLGEMDADQLAETTMDRSKRTLLRIRMSD----AQQASDIFALLMGNDVAPRRE 648 Query: 673 FIQERASFIDDVGT 686 FI D + + Sbjct: 649 FIANSVVSTDRIDS 662 >gi|83591344|ref|YP_425096.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170] gi|83574258|gb|ABC20809.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170] Length = 802 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 228/566 (40%), Positives = 340/566 (60%), Gaps = 16/566 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 Y + SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + EV Sbjct: 4 QAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHSEVI 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L+G+G +TV DNGRGIPV+ H + S E+I+T LHAGGKFD ++Y++SGGLHGVG+S Sbjct: 64 LNGDGSVTVCDNGRGIPVDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 122 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD L + + R +F G ++PL+ ++ GT ITF P IF Sbjct: 123 VVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFA-IT 181 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 +D A L + A+L+ V+ + + P +F++ GG++ +++ +++ Sbjct: 182 TYDYATLEHRLRELAFLNSGVRLLLTDKR-----GTEPRTTKFHYDGGIEEFVRYLDKSK 236 Query: 281 SLISSEIFTGKTEKKG-THRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 +++ S T E+ G ++EW ++ E + + N I +GGTH +G R LT Sbjct: 237 TVLHSPPVTAIGERDGMIVELSLEWTDSYHET---VLCFTNNIPQRDGGTHMAGFRGGLT 293 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + YA+ + K +++ DD+ +LSV + +P+F+ QTK KLVS + + VE Sbjct: 294 RTLNSYAQDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVE 353 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 + + +L ++P EA K++ V+E + R R+ RE RK A+ LPGKLADC Sbjct: 354 AVVVERLGQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADC 413 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 +ELFIVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ ++ +I L Sbjct: 414 QNRDPAQSELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTL 473 Query: 517 VQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + RY K+IIMTDADVDG+HI +LLLTFF+++M +++E+ +L++ Sbjct: 474 IAALGTGIGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIA 533 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+R +G Y D+ + L Sbjct: 534 QPPLYRAKRGNSEQYLKDDRELEDYL 559 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ G+ I I R+KGLGEM QL ET +D N R LL+V++N+ + D +D Sbjct: 719 TLINAVMAAGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQ----VSDAEDV 774 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQ+ A + ++ Sbjct: 775 FSTLMGDIVEPRRDFIQDNALNVQNLD 801 >gi|119383170|ref|YP_914226.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222] gi|119372937|gb|ABL68530.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222] Length = 812 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 231/586 (39%), Positives = 333/586 (56%), Gaps = 21/586 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + +Y A SI++L+GLE VR RPGMYIG TD+ LHH+ +EV+DN +DE +AG+ Sbjct: 2 TEPAPQTSDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVTEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V + +G ++V DNGRGIPV+ HP S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ADFVRVKIHADGSVSVRDNGRGIPVDMHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPD 212 LHGVG+SVVNALSD L + + R +F G + L ++GT + F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRGGKEHYARFENGDTVEHLRVVGDAEPGEKGTEVRFLAS 180 Query: 213 -----PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 P + L + A+L+ V+ ++ P + E Y+ G Sbjct: 181 SKEDRPDGTFLNREYSYKVLENRLRELAFLNSGVRIILEDER-----PAEPLRTELYYEG 235 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 G++ +++ +++ + E E+ G +E A+ W + + + N I + Sbjct: 236 GVREFVKFIDRSKTPVMPEPIFITGERNGI---GIEVAMWWNDSYHETVLPFTNNIPQRD 292 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTH +G R ALTR I YA+ + K + DD +LSV + +P+F+ QTK Sbjct: 293 GGTHLAGFRGALTRVINNYAQSSGAARKEKVDFTGDDAREGLTCVLSVKVPDPKFSSQTK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 KLVS + + VE + + + +NP EA +L +IE + R RK RE RKTA Sbjct: 353 DKLVSSEVRPAVEGLIGEKLAEWFEENPAEAKSILGKIIEAALAREAARKARELTRRKTA 412 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV A Sbjct: 413 MDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERAR 472 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +++ ++ QI L+ ALG + LRY K++IMTDADVDGAHI +LLLTFF+++ Sbjct: 473 FDRMLSSDQIGTLITALGTGIGRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQ 532 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 M +LIE HL++ PPL+++++G VY DE + L E G Sbjct: 533 MPELIEAGHLYIAQPPLYKVSRGRSEVYLKDEAALEDYLIEQGVDG 578 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + + R+KGLGEM QL ET +D RT+L+V + L + D Sbjct: 729 SLLQAIFLEGEKGLSLQRYKGLGEMNPEQLWETTLDPAARTMLQVRVED----LGEADDI 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R FIQ+ A ++++ Sbjct: 785 FTKLMGDVVEPRRDFIQQNALSVENLD 811 >gi|294338943|emb|CAZ87287.1| DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) [Thiomonas sp. 3As] Length = 652 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 252/662 (38%), Positives = 356/662 (53%), Gaps = 44/662 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y SSIR+L+GLEPVR RPGMY T H+ EVIDN+ DE + GY I V+L Sbjct: 9 YSESSIRVLKGLEPVRQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYCQHIAVTLHT 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGIS 160 +G ++V D+GRGIP HP+ N +E++ T LHAGGKFD Y SGGLHGVG+S Sbjct: 66 DGSISVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGVS 124 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPDPKIFGD 218 V NAL+ L VTV R + FS G + PL ++ R++R GTR+ PD K F Sbjct: 125 VTNALAARLEVTVWRDGQVAHLVFSGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFDS 184 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A L + +SKA L VK +K + + + GL+ YL + L Sbjct: 185 PH-LPLAELTHLLRSKAVLLPGVKVDLIQEK-------TGDTTHWEYARGLRDYLLSSLP 236 Query: 279 NRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333 I E + +E++ G W +A+ EE SY N I T GGTHE+G Sbjct: 237 AEPYIDLFEGEHYASASEQESFAEGEGAAWCVAFTEEGAVLRESYVNLIPTPAGGTHEAG 296 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L + +K + EL + + ++ +DL A +LS + +P+F GQ K KL S DA Sbjct: 297 LREGLFQAVKGFIELHNLQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDA 356 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 R V A+R + +L + + KL E VI +++ RLR ++ E + + + L PGK Sbjct: 357 LRLVGQAVRPTLELWLHERVDQGKKLAELVIRQAQSRLRAAQKVEKKKGSGVAVL--PGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC TELF+VEGDSAGGSAK R++ QAVLPLRGK+LN +++ N + Sbjct: 415 LTDCESRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTE 474 Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I D+ A+G + D LRY K+ I++DADVDG+HI LLLT F++ LIE+ Sbjct: 475 IHDIAVAIGVDPHGKDDMPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIER 534 Query: 570 KHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621 H+ + PPL+R+ +G K +Y D+ Q ++ +K G G +ISRFKGLG Sbjct: 535 GHVCVARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680 EM A QL +T ++ + R L RV + + ++LMG +A R ++E Sbjct: 595 EMSAEQLWDTTLNPDTRRLYRVRPDD-------AEALFHQLMGKGEAQARRGLMEEYGDQ 647 Query: 681 ID 682 I+ Sbjct: 648 IE 649 >gi|126172261|ref|YP_001048410.1| DNA gyrase subunit B [Shewanella baltica OS155] gi|125995466|gb|ABN59541.1| DNA gyrase subunit B [Shewanella baltica OS155] Length = 805 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 347/582 (59%), Gaps = 18/582 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 +++ +G ++V D+GRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ITIHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS +L +T+ R ++ Q ++ G+P +P+++ GT I F P F D Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDATK-TGTEIRFWPSEDTFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +++ + E F + GG+ ++ Sbjct: 180 V-EFHFEILAKRVRELSFLNSGVGIRLIDERDN-------KNEFFKYEGGISAFVDYLNR 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ ++ ++F E++ TVE A+ W + I + N I +GGTH G R A Sbjct: 232 NKTPVNKDVFHFMQERED--GITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSA 289 Query: 338 LTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRNLNSYMENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE + + + YL++NP +A ++ +++ + R RK R RK A+ LPGKLA Sbjct: 350 VEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + RY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 + PPLF++ +G + Y DE + L G Sbjct: 530 IAQPPLFKVKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQ 571 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ K + I R+KGLGEM QL ET MD R +L+V I+ + Sbjct: 722 EALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVG----ADQL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A + ++ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLD 804 >gi|229587582|ref|YP_002869701.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25] gi|229359448|emb|CAY46289.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25] Length = 805 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 343/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +TV R I+ Q + G+P P++ GT+I F+P + F Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SESTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D++ ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ L+ + I R+KGLGEM QL ET MD +R +LRV I + Sbjct: 718 KEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|302035397|ref|YP_003795719.1| DNA gyrase subunit B [Candidatus Nitrospira defluvii] gi|300603461|emb|CBK39791.1| DNA gyrase, subunit B [Candidatus Nitrospira defluvii] Length = 824 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 230/593 (38%), Positives = 339/593 (57%), Gaps = 29/593 (4%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 D + + SD+Y A I++LEGL+ VR RP MYIG T LHHL EV+DN++ Sbjct: 1 MAKDDQQDNSAKPKSDSYSADQIKVLEGLDAVRKRPAMYIGSTGVDGLHHLVYEVVDNSV 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ IEV++ +G +TVVDNGRGIP H KS E+ LT LHAGGKF+ Sbjct: 61 DEHMAGFGEAIEVTIHIDGSVTVVDNGRGIPTGMHS-TQKKSAAEVALTVLHAGGKFEQG 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y +SGGLHGVGISVVNALS+ L + + + +F Q++ RG P +PL K + RGT+ Sbjct: 120 AYTVSGGLHGVGISVVNALSEWLELEIWQDGQVFEQRYERGKPQAPLAVTGKTKR-RGTK 178 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F+PD +IF F L + + A+L+ + D++ E + F++ Sbjct: 179 VRFKPDGQIFET-LEFSFDVLAQRLRELAFLNKGLSITLKDDRKEKE-------QVFHYK 230 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+ +++ E ++ + I+ +E A+ + + + S+ N I T Sbjct: 231 GGIVSFVDHLNEAKTPLHKPIYVQTERADLI----LEVALQYNDGYAENLFSFANNINTK 286 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 EGGTH G + ALTR I YA K S+ DD+ ++SV +R P+F GQT Sbjct: 287 EGGTHLVGFKAALTRTINSYANANDLLKKDTESLSGDDVREGLTAVVSVKVRNPQFEGQT 346 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KL + + + VE A+ D Y +NP A K++ I+ + R RK ++ + RK+ Sbjct: 347 KAKLGNSEVKGIVEAAVNDALGTYFEENPPVARKIIGKAIDAARAREAARKAKDLIRRKS 406 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADCS+ +ELFIVEGDSAGGSAKQ R+R QA+LPL+GKILNV A Sbjct: 407 ALDGGSLPGKLADCSEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKA 466 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED-----------LRYEKVIIMTDADVDGAHI 551 +K+ ++ +I L+ ALG + + D RY K+++MTDADVDG+HI Sbjct: 467 RFDKMLSSDEIRTLILALGTGIGRKKEDSDKPDKEAFDIARTRYHKIVLMTDADVDGSHI 526 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +LLLTFF+++M +L+E+ ++++ PPLF++ +G Y DE + L + Sbjct: 527 RTLLLTFFFRQMPELLERGYIYIAQPPLFKVKKGKTERYLKDEPAMNEYLADL 579 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 14/113 (12%) Query: 576 SPPLFRITQGTKSVYAHDEEHKQ---KILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 PP ++I E HK ++++ + GK + I R+KGLGEM QL ET Sbjct: 722 KPP-YKIKIKG------TEVHKNGSAELVQAILEEGKQGLNIQRYKGLGEMNPGQLWETT 774 Query: 633 MDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 MD KRTLLRV++ + + LMG + + R FIQ+ A + ++ Sbjct: 775 MDPEKRTLLRVKLED----MTGVDEIFTILMGDEVEPRRNFIQQHALEVRNLD 823 >gi|288818582|ref|YP_003432930.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6] gi|288787982|dbj|BAI69729.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6] gi|308752173|gb|ADO45656.1| DNA gyrase, B subunit [Hydrogenobacter thermophilus TK-6] Length = 786 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 223/578 (38%), Positives = 331/578 (57%), Gaps = 17/578 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 + Y A I+ + GLE VR+RP MYIG E+ LHHL E++DNA+DE +AGYA I V + Sbjct: 4 ERYQAEDIKAVTGLEHVRLRPSMYIGDVGERGLHHLLWEILDNAVDEHVAGYAKNISVVI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G ++V D+GRGIPV+ HP ++++ T L AGGKFD Y SGGLHGVG SV Sbjct: 64 HEDGSVSVEDDGRGIPVDLHP-DTGIPAVQMVFTMLGAGGKFDKKVYRYSGGLHGVGASV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L V V R I Q++SRG PL PL+ RGT++TF+PD IF Sbjct: 123 VNALSEWLAVEVYRDGKIHRQEYSRGEPLYPLKVIGSTIK-RGTKVTFKPDADIFETT-K 180 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 + + + AYL+ ++ E + F G++ ++ + Sbjct: 181 IKLDLVERRVRELAYLNPDCTFRLLDERIGKE-------FVYKFDKGIEELVKFLSTGKE 233 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + ++ + E++G V+ A + ++ + S+ N I T EGGTH +G R LT+ Sbjct: 234 PLFDQVIRIREEREGV---DVDVAFLYTKDYRELVESFVNNIKTVEGGTHITGFRSGLTK 290 Query: 341 GIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + + ++ + ++ + +DL V ++S + EP+F GQTKTKL + + + VE+ Sbjct: 291 AVMRSLQIIKLQKELKEAITGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQNVKSIVES 350 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + Y +N K++E +E + R +K +E V RK+ + LPGKLADCS Sbjct: 351 VVYEHLSEYFEENKEIYRKIVEKAVEAALAREAAKKAKELVRRKSPLEDTTLPGKLADCS 410 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + ELFIVEG+SAGGSAKQ R+R QA+LPLRGKILNV A +K+ +N++I +V Sbjct: 411 EKDPQKCELFIVEGESAGGSAKQGRDRRTQAILPLRGKILNVEKARLDKVFSNEEIKAIV 470 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ++GC + LRY KVI+MTDADVDG+HI +LLLTFFY+ M LIE HL++ P Sbjct: 471 SSIGCGIGDELDLSKLRYHKVILMTDADVDGSHIRTLLLTFFYRYMPKLIEAGHLYIAQP 530 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 PL+R+ +G +Y D+ + L E+ K+ I+ Sbjct: 531 PLYRLKKGKTVLYLKDDRELENTLMEYIKNQGTLIDAQ 568 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +IL F + K E+ R+KGLGEM QL ET M+ R LL++ I + Sbjct: 702 HQILSSFMELAKESFEVQRYKGLGEMNPEQLWETTMNPATRRLLKISIED----AAEADR 757 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI+ A + ++ Sbjct: 758 IFTILMGEDVEPRREFIETYAREVRNLD 785 >gi|94967039|ref|YP_589087.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345] gi|94549089|gb|ABF39013.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 879 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 219/600 (36%), Positives = 348/600 (58%), Gaps = 12/600 (2%) Query: 15 QSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKAL 74 ++ ++ KK + N + S +Y+ SI++L G+E VR RP MYIG T E L Sbjct: 5 ETAAAAAAEKKLNGATEPKKNGNGNGSSDYNEDSIKVLGGMEAVRKRPAMYIGSTGEMGL 64 Query: 75 HHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPV-ENHPKFPNKSTLEII 133 HHL EV+DN++DE +AG+A+ I+V++ + +TV+DNGRGIP + +++ Sbjct: 65 HHLVYEVVDNSVDEALAGHADRIDVTIHIDNSITVIDNGRGIPTGDMDIDGEMIPAAQVV 124 Query: 134 LTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL 193 +T LHAGGKFD+S Y++SGGLHGVG+S VNALS L + + R ++ Q++S G+P + L Sbjct: 125 MTVLHAGGKFDSSNYKVSGGLHGVGVSCVNALSSLLELEIWRDGHVWQQEYSEGVPTTKL 184 Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 +K K GT+I F PD KIF + ++ L + A+L+ + + ++ Sbjct: 185 KKSGKTTKL-GTKIHFIPDAKIFTV-SEYNYDTLANRLRELAFLNKGLLITLTDERTTDP 242 Query: 254 KYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN- 312 K G + +EF + GG+ +++ +S++ + + E+ G +E A+ + + Sbjct: 243 KTGESKHQEFKYTGGIAEFIKHLNRGKSVLHEKPIYMEAERDGV---AMEIALQYNDAYS 299 Query: 313 PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMISAVGIL 370 + S+ N I T +GGTH G R +LTR I + + + ++ DD+ V ++ Sbjct: 300 ETVFSFANNINTVDGGTHLQGFRSSLTRTINYAGQQLGLFKDVKENLSGDDVREGLVAVI 359 Query: 371 SVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 SV + +P+F GQTK KL + D V+ + + + QNP A K++ IE S R Sbjct: 360 SVKLSQPQFEGQTKGKL-NSDIAGIVQAFVNERLGAFFEQNPPVARKIINKAIEASRARE 418 Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 RK R+ RK A+ LPGKLADCS+ E+++VEG+SAGG+AKQ R+R QA+ Sbjct: 419 AARKARDLTRRKGALDGGGLPGKLADCSERQPERCEVYLVEGESAGGTAKQGRDRRFQAI 478 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDG 548 LPL+GKILNV A +K+ +++I ++ ALG + + LRY K+I+MTDADVDG Sbjct: 479 LPLKGKILNVEKARYDKMLGHEEIRAMITALGTGIGKDDFDYAKLRYGKIILMTDADVDG 538 Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +HI +LLLTFF++ M +LI++ ++F+ PPL+RI +G Y +E K++ + G Sbjct: 539 SHIRTLLLTFFFRHMQELIKRGNVFIAQPPLYRIKKGKFEQYIKNEAEFVKVMVKRAADG 598 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++ + GK + + R+KGLGEM A QL T MD +RTLL V++ + +T+ Sbjct: 795 RELFDYVLSEGKKEYSVQRYKGLGEMTAEQLWMTTMDPERRTLLEVKLED----MTETET 850 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R KFI+E A + ++ Sbjct: 851 IFSTLMGEDVEARRKFIEENALDVKNLD 878 >gi|148272832|ref|YP_001222393.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830762|emb|CAN01702.1| putative topoisomerase II subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 692 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 230/697 (32%), Positives = 333/697 (47%), Gaps = 63/697 (9%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ NY A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ + I+V Sbjct: 2 AASNYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGHGDRIDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V D RG+PV+ PK S +E++ T LHAGGKF + +Y SGGLHGVG Sbjct: 62 RLHPDGSVEVRDTARGVPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201 SVVNALS+ L V V R + F RG P ++ E + Sbjct: 121 SVVNALSERLDVEVDRGGKTHAMSFRRGEPGIFEDEGEASPDAPFRPFTSGSELRVVGKV 180 Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 GTRI + D +IF A F LL + A+L + + P Sbjct: 181 RKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIEDLR-----GEQP 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302 +E F F GG+ ++ + L + G + T V Sbjct: 236 VRESFRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTAGGAMVPTELTRECAV 295 Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SII 358 + A+ W S+ N I T +GGTH++G L + ++ E K + + Sbjct: 296 DIALRWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLE 355 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIE 414 DD++ +L+V EP+F GQTK L + + V ++ ++ + Sbjct: 356 KDDVLAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMAERFASTRREDKAQ 415 Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 LLE V+ + R+ R +E RK A+ LP KL DC N +ELFIVEGDS Sbjct: 416 TAVLLEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDS 475 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 A G+AK AR+ QA+LP+RGKILNV A + +N + ++Q LG + + Sbjct: 476 ALGTAKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRTFDLSAA 535 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587 RY K+IIM+DADVDGAHI +LLLT F++ M +I++ +F PPL R+ ++ Sbjct: 536 RYGKIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595 Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 +Y + E +L + K+ GK + I R+KGLGEM A QL T MD R Sbjct: 596 VIYTYSERELAAVLAQAKRQGKRYQDPIQRYKGLGEMDADQLATTTMD----RRNRTLRR 651 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 ++ + LMG R +FI + A + D Sbjct: 652 VRVDDAEAATRMFELLMGNDVAPRKEFIIDGAGSVRD 688 >gi|124516516|gb|EAY58024.1| DNA gyrase, B subunit [Leptospirillum rubarum] gi|206603407|gb|EDZ39887.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 818 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 221/573 (38%), Positives = 332/573 (57%), Gaps = 14/573 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y A IR+LEGLE VR+RPGMYIG T LHHL E++DN++DE +AG+ Sbjct: 2 SSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I +++ + +TV DNGRGIP H + +S E++LT LHAGGKF+N+ Y++SGGL Sbjct: 62 SEIHITIHPDRSVTVADNGRGIPTGMHAEQ-KRSAAEVVLTVLHAGGKFNNNLYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L + + + I Q + +G P +PL + +RGT I F PD Sbjct: 121 HGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETT-QRGTIIRFWPDMT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 I F L + A+L+ + ++ + E E F+F GG+++++ Sbjct: 180 IMET-DQFSFDTLAHRFRELAFLNPVLTIHLKDEETLRE-------ETFHFEGGVQSFVS 231 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 EN+ + +F KT + G+ + V + EN + + N I T EGGTH G Sbjct: 232 FLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENETVLGFANNIHTREGGTHVRGF 290 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 R A+T+ I ++ Q + + +D+ GI+SV I P+F GQTK KL S Sbjct: 291 RTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 +E+ L + ++P+ A K+ E + ++ R RK ++ RK + LPGKL Sbjct: 351 AMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQ 512 ADC ++ +EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILNV + EK N + Sbjct: 411 ADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDE 470 Query: 513 IMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ A+GC + E+ LRY K+IIMTDADVDGAHI +LLLTFF++ M LI+ + Sbjct: 471 VRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQF 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +++ PPL++++ G + Y ++E Q + E Sbjct: 531 VYIAQPPLYKVSYGRQERYLLNDEALQAYILEL 563 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Query: 580 FRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 F + +G + + LE + K+ I R+KGLGEM QL ET MD ++ Sbjct: 717 FVLRRGAEGEEIRFRSPRELLSFLES---PVRQKLSIQRYKGLGEMNPEQLWETTMDPSR 773 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + + LMG + R +FI++ A + ++ Sbjct: 774 RTLLKVSIPDYV----EADRVFTTLMGEQVAPRREFIEKHALDVANLD 817 >gi|90408445|ref|ZP_01216605.1| DNA gyrase subunit B [Psychromonas sp. CNPT3] gi|90310429|gb|EAS38554.1| DNA gyrase subunit B [Psychromonas sp. CNPT3] Length = 809 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 230/581 (39%), Positives = 345/581 (59%), Gaps = 22/581 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 A ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ N I Sbjct: 2 AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEILDNSIDEALAGHCNDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++ +G ++V D+GRGIPV H K S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 TTIHTDGSVSVRDDGRGIPVGIH-KEEGVSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 ISVVNALS +L +T+ R + Q + G P +PL+ ++ GT I F P + F D Sbjct: 121 ISVVNALSKKLLLTIKRDGHVHQQTYIHGDPEAPLKVIGDT-DETGTEIRFWPSEETFAD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++E + + F + GG++ +++ + Sbjct: 180 VL-FYYNILAKRLRELSFLNSGVSIKLIDERE------EDKSDLFCYEGGIEAFVKYLNK 232 Query: 279 NRSLISSEIFTGKTEK-KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +++ I +IF E GT VE A+ W + I + N I +GG+H +G R Sbjct: 233 SKTPIHQKIFHFNVENADGTC---VEVAMQWNDGFQENIYCFTNNIPQRDGGSHLTGFRS 289 Query: 337 ALTRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 LTR + Y E +K S D ++SV + +P+F+ QTK +LVS + Sbjct: 290 GLTRTLNSYMEKEIAKVKNSKNKASTEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 + VE+A+ + +L++NP EA + +I+ + R RK RK A+ LP Sbjct: 350 VRPVVESAMGEKLQEFLLENPSEARIITSKIIDAARAREAARKARDMTRRKGALDLAGLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ Sbjct: 410 GKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 469 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 Q++ L+ ALGC R +Y + RY ++IIMTDADVDG+HI +LLLTFFY++M +LIE+ Sbjct: 470 QEVATLITALGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIER 529 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKG 610 +++ PPL+++ +G + Y DE Q L G Sbjct: 530 GFIYIAQPPLYKVKKGKQETYVKDESELQAYLTTLAMEGSS 570 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + ++ K + I R+KGLGEM QL +T MD N R +L+V I + Sbjct: 726 EAVQWLMHESKRGLYIQRYKGLGEMNPDQLCDTTMDPNTRHMLQVRIEDAV----AADQL 781 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI+E A ++++ Sbjct: 782 FSTLMGDHVEPRRAFIEENALRVENLD 808 >gi|257455167|ref|ZP_05620405.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60] gi|257447500|gb|EEV22505.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60] Length = 830 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 229/586 (39%), Positives = 353/586 (60%), Gaps = 19/586 (3%) Query: 22 KLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSE 80 + + S ++ + Y + SIR+L GLE VR+RPGMYIG TD+ LHH+ E Sbjct: 5 SANVADQTQQSITQSSHQENKAYGSDSIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFE 64 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 V+DNA+DE +AG+ + I++ + + ++V DNGRGIPV+ HP+ S ++I+T LHAG Sbjct: 65 VVDNAIDEALAGHCDQIDIIIHEDESVSVKDNGRGIPVDIHPE-EGVSAAQVIMTVLHAG 123 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKFD+++Y++SGGLHGVG+SVVNALS +L + + R +SQ ++ G P+SP+E+ E + Sbjct: 124 GKFDDNSYKVSGGLHGVGVSVVNALSKKLVLDIWRDGYHYSQTYADGEPVSPIEQLEATQ 183 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GT++ F P IF FD L K + ++L+ V+ + +++ ++ Sbjct: 184 -QTGTQVRFYPSDDIFTGTI-FDFEILAKRLRELSFLNSGVRIVLTDERD-------DKR 234 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 EF GGL ++ ++ ++ E G +VE A+ W + ++ + Sbjct: 235 HEFEHVGGLSEFVHYINAGKTGLNEVFHFTSEENDGI---SVEVALQWTDSYNEKVLCFT 291 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH SG R ALTR + Y + K +++ DD I+SV + +P Sbjct: 292 NNIPQKDGGTHLSGFRSALTRCLNSYMDSENLMKKEKVAVTGDDAREGLTAIISVKVPDP 351 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR- 436 +F+ QTK KLVS + + VE+A+ D F YL++NP A + +I+ + R RK R Sbjct: 352 KFSSQTKDKLVSSEVKPAVESAMHDKFSAYLLENPNAAKGIAGKIIDAARAREAARKARE 411 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 RKT + LPGKLADC + +EL+IVEGDSAGGSAKQ RNR QA+LPL+GKI Sbjct: 412 MTRRKTTLDIAGLPGKLADCQEKDPAMSELYIVEGDSAGGSAKQGRNRKMQAILPLKGKI 471 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ ++Q++ L+ ALG +Y + LRY K+IIMTDADVDG+HI +LL Sbjct: 472 LNVERARFDKMLSSQEVGTLITALGTGIGPDEYNPDKLRYHKIIIMTDADVDGSHIRTLL 531 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LTFF+++ +L+E+ H+++ PPL+++ +G + +Y D+E + L Sbjct: 532 LTFFFRQTPELLERGHIYIAQPPLYKVKKGRQELYVKDDEALKAYL 577 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + D + + + + + I R+KGLGEM A QL ET MD R +L Sbjct: 733 IAKGDKKLPIKDMGYLWQFI---MSDARRGLAIQRYKGLGEMNADQLWETTMDPENRHML 789 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+E A + ++ Sbjct: 790 KVTIEDAI----AADHLFSCLMGDDVEPRRAFIEENALTVTNLD 829 >gi|77456232|ref|YP_345737.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1] gi|77380235|gb|ABA71748.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1] Length = 805 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SEENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVKDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +TV R I+ Q + G+P +P+ GT+I F+ + F Sbjct: 121 GVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGD-SETTGTQIHFKASSETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D++ ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|217978065|ref|YP_002362212.1| DNA gyrase, B subunit [Methylocella silvestris BL2] gi|217503441|gb|ACK50850.1| DNA gyrase, B subunit [Methylocella silvestris BL2] Length = 821 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 236/585 (40%), Positives = 340/585 (58%), Gaps = 21/585 (3%) Query: 28 EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAM 86 SPAF A Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+ Sbjct: 4 PAAASPAFIPAEAEAYYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 63 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+A + V+L+ +G + V D+GRGIP + H + S E+I+T LHAGGKFD + Sbjct: 64 DEALAGHATRVTVTLNADGSVAVTDDGRGIPTDIHSE-EGVSAAEVIMTQLHAGGKFDQN 122 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RN 201 +Y++SGGLHGVG+SVVNALS L + + R +F+ G ++PL+ + Sbjct: 123 SYKVSGGLHGVGVSVVNALSSWLKLRIWRDGKEHLIEFAHGDAVTPLKVTGPAPTHDGKP 182 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 KRGT +TF+ P+ F +D A + + A+L+ V+ + + E Sbjct: 183 KRGTEVTFQASPETFTKV-DYDFATIEHRLRELAFLNSGVRIELTDAR-----GAEVRSE 236 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCN 320 Y+ GGL+ +++ ++ + ++ K E++ TVE A+ W + E + N Sbjct: 237 TLYYDGGLEAFVRYLDRAKTPLIAKPILIKGEREAI---TVEVALWWNDSYHENVLPFTN 293 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPE 378 I +GGTH + R ALTR + YAE + + + DD +LSV +P+ Sbjct: 294 NIPQRDGGTHLAAFRAALTRQLTGYAERSGLLKREKVDLTGDDCREGLTCVLSVKAPDPK 353 Query: 379 FAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE- 437 F+ QTK KLVS + + VE + + +L ++P EA ++ VIE + R RK RE Sbjct: 354 FSSQTKEKLVSSEVRPAVEGLVNEMLGSWLEEHPQEARTVVGKVIEAGQAREAARKAREL 413 Query: 438 VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKIL 497 RK A+ LPGKLADC + +ELF+VEGDSAGGSAKQ RNR QAVLPLRGKIL Sbjct: 414 TRRKGALDISNLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNREYQAVLPLRGKIL 473 Query: 498 NVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLL 556 NV A +K+ ++Q+I L+ ALG + LRY K+IIMTDADVDG+HI +LLL Sbjct: 474 NVERARFDKMLSSQEIGTLITALGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLL 533 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TFF+++M +LIE+ HLF+ PPL+++ +G Y DE ++ L Sbjct: 534 TFFFRQMRELIERGHLFIAQPPLYKVKRGGSEQYLKDERAREDYL 578 Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%) Query: 599 KILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++L G+ I ++ R+KGLGEM QL ET +D + R+LL+V+I D D Sbjct: 737 ELLSAVMAAGQKGISQMQRYKGLGEMNPEQLWETTLDRDARSLLQVKI----KEGDDADD 792 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQE A + ++ Sbjct: 793 IFVKLMGDVVEPRREFIQENALNVSNLD 820 >gi|121593432|ref|YP_985328.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42] gi|120605512|gb|ABM41252.1| DNA topoisomerase IV subunit B [Acidovorax sp. JS42] Length = 660 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 237/670 (35%), Positives = 345/670 (51%), Gaps = 38/670 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +++ +Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG+ Sbjct: 4 KPASTSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEIS 151 I+V+L +G ++V D+GRGIP HP+ N +E++ T LHA K Y S Sbjct: 61 KKIKVTLHTDGSVSVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKGKGGAYSFS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209 GGLHGVG+SV NAL+ L V R+ + F+ G PL + K+GT + Sbjct: 120 GGLHGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAVRPLQAGERKQGTTVRV 179 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L + +SKA L V +K + + + GGL Sbjct: 180 WPDAKYFESSN-LPMGELTHLLRSKAVLMPGVTVQLVNEKTRD-------TQTWQYKGGL 231 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTD 325 + YL L +I G ++ E A E P SY N I T Sbjct: 232 RDYLAQTLSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTS 291 Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHESGLR L +K + E + + + ++ +D+ A +L+ + +P+F GQ K Sbjct: 292 AGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 +L S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + + Sbjct: 352 ERLNSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKRKGSGV 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L PGKL DC E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN Sbjct: 412 AVL--PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDR 469 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ N ++ D+ A+G D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 DRLFANTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 529 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIE 613 LIE H+F+ PPLFR+ +G K VYA DE + IL++ K G + K + Sbjct: 530 HFPKLIEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQ 589 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672 ISRFKGLGEM A QL ET ++ + R LL V++ T+ I KLMG +A R + Sbjct: 590 ISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GTFDFSATEGLITKLMGKGEAAARRE 647 Query: 673 FIQERASFID 682 ++ +D Sbjct: 648 LMELHGDLVD 657 >gi|88813027|ref|ZP_01128269.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231] gi|88789660|gb|EAR20785.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231] Length = 805 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 227/569 (39%), Positives = 348/569 (61%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 SA Y ++ I+IL GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AG+ I Sbjct: 2 SAQSEYGSAQIKILRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVADNAVDEALAGHCTEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 EV + + +TV DNGRGIPV+ HP+ +S E+I+T LHAGGKFDN +Y++SGGLHGV Sbjct: 62 EVMIHADNSVTVTDNGRGIPVDIHPE-EGRSAAEVIMTMLHAGGKFDNRSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L + + + I Q++ G PL+PL++ + + GT++TF P IF Sbjct: 121 GVSVVNALSERLRLVIKKSGHIHLQEYRDGEPLAPLKQLGETND-TGTQVTFHPSSNIFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F+ L K + ++L+ V+ ++ E + F + GG++ ++Q Sbjct: 180 NI-EFNYDILAKRFRELSFLNPGVRISLKDERTDKE-------DVFEYAGGIRAFVQHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + + F K +E A+ W + I + N I +GGTH +G R Sbjct: 232 KNKTPLHRDAFYLNFWKGPV---GIEIAMQWNDSYQENIFCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I +Y E K + DD+ ++SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTINQYMESEGYSKKAKLVPTGDDVREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKG 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKL 453 VE+ L + + +L ++P A ++E VIE + R R+ RE+ R+ + LPGKL Sbjct: 349 VVESVLAEHLNEWLYEHPGSAKAIVEKVIEAARARDAARRAREMTRRKGVLDVAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 ADCQERDPARSELYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLSSAEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC + ++ + LRY ++IIMTDADVDG+HI +LLLTFFY++M +L+E+ H+ Sbjct: 469 GTLITALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMVELVERGHI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y DE+ + L Sbjct: 529 YIAQPPLYKVKRGKQEDYVKDEKELIEHL 557 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 +++ K + + R+KGLGEM +QL ET MD R LL+V I + S Sbjct: 719 EFHEVVNWLLDEAKRGLSVQRYKGLGEMNPAQLWETTMDPAARRLLQVRIEDVVAS---- 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 D LMG + + R +FI+ A ++ Sbjct: 775 DDIFTTLMGDQVEPRREFIENNALSASNLD 804 >gi|49473721|ref|YP_031763.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse] gi|49239224|emb|CAF25544.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse] Length = 810 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 231/566 (40%), Positives = 333/566 (58%), Gaps = 16/566 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 ++YDA+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A L+ V+ Sbjct: 12 NDYDAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATLVNVT 71 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGLHGVG+S Sbjct: 72 LHTDGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS L + + R I F+ G+ SPL+ + GT I F P + F Sbjct: 131 VVNALSVWLQLRIKRNGKIHEMSFTHGVADSPLKTVGDCDAENGTEIRFLPSSETFT-MV 189 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 FD L + + A+L+ V + + ++ GGL +++ +++ Sbjct: 190 EFDFETLERRLRELAFLNSGVHILLVDQRHADVRSVE-----LHYEGGLTEFVKYIDQSK 244 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + + K G +V+ A+ W + ++ + N I +GGTH G R ALT Sbjct: 245 KALLDCPIYIASVKDGV---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSALT 301 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I YAE + K I++ DD ILSV + +P+F+ QTK KLVS + + VE Sbjct: 302 RQINGYAESSGIAKKEKINLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 361 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 N + + +L ++P EA + V+E + R RK RE RK A+ LPGKLADC Sbjct: 362 NLVNEGLSAWLEEHPSEAKIVTSKVVEAATAREAARKARELTRRKGALDITSLPGKLADC 421 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ I L Sbjct: 422 QERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGTL 481 Query: 517 VQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++ Sbjct: 482 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 541 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G Y +E ++ L Sbjct: 542 QPPLYKVARGKSFQYIKNEAAFEEFL 567 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE +GK I + R+KGLGEM A QL ET ++ + R LL+V+IN D Sbjct: 727 NLLESIFTNGKRGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDAT----DADLL 782 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FI++ A + ++ Sbjct: 783 FSRLMGDEVEPRRAFIKDNALSVANLD 809 >gi|110635929|ref|YP_676137.1| DNA gyrase subunit B [Mesorhizobium sp. BNC1] gi|110286913|gb|ABG64972.1| DNA gyrase subunit B [Chelativorans sp. BNC1] Length = 815 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 239/565 (42%), Positives = 341/565 (60%), Gaps = 16/565 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA+L+ VSL Sbjct: 14 EYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYASLVTVSL 73 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + +G TV DNGRGIP + H S E+I+T LHAGGKFD ++Y++SGGLHGVG+SV Sbjct: 74 NPDGSCTVTDNGRGIPTDIHA-GEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 132 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R+ I FS G+P +PL + GT +TF P P+ F Sbjct: 133 VNALSTWLKLKIRRKGQIHEMSFSHGVPDAPLAVTGDAGEETGTEVTFLPSPETFTKT-D 191 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD A L + A+L+ V+ S + K ++F + GG+ +++ + Sbjct: 192 FDYATLEHRLRELAFLNSGVRILLSDRRHADLKE-----QQFLYDGGIIEFVKYLDRAKK 246 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + E + E+ G TVE A+ W + E ++ N I +GGTH +G R ALTR Sbjct: 247 PLIPEPISISGERDGI---TVELAMWWNDSYHENVLAFTNNIPQRDGGTHMAGFRGALTR 303 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 + YA+++ K +S+ DD +LSV + +P+F+ QTK KLVS + + VE+ Sbjct: 304 QVTSYADVSGLTKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPVVES 363 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCS 457 + + +L ++P EA L+ V+E + R RK RE+ R+ + LPGKLADC Sbjct: 364 LVNEALGTWLEEHPAEAKILVGKVVEAAAAREAARKARELTRRKGVLDITSLPGKLADCQ 423 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +ELFIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ I L+ Sbjct: 424 ERDPAKSELFIVEGDSAGGSAKSGRSRKNQAILPLRGKILNVERARFDRMLSSDMIGTLI 483 Query: 518 QALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ HL++ Sbjct: 484 TALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQ 543 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++T+G Y DE ++ L Sbjct: 544 PPLYKVTRGKSVQYIKDEAAFEEFL 568 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 13/127 (10%) Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618 + L E PP+ R +++V +L+ G+ + + R+K Sbjct: 701 IDRYTPRLQEV----FAMPPVLRRNDKSETVSG-----PMALLDAVFATGRKGLTMQRYK 751 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 GLGEM A QL ET +D + R+LL+V++ D +LMG + + R FIQE A Sbjct: 752 GLGEMNAEQLWETTLDPDARSLLQVKVPDAT----DADALFARLMGDEVEPRRDFIQENA 807 Query: 679 SFIDDVG 685 + ++ Sbjct: 808 LSVANLD 814 >gi|56707333|ref|YP_169229.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110669803|ref|YP_666360.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. tularensis FSC198] gi|224456396|ref|ZP_03664869.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. tularensis MA00-2987] gi|254370010|ref|ZP_04986017.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254874168|ref|ZP_05246878.1| topoisomerase IV [Francisella tularensis subsp. tularensis MA00-2987] gi|56603825|emb|CAG44796.1| Topoisomerase IV, subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320136|emb|CAL08179.1| Topoisomerase IV, subunit B [Francisella tularensis subsp. tularensis FSC198] gi|151568255|gb|EDN33909.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254840167|gb|EET18603.1| topoisomerase IV [Francisella tularensis subsp. tularensis MA00-2987] gi|282158458|gb|ADA77849.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. tularensis NE061598] Length = 627 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|90019653|ref|YP_525480.1| DNA gyrase subunit B [Saccharophagus degradans 2-40] gi|89949253|gb|ABD79268.1| DNA gyrase subunit B [Saccharophagus degradans 2-40] Length = 808 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 230/566 (40%), Positives = 342/566 (60%), Gaps = 21/566 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ N I+V + Sbjct: 7 NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCNEIKVVI 66 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 N +TV DNGRGIP E H S E+I+T LHAGGKFD++TY++SGGLHGVG+SV Sbjct: 67 HPNESVTVSDNGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSV 124 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS+ L +T+ R +F Q + G+P +PL + GT++ F+P + F + Sbjct: 125 VNALSEVLTLTIRRGGQVFEQVYHHGVPQAPLTVIGET-EVSGTQVHFKPSAETFTNI-E 182 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F +L K + ++L+ V+ ++ E + F + GGLK ++ +N++ Sbjct: 183 FHFDQLGKRLRELSFLNSGVRIVLIDERSGKE-------DVFEYEGGLKAFVGYLNQNKN 235 Query: 282 LISSEIFTGKT-EKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 I+ I E+ G VE A+ W + I Y N I +GGTH +G R ALT Sbjct: 236 PINKVIHFSTFREEDGV---GVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRAALT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + VE Sbjct: 293 RNLNSYIESEGLLKKEKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVE 352 Query: 398 NALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADC 456 L F YL++NP EA +++ + + R+ + RK A+ LPGKLADC Sbjct: 353 QELSKSFSEYLLENPQEAKQIVGKMMEAARAREAARKAREMTRRKGALDIAGLPGKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q++ L Sbjct: 413 QEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTL 472 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALGC ++ E LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H+++ Sbjct: 473 ITALGCGIGAQEFNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVYIA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL++I +G + Y D++ + L Sbjct: 533 QPPLYKIAKGKQEQYLKDDDALTQFL 558 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ L+ K I R+KGLGEM QL ET MD R +L+V + + Sbjct: 723 FKEALDWIMAESKKGYGIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDAIG----AD 778 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI+ A + ++ Sbjct: 779 QIFTCLMGDNVEPRREFIETNALSVANLD 807 >gi|319760166|ref|YP_004124104.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF] gi|318038880|gb|ADV33430.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF] Length = 808 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 236/566 (41%), Positives = 341/566 (60%), Gaps = 19/566 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +YD+SSI+IL+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE IAGY I V Sbjct: 3 SSYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAIAGYCQKIVVI 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + +++ D+GRGIP H + S E+I+T LHAGGKFDN++Y++SGGLHGVG+S Sbjct: 63 IHQDNSVSIQDDGRGIPTGLHEE-EGISAAEVIMTVLHAGGKFDNNSYKVSGGLHGVGVS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS++L + + R I+ Q + G P SPL GT I F P+ +IF +K Sbjct: 122 VVNALSEKLELIIERDLKIYKQIYFFGKPKSPLSIVGDSNK-SGTTIRFWPNFQIFTNKI 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F A L + Q ++L+ V ++ E E F GG+K +++ N+ Sbjct: 181 EFQYAVLARRFQELSFLNAGVSIVLCDERNGKE-------EVFCCNGGIKEFIKYLNINK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 S I S IF K VE A+ W + I S+ N I +GGTH SGL+ A+T Sbjct: 234 SPIHSNIFYCMGNK---GEVNVEVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAIT 290 Query: 340 RGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 R + Y + K I + +D V +LSV I+ P+F+ QTK KLVS + + V Sbjct: 291 RTMHFYIDKEGYNNKKTKIITLGEDAREGLVAVLSVKIQNPKFSSQTKEKLVSSEVKPAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLAD 455 E+ + + + ++NPI++ ++ VI + R RK R+++R+ + LPGKL+D Sbjct: 351 ESLIYEKLMEFFLENPIDSKNIIGKVISAARARESARKVRDLSRRKGLSDFSILPGKLSD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++M Sbjct: 411 CQEKNPRYSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVMT 470 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC LRY +I+MTDADVDGAHI +LLLTFFY+ M ++IE+ H+F+ Sbjct: 471 LITALGCGIGQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRHMPEIIERGHIFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G +S Y DEE + Sbjct: 531 AQPPLYKVQKGIQSKYLKDEEEMYQY 556 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + +E + + + I R+KGLGEM QL ET M+ R +LRV + + + Sbjct: 723 FNQAIEWLMQQSRKGLIIQRYKGLGEMNPDQLWETTMNPQNRCMLRVTVKDAI----EAD 778 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + + LMG + R FI+ A +V Sbjct: 779 NLFSTLMGDLVEPRRAFIEANALKATNVD 807 >gi|167627291|ref|YP_001677791.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597292|gb|ABZ87290.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 627 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 244/643 (37%), Positives = 359/643 (55%), Gaps = 21/643 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E++DN++DEV+AGYA+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIVDNSVDEVLAGYASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YDDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS +L + R ++ F G+ LE + V + GT+I F P+ K F D Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + E+ ++F GLK YL KLE Sbjct: 177 KVNVKALKNLLEAKAILCKALTIKYSNEIK-------KERISWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPLEPFMIDNFSNGDSYLDAV-FCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYE 288 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + + I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKTYIEKNSLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIIENINSIAQKRI-NADKKTTRKRIMNTSIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q++ ++ A Sbjct: 408 DINSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE K+KIL E K GKI I RFKGLGEM QL+E+AMD + R Sbjct: 527 FRIDIGKNTFYALDENEKEKILAENAKL-TGKINIMRFKGLGEMNPIQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 LL++ I+ + + L +A +R +++ + Sbjct: 586 LLQLTISNTYDDAEILDML---LAKKRAKDRRDWLENHGDKAE 625 >gi|114568568|ref|YP_755248.1| DNA gyrase subunit B [Maricaulis maris MCS10] gi|114339030|gb|ABI64310.1| DNA gyrase subunit B [Maricaulis maris MCS10] Length = 800 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 234/574 (40%), Positives = 334/574 (58%), Gaps = 17/574 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEQANQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V+L +G +V D+GRGIP + H + S ++I+T LHAGGKFD ++Y++SGGLH Sbjct: 62 EVLVTLHADGSASVRDDGRGIPTDIHQE-EGVSAAQVIMTQLHAGGKFDQNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFRPDPK 214 GVG+SVVNALSD + +T+ R +F RG L+ ++GT + F P + Sbjct: 121 GVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFMPSEE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F F+ L + A+L+ VK ++E + + GG+ ++ Sbjct: 181 TFT-MTEFNRETLQHRLRELAFLNSGVKITLRDEREA-----ELYSDTMVYDGGVAAFVA 234 Query: 275 TKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 N++ I + EK G +EW ++ E + + N I +GGTH +G Sbjct: 235 HLDRNKTPIFTPPVLITGEKDGVAVEAALEWNDSYHEN---VLCFTNNIPQRDGGTHLAG 291 Query: 334 LRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YA + K +SI DD +LSV + +P+F+ QTK KLVS + Sbjct: 292 FRGALTRIINTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VE A+ + + ++P EA ++ +IE + R RK RE RK+A+ LP Sbjct: 352 VRPAVEGAVGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISSLP 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV A +++ + Sbjct: 412 GKLADCQEKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDRMLGS 471 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +Q+ L+ ALG R Q E LRY KVIIMTDADVDGAHI +LLLTFFY++M +LIE+ Sbjct: 472 EQVGTLITALGTGIGRDQINYEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIEK 531 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 +L++ PPL++I +G Y D+ L E Sbjct: 532 GYLYIAQPPLYKIAKGRSERYVKDQAEMDAYLIE 565 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++++ G ++I R+KGLGEM QL ET +D N R+LL+V + + Sbjct: 717 RELVDAVVVSGAKGMKIQRYKGLGEMNPGQLWETTLDPNARSLLQVSVTH----ADTADE 772 Query: 658 SINKLMGTKADERFKFIQERASFID 682 +KLMG + R FIQE A + Sbjct: 773 LFSKLMGDVVEPRRDFIQEHALEAE 797 >gi|319403524|emb|CBI77105.1| DNA gyrase subunit B [Bartonella rochalimae ATCC BAA-1498] Length = 809 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 232/572 (40%), Positives = 340/572 (59%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 A +Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA Sbjct: 5 TTSPACGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 65 TLVNVTLHADGSCSVRDNGRGIPTDIHP-TEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+ G+ SPL+ + ++ GT ITF P + Sbjct: 124 HGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSPLKIVDDCDSESGTEITFLPSSE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F FD L + + A+L+ + + + + ++ GGL +++ Sbjct: 184 TFT-MVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVE-----LHYEGGLIEFVK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + +K G +V+ A+ W + ++ + N I +GGTH +G Sbjct: 238 HIDQSKKALIDNPIYITNQKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA L+ V+E + R RK RE RK A+ LP Sbjct: 355 VRPIVENLVNEGLSSWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 + I L+ ALG + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++++G Y +E ++ L Sbjct: 535 GHLYIAQPPLYKVSRGKSFQYIKNEAAFEEFL 566 Score = 137 bits (345), Expect = 6e-30, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE K+GK + + R+KGLGEM A QL ET ++ + RTLL+V+IN D Sbjct: 726 SLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDAT----DADSL 781 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R FIQ+ A + ++ Sbjct: 782 FSRLMGDEVEPRRSFIQDNALSVANLD 808 >gi|87201322|ref|YP_498579.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444] gi|87137003|gb|ABD27745.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 835 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 224/588 (38%), Positives = 345/588 (58%), Gaps = 19/588 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 + N +++Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE + Sbjct: 2 ASTNENTPNTNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146 AG+ +L+ + L+ +G ++V DNGRGIP + H + S E+I+T LHAGGKF D++ Sbjct: 62 AGHCDLVLIELNPDGSVSVEDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205 Y++SGGLHGVG+SVVNALS+ L +T+ R +F+ G PL + K+GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLELTIWRDGKEHWMRFAHGDAEGPLVVRGPAPEGKKGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 R+TF+ + F + FD +L + A+L+ V+ + K + ++ Sbjct: 181 RVTFQASHETFKNVLEFDFDKLEHRYRELAFLNSGVRILLRDKRHEEIKEH-----DLFY 235 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILT 324 GG+ +++ N+ + E + G +EW ++ + + N I Sbjct: 236 EGGIAAFVKYLDRNKQPLMPEPVAISANRDGIGIDVALEWNDSY---YENVLCFTNNIPQ 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH + R ALTR + YAE + K +S+ DD+ I+SV + +P+F+ Q Sbjct: 293 RDGGTHLAAFRAALTRTLNGYAERSGMLKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQ 352 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS + ++ +E+ + D +L +NP A +++ VI+ + R ++ RE RK Sbjct: 353 TKDKLVSSEVRQPLESLMADKMVEWLEENPGHAKSIIQKVIDAAAAREAAKRARELTRRK 412 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV Sbjct: 413 GAMDIASLPGKLADCQERDPAKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVER 472 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 A ++I +++++ L+QA+G R ++ E LRY K++IMTDADVDGAHI +LLLTFF++ Sbjct: 473 ARFDRIISSKEVGTLIQAMGTGLRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHR 532 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609 +M ++I+ HLF+ PPL+++ +G VY D + L E G+ Sbjct: 533 QMPEIIKAGHLFIAQPPLYKVAKGRSEVYLKDNAAMDRYLVEAGLSGR 580 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++LE G+ + I R+KGLGEM A QL ET +D + R+LL+V++ T + Sbjct: 752 ELLEMVFAGGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRSLLQVKVED----ADVTDEI 807 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R FIQE A + ++ Sbjct: 808 FTRLMGDVVEPRRDFIQENALNVANLD 834 >gi|294085122|ref|YP_003551882.1| DNA gyrase,subunit B [Candidatus Puniceispirillum marinum IMCC1322] gi|292664697|gb|ADE39798.1| DNA gyrase, B subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 816 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 223/579 (38%), Positives = 331/579 (57%), Gaps = 15/579 (2%) Query: 28 EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAM 86 E + P A + +Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+ Sbjct: 5 EKTNIPDQAAAAVDGDYGAESIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 64 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ +L++V L+ +G ++V DNGRGIPV+ H + S E+I+T LHAGGKFDN+ Sbjct: 65 DEALAGHCDLVQVVLNADGSISVTDNGRGIPVDIHHE-EGVSAAEVIMTQLHAGGKFDNN 123 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 +Y++SGGLHGVG+SVVNALS+ L +T+ R F G L + GT Sbjct: 124 SYKVSGGLHGVGVSVVNALSEWLRLTIFRNGRKHEMMFKMGEADGALADMGDAEGQTGTH 183 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF P IF FD L + A+L+ V+ + ++ E+ F+F Sbjct: 184 VTFYPSLDIFSSI-EFDFTTLEHRLRELAFLNSGVRIKMTDNRTSEERVSE-----FFFE 237 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDE 326 GGL+ ++ +RS + I T + W ++ E + N I + Sbjct: 238 GGLEAFVTWLNRSRSEMHPTITAISQRDDITVELALAWTDSFHEN---TLCFTNNIPQRD 294 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GG H +G R A+TR + YA+ + K + + +D I+SV + +P+F+ QTK Sbjct: 295 GGAHLAGFRGAMTRVVNNYAQSSGIAKKEKVQLTGEDSREGLTAIVSVKVPDPKFSSQTK 354 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTA 443 KLVS + + VE A+ D + + ++P EA K++ + + R+ + RK Sbjct: 355 DKLVSSEVRPVVEQAVADCLNQWFEEHPAEAKKIVSKAYEAAAAREAARKARDLTRRKGV 414 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + +E+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNV A Sbjct: 415 MDIASLPGKLADCQERDPAKSEIFLVEGDSAGGSAKQGRDRANQAILPLRGKILNVERAR 474 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ ++ +I L+ A+G + + + +RY K++IMTDADVDG+HI +LLLTFF++ Sbjct: 475 LDKMLSSAEIGTLITAIGAGVGNTEMQLDKVRYHKIVIMTDADVDGSHIRTLLLTFFFRH 534 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 M LIEQ +L++ PPLFR +G VY D+ L Sbjct: 535 MRPLIEQGYLYIAQPPLFRAKRGQSEVYLKDQRELDIYL 573 Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Query: 608 GKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKA 667 G+ +ISR+KGLGEM QL ET +D ++RT L+V I + +D ++ + LMG Sbjct: 742 GRKGAQISRYKGLGEMNPDQLWETTLDPDQRTFLQVVIEHE----EDADNAFSTLMGEAV 797 Query: 668 DERFKFIQERASFIDDVG 685 +ER FIQ A + ++ Sbjct: 798 EERRNFIQTNALRVANLD 815 >gi|167044922|gb|ABZ09588.1| putative DNA gyrase B [uncultured marine microorganism HF4000_APKG8D23] Length = 646 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 233/652 (35%), Positives = 360/652 (55%), Gaps = 37/652 (5%) Query: 64 MYIGG-TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122 M++G D ALHH EV+DNA+DE +AGY + +EV+L+ NG +TV+D+GRGIPV P Sbjct: 1 MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60 Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182 + S E+I+T LHAGGKFDN Y+++GGLHGVG+S VNA+S++L +T+ R +++Q Sbjct: 61 E-EGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQ 119 Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 F RG + L+ K + T I F+PD KIF D FD ++ + A+L+ ++ Sbjct: 120 NFVRGKRKAVLKATGKTTSTG-TTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQ 178 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTH-RGT 301 + + + GGL+ Y+++ E + I E+ K G Sbjct: 179 IWLRDFRGQDTVEIEHK-----YDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVL 233 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI-IS 359 VE A+ W + I + N I +GG H SGL+ +LTR + YA+ + + +S Sbjct: 234 VEVALQWTDAYSESIHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVSSLSG 293 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 DD+ ++S+ +P F QTK KLV+ + VE + D Y +NP A ++ Sbjct: 294 DDVREGLSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIV 353 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 E V+ S+ R RK R++ R+ + LPG+LADC EL+IVEG+SAGGSA Sbjct: 354 EKVVLASKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSA 413 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSE--KIRNNQQIMDLVQALGCRTRSQ------YRE 530 K AR+R QAVLPLRGKILNV K+ +N+QI +++ALG ++ + Sbjct: 414 KTARDRRTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDP 473 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 E LRY K+IIMTDAD+DGAHI +L+LTF ++ M I ++++ +PPLF +++G + + Sbjct: 474 EKLRYGKIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEW 533 Query: 591 AHDEEHKQKILEEFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE----- 644 H E+ + +++ +K KI + R+KGLGEM QL +T MD RT+ +V+ Sbjct: 534 VHTEKDRDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKP 593 Query: 645 -----------INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 ++ + + + + LMG +R FI++ AS + + Sbjct: 594 SEVRFTDVGEQMSDEEAVEGEVNELFSILMGEDVPDRRAFIEKNASKVTALD 645 >gi|153007484|ref|YP_001368699.1| DNA gyrase subunit B [Ochrobactrum anthropi ATCC 49188] gi|151559372|gb|ABS12870.1| DNA gyrase, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 807 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 229/577 (39%), Positives = 341/577 (59%), Gaps = 18/577 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 N A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 2 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 L+ V+L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++SGGLH Sbjct: 62 LVTVALNPDGSCTVTDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS L + + R I F+ G+ +PL + GT ++F P P Sbjct: 121 GVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGTEVSFLPSPDT 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F FD L + + A+L+ V+ + + ++ GGL +++ Sbjct: 181 FS-MVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHE-----LHYDGGLVEFVKY 234 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +++ + E ++EK G TVE A+ W + ++ + N I +GGTH +G Sbjct: 235 IDQSKKSLLDEPIYIRSEKDG---MTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGF 291 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + YA+ + K +++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 292 RGALTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 351 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + VE+ + + +L ++P ++E VI+ + R RK R++ RK+ + LPGK Sbjct: 352 RPVVESLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDITRKSNLSVTSLPGK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV +++ ++ Q Sbjct: 412 LADCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQ 471 Query: 513 IMDLVQALGCRT----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + L+ ALG + + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE Sbjct: 472 VGTLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 + H+++ PPL+++++G S Y +E + L E Sbjct: 532 RGHIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETG 568 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PP+ R V +L+ G+ + + R+KGLGEM A QL ET + Sbjct: 704 FAEPPVLR---RKDKVETLSGP--MGLLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTL 758 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D N R+LL+V++ D ++LMG + R +FIQE A + ++ Sbjct: 759 DPNVRSLLQVKVTDAT----DADSLFSRLMGDDVEPRREFIQENALSVANLD 806 >gi|134301370|ref|YP_001121338.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. tularensis WY96-3418] gi|134049147|gb|ABO46218.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 627 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 242/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL K+E Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKIEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|222084213|ref|YP_002542739.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84] gi|221721661|gb|ACM24817.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84] Length = 811 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 237/574 (41%), Positives = 346/574 (60%), Gaps = 16/574 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE + G Sbjct: 5 SVTENDGNAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGG 64 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 YA+L+ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y++SG Sbjct: 65 YADLVTVTLNPDGSVTVTDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSG 123 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L + + RQ I F+ G+ +PL+ ++ GT ++F P Sbjct: 124 GLHGVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSFMPS 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F FD + L + A+L+ V+ + + + +EE + GGL+ + Sbjct: 184 SETFT-MTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVR-----QEEMLYDGGLEAF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ + + + + ++EK G TVE A+ W E E + N I +GGTH Sbjct: 238 VKYLDRAKKPLVDKPVSIRSEKDGI---TVEVAMWWNESYHENVLCFTNNIPQRDGGTHM 294 Query: 332 SGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR I Y E + + + DD +LSV + +P+F+ QTK KLVS Sbjct: 295 AGFRGALTRQITSYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + VE+ + + +L ++P +A L+ V+E + R RK RE RK A+ Sbjct: 355 SEVRPVVESLVNEALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIAS 414 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A +K+ Sbjct: 415 LPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M DLI Sbjct: 475 SSQEIGTLITALGTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPDLI 534 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 E+ HL++ PPL+++T+G Y DE+ ++ L Sbjct: 535 ERGHLYIAQPPLYKVTRGKSVQYVKDEKAFEEYL 568 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +LE G+ + + R+KGLGEM A QL ET +D N R+LL+V + D Sbjct: 729 LLETVFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNARSLLQVRVPDAT----DADGLF 784 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FIQ+ A + ++ Sbjct: 785 ARLMGDEVEPRREFIQDNALNVANLD 810 >gi|319778798|ref|YP_004129711.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9] gi|317108822|gb|ADU91568.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9] Length = 813 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 246/633 (38%), Positives = 365/633 (57%), Gaps = 32/633 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 + + +YDASSI++L+GLE VR RPGMYIG T D LHH+ EV+DN++DE +AGY Sbjct: 1 MTDSNQKPSYDASSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISG 152 + I V++ + ++V DNGRGIPVE H +S EI++T LHAGGKFD ++Y++SG Sbjct: 61 CDDIVVTIHSDNSISVADNGRGIPVEVHKDDEYGRSAAEIVMTELHAGGKFDQNSYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+S VNALS+ L +T+ R + F+RG+ + PL+ +KRGT++ + D Sbjct: 121 GLHGVGVSCVNALSEWLRLTIRRDGQVHEMSFNRGVKVEPLKVVGHT-DKRGTKVHYLAD 179 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 +IFG + K + ++L+ VK + E E F F GG+ + Sbjct: 180 TEIFGTI-DYSYEVFSKRLRELSFLNNGVKIRLVDELHEKE-------ENFEFSGGVTGF 231 Query: 273 LQTKLENRSLISSEIFTG-KTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTH 330 + +++ +I IF K+ G V+ A+ W + N ++ Y N I +GGTH Sbjct: 232 VSYINKSKQVIHPNIFHVSKSSSAGGVEVEVDVAMQWTDSINEQVLCYTNNIPQSDGGTH 291 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +GLR A+TR KY E T K + ++ +D+ +LSV + EP+F+ QTK KLV Sbjct: 292 LTGLRAAITRVFNKYIESTDLAKKAKVELVGEDMREGLSCVLSVKLPEPKFSSQTKDKLV 351 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKL 447 S + + VE + + + +L++NP +A + +IE + R RK RE RK + Sbjct: 352 SSEVRAPVEEVVAEGLETWLLENPNDARDICVKIIEAARAREASRKARELTKRKGILEGA 411 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADC + EL+IVEGDSAGGSAKQ RNR QA+LPLRGK+LNV + +++I Sbjct: 412 GLPGKLADCQEKDPAKCELYIVEGDSAGGSAKQGRNRKFQAILPLRGKVLNVEKSRADRI 471 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 + I L+ ALG + E LRY ++IIMTDADVDGAHI +LLLT FY++M L+ Sbjct: 472 FASDAIKTLITALGTSIDKDFNLEKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQMPKLV 531 Query: 568 EQKHLFLISPPLFRIT-QGTK-SVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGE--M 623 E+ H+++ PPL+++ +G+K Y D+ + + ++E G LG+ + Sbjct: 532 EEGHVYIAQPPLYKVRIKGSKVERYLKDDAEETEFMQELALKDAGID-------LGDRII 584 Query: 624 LASQLK---ETAMDANK--RTLLRVEINKDLNS 651 +LK T M A+K R L R+ L + Sbjct: 585 EGDELKSYLSTYMSADKVIRRLSRIMDESTLQA 617 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 18/126 (14%) Query: 563 MYDLIEQKHLFLISPPLFRITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 LI+ ++ +G + YA + +++++ + ++ R+KG Sbjct: 702 FRGLIKDG---------AKVFRGEATKRMEYAVSD--FKQVVDWLFEQASKSVDKQRYKG 750 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERAS 679 LGEM QL ET MD + R LL+V+I + + LMG + + R +FI+E A Sbjct: 751 LGEMNPDQLWETTMDPSVRRLLQVQIEDAI----AADQIFDMLMGDRVEPRREFIEENAL 806 Query: 680 FIDDVG 685 + D+ Sbjct: 807 TVSDLD 812 >gi|312958106|ref|ZP_07772629.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens WH6] gi|311287537|gb|EFQ66095.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens WH6] Length = 805 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 225/569 (39%), Positives = 342/569 (60%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +TV R I+ Q + G+P P++ GT+I F+P F Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGD-SETTGTQIHFKPSADTFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D++ ++ + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEEYM 557 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ L+ + I R+KGLGEM QL ET MD +R +LRV I + Sbjct: 718 KEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIG---- 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 774 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|15963765|ref|NP_384118.1| DNA gyrase subunit B [Sinorhizobium meliloti 1021] gi|307302568|ref|ZP_07582325.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C] gi|307316101|ref|ZP_07595545.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83] gi|15072940|emb|CAC41399.1| Probable DNA gyrase subunit B [Sinorhizobium meliloti 1021] gi|306897941|gb|EFN28683.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83] gi|306903238|gb|EFN33828.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C] Length = 811 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 236/574 (41%), Positives = 343/574 (59%), Gaps = 16/574 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 5 SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+++ V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y++SG Sbjct: 65 HADIVTVTLNPDGSVTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L + + R I F+ G+ PL+ + GT +TF P Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTFTPS 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F + F+ L + A+L+ V+ + + + EE + GGL+ + Sbjct: 184 EQTFSNI-EFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EEMMYDGGLEAF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 + + + + + + EK G TVE A+ W + E + N I +GGTH Sbjct: 238 VAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHM 294 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR I YA+ + K +S+ DD +LSV + +P+F+ QTK KLVS Sbjct: 295 AGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + VE+ + + +L ++P +A L+ V+E + R RK RE RK A+ Sbjct: 355 SEVRPVVESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A +K+ Sbjct: 415 LPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LI Sbjct: 475 SSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELI 534 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 E+ HL++ PPL+++ +G Y DE+ + L Sbjct: 535 ERGHLYIAQPPLYKVARGKSVQYLKDEKALEDYL 568 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%) Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PP+ R GT+ + + +L+ G+ + + R+KGLGEM A QL ET Sbjct: 707 VYGA-PPVLRRRDGTQEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +D N R+LL+V++ D ++LMG + + R FIQE A + ++ Sbjct: 761 TLDPNVRSLLQVKVTDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810 >gi|241667848|ref|ZP_04755426.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876390|ref|ZP_05249100.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842411|gb|EET20825.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 627 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 244/643 (37%), Positives = 359/643 (55%), Gaps = 21/643 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E++DN++DEV+AGYA+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIVDNSVDEVLAGYASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YDDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS +L + R ++ F G+ LE + V + GT+I F P+ K F D Sbjct: 118 VNALSSKLEAEIKRDGNVYQITFEDGLKTKDLEIIDSVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + E+ ++F GLK YL KLE Sbjct: 177 KVNVKALKNLLEAKAILCKALTIKYSNEIK-------KERISWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPLEPFMIDNFSNGDSYLDAV-FCWCEDPLESIKNSYVNLIPTPQDGTHVTGLKNGVYE 288 Query: 341 GIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + + I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKTYIEKNSLGIKNVKITANDSFAKLNYVISVKITNPQFAGQTKEKLSNKDVTSFVTTA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIIENINSIAQKRI-NADKKTTRKRIMNTSIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q++ ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEVHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SGLRYNKICILADADSDGLHIATLLCAMFLKHFRKLIEYGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE K+KIL E K GKI I RFKGLGEM QL+E+AMD + R Sbjct: 527 FRIDIGKNTFYALDENEKEKILAENTKL-TGKINIMRFKGLGEMNPIQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 LL++ I+ + + L +A +R +++ + Sbjct: 586 LLQLTISNTYDDAEILDML---LAKKRAKDRRDWLENHGDKAE 625 >gi|119896295|ref|YP_931508.1| DNA gyrase subunit B [Azoarcus sp. BH72] gi|119668708|emb|CAL92621.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72] Length = 829 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 232/604 (38%), Positives = 347/604 (57%), Gaps = 35/604 (5%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEV 89 P + ++YD SSI+ LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE Sbjct: 2 SEPQNTPAPSGNDYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 61 Query: 90 IAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNS 146 +AG+ + I +++ + ++V DNGRGIPV P +S EI++ LHAGGKF+ + Sbjct: 62 LAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQN 121 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194 +Y++SGGLHGVG+S VNALS L +T+ R +F RG P +SPL+ Sbjct: 122 SYKVSGGLHGVGVSCVNALSKWLRLTIRRDGKKHFMEFHRGAPQDRVIDVVDGVEVSPLK 181 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 + RGT + + D +IFG + L K + ++L+ VK + Sbjct: 182 VLGETSK-RGTEVHYLADEEIFGTV-EYHYEILAKRLRELSFLNNGVKIRLVDQR----- 234 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKK-----GTHRGTVEWAIAWC 309 ++E+F F GG++ +++ ++++ +F + G +VE A+ W Sbjct: 235 --TGKEEDFAFAGGVRGFVEYINRTKAVLHPSVFYAAGTTRIPTGAGEAELSVEVAMQWN 292 Query: 310 EEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISA 366 + ++ Y N I +GGTH +GLR A+TR I KY E + K + I DD+ Sbjct: 293 DSYAEQVLCYTNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDITGDDMREGL 352 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 +LSV + +P+FA QTK KLVS +A+ VE + +L++NPI+A + ++E + Sbjct: 353 ACVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVAAKLTDFLLENPIDAKTICNKIVEAA 412 Query: 427 EERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRS 485 R RK RE+ R+ + + LPGKLADC + +EL++VEGDSAGGSAKQ R+R Sbjct: 413 RARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRK 472 Query: 486 NQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDA 544 QA+LPL+GKILNV A +K+ +Q+I L+ ALG + Y+ E LRY ++I+MTDA Sbjct: 473 FQAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDA 532 Query: 545 DVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 DVDGAHI +LLLTFFY++M +L+E+ H+++ PPL++I G +Y D+ L + Sbjct: 533 DVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKL 592 Query: 605 KKHG 608 G Sbjct: 593 ALDG 596 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + + + R+KGLGEM QL ET MD R LL Sbjct: 732 IRRGEKRQ---TVTRFADAITWLLAEVERGLSKQRYKGLGEMNPEQLWETTMDPAVRRLL 788 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV+I+ + + LMG + R FI+ A + ++ Sbjct: 789 RVQIDDAI----AADEIFTTLMGDNVEPRRAFIESNALYAQNID 828 >gi|78355050|ref|YP_386499.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217455|gb|ABB36804.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 797 Score = 502 bits (1292), Expect = e-139, Method: Composition-based stats. Identities = 230/574 (40%), Positives = 336/574 (58%), Gaps = 19/574 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 N++ +YDA++I +LEGL VRMRP MYIG TD + LHHL EV+DN++DE +AGY Sbjct: 1 MTNETQKQSYDAANITVLEGLSAVRMRPAMYIGSTDSRGLHHLVYEVVDNSIDEAMAGYC 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + + V L + +TV+DNGRGIPV+ HPK + +E+++T LHAGGKFDN +Y++SGGL Sbjct: 61 DKVTVKLHLDNSVTVIDNGRGIPVDIHPK-EGRPAVEVVMTVLHAGGKFDNDSYKVSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S VNALS+ L VTV R + +F RG+P+ LE+ + + RGT I FRPD + Sbjct: 120 HGVGVSCVNALSEYLEVTVRRDGYKYHHRFERGVPVKELERVGET-DLRGTTIRFRPDEE 178 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 IF F L K + AYL+ ++ + ++ + F++ GG++ +++ Sbjct: 179 IFET-NQFSFDILKKRFEELAYLNPGLEVEFIDER-------TGDTASFHYEGGIREFVK 230 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + S E V++A+ + + ++ N I T EGGTH +G Sbjct: 231 NLNSGEGGVHSI-IFASGESDNVM---VDFALQYNAGYKENMLTFANNIRTKEGGTHLAG 286 Query: 334 LRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 + ALTR I Y + + + + + DD+ G++SV + P+F GQTKTKL + + Sbjct: 287 FKTALTRAINNYIQNSDLPKKLKVKLSGDDVREGLTGVVSVKLPNPQFEGQTKTKLGNSE 346 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 V + + + Y +NP +A ++E ++ + R RK ++ V RK A+ LP Sbjct: 347 VAGIVSGLVYENLNTYFGENPKDAKLIIEKAVDAARARDAARKAKDLVRRKGALSDNALP 406 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC +ELFIVEGDSAGGSAKQ RN S QA+LPLRGKILNV +K+ N Sbjct: 407 GKLADCQSKDPSESELFIVEGDSAGGSAKQGRNPSTQAILPLRGKILNVEKTRFDKMLAN 466 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +++ L+ A+G LRY K++IMTDADVDGAHI +LLLTFFY++ +LI++ Sbjct: 467 KEVKALITAMGAGIGEEDIDYGKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQYPELIDR 526 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 HL++ PPLFR+ + DE L E Sbjct: 527 GHLYIAQPPLFRVYNSKFERFIKDETELNTYLLE 560 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +L+ + + I I R+KGLGEM A QL T M+ R LL+V+++ ++ + Sbjct: 715 LLDHVLQEARKGINIQRYKGLGEMDAEQLWVTTMNPENRVLLQVQVDD----AEEANEIF 770 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 +LMG + + R +FI A + ++ Sbjct: 771 EQLMGDRVEPRREFIVRNALSVQELD 796 >gi|16124415|ref|NP_418979.1| DNA gyrase subunit B [Caulobacter crescentus CB15] gi|239977278|sp|B8GXQ0|GYRB_CAUCN RecName: Full=DNA gyrase subunit B gi|239977279|sp|P0CAX1|GYRB_CAUCR RecName: Full=DNA gyrase subunit B gi|13421273|gb|AAK22147.1| DNA gyrase subunit B [Caulobacter crescentus CB15] gi|220962270|gb|ACL93626.1| DNA gyrase subunit B [Caulobacter crescentus NA1000] Length = 805 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 230/590 (38%), Positives = 344/590 (58%), Gaps = 26/590 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A ++V L+ +G +TV D+GRGIPV+ H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 61 ATKVQVILNADGSVTVTDDGRGIPVDMH-EGEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV----------RNKR 203 LHGVG+SVVNALSD L + + R + +F RG ++ L+ Sbjct: 120 LHGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLT 179 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT +TF P F FD L + A+L+ V + +++ P +E+ Sbjct: 180 GTEVTFFPSKDTFA-FIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDV-----EPWEEKL 233 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322 ++ GG++ +++ + ++ + K K ++ A+ W + ++ + N I Sbjct: 234 FYEGGIEAFVRHLDKAKTPLLKAPIAVKGVKDKV---EIDLALWWNDSYHEQMLCFTNNI 290 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380 +GGTH S R ALTR I YAE + K +S+ +D +LSV + +P+F+ Sbjct: 291 PQRDGGTHLSAFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFS 350 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 QTK KLVS + + VE + + + ++P EA ++ + E + R RK RE Sbjct: 351 SQTKDKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTR 410 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RK+A+ LPGKLADCS+ +E+FIVEGDSAGGSAKQARNR NQAVLPLRGKILNV Sbjct: 411 RKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNV 470 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 A +K+ ++ QI L+ ALG R + + +RY K+++MTDADVDGAHI +LLLTF Sbjct: 471 ERARFDKMLSSDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTF 530 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 FY++M +LIE+ ++++ PPL++ ++G S Y D+ L + G Sbjct: 531 FYRQMPELIERGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDG 580 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ G+ + I R+KGLGEM QL ET +DA RTLL+V +N D D Sbjct: 723 DLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNH----ADDADDM 778 Query: 659 INKLMGTKADERFKFIQERASFID 682 ++LMG + R +FIQE A + Sbjct: 779 FSRLMGDLVEPRREFIQENALDAE 802 >gi|85711018|ref|ZP_01042079.1| DNA gyrase subunit B [Idiomarina baltica OS145] gi|85695422|gb|EAQ33359.1| DNA gyrase subunit B [Idiomarina baltica OS145] Length = 806 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 221/573 (38%), Positives = 348/573 (60%), Gaps = 17/573 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +NY +SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ ++V Sbjct: 4 NNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTGVDVR 63 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +G ++V D+GRGIPV+ H + S ++I+T LHAGGKFD+++Y++SGGLHGVG+S Sbjct: 64 IHSDGSVSVRDDGRGIPVDLHEE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 122 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD+L +T+ RQ ++ Q + G P + +++ ++ GT + F P IF D Sbjct: 123 VVNALSDKLKLTIRRQGHVYEQTYHLGEPETDVQQIGDT-DQTGTELRFWPSASIFSDT- 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + ++L+ V S +++ K+EF + GG+ ++ + + Sbjct: 181 EFHYDILAKRLRELSFLNSGVAIRLSDERD-------DRKDEFKYEGGISAFVTYLNKAK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I F +E++ +VE ++ W + I Y N I +GGTH +G R ALT Sbjct: 234 TPIHPNPFHFTSERE-EDGISVEVSMQWNDSFQENIYCYTNNIPQRDGGTHLAGFRAALT 292 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R + Y E K + DD ++SV + +P+F+ QTK KLVS + + VE Sbjct: 293 RTLNSYMEKEGFTKKTKTAATGDDAREGLTAVISVKVPDPKFSSQTKEKLVSSEVKSAVE 352 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADC 456 A+ + +L++NP ++ ++ +++ + R RK R RK A+ LPGKLADC Sbjct: 353 QAMNERLADFLLENPQDSKLIVNKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADC 412 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ L Sbjct: 413 QEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTL 472 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + A+GC R +Y + RY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 473 ITAMGCGIGRDEYDPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIA 532 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y D+ + L Sbjct: 533 QPPLYKVKKGKQETYIKDDPALIRYLTSLALDN 565 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 +T+G K H + +E K + + R+KGLGEM QL ET MD R +L Sbjct: 709 VTRGEKRQ---PVSHFVEAVEWLISESKRGLYVQRYKGLGEMNPEQLWETTMDPETRRML 765 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+ A + ++ Sbjct: 766 QVTIEDAIG----ADQLFSTLMGDDVEPRRNFIESNALKVANLD 805 >gi|222110142|ref|YP_002552406.1| DNA topoisomerase iv subunit b [Acidovorax ebreus TPSY] gi|221729586|gb|ACM32406.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax ebreus TPSY] Length = 660 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 237/670 (35%), Positives = 345/670 (51%), Gaps = 38/670 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 +++ +Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG+ Sbjct: 4 KPASTSASDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAGFG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYEIS 151 I+V+L +G ++V D+GRGIP HP+ N +E++ T LHA K Y S Sbjct: 61 KKIKVTLHTDGSVSVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKGKGGAYSFS 119 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE--KVRNKRGTRITF 209 GGLHGVG+SV NAL+ L V R+ + F+ G PL + K+GT + Sbjct: 120 GGLHGVGVSVTNALATRLEVATHREGQVARLVFAGGDVTEPLAARPLQAGERKQGTTVRV 179 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 PD K F L + +SKA L V +K + + + GGL Sbjct: 180 WPDAKYFESSN-LPMGELTHLLRSKAVLMPGVTVQLVNEKTRD-------TQTWQYKGGL 231 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTILTD 325 + YL L +I G ++ E A E P SY N I T Sbjct: 232 RDYLAQTLSADPVIPLFEGEGFADRHNESFAEGEGAAWCVAFTEEGQPVRESYVNLIPTS 291 Query: 326 EGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTHESGLR L +K + E + + + ++ +D+ A +L+ + +P+F GQ K Sbjct: 292 AGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDVFARASYVLAAKVLDPQFQGQIK 351 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI 444 +L S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + + Sbjct: 352 ERLNSRDAVRLVSSFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKRKGSGV 411 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 L PGKL DC E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN Sbjct: 412 AVL--PGKLTDCESRDLAYNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVDR 469 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ N ++ D+ A+G D LRY K+ I++DADVDG+HI LLLT F++ Sbjct: 470 DRLFANTEVHDISVAIGVDPHGPSDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFR 529 Query: 562 EMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIE 613 LIE H+F+ PPLFR+ +G K VYA DE + IL++ K G + K + Sbjct: 530 HFPKLIEAGHIFVARPPLFRVDVPARGKKPAAKVYALDESELESILDKCAKDGVPREKCQ 589 Query: 614 ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFK 672 ISRFKGLGEM A QL ET ++ + R LL V++ T+ I KLMG +A R + Sbjct: 590 ISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GTFDFSATEGLITKLMGKGEAAARRE 647 Query: 673 FIQERASFID 682 ++ +D Sbjct: 648 LMELHGDLVD 657 >gi|148261868|ref|YP_001235995.1| DNA gyrase, B subunit [Acidiphilium cryptum JF-5] gi|326405373|ref|YP_004285455.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301] gi|146403549|gb|ABQ32076.1| DNA gyrase subunit B [Acidiphilium cryptum JF-5] gi|325052235|dbj|BAJ82573.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301] Length = 812 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 228/591 (38%), Positives = 347/591 (58%), Gaps = 19/591 (3%) Query: 24 KKSGEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSE 80 + + PA + +A+ + YDA+SI +L GL+ VR RPGMYIG TD+ LHH+ E Sbjct: 2 TSTADSTAVPASEDPAAAPDGVYDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMGFE 61 Query: 81 VIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAG 140 +IDNA+DE AG+A+ ++V L+G+G +TV DNGRGIP + HP+ S E++LT LHAG Sbjct: 62 IIDNAVDEAQAGFADRVDVVLNGDGSMTVTDNGRGIPTDIHPE-EGISAAEVVLTRLHAG 120 Query: 141 GKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 GKF+ ++Y++SGGLHGVG +VVNALS+ + V + R +F G ++PL Sbjct: 121 GKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASE 180 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 + GT +TFRP F FD A + + A+L+ + ++ A ++ Sbjct: 181 HGTGTSVTFRPSAATFTR-TEFDFAIYERRLRELAFLNSGLTINLRDERHSAV-----QE 234 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F + GGL ++ ++ + S T + VE+A+AW + + + Sbjct: 235 AHFRYEGGLVEFVSWLDRAKTQLFSPPVTA-FKDDAPGGIKVEFALAWNDTYHETMLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEF 379 N I+ +GGTH +G R ALTR + KYAE K ++S+ +D+ +LSV + +P+F Sbjct: 294 NNIVQRDGGTHLAGFRSALTRVVSKYAESLGKKDSLSLSGEDMREGLTAVLSVKVPDPKF 353 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439 + QTK KLVS + Q V+ A+ D +H+ +P E + + V++ + R RK RE+ Sbjct: 354 SSQTKDKLVSSEVQPLVQAAVADALEHWFETHPKEGRLIAQKVMDAASAREAARKARELT 413 Query: 440 RKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 R+ + LPGKLADC + +E+FIVEGDSAGGSAKQ R+R QA+LPL+GKILN Sbjct: 414 RRKGVLDISTLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRKTQAILPLKGKILN 473 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQ------YREEDLRYEKVIIMTDADVDGAHIA 552 V A +++ + +I L+ ALG + LRY +++IMTDADVDG+HI Sbjct: 474 VERARFDRMLGSAEIGTLITALGTGIGPAEPEQGGFDISKLRYHRIVIMTDADVDGSHIR 533 Query: 553 SLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 +LLLTFF+++M +LIE+ HL++ PPL+R+ +G + Y D++ + L E Sbjct: 534 TLLLTFFFRQMRELIERGHLYIAQPPLYRVKRGNEERYLKDDDAMEAYLFE 584 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++E G+ + I RFKGLGEM QL +T +D R LL+V I +D+ Sbjct: 729 SLIETLFGIGRKGLSIQRFKGLGEMNPDQLWQTTLDPTTRRLLQVRIGD----AEDSDQI 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FI A + ++ Sbjct: 785 FSTLMGDVVEPRREFIVGNALKVANLD 811 >gi|222147027|ref|YP_002547984.1| DNA gyrase subunit B [Agrobacterium vitis S4] gi|221734017|gb|ACM34980.1| DNA gyrase subunit B [Agrobacterium vitis S4] Length = 811 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 232/575 (40%), Positives = 343/575 (59%), Gaps = 16/575 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 +AS Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 4 TTDEANAASTAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+++ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y++S Sbjct: 64 GHADIVTVTLNADGSVTVTDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVS 122 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS +L + + R + F+ G+ +PL + + GT ITF P Sbjct: 123 GGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITFLP 182 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 + F FD L + A+L+ V+ + ++ + +EE + GGL+ Sbjct: 183 STETFTQV-EFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIR-----QEEMLYDGGLEA 236 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330 +++ ++ + S + EK G TVE A+ W + E + N I +GGTH Sbjct: 237 FVRYLDRSKKPLVSNPVAIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTH 293 Query: 331 ESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR I YA+ + K +++ +D +LSV + +P+F+ QTK KLV Sbjct: 294 MAGFRGALTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDKLV 353 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447 S + + VE+ + + + ++P EA L+ + V R+ + RK A+ Sbjct: 354 SSEVRPVVESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIA 413 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFDKM 473 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 IE+ HL++ PPL+++T+G Y DE+ ++ L Sbjct: 534 IERGHLYIAQPPLYKVTRGKSIQYLKDEKALEEYL 568 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 9/110 (8%) Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PP+ G +++ + +L+ G+ + + R+KGLGEM A QL ET +D Sbjct: 710 QPPVLTRKDGQQTISG-----PRNLLDAVFSFGRKGLSMQRYKGLGEMNAEQLWETTLDP 764 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 N R+LL+V +N D ++LMG + + R FIQE A + ++ Sbjct: 765 NVRSLLQVRVNDAT----DADSLFSRLMGDEVEPRRDFIQENALNVANLD 810 >gi|221135258|ref|ZP_03561561.1| DNA gyrase subunit B [Glaciecola sp. HTCC2999] Length = 808 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 224/583 (38%), Positives = 349/583 (59%), Gaps = 20/583 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SEENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++ + +G + V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KIKIHTDGSVAVSDDGRGIPTEIHAE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS +L + + R + Q++ G+P +PL + GT I F P F Sbjct: 121 GVSVVNALSHKLRLRIKRLGKVHEQEYIHGVPSAPLAVVGDTSS-TGTEIRFWPSEDTFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V +++ +++ F + GG++ +++ Sbjct: 180 NI-EFHYDVLAKRLRELSFLNSGVSIILEDERD-------GKRDHFKYEGGIQAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 +N++ + + F E++ +VE ++ W + I + N I +GGTH +G R Sbjct: 232 QNKTPVHQKPFQFNVERED--GISVEVSMQWNDSFQENIFCFTNNIPQRDGGTHLAGFRS 289 Query: 337 ALTRGIKKYA----ELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ALTR + + +NK A + DD ++SV + +P+F+ QTK KLVS + Sbjct: 290 ALTRTLNTFMEKEGFNKKNKNATNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEV 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE+A+ + +L++NP +A ++ +I+ + R RK R RK A+ LPG Sbjct: 350 KSAVESAMGESLTEFLLENPADAKVIVGKIIDAARAREAARKAREMTRRKGALDLAGLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q Sbjct: 410 KLADCQEKDPAFSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQ 469 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y E LRY +IIMTDADVDG+HI +LLLTFFY++M ++IE+ Sbjct: 470 EVATLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERG 529 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 ++++ PPL++I +G + Y D++ L Sbjct: 530 YVYIAQPPLYKIKKGKQEQYLKDDDALNAYLTSIAVDNSSLYT 572 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 E ++ LE K I R+KGLGEM QL ET MD N R +L+V+I + Sbjct: 719 TVESFKEALEWLMHEAKRGQYIQRYKGLGEMNPDQLWETTMDPNSRRMLQVKIEDAIG-- 776 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++++ Sbjct: 777 --ADQLFTTLMGDQVEPRRNFIEANALNVENLD 807 >gi|320531398|ref|ZP_08032366.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral taxon 171 str. F0337] gi|320136399|gb|EFW28379.1| DNA gyrase, B subunit, carboxyl terminus [Actinomyces sp. oral taxon 171 str. F0337] Length = 750 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 230/745 (30%), Positives = 346/745 (46%), Gaps = 97/745 (13%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P+ N+++ +Y A + +LEGLE VR RPGMYIG TD++ L H E++DNA+DE + G Sbjct: 2 PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + I V++ +G + V DNGRG+PV+ P + +E++ T LHAGGKF +Y +G Sbjct: 62 HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------- 199 GLHGVG SVVNAL++ + V V R ++ F RG P + + Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSLFTEFTKASE 180 Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249 R GTR+ + DP+IF +DAA L + ++L + + Sbjct: 181 LRVVGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240 Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271 ++ + E F GG Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNTTENRGDLFDTGTDDGVEVFQALGGTAD 300 Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314 ++ + S+ + TG+ + V+ A+ W Sbjct: 301 FVDFLASDGSVTDTFRLTGEGSYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360 Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368 S+ N I T GGTH +G ALT+ ++K E + + DD+M Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTSKDGRVEKDDIMAGLTA 420 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF----DHYLVQNPIEATKLLEWVIE 424 +++V + EP+F GQTK L + ++ V + +A L E ++ Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLSSSKRDLKTQARALEEKIVG 480 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 R+ R +E RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR+ Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV A + N + ++Q +G + + E RY KVI+MTD Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597 ADVDGAHI +LLLT F++ M +IE +F PPL RI + + +Y + +E Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 L ++ G+ E R+KGLGEM A QL ET M+ RTL R+ + + + + + Sbjct: 661 VTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLEDEAQVM-EAES 719 Query: 658 SINKLMGTKADERFKFIQERASFID 682 LMG+ + R FI E A +D Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744 >gi|296932705|gb|ADH93506.1| DNA gyrase subunit B [Pseudomonas sp. In5] Length = 807 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 224/571 (39%), Positives = 345/571 (60%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 ++ ++ YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + Sbjct: 2 SEENTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 62 DISIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALS+EL +TV R I+ Q + G+P P++ + GT+I F+P Sbjct: 121 GVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGE-SETTGTQIHFKPSDLT 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 FKNIH-FSWDILAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ ++ + G VE A+ W + + + N I +GGTH G Sbjct: 232 LNTNKTPVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGF 288 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + Sbjct: 289 RSALTRNLNTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPG Sbjct: 349 KTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q Sbjct: 409 KLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQ 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ Sbjct: 469 EVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++++ PPL+++ +G + Y D++ ++ + Sbjct: 529 YIYIAQPPLYKVKKGKQEQYIKDDDAMEEYM 559 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ LE + I R+KGLGEM QL ET MD +R +L+V I + Sbjct: 721 EFKEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLKVTIEDAIG----A 776 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806 >gi|121601805|ref|YP_989593.1| DNA gyrase subunit B [Bartonella bacilliformis KC583] gi|120613982|gb|ABM44583.1| DNA gyrase, B subunit [Bartonella bacilliformis KC583] Length = 809 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 235/572 (41%), Positives = 340/572 (59%), Gaps = 16/572 (2%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 S +Y A+SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA Sbjct: 5 TTSPTSGDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 L+ V+L +G +V DNGRGIP + HP + S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 65 TLVNVTLHADGSCSVCDNGRGIPTDIHP-TEHVSAAEVIMTQLHAGGKFDQNSYKVSGGL 123 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS L + + R I F+ G+ +PL+ + + GT I+F P P+ Sbjct: 124 HGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADAPLKVVGQCGTESGTEISFLPSPE 183 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F FD L + + A+L+ V + Y+ GGL +++ Sbjct: 184 TFT-MVKFDFETLERRLRELAFLNSGVHILLVNQHHADVRSVE-----LYYEGGLIEFIK 237 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 +++ + +EK G +V+ A+ W + ++ + N I +GGTH +G Sbjct: 238 YIDQSKKPLIDAPIYITSEKDGI---SVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAG 294 Query: 334 LRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR I YAE + K +++ DD ILSV + +P+F+ QTK KLVS + Sbjct: 295 FRSALTRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSE 354 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + +L ++P EA L+ V+E + R RK RE RK A+ LP Sbjct: 355 VRPIVENLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLP 414 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ ++ Sbjct: 415 GKLADCQERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSS 474 Query: 511 QQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 + I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ Sbjct: 475 EMIGTLITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIER 534 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 HL++ PPL+++++G S Y +E + L Sbjct: 535 GHLYIAQPPLYKVSRGKSSQYIKNEAAFEDFL 566 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 9/109 (8%) Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PPL R ++ ++ +LE +GK I + R+KGLGEM A QL ET +D + Sbjct: 709 PPLLRRKDKSERIFGPT-----SLLESIFINGKKGITLQRYKGLGEMNADQLWETTLDPD 763 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R+LL+V+IN D ++LMG + + R FIQ+ A + ++ Sbjct: 764 ARSLLQVKINDAT----DADSLFSQLMGDEVEPRRIFIQKNALNVANLD 808 >gi|70733517|ref|YP_257156.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf-5] gi|68347816|gb|AAY95422.1| DNA gyrase, B subunit [Pseudomonas fluorescens Pf-5] Length = 805 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 224/569 (39%), Positives = 341/569 (59%), Gaps = 19/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD++SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + + +TV DNGRGIPV+ H K S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 SIIIHPDESITVRDNGRGIPVDVH-KEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +TV R I+ Q + G+P ++ GT+I F+P + F Sbjct: 121 GVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGD-SETTGTQIHFKPSAETFK 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V ++ E E F + GGL+ +++ Sbjct: 180 NIH-FSWDVLAKRIRELSFLNSGVGIVLKDERSGKE-------ELFKYEGGLRAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + G VE A+ W + + + N I +GGTH G R Sbjct: 232 TNKTAVNQVFHFNIQREDGI---GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRS 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKT 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + F +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 349 AVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC R +Y + LRY +IIMTDADVDG+HI +LLLTFF++++ +LIE+ ++ Sbjct: 469 GTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+++ +G + Y D++ + + Sbjct: 529 YIAQPPLYKVKKGKQEQYIKDDDAMEDYM 557 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ + I R+KGLGEM QL ET MD + R +L+V I + Sbjct: 719 EFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSMRRMLKVTIEDAIG----A 774 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 N LMG + R FI+ A + ++ Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|332188898|ref|ZP_08390603.1| DNA gyrase, B subunit [Sphingomonas sp. S17] gi|332011080|gb|EGI53180.1| DNA gyrase, B subunit [Sphingomonas sp. S17] Length = 830 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 225/582 (38%), Positives = 348/582 (59%), Gaps = 21/582 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A+ ++ Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AG+ Sbjct: 1 MADTPQTNEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYE 149 + I++ L+ +G ++V DNGRGIP HP+ S E+I+T LHAGGKF D++ Y+ Sbjct: 61 CDRIDIQLNADGSVSVTDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFENTSDDNAYK 119 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRIT 208 +SGGLHGVG+SVVNALS+ L +T+ R +F+ G ++PL+ K ++GTR+T Sbjct: 120 VSGGLHGVGVSVVNALSEFLDLTIWRDGEEHYMRFAHGDAVAPLKVVGKAAPGQKGTRVT 179 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 F P P F FD +L + A+L+ V+ + + + P+ E Y+ GG Sbjct: 180 FLPSPATFK-ITEFDFDKLEHRYRELAFLNSGVRLFLTDAR-----HEEPKTVELYYEGG 233 Query: 269 LKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTDEG 327 + +++ ++S + E ++ +EW ++ + ++ N I +G Sbjct: 234 IAAFVKWLDRSKSPLFPEPIAIHGQRDAIGMDVALEWNDSY---YENVLAFTNNIPQRDG 290 Query: 328 GTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKT 385 GTH + R ALTR + YA+ + K +++ DD+ I+SV + +P+F+ QTK Sbjct: 291 GTHIAAFRAALTRTLNNYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKD 350 Query: 386 KLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-I 444 KLVS + ++ +E+ + D +L +NP A ++ +I+ + R ++ RE+ R+ + Sbjct: 351 KLVSSEVRQPLESLIADKLADWLEENPQNARAIVGKIIDAAAAREAAKRARELTRRKGVM 410 Query: 445 RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGS 504 LPGKLADC + +ELF+VEGDSAGGSAKQ RNR QA+LPLRGKILN A Sbjct: 411 DIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHFQAILPLRGKILNTERARF 470 Query: 505 EKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 +++ ++++I L+QA+G + LRY K++IMTDADVDGAHI +LLLTFFY++M Sbjct: 471 DRMISSKEIGTLIQAMGTGIGRDDFNADKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQM 530 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 +LIE+ HL++ PPL++ T+G VY D+ + L E Sbjct: 531 PELIERGHLYIAQPPLYKATKGRSEVYLKDDTALDEYLVEAG 572 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++LE G+ + I R+KGLGEM A QL ET +D R++LRV + + + Sbjct: 747 QLLEAILTSGRKGLAIQRYKGLGEMNAEQLWETTLDPAVRSMLRVT----SDDVAAADEV 802 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + R +FIQ+ A + ++ Sbjct: 803 FSRLMGEVVEPRREFIQDNALNVANLD 829 >gi|148651822|ref|YP_001278915.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1] gi|148570906|gb|ABQ92965.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1] Length = 884 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 224/584 (38%), Positives = 352/584 (60%), Gaps = 22/584 (3%) Query: 24 KKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVI 82 + + D PA A + Y + +IR+L GLE VR+RPGMYIG TD+ LHH+ EV+ Sbjct: 17 PEGVDATDLPAGAEP---EEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVV 73 Query: 83 DNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGK 142 DN++DE +AG+ + I++ + + ++V+DNGRGIP++ HP+ S ++I+T LHAGGK Sbjct: 74 DNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGIPIDVHPE-EGVSAAQVIMTVLHAGGK 132 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK 202 FD+++Y++SGGLHGVG+SVVNALS +L + + R+ + Q +S G+P S +++ EK Sbjct: 133 FDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGHHYQQTYSDGVPDSDIQELEKTNK- 191 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT+I F P P++F FD L K + ++L+ V+ + ++ ++ Sbjct: 192 TGTQIRFYPSPEVFTGTV-FDFDILAKRLRELSFLNSGVRIVLTDER-------TDKQHV 243 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNT 321 F GGL ++ + ++ ++ G VE A+ W + ++ + N Sbjct: 244 FEHKGGLSEFVAYINSGKEGLNDVFHFVSEQEDGI---VVEAALQWTDTYNEKVLCFTNN 300 Query: 322 ILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEF 379 I +GGTH SG R ALTR + Y + + K ++ DD I+SV + +P+F Sbjct: 301 IPQKDGGTHLSGFRSALTRCLNSYMDNEKLVKKEKVNTTGDDAREGLTAIVSVKVPDPKF 360 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REV 438 + QTK KLVS + + VE+A+ D F+ YL+++P A + +I+ + R RK Sbjct: 361 SSQTKDKLVSSEVKSAVESAMHDKFNDYLLEHPGAAKSIANKIIDAARARDAARKARELT 420 Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498 RKT + LPGKLADC + +EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILN Sbjct: 421 RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN 480 Query: 499 VASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLT 557 V A +K+ ++ ++ L+ ALGC +Y + +RY K+IIMTDADVDG+HI +LLLT Sbjct: 481 VERARFDKMLSSAEVGTLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT 540 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 FF+++ +LIE+ ++++ PPL++I +G + +Y D+E + L Sbjct: 541 FFFRQTPELIERGYVYIAQPPLYKIKKGRQELYLKDDEALKAYL 584 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + ++ + + + + R+KGLGEM A QL +T MD R +L+V I + Sbjct: 799 FDHLWQQVMQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAI----AAD 854 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI+E A + ++ Sbjct: 855 HLFMCLMGDDVEPRRQFIEENALTVTNLD 883 >gi|87121026|ref|ZP_01076918.1| DNA gyrase, B subunit [Marinomonas sp. MED121] gi|86163864|gb|EAQ65137.1| DNA gyrase, B subunit [Marinomonas sp. MED121] Length = 807 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 228/575 (39%), Positives = 345/575 (60%), Gaps = 16/575 (2%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + +NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIN 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V++ + +TV DNGRGIPVE HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VTIHPDESITVSDNGRGIPVEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L +T+ + ++ Q +S G PL+P+ GT++ F+P F + Sbjct: 121 VSVVNALSESLTLTIRKDGKLYEQHYSHGDPLAPIAVIGDA-EANGTQVHFKPSADTFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++ E E F + GGL+++++ Sbjct: 180 I-KFYYDILAKRLRELSFLNSGVAINLKDERSGQE-------ESFNYTGGLRSFVEHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ VE A+ W E I Y N I +GGTH +G R A Sbjct: 232 NKTPINQIFHFICQRDDLDDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRAA 291 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + + E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 292 LTRTLNAFIEKEGLGKKTKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLA 454 VE + YL+++P EA ++ +I+ + R R+ R+ RK A+ LPGKLA Sbjct: 352 VEQEMSRRLSEYLLESPGEAKIIVNKMIDAARAREAARRARDLTRRKGALDIAGLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 412 DCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 471 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ E LRY ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H++ Sbjct: 472 TLITALGCGIGRDEFNVEKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEVIERGHIY 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL++I +G + Y DE ++ L E G Sbjct: 532 IAQPPLYKIARGKQEQYLKDEAALEQHLIEVALSG 566 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G ++ + E + L K + I R+KGLGEM QL ET MD + R +L Sbjct: 710 IKRGERTQHVDTVEDMKAWL---MKEASRGMAIQRYKGLGEMNPDQLWETTMDPDARRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I+ + LMG + + R FIQ+ A + ++ Sbjct: 767 QVSIDDAI----AADQMFTTLMGDEVEPRRNFIQDNALSVANLD 806 >gi|238023232|ref|ZP_04603658.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147] gi|237865615|gb|EEP66755.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147] Length = 801 Score = 502 bits (1291), Expect = e-139, Method: Composition-based stats. Identities = 233/573 (40%), Positives = 339/573 (59%), Gaps = 20/573 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 Q + Y A+SI++LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AGY + Sbjct: 2 TQQTNQEYGAASIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGYCD 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I V+++ + +T+ DNGRGIP HPK +S E+I+T LHAGGKFDN++Y++SGGLH Sbjct: 62 RITVAINADESITIEDNGRGIPTGIHPK-EGRSAAEVIMTILHAGGKFDNNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--RNKRGTRITFRPDP 213 GVG+SVVNALS L +T+ R+ +F RG ++PL+ N+ GTR+ F Sbjct: 121 GVGVSVVNALSYWLKLTIWREGKEHFVEFKRGETVAPLKAIGAAQPENRHGTRVQFLASE 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 FG + L K + ++L+ V+ ++ + E+F GG++ ++ Sbjct: 181 DTFGTV-EYKFETLAKRIRELSFLNNGVRIELFDKRD-------GKHEDFAESGGVQGFV 232 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 Q ++ + S+IF EK G TVE A+ W E + + N I +GGTH + Sbjct: 233 QYITGSKKPLHSKIFYALGEKDG---MTVECAMQWNESYQESVQCFTNNIPQRDGGTHLT 289 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 LR A+TR I +Y K + DD+ +LSV + +P+F+ QTK KLVS Sbjct: 290 ALRQAMTRTINQYIADNDIAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSS 349 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRL 449 + V L + ++L +NP +A + ++E + R RK RE+ R+ + L L Sbjct: 350 EISPVVNEVLGEALKNFLEENPNDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGL 409 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A E++ Sbjct: 410 PGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLA 469 Query: 510 NQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q++ L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 470 SQEVATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIE 529 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 + ++++ PPL++ G + Y DE K + L Sbjct: 530 RGYVYIAQPPLYKAKHGKQERYLKDEMEKDEFL 562 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L+ + + + R+KGLGEM QL ET M+ R LL+V I + Sbjct: 716 FEAALDSLLATAQKGLTMQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIEDAI----AAD 771 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ LMG + + R FI+ A ++ Sbjct: 772 ETFVTLMGDEVEPRRAFIEANALVAQNIDA 801 >gi|322436978|ref|YP_004219190.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9] gi|321164705|gb|ADW70410.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9] Length = 898 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 218/606 (35%), Positives = 346/606 (57%), Gaps = 16/606 (2%) Query: 9 FSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 ++ P + P++ A + + + Y A +I +LEGL VR RP MYIG Sbjct: 1 MASTPNTP----ANPDLTPLDPNAQANTDAAKAAGYSAENITVLEGLAAVRKRPAMYIGS 56 Query: 69 TDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE-NHPKFPNK 127 T E+ LHHL EV+DN++DE +AGYA+ I+V++ + +TVVD+GRGIPV+ Sbjct: 57 TGEQGLHHLVYEVVDNSVDEALAGYASRIDVTIHVDNSITVVDDGRGIPVDNKVINGVTM 116 Query: 128 STLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRG 187 ++++LT LHAGGKFD S Y++SGGLHGVG+S VNALS+ V + R + ++ G Sbjct: 117 PAVQVVLTILHAGGKFDASNYKVSGGLHGVGVSCVNALSEAFDVEIWRDGFAWEMDYAAG 176 Query: 188 IPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSC 247 P+S L K +GT++ F PD IF ++ L + A+L+ ++ + Sbjct: 177 DPISELRKMGPSTR-KGTKVHFLPDKTIFSV-TEYNYDTLANRLRQLAFLNKGIEITLTD 234 Query: 248 DKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 +++ K G + + F + GG+ +++ + ++++ + + E+ +E A+ Sbjct: 235 ERQTETKTGEAKTQSFKYLGGIAEFIKLINKGKAVLHEKPIYMEAERDNV---AMEIAMQ 291 Query: 308 WCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI--SIISDDLMI 364 + + + ++ N I T +GGTH SG + ALTR I + + + ++ DD+ Sbjct: 292 YNDAYSETVFTFANNINTVDGGTHLSGFKTALTRTINAAGQSLGLFKDVKENLSGDDVRE 351 Query: 365 SAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIE 424 V ++SV + +P+F GQTK KL + D TV+ + + +L QNP A K++ I+ Sbjct: 352 GLVVVISVKLSQPQFEGQTKGKL-NSDIAGTVQAFVNERLGAFLEQNPQVAKKIINKAID 410 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 + R RK R+ RK A+ LPGKLADCS+ EL++VEG+SAGG+AKQ R+ Sbjct: 411 AARAREAARKARDLTRRKGALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRD 470 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMT 542 R QA+LPL+GKILNV A +K+ +++I ++ ALGC + LRY K+I+MT Sbjct: 471 RKFQAILPLKGKILNVEKARYDKMLGHEEIRAMITALGCGIGKDDFDVSKLRYGKLILMT 530 Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 DADVDG+HI +LLLTFF++ M +LI++ H+++ PPLFRI +G Y DE ++ Sbjct: 531 DADVDGSHIRTLLLTFFFRHMTELIKRGHVYIAQPPLFRIKKGKFEQYIKDEREYVNVMV 590 Query: 603 EFKKHG 608 + G Sbjct: 591 KRASDG 596 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++ E + G+ + ++ R+KGLGEM A QL ET MD +RTL++V++ + T++ Sbjct: 814 REVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWETTMDPERRTLMQVKLED----IAATEE 869 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R +FI+E A + ++ Sbjct: 870 IFTTLMGEDVESRRRFIEENALDVKNLD 897 >gi|282889966|ref|ZP_06298501.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500159|gb|EFB42443.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 833 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 240/621 (38%), Positives = 342/621 (55%), Gaps = 38/621 (6%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A YDASSI +LEGL+ VR RPGMYIG T LH L E +DN +DE +AGY + I V Sbjct: 14 AQKAYDASSITVLEGLQAVRERPGMYIGDTASNGLHQLVYEAVDNCIDEAMAGYCSAIYV 73 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +L +G T+ DNGRGIP++ H K + S LE+++T LHAGGKFD TY++SGGL Sbjct: 74 TLHKDGAATIEDNGRGIPIQKHEKESLKQGRDVSALEVVMTILHAGGKFDKDTYKVSGGL 133 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+S V ALS +L V V Q + + +FS+G + PL RGT++TF PD Sbjct: 134 HGVGVSCVCALSKKLVVQVYNQGSTYEMEFSKGKVVRPLSIVGTTTK-RGTKLTFIPDDT 192 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 I FD L K + A+L+ + + +++ + F + GGL +++ Sbjct: 193 IMNV-TTFDYDILAKRLRELAFLNKGINIYFHDERDADKDD-----VNFCYSGGLLSFVS 246 Query: 275 TKLENRSLISSEIFTGKTEKKGTHR-GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 EN+ + ++G E ++ W + I SY N I T GGTH + Sbjct: 247 YLNENKEPLFPTPIYFHGSRQGDDGPIEFEVSMQWNDGYNENIYSYVNNIATRSGGTHLT 306 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G ALTR + Y + ++ +D+ ++SV + P+F GQTK +L + Sbjct: 307 GFSTALTRVLNTYIKNHGLLKSDKYSITGEDMREGLTAVISVKVANPQFEGQTKQRLGNS 366 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRL 449 D V+ + + YL +NP + + + + ++ R RK RE+ RK+A+ RL Sbjct: 367 DVGSVVQQIVGEELVIYLDENPAISRSIADKAMLAAQAREAARKARELTLRKSALDSARL 426 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC + E++IVEGDSAGGSAK R+R QA+LP+RGKILNV A EK+ Sbjct: 427 PGKLTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLG 486 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 NQ++ +V ALGC R + + LRY K+IIMTDADVDG+HI +LLLTFFY+ M L+E Sbjct: 487 NQEVGTMVAALGCGIGRDGFNIDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPGLVE 546 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQL 628 ++++ PPL+R+T+ S Y H E+ + E G I+I L Sbjct: 547 NNYIYIAQPPLYRVTRKKTSRYIHSEKEMDDYMLEL---GLSDIKIK------------L 591 Query: 629 KETAMDANK-----RTLLRVE 644 K+T +DA + RTLL VE Sbjct: 592 KDTELDAERMQELIRTLLEVE 612 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LI HL L I G KS +L +++G+ IEI R+KGLGEM A Sbjct: 726 LIADGHL------LDIIEDGGKSTPFSTLGE---VLAFIRENGRKGIEIQRYKGLGEMNA 776 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD KRTLLRV + + LMG R FI++ A + ++ Sbjct: 777 DQLWETTMDPEKRTLLRVTLPD----MVAADHMFTMLMGEAVPPRRAFIEQHALSVKNLD 832 >gi|254468460|ref|ZP_05081866.1| DNA gyrase, B subunit [beta proteobacterium KB13] gi|207087270|gb|EDZ64553.1| DNA gyrase, B subunit [beta proteobacterium KB13] Length = 797 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 233/577 (40%), Positives = 335/577 (58%), Gaps = 18/577 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANL 96 + Y + SI++L+GLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + Sbjct: 2 TEENKAYSSDSIKVLKGLEAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDD 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVEN-HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I+V + + ++V DNGRGIP + +S EI++T LHAGGKFD ++Y++SGGLH Sbjct: 62 IKVIIHPDNSVSVQDNGRGIPTDIKEDDEEKRSAAEIVMTELHAGGKFDQNSYKVSGGLH 121 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + V R N I +F+RG L+ +K GT + F P Sbjct: 122 GVGVSVVNALSDWLKLKVHRNNKIHEIEFARGERKESLKIIGDT-DKTGTEVQFLPSVST 180 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D F L K + ++L+ VK + + E F F GG+ +++ Sbjct: 181 FTDIN-FHFEILAKRIRELSFLNNGVKIELIDHR-------TGKSENFAFSGGVTGFVEY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 + ++ I F+ + EK G TVE ++ W + E + N I +GGTH +GL Sbjct: 233 LNKTKTTIHKNPFSAEGEKDGI---TVEVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGL 289 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R A+TR I Y E K + DD+ +LSV + EP+F+ QTK KLVS + Sbjct: 290 RGAMTRTINTYIESNDLAKKAKVDTTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEV 349 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 Q V++ + YL+++P +A + +++ + R RK RK A+ L LPG Sbjct: 350 QPVVQDVVAKKLTDYLLEHPADAKIICGKIVDAARAREAARKARDMTRRKGAMDSLGLPG 409 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++Q Sbjct: 410 KLADCQEKDPSLSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARLDKLLSSQ 469 Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 +I L+ ALG + E LRY ++IIMTDADVDGAHI +LLLTFFY++M L+E + Sbjct: 470 EIATLITALGTGIDKDFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLVENGY 529 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +++ PPLF++ Q K Y DE+ ++ L E G Sbjct: 530 VYIAQPPLFKVRQNKKEQYLKDEQELEQYLIESALDG 566 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ L+ K + I R+KGLGEM SQL ET MD + R LL+V+I + Sbjct: 711 EFKEALDWLMSEAKSGLNIQRYKGLGEMNPSQLWETTMDPSVRRLLQVKIEDAI----SA 766 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A ++++ Sbjct: 767 DQVFSTLMGDQVEPRRNFIESNALGVNNLD 796 >gi|167834927|ref|ZP_02461810.1| DNA gyrase subunit B [Burkholderia thailandensis MSMB43] Length = 822 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 237/593 (39%), Positives = 340/593 (57%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIRVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L +TV R +F RGI +SP++ Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRMLEELDGEQVSPMQVIGDTE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + +S++ IF EK G VE A+ W + + + Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC E LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDAELNAHMLRLALQG 586 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 733 NVSDFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821 >gi|297570053|ref|YP_003691397.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925968|gb|ADH86778.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2] Length = 801 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 228/570 (40%), Positives = 339/570 (59%), Gaps = 17/570 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 N++ +++Y A+ I++L GLE VR RP MYIG T E+ LHHL EV+DN++DE +AGY + Sbjct: 4 NETVTNDYGAAQIKVLTGLEGVRKRPAMYIGNTAEEGLHHLVYEVVDNSIDEALAGYCDR 63 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I++++ +G ++ DNGRGIPVE HP S LE+++ TLHAGGKFD+STY++SGGLHG Sbjct: 64 IKITIHKDGSVSSEDNGRGIPVEIHP-TEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 122 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS + + R I Q + G+ +E + GT+ITF PDP IF Sbjct: 123 VGVSVVNALSLKTIAEIKRNGKIHRQTYRYGVKEGEVEVVGETEK-SGTKITFLPDPGIF 181 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F + + A+L+ VK ++ AE F+F GG+K++++ Sbjct: 182 TETTEFKYEIIQARLRELAFLNKNVKIKIHDERTGAEDE-------FHFKGGIKSFVEYL 234 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTDEGGTHESGLR 335 NR+ + SE + K VE A + E E Y N I T EGG+H +G R Sbjct: 235 NRNRTPVHSEPVFVQGGKDNVQ---VEVAFQYFEGYTERLHSYVNNIYTKEGGSHVAGFR 291 Query: 336 VALTRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 +ALT+ I +YA + + + DD+ I+S + P+F GQTKTKL + + + Sbjct: 292 MALTKCINRYASDDIVPKNLREKLSGDDVREGITCIISTRVPSPQFEGQTKTKLGNSEVK 351 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI-RKLRLPGK 452 V++ + YL +NP EA K+L +E + R R+ +E++RK + + K Sbjct: 352 YIVDSICHEKISRYLEENPQEARKILSKAVEAARAREAARRAKELSRKKGSGMDVLMAAK 411 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LA+C E+F+VEGDSAGGSAKQ R+R QA+LPLRGKI+NV A EK+ ++++ Sbjct: 412 LAECQTKDPAKREIFLVEGDSAGGSAKQGRDRFFQAILPLRGKIMNVEKARFEKVLSSEE 471 Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 I ++ ALG + + + LRY K+IIMTDADVDGAHI +LLLTFFY++M L+E + Sbjct: 472 IKQIIAALGTGIGKEEFDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLVENGN 531 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +++ PPL+R+++G K + D+ L Sbjct: 532 VYIGQPPLYRLSRGKKEKFFLDDYSLNSFL 561 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++LE + + R+KGLGEM QL T M+ R LL+V I+ + + Sbjct: 717 REMLESIRSESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVTIDD----AEGADE 772 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG K + R FIQ A + + Sbjct: 773 IFTTLMGDKVEPRRDFIQSNALEVSSLD 800 >gi|91774359|ref|YP_544115.1| DNA gyrase subunit B [Methylobacillus flagellatus KT] gi|91708346|gb|ABE48274.1| DNA gyrase subunit B [Methylobacillus flagellatus KT] Length = 798 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 226/568 (39%), Positives = 337/568 (59%), Gaps = 21/568 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y++ SI+ILEGL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I+V++ Sbjct: 3 DYNSDSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVTI 62 Query: 102 DGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SGGLHGVG Sbjct: 63 HPDNSISVSDNGRGIPTDIKEDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG+ +SPL +RGT + F + F + Sbjct: 123 VSVVNALSDWLKLRIFRNGQVHQMEFRRGVAVSPLTITG-TTERRGTEVHFLASTETFTN 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ VK + + E F GG++ +++ Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVA 337 +++++ + F EK G VE ++ W + E + N I +GGTH +GLR A Sbjct: 234 SKTVLHPKPFYASGEKDGII---VEVSMQWNDSYSENVLCFTNNIPQRDGGTHLTGLRTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + Y E K + DD+ +LSV + EP+F+ QTK KLVS + Q Sbjct: 291 MTRTLNSYIEQNDLAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 V+ + +L++NP EA + +I+ + R RK RK A+ + LPGKLA Sbjct: 351 VQEVVSAKLAEFLLENPNEAKIICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q+I Sbjct: 411 DCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALG ++ + E LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 471 TLITALGTGIGKADFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMGELVERGHVY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601 + PPL+++ QG Y DE+ + L Sbjct: 531 IAQPPLYKVKQGRDERYLKDEQELDQYL 558 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K + ++ L+ K + I R+KGLGEM QL ET MD R LL Sbjct: 701 IKRGEKQQPVNS---FKEALDWLMSEAKHGLNIQRYKGLGEMNPEQLWETTMDPAVRRLL 757 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV+I+ + + LMG + + R FI+ A + ++ Sbjct: 758 RVQIDDAI----AADEIFTTLMGDQVEPRRAFIEGNALGVSNLD 797 >gi|269103823|ref|ZP_06156520.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163721|gb|EEZ42217.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP 102761] Length = 793 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 225/563 (39%), Positives = 341/563 (60%), Gaps = 17/563 (3%) Query: 52 LEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVV 110 L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V++ +G ++V Sbjct: 2 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIVVTICEDGSVSVS 61 Query: 111 DNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELH 170 D+GRGIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ Sbjct: 62 DDGRGIPTELHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVE 120 Query: 171 VTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKM 230 +T+ R I Q + G+P +PLE ++ GT I F P + F + F L K Sbjct: 121 LTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTT-FQYEILAKR 178 Query: 231 TQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTG 290 + ++L+ V + ++E +++ F + GG++ +++ N++ I ++F Sbjct: 179 LRELSFLNSGVSIKLNDERE------EGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHF 232 Query: 291 KTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELT 349 E++ TVE A+ W + I + N I +GGTH +G R ALTR + Y E Sbjct: 233 NVERED--GITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKE 290 Query: 350 Q--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHY 407 K + DD ++SV + +P+F+ QTK KLVS + + VE+ + + + Sbjct: 291 GYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEF 350 Query: 408 LVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTEL 466 L++NP +A + +I+ S R RK R RK A+ LPGKLADC + +EL Sbjct: 351 LLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL 410 Query: 467 FIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-R 525 +IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ L+ A+GC R Sbjct: 411 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGR 470 Query: 526 SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQG 585 +Y + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ H+++ PPL+++ +G Sbjct: 471 DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKG 530 Query: 586 TKSVYAHDEEHKQKILEEFKKHG 608 + Y D+E Q+ Sbjct: 531 KQEQYIKDDEDMQQFQTSLALEN 553 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 +++LE K + + + R+KGLGEM QL ET MD R ++RV IN + Sbjct: 709 FKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAV----AAD 764 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R FI+ A ++ Sbjct: 765 ELFTTLMGDQVEPRRNFIEANALNA-NLD 792 >gi|126730159|ref|ZP_01745971.1| DNA gyrase subunit B [Sagittula stellata E-37] gi|126709539|gb|EBA08593.1| DNA gyrase subunit B [Sagittula stellata E-37] Length = 807 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 224/565 (39%), Positives = 327/565 (57%), Gaps = 16/565 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +A +A+ + V + Sbjct: 12 EYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAKHADYVHVKI 71 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V DNGRGIP + H + S E+I+T LHAGGKFD ++Y++SGGLHGVG+SV Sbjct: 72 HADSSVSVRDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R KF G L ++GT + F F + Sbjct: 131 VNALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLASTDTFSNL-D 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D L K + A+L+ V+ D+ P E ++ GG++ +++ ++ Sbjct: 190 YDFHTLEKRLRELAFLNSGVRIILDDDR-----PAEPLHIELHYEGGVREFVKYLDRSKQ 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + + + EK G VE A+ W + E + N I +GGTH +G R ALTR Sbjct: 245 AVMPDPIYMEGEKDGI---GVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTR 301 Query: 341 GIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 ++KYA+ + + I+ DD +LSV + +P+F+ QTK KLVS + + VE+ Sbjct: 302 QLQKYAQESGIAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVES 361 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 + + + +NP EA ++ +IE + R RK RE RKTA+ KL DCS Sbjct: 362 LMNEKLGEWFEENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCS 421 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + A TELF+VEGDSAGGSA+ R+R QA+LPLRGKILNV A +++ +Q+I +LV Sbjct: 422 EKDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLV 481 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG R ++ LRY K+IIMTDADVDGAHI +LLLTFFY++M +LIE +L++ Sbjct: 482 MALGTGIGRDEFNISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQ 541 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G VY D+ + L Sbjct: 542 PPLYKVARGKSEVYLKDQTALEDYL 566 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ + G+ + + R+KGLGEM QL ET +D N RTLL+V I+ + + D Sbjct: 724 ELLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPNARTLLQVTIDD----MTEADDL 779 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R FIQ+ A ++++ Sbjct: 780 FTKLMGDVVEPRRDFIQQNALSVENLD 806 >gi|71064585|ref|YP_263312.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4] gi|71037570|gb|AAZ17878.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4] Length = 871 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 225/607 (37%), Positives = 354/607 (58%), Gaps = 29/607 (4%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D LP Q + + A + +Y + IR+L GLE VR+ Sbjct: 1 MSDS-------LPTDHQQLTSDSVVET---IAAAVVPEVLPSDYSSKDIRVLRGLEAVRV 50 Query: 61 RPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I++ + + ++V+DNGRG+PV+ Sbjct: 51 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 110 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 HP+ S ++I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS +L + + R+ Sbjct: 111 IHPE-EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 169 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q ++ G+P S +++ E ++ GT+I F P +F F+ L K + ++L+ Sbjct: 170 HHQTYTDGVPDSDIQQMEAT-DQTGTQIRFYPSNDVFTGTI-FEYDILAKRLRELSFLNS 227 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V+ + ++ I ++ EF GGL ++ + I+ ++ G Sbjct: 228 GVRIVLTDER-------IDKRHEFEHKGGLSEFVSYINAGKDGINDVFHFISNQEDGI-- 278 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ W + ++ + N I +GGTH SG R ALTR + Y + K + Sbjct: 279 -SVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVV 337 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 DD I+SV + +P+F+ QTK KLVS + + VE+A+ D F+ YL +NP Sbjct: 338 ATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGK 397 Query: 417 KLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 + +I+ + R RK RKT + LPGKLADC + +EL+IVEGDSAG Sbjct: 398 LIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAG 457 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLR 534 GSAKQ R+R QA+LPL+GKILNV A +K+ ++Q++ +L+ ALGC +Y + +R Sbjct: 458 GSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVR 517 Query: 535 YEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDE 594 Y K+IIMTDADVDG+HI +LLLTFF+++ +LIE+ ++++ PPL+++ +G + +Y D+ Sbjct: 518 YHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDD 577 Query: 595 EHKQKIL 601 E + L Sbjct: 578 EALKAYL 584 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + I R+KGLGEM A QL +T MD R +LRV I + Sbjct: 784 RDFDYLWQQMMLDARRGLAIQRYKGLGEMNADQLWDTTMDPENRRMLRVNIEDAI----A 839 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A + ++ Sbjct: 840 ADHMFTCLMGDHVEPRRIFIEENALTVSNLD 870 >gi|296134959|ref|YP_003642201.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12] gi|295795081|gb|ADG29871.1| DNA topoisomerase (ATP-hydrolyzing) [Thiomonas intermedia K12] Length = 652 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 250/662 (37%), Positives = 355/662 (53%), Gaps = 44/662 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y SSIR+L+GLEPVR RPGMY T H+ EVIDN+ DE + GY I V+L Sbjct: 9 YSESSIRVLKGLEPVRQRPGMY---TRTDNPLHIVQEVIDNSADEALGGYCQHIAVTLHT 65 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGIS 160 +G ++V D+GRGIP HP+ N +E++ T LHAGGKFD Y SGGLHGVG+S Sbjct: 66 DGSISVEDDGRGIPFGLHPE-ENAPVVELVFTRLHAGGKFDKLQGGAYSFSGGLHGVGVS 124 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRITFRPDPKIFGD 218 V NAL+ L VTV R + F+ G + PL ++ R++R GTR+ PD K F Sbjct: 125 VTNALAARLEVTVWRDGQVAHLVFAGGDVIEPLAVRKAARDERRSGTRVRVWPDAKYFDS 184 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 A L + +SKA L VK +K + + + GL+ YL + L Sbjct: 185 PH-LPLAELTHLLRSKAVLLPGVKVDLIQEK-------TGDTTHWEYARGLRDYLLSSLP 236 Query: 279 NRSLIS---SEIFTGKTEKKGTHRGT-VEWAIAWCEENPE-ITSYCNTILTDEGGTHESG 333 I E + +E++ G W + + EE SY N I T GGTHE+G Sbjct: 237 AEPYIDLFEGEHYASASEQESFAEGEGAAWCVGFTEEGAVLRESYVNLIPTPAGGTHEAG 296 Query: 334 LRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR L + +K + EL + + ++ +DL A +LS + +P+F GQ K KL S DA Sbjct: 297 LREGLFQAVKGFIELHNLQPKGVKLLPEDLFARASFVLSARVLDPQFQGQIKEKLNSRDA 356 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 R V A+R + +L + + KL E VI +++ RLR ++ E + + + L PGK Sbjct: 357 LRLVGQAVRPTLELWLHERVDQGKKLAELVIRQAQSRLRAAQKVEKKKGSGVAVL--PGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L DC TELF+VEGDSAGGSAK R++ QAVLPLRGK+LN +++ N + Sbjct: 415 LTDCESRDTERTELFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNSWEIERDRLFANTE 474 Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I D+ A+G + D LRY K+ I++DADVDG+HI LLLT F++ LIE+ Sbjct: 475 IHDIAVAIGVDPHGKDDAPDLSNLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIER 534 Query: 570 KHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLG 621 H+ + PPL+R+ +G K +Y D+ Q ++ +K G G +ISRFKGLG Sbjct: 535 GHVCVARPPLYRLDAPARGKKPAQKIYVLDDAELQAAQDKLRKDGLKDGAWQISRFKGLG 594 Query: 622 EMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASF 680 EM A QL +T ++ + R L RV + + ++LMG +A R ++E Sbjct: 595 EMSAEQLWDTTLNPDTRRLYRVRPDD-------AEALFHQLMGKGEAQARRGLMEEYGDQ 647 Query: 681 ID 682 I+ Sbjct: 648 IE 649 >gi|75674203|ref|YP_316624.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255] gi|74419073|gb|ABA03272.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255] Length = 813 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 240/576 (41%), Positives = 343/576 (59%), Gaps = 14/576 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 A A+ Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 10 ADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 69 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A +EV L+ + +TV D+GRGIPV+ H K S E+I+T LHAGGKFD ++Y++SG Sbjct: 70 HATAVEVILNADNSVTVRDDGRGIPVDIH-KGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 128 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS +L + + R++ +F+ G L+PL+ +RGT +TF Sbjct: 129 GLHGVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRGTEVTFLAS 188 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F + +D A L + A+L+ V S + E+ E+ + GG+ + Sbjct: 189 TETFTNI-EYDFATLEHRLRELAFLNSGVNILLSDMRHAVERR-----EQMMYEGGVVEF 242 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 ++ N+ + ++ + E G +VE A+ W + E + N I +GGTH Sbjct: 243 VKYLDRNKKAMVADPIMVRAEMNGI---SVEAALWWNDSYHENVLCFTNNIPQRDGGTHL 299 Query: 332 SGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 +G R ALTR + YA+ K I++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 300 AGFRGALTRQVNGYADAMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSE 359 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLP 450 + VEN + + + ++P EA ++ V+E + R RK RE RK A+ LP Sbjct: 360 VRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLP 419 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A +K+ ++ Sbjct: 420 GKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSS 479 Query: 511 QQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 +QI L+ ALG + + LRY K+I+MTDADVDGAHI +LLLTFF+++M LIE Sbjct: 480 EQIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEA 539 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 HL++ PPL+++T+G Y DE + L E Sbjct: 540 GHLYIAQPPLYKVTRGKSERYLKDERALEDYLIETG 575 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM QL ET +D ++R+LL+V+I + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKI----KEVDEADDI 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812 >gi|84684515|ref|ZP_01012416.1| DNA gyrase subunit B [Maritimibacter alkaliphilus HTCC2654] gi|84667494|gb|EAQ13963.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2654] Length = 805 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 225/578 (38%), Positives = 333/578 (57%), Gaps = 16/578 (2%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+A+ Sbjct: 4 DAQNNSEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V++ + ++V DNGRGIPV H + S E+I+T LHAGGKFD+++Y++SGGLH Sbjct: 64 YVTVTVHADSSVSVYDNGRGIPVGMHAE-EGVSAAEVIMTQLHAGGKFDSNSYKVSGGLH 122 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVG+SVVNALSD L + + R +F RG LE K GT + F Sbjct: 123 GVGVSVVNALSDWLELRIWRDGKEHIARFERGDTAKHLEVVGDANGKTGTEVRFLASTDT 182 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F + + L + A+L+ V+ ++ P + E ++ GG+K +++ Sbjct: 183 FSNL-EYSFKTLETRLRELAFLNSGVRIILKDER-----PAEPLETELHYEGGVKEFVKY 236 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGL 334 ++ + E E+ G +E A+ W + E+ + N I +GGTH +G Sbjct: 237 LDRHKQPMIEEPIFITGERDGI---GIEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGF 293 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR + YA + K ++ DD +LSV + +P+F+ QTK KLVS + Sbjct: 294 RGALTRTMNLYANSSGLAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 353 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPG 451 + VE+ + + + ++P EA ++ +IE + R RK RE+ RK A LPG Sbjct: 354 RPAVESLMNERLSDWFEEHPNEAKMIVGKIIEAALAREAARKARELTRKKATHDVASLPG 413 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV A +++ ++ Sbjct: 414 KLADCQEKDPSKRELFIVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSE 473 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 + L+ ALG R ++ E LRY K++IMTDADVDGAHI +LLLTFFY++M ++I+ Sbjct: 474 TVGTLITALGTGIGRDEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIDGG 533 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D + L + G Sbjct: 534 YLYIAQPPLYKVSRGRSEVYIKDVPALEDYLIQQGIEG 571 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + + R+KGLGEM QL ET +D RTLL+V+++ ++ Sbjct: 722 DLLQAILAEGEKGLTLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVDDLADADDL---- 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQQNALSVENLD 804 >gi|316931400|ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1] gi|315599114|gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1] Length = 813 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 243/580 (41%), Positives = 338/580 (58%), Gaps = 14/580 (2%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + A + A Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DN Sbjct: 2 TEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 A+DE +AG+A+ +EV L+ +G +TV D+GRGIPV+ H K S E+I+T LHAGGKFD Sbjct: 62 AIDEALAGHASAVEVILNADGSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFD 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 ++Y++SGGLHGVG+SVVNALS +L + V R +F+ G ++PL +RG Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSSKLILRVWRDGKEHYIEFAHGDAVAPLSVVGDAGGRRG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T +TF + F + +D A L + A+L+ V S + EK EE Sbjct: 181 TEVTFYASSETFTNV-EYDFATLEHRLRELAFLNSGVNILLSDLRHAVEKR-----EEMR 234 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTIL 323 + GG+ +++ N+ I + G VE A+ W + E + N I Sbjct: 235 YEGGVTEFVKYLDRNKKPIVPTPIVVAADLNGI---AVEAALWWNDTYHENVLCFTNNIP 291 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR + YA+ K +++ DD +LSV + +P+F+ QT Sbjct: 292 QRDGGTHLAGFRAALTRQLTGYADNNAKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VEN L + + ++P EA ++ VIE + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVENVLNEALAAWFEEHPSEAKTIVGKVIEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A Sbjct: 412 ALDIASLPGKLADCQERDPSKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ +++QI L+ ALG R + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGRDDFDIGKLRYHKIILMTDADVDGAHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M LIE +L++ PPL+++T+G Y DE + L Sbjct: 532 QMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYL 571 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM QL ET +D N R+LL+V++ + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPGQLWETTLDTNARSLLQVKV----REVDEADDI 786 Query: 659 INKLMGTKADERFKFIQER 677 KLMG + R +FIQE Sbjct: 787 FTKLMGDVVEPRREFIQEN 805 >gi|89256995|ref|YP_514357.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica LVS] gi|115315355|ref|YP_764078.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica OSU18] gi|156503195|ref|YP_001429260.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009376|ref|ZP_02274307.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. holarctica FSC200] gi|290954484|ref|ZP_06559105.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica URFT1] gi|295312089|ref|ZP_06802902.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica URFT1] gi|89144826|emb|CAJ80165.1| Topoisomerase IV, subunit B [Francisella tularensis subsp. holarctica LVS] gi|115130254|gb|ABI83441.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|156253798|gb|ABU62304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 627 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 243/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNIENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFIIDNFSNGDSYLDAV-FCWCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|227496000|ref|ZP_03926311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226834488|gb|EEH66871.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 746 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 238/739 (32%), Positives = 354/739 (47%), Gaps = 98/739 (13%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 +S +Y A + +LEGLE VR RPGMYIG TD++ L H E+IDN++DE + GY + I V Sbjct: 4 SSSSYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIIDNSVDEALEGYGDSIAV 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ +G + V DNGRG+PV+ P + +E++ T LHAGGKF +Y +GGLHGVG Sbjct: 64 TVHEDGSIEVRDNGRGVPVDVEP-GSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGA 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIP----------------------LSPLEKKE 197 SVVNALS+ + V V R ++ F RG+P S L Sbjct: 123 SVVNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIG 182 Query: 198 KVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 KV+ GTR+ + DP+IF + +DAA L + ++L + + ++ E Sbjct: 183 KVKRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAAR 242 Query: 257 IPEK---------------------------------------EEFYFPGGLKTYLQTKL 277 + E F GG + ++ Sbjct: 243 AEKAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLA 302 Query: 278 ENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPEIT-SYC 319 + S+ + TG+ + +V+ A+ W I S+ Sbjct: 303 TDASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGIGYDTIERSFV 362 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQNK-----RAISIISDDLMISAVGILSVFI 374 N I T GGTH +G A+T+ ++K + R I DD++ +++V + Sbjct: 363 NIIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVRV 422 Query: 375 REPEFAGQTKTKLVSLDAQRTV----ENALRDPFDHYLVQNPIEATKLLEWVIERSEERL 430 EP+F GQTK L + ++ V E L ++ L E V+ R+ Sbjct: 423 PEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRARI 482 Query: 431 RRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAV 489 R +E RKTA+ LP KLADC + +ELFIVEGDSA G+AK ARN QA+ Sbjct: 483 SARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQAL 542 Query: 490 LPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGA 549 LP+RGKILNV A + N + ++Q +G + + + RY KVI+MTDADVDGA Sbjct: 543 LPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGRTFDLDSARYGKVILMTDADVDGA 602 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHKQKILEE 603 HI +LLLT F++ M +IE ++ PPL RI + + +Y + ++ + L + Sbjct: 603 HIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRK 662 Query: 604 FKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLM 663 +K G+ E R+KGLGEM A QL ET M+ RTL R+ + + L + ++ LM Sbjct: 663 LEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELL-EAENVFELLM 721 Query: 664 GTKADERFKFIQERASFID 682 G+ + R FI E A ID Sbjct: 722 GSSVEPRRDFIVEGAQDID 740 >gi|227823871|ref|YP_002827844.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234] gi|227342873|gb|ACP27091.1| DNA gyrase, subunit B [Sinorhizobium fredii NGR234] Length = 811 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 236/574 (41%), Positives = 343/574 (59%), Gaps = 16/574 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 5 SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+++ V+L+ +G TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y++SG Sbjct: 65 HADIVTVTLNPDGSCTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L + + R + F+ G+ PL ++ GT +TF P Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRAGKVHEMSFTHGVADGPLTVTGDAGSETGTEVTFLPS 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F FD A L + A+L+ V+ + + + + GGL+ + Sbjct: 184 EQTFSKT-EFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDE-----MMYDGGLEAF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHE 331 + + + + + + EK G TVE A+ W + E + N I +GGTH Sbjct: 238 VAYLDRAKKPLVHKPVSIRGEKDGI---TVEVAMWWNDSYHENVLCFTNNIPQRDGGTHM 294 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR I YA+ + K +S+ DD +LSV + +P+F+ QTK KLVS Sbjct: 295 AGFRGALTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + VE+ + + + +L +NP +A L+ V+E + R RK RE RK A+ Sbjct: 355 SEVRPVVESLVNEALNVWLEENPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ +E+F+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A +K+ Sbjct: 415 LPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 474 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +LI Sbjct: 475 SSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELI 534 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 E+ HL++ PPL+++T+G + Y DE+ + L Sbjct: 535 ERGHLYIAQPPLYKVTRGKSAQYLKDEKALEDYL 568 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 10/114 (8%) Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PP+ R GT + + +L+ G+ + + R+KGLGEM A QL ET Sbjct: 707 VYAA-PPVLRRRDGTHEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +D N R+LL+V+++ D ++LMG + + R FIQE A + ++ Sbjct: 761 TLDPNVRSLLQVKVSDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810 >gi|85710072|ref|ZP_01041137.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1] gi|85688782|gb|EAQ28786.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1] Length = 848 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 220/602 (36%), Positives = 353/602 (58%), Gaps = 27/602 (4%) Query: 26 SGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDN 84 + + A N+ +Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DN Sbjct: 4 NTPENGAGAPKNEKMKGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN 63 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF- 143 A+DE +AG+ +L+ + L+ +G ++V DNGRGIPV+ H K S E+I+T LHAGGKF Sbjct: 64 AIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPVDMH-KEEGVSAAEVIMTQLHAGGKFE 122 Query: 144 ---DNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR 200 D++ Y++SGGLHGVG+SVVNALS+ L + + R +F G ++ LE K Sbjct: 123 NTSDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRNGQEHWMRFEHGDAVNSLEIKGDAP 182 Query: 201 N----------KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 K+GTR+TF+ F + FD +L + A+L+ V+ + Sbjct: 183 KVEQNPDDNGYKKGTRVTFKASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRILIRDLR- 241 Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWC 309 + P + + ++ GG+ +++ N+ + + + EK G +EW ++ Sbjct: 242 ----HEEPIEHDLFYEGGIAAFVKWLDRNKEALIEDPISVSAEKDGIGIDVALEWNDSY- 296 Query: 310 EENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN--KRAISIISDDLMISAV 367 + + N I +GGTH + R ALT + YAE + K +S+ +D+ Sbjct: 297 --YENVLCFTNNIPQRDGGTHLAAFRAALTSTLNNYAERSGLLSKAKVSLSGEDMREGLT 354 Query: 368 GILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSE 427 I+SV + +P+F+ QTK KLVS + ++ +++ + + + +L +NP +A +++ +++ + Sbjct: 355 AIVSVKLPDPKFSSQTKDKLVSSEVRQPLQSLMGEKMNEWLEENPGDAKAIIQKIVDAAA 414 Query: 428 ERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQ 487 R ++ RE++RK A+ LPGKL+DC + A ELF+VEGDSAGGSAK R+ Q Sbjct: 415 AREAAKRAREMSRKGAMSVASLPGKLSDCRERDATKAELFLVEGDSAGGSAKGGRDSQYQ 474 Query: 488 AVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVD 547 A+LPLRGKILNV A ++I +++++ L+QA+G R ++ E LRY K++IMTDADVD Sbjct: 475 AILPLRGKILNVERARFDRIISSREVGTLIQAMGTGIRDEFDLEKLRYHKIVIMTDADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHI +LLLTFF+++M ++++ HLF+ PPLF++ +G VY D+ + L + Sbjct: 535 GAHIRTLLLTFFHRQMPEIVKAGHLFIAQPPLFKVAKGKSEVYVKDQAALDRYLVDAGLQ 594 Query: 608 GK 609 G+ Sbjct: 595 GR 596 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ G+ + ISR+KGLGEM QL ET +D R LL+V++ T + Sbjct: 765 QLLDTVLAAGRKGLSISRYKGLGEMNPEQLWETTLDPENRILLQVKVED----ADVTDEI 820 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ+ A + ++ Sbjct: 821 FTRLMGDVVEPRREFIQDNALNVANLD 847 >gi|320108482|ref|YP_004184072.1| DNA gyrase subunit B [Terriglobus saanensis SP1PR4] gi|319927003|gb|ADV84078.1| DNA gyrase, B subunit [Terriglobus saanensis SP1PR4] Length = 877 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 224/603 (37%), Positives = 350/603 (58%), Gaps = 21/603 (3%) Query: 28 EIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMD 87 + A + Y + +I+ILEGLE VR+RP MYIG T E+ LHHL EV+DN++D Sbjct: 13 SGTATEAAPQSVQTTTYTSDNIKILEGLEAVRLRPAMYIGSTGEQGLHHLVYEVVDNSVD 72 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN--HPKFPNKSTLEIILTTLHAGGKFDN 145 E +AG+A I+V++ + +TVVD+GRGIPV+ P + +E++LT LHAGGKFD Sbjct: 73 EALAGHATRIDVTIHVDNSVTVVDDGRGIPVDMKTLPDGSKMAAVEVVLTKLHAGGKFDA 132 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 S+Y++SGGLHGVG+S VNALS+E V + R + Q +S+G PL + + V KRGT Sbjct: 133 SSYKVSGGLHGVGVSCVNALSEEFDVEIWRDGHTYQQNYSKGDPLEAVREVG-VSKKRGT 191 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F PD IF ++ L + A+L+ ++ + ++ I K + +F + Sbjct: 192 KVHFLPDRSIFTV-HEYNYDTLANRLRQLAFLNKGIEITLTDERSIDAKG-EAKHNDFKY 249 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GG+ +++ + ++++ + + E+ + +E A+ + + + S+ N I T Sbjct: 250 NGGIAEFIKHLNKGKAVLHEKPIYMEAER---GQLVMEIALQYNDAYSETVFSFANNINT 306 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R +LTR I + + + DD+ V ++SV + +P+F GQ Sbjct: 307 VDGGTHLSGFRTSLTRTINAAGQSMGLFKDLKESLSGDDVREGLVAVVSVKLPQPQFEGQ 366 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KL + D V++ + + + QNP A K++ I+ + R RK R+ RK Sbjct: 367 TKGKL-NSDISGQVQSFVNERLGVFFEQNPQVAKKIINKAIDAARAREAARKARDLTRRK 425 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADCS+ EL++VEG+SAGG+AKQ R+R QA+LPL+GKILNV Sbjct: 426 GALDGGGLPGKLADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEK 485 Query: 502 AGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ +++I ++ ALG + LRY K+I+MTDADVDG+HI +LLLTFF+ Sbjct: 486 ARYDKMLGHEEIRAMITALGTGIGKDDFDLAKLRYGKLILMTDADVDGSHIRTLLLTFFF 545 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGL 620 + M +LI++ H+++ PPLF+I +G + Y DE K++ + G I R+ Sbjct: 546 RHMGELIKRGHVYIAQPPLFKIKKGKREEYIKDEREFVKVMVKRASDGM----IVRY--- 598 Query: 621 GEM 623 GE Sbjct: 599 GES 601 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +++ + + GK + ++ R+KGLGEM A QL ET MD +RTL+ V++ + T++ Sbjct: 793 RELFDYVIEQGKKEYQVQRYKGLGEMTAEQLWETTMDPARRTLVIVKLED----IAATEE 848 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R KFI+E A + ++ Sbjct: 849 IFTTLMGEDVEARRKFIEENALDVKNLD 876 >gi|254369845|ref|ZP_04985855.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica FSC022] gi|157122804|gb|EDO66933.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. holarctica FSC022] Length = 627 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 244/642 (38%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNIENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK +YF GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWYFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDLSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G S LRY K+ I+ DAD DG HIA+LL F + LIE H+++ PPL Sbjct: 468 IGVDPDSDDI-SALRYNKICILADADSDGLHIATLLCAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|187931098|ref|YP_001891082.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp. mediasiatica FSC147] gi|187712007|gb|ACD30304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 627 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 241/642 (37%), Positives = 357/642 (55%), Gaps = 21/642 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY+A SI +L GL+PV+ RPGMY T+ + +HL E+IDN++DEV+AG+A+ I ++L Sbjct: 2 QNYNAKSIEVLTGLDPVKKRPGMY---TNTENPNHLIQEIIDNSVDEVLAGFASKINITL 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + V D+GRG+PV+ HP+ S +E+I+T LH+GGKF N Y SGGLHGVG+SV Sbjct: 59 YEDNSIEVADDGRGMPVDIHPEH-KMSGIELIMTKLHSGGKFSNKNYTHSGGLHGVGVSV 117 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 VNALS L + R ++ F G LE + V + GT+I F P+ K F D Sbjct: 118 VNALSTRLEAEIKRDGNVYHIVFEDGFKTKDLEIIDNVGKKNTGTKIRFWPNKKYFDDI- 176 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 + L + ++KA L + +S + + EK ++F GLK YL KLE Sbjct: 177 KVNFKALKNLLEAKAILCKALTIKYSNEIK-------KEKLTWHFETGLKGYLDHKLEAE 229 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 +L + ++ V + SY N I T + GTH +GL+ + Sbjct: 230 TLPAEPFMIDNFSNGDSYLDAV-FCWCEDPSESIKNSYVNLIPTPQDGTHVTGLKNGIYD 288 Query: 341 GIKKYAELTQNK-RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 IK Y E + I I ++D ++SV I P+FAGQTK KL + D V A Sbjct: 289 AIKAYIEKNSLSVKNIKITANDSFAQLNYVISVKITNPQFAGQTKEKLSNKDVTNFVATA 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQN 459 ++D +L QNP EA +++E + + +++R+ ++ ++ +RLPGKL DC + Sbjct: 349 VKDLLTIWLNQNPDEARQIVENISKVAQKRI-NADKKTTRKRIMNTTIRLPGKLTDCISS 407 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 + TELFIVEGDSAGGSAKQAR+++ QAVLPL+GKILN ++ I N+Q+I ++ A Sbjct: 408 DVNSTELFIVEGDSAGGSAKQARDKNFQAVLPLKGKILNSWELDADTIMNSQEIHNIATA 467 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 +G + LRY K+ I+ DAD DG HIA+L+ F + LIE H+++ PPL Sbjct: 468 IGVDPDNDDI-SALRYNKICILADADSDGLHIATLICAMFLKHFRKLIENGHIYIAQPPL 526 Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 FRI G + YA DE + IL + K GK+ I RFKGLGEM +QL+E+AMD + R Sbjct: 527 FRIDIGKSTFYALDENERDTILTKNSKL-PGKVNIMRFKGLGEMNPAQLRESAMDVSSRR 585 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI 681 LL++ I+ + + L +A +R +++ Sbjct: 586 LLQLTISDVYDDTEMLDML---LAKKRAKDRRDWLENYGDRA 624 >gi|260574430|ref|ZP_05842434.1| DNA gyrase, B subunit [Rhodobacter sp. SW2] gi|259023326|gb|EEW26618.1| DNA gyrase, B subunit [Rhodobacter sp. SW2] Length = 805 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 228/580 (39%), Positives = 334/580 (57%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + YDA SI++L GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEAAKTTPTYDADSIKVLRGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A + V + +G ++V DNGRGIPV+ H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ATAVSVKIHADGSVSVRDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L + V R + KF G + L ++GT + F Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEYFAKFVHGDTVEHLRIVGDAPGQKGTEVRFLASL 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + + L + A+L+ VK ++ P K E + GG++ ++ Sbjct: 181 QTFSNL-DYVFKTLENRLRELAFLNSGVKIVLEDER-----PAEPLKTELMYEGGVREFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++S I ++ E+ G TVE A+ W + + + N I +GGTH + Sbjct: 235 RYLDRSKSSIMADPIYIIGERAGI---TVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I YA+ + + DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTINNYAQSSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VEN + + + +NP A ++ +IE + R RK R+ RKTA+ L Sbjct: 352 EVRPAVENLVNEKLAEWFEENPANAKIIVGKIIEAALAREAARKARDLTRRKTALDVASL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC + +ELF+VEGDSAGGSAKQ R+R+NQAVLPL+GKILNV A +++ Sbjct: 412 PGKLADCQERDPAKSELFLVEGDSAGGSAKQGRSRANQAVLPLKGKILNVERARFDRMLA 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I L+ ALG R ++ LRY K++IMTDADVDGAHI +LLLTFF+++M +IE Sbjct: 472 SQEIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQVIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++ +G VY D+ + L + G Sbjct: 532 GGYLYIAQPPLYKVARGKSEVYLKDQAALEDYLVQMGVDG 571 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ G+ + + R+KGLGEM QL ET +D RTLL+V+++ L + D Sbjct: 722 ELLKAILAEGEKGLTLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDD----LAEADDI 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686 KLMG + R +FIQ+ A ++++ T Sbjct: 778 FTKLMGDVVEPRREFIQQNALNVENLDT 805 >gi|326773489|ref|ZP_08232772.1| DNA gyrase, B subunit [Actinomyces viscosus C505] gi|326636719|gb|EGE37622.1| DNA gyrase, B subunit [Actinomyces viscosus C505] Length = 750 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 230/745 (30%), Positives = 346/745 (46%), Gaps = 97/745 (13%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P+ N+++ +Y A + +LEGLE VR RPGMYIG TD++ L H E++DNA+DE + G Sbjct: 2 PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + I V++ +G + V DNGRG+PV+ P + +E++ T LHAGGKF +Y +G Sbjct: 62 HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------------- 199 GLHGVG SVVNAL++ + V V R ++ F RG P + + Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRSPSSPFTGFTKASE 180 Query: 200 --------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249 R GTR+ + DP+IF +DAA L + ++L + + Sbjct: 181 LRVIGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240 Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271 ++ + E F GG Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300 Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314 ++ + S+ + TG+ + V+ A+ W Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360 Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368 S+ N I T GGTH +G ALT+ ++K E + + DD+M Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTA 420 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424 +++V + EP+F GQTK L + ++ V + +A L E ++ Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVG 480 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 R+ R +E RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR+ Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV A + N + ++Q +G + + E RY KVI+MTD Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597 ADVDGAHI +LLLT F++ M +IE +F PPL RI + + +Y + +E Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 L ++ G+ E R+KGLGEM A QL ET M+ RTL R+ + + + + + Sbjct: 661 VSALRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQIM-EAES 719 Query: 658 SINKLMGTKADERFKFIQERASFID 682 LMG+ + R FI E A +D Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744 >gi|229820414|ref|YP_002881940.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM 12333] gi|229566327|gb|ACQ80178.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM 12333] Length = 708 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 230/707 (32%), Positives = 343/707 (48%), Gaps = 64/707 (9%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ Sbjct: 1 MTTAAPESTYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCVWEIIDNSVDEALGGHG 60 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 I++ L + + V D+GRGIPV+ + S +E++ T LHAGGKF S+Y SGGL Sbjct: 61 EAIDIVLHPDSSVEVRDSGRGIPVDTVERL-GLSGVEVVFTKLHAGGKFGGSSYGSSGGL 119 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV--------------- 199 HGVG SVVNALS L V V R + F RG P + + Sbjct: 120 HGVGASVVNALSARLDVEVDRAGKTYRMTFRRGEPGTFDDGAVPSPEAPFAPFTDHSELA 179 Query: 200 ------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 R + GTR+ + D +IF A F LL + A+L + ++ + Sbjct: 180 VVAKVPRGRTGTRVRYWADRQIFPVSAAFAYDELLTRARQTAFLVPGLSITVRDERRLPG 239 Query: 254 KYGIP--EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KK 295 G +E F + GG++ + + S+ + + G ++ Sbjct: 240 TPGEGGVVEEVFRYDGGVRDFADYLSPDASVTDTWLLRGSDTFTESIQALDDAGHLRAQE 299 Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELT----- 349 V+ A+ W S+ N I T +GG+H +G L + ++K E+ Sbjct: 300 VERTCEVDVALRWGIGYETEVRSFVNIIATPKGGSHLAGFEQGLLKTVRKQVEVNARRLK 359 Query: 350 --QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ----RTVENALRDP 403 I DD+M +++V + EP+F GQTK L + + R VE L Sbjct: 360 LTGKNGKERIEKDDVMAGLTAVVTVRLPEPQFEGQTKEVLGTAPVRAIVARVVERELTAL 419 Query: 404 FDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK-TAIRKLRLPGKLADCSQNIAH 462 +A +L+ V++ R+ R +E++R+ A+ LP KLADC + Sbjct: 420 LTSTKRGEKTQAAAVLDKVVDEMRARVAARTHKEISRRKNALETSSLPAKLADCRSDDVD 479 Query: 463 GTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGC 522 +ELFIVEGDSA G+AK AR+ QA+LP+RGKILNV A + N + ++Q LG Sbjct: 480 RSELFIVEGDSALGTAKLARDSDFQALLPIRGKILNVQKASLADMLKNLECAAIIQVLGA 539 Query: 523 RTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + + E RY +V++MTDADVDGAHI +LLLT F++ M L+E +F PPL R+ Sbjct: 540 GSGRTFELEAARYGRVVLMTDADVDGAHIRTLLLTLFFRYMRPLVEAGRVFAAVPPLHRV 599 Query: 583 T------QGTKSVYAHDEEHKQKILEEFKKHGKG-KIEISRFKGLGEMLASQLKETAMDA 635 + + VY + E +++L + +K G+ K I R+KGLGEM A QL ET MD Sbjct: 600 EISGSGGRKPEVVYTYSESELRQLLAKLEKSGRRYKQPIQRYKGLGEMDAHQLAETTMDP 659 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFID 682 RTL ++ ++ L+ + LMG R F+ A+ +D Sbjct: 660 AHRTLRKIRLSD----LERAEQVFELLMGNDVAPRKDFLVAGAAELD 702 >gi|159184123|ref|NP_353052.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58] gi|159139460|gb|AAK85837.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58] Length = 811 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 228/575 (39%), Positives = 337/575 (58%), Gaps = 16/575 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 + + A+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 4 TSSSEVGANAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 63 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A+L+ V+L+ +G +TV DNGRGIP + H S E+I+T LHAGGKFD ++Y++S Sbjct: 64 GHADLVTVTLNADGSVTVTDNGRGIPTDIHS-SEGVSAAEVIMTQLHAGGKFDQNSYKVS 122 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRP 211 GGLHGVG+SVVNALS L + + R + F+ G+ +PL + + GT +TF Sbjct: 123 GGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTFLA 182 Query: 212 DPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKT 271 P+ F +D L + A+L+ V+ + + K + GGL+ Sbjct: 183 SPQTFT-MTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQE-----LLYDGGLEA 236 Query: 272 YLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTH 330 +++ + + + +EK G TVE A+ W + E + N I +GGTH Sbjct: 237 FVRYLDRAKKPLVDKPIAIHSEKDGI---TVEVALWWNDSYHENVLCFTNNIPQRDGGTH 293 Query: 331 ESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFAGQTKTKLV 388 +G R ALTR + YA+ + + + +D ILSV + +P+F+ QTK KLV Sbjct: 294 MAGFRAALTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLV 353 Query: 389 SLDAQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKL 447 S + + VE+ + + +L ++P EA L+ + V R+ + RK A+ Sbjct: 354 SSEVRPVVESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIA 413 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R QA+LPLRGKILNV A +K+ Sbjct: 414 SLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKM 473 Query: 508 RNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M +L Sbjct: 474 LSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEL 533 Query: 567 IEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 IE+ HL++ PPL+++T+G Y DE+ ++ L Sbjct: 534 IERGHLYIAQPPLYKVTRGKSVQYLKDEKALEEYL 568 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 13/139 (9%) Query: 551 IASLLLTFF----YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKK 606 I++L + + + L+ + +PP+ + G+ + + +L+ Sbjct: 681 ISTLDMGLLGSADARHIDQLVARTRDIYATPPVLQRKDGSMEL-----AGPRALLDAIFA 735 Query: 607 HGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTK 666 G+ + + R+KGLGEM A QL ET +DAN R+LL+V +N D +LMG + Sbjct: 736 AGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDAT----DADGLFARLMGDE 791 Query: 667 ADERFKFIQERASFIDDVG 685 + R FIQE A + ++ Sbjct: 792 VEPRRDFIQENALNVANLD 810 >gi|134294131|ref|YP_001117866.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4] gi|134137288|gb|ABO53031.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4] Length = 824 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 234/594 (39%), Positives = 338/594 (56%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RGI +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + +F EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M +++E+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 587 Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|94676498|ref|YP_588600.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219648|gb|ABF13807.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 802 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 232/574 (40%), Positives = 341/574 (59%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQEILV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + ++V DNGRGIP + H + +S E+I+T LHAGGKFD+++Y++SGGLHGVGI Sbjct: 62 TIHEDNSISVQDNGRGIPTDIHIE-ERRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGI 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L + + R+ I+ Q + G+P SPL+ + GT I F P IF +K Sbjct: 121 SVVNALSEKLELFIKREGHIYYQIYYNGVPQSPLKIVGN-SIQTGTTIRFWPSFIIFTNK 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L + + ++L+ + + + E F++ GG+K +++ +N Sbjct: 180 KEFQYEILAQRLRELSFLNSGLSISLHDKRNS-------QLEHFHYQGGIKAFIKYLNKN 232 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDEGGTHESGLRVAL 338 + I + IF +K G VE A+ W + I + N I GGTH G R A+ Sbjct: 233 KKPIHTNIFYIAVDKCGI---NVEIAMQWNDSCQENIYCFTNNIPQPNGGTHLVGFRTAM 289 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I Y + K I DD + ILSV + +P+F+ QTK KLVS + + V Sbjct: 290 TRTINYYIDKEGYNKKNKIIATGDDAREGLIAILSVKVPDPKFSSQTKDKLVSSEVKAVV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 E+ + + F YL++ P +A ++ +I+ + R RK RE RK + LPGKLAD Sbjct: 350 ESLMNERFIEYLLEYPSDARIIINKIIDAARAREAARKAREINKRKGILDLAGLPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + E+++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ +I Sbjct: 410 CQERDPKFAEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSNEIAA 469 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ LGC + LRY +IIMTDADVDG+HI +LLLTFFY+ M D+I + H+F+ Sbjct: 470 LITVLGCGIGRNEYNLDKLRYHTIIIMTDADVDGSHIRTLLLTFFYRYMPDIIHRGHIFI 529 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL+++ +G + Y DE+ ++ G Sbjct: 530 AQPPLYKVRKGKQEQYIKDEDAMEQYQTSIAIKG 563 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 L+ P + I +G + + ++++E K + + + R+KGLGEM +QL ET M Sbjct: 698 LMQPNTY-IKRGEHHKFVQN---FEQVVEWLAKESRHGLVVQRYKGLGEMNPTQLWETTM 753 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D R +LRV + + LMG + R FIQE A + ++ Sbjct: 754 DPANRNILRVTVKDAIM----ADQLFTTLMGDAVEPRRVFIQENALKVKNID 801 >gi|298252232|ref|ZP_06976035.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM 44963] gi|297546824|gb|EFH80692.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM 44963] Length = 687 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 220/695 (31%), Positives = 349/695 (50%), Gaps = 24/695 (3%) Query: 2 TDDSIDLFSTLPPQS-QGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 +D FS L +S E+++ + + A + A+ Y A+ I++LEG+ +R Sbjct: 5 SDLQQQEFSFLATRSIDEDREEIQHTHSVESKAPKARKQAA--YSAADIQVLEGISAIRH 62 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T L HL E +DNA+DE +AGY I V++D G++TV D GRG+P + Sbjct: 63 RPGMYIGSTSTSGLVHLIWEALDNAVDEAVAGYGKQIWVTIDREGWVTVRDEGRGLPFDP 122 Query: 121 HP-KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 + +ILT H+GGKF Y+ +GGLHGVG +V+NALS++L +T+ + Sbjct: 123 MLYQGDYLPAATVILTVPHSGGKFAEGAYKTAGGLHGVGSTVINALSEKLELTIWKDGQC 182 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 FSQ FSRG L P + + GT++ + D IF + + ++ AYL+ Sbjct: 183 FSQLFSRGTAL-PHQIEPCDPKLHGTQLRWAYDRAIFDPDVYYSLEAIDSRLKAAAYLNR 241 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 V + + E + +Y GL Y++ + + G ++K Sbjct: 242 GVTIHF---EAWDESLSEQVRRVYYSREGLPDYVRDLSSGANTPMFKHVLGIAKEKD--N 296 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAEL---TQNKRAI 355 +VE A+ + SY N + T +GG HESG + ALT+ I YA +N+ Sbjct: 297 VSVEVALQPTTGYKTALYSYANAVRTRDGGVHESGFKAALTKVINDYAIKLSVIKNRERD 356 Query: 356 SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 + + ++SV + P+F GQTK +L + + V + + + + +N + Sbjct: 357 GFKPEVIQQGLNVVISVKLTNPQFQGQTKDRLNNAPVEGIVRSIVDEGLKDWFEKNSVAG 416 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG-----KLADCSQNIAHGTELFIVE 470 + L+ + + + R + E+ R + + K C+ + A ELFIVE Sbjct: 417 KEWLKRIQQMQKARNEAQLVEELARAGTKKNNEMIDTSLSKKFLRCNTSDASRAELFIVE 476 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE 530 GDSAGGSA Q R QA+L L+GK LNVA A + I N++I ++ LG TR + Sbjct: 477 GDSAGGSAGQGRFSEFQAILKLKGKPLNVAKADLKSIVENEEIRTIINVLGTGTRDVFDI 536 Query: 531 EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVY 590 L++ +VII TDADVDG HI LLLT F+QE DLIEQ H+++ PPL+ + K + Sbjct: 537 SRLKFNRVIIATDADVDGLHIQCLLLTLFHQEFSDLIEQGHVYIACPPLYSVKYKGKVHW 596 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLN 650 ++E +++ + +E RFKGLGEM +L++T D +RTL RV + + Sbjct: 597 LLNDEARERFVRTHADA--QNLEFKRFKGLGEMNPKELRDTTFDPARRTLKRVTMEDGVL 654 Query: 651 SLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + K + + A+ R F+ E + I ++ Sbjct: 655 AAKLVTELMED---KNAERRRVFLAEHSRKIKELD 686 >gi|125525330|gb|EAY73444.1| hypothetical protein OsI_01322 [Oryza sativa Indica Group] Length = 647 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 229/652 (35%), Positives = 356/652 (54%), Gaps = 43/652 (6%) Query: 45 DASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGN 104 D S +LE L+ VR RPGMYIG T + LHHL E++DNA+DE AGYA I Sbjct: 27 DGGSWSVLEALDGVRTRPGMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKI------- 79 Query: 105 GFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST--YEISGGLHGVGISVV 162 P + HP+ KS +E +LT +HAGGKF S Y +SGGLHGVG+SVV Sbjct: 80 ------------PTDIHPQ-TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVV 126 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE---KVRNKRGTRITFRPDPKIFGDK 219 NALS+ L VTV R + +SRG ++ L + + +++GTRI F PD IF Sbjct: 127 NALSEALEVTVWRDGKEYRLNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTT 186 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + A+L+ + + + E + E+ + GGL Y++ + Sbjct: 187 MDFDFNTIAGRIRELAFLNPELTIALTKE----EDDLQVQHNEYCYAGGLVEYVKWLNTD 242 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALT 339 + + I + E G V + + Y N+I T +GGTH GL+ +LT Sbjct: 243 KKSLHDPI-AFRKEMDGIT-VDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLT 300 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I +A+ ++ + IS+ + + I++V + PEF GQTKT+L + + +R VE Sbjct: 301 RTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVE 360 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456 ++++ YL +P +L + + L ++ V K+ ++ LPGKLADC Sbjct: 361 QSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADC 420 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + + +E+FIVEGDSAGGSAKQ R+R QA+LPLRGKILN+ + N++I +L Sbjct: 421 ASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNL 480 Query: 517 VQALGCRTRSQYREED-LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + + ++ LRY K++I+TDADVDGAHI +LLLTFF++ L ++ +++ Sbjct: 481 IVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVG 540 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PPL+++ +G ++ Y +D+ ++++ F + I RFKGLGEM+ +QL ET MD Sbjct: 541 VPPLYKVERGKQAHYCYDDADLKELVNTFPTN--ASYHIQRFKGLGEMMPAQLWETTMDP 598 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 +R L ++++ + + LMGT+ D R + IQ AS + + + Sbjct: 599 ERRMLKQLKVED----AAEANVVFSSLMGTRVDVRKQLIQNAASMVNLEHLD 646 >gi|327398178|ref|YP_004339047.1| DNA gyrase subunit B [Hippea maritima DSM 10411] gi|327180807|gb|AEA32988.1| DNA gyrase, B subunit [Hippea maritima DSM 10411] Length = 787 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 226/561 (40%), Positives = 329/561 (58%), Gaps = 16/561 (2%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A I++L+GLE VR RP MYIGGT + LHHL EV+DN++DE +AGY + I V ++ Sbjct: 4 YTAEDIKVLKGLEAVRKRPAMYIGGTSVEGLHHLVYEVVDNSIDEAMAGYCDTINVYINE 63 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 + +TV DNGRGIPV+ HP + ++LTTLHAGGKFDN Y++SGGLHGVGISVVN Sbjct: 64 DNSITVEDNGRGIPVDIHP-VEKIPAVTLVLTTLHAGGKFDNKNYKVSGGLHGVGISVVN 122 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L V V R+ I++Q+F +G P + LE + + GT ITF PD IF F Sbjct: 123 ALSEWLVVEVKREGKIYTQRFEKGTPTTDLEVIGQTKE-SGTVITFLPDKGIFE-ITEFS 180 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 LLK + A+L+ +K + + + E F + GL ++++ + ++ + Sbjct: 181 YDILLKRLRELAFLNKGIKISLTDRR-------TDKSETFQYDKGLVSFVEYLSKTKNKL 233 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGGTHESGLRVALTRGI 342 E + VE A + + I ++ N+I T EGG H S + LT+ I Sbjct: 234 FDEPVYFNITEGSVL---VELAFLYTDTYSSTIYTFANSINTAEGGVHLSAFKSVLTKTI 290 Query: 343 KKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALR 401 +YA+ K + DD+ V +LSV + P+F GQTKTKLV+ D + ++ L Sbjct: 291 NRYAKANNLVKGNVVFNGDDVREGIVAVLSVRLPNPQFEGQTKTKLVNTDIKNVIQTKLY 350 Query: 402 DPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNI 460 + + Y ++P A +++ V R RK +E V RKT LPGKLADC + Sbjct: 351 EKLNEYFEEHPQIAKLIIDKVSRAFNAREAARKAKELVRRKTVFESKGLPGKLADCQEKD 410 Query: 461 AHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQAL 520 ELF+VEGDSAGGSAKQAR+R QA+LPL+GKILN +K+ +++I +++ A+ Sbjct: 411 PLKAELFLVEGDSAGGSAKQARDRVYQAILPLKGKILNTERTNLKKVLESEEIRNIITAI 470 Query: 521 GCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLF 580 G + +D+RY K+IIMTDADVDG+HI +L+LT F++ +LIE ++++ PPL+ Sbjct: 471 GSGVNESFNIDDVRYHKIIIMTDADVDGSHIQTLILTLFFRYFRELIENGYIYIAQPPLY 530 Query: 581 RITQGTKSVYAHDEEHKQKIL 601 R G K Y DE+ ++ L Sbjct: 531 RCKIGKKEFYIKDEKQMKEFL 551 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 8/109 (7%) Query: 577 PPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 PP F+ + + + +E+ K G +EI R+KGLGEM QL ET MD Sbjct: 686 PP-FKAKVKGELIEFKTIKDMLSFIEDRAKKG---LEIQRYKGLGEMNPEQLWETTMDPK 741 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V I+ ++ N LMG R +FI++ A F+ + Sbjct: 742 TRRLLQVTISD----AEEADRVFNMLMGNNPQLRKEFIEKNAKFVKHLD 786 >gi|157414325|ref|YP_001481581.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116] gi|157385289|gb|ABV51604.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116] Length = 769 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKANNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|77414294|ref|ZP_00790453.1| DNA gyrase, B subunit [Streptococcus agalactiae 515] gi|77159673|gb|EAO70825.1| DNA gyrase, B subunit [Streptococcus agalactiae 515] Length = 577 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 232/587 (39%), Positives = 342/587 (58%), Gaps = 20/587 (3%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 MRPGMYIG T ++ LHHL E++DN++DE +AG+A I+V ++ + +TVVD+GRGIPV+ Sbjct: 1 MRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPVD 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 K + +E + T LHAGGKF Y++SGGLHGVG SVVNALS +L V V + I Sbjct: 61 IQEK-TGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKI 119 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 Q++ RG+ ++ LE + GT + F PDP+IF + FD +L K Q A+L+ Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 ++ S +E E +++ GG+ +Y++ EN+ +I E G Sbjct: 179 GLRISISDKREGQEVEKE-----YHYEGGIGSYVEFINENKEVIFENPIYTDGELDGI-- 231 Query: 300 GTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 +VE A+ + + S+ N I T EGGTHE G R ALTR I YA+ + + + Sbjct: 232 -SVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDN 290 Query: 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEAT 416 + +D+ ++SV P+F GQTKTKL + + + + F+ +L++NP A Sbjct: 291 LTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAK 350 Query: 417 KLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAG 475 K++E I S+ R+ ++ RE +K+ + LPGKLADCS N A ELFIVEGDSAG Sbjct: 351 KIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAG 410 Query: 476 GSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRY 535 GSAK RNR QA+LP+RGKILNV A +KI N++I L A+G + + +RY Sbjct: 411 GSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKVRY 470 Query: 536 EKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV-YAHD- 593 +K++IMTDADVDGAHI +LLLT Y+ M ++E ++++ PP++ + G++ Y Sbjct: 471 QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKAYIQPG 530 Query: 594 ---EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 EE ++ L+ + G+ K + R+KGLGEM L ET MD Sbjct: 531 VNQEEELRQALDTYS-SGRSKPTVQRYKGLGEMDDHXLWETXMDPET 576 >gi|329946872|ref|ZP_08294284.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526683|gb|EGF53696.1| DNA gyrase, B subunit protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 750 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 234/745 (31%), Positives = 347/745 (46%), Gaps = 97/745 (13%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P+ N+++ +Y A + +LEGLE VR RPGMYIG TD++ L H E++DNA+DE + G Sbjct: 2 PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + I V++ +G + V DNGRG+PV+ P + +E++ T LHAGGKF +Y +G Sbjct: 62 HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------------- 193 GLHGVG SVVNAL++ + V V R ++ F RG P Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSSGRGPSSPFTEFTKASE 180 Query: 194 -EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249 KVR GTR+ + DP+IF +DAA L + ++L + + Sbjct: 181 LRVIGKVRRGVSGTRVRYWADPQIFPRPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240 Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271 ++ + E F GG Sbjct: 241 AEAIAASNTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300 Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314 ++ + S+ + TG+ + TV+ A+ W Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCTVDVALRWGIGYET 360 Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368 S+ N I T GGTH +G ALT+ ++K E + + DD+M Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKITSKDGRVEKDDIMAGLTA 420 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424 +++V + EP+F GQTK L + ++ V + +A L E ++ Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTTLLTSSKRDLKTQARALEEKIVG 480 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 R+ R +E RKTA+ LP KLADC + +ELFIVEGDSA G+AK ARN Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARN 540 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV A + N + ++Q +G + + E RY KVI+MTD Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLESARYGKVILMTD 600 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597 ADVDGAHI +LLLT F++ M +IE +F PPL RI + + +Y + +E Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 L ++ G+ E R+KGLGEM A QL ET M+ RTL R+ + + + + + Sbjct: 661 ITTLRRLERSGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQVM-EAES 719 Query: 658 SINKLMGTKADERFKFIQERASFID 682 LMG+ + R FI E A +D Sbjct: 720 IFELLMGSSVEPRRDFIVEGARDVD 744 >gi|254515866|ref|ZP_05127926.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3] gi|219675588|gb|EED31954.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3] Length = 804 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 227/577 (39%), Positives = 345/577 (59%), Gaps = 20/577 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 AS++YD S I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ Sbjct: 2 SDASESYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCGK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I +++ + ++V D+GRGIP + H S E+ILT LHAGGKFD++TY++SGGLHG Sbjct: 62 ILITIHPDESVSVQDDGRGIPTDMHE--EGVSAAEVILTVLHAGGKFDDNTYKVSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+EL +T+ R + Q++ G+P LE + +K GT I F+P + F Sbjct: 120 VGVSVVNALSEELWLTIWRAGRRYEQRYVHGVPQGSLEDVGEA-DKTGTLIRFKPSAETF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L K + A+L+ V+ ++ E + +++ GGLK ++ Sbjct: 179 TNI-EFEFEILAKRLRELAFLNSGVEILLEDERSGKE-------DRYFYEGGLKAFVDYL 230 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ + + GT VE A+ W + I Y N I +GGTH +G R Sbjct: 231 NRNKTPMHKAFHFQADTEDGT---AVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFR 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 288 SALTRTLNAYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE + + F YL+++P EA ++ +++ + R RK R RK A+ LPGK Sbjct: 348 TVVEQTMNNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + A +E+++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + + Sbjct: 408 LADCQEKDAALSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLASVE 467 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + LV ALGC + ++ + LRY ++IIMTDADVDG+HI +LLLTFF+++M +LI++ + Sbjct: 468 VGTLVTALGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGY 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +++ PPL++I +G + Y D+ + L G Sbjct: 528 VYIAQPPLYKIAKGKQHQYLKDDAALAEFLTAQALDG 564 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 +G K++ D + LE K I R+KGLGEM QL ET MD R +L+ Sbjct: 708 QRGEKTLQTQD---FVEGLEWLMAEAKKGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQ 764 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V I+ + + LMG + + R +FI++ A ++ ++ Sbjct: 765 VTIDDAM----LADEIFTTLMGDQVEPRREFIEQNALYVSNLD 803 >gi|326578064|gb|EGE27924.1| DNA gyrase subunit B [Moraxella catarrhalis O35E] Length = 819 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNYYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|291615236|ref|YP_003525393.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1] gi|291585348|gb|ADE13006.1| DNA topoisomerase IV, B subunit [Sideroxydans lithotrophicus ES-1] Length = 652 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 251/663 (37%), Positives = 373/663 (56%), Gaps = 39/663 (5%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 Y+ +S ++L GLEPVR RPGMY T+ ++ +H+ +EV+DNA DE +AG+A I V+ Sbjct: 3 TYNEASFKVLRGLEPVRQRPGMY---TNLESPNHIIAEVVDNACDEALAGHAKNIFVTAH 59 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD---NSTYEISGGLHGVGI 159 +G ++V D+GRGIPV H K +S +E+ T LH+GGKFD + Y+ +GGLHGVG+ Sbjct: 60 ADGSVSVKDDGRGIPVGIH-KEEGRSVVEVAFTVLHSGGKFDKESDGAYKFAGGLHGVGV 118 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGD 218 +V NALS ++ VTV R+ +F G+ PL K +N+ GT + P+PK F Sbjct: 119 AVTNALSKQVEVTVFREGGQHELRFVDGVAEKPLAKVGTCPKNQTGTMVRAWPNPKYFDA 178 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 + A+L +SKA L V + +K K +P GL+ YL L Sbjct: 179 PN-VNLAQLELSLRSKAVLLPGVTITLNLEKTGETKSWT-------YPDGLRGYLAEALS 230 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENP-EITSYCNTILTDEGGTHES 332 L + + K +KG G E WA+ W E SY N I T GGTHE+ Sbjct: 231 EFELATPILLQEKFTRKGDTTGFAEGEGASWALTWSAEGNVVRESYVNLIPTPAGGTHEA 290 Query: 333 GLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 GLR + +K +AE + + + ++ +D+ A +LS + +P+F GQTK KLVS D Sbjct: 291 GLRDGVFNAVKAFAEIHSLLPKGVKLVPEDVFSRASFVLSAKVLDPQFQGQTKEKLVSRD 350 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPG 451 A R V + ++DP + +L ++ A K++E I++++ R+R ++ E + +++ L PG Sbjct: 351 ALRLVSSMIKDPLELWLNEHLEPAKKIVELAIQQAQARMRSAQKVEKKKGSSVAVL--PG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DCS + TELF+VEGDSAGGSAKQ RN+ QAVLPLRGK+LN +++ N Sbjct: 409 KLTDCSSSDPSRTELFLVEGDSAGGSAKQGRNKEFQAVLPLRGKVLNTFEVEKDRLFANN 468 Query: 512 QIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +I D+ A+G + D LRY ++IM DADVDG+HI++LLLT FY+ Y ++E Sbjct: 469 EIHDIAVAIGVDPHAPTDSVDLSGLRYNAILIMADADVDGSHISTLLLTLFYRHFYRVVE 528 Query: 569 QKHLFLISPPLFRIT---QGTKS---VYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620 +++ PPLFRI G K +YA +E IL+ +K +G ISRFKGL Sbjct: 529 AGKIYIAQPPLFRIDVPAHGKKQASKIYALNEGEMTGILDRLRKEKIREGSWSISRFKGL 588 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679 GEM QL +T ++ + R L V+ + S K T N LMG +A R +++ + Sbjct: 589 GEMSPEQLWDTTLNPDTRRALCVKADSA--SFKATMSIFNMLMGKQEASTRRAWLEYHGN 646 Query: 680 FID 682 ++ Sbjct: 647 EVE 649 >gi|206603337|gb|EDZ39817.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 818 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 222/573 (38%), Positives = 332/573 (57%), Gaps = 14/573 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + + + Y A IR+LEGLE VR+RPGMYIG T LHHL E++DN++DE +AG+ Sbjct: 2 SSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHC 61 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V++ + +TV DNGRGIP H + +S E++LT LHAGGKF+N+ Y++SGGL Sbjct: 62 SEIHVTIHPDRSVTVADNGRGIPTGMHAEQ-KRSAAEVVLTVLHAGGKFNNNLYKVSGGL 120 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L + + + I Q + +G P +PL + +RGT I F PD Sbjct: 121 HGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPDAPLAVFGETA-QRGTIIRFWPDMT 179 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 I F L + A+L+ + ++ + E E F+F GG+++++ Sbjct: 180 IMET-DQFSFDTLSHRFRELAFLNPVLTIHLKEEETLRE-------ETFHFEGGVQSFVS 231 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGL 334 EN+ + +F KT + G+ + V + EN + + N I T EGGTH G Sbjct: 232 FLNENKKTLHDVLFFRKTLEDGS-QFEVAFQYQESTENETVLGFANNIHTREGGTHVRGF 290 Query: 335 RVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 R A+T+ I ++ Q + + +D+ GI+SV I P+F GQTK KL S Sbjct: 291 RTAITKTINRFIREKQLNKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAG 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 +E+ L + ++P+ A K+ E + ++ R RK ++ RK + LPGKL Sbjct: 351 AMESFLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG-SEKIRNNQQ 512 ADC ++ +EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILNV + EK N + Sbjct: 411 ADCQESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDE 470 Query: 513 IMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + L+ A+GC + E+ LRY K+IIMTDADVDGAHI +LLLTFF++ M LI+ + Sbjct: 471 VRALITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQF 530 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +++ PPL++++ G + Y ++E Q + E Sbjct: 531 VYIAQPPLYKVSYGRQERYLLNDEALQAYILEL 563 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Query: 580 FRITQG--TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 F + +G + V LE + K+ I R+KGLGEM QL ET MD ++ Sbjct: 717 FVLKRGAEGEEVRFRSPRELLSFLET---PVRQKLSIQRYKGLGEMNPEQLWETTMDPSR 773 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V I + + LMG + R +FI++ A + ++ Sbjct: 774 RTLLKVSIPDYV----EADRVFTTLMGEQVAPRREFIEKHALDVANLD 817 >gi|254295377|ref|YP_003061400.1| DNA gyrase subunit B [Hirschia baltica ATCC 49814] gi|254043908|gb|ACT60703.1| DNA gyrase, B subunit [Hirschia baltica ATCC 49814] Length = 813 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 240/595 (40%), Positives = 347/595 (58%), Gaps = 30/595 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + + Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 1 MTEPTQNAEYGAGSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ + V+L +G ++ DNGRG+PV+ HP S E+I+T LHAGGKFD+++Y++SGG Sbjct: 61 ADYVTVTLHPDGSASISDNGRGVPVDLHP-TEGISAAEVIMTQLHAGGKFDDNSYKVSGG 119 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEK-------VRNKRGTR 206 LHGVG+SVVNALS+ L +++ R +S +F+ G+ +PLE R + GT Sbjct: 120 LHGVGVSVVNALSEWLQLSINRNGKRYSMRFTHGVSDAPLEIVGDAPMRPDGTRPETGTE 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F P F F L + A+L+ VK + ++ P + + Sbjct: 180 VRFLPSTDTFT-MVEFKRETLEHRLRELAFLNSGVKIVFRDER-----PAEPIETILEYE 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325 GG+ +++ ++R+ I E + EK G TV+ A+ W + E + N I Sbjct: 234 GGVVAFVEHLDKSRTKILPEAIQARAEKDG---MTVDAALQWNDGYHENVLCFTNNIPQR 290 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR I KYA+ T K + I DD +LSV + +P+F+ QT Sbjct: 291 DGGTHLAGFRAALTRVINKYAQATGVAKKEKVDISGDDAREGLTCVLSVKVPDPKFSSQT 350 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + V+N + + + +NP EA +++ +++ + R R+ R+ RKT Sbjct: 351 KDKLVSSEVRPIVDNLMTEALSTWFEENPNEAKIIMQKIVQAAAAREAMRRARDLARRKT 410 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV A Sbjct: 411 ALDITSLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNRENQAVLPLRGKILNVERA 470 Query: 503 GSEKIRNNQQIMDLVQALGC--------RTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 +++ + Q+ L+ ALG ++ + LRY K+IIMTDADVDGAHI +L Sbjct: 471 RFDRMLGSDQVGTLITALGASIGRRSEENPNEGFQPDKLRYHKIIIMTDADVDGAHIRTL 530 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609 LLTFFY++M +LIE+ HLF+ PPL++ +G S Y D+ L E G+ Sbjct: 531 LLTFFYRQMPELIERGHLFIAQPPLYKAEKGRSSRYLKDDAEMDAFLIEEGTSGE 585 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L K G I+I R+KGLGEM QL ET +D N R+LL+V + + Sbjct: 731 SLLSAVLKSGAKGIKIQRYKGLGEMNPDQLWETTLDRNARSLLQVRVEH----ADTADEM 786 Query: 659 INKLMGTKADERFKFIQERASFID 682 KLMG + R +FIQE A + Sbjct: 787 FTKLMGDVVEPRREFIQENALEAE 810 >gi|326575517|gb|EGE25442.1| DNA gyrase subunit B [Moraxella catarrhalis 101P30B1] Length = 819 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|182677812|ref|YP_001831958.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633695|gb|ACB94469.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 817 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 234/583 (40%), Positives = 339/583 (58%), Gaps = 21/583 (3%) Query: 30 PDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDE 88 + + + Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE Sbjct: 2 DEPASAPLTNEEQAYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDE 61 Query: 89 VIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTY 148 +AG+A + V+L+ +G +TV D+GRGIP + H + S E+I+T LHAGGKFD ++Y Sbjct: 62 ALAGHATRVTVTLNADGSVTVTDDGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFDQNSY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKR 203 ++SGGLHGVG+SVVNALS L + + R F G+ S L + KR Sbjct: 121 KVSGGLHGVGVSVVNALSTWLKLRIWRDGKEHEITFEHGVAKSSLAVVGPAPEIDGKPKR 180 Query: 204 GTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 GT +TF P P+ F F A + + A+L+ V+ + + K EE Sbjct: 181 GTEVTFLPSPETFS-MVDFTYATIEHRLRELAFLNSGVRILLTDARGAEVKV-----EEL 234 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322 ++ GGL+ +++ +S + + E+ G TVE A+ W + E ++ N I Sbjct: 235 HYEGGLEAFVRFLDRAKSPLLDQPILIAGERDGI---TVEAALWWNDSYHEHVLAFTNNI 291 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII--SDDLMISAVGILSVFIREPEFA 380 +GGTH +GLR ALTR + YA+ + + + DD +LSV + +P+F+ Sbjct: 292 PQRDGGTHLTGLRSALTRQVTGYADRSGLIKREKVDLAPDDCREGLTCVLSVKVPDPKFS 351 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 QTK KLVS + + VE+ + D + ++P EA ++ V+E ++ R RK RE Sbjct: 352 SQTKEKLVSSEVRPVVESLVNDKLGQWFEEHPQEARSIIGKVVEAAQAREAARKARELTR 411 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RK A+ LPGKLADC + ELF+VEGDSAGGSAKQ RNR QAVLPLRGKILNV Sbjct: 412 RKGALDVANLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNV 471 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 A +K+ ++Q+I L+ ALG + + LRY K+IIMTDADVDG+HI +LLLTF Sbjct: 472 ERARFDKMLSSQEIGTLITALGTGIGHEDFNPDKLRYHKIIIMTDADVDGSHIRTLLLTF 531 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 F+++M LIE+ HL++ PPL+++ +G+ Y DE ++ L Sbjct: 532 FFRQMRPLIERGHLYIAQPPLYKVKRGSSEQYLKDERAREDYL 574 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 599 KILEEFKKHGKGKI-EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 +L+ G+ I ++ R+KGLGEM QL ET +D R+LL+V I D D Sbjct: 733 DLLDAVMAAGQKGISQMQRYKGLGEMNPDQLWETTLDREARSLLQVRI----KEGDDADD 788 Query: 658 SINKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ A + ++ Sbjct: 789 IFVKLMGDIVEPRREFIQDNALNVHNLD 816 >gi|326571722|gb|EGE21735.1| DNA gyrase subunit B [Moraxella catarrhalis BC8] Length = 819 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|326562313|gb|EGE12639.1| DNA gyrase subunit B [Moraxella catarrhalis 103P14B1] Length = 819 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 223/581 (38%), Positives = 335/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|326560704|gb|EGE11072.1| DNA gyrase subunit B [Moraxella catarrhalis 46P47B1] gi|326563089|gb|EGE13362.1| DNA gyrase subunit B [Moraxella catarrhalis 12P80B1] gi|326574364|gb|EGE24307.1| DNA gyrase subunit B [Moraxella catarrhalis CO72] Length = 819 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|109896336|ref|YP_659591.1| DNA gyrase, B subunit [Pseudoalteromonas atlantica T6c] gi|109698617|gb|ABG38537.1| DNA gyrase subunit B [Pseudoalteromonas atlantica T6c] Length = 806 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 220/574 (38%), Positives = 344/574 (59%), Gaps = 18/574 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V Sbjct: 4 ENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTNINV 63 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G ++V D+GRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 64 KIHTDGSVSVKDDGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS +L + + R + Q++ G+P PLE + + GT I F P + F Sbjct: 123 SVVNALSRKLQIMIRRAGEVHEQEYQHGVPQKPLEVIGE-SDTTGTSIRFWPSEETFTGI 181 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + ++L+ V +++ +K+ F + GG++ +++ +N Sbjct: 182 -EFHYDILAKRLRELSFLNSGVSIILEDERD-------GKKDHFMYEGGIRAFVEYLNQN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + ++F +++ +VE A+ W + + + N I +GG+H +G R AL Sbjct: 234 KTPVHQQVFHFNSQRDD--GISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGAL 291 Query: 339 TRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + + E K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 292 TRTLNTFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAV 351 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E + + + +L++NP + ++ +I+ + R RK RK A+ LPGKLAD Sbjct: 352 ETVMGEKLNEFLLENPSASKIIIGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLAD 411 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 412 CQEKDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 471 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y E LRY ++IIMTDADVDG+HI +LLLTFFY++M ++IE+ ++++ Sbjct: 472 LITALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYI 531 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 PPL++ +G + Y D++ K L Sbjct: 532 AQPPLYKTKKGKQEQYLKDDDSLTKYLTAIALDN 565 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + + K L K G+ I R+KGLGEM QL ET MD R +L Sbjct: 709 VKRNDKVKAISSFAEGLDWLMAESKKGQY---IQRYKGLGEMNPGQLWETTMDPASRRML 765 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V++ + LMG + R FI+E A + ++ Sbjct: 766 QVKVEDAI----AADQLFTTLMGDHVEPRRAFIEENALRVANLD 805 >gi|296112234|ref|YP_003626172.1| DNA gyrase subunit B [Moraxella catarrhalis RH4] gi|295919928|gb|ADG60279.1| DNA gyrase subunit B [Moraxella catarrhalis RH4] Length = 819 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 223/581 (38%), Positives = 335/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L + + R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|298290587|ref|YP_003692526.1| DNA gyrase subunit beta [Starkeya novella DSM 506] gi|296927098|gb|ADH87907.1| DNA gyrase, B subunit [Starkeya novella DSM 506] Length = 812 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 233/580 (40%), Positives = 337/580 (58%), Gaps = 17/580 (2%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMD 87 A S ++Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+D Sbjct: 2 ADSDNAATPSSNGEDYGAQSIQVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID 61 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147 E +AGYA+ + V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKF+ ++ Sbjct: 62 EALAGYADEVTVTLNADGSVTVTDNGRGIPTDIHAE-EGVSAAEVIMTQLHAGGKFNQNS 120 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGTR 206 Y++SGGLHGVG+SVVNALS L +T+ R +F G +PL K +RGT Sbjct: 121 YKVSGGLHGVGVSVVNALSTTLDLTIWRNGLEHHIRFRHGDAEAPLAVKGPAPEGRRGTM 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF P P F FD A L + A+L+ V+ + + K EE + Sbjct: 181 VTFVPSPDTFT-HIEFDYATLEHRLRELAFLNSGVRIVLTDARHPEVKR-----EEMMYE 234 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325 GG++ ++Q ++ + + + EK G VE A++W + E + N I Sbjct: 235 GGVEAFVQYLDRSKQALLPKPIVIRAEKDGI---AVECAMSWNDSYHENVLCFTNNIPQR 291 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 + GTH +G ALTR + Y+E + K + +D +LSV + +P+F+ QT Sbjct: 292 DRGTHFTGFAAALTRQVIGYSERSGIAKKEKVEPTGEDCREGLTAVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VE + + +L ++P E+ L+ V+E + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVEALVNEALGSWLEEHPAESKSLVTKVVEAAAAREAARKARELTRRKN 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + +ELFIVEGDSAGGSAK RNR+ QA+LPLRGKILNV A Sbjct: 412 PLDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKMGRNRAFQAILPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ +++QI L+ ALG + LRY K+IIMTDADVDG+HI +LLLTFF++ Sbjct: 472 RFDKMLSSEQIGTLITALGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M DL+++ H+++ PPL+++T+G Y DE + L Sbjct: 532 QMPDLLDRGHVYIAQPPLYKVTRGKSEQYLKDERSLEDYL 571 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 8/96 (8%) Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 +G ++ + + + G+ I + R+KGLGEM A QL ET +D N R+LL+ Sbjct: 718 RKGNDTLVFGPMDLFDAVTDA----GRKGIALQRYKGLGEMNAEQLWETTLDVNARSLLQ 773 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678 V++ + D D N+LMG + R +FIQ+ A Sbjct: 774 VKV----KEVADADDLFNRLMGDVVEPRREFIQDNA 805 >gi|57236917|ref|YP_178032.1| DNA gyrase subunit B [Campylobacter jejuni RM1221] gi|57165721|gb|AAW34500.1| DNA gyrase, B subunit [Campylobacter jejuni RM1221] Length = 769 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 249/660 (37%), Positives = 363/660 (55%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ V+ + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|326571823|gb|EGE21829.1| DNA gyrase subunit B [Moraxella catarrhalis BC7] Length = 819 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|85713968|ref|ZP_01044957.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A] gi|85699094|gb|EAQ36962.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A] Length = 813 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 239/567 (42%), Positives = 339/567 (59%), Gaps = 14/567 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y A SIR+L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A +EV L Sbjct: 19 EYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVIL 78 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + + +TV D+GRGIPV+ H K S E+I+T LHAGGKFD ++Y++SGGLHGVG+SV Sbjct: 79 NADNSVTVRDDGRGIPVDIH-KGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L + + R++ +F+ G L+PL+ KRGT +TF + F Sbjct: 138 VNALSSKLILRIWRKDKEHLIEFANGDALAPLKVVGDANGKRGTEVTFLASTETFTSV-E 196 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 +D A L + A+L+ V S + E+ E+ + GG+ +++ N+ Sbjct: 197 YDFATLEHRLRELAFLNSGVNILLSDMRHAVERR-----EQMMYEGGVVEFVKYLDRNKK 251 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTR 340 + ++ + E G +VE A+ W + E + N I +GGTH +G R ALTR Sbjct: 252 AMVADPIMIRAEMNGI---SVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTR 308 Query: 341 GIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 + YA+ K I++ DD +LSV + +P+F+ QTK KLVS + + VEN + Sbjct: 309 QVNGYADAMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVI 368 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + + ++P EA ++ V+E + R RK RE RK A+ LPGKLADC + Sbjct: 369 NEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQER 428 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +ELFIVEGDSAGGSAKQ RNR QAVLPLRGKILNV A +K+ +++QI L+ A Sbjct: 429 DPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITA 488 Query: 520 LGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 LG + + LRY K+I+MTDADVDGAHI +LLLTFF+++M LIE HL++ PP Sbjct: 489 LGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPP 548 Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFK 605 L+++T+G Y DE + L E Sbjct: 549 LYKVTRGKSERYLKDERALEDYLIETG 575 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + E G+ + + R+KGLGEM QL ET +DA +R+LL+V+I + + D Sbjct: 731 SLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDAGERSLLQVKI----KEVDEADDI 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ+ + +V Sbjct: 787 FTKLMGDVVEPRREFIQDNSLSA-NVD 812 >gi|162606284|ref|XP_001713657.1| DNA gyrase subunit B [Guillardia theta] gi|13794577|gb|AAK39952.1|AF165818_160 DNA gyrase subunit B [Guillardia theta] Length = 684 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 238/650 (36%), Positives = 353/650 (54%), Gaps = 29/650 (4%) Query: 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108 I +LEGLEPVR RPG++IG T K HHL E++DN++DE +AG+ ++V ++ + +T Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVT 108 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDE 168 + DNGRGIP + HP NK+ LE +LT LHAGGKF Y++SGGLHGVG+SVVN LS+ Sbjct: 109 IRDNGRGIPTDLHP-ITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEY 167 Query: 169 LHVTVARQNTIFSQKFSRGIPLSPLEKKE-KVRNKRGTRITFRPDPKIFGDKAGFDAARL 227 L++ R +F RG +S K GT I F+PD +IF + FD+ + Sbjct: 168 LNINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVI 227 Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287 A+L+ +K + K F GG+ Y+ N+ + + I Sbjct: 228 GGRLNELAFLNSNLKLLLEDRRSKIIKS-----SLFLHDGGIMEYINEMTINKKRLHNPI 282 Query: 288 FTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAE 347 K + + + + + I S+ N I T EGGTH G + +T+ + ++ Sbjct: 283 ILSKIFNN--SQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSK 340 Query: 348 LTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF- 404 + SI + + +++V EPEF GQ K+KL + D + VEN +++ Sbjct: 341 KKIKSKEKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGE 400 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHG 463 H++ N +LE I +K +E V +K+ + + LPGKL+DCS+ Sbjct: 401 IHFIENNSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQF 460 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +E+FIVEGDSAGGSAKQAR+R QA+LPLRGKI+N+ +KI NN +I L+ ALG Sbjct: 461 SEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLG 520 Query: 524 TRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 R + +LRY K+IIMTDADVDGAHI +LLLTFFY+ +LI++ +++ PPL++I Sbjct: 521 VRGNDEDLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKI 580 Query: 583 T------QGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDAN 636 + Y + E + I++ + I RFKGLGEM+ QL +T M Sbjct: 581 ENKKNKNLDKNTQYCYSEGELEYIIQSSHFNK----NIQRFKGLGEMMPEQLWKTTMSPE 636 Query: 637 KRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 R L +++++ K LMG+K ER KFIQ +AS I + + Sbjct: 637 MRILKKIKLSD----AKRADKIFEVLMGSKVPERKKFIQIQASLIK-IDS 681 >gi|299065057|emb|CBJ36218.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum CMR15] Length = 842 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 229/594 (38%), Positives = 344/594 (57%), Gaps = 36/594 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 + + S +Y A+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 6 KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ I V++ + ++V+DNGRGIP P +S EI++T LHAGGKFD ++Y Sbjct: 66 GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192 ++SGGLHGVG+S VN LS L +TV R + + +F+RGIP + Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHNMEFARGIPQNRLLEQAEAPDGKMVEVS 185 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 + +KRGT + F D +IF + + L K + ++L+ V + + Sbjct: 186 PLRMSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311 ++E F F GG+K +++ +N+S++ IF EK G VE ++ W + Sbjct: 242 ----TGKEENFAFSGGVKGFVEYINKNKSVLHPTIFYATGEKDGV---GVEVSMQWNDGF 294 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 N ++ + N I +GGTH +GLR A+TR I KY + K + DD+ + Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCV 354 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV + EP+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAR 414 Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547 +LPL+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTDADVD Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 G+HI +LLLTFFY++M ++IE+ H+++ PPL++I G + Y D+ L Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 ++ +G + A + + + I R+KGLGEM QL ET MD + Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPEQLWETTMDVTQ 797 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V+I + LMG + R FI+ A ++ Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841 >gi|237806780|ref|YP_002891220.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187] gi|237499041|gb|ACQ91634.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187] Length = 805 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 231/575 (40%), Positives = 346/575 (60%), Gaps = 18/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVMDNSIDETLAGHCTDIV 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + +G ++V DNGRGIPV+ H K +S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 ARIHEDGSVSVRDNGRGIPVDMH-KEEGRSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD+L +T+ R I+ Q + G P +PL GT I F P IF D Sbjct: 121 VSVVNALSDKLLLTIQRNGNIYQQTYFLGEPDAPLAIIGTCEG-TGTEIRFWPSLSIFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L + + ++L+ V +++ E + F++ GG++ +++ + Sbjct: 180 VT-FRYEILARRFRELSFLNSGVSIRLIDERDGRE-------DHFHYEGGIRAFVEYLNQ 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I + F ++ +VE A+ W + + + N I +GGTH +G R A Sbjct: 232 NKTPIHQKAFYFDLARED--GISVEVAMQWNDAYQENVYCFTNNIPQRDGGTHLAGFRSA 289 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y + K S DD ++SV + +P+F+ QTK KLVS + + Sbjct: 290 LTRTLNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTA 349 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLA 454 VE A+ + D YL++NP EA ++ +I+ + R RK R RK A+ LPGKLA Sbjct: 350 VEQAMGEKLDEYLLENPGEAKIIVGKIIDAARAREAARKAREMTRRKGALDIAGLPGKLA 409 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++Q++ Sbjct: 410 DCQERDPALSELYLVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMISSQEVG 469 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R +Y + +RY VIIMTDADVDGAHI +LLLTFFY++M ++IE+ +++ Sbjct: 470 TLITALGCGIGRDEYNPDKMRYHNVIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVY 529 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DEE + G Sbjct: 530 IAQPPLYKVKKGKQEQYIKDEESLLEYQTTLALDG 564 Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K ++ L+ GK + I R+KGLGEM QL ET MD R +L Sbjct: 708 LKRGEKVRPVTS---FEEALQILLDEGKRGLYIQRYKGLGEMNPEQLWETTMDPMTRRML 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R FI+ A + ++ Sbjct: 765 QVTIEDGM----AADQLFATLMGDNVEPRRAFIESNALKVANLD 804 >gi|161523183|ref|YP_001578195.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|189348956|ref|YP_001944584.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|221201812|ref|ZP_03574849.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M] gi|221207682|ref|ZP_03580690.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2] gi|221214572|ref|ZP_03587542.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1] gi|160340612|gb|ABX13698.1| DNA gyrase, B subunit [Burkholderia multivorans ATCC 17616] gi|189332978|dbj|BAG42048.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|221165462|gb|EED97938.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1] gi|221172528|gb|EEE04967.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2] gi|221178232|gb|EEE10642.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M] Length = 824 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 236/594 (39%), Positives = 342/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++VVDNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP++ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQVIGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + +S + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LLTFFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQG 587 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD N R LLRV+I + Sbjct: 738 DFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|46201803|ref|ZP_00054300.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Magnetospirillum magnetotacticum MS-1] Length = 638 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 313/568 (55%), Positives = 417/568 (73%), Gaps = 4/568 (0%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y A I +LEGLEPVR RPGMYIGGTD++ALHHL +EV+DN+MDE +AG+A IE Sbjct: 10 PKATEYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNSMDEAVAGHAGWIE 69 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + L +G TV DNGRGIPV+ HPK+P+KS LE+ILTTLH+GGKF Y++SGGLHGVG Sbjct: 70 LELAVDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVG 129 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD + V VAR ++SQ+FSRG+PL PLEK V+N+RGT + F PD +IFG+ Sbjct: 130 VSVVNALSDAMTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRRGTTVIFHPDAQIFGE 189 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-EIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 +A L +M +SKAYL V+ W CD I + IP ++ +FPGGL +L+ L Sbjct: 190 RAQLRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPAEDTLHFPGGLTDFLKAVL 249 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT--SYCNTILTDEGGTHESGLR 335 + R L++ ++F G G +EWA+AW +++ E +YCNT+ T EGGTHE+G R Sbjct: 250 KERPLVTKDVFNGTAPLSDDM-GQLEWAVAWPDDDEEGFVNTYCNTVPTPEGGTHEAGFR 308 Query: 336 VALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 ALT+G++ Y E+ NK+A I ++D+M+ A ++S+FIR+P+F GQTK KL S +A R Sbjct: 309 NALTKGLRAYGEMAGNKKAGQITAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEATRL 368 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLAD 455 VENA++D FDH+L + A LL +IE++E+R RRR+ +E+NRKT ++LRLPGKLAD Sbjct: 369 VENAVKDHFDHWLSGDKASAAALLTRLIEKAEDRARRRQAKEMNRKTPTKRLRLPGKLAD 428 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 CS+++ GTELF+VEGDSAGGSAK RNR QA+LPLRGKILNVASA ++K+R NQ++ D Sbjct: 429 CSRSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQELKD 488 Query: 516 LVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 L++ALGC R Y +E LRYEK+IIMTDADVDGAHIASLL+TFFYQEM DLI HL+L Sbjct: 489 LMEALGCGARDSYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPDLIRNGHLYLA 548 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEE 603 PPL+R+ G +Y D+ HK+++L+ Sbjct: 549 LPPLYRLAHGQTVIYGRDDAHKEELLKT 576 >gi|307746967|gb|ADN90237.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni M1] gi|315931303|gb|EFV10272.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 327] Length = 769 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|313681133|ref|YP_004058871.1| DNA gyrase subunit b [Sulfuricurvum kujiense DSM 16994] gi|313153993|gb|ADR32671.1| DNA gyrase subunit B [Sulfuricurvum kujiense DSM 16994] Length = 771 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 226/565 (40%), Positives = 334/565 (59%), Gaps = 16/565 (2%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T + LHHL EV+DN++DE +AG+ + I V+L Sbjct: 2 ENYGASNIKVLKGLEAVRKRPGMYIGDTGHRGLHHLIYEVVDNSIDEAMAGHCDTITVTL 61 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 NG V DNGRGIP + HP S ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 62 TKNGTAIVSDNGRGIPTDMHP-TEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L +T+ R+ F Q F GIP PL R + T I F PDP IF + Sbjct: 121 VNALSSDLKMTIHREGQSFEQNFKCGIPQEPLAITGTTRKRG-TTIEFFPDPSIFTETII 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ R+ + ++ A ++F GG+ ++ + ++ Sbjct: 180 FDYDYLAKRFRELAYLNPRITIIFKDERNGASNT-------YHFEGGISQFVTDVNK-KT 231 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRG 341 +++S + + + + ++ ++ ++ N I T GGTHE+G R LTR Sbjct: 232 VVASPFAFSEKIEDIEMDIAIMYNDSYDDK---TFTFVNNINTPNGGTHEAGFRAGLTRV 288 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I Y + ++ + + +D+ + ++SV + EP+F GQTK KL + + V+ Sbjct: 289 ISNYNKQNGNAKEKDVPLTGEDVSEGLICVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKV 348 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQ 458 + Y +NP++A +++ + + R +K RE RK A+ LPGKLADC Sbjct: 349 TYEKLTKYFEENPLQAKAIVQKALMAARGREAAKKARELTRRKDAMTVGTLPGKLADCQS 408 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +KI +++I +++ Sbjct: 409 KDPAISELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMIT 468 Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578 ALGC ++ EE LRY K+IIMTDADVDG+HI +LLLTFF++ + ++E +L+L PP Sbjct: 469 ALGCGIGEEFNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYLPKIVENGYLYLAQPP 528 Query: 579 LFRITQGTKSVYAHDEEHKQKILEE 603 L+R +G K +Y D+ L E Sbjct: 529 LYRYKKGKKEIYFKDDRVMNAFLIE 553 Score = 127 bits (318), Expect = 7e-27, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 E ++L + + K I R+KGLGEM QL ET M R LLR+ I + + Sbjct: 683 EGDLLELLTQITDYAKKGSYIQRYKGLGEMNPEQLWETTMTPENRVLLRITIEDAETAGE 742 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 N MG + R +I+ A + + Sbjct: 743 S----FNLFMGDDVEPRRNYIETHAKDVKHLD 770 >gi|256821232|ref|YP_003145195.1| DNA gyrase subunit B [Kangiella koreensis DSM 16069] gi|256794771|gb|ACV25427.1| DNA gyrase, B subunit [Kangiella koreensis DSM 16069] Length = 808 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 226/580 (38%), Positives = 351/580 (60%), Gaps = 17/580 (2%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 SENNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V DNGRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 YVTIHSDNSVSVRDNGRGIPTEMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+EL +T+ R + Q + G+P +PLE GT I F+P K F Sbjct: 121 GVSVVNALSEELKLTIRRAGKRYEQIYVHGVPQAPLEVVGDA-ETTGTEIRFKPSDKTFT 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + + L K + ++L+ V + ++ +++ F + GG+K +++ Sbjct: 180 NT-EYHYDILAKRLRELSFLNSGVGIRLADERS-------GKQDHFMYEGGIKAFVEYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I ++F E++ TVE A+ W + I + N I +GGTH +G R Sbjct: 232 SKKTPIHEKVFHFTHERE-EDGVTVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRA 290 Query: 337 ALTRGIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTRG+ + E K ++ DD ++SV + +P+F+ QTK KLVS + + Sbjct: 291 ALTRGLNNFMENEGYNKKGKVNTTGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKT 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE A+ + +L++NP EA ++ +I+ + R RK R RK A+ LPGKL Sbjct: 351 AVEQAMGEHLKDFLLENPGEAKSVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 ADCQEKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEV 470 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC + + + RY ++IIMTDADVDGAHI +LLLTFFY+++ LIE+ ++ Sbjct: 471 GTLITALGCGIGREEFDADKTRYHRIIIMTDADVDGAHIRTLLLTFFYRQVPQLIERGYI 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 ++ PPL+++ +G + Y D++ + L + + Sbjct: 531 YIAQPPLYKVKKGKQEQYLKDDDALENYLTQTALNNTELY 570 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K E ++ L+ + I R+KGLGEM QL ET MD R +L Sbjct: 711 VKRGEKIQEI---ESFKEALDWLMSEARRGQAIQRYKGLGEMNPGQLWETTMDPAGRRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + + R +FI+ A + ++ Sbjct: 768 QVTIEDAV----AADQLFTTLMGDQVEPRREFIENNALSVSNLD 807 >gi|153951349|ref|YP_001397276.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei 269.97] gi|152938795|gb|ABS43536.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 769 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 247/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNKEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NP+EA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPVEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQVHAKDVKHLD 768 >gi|86153959|ref|ZP_01072161.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842497|gb|EAQ59710.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 769 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|94311457|ref|YP_584667.1| DNA topoisomerase IV subunit B [Cupriavidus metallidurans CH34] gi|93355309|gb|ABF09398.1| DNA topoisomerase IV, subunit B [Cupriavidus metallidurans CH34] Length = 690 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 242/688 (35%), Positives = 351/688 (51%), Gaps = 37/688 (5%) Query: 20 SEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFS 79 ++ P + + A++++ Y SSIR+L+GLEPV+ RPGMY T H+ Sbjct: 12 PAADGRASHFPQNDSMASKTS--QYSESSIRVLKGLEPVKQRPGMY---TRTDNPLHVVQ 66 Query: 80 EVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA 139 EVIDNA DE + GY I V+L +G ++V D+GRGIPV HP+ +EI+ T LHA Sbjct: 67 EVIDNASDEALGGYGTEILVTLHRDGSISVEDDGRGIPVGIHPE-EQVPVVEIVFTRLHA 125 Query: 140 ---GGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--- 193 K Y SGGLHGVG+SV NAL+ L VTV R + + F G ++ Sbjct: 126 GGKFDKGKGGAYAFSGGLHGVGVSVTNALATRLDVTVWRDGAVSTLTFEHGGEVTRPLAT 185 Query: 194 EKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAE 253 K E+ K GTR+ PD K F A A L ++ +SKA L VK +K + Sbjct: 186 RKIERGEKKSGTRVQVWPDAKYFDS-AAIPMAELQRLLRSKAVLLPGVKVTLVLEKTGEQ 244 Query: 254 KYGIPEKEEFYF------PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIA 307 E+ + G + E + G+ + A Sbjct: 245 TVWQYEQGLKGYLVEALAQGSGAELVIPMFEGEHFADPDKNAGEEGFAEGEGASWVVAWT 304 Query: 308 WCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISA 366 E P SY N I T GGTHESGLR L +K + E+ + + ++S+D+ A Sbjct: 305 -EEGAPVRESYVNLIPTPAGGTHESGLREGLFLAVKSFIEMHSLQPKGVKLMSEDVFARA 363 Query: 367 VGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERS 426 +LS + +P+F GQ K +L S DA R V R + +L + KL E VI ++ Sbjct: 364 SFVLSAKVLDPQFQGQIKERLNSRDAVRLVSTFSRPALELWLNHHVDFGKKLAELVIRQA 423 Query: 427 EERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSN 486 + R R ++ E + + + L PGKL DC E+F+VEGDSAGGSAK R++ Sbjct: 424 QARTRAAQKVEKKKGSGVAVL--PGKLTDCESTDVERNEIFLVEGDSAGGSAKMGRDKEF 481 Query: 487 QAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTD 543 QA+LPLRGK+LN +++ N ++ D+ A+G E D LRY K+ I++D Sbjct: 482 QAILPLRGKVLNTWETERDRLFANNEVHDIAVAIGVDPHGPDDEPDLSNLRYGKICILSD 541 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHK 597 ADVDGAHI LLLT F++ L+ ++ + PPLFR+ +G K +YA DE Sbjct: 542 ADVDGAHIQVLLLTLFFRHFPKLMANGNVCVARPPLFRVDAPARGKKPAQKLYALDEGEL 601 Query: 598 QKILEEFKKHG--KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + I ++ K G +G +ISRFKGLGEM A QL ET M+ + R LL V + + T Sbjct: 602 EAIQDKLLKDGVKEGAWQISRFKGLGEMSAGQLWETTMNPDTRRLLPVSL--GEFDMPQT 659 Query: 656 QDSINKLMGT-KADERFKFIQERASFID 682 +N LMG +A +R +++E+ + ++ Sbjct: 660 VTMMNMLMGKGEASQRRSWLEEKGNEVE 687 >gi|167644129|ref|YP_001681792.1| DNA gyrase subunit B [Caulobacter sp. K31] gi|167346559|gb|ABZ69294.1| DNA gyrase, B subunit [Caulobacter sp. K31] Length = 830 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 233/611 (38%), Positives = 348/611 (56%), Gaps = 29/611 (4%) Query: 14 PQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-K 72 PQ S ++ S A + + +Y A SI++L+GL+ VR RPGMYIG TD+ Sbjct: 8 PQDDTSGDR---LTTADGSEMAAPEVMTGDYSADSIKVLKGLDAVRKRPGMYIGDTDDGS 64 Query: 73 ALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEI 132 LHH+ EV+DNA+DE +AG+A +EV L+ +G +TV D+GRGIPV+ H + S E+ Sbjct: 65 GLHHMVYEVVDNAIDEALAGHATKVEVILNADGSVTVTDDGRGIPVDIH-EGEGVSAAEV 123 Query: 133 ILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP 192 I+T LHAGGKFD ++Y++SGGLHGVG+SVVNALSD L + + R + +F RG ++ Sbjct: 124 IMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTS 183 Query: 193 LEKKEKV----------RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242 L + GT +TF P + F FD L + A+L+ V Sbjct: 184 LAQTGDSPVRADGPKAGTTLTGTEVTFYPSLETFA-FIEFDRKTLEHRLRELAFLNSGVT 242 Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302 + ++ P +E+ ++ GG++ +++ + ++ + + K V Sbjct: 243 IYFRDLRDA-----EPWEEKLHYEGGIEAFVRHLDKAKTPLLKMPIVIRGRKDKV---EV 294 Query: 303 EWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIIS 359 + A+ W + + + N I +GGTH S R ALTR I YAE + K +++ Sbjct: 295 DLALWWNDSYHEHMLCFTNNIPQRDGGTHLSAFRGALTRIITNYAESSGITKKEKVNVGG 354 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D +LSV + +P+F+ QTK KLVS + + VE +++ + ++P EA ++ Sbjct: 355 EDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVQEGLASWFEEHPNEAKAIV 414 Query: 420 EWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 + E + R RK RE RK+A+ LPGKLADCS+ +E+FIVEGDSAGGSA Sbjct: 415 SKIAEAAAAREAARKARELTRRKSALDITSLPGKLADCSERDPAKSEIFIVEGDSAGGSA 474 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEK 537 KQARNR NQAVLPLRGKILNV A +K+ ++ QI L+ ALG + +RY K Sbjct: 475 KQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIGTLITALGAGIGRDDFNADKVRYHK 534 Query: 538 VIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHK 597 +++MTDADVDGAHI +LLLTFFY++M +LIE+ ++++ PPL++ +G S Y D+ Sbjct: 535 IVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKAAKGKSSRYLKDDFEM 594 Query: 598 QKILEEFKKHG 608 L + G Sbjct: 595 DAFLVDEGVDG 605 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + I R+KGLGEM QL ET +D RTLL+V +N D D Sbjct: 748 DLLGAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDVEARTLLQVRVNH----ADDADDM 803 Query: 659 INKLMGTKADERFKFIQERASFID 682 ++LMG + R +FIQE A + Sbjct: 804 FSRLMGDLVEPRREFIQENALDAE 827 >gi|291612475|ref|YP_003522632.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1] gi|291582587|gb|ADE10245.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1] Length = 809 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 231/582 (39%), Positives = 341/582 (58%), Gaps = 33/582 (5%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 SDNYD SSI+ LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I+V Sbjct: 2 SDNYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIKV 61 Query: 100 SLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 + G+ ++V DNGRGIP+ P +S EI+LT LHAGGKF+ ++Y++SGGLHG Sbjct: 62 IIHGDNSISVSDNGRGIPIGIKFDDKHEPKRSAAEIVLTVLHAGGKFNQNSYKVSGGLHG 121 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKF------------SRGIPLSPLEKKEKVRNKRG 204 VG+S VN LS+ L +T R F +F G+ +SP+ + + RG Sbjct: 122 VGVSCVNGLSEWLKLTTYRDGKKFGLEFVRGAVKDRHVEVQNGVDVSPVRELGESNK-RG 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F D +IFG F L K + ++L+ VK + + E F Sbjct: 181 TEVHFLADKEIFGLV-EFHYEILAKRLRELSFLNNGVKIELIDQR-------TGKSENFA 232 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 + GG++ +++ ++++++ + F EK TV+ A+ W + + + N I Sbjct: 233 YSGGVRGFVEYMNKSKTVLHPKCFEATGEKDNI---TVDVAMQWNDSYSEVVQCFTNNIP 289 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 +GGTH +GLR+A+TR I KY E + K + DD+ +LSV + +P+F+ Sbjct: 290 QRDGGTHMTGLRMAMTRVINKYIEDNELAKKAKVDTTGDDMREGLTCVLSVKVPDPKFSS 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK KLVS + Q V + +L++NP++A + +IE + R RK RE+ R+ Sbjct: 350 QTKDKLVSSEVQPAVNEVVTQKLTDFLLENPVDAKIICGKIIEAARARDAARKARELTRR 409 Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + LPGKLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV Sbjct: 410 KGVLDGIGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVE 469 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFF 559 A EK+ ++Q+I L+ LG + + LRY ++IIMTDADVDGAHI +LLLTFF Sbjct: 470 RARFEKLISSQEIATLITVLGTGIGKEEYNADKLRYHRIIIMTDADVDGAHIRTLLLTFF 529 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 Y++M +L+E+ H+++ PPL++I QG Y DE + + Sbjct: 530 YRQMPELVERGHVYIAQPPLYKIKQGRDERYLKDEHELKTYM 571 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++ +E + K + I R+KGLGEM QL ET MD R LL+V I + Sbjct: 724 FKQAIEWLLEEAKKGVSIQRYKGLGEMNPEQLWETTMDVKNRILLKVRIEDAVG----AD 779 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI++ A + ++ Sbjct: 780 EIFTTLMGDVVEPRRAFIEKNALGVKNLD 808 >gi|86150547|ref|ZP_01068771.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152360|ref|ZP_01070570.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|121612557|ref|YP_999722.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|167004699|ref|ZP_02270457.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|315123619|ref|YP_004065623.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85838999|gb|EAQ56264.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840657|gb|EAQ57909.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|87249029|gb|EAQ71991.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|315017341|gb|ADT65434.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 769 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|170782024|ref|YP_001710356.1| DNA topoisomerase IV subunit B [Clavibacter michiganensis subsp. sepedonicus] gi|169156592|emb|CAQ01743.1| putative DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus] Length = 692 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 230/697 (32%), Positives = 335/697 (48%), Gaps = 63/697 (9%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 A+ +Y A + +LEGLE VR RPGMYIG TD + L H E+IDN++DE + G+ +LI+V Sbjct: 2 AASDYSARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGHGDLIDV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 L +G + V D RG+PV+ PK S +E++ T LHAGGKF + +Y SGGLHGVG Sbjct: 62 RLHPDGSVEVRDTARGVPVDIEPK-TGLSGVEVVFTKLHAGGKFGSGSYASSGGLHGVGA 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN------------------ 201 SVVNALS+ L V V R ++ F RG P ++ E + Sbjct: 121 SVVNALSERLDVEVDRGGKTYAMSFRRGEPGIFEDQGEASPDAPFRPFTSGSELRVVGKV 180 Query: 202 ---KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 GTRI + D +IF A F LL + A+L + + P Sbjct: 181 RKGVTGTRIRYWADRQIFTRGASFLTEELLGRARQTAFLVPGLSIDIKDLR-----GEQP 235 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE----------------KKGTHRGTV 302 +E F F GG+ ++ + L + G + T V Sbjct: 236 VRESFRFDGGIAEFVDHLAVDAPLTDTWRLEGSGTFTETVPVLTDGGAMVPTELTRECAV 295 Query: 303 EWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAI---SII 358 + A+ W S+ N I T +GGTH++G L + ++ E K + + Sbjct: 296 DIALRWGTGYDTRFKSFVNIIATPKGGTHQAGFEAGLLKFVRAQVEANARKLKVGTDKLE 355 Query: 359 SDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL----VQNPIE 414 DD++ +L+V EP+F GQTK L + + V ++ ++ + Sbjct: 356 KDDVLAGLTAVLTVRFPEPQFEGQTKEVLGTPAVRAIVSQVVQKAMADRFASPRREDKAQ 415 Query: 415 ATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDS 473 LLE V+ + R+ R +E RK A+ LP KL DC N +ELFIVEGDS Sbjct: 416 TAVLLEKVVGEMKSRISARTHKETQRRKNALESSSLPAKLVDCRSNDVANSELFIVEGDS 475 Query: 474 AGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDL 533 A G+AK AR+ QA+LP+RGKILNV A + +N + ++Q LG + + Sbjct: 476 ALGTAKLARDSEYQALLPIRGKILNVQKASLPDMLSNTECASIIQVLGAGSGRTFDLSAA 535 Query: 534 RYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTK 587 RY K+IIM+DADVDGAHI +LLLT F++ M +I++ +F PPL R+ ++ Sbjct: 536 RYGKIIIMSDADVDGAHIRTLLLTLFFRYMRPMIDEGRVFAAVPPLHRVVVMNPGSKPND 595 Query: 588 SVYAHDEEHKQKILEEFKKHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 +Y + E +L + K+ GK + I R+KGLGEM A QL T MD R Sbjct: 596 VIYTYSERELAAVLAQAKRQGKRYQDPIQRYKGLGEMGADQLATTTMD----RRNRTLRR 651 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 ++ + LMG R +FI + A + D Sbjct: 652 VRVDDAEAATRMFELLMGNDVAPRKEFIIDGAGSVRD 688 >gi|6580765|gb|AAF18271.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4] Length = 822 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A D+YDA SI++L GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AGY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149 +L+++++ +G ++V DNGRGIP HP+ S E+I+T LHAGGKFDN+ Y+ Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALSD L +TV R +F G+ + PL+ +KRGTR+ F Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F F+ +L + A+L+ V+ + + EK ++ GG+ Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328 +++ ++ + E ++ +EW ++ ++ + N I +GG Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH + R ALTR + YA+ + K + + DD+ I+SV + +P+F+ QTK K Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445 LVS + ++ +E+ + D +L +NP A +++ +I+ + R ++ RE+ R+ + Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC + +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN + + Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++++ L+QALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY+ M + Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +IE HL++ PPLF++ + VY DE L Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ E G + ISR+KGLGEM QL ET +D R++L+VE+ + Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADGI 784 Query: 659 INKLMGTKADE 669 ++LMG + Sbjct: 785 FSRLMGDVVEP 795 >gi|325068640|ref|ZP_08127313.1| DNA topoisomerase IV subunit B [Actinomyces oris K20] Length = 750 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 232/745 (31%), Positives = 346/745 (46%), Gaps = 97/745 (13%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 P+ N+++ +Y A + +LEGLE VR RPGMYIG TD++ L H E++DNA+DE + G Sbjct: 2 PSSENKTSRGDYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIVDNAVDEALEG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 + + I V++ +G + V DNGRG+PV+ P + +E++ T LHAGGKF +Y +G Sbjct: 62 HGDDISVTVHDDGSIEVRDNGRGVPVDIEP-SSGLTGVELVYTKLHAGGKFGGGSYGAAG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL------------------- 193 GLHGVG SVVNAL++ + V V R ++ F RG P Sbjct: 121 GLHGVGASVVNALAERMDVEVDRGGKTYAMSFHRGEPGIFDDSAGRGPSSPFTGFTKSSE 180 Query: 194 -EKKEKVR-NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDK-- 249 KVR GTR+ + DP+IF +DAA L + ++L + + Sbjct: 181 LRVIGKVRRGVTGTRVRYWADPQIFPKPTEYDAAALRARLRQTSFLVPGLTLRLEDKRPE 240 Query: 250 --------------------------------------EIAEKYGIPEKEEFYFPGGLKT 271 ++ + E F GG Sbjct: 241 AEAIAASTTPAADAGETDDAVHEVTLRAAAKNATENRGDLFDTGDDDGVEVFQALGGTAD 300 Query: 272 YLQTKLENRSLISSEIFTGKTE-----------------KKGTHRGTVEWAIAWCEENPE 314 ++ + S+ + TG+ + V+ A+ W Sbjct: 301 FVDFLASDGSVTDTFRLTGEGTYTETVQQLDRASGHLRPVEVERTCMVDVALRWGIGYDT 360 Query: 315 IT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL-----TQNKRAISIISDDLMISAVG 368 S+ N I T GGTH +G ALT+ ++K E + + DD+M Sbjct: 361 TERSFVNIIATPMGGTHLTGFEQALTKVLRKRIEADSRALKLTAKDGRVEKDDIMAGLTA 420 Query: 369 ILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFD----HYLVQNPIEATKLLEWVIE 424 +++V + EP+F GQTK L + ++ V + +A L E ++ Sbjct: 421 VITVRVPEPQFEGQTKEVLGTGPVRQIVSKVVERELTALLTSSKRDLKTQARALEEKIVG 480 Query: 425 RSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARN 483 R+ R +E RKTA+ LP KLADC + +ELFIVEGDSA G+AK AR+ Sbjct: 481 EMRARVSARLHKEITRRKTALETSSLPAKLADCRSDDVAASELFIVEGDSALGTAKNARD 540 Query: 484 RSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTD 543 QA+LP+RGKILNV A + N + ++Q +G + + E RY KVI+MTD Sbjct: 541 SEFQALLPIRGKILNVQKASQADMLRNVECSAIIQVVGAGSGRTFDLEAARYGKVILMTD 600 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI------TQGTKSVYAHDEEHK 597 ADVDGAHI +LLLT F++ M +IE +F PPL RI + + +Y + +E Sbjct: 601 ADVDGAHIRTLLLTLFFRYMRPMIEAGRVFAAVPPLHRIEVSGSGRRKKEIIYTYSDEEL 660 Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 L ++ G+ E R+KGLGEM A QL ET M+ RTL R+ + + + + + Sbjct: 661 VTTLRRLERAGRSFKEPQRYKGLGEMDAHQLAETTMEPQHRTLRRITLGDEAQIM-EAES 719 Query: 658 SINKLMGTKADERFKFIQERASFID 682 LMG+ + R FI E A +D Sbjct: 720 VFELLMGSSVEPRRDFIVEGARDVD 744 >gi|294010033|ref|YP_003543493.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] gi|292673363|dbj|BAI94881.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] Length = 835 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 221/587 (37%), Positives = 342/587 (58%), Gaps = 26/587 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 S N S+ Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE + Sbjct: 2 SEESQNNPNSNAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146 AG+ + I ++L+ +G ++V DNGRGIP + H K S E+I+T LHAGGKF D++ Sbjct: 62 AGHCDRILITLNPDGSVSVEDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205 Y++SGGLHGVG+SVVNALS+ L + + R +F+ G ++PL+ K+GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPEGKKGT 180 Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 ++TF P + F + FD +L + A+L+ V+ + + +K Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEIE- 239 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317 ++ GG+ +++ N+ + + + +EW ++ + Sbjct: 240 ----LFYEGGIAAFVKWLDRNKQPLMPDPIAISGSRDDVTIDVALEWNDSY---YENVLC 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N I +GGTH + R ALTR + YA+ + K +S+ +D+ I+SV + Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYADKSGLLKKEKVSLTGEDMREGLTAIVSVKLP 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +P+F+ QTK KLVS + ++ +E+ + D +L +NP +++ VI+ + R +K Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPQHGRMIVQKVIDAAAAREAAKKA 412 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE+ R+ + LPGKLADC + +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G Sbjct: 413 RELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A +++ +++++ L+QA+G R + E LRY K++IMTDADVDGAHI +L Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LLTFFY++M +IE HL++ PPL++ T+G VY +E + L Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYL 579 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++LE G+ + I R+KGLGEM A QL ET +D + R++LRVE+ + + Sbjct: 752 ELLEAILTAGRKGLAIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADVADEI 807 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ+ A + ++ Sbjct: 808 FTRLMGDVVEPRREFIQDNALNVANLD 834 >gi|207727476|ref|YP_002255870.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2] gi|300702377|ref|YP_003743977.1| DNA gyrase subunit B [Ralstonia solanacearum CFBP2957] gi|206590713|emb|CAQ56325.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2] gi|299070038|emb|CBJ41323.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum CFBP2957] Length = 842 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 + + S +Y A+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 6 KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ I V++ + ++V+DNGRGIP P +S EI++T LHAGGKFD ++Y Sbjct: 66 GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192 ++SGGLHGVG+S VN LS L +TV R + F+RGIP + Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGKMVEVS 185 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 + +KRGT + F D +IF + + L K + ++L+ V + + Sbjct: 186 PLRTSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311 ++E+F F GG+K +++ +N++++ +F + EK G VE ++ W + Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGV---GVEVSMQWNDGF 294 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 N ++ + N I +GGTH +GLR A+TR I KY + K + DD+ + Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACV 354 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV + EP+F+ QTK KLVS + + VE + +L++ P +A + ++E + R Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAR 414 Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547 +LPL+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTDADVD Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 G+HI +LLLTFFY++M ++IE+ H+++ PPL++I G + Y D+ L Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 ++ +G + A + + + I R+KGLGEM QL ET MD + Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPGQLWETTMDVTQ 797 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V+I + LMG + R FI+ A ++ Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841 >gi|83749736|ref|ZP_00946713.1| DNA gyrase subunit B [Ralstonia solanacearum UW551] gi|207741917|ref|YP_002258309.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609] gi|83723588|gb|EAP70789.1| DNA gyrase subunit B [Ralstonia solanacearum UW551] gi|206593303|emb|CAQ60230.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609] Length = 842 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 + + S +Y A+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 6 KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ I V++ + ++V+DNGRGIP P +S EI++T LHAGGKFD ++Y Sbjct: 66 GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192 ++SGGLHGVG+S VN LS L +TV R + F+RGIP + Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGKMVEVS 185 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 + +KRGT + F D +IF + + L K + ++L+ V + + Sbjct: 186 PLRTSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311 ++E+F F GG+K +++ +N++++ +F + EK G VE ++ W + Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGV---GVEVSMQWNDGF 294 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 N ++ + N I +GGTH +GLR A+TR I KY + K + DD+ + Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACV 354 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV + EP+F+ QTK KLVS + + VE + +L++ P +A + ++E + R Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAR 414 Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547 +LPL+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTDADVD Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 G+HI +LLLTFFY++M ++IE+ H+++ PPL++I G + Y D+ L Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYL 588 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 9/108 (8%) Query: 581 RITQG---TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 ++ +G + A + + + I R+KGLGEM QL ET MD + Sbjct: 740 KVRRGTGDKQREQAVTD--FHAAITWLLAEAERGISRQRYKGLGEMNPGQLWETTMDVTQ 797 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V+I + LMG + R FI+ A ++ Sbjct: 798 RRLLKVQIEDAI----AADQIFTTLMGDDVEPRRNFIETNALVARNID 841 >gi|88597733|ref|ZP_01100966.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218561696|ref|YP_002343475.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297098|sp|O87667|GYRB_CAMJE RecName: Full=DNA gyrase subunit B gi|88190037|gb|EAQ94013.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359402|emb|CAL34184.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925306|gb|ADC27658.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni IA3902] gi|315928458|gb|EFV07770.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930330|gb|EFV09418.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 305] Length = 769 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I DD+ + I+SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 578 PLFR----ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAM 633 PL+ I K ++ ++LE+ + + K I R+KGLGEM QL ET M Sbjct: 661 PLYEEASYIFDKIKDRSLEFDKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTM 720 Query: 634 DANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D + R LL++ I + D+ N MG + + R +IQ A + + Sbjct: 721 DPSVRRLLKITIED----AQSANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|187927115|ref|YP_001897602.1| DNA gyrase subunit B [Ralstonia pickettii 12J] gi|241661628|ref|YP_002979988.1| DNA gyrase subunit B [Ralstonia pickettii 12D] gi|309780180|ref|ZP_07674931.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA] gi|187724005|gb|ACD25170.1| DNA gyrase, B subunit [Ralstonia pickettii 12J] gi|240863655|gb|ACS61316.1| DNA gyrase, B subunit [Ralstonia pickettii 12D] gi|308920883|gb|EFP66529.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA] Length = 842 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 224/598 (37%), Positives = 347/598 (58%), Gaps = 36/598 (6%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87 + + + +++YDA+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++D Sbjct: 2 TEEQKPQSTPAEANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 61 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFD 144 E +AG+ I+V++ + ++V+DNGRGIP P +S EI +T LHAGGKF+ Sbjct: 62 EALAGHCTEIQVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFN 121 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKE------- 197 ++Y++SGGLHGVG+S VN LS + VTV + + +F++G+P + L + Sbjct: 122 QNSYKVSGGLHGVGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQM 181 Query: 198 ---------KVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCD 248 +KRGT + F D +IF + + L K + ++L+ V + Sbjct: 182 VEVSPLRVLGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIRLTDQ 240 Query: 249 KEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW 308 + ++E+F F GG+K +++ +N++++ IF EK G VE ++ W Sbjct: 241 R-------TGKEEDFAFSGGVKGFVEYINKNKTVLHPTIFFAAGEKDGV---AVEVSMQW 290 Query: 309 CEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMIS 365 + ++ + N I +GGTH +GLR A+TR I KY + K + DD+ Sbjct: 291 NDAYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREG 350 Query: 366 AVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIER 425 +LSV + EP+F+ QTK KLVS + + VE + +L++ P++A + ++E Sbjct: 351 LTCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEA 410 Query: 426 SEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNR 484 + R RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R Sbjct: 411 ARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDR 470 Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543 QA+LPL+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTD Sbjct: 471 KFQAILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTD 530 Query: 544 ADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ADVDG+HI +LLLTFFY++M ++IE+ H+++ PPL++I G + Y D+ L Sbjct: 531 ADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 588 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%) Query: 581 RITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKR 638 ++ +GT K + + + + R+KGLGEM QL ET MD +R Sbjct: 740 KVRRGTGDKVRE-QNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWETTMDVTQR 798 Query: 639 TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV+I + LMG + R FI+ A ++ Sbjct: 799 RLLRVQIEDAI----AADQIFTTLMGDDVEPRRNFIESNALVARNID 841 >gi|325528071|gb|EGD05283.1| DNA gyrase subunit B [Burkholderia sp. TJI49] Length = 824 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 341/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP++ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVLEKIDGEEVSPMQIIGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + +S + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKSNLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPSKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M +++E+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQG 587 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 16/120 (13%) Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLA 625 LI+ + I +G +S + ++ + + R+KGLGEM Sbjct: 720 LIQAGAV---------IKRGERS---MAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNP 767 Query: 626 SQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 QL ET MD R LLRV+I + LMG + + R FI+ A ++ Sbjct: 768 EQLWETTMDPTVRRLLRVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|149926944|ref|ZP_01915203.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105] gi|149824496|gb|EDM83714.1| DNA topoisomerase IV subunit B [Limnobacter sp. MED105] Length = 653 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 241/665 (36%), Positives = 360/665 (54%), Gaps = 40/665 (6%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 Y SSIR+L+GLEPV+ RPGMY T H+ EVIDNA DE + G+ + I V++ Sbjct: 2 SQYQESSIRVLKGLEPVKQRPGMY---TRTDCPLHIIQEVIDNAADEALGGFGSRITVTI 58 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVG 158 +G ++V D GRGIP+ HP+ +E++ T LHAGGKF+ Y SGGLHGVG Sbjct: 59 HTDGSVSVQDEGRGIPIGLHPE-EKVPVIELVFTRLHAGGKFNKADGGAYRFSGGLHGVG 117 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEK--KEKVRNKRGTRITFRPDPKIF 216 +SV NALS L V+ R + + FS G + PL+ + K+GT + PDP+ F Sbjct: 118 VSVTNALSTRLEVSAVRDKQVGTLVFSGGDVIEPLKVRPQTGSDPKKGTTVRVWPDPQYF 177 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + ++ +SKA L V+ +K E + + F GL+ +L+ + Sbjct: 178 DSAV-LPLNEMDRLLRSKAVLLKGVEVVLVTEK-------TGEAKRWKFDDGLRGFLKEE 229 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWC------EENPEITSYCNTILTDEGGTH 330 L +R L++ + G E A E P SY N I T GGTH Sbjct: 230 LLDRELVAPMFSGDLSVDVLRDEGFAEGEGAAWALAFVAEGTPVRESYVNLIPTSAGGTH 289 Query: 331 ESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 ESGLR A+ + IK + E+ + I ++ DD+ A +LS + +P+F GQ K +L S Sbjct: 290 ESGLREAVFQAIKAFCEMHSLMPKGIKLMPDDIFSKANFVLSAKVLDPQFQGQIKERLNS 349 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRL 449 DA R V + ++ F+ +L Q+ + K+ E I++++ R R ++V ++ + L Sbjct: 350 RDAVRLVSSLVKPAFELWLNQHVEDGKKIAELAIKQAQARSR--AAQKVEKRKSSSVAIL 407 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKL DC E+F+VEGDSAGGSAK R++ QAVLPLRGK+LN +++ Sbjct: 408 PGKLTDCESTDITLNEVFLVEGDSAGGSAKMGRDKEFQAVLPLRGKVLNAWETDKDRLFA 467 Query: 510 NQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDL 566 NQ+I D+ A+G D LRY K+ I++DADVDG+HI LLLT FY+ L Sbjct: 468 NQEIHDIAVAIGVDPHGVNDNPDLSGLRYGKICILSDADVDGSHIQVLLLTLFYKHFPAL 527 Query: 567 IEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFK 618 I ++L++ PPLFR+ QG K +Y DE + ++ K G + I+ISRFK Sbjct: 528 IRSQNLYVARPPLFRVDVPAQGKKPARKLYCLDEAELYAVQDKLGKEGVKEANIKISRFK 587 Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG-TKADERFKFIQER 677 GLGEM A QL ET ++ + R LL V + + +T ++ LMG T++ R +++++ Sbjct: 588 GLGEMNAEQLWETTLNPDTRRLLPVTL--GSMDVNETNAMMHMLMGRTESGARRTWLEDK 645 Query: 678 ASFID 682 + ++ Sbjct: 646 GNLVE 650 >gi|148926822|ref|ZP_01810501.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486] gi|145844547|gb|EDK21654.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486] Length = 769 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I DD+ + I+SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|171913703|ref|ZP_02929173.1| DNA gyrase subunit B [Verrucomicrobium spinosum DSM 4136] Length = 864 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 216/598 (36%), Positives = 326/598 (54%), Gaps = 23/598 (3%) Query: 27 GEIPDSPAFANQSASDN--YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDN 84 + ++P N +DN Y A I LEGLE VR RPGMYIG DE+ LHH EV+DN Sbjct: 2 SDDNNTPETFNTGIADNQAYGAEQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDN 61 Query: 85 AMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD 144 ++DE +AG+ I V++ +G +V D+GRGIPVE HPKF T+E++LT LHAGGKF Sbjct: 62 SIDEHLAGFCKTITVTIHSDGSCSVEDDGRGIPVEIHPKF-GVPTVELVLTNLHAGGKFG 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK-- 202 Y+ SGGLHGVG VNALS+ V R + FSRG PL + + Sbjct: 121 QGAYKYSGGLHGVGAKCVNALSEWFKAEVYRGGKAHAISFSRGKTTEPLTVVGDLEDPTR 180 Query: 203 RGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEE 262 GT+ITF PD +IF F L+ + A+L+ V ++ +E Sbjct: 181 TGTKITFFPDAEIFTATTEFRFELLVNRLRELAFLNPGVIIVLKDER-----PEPIREET 235 Query: 263 FYFPGGLKTYLQTKLENRSLISSEIFTGKTEK-----KGTHRGTVEWAIAWCEEN-PEIT 316 F++ G+ ++ +N+ L+ + + ++ V+ + + + ++ Sbjct: 236 FFYKFGVVEFVVQLGDNKVLVHDKPVVLRGQRFIEVEDKQDICFVDCVLQYNDSYSEQML 295 Query: 317 SYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFI 374 + N+I +GGTH SG R A+TR I ++A+ + + +D V ILSV + Sbjct: 296 CFANSIPNPDGGTHLSGFRSAMTRAINQFAKANKMVKESDPPITGEDCREGMVCILSVKL 355 Query: 375 REPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRK 434 P F QTK KLV+ + + V + + + +L +NP A ++++ ++ + R RK Sbjct: 356 PNPRFNSQTKGKLVNGEVEGAVSSVVYEGMQQFLDENPGVAKRIIDKILTAARAREAARK 415 Query: 435 QREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE RK+ + LPGKLADC++ +ELFIVEGDSAGGSAK R+R QA+LPLRG Sbjct: 416 ARETVRKSVMTGGGLPGKLADCTERDPAKSELFIVEGDSAGGSAKVGRDRRVQAILPLRG 475 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRS-----QYREEDLRYEKVIIMTDADVDGA 549 K++NV A +K N++I ++ A+G +R E RY K+IIMTDADVDG+ Sbjct: 476 KLINVEKARLDKALQNREIQAMITAIGTGIGDGADEGSFRLEKARYHKIIIMTDADVDGS 535 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 HI +LLLTFF ++M +L+ + ++++ PPL+ + + + Y D+ IL + Sbjct: 536 HIRTLLLTFFCRQMPELVRRGYIYIAQPPLYLVKRRKREEYVQDDGELNHILIDLGAE 593 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ILE G+ +EI RFKGLGEM A +L T M+ R LLRV +N++ + Sbjct: 780 ILEGVMNIGRRGLEIRRFKGLGEMNAKELYTTTMEQKTRKLLRVRLNEENE--IEADRIF 837 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+E A + ++ Sbjct: 838 TILMGDIVEPRKIFIEENALNVRNLD 863 >gi|319404951|emb|CBI78553.1| DNA gyrase subunit B [Bartonella sp. AR 15-3] Length = 809 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 226/565 (40%), Positives = 335/565 (59%), Gaps = 16/565 (2%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGYA L+ V+L Sbjct: 12 DYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATLVNVTL 71 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 +G +V DNGRGIP + HP S E+I+T LHAGGKFD ++Y++SGGLHGVG+SV Sbjct: 72 HADGSCSVHDNGRGIPTDIHP-TEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS L + + R I F+ G+ S L+ ++ GT ITF P + F Sbjct: 131 VNALSVWLRLRIKRDGKIHEMSFTHGVADSALKIIGNCDSESGTEITFLPSSETFT-MVE 189 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L + + A+L+ + + + + ++ GGL +++ +++ Sbjct: 190 FNFETLERRLRELAFLNSGIHILLTDQRRADVQSVE-----LHYEGGLIEFVKYIDQSKK 244 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 + EK G +V+ A+ W + ++ + N I +GGTH +G R ALTR Sbjct: 245 ALIDNPIYITNEKDG---MSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALTR 301 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I YAE + K +S+ DD ILSV + +P+F+ QTK KLVS + + VEN Sbjct: 302 QINGYAESSGIAKKEKVSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVEN 361 Query: 399 ALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCS 457 + + +L ++P EA L+ + V + R+ + RK A+ LPGKLADC Sbjct: 362 LVNEGLSAWLEEHPNEAKILISKVVEAAAVREAARKARELTRRKGALDITSLPGKLADCQ 421 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A +++ +++ I L+ Sbjct: 422 ERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTLI 481 Query: 518 QALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALG + +RY K+IIMTDADVDGAHI +LLLTFF+++M +LIE+ +L++ Sbjct: 482 TALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQ 541 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++++G S Y +E ++ L Sbjct: 542 PPLYKVSRGKFSQYIKNEAAFEEFL 566 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 13/121 (10%) Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +LIE ++ PPL ++ ++ +LE K+GK + + R+KGLGEM Sbjct: 701 NLIE---VYSF-PPLLHRKDKSERIFG-----PIGLLESIFKNGKKGLTLQRYKGLGEMN 751 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 A QL ET +D + RTLL+V+IN D ++LMG + + R FIQ+ A + ++ Sbjct: 752 ADQLWETTLDPDARTLLQVKINDAT----DADSLFSRLMGDEVEPRRSFIQDNALSVANL 807 Query: 685 G 685 Sbjct: 808 D 808 >gi|205355744|ref|ZP_03222514.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421] gi|205346521|gb|EDZ33154.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421] Length = 769 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 250/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVVGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I DD+ + I+SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|217968468|ref|YP_002353702.1| DNA gyrase subunit B [Thauera sp. MZ1T] gi|217505795|gb|ACK52806.1| DNA gyrase, B subunit [Thauera sp. MZ1T] Length = 833 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 233/609 (38%), Positives = 346/609 (56%), Gaps = 36/609 (5%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85 P A+ A ++YD +SI+ LEGLE VR RPGMYIG T D LHH+ EV+DN+ Sbjct: 1 MSEPQDQPTASAKAHEDYDETSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNS 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGK 142 +DE +AG+ + I +++ + ++V DNGRGIPV P +S EI++ LHAGGK Sbjct: 61 IDEALAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGK 120 Query: 143 FDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------L 190 F+ ++Y++SGGLHGVG+S VNALS ++VTVAR +F RG P + Sbjct: 121 FNQNSYKVSGGLHGVGVSCVNALSKWMNVTVARDGKRHLLEFERGKPQNRVIEVVDGVEV 180 Query: 191 SPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKE 250 SP + RGT++ + D +IFG + L K + ++L+ VK + Sbjct: 181 SPARVIGETTK-RGTKVHYLADEEIFGTI-EYHYDILAKRLRELSFLNNGVKIRLIDQR- 237 Query: 251 IAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEW 304 ++E+F F GG+K +++ ++++ +F + VE Sbjct: 238 ------TGKEEDFAFAGGVKGFVEYINRAKTVLHPNVFYATGTTRIPTGHGHDAELAVEV 291 Query: 305 AIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDD 361 A+ W + ++ Y N I +GGTH +GLR A+TR I KY E + K + I DD Sbjct: 292 AMQWNDSYQEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDD 351 Query: 362 LMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW 421 + +LSV + +P+FA QTK KLVS +A+ VE + +L++NPI+A + Sbjct: 352 MREGLACVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVASKLGDFLLENPIDAKTICNK 411 Query: 422 VIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQ 480 ++E + R RK RE+ R+ + + LPGKLADC + EL++VEGDSAGGSAKQ Sbjct: 412 IVEAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQ 471 Query: 481 ARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVI 539 R+R QA+LPL+GKILNV A +K+ +Q+I L+ ALG + Y+ E LRY ++I Sbjct: 472 GRDRKFQAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRII 531 Query: 540 IMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQK 599 +MTDADVDGAHI +LLLTFFY++M +L+E+ H+++ PPL++I G +Y D+ Sbjct: 532 LMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKSEMYIKDDSELSN 591 Query: 600 ILEEFKKHG 608 L G Sbjct: 592 HLLRLALDG 600 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K ++ + I R+KGLGEM QL ET MD R LL Sbjct: 736 IRRGEKRQ---TVSRFADAIKWMLADVERGITKQRYKGLGEMNPEQLWETTMDPAVRRLL 792 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV+I+ + + LMG + R FI+ A + ++ Sbjct: 793 RVQIDDAI----AADEIFTTLMGDNVEPRRAFIEGNALYAQNID 832 >gi|241762428|ref|ZP_04760506.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753854|ref|YP_003226747.1| DNA gyrase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373022|gb|EER62680.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553217|gb|ACV76163.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 812 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A D+YDA SI++L GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AGY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149 +L+++++ +G ++V DNGRGIP HP+ S E+I+T LHAGGKFDN+ Y+ Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALSD L +TV R +F G+ + PL+ +KRGTR+ F Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F F+ +L + A+L+ V+ + + EK ++ GG+ Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328 +++ ++ + E ++ +EW ++ ++ + N I +GG Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH + R ALTR + YA+ + K + + DD+ I+SV + +P+F+ QTK K Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445 LVS + ++ +E+ + D +L +NP A +++ +I+ + R ++ RE+ R+ + Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC + +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN + + Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++++ L+QALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY+ M + Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +IE HL++ PPLF++ + VY DE L Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ E G + ISR+KGLGEM QL ET +D R++L+VE+ + + Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADEI 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + R FIQ+ A + ++ Sbjct: 785 FSRLMGDVVEPRRDFIQQNALSVANLD 811 >gi|121608631|ref|YP_996438.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2] gi|121553271|gb|ABM57420.1| DNA topoisomerase IV subunit B [Verminephrobacter eiseniae EF01-2] Length = 661 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 246/675 (36%), Positives = 352/675 (52%), Gaps = 42/675 (6%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIA 91 S + S Y SIR+L+GLEPVR RPGMY T H+ EV+DNA DE +A Sbjct: 2 SAKPSRLPTSGVYSEGSIRVLKGLEPVRQRPGMY---TRTDNPLHITQEVLDNAADEALA 58 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STY 148 GY I+V+L +G ++V D+GRGIP HP+ +E++ T LHAGGKFD Y Sbjct: 59 GYGKKIKVTLHIDGSVSVEDDGRGIPFGMHPE-EKAPVIELVFTRLHAGGKFDKGQGGAY 117 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTR 206 SGGLHGVG+SV NAL+ L T R+ + FS G + PL + +R GT Sbjct: 118 SFSGGLHGVGVSVTNALTTRLEATSHREGQLARLVFSGGAVIEPLRTRPLASGERRQGTT 177 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + PD + F L ++ +SKA L + +K + + + Sbjct: 178 VRLWPDAQYFES-CALPMGPLCQLLRSKAVLMPGLCVSLLNEKTRD-------TQTWQYQ 229 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPE-ITSYCN 320 GGL+ YL L +I +F G G+H E W +A+ E+ P SY N Sbjct: 230 GGLRDYLAQNLSADPVI--PLFEGAAFADGSHESFAEGEGAAWCLAFTEDGPPIRESYVN 287 Query: 321 TILTDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEF 379 I T GGTHESGLR L +K + E + + + ++ +D+ A +LS + +P+F Sbjct: 288 LIPTSAGGTHESGLRDGLFNAVKSFIELHSLLPKGVKLLPEDMFARASYVLSAKVLDPQF 347 Query: 380 AGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN 439 GQ K +L S DA R V +R + +L Q+ KL E I+ ++ R + ++ E Sbjct: 348 QGQIKERLNSRDAVRLVSGFVRPALELWLNQHVEYGKKLAELAIKAAQTRQKAGQKVEKR 407 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 + + + L PGKL DC E+F+VEGDSAGGSAK R++ +QA+LPLRGK+LN Sbjct: 408 KGSGVAVL--PGKLTDCESRDTAHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNT 465 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLL 556 +++ N +I D+ A+G D LRY KV I++DADVDGAHI LLL Sbjct: 466 WEVERDRLFANNEIHDISVAIGVDPHGPDDRPDLTGLRYGKVCILSDADVDGAHIQVLLL 525 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG-- 608 T F++ LI H+++ PPLFR+ +G K +YA D IL++ K G Sbjct: 526 TLFFRHFPQLIATGHIYVARPPLFRVDVPARGKKPAAKMYALDAGELAAILDKCAKEGLA 585 Query: 609 KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KA 667 + K +ISRFKGLGEM A QL ET ++ + R LL V++ T+ I KLMG +A Sbjct: 586 REKCQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQL--GALDFSATEGLITKLMGKGEA 643 Query: 668 DERFKFIQERASFID 682 R + ++ ++ Sbjct: 644 AARRELMELHGDAVE 658 >gi|150398412|ref|YP_001328879.1| DNA gyrase subunit B [Sinorhizobium medicae WSM419] gi|150029927|gb|ABR62044.1| DNA gyrase, B subunit [Sinorhizobium medicae WSM419] Length = 811 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 237/574 (41%), Positives = 344/574 (59%), Gaps = 16/574 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG Sbjct: 5 SETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 64 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 +A+L+ V+L+ +G +TV DNGRGIP + H + S E+I+T LHAGGKFD ++Y++SG Sbjct: 65 HADLVTVTLNPDGSVTVTDNGRGIPTDIHRE-EGVSAAEVIMTQLHAGGKFDQNSYKVSG 123 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPD 212 GLHGVG+SVVNALS L + + R I F+ G+ PL+ + GT +TF P Sbjct: 124 GLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTFTPS 183 Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272 + F + F+ ARL + A+L+ V+ + + + EE + GGL+ + Sbjct: 184 EQTFSNI-EFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRR-----EELMYDGGLEAF 237 Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHE 331 + + + + + + EK G TVE A+ W + + + N I +GGTH Sbjct: 238 VAYLDRAKKPLVQKPVSIRGEKDGI---TVEVAMWWNDSYHENMLCFTNNIPQRDGGTHM 294 Query: 332 SGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G R ALTR I YA+ + K +S+ DD +LSV + +P+F+ QTK KLVS Sbjct: 295 AGFRAALTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVS 354 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLR 448 + + VE+ + + +L ++P +A L+ V+E + R RK RE RK A+ Sbjct: 355 SEVRPVVESLVNEALGVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISS 414 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKLADCS+ +ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV A +K+ Sbjct: 415 LPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKML 474 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 ++Q+I L+ ALG + LRY K+IIMTDADVDGAHI +LLLTFF+++M LI Sbjct: 475 SSQEIGTLITALGTSIGPDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLI 534 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 E+ HL++ PPL+++ +G Y DE+ + L Sbjct: 535 ERGHLYIAQPPLYKVARGKSVQYLKDEKALEDYL 568 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%) Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET 631 ++ PP+ R GT+ + + +L+ G+ + + R+KGLGEM A QL ET Sbjct: 707 VYGA-PPMLRRRDGTQEISG-----PRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWET 760 Query: 632 AMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +D N R+LL+V++N D ++LMG + + R FIQE A + ++ Sbjct: 761 TLDPNVRSLLQVKVNDAT----DADGLFSRLMGDEVEPRRDFIQENALSVANLD 810 >gi|58038495|ref|YP_190459.1| DNA gyrase subunit B [Gluconobacter oxydans 621H] gi|58000909|gb|AAW59803.1| DNA gyrase subunit B [Gluconobacter oxydans 621H] Length = 814 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 222/584 (38%), Positives = 337/584 (57%), Gaps = 17/584 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + ++Y ASSI +L+GL+ VR RPGMYIG TD+ LHH+ E+IDNA Sbjct: 1 MSETQNQPEIPGADGEDYGASSISVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEIIDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE AG+A ++L+G+G ++V D+GRGIP + HP+ S E++LT LHAGGKF+ Sbjct: 61 VDEAQAGHATYCILTLNGDGSVSVRDDGRGIPTDLHPE-EGISAAEVVLTKLHAGGKFNQ 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG +VVNALS+ + V + R +F G L RGT Sbjct: 120 NSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGLEHKIRFQHGERDEALHVIGPSSEDRGT 179 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +TF+P + F FD + L + + A+L+ + ++ + P++ F++ Sbjct: 180 LVTFKPSKQTFTKV-DFDISILERRVRELAFLNSGMLIILRDER-----HAEPKELRFHY 233 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL + + +++ I + TG+ VE+A+ W + + + N I Sbjct: 234 DGGLSAFAEWLDSSKTSIVTPPITGEI-DNPESGIRVEFALTWNDSYHETMLCFTNNIPQ 292 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 +GGTH +G R ALTR + KYAE + A S+ +D+ +LSV + +P+F+ QTK Sbjct: 293 RDGGTHLAGFRQALTRVVGKYAEGVAKREAGSLTGEDMREGMTAVLSVKVPDPKFSSQTK 352 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443 KLVS + Q V A D H+ +P EA ++ +I+ + R R+ RE+ R+ Sbjct: 353 DKLVSSEVQPVVHAAASDAISHWFETHPKEAKAIVAKIIDAASAREAARRARELTRRKGV 412 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + A E+FIVEGDSAGG+AKQ R+R QA+LPLRGKILNV A Sbjct: 413 LDVSSLPGKLADCQERDASKAEIFIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVERAR 472 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLT 557 +++ + +I L+ ALG ++ LRY K++IMTDADVDG+HI +LLLT Sbjct: 473 FDRMLGSAEIGTLITALGTGIGRGEVDQGGFSAEKLRYHKIVIMTDADVDGSHIRTLLLT 532 Query: 558 FFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 FF+++M +LIEQ +L++ PPL+R +G + Y D+ ++ L Sbjct: 533 FFFRQMPELIEQGYLYIAQPPLYRAKRGQEERYLKDDAALEQYL 576 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++E G+ + I+RFKGLGEM QL T +D + RTLL+V + ++D Sbjct: 731 AVMERILLQGRRGLTINRFKGLGEMNDEQLWHTTLDPSTRTLLQVRVGD----VEDAGQV 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FI A + ++ Sbjct: 787 FSTLMGDVVEPRRDFIVGNALKVANLD 813 >gi|17548157|ref|NP_521559.1| DNA gyrase subunit B [Ralstonia solanacearum GMI1000] gi|17430464|emb|CAD16937.1| probable dna gyrase (subunit b) protein [Ralstonia solanacearum GMI1000] Length = 842 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 227/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 + + S +Y A+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 6 KPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 65 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ I V++ + ++V+DNGRGIP P +S EI++T LHAGGKFD ++Y Sbjct: 66 GHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY 125 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP---------------- 192 ++SGGLHGVG+S VN LS L +TV R + +F+RGIP + Sbjct: 126 KVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGKTVEVS 185 Query: 193 LEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIA 252 + +KRGT + F D +IF + + L K + ++L+ V + + Sbjct: 186 PLRVSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR--- 241 Query: 253 EKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-E 311 ++E+F F GG+K +++ +N++++ +F EK G VE ++ W + Sbjct: 242 ----TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWNDGF 294 Query: 312 NPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 N ++ + N I +GGTH +GLR A+TR I KY + K + DD+ + Sbjct: 295 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCV 354 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV + EP+F+ QTK KLVS + + VE + +L++ P +A + ++E + R Sbjct: 355 LSVKVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAR 414 Query: 430 LRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA Sbjct: 415 EAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQA 474 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVD 547 +LPL+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTDADVD Sbjct: 475 ILPLKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVD 534 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 G+HI +LLLTFFY++M ++IE+ H+++ PPL++I G + Y D+ L Sbjct: 535 GSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 588 Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + + I R+KGLGEM SQL ET MD +R LL+V+I + Sbjct: 756 DFHAAITWLLGEAERGISRQRYKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAI----AA 811 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 812 DQIFTTLMGDDVEPRRNFIESNALVARNID 841 >gi|118594216|ref|ZP_01551563.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181] gi|118439994|gb|EAV46621.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181] Length = 803 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 230/565 (40%), Positives = 337/565 (59%), Gaps = 18/565 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +Y+A SI+IL+GL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ N I+V + Sbjct: 11 DYNADSIKILKGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDESLAGHCNDIKVII 70 Query: 102 DGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + +TV DNGRGIP + +S EI++T LHAGGKFD ++Y++SGGLHGVG+S Sbjct: 71 HADNSITVTDNGRGIPTDIKEDDEFKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVS 130 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALSD L + V R + +F RG ++PL+ +K GT +TF P + F + Sbjct: 131 VVNALSDWLRLRVYRAGKVHEVEFKRGERVAPLKAVGDT-DKTGTEVTFLPSTETFNNV- 188 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + ++L+ VK + + E F F GG+K ++Q ++ Sbjct: 189 DFHFELLCKRIRELSFLNNGVKIELIDHRS-------GKSENFEFSGGIKGFVQYMNRSK 241 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALT 339 +++ F EK+G +++ ++ W + E + N I +GGTH +GLR A+T Sbjct: 242 NVLHQTPFHAFAEKEGI---SIDVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRAAMT 298 Query: 340 RGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 R I Y E + K + DD+ +LSV + EP+F+ QTK KLVS + Q V+ Sbjct: 299 RTINTYIESNELAKKAKVDTGGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQ 358 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLADC 456 + + YL+++P +A + +++ + R RK RK A+ L LPGKLADC Sbjct: 359 DLVGKKLTDYLLEHPKDAKIICNKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLADC 418 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + E+++VEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +KI ++Q+I L Sbjct: 419 QEKDPAQCEVYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVMKARLDKILSSQEITTL 478 Query: 517 VQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 + ALG + LRY ++IIMTDADVDGAHI +LLLTFF+++M L+E+ H+F+ Sbjct: 479 ITALGAGIGQDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPQLVEKGHIFIAQ 538 Query: 577 PPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ QG Y DE+ + L Sbjct: 539 PPLYKVKQGKDERYLKDEQELDQYL 563 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 16/122 (13%) Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEM 623 +LI+ + IT+G KS + + L K + I R+KGLGEM Sbjct: 697 KNLIDDGAV---------ITRGEKSKPVVN---FTQALAWLIDEAKNTLNIQRYKGLGEM 744 Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 SQL ET MD RTLL+V I + + + +LMG + + R +FI+E A ++ Sbjct: 745 NPSQLWETTMDPEVRTLLQVTIED----FTELEATFERLMGDQVEPRRQFIEENALGANN 800 Query: 684 VG 685 + Sbjct: 801 LD 802 >gi|167582968|ref|ZP_02375842.1| DNA gyrase subunit B [Burkholderia thailandensis TXDOH] Length = 822 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 235/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L +TV R +F RGI +SP++ Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGDTE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F D IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADQTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + +S++ IF EK G VE A+ W + + + Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 733 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821 >gi|161723181|ref|YP_443735.2| DNA gyrase subunit B [Burkholderia thailandensis E264] gi|167620901|ref|ZP_02389532.1| DNA gyrase subunit B [Burkholderia thailandensis Bt4] Length = 822 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 235/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L +TV R +F RGI +SP++ Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGDTE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F D IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADSTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + +S++ IF EK G VE A+ W + + + Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 733 NVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 789 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 790 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 821 >gi|56552479|ref|YP_163318.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4] gi|56544053|gb|AAV90207.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 812 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 223/576 (38%), Positives = 340/576 (59%), Gaps = 20/576 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 A D+YDA SI++L GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AGY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST----YE 149 +L+++++ +G ++V DNGRGIP HP+ S E+I+T LHAGGKFDN+ Y+ Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPE-EGVSAAEVIMTQLHAGGKFDNNANSNAYK 119 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITF 209 +SGGLHGVG+SVVNALSD L +TV R +F G+ + PL+ +KRGTR+ F Sbjct: 120 VSGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRF 178 Query: 210 RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGL 269 P + F F+ +L + A+L+ V+ + + EK ++ GG+ Sbjct: 179 HPSAETFK-ITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVE-----LFYEGGI 232 Query: 270 KTYLQTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGG 328 +++ ++ + E ++ +EW ++ ++ + N I +GG Sbjct: 233 AAFVKWLDRAKTALIPEPVAIHGDRDDVMIDVALEWNDSY---YEQVLCFTNNIPQRDGG 289 Query: 329 THESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTK 386 TH + R ALTR + YA+ + K + + DD+ I+SV + +P+F+ QTK K Sbjct: 290 THLAAFRAALTRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDK 349 Query: 387 LVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IR 445 LVS + ++ +E+ + D +L +NP A +++ +I+ + R ++ RE+ R+ + Sbjct: 350 LVSSEVRQPLESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMD 409 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 LPGKLADC + +E+FIVEGDSAGGSAKQ RNR NQA+LPL+GKILN + + Sbjct: 410 IASLPGKLADCQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLD 469 Query: 506 KIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 ++ +++++ L+QALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY+ M + Sbjct: 470 RMLSSKEVGTLIQALGTGIRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPE 529 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +IE HL++ PPLF++ + VY DE L Sbjct: 530 IIENGHLYIAQPPLFKVAKNRSEVYLKDEAALDNYL 565 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ E G + ISR+KGLGEM QL ET +D R++L+VE+ + + Sbjct: 729 QLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVEQ----ADVADEI 784 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + R FIQ+ A + ++ Sbjct: 785 FSRLMGDVVEPRRDFIQQNALSVANLD 811 >gi|326561746|gb|EGE12081.1| DNA gyrase subunit B [Moraxella catarrhalis 7169] Length = 819 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|158954862|gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma eriocheiris] gi|158954868|gb|ABW84391.1| DNA topoisomerase IV subunit B [Spiroplasma sp. SHRIMP] Length = 568 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 222/585 (37%), Positives = 316/585 (54%), Gaps = 26/585 (4%) Query: 60 MRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIG TD + LHHL E++DN++DE +AG+A+ I + + N +TV DNGRG+P+ Sbjct: 1 KRPGMYIGSTDIRGLHHLVWEIVDNSIDEALAGFASEINIIIHKNNGITVKDNGRGVPIG 60 Query: 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTI 179 H KST E+I + LHAGGKF Y+ SGGLHGVG SVVNALS E VT+ R I Sbjct: 61 KH--ASGKSTPEVIFSVLHAGGKFGGDGYKTSGGLHGVGSSVVNALSSEFDVTIYRDKKI 118 Query: 180 FSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSG 239 + KF+ G L+ GT + F PDP+IF F + + + + A+L+ Sbjct: 119 SNIKFNNGGKLAQKLTTIGSTATTGTTVYFVPDPEIFKVI-DFSFSTISERIRESAFLNS 177 Query: 240 RVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR 299 +K ++ + E+ F GL+ ++ E + I+ I EK Sbjct: 178 GLKITLQDER-------TDKYVEYLFNNGLEEFITYMNEGKKPITPIITFKGIEKDIDVE 230 Query: 300 GTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISI 357 ++++ E N + S+ N + T +GG+H G R LT+ I +YA ++ ++ Sbjct: 231 IALQYST---EFNENLLSFANNVKTSDGGSHVVGFRTGLTKVINEYARKEGLLKEKDKNL 287 Query: 358 ISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEA 415 S D I+SV I E ++ GQTK KL + DA+ VEN + ++++N A Sbjct: 288 DSTDTREGLTAIISVKIPESLIQYEGQTKGKLGTSDAKTAVENIVAKQMQFWMLENKTNA 347 Query: 416 TKLLEWVIERSEERLRRRKQREVNRKTAIRKLR---LPGKLADCSQNIAHGTELFIVEGD 472 ++E + + RK RE R + L GKL ELF+VEGD Sbjct: 348 YAIIEKALLARTAKEEARKAREAARGNKRKSNSERLLTGKLTPAQNKNKKVNELFLVEGD 407 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREED 532 SAGGSAK R+R QA+L LRGK++N A + + NN++I ++ A+G + + ED Sbjct: 408 SAGGSAKSGRDRKFQAILSLRGKVINAEKAKLQDLMNNEEINLMIHAIGAGFGNNFDLED 467 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRIT--QGTKSVY 590 Y K+IIMTDAD DGAHI +LLLTFFY+ M LIE K +++ PPLF+IT + K Y Sbjct: 468 ANYGKIIIMTDADTDGAHIQTLLLTFFYRFMRPLIEDKRVYIALPPLFKITNLKTKKVSY 527 Query: 591 AHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 A DE + L+ K K E+ R+KGLGEM A QL ET MD Sbjct: 528 AWDENELKTKLKHLKD----KFELQRYKGLGEMNAEQLWETTMDP 568 >gi|167822114|ref|ZP_02453585.1| DNA gyrase subunit B [Burkholderia pseudomallei 9] gi|226193304|ref|ZP_03788914.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|225934904|gb|EEH30881.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9] Length = 822 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 234/593 (39%), Positives = 338/593 (56%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L + V R +F RGI +SP++ + Sbjct: 126 GLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGETE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + +S++ IF EK VE A+ W + + + Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIEHGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 736 DFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 791 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 792 DGIFTTLMGDEVEPRRAFIENNALRAGNID 821 >gi|300689717|ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] gi|299076777|emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] Length = 838 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 226/591 (38%), Positives = 338/591 (57%), Gaps = 36/591 (6%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 ++Y A+SI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AG+ Sbjct: 5 QKPQPENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 I V++ + ++V DNGRGIP P +S EI++T LHAGGKFD ++Y++S Sbjct: 65 TEIHVTIHTDNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 124 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195 GGLHGVG+S VN LS L +TV R + F+RGIP + + Sbjct: 125 GGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLR 184 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 +KRGT + F D +IF + + L K + ++L+ V + + Sbjct: 185 VSGTTDKRGTEVHFLADEEIFTNV-EYHYEILSKRIRELSFLNNGVHIKLTDQR------ 237 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPE 314 ++E+F F GG+K +++ +N++++ +F EK G VE ++ W + N + Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGV---GVEVSMQWNDGFNEQ 293 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY + K + DD+ +LSV Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 353 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + +L++ P +A + ++E + R Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAA 413 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA+LP Sbjct: 414 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 473 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 L+GKILNV A +K+ ++Q+++ L+ A+G + LRY ++IIMTDADVDG+H Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 I +LLLTFFY++M +IE+ H+++ PPL++I G + Y D+ L Sbjct: 534 IRTLLLTFFYRQMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYL 584 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + + I R+KGLGEM SQL ET MD +R LL+V+I + Sbjct: 752 DFHAAITWLLGEAERGISRQRYKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAI----AA 807 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 808 DQIFTTLMGDDVEPRRNFIESNALVARNID 837 >gi|326569033|gb|EGE19102.1| DNA gyrase subunit B [Moraxella catarrhalis BC1] Length = 819 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 224/581 (38%), Positives = 336/581 (57%), Gaps = 18/581 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + + Y A ++R+L GLE VR+RPGMYIG TD+ LHH+ EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+ + I + + + ++V+DNGRGIPV+ HP+ S E+I+T LHAGGKFD+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPE-EGVSAAEVIMTVLHAGGKFDD 119 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L +T+ R +Q ++ G+P +PL K E + GT Sbjct: 120 NSYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLEPST-QTGT 178 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ++ F P +IF FD L K + ++L+ V+ + ++ + F Sbjct: 179 QVRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDER-------TSTTQVFEH 231 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GGL ++ + ++ G VE A+ W + ++ + N I Sbjct: 232 KGGLSEFVSYINGGKHTLNDIFHF---TADGADGIGVEVALQWSDSYNEKVLCFTNNIPQ 288 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH SG R ALTR + Y + K + I DD I+SV + +P+F+ Q Sbjct: 289 KDGGTHLSGFRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQ 348 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS + + VE A+ + YL++NP A + +I+ + R RK RK Sbjct: 349 TKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRK 408 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 + + LPGKLADC + +ELFIVEGDSAGGSAKQ RNR QA+LPL+GKILNV Sbjct: 409 STLDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVER 468 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +K+ ++ ++ L+ ALG +Y + +RY K++IMTDADVDG+HI +LLLTFF+ Sbjct: 469 ARFDKMLSSAEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFF 528 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +LIE+ H+++ PPL+++ +G + VY D E L Sbjct: 529 RQMPELIERGHIYIAQPPLYKVKRGKQEVYLKDTEALDAYL 569 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K D + + ++ + +++ R+KGLGEM QL ET MD R +L Sbjct: 723 LRRGDKDFIIKD---FEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRRML 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVGT 686 ++ I + + LMG + + R FI+E A D + T Sbjct: 780 KITIEDAIK----ADHLFSCLMGDEVEPRRIFIEENALNAD-IDT 819 >gi|119503576|ref|ZP_01625659.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080] gi|119460638|gb|EAW41730.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080] Length = 809 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 226/579 (39%), Positives = 340/579 (58%), Gaps = 20/579 (3%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 + S NYD+ SI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ Sbjct: 4 NSTQGSGNYDSDSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHC 63 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 + I V + + ++V D+GRGIP E H S E+I+T LHAGGKFD++TY++SGGL Sbjct: 64 SKISVVIHPDESVSVGDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 121 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPK 214 HGVG+SVVNALS+ L +T+ RQ + Q + G+P++PL + GT + F+P + Sbjct: 122 HGVGVSVVNALSEHLQLTIRRQGELHEQVYKHGVPVAPLAVVGET-ESTGTSVRFKPSAE 180 Query: 215 IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ 274 F + F L K + A+L+ V + ++ E + + GGL +++ Sbjct: 181 TFTNI-EFHFDILGKRLRELAFLNSGVCIELTDERSA-------RTETYAYDGGLNAFVE 232 Query: 275 TKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESG 333 + ++ I+ E VE A+ W + I Y N I +GGTH +G Sbjct: 233 FLNKGKNTINK---VFHCETIADGDVGVEVALQWNDSFQENILCYTNNIPQRDGGTHLAG 289 Query: 334 LRVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 R ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + Sbjct: 290 FRAALTRTLNNYIEKESLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSE 349 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLP 450 + VE +L F YL++NP +A ++ +I+ + R RK RK A+ LP Sbjct: 350 VKPAVEQSLGKIFGEYLLENPQDAKLVVGKMIDAARAREAARKARDMTRRKGALDIAGLP 409 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKLADC + EL++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ + Sbjct: 410 GKLADCQERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVERARFDKMLGS 469 Query: 511 QQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 ++ ++V ALGC ++++ + LRY +IIMTDADVDG+HI +LLLTFF+++M +LI++ Sbjct: 470 AEVGNIVTALGCGIGKTEFNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMRELIDR 529 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 H+++ PPL+++T+G +S Y DE L + G Sbjct: 530 GHVYIAQPPLYKLTRGKQSQYLKDEAAFDNYLTQNALEG 568 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%) Query: 583 TQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLR 642 +G K + L + + + R+KGLGEM QL ET MD + R +L+ Sbjct: 713 KRGEKQFQT---QEFAAGLGWLLQEARKGTAVQRYKGLGEMNPGQLWETTMDPDVRRMLK 769 Query: 643 VEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 V I + LMG + R +FI+E A ++++ Sbjct: 770 VTIEDAI----LADQMFTTLMGDDVEPRREFIEENALAVENLD 808 >gi|53717712|ref|YP_106698.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243] gi|53724903|ref|YP_101864.1| DNA gyrase subunit B [Burkholderia mallei ATCC 23344] gi|67642369|ref|ZP_00441126.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4] gi|76808573|ref|YP_331715.1| DNA gyrase subunit B [Burkholderia pseudomallei 1710b] gi|121600538|ref|YP_994144.1| DNA gyrase subunit B [Burkholderia mallei SAVP1] gi|124384090|ref|YP_001028199.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10229] gi|126439588|ref|YP_001057142.1| DNA gyrase subunit B [Burkholderia pseudomallei 668] gi|126451013|ref|YP_001079586.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10247] gi|126452573|ref|YP_001064386.1| DNA gyrase subunit B [Burkholderia pseudomallei 1106a] gi|134281651|ref|ZP_01768359.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305] gi|167001182|ref|ZP_02266981.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20] gi|167717460|ref|ZP_02400696.1| DNA gyrase subunit B [Burkholderia pseudomallei DM98] gi|167736495|ref|ZP_02409269.1| DNA gyrase subunit B [Burkholderia pseudomallei 14] gi|167813573|ref|ZP_02445253.1| DNA gyrase subunit B [Burkholderia pseudomallei 91] gi|167843719|ref|ZP_02469227.1| DNA gyrase subunit B [Burkholderia pseudomallei B7210] gi|167892198|ref|ZP_02479600.1| DNA gyrase subunit B [Burkholderia pseudomallei 7894] gi|167900710|ref|ZP_02487915.1| DNA gyrase subunit B [Burkholderia pseudomallei NCTC 13177] gi|167908927|ref|ZP_02496018.1| DNA gyrase subunit B [Burkholderia pseudomallei 112] gi|167916968|ref|ZP_02504059.1| DNA gyrase subunit B [Burkholderia pseudomallei BCC215] gi|217424084|ref|ZP_03455584.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576] gi|237814478|ref|YP_002898929.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346] gi|242315971|ref|ZP_04814987.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b] gi|254174704|ref|ZP_04881365.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399] gi|254184146|ref|ZP_04890737.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655] gi|254186617|ref|ZP_04893134.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194736|ref|ZP_04901167.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13] gi|254201969|ref|ZP_04908333.1| DNA gyrase, B subunit [Burkholderia mallei FMH] gi|254207301|ref|ZP_04913652.1| DNA gyrase, B subunit [Burkholderia mallei JHU] gi|254262120|ref|ZP_04953174.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a] gi|254298588|ref|ZP_04966039.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e] gi|254359610|ref|ZP_04975881.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280] gi|52208126|emb|CAH34056.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243] gi|52428326|gb|AAU48919.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 23344] gi|76578026|gb|ABA47501.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710b] gi|121229348|gb|ABM51866.1| DNA gyrase, B subunit [Burkholderia mallei SAVP1] gi|124292110|gb|ABN01379.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10229] gi|126219081|gb|ABN82587.1| DNA gyrase, B subunit [Burkholderia pseudomallei 668] gi|126226215|gb|ABN89755.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106a] gi|126243883|gb|ABO06976.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10247] gi|134247318|gb|EBA47404.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305] gi|147747863|gb|EDK54939.1| DNA gyrase, B subunit [Burkholderia mallei FMH] gi|147752843|gb|EDK59909.1| DNA gyrase, B subunit [Burkholderia mallei JHU] gi|148028824|gb|EDK86756.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280] gi|157808695|gb|EDO85865.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e] gi|157934302|gb|EDO89972.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|160695749|gb|EDP85719.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399] gi|169651486|gb|EDS84179.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13] gi|184214678|gb|EDU11721.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655] gi|217393147|gb|EEC33169.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576] gi|237505877|gb|ACQ98195.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346] gi|238523508|gb|EEP86946.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4] gi|242139210|gb|EES25612.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b] gi|243063009|gb|EES45195.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20] gi|254220809|gb|EET10193.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a] Length = 822 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 234/593 (39%), Positives = 339/593 (57%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L + V R +F RGI +SP++ + Sbjct: 126 GLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQVIGETE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + +S++ IF EK VE A+ W + + + Sbjct: 239 --FAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQG 586 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 736 DFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 791 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 792 DGIFTTLMGDEVEPRRAFIENNALRAGNID 821 >gi|283956181|ref|ZP_06373666.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792335|gb|EFC31119.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 769 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNR-------VGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----MNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVTNGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|253997716|ref|YP_003049779.1| DNA gyrase subunit B [Methylovorus sp. SIP3-4] gi|253984395|gb|ACT49252.1| DNA gyrase, B subunit [Methylovorus sp. SIP3-4] Length = 799 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 224/568 (39%), Positives = 336/568 (59%), Gaps = 21/568 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YD+SSI+ILEGL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I+V + Sbjct: 3 DYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVII 62 Query: 102 DGNGFLTVVDNGRGIPVEN-HP--KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + ++V DNGRGIP + H K +S EI++T LHAGGKFD ++Y++SGGLHGVG Sbjct: 63 HPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG ++PL ++GT + F + FG Sbjct: 123 VSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPLAITG-TTERKGTEVHFLASIETFGL 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ VK + + E F GG++ +++ Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +++++ + F EK G T+E ++ W + + + N I +GGTH +GLR A Sbjct: 234 SKTVLHPKPFYAVGEKDG---MTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + Y E + K I DD+ +LSV + EP+F+ QTK KLVS + Q Sbjct: 291 MTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSGEVQPV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 V+ + +L++NP++A + +I+ + R RK RK A+ + LPGKLA Sbjct: 351 VQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q+I Sbjct: 411 DCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 471 TLITAMGTGIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601 + PPL+++ QG Y D++ + L Sbjct: 531 IAQPPLYKVKQGKDERYLKDQQELDQYL 558 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + + L+ + K + I R+KGLGEM QL ET MD R LL Sbjct: 702 IKRGEKSQPVSN---FKAALDWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 758 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V+I+ + + LMG + + R FI+ A ++++ Sbjct: 759 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIESNALGVNNLD 798 >gi|94496546|ref|ZP_01303122.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58] gi|94423906|gb|EAT08931.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58] Length = 835 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 222/587 (37%), Positives = 342/587 (58%), Gaps = 26/587 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 S N S ++Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE + Sbjct: 2 SEEPLNSSNKNDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146 AG+ + I ++L+ +G ++V DNGRGIP H K S E+I+T LHAGGKF D++ Sbjct: 62 AGHCDRIVITLNPDGSVSVEDNGRGIPTGIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-KRGT 205 Y++SGGLHGVG+SVVNALS+ L + + R +F+ G +PL+ K+GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLDLNIWRDGKEHYMRFAYGDATAPLKVIGDAPEGKKGT 180 Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 R+TF + F ++ +D +L + A+L+ V+ + +K Sbjct: 181 RVTFLASTEKAPGDGGTFKNQTDYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVE- 239 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317 ++ GG+ +++ N++ + + + +EW ++ + Sbjct: 240 ----LFYEGGIAAFVKYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSY---YENVLC 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N I +GGTH + R ALTR + YAE + K +S+ +D+ I+SV + Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGEDMREGLTAIVSVKLP 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +P+F+ QTK KLVS + ++ +E+ + D +L +NP +++ VI+ + R +K Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPAHGKMIVQKVIDAAAAREAAKKA 412 Query: 436 RE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE RK A+ LPGKLADC + +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G Sbjct: 413 RELTRRKGAMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A +++ +++++ L+QA+G R + E LRY K++IMTDADVDGAHI +L Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LLTFFY++M +IE HL++ PPL++ ++G VY +E ++ L Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKASRGRSEVYLKNEAALEQYL 579 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +LE G+ + I R+KGLGEM A QL ET +D + R++LRVE+ + + Sbjct: 752 DLLEAILAAGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADIADEI 807 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + R +FIQ+ A + ++ Sbjct: 808 FSQLMGDVVESRREFIQDNALNVANLD 834 >gi|118602063|ref|YP_903278.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567002|gb|ABL01807.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 802 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 235/571 (41%), Positives = 343/571 (60%), Gaps = 19/571 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 ++ S Y ASSI+IL+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SEKQSQEYQASSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNAIDEALAGFCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 I ++L + ++V DNGRGIPV+ HPK S E+I+T LHAGGKFD+++Y+ISGGLH Sbjct: 62 KINITLHEDLSISVNDNGRGIPVDIHPK-EGISAAEVIMTMLHAGGKFDDNSYKISGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS+ + +TV R I+ Q ++ G+P P++ K +K GT I F+P+ I Sbjct: 121 GVGISVVNALSEWVELTVYRNGKIYFQHYNIGVPNEPIKVIGK-SDKTGTTIHFKPNVDI 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F F L+ + ++L+ V ++ +K+ F + GG+K +++ Sbjct: 180 FS-ITEFKYDILVNRIRELSFLNLGVHI-------QVKELSTGKKDFFKYKGGIKEFVRY 231 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 + ++ I + I T ++ + A+ W + I + N I GG H +G Sbjct: 232 LNKAKNPIFNNIITINAQRDDI---EINVALQWSDSYQENIYCFTNNIPQKYGGGHLAGF 288 Query: 335 RVALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTR Y + K ISI +D I+S+ I P+F+ QTK KLVS + Sbjct: 289 RGALTRTFNNYINNSSIAKKEKISITGEDTREGLTAIISIKIPNPKFSSQTKDKLVSSEV 348 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPG 451 + VE+AL + YL++NPIEA ++ +++ S R RK RE+ RK + LPG Sbjct: 349 RAPVESALNEKLSDYLLENPIEAKIIIRKILDASHARNAARKAREIIRRKGMLNIADLPG 408 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL+DC +E+F+VEGDSAGGSAKQ R+R QA+LPL+GKILNV EKI ++ Sbjct: 409 KLSDCQTKDPTKSEIFLVEGDSAGGSAKQGRDRHTQAILPLKGKILNVEKVRFEKILSSI 468 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC + +Y LRY K++IMTDADVDGAHI +LLLTFFY+ + +LIE Sbjct: 469 EVGTLITALGCGIGKEEYDITKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENG 528 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +L++ PPL++I +G + Y D + L Sbjct: 529 YLYIAQPPLYKIKKGKQECYLKDNQELNDYL 559 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + + + + +++ K K R+KGLGEM QL ET MD +RT Sbjct: 704 YIEKKNKQVK----VDRFSHVVDFLIKDAKKGQSFQRYKGLGEMNPEQLWETTMDPEQRT 759 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 LL+V+I + + + LMG K + R FI+ A +D++ Sbjct: 760 LLKVKIEDSIV----ANEVFSTLMGDKVEPRRNFIENNALLVDNL 800 >gi|254784277|ref|YP_003071705.1| DNA gyrase subunit B [Teredinibacter turnerae T7901] gi|237686033|gb|ACR13297.1| DNA gyrase, B subunit [Teredinibacter turnerae T7901] Length = 808 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 231/571 (40%), Positives = 344/571 (60%), Gaps = 21/571 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ + Sbjct: 2 SDTEHNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSE 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I + + ++V DNGRGIP E H S E+I+T LHAGGKFD++TY++SGGLHG Sbjct: 62 ILAVIHPDESISVSDNGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS +L +T+ R ++ Q + G+P +PL + GT + F P + F Sbjct: 120 VGVSVVNALSSKLKLTIRRGGKVWEQVYKHGVPQAPLSVIGET-ELTGTEVHFWPSAETF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F L K + ++L+ V+ ++ E E + + GGLK +++ Sbjct: 179 NNI-EFHFEHLAKRLRELSFLNSGVRIRLLDERSGKE-------EVYEYEGGLKAFVEFL 230 Query: 277 LENRSLISSEIFT-GKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 +N++ I+ + + E G VE A+ W + I Y N I +GGTH +G Sbjct: 231 NQNKNPINKVMHFTAQREDDGV---GVEVALQWNDGFQENIYCYTNNIPQRDGGTHLAGF 287 Query: 335 RVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 R ALTRG+ Y E K ++ DD V I+SV + +P+F+ QTK KLVS + Sbjct: 288 RAALTRGLNSYIEREGIGKKEKVATTGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEV 347 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPG 451 + VE + F+ YL++NP EA ++ +IE ++ R RK R RK A+ LPG Sbjct: 348 KTAVEQEMGSAFNDYLLENPQEAKSVVGKMIEAAKAREAARKAREMTRRKGALDIAGLPG 407 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ Sbjct: 408 KLADCQEKDPALSELYLVEGDSAGGSAKQGRSRKTQAILPLKGKILNVEKARFDKMLSSA 467 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC ++ + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ Sbjct: 468 EVGTLITALGCGIGAQEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERG 527 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 H+F+ PPL++I++G Y D++ Q+ L Sbjct: 528 HIFIAQPPLYKISKGKHEEYLKDDDALQQFL 558 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G ++ ++ + L+ K I R+KGLGEM QL ET MD R +L Sbjct: 711 VAKGERTREVNN---FAEALDWIMNESKKGYNIQRYKGLGEMNPEQLWETTMDPETRRML 767 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V + + LMG + + R FI+ A + ++ Sbjct: 768 QVTVEDAI----AADQIFTTLMGDQVEPRRDFIETNALAVANLD 807 >gi|88860613|ref|ZP_01135250.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas tunicata D2] gi|88817208|gb|EAR27026.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas tunicata D2] Length = 805 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 220/578 (38%), Positives = 348/578 (60%), Gaps = 17/578 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 S+ YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I + Sbjct: 2 SEIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDESLAGHCDDIAI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 + +G ++V DNGRGIP H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+ Sbjct: 62 MIHTDGSVSVRDNGRGIPTSIHEE-EGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS++L +T+ R+ + Q ++RG+P +PL + + GT I F P + F D Sbjct: 121 SVVNALSEKLRLTIRREGKVHEQFYTRGVPDAPLAVIGE-SDTTGTEIRFWPSGETFTDL 179 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 + L K + ++L+ V +++ + F + GG+K +++ +N Sbjct: 180 N-YHYDILAKRLRELSFLNSGVSIRLMDERD-------ERNDHFKYEGGIKAFVEYLNKN 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + +F + ++ +VE A+ W + + + N I +GGTH +G R AL Sbjct: 232 KTPVHQSVFHFNSTRE-EDGISVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGAL 290 Query: 339 TRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR + Y + K S DD ++SV + +P+F+ QTK KLVS + + V Sbjct: 291 TRTLNNYMDKEGFNKKEKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLAD 455 E A+ + +L+++P EA ++ +++ + R R+ RK A+ LPGKLAD Sbjct: 351 EQAMTEKLTEFLLEHPTEAKIVVTKIVDAARAREAARRARDMTRRKGAMDLAGLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL+IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ Sbjct: 411 CQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 470 Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC R +Y+ E LRY +IIMTDADVDG+HI +LLLTFFY++M +++E+ ++++ Sbjct: 471 LITALGCGIGRDEYKPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKI 612 PPL+++ +G + Y D+ + L Sbjct: 531 AQPPLYKVKKGKQERYIKDDPALTEYLTTLALEDSSLY 568 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 29/159 (18%) Query: 538 VIIMTDADVDGAHIASLLLTFFYQE-----------MYDLIEQKHLFLISPPLFRITQGT 586 VI + +D HI L L F M +LIE+ ++ +G Sbjct: 664 VITIRQHGIDKDHI--LNLDFITSHDYRKIKKTGELMANLIEEG-GYI--------QRGE 712 Query: 587 KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEIN 646 K++ + LE K + I R+KGLGEM SQL ET MD + R +L+V+I Sbjct: 713 KTLEVTN---FVDALEWLITESKRGLYIQRYKGLGEMNPSQLWETTMDPSARRMLQVKIE 769 Query: 647 KDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + + R +FI+ A + ++ Sbjct: 770 DAI----AADQLFATLMGDQVEPRREFIERNALRVVNLD 804 >gi|254246825|ref|ZP_04940146.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Burkholderia cenocepacia PC184] gi|124871601|gb|EAY63317.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Burkholderia cenocepacia PC184] Length = 833 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 237/607 (39%), Positives = 345/607 (56%), Gaps = 33/607 (5%) Query: 23 LKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEV 81 ++ +I S +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV Sbjct: 2 APQNRKISMSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEV 61 Query: 82 IDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLH 138 +DN++DE +AGY N I V++ + ++V DNGRGIP + + K +S EI++T LH Sbjct: 62 LDNSIDEALAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELH 121 Query: 139 AGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP--------- 189 AGGKFD ++Y++SGGLHGVG+S VNALS L +TV R +F RG+ Sbjct: 122 AGGKFDQNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVD 181 Query: 190 ---LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWS 246 +SP+ N RGT + F DP IFG + L K + ++L+ V+ + Sbjct: 182 GVEVSPMLVTGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLT 239 Query: 247 CDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAI 306 + E F F GG+K +++ + ++ + +F EK G VE A+ Sbjct: 240 DLRSGKEDD-------FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAM 289 Query: 307 AWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLM 363 W + + + N I +GGTH +GLR A+TR I KY + K + DD+ Sbjct: 290 QWNDSYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMR 349 Query: 364 ISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVI 423 +LSV + EP+F+ QTK KLVS + + VE + + +L++ PI+A + ++ Sbjct: 350 EGLSCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIV 409 Query: 424 ERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482 E + R RK RE+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R Sbjct: 410 EAARARDAARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGR 469 Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIM 541 +R QA+LPLRGK+LNV A +K+ +++QI+ LV ALGC + + LRY ++IIM Sbjct: 470 DRKFQAILPLRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIM 529 Query: 542 TDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TDADVDGAHI +LLLTF Y++M D+IE+ ++++ PPL++I G Y D+ + Sbjct: 530 TDADVDGAHIRTLLLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHM 589 Query: 602 EEFKKHG 608 G Sbjct: 590 LRLALQG 596 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 747 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 802 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 803 DGIFTTLMGDDVEPRRAFIESNALRAGNID 832 >gi|307296994|ref|ZP_07576810.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1] gi|306877520|gb|EFN08748.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1] Length = 835 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 221/587 (37%), Positives = 344/587 (58%), Gaps = 26/587 (4%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 S N S++Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE + Sbjct: 2 SEESQNNPNSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNS 146 AG+ + I ++L+ +G ++V DNGRGIP + H K S E+I+T LHAGGKF D++ Sbjct: 62 AGHCDRILITLNPDGSVSVEDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGT 205 Y++SGGLHGVG+SVVNALS+ L + + R +F+ G ++PL+ K+GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPAGKKGT 180 Query: 206 RITFRPDPK-------IFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 ++TF P + F + FD +L + A+L+ V+ + + +K Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEVE- 239 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITS 317 ++ GG+ +++ N++ + + + +EW ++ + Sbjct: 240 ----LFYEGGIAAFVKYLDRNKTPLMPDPIAISGSRDDVTIDVALEWNDSY---YENVLC 292 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N I +GGTH + R ALTR + YA+ + K +S+ +D+ I+SV + Sbjct: 293 FTNNIPQRDGGTHLAAFRAALTRTLNNYADKSGMLKKEKVSLTGEDMREGLTAIVSVKLP 352 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 +P+F+ QTK KLVS + ++ +E+ + D +L +NP +++ VI+ + R +K Sbjct: 353 DPKFSSQTKDKLVSSEVRQPLESLMADKMAEWLEENPQHGKMIVQKVIDAAAAREAAKKA 412 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE+ R+ + LPGKLADC + +ELF+VEGDSAGGSAKQ RNR NQA+LPL+G Sbjct: 413 RELTRRKGVMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKG 472 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASL 554 KILNV A +++ +++++ L+QA+G R + E LRY K++IMTDADVDGAHI +L Sbjct: 473 KILNVERARFDRMLSSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 LLTFFY++M +IE HL++ PPL++ T+G VY +E + L Sbjct: 533 LLTFFYRQMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYL 579 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++LE G+ + I R+KGLGEM A QL ET +D + R++LRVE+ + + Sbjct: 752 ELLEAILASGRKGLAIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQ----ADVADEI 807 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQ+ A + ++ Sbjct: 808 FTRLMGDVVEPRREFIQDNALNVANLD 834 >gi|92112113|gb|ABE73747.1| DNA gyrase subunit B [Azoarcus communis] Length = 832 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 231/601 (38%), Positives = 341/601 (56%), Gaps = 36/601 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 +A + YD SSI+ LEGLE VR RPGMYIG T D LHH+ EV+DN++DE +AG+ Sbjct: 8 PVQPAAENAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGH 67 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 + I +++ + ++V DNGRGIPV P +S EI++ LHAGGKF+ ++Y++ Sbjct: 68 CDDIVITIHADNSISVADNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKV 127 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198 SGGLHGVG+S VNALS L + V R +F+RGIP SPL+ + Sbjct: 128 SGGLHGVGVSCVNALSKWLRLVVRRDGKKHFMEFNRGIPQDRVIEVVDGIETSPLKIIGE 187 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 RGT + + D +IFG + L K + ++L+ VK + Sbjct: 188 SSK-RGTEVHYLADEEIFGTV-EYHYDILAKRLRELSFLNNGVKIRLLDQR-------TG 238 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEEN 312 ++E+F F GG+K +++ ++++ +F + VE A+ W + Sbjct: 239 KEEDFAFAGGVKGFVEYINRTKTVLHPTVFYAAGTTRIPTGAGHDAELAVEVAMQWNDSY 298 Query: 313 -PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGI 369 ++ Y N I +GGTH +GLR A+TR I KY E + K + I DD+ + Sbjct: 299 AEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLACV 358 Query: 370 LSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEER 429 LSV + +P+FA QTK KLVS +A+ VE + + +L++NPI+A + ++E + R Sbjct: 359 LSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLGDFLLENPIDAKTICNKIVEAARAR 418 Query: 430 LRRRKQ-REVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 RK RK + + LPGKLADC + EL++VEGDSAGGSAKQ R+R QA Sbjct: 419 DAARKAREMTRRKGILDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQA 478 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVD 547 +LPL+GKILNV A +K+ +Q+I L+ ALG + Y+ E LRY ++I+MTDADVD Sbjct: 479 ILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVD 538 Query: 548 GAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 GAHI +LLLTFFY++M +L+E+ H+++ PPL++I G +Y D+ L + Sbjct: 539 GAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLALD 598 Query: 608 G 608 G Sbjct: 599 G 599 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + + I R+KGLGEM QL ET MD R LLRV+I+ + Sbjct: 747 FADAITWLLNEVERGITKQRYKGLGEMNPDQLWETTMDPAVRRLLRVQIDDAI----AAD 802 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + L+G + R FI+ A + ++ Sbjct: 803 EIFTTLLGDNVEPRRAFIEGNALYAQNID 831 >gi|170731359|ref|YP_001763306.1| DNA gyrase subunit B [Burkholderia cenocepacia MC0-3] gi|169814601|gb|ACA89184.1| DNA gyrase, B subunit [Burkholderia cenocepacia MC0-3] Length = 824 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + +F EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ PI+A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|134288296|ref|YP_001110459.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4] gi|134132946|gb|ABO59656.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4] Length = 654 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 249/664 (37%), Positives = 359/664 (54%), Gaps = 40/664 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YD S +LEGLEPVR PGMY T + H+ EV+DNA DE G+A+ I+V + Sbjct: 8 YDESDFDVLEGLEPVRQVPGMY---TRTENPMHIIQEVLDNAADEAQNGHASRIDVIVHR 64 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISGGLHGVGISVV 162 + +TV DNGRGIPV HP + + T LHAG KF ++Y+ SGGLHGVG++V Sbjct: 65 DNSVTVADNGRGIPVGLHP-TKQIPVVVLAYTKLHAGAKFRKGNSYQRSGGLHGVGVAVT 123 Query: 163 NALSDELHVTVARQNTIFSQKFSRGIP-LSPLEKKEKV-RNKRGTRITFRPDPKIFGDKA 220 NALS ++ V V R+ + F G +S +E GTR+ P+PK F Sbjct: 124 NALSTKVEVEVKREGKVHRVHFLDGDREISDVELVGDCGPRTTGTRVRAWPNPKYFAS-P 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 A+ ++ +SKA L V + D+ E+ + + G+ YL ++ + Sbjct: 183 QIPLAKFEELLRSKAMLMPGVTVNYRNDETGDERS-------WCYKDGIGDYLSERIADL 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVE-----WAIAWCEENPEITSYCNTILTDEGGTHESGLR 335 L+ E+FTG+ + VE WAIAW E+ SY N I T GGTHE+GLR Sbjct: 236 ELVG-EVFTGQGYVAESVGSIVEGDGAKWAIAWTIESGRGESYVNLIPTPLGGTHEAGLR 294 Query: 336 VALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 L +K Y E R I++ ++D+ A ILS + +F GQTK KL S + R Sbjct: 295 AGLFEALKAYCEHHAMLPRGITLQAEDVWSHAQFILSAAVTNTQFQGQTKDKLNSREVVR 354 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLA 454 + +RDPFDH+L+ +P A K+ E I ++ R R + + V ++ + LPGKL Sbjct: 355 LLSTVVRDPFDHWLIDHPEAAKKVAELAIRQATARAR--QGKVVEKRKSSGVATLPGKLT 412 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC ELF+VEGDSAGGSAKQARNR QA+LPLRGKILN +++ +N ++ Sbjct: 413 DCESTDITRNELFLVEGDSAGGSAKQARNREYQAILPLRGKILNTFDTARDQLFSNNEVH 472 Query: 515 DLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 D+ A+G + D LRY K+ ++TDADVDG+HI +LLLT F+ +L+E+ H Sbjct: 473 DISVAIGVDPHERGSAVDLSGLRYGKIALLTDADVDGSHIQTLLLTLFFIHFPELVERGH 532 Query: 572 LFLISPPLFRITQGTK-------SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGLGE 622 +++ PPLFRI G + +Y D+ + +L + G + ISRFKGLGE Sbjct: 533 VYIAQPPLFRIDVGAQGKGRPARKIYCLDDAERMSVLRQLADEGVRDSALSISRFKGLGE 592 Query: 623 MLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERASFI 681 M QL+ET M A+ R +L+V + D L DT + + LM +A R +++E+ Sbjct: 593 MNPEQLRETTMHADTRRMLQVGVPDDG--LADTLKAFHLLMAKGEAGSRRAWLEEKGDLA 650 Query: 682 DDVG 685 + + Sbjct: 651 E-LD 653 >gi|310817257|ref|YP_003965221.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25] gi|308755992|gb|ADO43921.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25] Length = 816 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 220/589 (37%), Positives = 329/589 (55%), Gaps = 25/589 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + +Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 SEPKPQPGDYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-----STY 148 A + V + + ++V DNGRGIPV H + S E+I+T LHAGGKF+N + Y Sbjct: 62 ATSVYVKIHADSSVSVRDNGRGIPVGIHAE-EGVSAAEVIMTQLHAGGKFNNTDESGNAY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG+SVVNALS+ L + + R + +F G + ++ +RGT + Sbjct: 121 KVSGGLHGVGVSVVNALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVR 180 Query: 209 F-----RPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 F + + L + + A+L+ V+ ++ P K E Sbjct: 181 FLAAVRVAANEGTFSNLEYSYDVLERRLRELAFLNSGVRIVLEDER-----PAQPLKTEL 235 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTI 322 Y+ GG++ +++ +++ I E E+ G VE A+ W + E + N I Sbjct: 236 YYDGGVREFVKYLDRSKTAIMPEPIFMVGERAGI---GVEVAMWWNDSYHENVLPFTNNI 292 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380 +GGTH +G R ALTR I KYA+ + K I + DD +LSV + +P+F+ Sbjct: 293 PQRDGGTHIAGFRAALTRTITKYAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFS 352 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 QTK KLVS + + VEN + + + +NP A ++ +IE ++ R RK RE Sbjct: 353 SQTKDKLVSSEVRPAVENLVGEKLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTR 412 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RK+A+ + GKL DC++ TELFIVEGDSAGGSA+ R+R QA+LPLRGKILNV Sbjct: 413 RKSALDVNFMAGKLKDCAEKDPSKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNV 472 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTF 558 A +++ ++ +I +LV ALG LRY K++IMTDADVDGAHI +LLLTF Sbjct: 473 ERARFDRMLSSAEIGNLVMALGTGIGRDEFNLAKLRYHKIVIMTDADVDGAHIRTLLLTF 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 F+++M LIE H+++ PPL+++++G VY D+ + L + Sbjct: 533 FFRQMPQLIEAGHVYIAQPPLYKVSRGKSEVYLKDQAAYDEYLIQQGAD 581 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ +++ R+KGLGEM QL ET +D + RTLL+V ++ + + D Sbjct: 733 DLLKAILSEGERGLQLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVDD----MTEADDI 788 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ A + ++ Sbjct: 789 FTKLMGDVVEPRREFIQNNALSVANLD 815 >gi|152994047|ref|YP_001338882.1| DNA gyrase subunit B [Marinomonas sp. MWYL1] gi|150834971|gb|ABR68947.1| DNA gyrase, B subunit [Marinomonas sp. MWYL1] Length = 807 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 229/623 (36%), Positives = 356/623 (57%), Gaps = 28/623 (4%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 SENKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTIT 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VLIHPDESISVSDNGRGIPVDIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+ L +T+ + ++ Q ++ G+P +PL + GT + F+P P F + Sbjct: 121 VSVVNALSEALTLTIRKNGKVYEQFYAHGVPQAPLAIVGD-SDGAGTTVHFKPSPATFSN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V ++ +++ F + GGL+++++ Sbjct: 180 IL-FVYDILAKRLRELSFLNSGVAIRLKDER-------TGKEDFFNYTGGLRSFVEHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + VE A+ W E I Y N I +GGTH +G R A Sbjct: 232 NKTPINDIFHFMCQREDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGA 291 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + + E K+ ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 292 LTRTLNTFIEKEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTA 351 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE + F +L++ P EA ++ +I+ + R R+ RK A+ LPGKLA Sbjct: 352 VEQEMTKRFSEFLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLA 411 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ + ++ Sbjct: 412 DCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASVEVG 471 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC + LRY ++IMTDADVDG+HI +LLLTFF+++M ++IE+ H+F Sbjct: 472 TLITALGCGIGRDEFNADKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIF 531 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG------KGKIEISRFKGLGEMLASQ 627 + PPLF+I +G + Y DE + L E G + I GE LA Sbjct: 532 IAQPPLFKIKRGKQEQYIKDEAALDQHLIEVALDGAHMHVNEDAPGIQ-----GEHLAKL 586 Query: 628 LKETA-MDANKRTLLRVEINKDL 649 +++ ++A+ L RV + Sbjct: 587 MRDYIHIEADVDRLARVYPKDVM 609 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + + L K + I R+KGLGEM QL ET MD + R +L Sbjct: 710 IQRGERRETVKTISDMKSWL---MKEASRGMTIQRYKGLGEMNPEQLWETTMDPDARRML 766 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I+ + LMG + + R FIQ+ A + ++ Sbjct: 767 RVTIDDAV----AADQMFTTLMGDEVEPRRNFIQDNALNVANLD 806 >gi|171056695|ref|YP_001789044.1| DNA gyrase subunit B [Leptothrix cholodnii SP-6] gi|170774140|gb|ACB32279.1| DNA gyrase, B subunit [Leptothrix cholodnii SP-6] Length = 864 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 237/639 (37%), Positives = 352/639 (55%), Gaps = 45/639 (7%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKS----GEIPDSPAFANQSASDNYDASSIRILEGLE 56 MTD +LP + GS++ + ++ P AS Y + SI+ILEGLE Sbjct: 1 MTDPK-----SLPQEPNGSADADGVTRRDLPDVEGVPVSTGAEASAAYGSDSIQILEGLE 55 Query: 57 PVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRG 115 VR RPGMYIG T D LHHL EV+DN++DE +AG+ + I V++ + ++V+DNGRG Sbjct: 56 AVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIIVTIHTDNSISVIDNGRG 115 Query: 116 IPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVT 172 IP P +S EI LT LHAGGKF+ ++Y++SGGLHGVG+S VN LS L +T Sbjct: 116 IPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSTWLRLT 175 Query: 173 VARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 V R +F +GIP +SP++ + +KRGT + F PD IF + Sbjct: 176 VRRDGRAHFMEFRQGIPQDRVLERRDGFEVSPMKVIGET-DKRGTEVHFLPDHTIFSNI- 233 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + ++L+ VK ++ E F + GG+K +++ + + Sbjct: 234 DFHYEILSKRLRELSFLNNGVKIRLVDERNNKEDN-------FAYAGGVKGFVEFVNKGK 286 Query: 281 SLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 ++ IF + +K VE A+ W E + + N I +GGTH +GLR A Sbjct: 287 KVLHGNIFHARGDKMSDNQTNVGVEVAMQWNESYNENVLCFTNNIPQRDGGTHLTGLRAA 346 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR I KY + K + I DD+ ++SV + EP+F+ QTK KLVS + + Sbjct: 347 MTRVINKYIDDNDIAKKAKVEITGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAP 406 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLA 454 VE+ + +L++NP +A + +++ + R RK RE+ R+ + + LPGKLA Sbjct: 407 VEDIVSRLLTDWLLENPTDAKTICSKIVDAARARDAARKAREMTRRKGVLDGMGLPGKLA 466 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + E+++VEGDSAGGSAKQ R+R QA+LPLRGKILNV A EK+ + +I+ Sbjct: 467 DCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIL 526 Query: 515 DLVQALGCRTR-----SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 L+ ALG + + LRY ++IIMTDADVDGAHI +LLLTFF+++M DL+E+ Sbjct: 527 TLITALGTGIGKGMGGDDFNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPDLVER 586 Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ G Y D L + G Sbjct: 587 GNIYIAQPPLYKVKHGKHEQYLKDGSELDAYLLKVAIDG 625 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + + + + + R+KGLGEM QL ET MD R LLRV+I + + Sbjct: 778 DFRVAMAWLMQQAESSVGRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----EA 833 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 834 DKVFTMLMGDEVEPRRDFIESNALRAANID 863 >gi|144898158|emb|CAM75022.1| DNA topoisomerase II [Magnetospirillum gryphiswaldense MSR-1] Length = 704 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 234/577 (40%), Positives = 340/577 (58%), Gaps = 18/577 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 + ++ Y A SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE + Sbjct: 2 TEPVNPNPTAEEYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 AGYANL+EV L+ +G TV DNGRGIP + H K S E+I+T LHAGGKFD ++Y++ Sbjct: 62 AGYANLVEVVLNADGSCTVRDNGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFDQNSYKV 120 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFR 210 SGGLHGVG+SVVNALS+ L + + R + +F G ++PL+ +K GT +TF Sbjct: 121 SGGLHGVGVSVVNALSEFLDLRIWRSGHEHTMRFHMGDAVAPLKLVGP-SDKSGTEVTFL 179 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 P IF FD A L + A+L+ V+ + E ++ GG++ Sbjct: 180 PSTTIFTKT-EFDFATLEHRLRELAFLNSGVRLWLRDQRHPEEVVTE-----LHYEGGIE 233 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 ++ +++ + + EK G TVE A+ WC+ + N I +GGT Sbjct: 234 AFVHYLDRSKTALHAPPIAVAGEKDGI---TVEVAMEWCDSYHETQLCFTNNIPQRDGGT 290 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G R ALTR I YA + K +++ DD+ +LSV + +P+F+ QTK KL Sbjct: 291 HLAGFRAALTRTINTYANESGIAKKEKVALNGDDMREGLTCVLSVKVPDPKFSSQTKDKL 350 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAI--R 445 VS + + VEN + + + ++P EA K++ V+E + R R+ RE+ R Sbjct: 351 VSSEVRPVVENVVGEKLAEWFEEHPQEARKVVTKVVEAAAAREAAREARELTRHIVACWT 410 Query: 446 KLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSE 505 PGKLADC++ +ELFIVEGDSAGGSAKQ RNR+NQA+LPL+GKILNV A + Sbjct: 411 SSPCPGKLADCTERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFD 470 Query: 506 KIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 K+ ++ +I L+ ALG + + RY K+IIMTDADVDG+HI +LLLTFF+++M Sbjct: 471 KMLSSAEIGTLIAALGTGIGREDFNADKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMP 530 Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++IE+ +L++ PPL+R +G VY DE ++ L Sbjct: 531 EIIERGYLYIAQPPLYRAKRGQSEVYLKDERAMEEYL 567 >gi|326316174|ref|YP_004233846.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373010|gb|ADX45279.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax avenae subsp. avenae ATCC 19860] Length = 660 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 238/672 (35%), Positives = 344/672 (51%), Gaps = 38/672 (5%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + + +Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG Sbjct: 2 AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAG 58 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYE 149 + I+V+L +G + + D+GRGIP HP+ +E++ T LHA K Y Sbjct: 59 HGKRIKVTLFADGSVGIEDDGRGIPFGLHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYS 117 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRI 207 SGGLHGVG+SV NAL+ L T R I F G PL + +R GT + Sbjct: 118 FSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTV 177 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 PD K F L+ + +SKA L V +K E + + + G Sbjct: 178 RVWPDGKYFES-TALPMNELVHLLRSKAVLMPGVTVSLVNEK-------TKETQTWQYKG 229 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTIL 323 GL+ YL L +I G ++ E A E P SY N I Sbjct: 230 GLRDYLGQSLSADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIP 289 Query: 324 TDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 T GGTH++GLR L + +K + E + + + ++ +D+ A +LS + +P+F GQ Sbjct: 290 TSAGGTHDAGLRDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQ 349 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 K KL S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + Sbjct: 350 VKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGKKLAELAIKAAQTRQKAGQKVEKKKGS 409 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + L PGKL DC E+F+VEGDSAGGSAK R++ QAVLPLRGK+LN Sbjct: 410 GVAVL--PGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEV 467 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFF 559 +++ N +I D+ ALG D LRY KV I++DADVDG+HI LLLT F Sbjct: 468 DRDRLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 527 Query: 560 YQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGK 611 ++ LIE H+++ PPL+R+ +G K VYA D+ + IL++ K G + K Sbjct: 528 FRHFPKLIETGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREK 587 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADER 670 +ISRFKGLGEM A QL ET ++ + R LL V++ +T+ I KLMG +A R Sbjct: 588 CQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLG--FAETEGLITKLMGKGEAAAR 645 Query: 671 FKFIQERASFID 682 + ++ ++ Sbjct: 646 RELMELHGDAVE 657 >gi|167560988|ref|ZP_02353904.1| DNA gyrase subunit B [Burkholderia oklahomensis EO147] gi|167568252|ref|ZP_02361126.1| DNA gyrase subunit B [Burkholderia oklahomensis C6786] Length = 823 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 236/593 (39%), Positives = 340/593 (57%), Gaps = 33/593 (5%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYAN 95 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY N Sbjct: 6 NSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCN 65 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 I V++ + ++V DNGRGIP + P +S EI++T LHAGGKFD ++Y++SG Sbjct: 66 DIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVR 200 GLHGVG+S VNALS L +TV R +F RGI +SP++ Sbjct: 126 GLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRAIETRDGIDVSPMQVVGDTE 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 N-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDLRSGKEDD----- 238 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + ++++ IF EK G VE A+ W + + + Sbjct: 239 --FAFVGGVKGFVEYINKTKTVLHPTIFHINGEKDGV---GVEVAMQWNDSYNENVLCFT 293 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K I DD+ +LSV + EP Sbjct: 294 NNIPQRDGGTHLTGLRAAMTRVINKYIIDNEIAKKAKIETSGDDMREGLSCVLSVKVPEP 353 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK RE Sbjct: 354 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVEAARARDAARKARE 413 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 414 MTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 473 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 474 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTFFY++M ++IE+ ++++ PPL+++ G Y D+ + G Sbjct: 534 LTFFYRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELDAHMLRLALQG 586 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 + + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 734 NVSDFKNAMKWLMTDAERNMSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI--- 790 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 791 -AADGIFTTLMGDEVEPRRAFIENNALRAGNID 822 >gi|256830858|ref|YP_003159586.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028] gi|256580034|gb|ACU91170.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028] Length = 803 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 230/569 (40%), Positives = 337/569 (59%), Gaps = 20/569 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLI 97 + Y A +I +LEGL VRMRP MYIG T+ LHHL EVIDN++DE +AGY + I Sbjct: 2 TQKTSTYTADNITVLEGLSAVRMRPAMYIGSTNTNGLHHLVYEVIDNSIDEAMAGYCDHI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V + + +++VDNGRGIPV+ HPK K LE+++T LHAGGKFDN +Y++SGGLHGV Sbjct: 62 KVVVHMDNSVSIVDNGRGIPVDMHPK-EKKPALEVVMTVLHAGGKFDNDSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ L VTV+R Q++ RG+P +PL + +K GT + FRPD IF Sbjct: 121 GVSVVNALSEYLEVTVSRGGHRHYQRYCRGVPQAPLAVIGET-DKTGTLVRFRPDEDIFE 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + AYL+ +K + +K ++ F + GG+ ++++ K Sbjct: 180 E-LDFQYDVLAKRFEELAYLNPGIKIEFFDEKSQN-------RDVFKYEGGIISFVKNKN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ + TG+ E ++++A+ + + ++ N I T EGGTH G + Sbjct: 232 QDNGIHKVVGGTGEME-----GVSIDFALQYTAGYKENVFTFANNIRTKEGGTHLQGFKT 286 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR I Y + + K + DD+ I+SV I P+F GQTKTKL + + Sbjct: 287 ALTRAINTYIQNSDVPKKLKQKVSGDDVREGLTAIISVKIPNPQFEGQTKTKLGNSEVAG 346 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKL 453 V + + + + +NP + ++E VI+ + R R+ ++ V RK A+ LPGKL Sbjct: 347 YVATMVYEALNQFFGENPKDVRLIIEKVIDAARARDAARRAKDLVRRKGALSDNALPGKL 406 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC E+FIVEGDSAGGSAKQ RN QA+LPLRGKILNV +K+ N++I Sbjct: 407 ADCQSKDPAECEVFIVEGDSAGGSAKQGRNPKFQAILPLRGKILNVEKTRFDKMLQNKEI 466 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ A+G + LRY K++IMTDADVDGAHI +L+LTFF++ +LI+Q +L Sbjct: 467 KALITAMGAGIGQDDVDLARLRYHKIVIMTDADVDGAHIRTLILTFFFRHYEELIKQGYL 526 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++ PPL+R+ +G+ Y DE+ + L Sbjct: 527 YIAQPPLYRVHKGSFERYIKDEDEMSQFL 555 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Query: 594 EEHKQK-----ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + + +L + + I + R+KGLGEM QL T MD RT L+V I+ Sbjct: 710 DVELEATGPFDLLRQVLDLAQKGINVQRYKGLGEMNPEQLWSTTMDPEARTFLQVTIDDA 769 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 + + + KLMG K + R +FI+ A + D+ Sbjct: 770 V----EADELFTKLMGDKVEPRREFIERNALLVSDLD 802 >gi|303257797|ref|ZP_07343807.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47] gi|330998784|ref|ZP_08322512.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT 11859] gi|302859400|gb|EFL82481.1| DNA topoisomerase IV, B subunit [Burkholderiales bacterium 1_1_47] gi|329576281|gb|EGG57797.1| DNA gyrase, B subunit protein [Parasutterella excrementihominis YIT 11859] Length = 659 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 247/671 (36%), Positives = 364/671 (54%), Gaps = 38/671 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + + ++Y SIRIL+GL+PV+ RPGMY T H+ EVIDNA DEV+A + Sbjct: 2 SLEQDNKVNDYSEKSIRILKGLQPVKQRPGMY---TLTDCPLHIIQEVIDNATDEVLANF 58 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEI 150 AN I ++ +G ++V DNGRGIPV HP+ +EI+ T LHAGGKFD Y Sbjct: 59 ANRIILTEHADGSISVEDNGRGIPVGIHPE-EKVPVVEIVFTRLHAGGKFDKGAGGAYSF 117 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKVRNKRGTRIT 208 SGGLHGVG+SV NALS L VTV R S F G P K + + GTR+ Sbjct: 118 SGGLHGVGVSVTNALSSRLEVTVWRDGLESSITFEDGFVTVPLNSVKTPRPKKATGTRVR 177 Query: 209 FRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGG 268 PD K F +L+++ +SKA L + + +K+ E + + + GG Sbjct: 178 CWPDGKYFDT-LTIPKNQLIRLLRSKAVLLPGCEVVYRNEKDNIE-------QVWKYEGG 229 Query: 269 LKTYLQTKLENRSLISS---EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILT 324 LK YL +L+ L+ + F G + + W + W +E E SY N I T Sbjct: 230 LKEYLTEQLDRPPLVQPFEAQGFAGADDDTFSQGEGAGWVVCWTDEGQLERESYVNLIPT 289 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQT 383 GGTHE+GLR + + ++ + E + I +I DD+ A +L+ + +P+F GQT Sbjct: 290 PLGGTHEAGLRDGVFQAMRSFMETHGLGAKGIKMIVDDVFARASFVLNAKVLDPQFQGQT 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KL+S DA + V + +R + +L + E KL E I++++ R +++ ++ Sbjct: 350 KEKLISRDALKLVSSFVRPQMEFWLNSHVEEGRKLAEMFIKQAQARQ--HSAQKIEKRKG 407 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 LPGKL DC+ ELF+VEGDSAGGSAK+ R++ QA+LPLRGK+LN Sbjct: 408 SSVAVLPGKLTDCTSGDISRNELFLVEGDSAGGSAKKGRDKEYQAILPLRGKVLNTWEVD 467 Query: 504 SEKIRNNQQIMDLVQALGCRTR---SQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + N++I D+ ++G + +LRY K+ IM DADVDG+HI LLLT FY Sbjct: 468 QNLLFGNKEIHDISVSIGVDPHKIGEKPDISNLRYGKICIMADADVDGSHIEVLLLTLFY 527 Query: 561 QEMYDLIEQKHLFLISPPLFRIT---QGTKS---VYAHDEEHKQKILEEFKKHG--KGKI 612 + L+E H+++ PPLF+++ +G K +Y +EE +K +E+ KK +I Sbjct: 528 KHFSYLMETGHIYISMPPLFKVSVPNKGKKKERRIYCLNEEELKKTVEKLKKEKFTDAQI 587 Query: 613 EISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG-TKADERF 671 ISRFKGLGEM +LKET++D R LL V++ + L T ++ LMG +AD R Sbjct: 588 VISRFKGLGEMDWEELKETSLDPETRRLLPVKVGLPGDDL--TGKAMQILMGNKEADARK 645 Query: 672 KFIQERASFID 682 ++I+ + Sbjct: 646 QWIERHGDQFE 656 >gi|225165618|ref|ZP_03727428.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] gi|224800132|gb|EEG18551.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] Length = 895 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 225/622 (36%), Positives = 340/622 (54%), Gaps = 24/622 (3%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D + P S + + D+P ANQ+ +YDAS + L+GLE VR Sbjct: 1 MSDQTDP---KNAPTSTSDASAGIIAPTALDAPFVANQAIEGDYDASKLSQLKGLEAVRK 57 Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 +PGMYIGGTDE+ALHH SEV+DN++DE +AG+ + IEV++ +G +++ DNGRGIPV+ Sbjct: 58 KPGMYIGGTDERALHHCVSEVLDNSVDEHLAGHCSRIEVNIHVDGSISIRDNGRGIPVDI 117 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 + + +E++LTTLH+GGK+ Y+ SGG HGVG VNA+S+ V V+R + Sbjct: 118 NQE-SGLPGVELVLTTLHSGGKYGQGGYKFSGGTHGVGAKCVNAVSEWFEVEVSRNGQVH 176 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 KF RG + LE K R GT ITF+PDP+IF + F AAR+ + + A+L+ Sbjct: 177 HMKFERGKTVKKLEVIGKARG-TGTYITFKPDPEIFKETTVFQAARISQRLRELAFLNSG 235 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTE-----KK 295 ++ ++ ++ P+ E +Y+ G++ ++ ++ + E Sbjct: 236 LEIVFTDER-----PATPKPETYYYKNGVEEFVTQLNTGKNALHPRPIRITREVRSQIDD 290 Query: 296 GTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NK 352 VE + + + + Y NTI +GGTH SG R ALTR I +YA+ Sbjct: 291 KPVEIHVEVVLQYNDTYNDQVLCYTNTIHNPDGGTHLSGFRSALTRAINQYAKANNLLKD 350 Query: 353 RAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNP 412 + I DD+ ++S+ +P+F QTK KL+S + + V +A + Y NP Sbjct: 351 KDPQITGDDVREGLAAVISIKHSDPKFESQTKVKLLSPEVESVVGSASYEGLMMYFETNP 410 Query: 413 IEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGD 472 ++++ + + R RK RE RK A LPGKLADCS+ E++IVEGD Sbjct: 411 PVIKRIIDKCLNAARAREAARKARETVRKGAFSGGGLPGKLADCSERDPSLCEIYIVEGD 470 Query: 473 SAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRS------ 526 SAGGSAKQ R+R QA+LPLRGK+LNV A + + N +I ++ A G Sbjct: 471 SAGGSAKQGRDRRYQAILPLRGKVLNVEKARIDHVLGNAEIRTMITAFGTGIGEGDDSVG 530 Query: 527 QYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGT 586 + RY K+IIMTDADVDG+HI +LLLTF Y++M L E ++++ PPL++I + Sbjct: 531 GFNIAKTRYHKIIIMTDADVDGSHIRTLLLTFLYRQMRGLFEAGYVYIAQPPLYKIKRKK 590 Query: 587 KSVYAHDEEHKQKILEEFKKHG 608 + Y +++ +IL E Sbjct: 591 REQYVDNDDQMNRILLELGSED 612 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 I+ + + +G+ + I R+KGLGEM QL ET MD KR LL+V + Sbjct: 812 DIVAQIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPAKRRLLKVNV----ADAAKADAL 867 Query: 659 INKLMGTKADERFKFIQERASFIDDVGT 686 LMG + R +FI++ A + + Sbjct: 868 FTLLMGDEVPPRRQFIEDNALNVQFLDA 895 >gi|238025687|ref|YP_002909918.1| DNA gyrase subunit B [Burkholderia glumae BGR1] gi|237874881|gb|ACR27214.1| DNA gyrase, B subunit [Burkholderia glumae BGR1] Length = 825 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 238/598 (39%), Positives = 341/598 (57%), Gaps = 33/598 (5%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90 + +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE + Sbjct: 2 TEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNST 147 AGY N I V++ + +++ DNGRGIP + P +S EI++T LHAGGKFD ++ Sbjct: 62 AGYCNDIHVTIHADNSISITDNGRGIPTDVKLDDKHEPKRSAAEIVMTELHAGGKFDQNS 121 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195 Y++SGGLHGVG+S VNALS L + V R +F RG+ +SP+E Sbjct: 122 YKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPMEV 181 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 + N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 182 VGETEN-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD 239 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 F F GG+K +++ + +S++ IF EK G VE A+ W + Sbjct: 240 -------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNEN 289 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY + K + DD+ +LSV Sbjct: 290 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSV 349 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R Sbjct: 350 KVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAA 409 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LP Sbjct: 410 RKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILP 469 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 LRGK+LNV A +K+ +++QI+ LV ALGC E LRY ++IIMTDADVDGAH Sbjct: 470 LRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAH 529 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 I +LLLTF Y++M D+IE+ ++++ PPLF++ G Y DE + HG Sbjct: 530 IRTLLLTFLYRQMPDMIERGYVYIAQPPLFKVKAGKDERYLKDEGELNAHMLRLALHG 587 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G +S D + ++ + + R+KGLGEM QL ET MD N R LL Sbjct: 728 IKRGERSQAVKD---FKSAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLL 784 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV+I + LMG + + R FI+ A ++ Sbjct: 785 RVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 824 >gi|48094245|gb|AAT40430.1| DNA gyrase subunit B [Campylobacter jejuni] gi|315057444|gb|ADT71773.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni S3] Length = 769 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + I+V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDMHP-TENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSKK-TGTTIEFWPDDQIFEVT-E 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 FD L K + AYL+ ++ + ++ + + E F+F GG+ ++ + + Sbjct: 180 FDYEILAKRFRELAYLNSKITINFKDNR-------VGKHESFHFEGGISQFVIDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ H++L P Sbjct: 468 TAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + ++ + + +F++ + I + Sbjct: 579 YRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVI--------KQFLETQGHNILN 630 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 594 EEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLK 653 ++ ++LE+ + + K I R+KGLGEM QL ET MD + R LL++ I + Sbjct: 681 DKDILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQ 736 Query: 654 DTQDSINKLMGTKADERFKFIQERASFIDDVG 685 D+ N MG + + R +IQ A + + Sbjct: 737 SANDTFNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|15835080|ref|NP_296839.1| DNA gyrase subunit B [Chlamydia muridarum Nigg] gi|270285247|ref|ZP_06194641.1| DNA gyrase subunit B [Chlamydia muridarum Nigg] gi|270289266|ref|ZP_06195568.1| DNA gyrase subunit B [Chlamydia muridarum Weiss] gi|301336643|ref|ZP_07224845.1| DNA gyrase subunit B [Chlamydia muridarum MopnTet14] gi|13627141|sp|Q9PKK3|GYRB_CHLMU RecName: Full=DNA gyrase subunit B gi|7190505|gb|AAF39313.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg] Length = 804 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 227/578 (39%), Positives = 330/578 (57%), Gaps = 18/578 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + YDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AG+ + Sbjct: 3 AQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVV 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDNSTYEISGG 153 V + +G ++V DNGRGIPV+ H K S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS++ V + +S +FS+G PL+ L+ +KRGT I F PDP Sbjct: 123 LHGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQVLGST-DKRGTEILFYPDP 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +F FD A L+K + A+L+ + + D++ F++ GG+++++ Sbjct: 182 TVFSTCV-FDRAILMKRLRELAFLNRGITIIFEDDRDAGFDKVT-----FFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + + K+G E A+ W E I SY N I T +GGTH Sbjct: 236 SYLNQNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR + Y + ++ + +D+ V I+SV + P+F GQTK KL + Sbjct: 296 TGFSTALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + +NP A +++ V ++ R ++ RE+ RK+A+ R Sbjct: 356 SDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC + LRY++VIIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 E +++ PPL+R+++ Y E+ L Sbjct: 536 ENGCVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLG 573 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + +++++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+RV + + Sbjct: 712 YTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 769 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 + LMG + R +FI+ A I ++ Sbjct: 770 --EADHIFTMLMGEEVPPRREFIESHALSIRMSNLD 803 >gi|307543593|ref|YP_003896072.1| DNA gyrase subunit beta [Halomonas elongata DSM 2581] gi|307215617|emb|CBV40887.1| DNA gyrase, B subunit [Halomonas elongata DSM 2581] Length = 806 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 226/575 (39%), Positives = 340/575 (59%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ + I Sbjct: 2 SEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEIG 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 V + + +TV DNGRGIP E H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 VVIHPDESITVRDNGRGIPTEIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS+EL +T+ RQ + Q + G ++PL + G+R+ FRP + F + Sbjct: 121 VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V + ++ ++E F++ GGL+ ++ Sbjct: 180 I-EFHYDILAKRLRELSFLNSGVAIRLTDER-------TGKEELFHYEGGLRAFVDHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N+++++ + G VE A+ W + I Y N I +GGTH +G R + Sbjct: 232 NKTVLNPVFHFNVEREDGV---GVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRAS 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRTLNHYIEAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE + F YLV+ P EA ++ +++ + R RK RK A+ LPGKLA Sbjct: 349 VEQEMGRQFSEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 DCQEKDPSLSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVG 468 Query: 515 DLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ ALGC R ++ + LRY +IIMTDADVDG+HI +LLLTFF+++M LIE+ H+F Sbjct: 469 TLITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMSQLIERGHVF 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL++I +G + Y DE+ L G Sbjct: 529 IAQPPLYKIKRGKQESYLKDEQALTDYLTTTALDG 563 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 17/121 (14%) Query: 565 DLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEML 624 +L+E+ ++ R + +D LE + + I R+KGLGEM Sbjct: 702 NLVEEG-AYVA-----RGERKKSVGSFYD------ALEWLMNEAQRGLSIQRYKGLGEMN 749 Query: 625 ASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684 QL ET MD N R +LRV I + N LMG + + R FI+ A + ++ Sbjct: 750 PDQLWETTMDPNTRRMLRVSIEDAV----AADMMFNTLMGDEVEPRRDFIERNAL-VANL 804 Query: 685 G 685 Sbjct: 805 D 805 >gi|294675561|ref|YP_003576176.1| DNA gyrase subunit B [Rhodobacter capsulatus SB 1003] gi|294474381|gb|ADE83769.1| DNA gyrase, B subunit [Rhodobacter capsulatus SB 1003] Length = 816 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 225/583 (38%), Positives = 337/583 (57%), Gaps = 25/583 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 Y A SI++L+GLE VR RPGMYIG TD+ LHH+ EV+DN +DE +AG+ Sbjct: 2 TETPKNKAEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-----STY 148 AN + V + + ++V DNGRGIPV+ HP+ S E+I+T LHAGGKF+N + Y Sbjct: 62 ANYVAVKIHADSSVSVRDNGRGIPVDIHPE-EGVSAAEVIMTQLHAGGKFNNTDEGGNAY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRIT 208 ++SGGLHGVG+SVVNALSD L + V R + ++ +F +G + + + + ++GT + Sbjct: 121 KVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGTEVR 180 Query: 209 FR-----PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEF 263 F DP+ + L + A+L+ V+ ++ P + E Sbjct: 181 FMASAKTTDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDER-----PAEPLRSEL 235 Query: 264 YFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTI 322 ++ GG++ +++ +++ + + E +G VE A+ W + + + N I Sbjct: 236 HYEGGVREFVKYLDRSKTAVMPDPIYMVGEVRGI---GVEVAMWWNDSYHETVLPFTNNI 292 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFA 380 +GGTH +G R ALTR I KYA+ + + DD +LSV + +P+F+ Sbjct: 293 PQRDGGTHLAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFS 352 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VN 439 QTK KLVS + + VEN + + + ++P EA ++ +IE + R RK RE Sbjct: 353 SQTKDKLVSSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARELTR 412 Query: 440 RKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNV 499 RKTA+ LPGKLADC + +E+F+VEGDSAGGSAKQ R R NQAVLPLRGKILNV Sbjct: 413 RKTAMDVASLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKILNV 472 Query: 500 ASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 A +++ ++ QI L+ ALG R ++ LRY K++IMTDADVDGAHI +LLLTF Sbjct: 473 ERARFDRMLSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTF 532 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 F+++M +LIE +L++ PPL+++ +G VY D+ + L Sbjct: 533 FFRQMPELIEHGYLYIAQPPLYKVARGKSEVYLKDQAALEDYL 575 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L + G+ + + R+KGLGEM QL ET +D RTLL+V ++ + + +D Sbjct: 733 DLLTAILQEGEKGLTLQRYKGLGEMNPEQLWETTLDPAARTLLQVRVDD----VAEAEDI 788 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +KLMG + R +FIQ+ A ++++ Sbjct: 789 FSKLMGDVVEPRREFIQQNALSVENLD 815 >gi|93009658|gb|ABE98141.1| DNA gyrase subunit B [Mesoplasma coleopterae] Length = 563 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 234/576 (40%), Positives = 332/576 (57%), Gaps = 17/576 (2%) Query: 61 RPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN 120 RPGMYIG T + LHHL E++DN++DE +AG+AN I +++ G + V DNGRGIPV Sbjct: 1 RPGMYIGSTSKAGLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVGI 60 Query: 121 HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIF 180 KS LE++ T LHAGGKFD+ +Y+ISGGLHGVG SVVNALS + V V R+ I Sbjct: 61 QA-DSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIH 119 Query: 181 SQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGR 240 Q FS G + N+ GT + F+PDP+IF + FD + + +YL+ Sbjct: 120 HQVFSGGGTQQTEIEIIGETNETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNKG 179 Query: 241 VKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRG 300 + + + I + E++FP G+ Y++ K E + I+ IF + Sbjct: 180 LVIELNDLR-------IDKHVEYHFPNGILDYVKEKNETKVKINPSIFYVDDKHDDI--- 229 Query: 301 TVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTRGIKKYAEL--TQNKRAISI 357 VE A+ + E E ++ N I T EGGTHE GLR +L R I +YAE T NK A Sbjct: 230 EVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKY 289 Query: 358 ISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATK 417 DD+ V I+S+ +P++ GQTKTKL + DA++ V+ + D F+ +L+++P +A Sbjct: 290 SWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKA 349 Query: 418 LLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGG 476 +++ + R+ ++ RE RK+A+ LPGKLADC EL++VEGDSAGG Sbjct: 350 IIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGG 409 Query: 477 SAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYE 536 SAK RNR QA+LPLRGK+LNV + N +I +V A+G + LRY Sbjct: 410 SAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYG 469 Query: 537 KVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH 596 K++IMTDADVDGAHI +LLLTFFY+ M L+ H+++ PPL++I G K YA+ + Sbjct: 470 KIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDVE 529 Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETA 632 +++ + I R+KGLGEM QL ET Sbjct: 530 LEELKA--GDFKDSRFTIQRYKGLGEMDPIQLWETT 563 >gi|158422633|ref|YP_001523925.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571] gi|158329522|dbj|BAF87007.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571] Length = 808 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 226/576 (39%), Positives = 340/576 (59%), Gaps = 17/576 (2%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 ++ + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 2 AEPMPAASPEEYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A + V+L+ +G +TV D+GRGIP H + S E+I+T LHAGGKF+ ++Y++S Sbjct: 62 GHAKEVTVTLNADGSVTVTDDGRGIPTGIHEE-EGVSAAEVIMTQLHAGGKFNQNSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG+SVVNALS L +T+ R +F G +PL+ KRGT++TF Sbjct: 121 GGLHGVGVSVVNALSTYLDLTIWRDGKEHYMRFRHGDAEAPLKVVGDAPAGKRGTKVTFL 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 P P+ F FD A L + A+L+ V + + P++EE ++ GG++ Sbjct: 181 PSPETFTKI-EFDYATLEHRLRELAFLNSGVLITLTDAR-----GPEPKREELHYEGGVE 234 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ ++ + + + E+ G TVE A++W + I + N I + GT Sbjct: 235 AFVRYLDRSKQALLQKPVVIRAERDGI---TVEAALSWNDGYHENILCFTNNIPQRDRGT 291 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G ALTR + YA+ + K + +D +LSV + +P+F+ QTK KL Sbjct: 292 HFTGFAAALTRQVIGYADRSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKL 351 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 VS + + VE+ + D + +NP E ++ V+E + R R+ R+ RK + Sbjct: 352 VSSEVRPVVESLVGDALSTWFEENPNEGKSVVGKVVEAAAAREAARRARDLTRRKNPLDV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +E+FIVEGDSAGGSAKQ R+R+ QAVLPLRGKILNV A +K Sbjct: 412 ASLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDK 471 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++ QI L+ ALG R + LRY K+IIMTDADVDG+HI +LLLTFF+++M + Sbjct: 472 MLSSDQIGTLITALGTGIGRDDFDIAKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPE 531 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++E+ H+++ PPLF++ +G Y DE+ + L Sbjct: 532 VLERGHIYIAQPPLFKVARGKSETYIKDEKALEDYL 567 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + + G+ + + R+KGLGEM QL ET +D N R+LL+V++ + D Sbjct: 726 DLFDAITDAGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVKV----KEVDAADDL 781 Query: 659 INKLMGTKADERFKFIQERA 678 N+LMG + R FIQE A Sbjct: 782 FNRLMGDVVEPRRDFIQENA 801 >gi|319943518|ref|ZP_08017800.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC 51599] gi|319743333|gb|EFV95738.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC 51599] Length = 714 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 266/726 (36%), Positives = 375/726 (51%), Gaps = 61/726 (8%) Query: 1 MTDDSI-------DLFSTLPPQSQGSSEKLKKSGEI-PDSPAFANQSASD----NYDASS 48 M DD+ D+ S + S EI D+P A +S+S +Y +S Sbjct: 1 MIDDAASAIRVFGDVTGRTVAVSATQGGTVAASPEIIGDNPRMATRSSSSKNGADYSEAS 60 Query: 49 IRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLT 108 IR+L+GLEPVR RPGMY T + H+ EVIDNA DE + GYA I+V L +G + Sbjct: 61 IRVLKGLEPVRQRPGMY---TRTENPLHIIQEVIDNAADEALGGYARHIDVRLFKDGRVE 117 Query: 109 VVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN---STYEISGGLHGVGISVVNAL 165 V D+GRGIPV HP +EI+ T LHAGGKFD Y SGGLHGVG+SV NAL Sbjct: 118 VTDDGRGIPVGLHP-DEGVPVIEIVFTRLHAGGKFDKTAGGAYSFSGGLHGVGVSVTNAL 176 Query: 166 SDELHVTVAR--------QNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTRITFRPDPKI 215 S L VTV R + F+ G L + R++ GTR+T PDPK Sbjct: 177 SRRLEVTVWRKGDKDAAGNRLAHTIAFADGELAESLVARPATRDEPSSGTRVTVTPDPKY 236 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F A L ++ +SKA L V+ + +K E ++ + GL+ YLQ Sbjct: 237 FDSAT-IPVAELERLLRSKAVLLPGVRVTLTLEK-------TGETRQWQYDEGLRGYLQE 288 Query: 276 KLENRSLISS------EIFTGKTEKKGTHRGTVEWAIAWCEENP-EITSYCNTILTDEGG 328 +L + + + G+ + W +A+ E P SY N I T GG Sbjct: 289 ELAQEPGVEPLVLFEDQQYAGRGDDSFAEGEGAHWVVAFTENGPLARESYVNLIPTPAGG 348 Query: 329 THESGLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 THESGLR L I+ + EL + + ++++D A +LS + +P+F GQTK +L Sbjct: 349 THESGLREGLFTAIRGFIELHNLQPKGVRLMAEDAFARASFVLSARVLDPQFQGQTKERL 408 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL 447 S DA R V A+R F+ +L Q+ +A KL E VI +++ R R ++V ++ Sbjct: 409 SSRDAVRLVSGAVRTQFEFWLNQHVDQARKLAELVIRQAQARQR--SAQKVEKRKGSGVA 466 Query: 448 RLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKI 507 LPGKL DC ELF+VEGDSAGGSAK R++ NQAVLPLRGK+LN +++ Sbjct: 467 VLPGKLTDCESTDTAHNELFLVEGDSAGGSAKMGRDKENQAVLPLRGKLLNTWETEPDRL 526 Query: 508 RNNQQIMDLVQALGCRTRSQYREEDL---RYEKVIIMTDADVDGAHIASLLLTFFYQEMY 564 N +I D+ A+G + DL RY K+ I++DADVDG+HI LLLT F++ Sbjct: 527 FANNEIHDIAVAIGVDPHPRGASPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFP 586 Query: 565 DLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISR 616 LI+ H+++ PPL+R+ +G + +Y D Q E+ +K G +G +SR Sbjct: 587 ALIDAGHIYVARPPLYRVDVPARGKQPLRKIYCLDARELQHTEEKLRKDGMREGSWTVSR 646 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQ 675 FKGLGEM A QL ET ++ R+L +V + DT+ LMG +A R +++ Sbjct: 647 FKGLGEMTAEQLWETTLNPATRSLSQVRY--GAVPVPDTEAQFTLLMGKGEAAGRRSWLE 704 Query: 676 ERASFI 681 E Sbjct: 705 EHGDQA 710 >gi|84501255|ref|ZP_00999460.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597] gi|84390546|gb|EAQ03034.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597] Length = 805 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 228/580 (39%), Positives = 343/580 (59%), Gaps = 16/580 (2%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 Q ++ YDA SI++L+GL+ VR RPGMYIG TD+ LHH+ E +DN +DE +AG+ Sbjct: 2 AEPQQSAPAYDADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEAVDNGIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+ ++V + + ++V DNGRGIPV H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ADFVKVKIHADNSVSVRDNGRGIPVNMHAE-EGISAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVGISVVNALSD L + + R +F + + PL+ ++GT + F Sbjct: 121 LHGVGISVVNALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSST 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F + +D A L K + A+L+ V+ ++ P + E ++ GG+K ++ Sbjct: 181 QTFSNLN-YDYATLEKRLRELAFLNSGVRIVLEDER-----PAEPLRTELFYEGGVKEFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + ++ + SE + E+ G VE A+ W + + + N I +GGTH + Sbjct: 235 KYLDRSKQAMMSEPIHVEGERDGI---GVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMA 291 Query: 333 GLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR + +YA + + +S DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRTLTRYATESGVAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VEN + + + +NP EA ++ ++E + R RK RE RKTA+ L Sbjct: 352 EVRPAVENLVGEKLAEWFEENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 GKL DCS+ TE+F+VEGDSAGGSA+ R+R QAVLPLRGKILNV A +++ + Sbjct: 412 AGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +Q+I +LV ALG R ++ LRY K++IMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SQEIGNLVMALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +L++ PPL+++++G VY D+ + L + G Sbjct: 532 GGYLYIAQPPLYKVSRGKSEVYLKDQAALEDYLIDQGTEG 571 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ +++ R+KGLGEM QL ET +D RTLL+V + + + D Sbjct: 722 DLLQAILDEGERGLQLQRYKGLGEMNPEQLWETTLDPEARTLLQVRVED----MAEADDL 777 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R +FIQ A ++++ Sbjct: 778 FTKLMGDVVEPRREFIQANALNVENLD 804 >gi|120610027|ref|YP_969705.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1] gi|120588491|gb|ABM31931.1| DNA topoisomerase IV subunit B [Acidovorax citrulli AAC00-1] Length = 660 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 236/672 (35%), Positives = 344/672 (51%), Gaps = 38/672 (5%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAG 92 A + + +Y SIR+L+GLEPV+ RPGMY T H+ EV+DNA DE +AG Sbjct: 2 AAKPSSVSPSDYSEGSIRVLKGLEPVKQRPGMY---TRTDNPLHIIQEVLDNAADEALAG 58 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHA---GGKFDNSTYE 149 + I+V+L +G + + D+GRGIP HP+ +E++ T LHA K Y Sbjct: 59 HGKRIKVTLFADGSVGIEDDGRGIPFGLHPE-EKAPVIELVFTRLHAGGKFDKGKGGAYS 117 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKR--GTRI 207 SGGLHGVG+SV NAL+ L T R I F G PL + +R GT + Sbjct: 118 FSGGLHGVGVSVTNALALRLEATTHRDGQIARLVFEGGDVTEPLTARPLAAGERRQGTTV 177 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 PD + + L+ + +SKA L V +K E + + + G Sbjct: 178 RVWPDG-RYFESTALPMGELVHLLRSKAVLMPGVTVSLVNEK-------TKETQTWQYKG 229 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAW----CEENPEITSYCNTIL 323 GL+ YL L +I G ++ E A E P SY N I Sbjct: 230 GLRDYLGQSLPADPVIPLFEGEGYADRHNESFAEGEGAAWCVGFTDEGAPVRESYVNLIP 289 Query: 324 TDEGGTHESGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 T GGTH++GLR L + +K + E + + + ++ +D+ A +LS + +P+F GQ Sbjct: 290 TSAGGTHDAGLRDGLFQAVKSFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQ 349 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 K KL S DA R V + +R + +L Q+ KL E I+ ++ R + ++ E + + Sbjct: 350 VKEKLNSRDAVRLVSSYVRPALELWLHQHVDYGRKLAELAIKAAQTRQKAGQKVEKKKGS 409 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + L PGKL DC E+F+VEGDSAGGSAK R++ QAVLPLRGK+LN Sbjct: 410 GVAVL--PGKLTDCESRDLSHNEVFLVEGDSAGGSAKMGRDKECQAVLPLRGKVLNTWEV 467 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFF 559 +++ N +I D+ ALG D LRY KV I++DADVDG+HI LLLT F Sbjct: 468 DRDRLFANTEIHDISVALGVDPHGPNDTPDLSGLRYGKVCILSDADVDGSHIQVLLLTLF 527 Query: 560 YQEMYDLIEQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGK 611 ++ LIE H+++ PPL+R+ +G K VYA D+ + IL++ K G + K Sbjct: 528 FRHFPKLIEAGHIYVARPPLYRVDVPARGKKPASKVYALDDGELEAILDKCAKDGVAREK 587 Query: 612 IEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADER 670 +ISRFKGLGEM A QL ET ++ + R LL V++ +T+ I KLMG +A R Sbjct: 588 CQISRFKGLGEMNAEQLWETTLNPDTRRLLPVQLGDLG--FAETEGLITKLMGKGEAAAR 645 Query: 671 FKFIQERASFID 682 + ++ ++ Sbjct: 646 RELMELHGDAVE 657 >gi|107024100|ref|YP_622427.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054] gi|116688027|ref|YP_833650.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424] gi|105894289|gb|ABF77454.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054] gi|116646116|gb|ABK06757.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424] Length = 824 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + +F EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ PI+A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|186474776|ref|YP_001856246.1| DNA gyrase subunit B [Burkholderia phymatum STM815] gi|184191235|gb|ACC69200.1| DNA gyrase, B subunit [Burkholderia phymatum STM815] Length = 823 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 227/594 (38%), Positives = 338/594 (56%), Gaps = 31/594 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AG+ Sbjct: 4 TNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 + I+V + + ++V DNGRGIP P +S EI++T LHAGGKFD ++Y++ Sbjct: 64 CDDIQVIIHADNSISVTDNGRGIPTGIKRDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP--LEKKEKV--------- 199 SGGLHGVG+S VNALS L +TV R +F RG+ + + + Sbjct: 124 SGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGVVQNRVIEQVDGESLSPIPVVGE 183 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 RGT + F D IFG+ + L K + ++L+ V+ + + E Sbjct: 184 TENRGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD---- 238 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + +S++ IF EK+G VE A+ W + + + Sbjct: 239 ---FAFVGGVKGFVEYINKTKSVLHPTIFHIVGEKEGV---GVEVAMQWNDSYNENVLCF 292 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 293 TNNIPQRDGGTHLTGLRAAMTRVINKYIADHEIAKKAKVETSGDDMREGLSCVLSVKVPE 352 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P +A + +++ + R RK R Sbjct: 353 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAR 412 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 413 EMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 472 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI +L Sbjct: 473 VLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 532 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M ++IE+ ++++ PPL+++ G Y D + +G Sbjct: 533 LLTFFYRQMPEMIERGYIYIAQPPLYKVKAGKDERYLKDTAELNAHMLRLALNG 586 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD N R LLRV+I + Sbjct: 737 DFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 793 DGIFTTLMGDEVEPRRAFIESNALRAGNID 822 >gi|256376406|ref|YP_003100066.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827] gi|255920709|gb|ACU36220.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM 43827] Length = 680 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 222/679 (32%), Positives = 332/679 (48%), Gaps = 49/679 (7%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 Y A + LEGLE VR RPGMYIG TD + ++HLFSEVIDN+ DE +AG+A I V+L Sbjct: 7 YGADDLTHLEGLEAVRKRPGMYIGSTDSRGVNHLFSEVIDNSTDEGVAGHATRITVTLHP 66 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G + V D+GRGIP H K S +E++LT LHAGGKF S Y+ SGGLHGVG S VN Sbjct: 67 DGSVQVDDDGRGIPTGVHAK-SGLSGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVN 125 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------------RNKRGTRITFR 210 ALS V V R+ F+ G+P K K GT + Sbjct: 126 ALSHRYDVVVRREGKTHEMSFAHGVPGVFDGPGPKAAFTRQSGLRVTGRTRKTGTSTRYW 185 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 D + F + A D + ++ A+L V + + E F++PGGL Sbjct: 186 HDSRYFENGAALDHEAVRAKLRNTAFLVPGVTYVL---RSAVDGKIAE--EVFHYPGGLA 240 Query: 271 TYLQTKLENRSLISSEIFTGKTE---------KKGTHR------GTVEWAIAWCEENPEI 315 + + + E + G R VE A+ W Sbjct: 241 DMVDFLAPSSEKAVTGTIVITGEGVYHENAADENGVMRSKVERHAEVEIALRWGTGYERT 300 Query: 316 -TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ---NKRAISIISDDLMISAVGILS 371 + NTI GGTH G A+ + +++ T+ + DD++ ++ Sbjct: 301 VECFTNTIRNVHGGTHRRGFERAVLKSVQEAIGRTRGLLKPKEDPPTLDDVLEGMTAVVH 360 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYL--VQNPIEATKLLEWVIERSEER 429 V + EP+F QTK +L + R V + + + EA +L+ V++ + R Sbjct: 361 VRVPEPQFTSQTKDELSTAGVTRVVLALVDKHVKAWTEDRRTKAEAKVVLQKVVDAARVR 420 Query: 430 LRRRKQRE-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQA 488 L +++Q++ RKTA+ +P KL DC +ELF+VEGDSA GSA+ AR QA Sbjct: 421 LTQKQQKDAARRKTALEGAAMPPKLVDCRTTGVARSELFLVEGDSALGSARMARVSEYQA 480 Query: 489 VLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDG 548 +LPLRGKILNV A N +I +VQ LG T + +RY +VI+M DADVDG Sbjct: 481 LLPLRGKILNVQKASLADTLRNAEIASIVQVLGAGTGRTFDLSTMRYGRVILMADADVDG 540 Query: 549 AHIASLLLTFFYQEMYDLIEQKHLFLISPPLFR-ITQGT--KSVYAHDEEHKQKILEEFK 605 +HI +LL+T F + M +IE L+ PPL + +T+G ++ + + ++ + + Sbjct: 541 SHIRTLLITLFAKYMRPVIEDGRLYAAMPPLHKVVTKGRNAETHFTFTQREMEQKVARLE 600 Query: 606 KHGKGKIE-ISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMG 664 + GK ++ + RFKGLGEM A +L +T M+ R++ R+ + + + MG Sbjct: 601 RAGKTVVKPVPRFKGLGEMDAEELWDTTMNPATRSVRRITLADVEAAEAALELL----MG 656 Query: 665 TKADERFKFIQERASFIDD 683 K + R ++ A+ +D Sbjct: 657 EKVEPRRAWLVASAARVDQ 675 >gi|283953662|ref|ZP_06371193.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794703|gb|EFC33441.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414] Length = 769 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 248/660 (37%), Positives = 362/660 (54%), Gaps = 50/660 (7%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +NY AS+I++L+GLE VR RPGMYIG T+ LHH+ EV+DN++DE +AG+ + ++V + Sbjct: 3 ENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTVDVEI 62 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 G V DNGRGIPV+ HP N TL ++LT LHAGGKFD TY++SGGLHGVG+SV Sbjct: 63 TTEGSCIVSDNGRGIPVDIHP-TENIPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 121 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS +L TV R I+ Q+FS G +S K + GT I F PD +IF Sbjct: 122 VNALSKKLVATVERNGKIYRQEFSEGKIISEFGVIGKSKK-TGTTIEFWPDDQIFE-MTE 179 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F+ L+K + AYL+ ++ + ++ I + E F+F GG+ ++ + + Sbjct: 180 FNYEILVKRFRELAYLNPKITINFKDNR-------IGKHESFHFEGGISQFVTDLNKKEA 232 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEIT-SYCNTILTDEGGTHESGLRVALTR 340 L + F+ E VE A+ + + E S+ N I T +GGTHE+G R+ LTR Sbjct: 233 LTKAIFFSVDEED-----VNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287 Query: 341 GIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y E ++ I +D+ + ++SV + EP+F GQTK KL S + V Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A + Y +NPIEA ++ + + R +K RE +K ++ LPGKLADC Sbjct: 348 ASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +E+++VEGDSAGGSAKQ R RS QA+LPLRGKILNV A +KI ++QI +++ Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 A GC + LRY K+IIMTDADVDG+HI +LLLTFF++ M +L+ +++L P Sbjct: 468 TAFGCGVGEDFNLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGYIYLAQP 527 Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKET------ 631 PL+ + K +Y DE+ + L E G ++G+G M LK+ Sbjct: 528 PLYLYKKAKKQIYLKDEKALSEYLIETGIEGLN------YEGIG-MND--LKDYLKIVAA 578 Query: 632 ----AMDANKR----TLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDD 683 D KR +++R I + + N + KF++ + I + Sbjct: 579 YRVILKDLEKRFNVISVIRYMIENSNLVKGNNEKLFNVI--------KKFLETQGHNILN 630 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +ILE+ + + K I R+KGLGEM QL ET MD + R LL++ I + D+ Sbjct: 686 EILEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIED----AQSANDT 741 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 N MG + + R +IQ A + + Sbjct: 742 FNLFMGDEVEPRRDYIQAHAKDVKHLD 768 >gi|171316343|ref|ZP_02905563.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5] gi|171098472|gb|EDT43274.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5] Length = 824 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 232/593 (39%), Positives = 337/593 (56%), Gaps = 31/593 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVR 200 GGLHGVG+S VNALS L +TV R +F RG+ + ++ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPMLVTGDT 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 ENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 239 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + ++ + IF EK G VE A+ W + + + Sbjct: 240 --FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCFT 294 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 295 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 354 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ P++A + ++E + R RK RE Sbjct: 355 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKARE 414 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 415 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 474 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +LL Sbjct: 475 LNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLL 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 535 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 NDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----A 792 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|254496738|ref|ZP_05109597.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella drancourtii LLAP12] gi|254354033|gb|EET12709.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella drancourtii LLAP12] Length = 805 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 226/576 (39%), Positives = 354/576 (61%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S +YD+S+I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I Sbjct: 2 SVDASYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 V++ + ++V D+GRGIPV+ H + +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 FVTIHSDESISVKDDGRGIPVDIHQE-EGRSAAEVILTILHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS+ELH+TV R I+ Q + G+P +P+ N GT+I F+P + F Sbjct: 121 GVSVVNALSEELHLTVRRHGKIYEQHYRHGVPDAPIAVTGDANN-TGTQIWFKPSAETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + +YL+ V ++ ++ F++ GG++ +++ Sbjct: 180 NI-EFHYDILAKRLRELSYLNSGVCIHLFDERSQ-------RQDTFHYEGGIQAFVEHLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRV 336 +++++I+ +F+ EK VE ++ W + E + N I +GGTH +G R Sbjct: 232 KHKTVITPVVFSMIAEKDNI---VVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRA 288 Query: 337 ALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTR + Y E K +S DD +LSV + +P+F+ QTK KLVS + + Sbjct: 289 ALTRTLNNYIEAEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE+++ + F+ +L++NP A ++ +I+ + R R+ R RK A+ LPGKL Sbjct: 349 VVESSVSEKFNDFLLENPAIAKAIVSKIIDAARAREAARRAREMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLASQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC +Y + +RY ++IIMTDADVDG+HI +LLLTFFY++ +L+E+ ++ Sbjct: 469 ATLITALGCGIGPDEYNPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYI 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y D+E L + G Sbjct: 529 YIAQPPLYKVKRGKQEQYVKDDEALFDYLTQSALDG 564 Score = 136 bits (343), Expect = 8e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 E+ ++ L K I R+KGLGEM QL ET MD R +L+V I + Sbjct: 718 ENFEQALAWLMDEAKRGQTIQRYKGLGEMNPEQLWETTMDPAARRMLQVSIEDGV----A 773 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A +++ Sbjct: 774 ADAIFTTLMGDNVEPRRDFIESNALDAENID 804 >gi|119947311|ref|YP_944991.1| DNA gyrase, B subunit [Psychromonas ingrahamii 37] gi|119865915|gb|ABM05392.1| DNA gyrase subunit B [Psychromonas ingrahamii 37] Length = 809 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 231/602 (38%), Positives = 348/602 (57%), Gaps = 35/602 (5%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 A ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 AENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDETLAGFCTDII 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 ++ +G ++V D+GRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG Sbjct: 62 TTIHTDGSVSVRDDGRGIPVDMHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS++L +TV R I+ Q + G+P +P+ + GT + F P + F D Sbjct: 121 VSVVNALSEKLRLTVKRHGHIYQQTYIHGVPEAPIAIIGDT-EQTGTELRFWPSKETFSD 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ V +E + + F++ GG++ ++ + Sbjct: 180 TL-FHYDILAKRLRELSFLNSGVSIKLFDKRE------EDKSDHFHYEGGIEAFVNYLNK 232 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I +IF T+ + VE A+ W + I + N I +GG+H +G R A Sbjct: 233 NKTPIHQKIFHFSTDHEDGTN--VEVAMQWNDGFQENIYCFTNNIPQKDGGSHLTGFRGA 290 Query: 338 LTRGIKKYAEL-----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LTR + Y E K + D ++SV + +P+F+ QTK +LVS + Sbjct: 291 LTRTLNNYMEKEMGKVKNAKNKTATEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEV 350 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPG 451 + VE A+ + +L++NP EA + +I+ + R RK RK A+ LPG Sbjct: 351 RPVVEGAMNEHLQEFLLENPAEARIITGKIIDAARAREAARKARDMTRRKGALDLAGLPG 410 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KLADC + +EL+IVEGDSAGGSAKQ R+R NQA+LPL+GKILNV A +K+ ++Q Sbjct: 411 KLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKNQAILPLKGKILNVEKARFDKMLSSQ 470 Query: 512 QIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 ++ L+ ALGC R +Y E RY +IIMTDADVDG+HI +LLLTFF+++M +LIE Sbjct: 471 EVATLITALGCGIGRDEYNPEKTRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIENG 530 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH-----------GKGKIE----IS 615 ++++ PPL++I +G + Y DE Q L G IE I Sbjct: 531 YIYIAQPPLYKIKKGKQEDYVKDEAAMQAFLTRLAMENSSLHINSDAPGISGIELESMIQ 590 Query: 616 RF 617 R+ Sbjct: 591 RY 592 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + + + + K + I R+KGLGEM QL ET MD + R +L Sbjct: 712 IKRGERRKEVKN---FIEAVNWLMHEAKRGLYIQRYKGLGEMNPGQLWETTMDPSARRML 768 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R +FI++ A +++ Sbjct: 769 QVTIQDAVG----ADQLFSTLMGDHVEPRREFIEKNALRAENLD 808 >gi|108758234|ref|YP_628545.1| DNA gyrase subunit B [Myxococcus xanthus DK 1622] gi|108462114|gb|ABF87299.1| DNA gyrase, B subunit [Myxococcus xanthus DK 1622] Length = 815 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 224/586 (38%), Positives = 331/586 (56%), Gaps = 17/586 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 E + A Y SI LEG E VR RPGMYIG T LH L EV+DNA+ Sbjct: 1 MEKTPATGSAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAV 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ IEV + +G L+V DNGRGIPV HPKFP K TLE++LT LHAG KF N Sbjct: 61 DESLAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG++ VN LS+ V V R ++ Q +++G+P +P + +KRGT Sbjct: 121 AYKVSGGLHGVGVTCVNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTH 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I F+PD + F+ L + + A+L+ + ++ E F F Sbjct: 180 IAFKPDATVMEL-VEFNFETLSQRLRELAFLNAGLHIVVRDERTNKEHD-------FKFD 231 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+ ++++ +++ + + + TE++G ++ A+ W + I ++ N I T Sbjct: 232 GGISSFVEYLNKSKQTLHDKPISFSTEREGVM---LDIAMQWNDGYDERIYTFANNINTH 288 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383 EGG+H SG + ALTR + YAE + + +D ++SV + P+F GQT Sbjct: 289 EGGSHLSGFKAALTRTLNSYAEKGSLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQT 348 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442 KTKL + + + VE + D +L + P+ A K++ + R+ + V RK Sbjct: 349 KTKLGNSEVKGLVEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKG 408 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV A Sbjct: 409 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 468 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 EK+ + +I+ L+ ALG Y E RY ++I+MTDADVDG+HI +LLLTFF++ Sbjct: 469 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFR 528 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 +M +L+++ +L++ PPL+++T+ K Y DE + L + Sbjct: 529 QMPELLQKGYLYIAQPPLYKVTRNKKDQYVKDEHALNEYLLKIASE 574 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 +++ + + +L +K + + + R+KGLGEM QL +T M+ RT Sbjct: 716 YKVRVDAGEITVFSVQE---VLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRT 772 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + + S + + LMG + R +FI+ A + ++ Sbjct: 773 LLQVRVEDAVES----DEIFSLLMGEAVEPRREFIERNALDVQNLD 814 >gi|78064661|ref|YP_367430.1| DNA gyrase subunit B [Burkholderia sp. 383] gi|77965406|gb|ABB06786.1| DNA gyrase subunit B [Burkholderia sp. 383] Length = 824 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 232/593 (39%), Positives = 336/593 (56%), Gaps = 31/593 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NPQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKK-----------EKVR 200 GGLHGVG+S VNALS L +TV R +F RG+ + + Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPMLVTGDT 185 Query: 201 NKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEK 260 RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 ENRGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD----- 239 Query: 261 EEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYC 319 F F GG+K +++ + ++ + +F EK G VE A+ W + + + Sbjct: 240 --FAFAGGVKGFVEFINKTKTNLHPTVFFATGEKDGV---GVEVAMQWNDSYNENVLCFT 294 Query: 320 NTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP 377 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + EP Sbjct: 295 NNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEP 354 Query: 378 EFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE 437 +F+ QTK KLVS + + VE + + +L++ PI+A + ++E + R RK RE Sbjct: 355 KFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKARE 414 Query: 438 VNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 + R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK+ Sbjct: 415 MTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 474 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLL 555 LNV A +K+ +++QI+ LV ALGC + + LRY ++IIMTDADVDGAHI +LL Sbjct: 475 LNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLL 534 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 535 LTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 794 DGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|187735779|ref|YP_001877891.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425831|gb|ACD05110.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835] Length = 852 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 225/590 (38%), Positives = 321/590 (54%), Gaps = 24/590 (4%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANL 96 + +A Y A+ I LEGLE VR RPGMYIG DE+ LHH EV+DN++DE +AGY + Sbjct: 14 STTAQHEYGAAQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSK 73 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I++ + +G +++VDNGRGIPV+ HPKF +E++LT LHAGGKF Y+ SGGLHG Sbjct: 74 IDIVIHVDGSISIVDNGRGIPVDIHPKF-GIPAVELVLTNLHAGGKFGQGAYKYSGGLHG 132 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKI 215 VG VNALSD V R + KF RG + PL GT ITF PD I Sbjct: 133 VGAKCVNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATI 192 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D F RL + A+L+ + ++E +E F++ G+ +++ Sbjct: 193 FTDTTEFKFDRLTTRLRELAFLNPGLVIELIDERE-----APARRETFFYKDGIVEFVRQ 247 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGT---------VEWAIAWCEENPEI-TSYCNTILTD 325 N+ +I+ + + +K V+ + + N+I Sbjct: 248 LGTNKEVINEDPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNG 307 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH SG R ALTR I YA+ ++ S+ +D+ V ++SV + P F+ QT Sbjct: 308 DGGTHLSGFRGALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQT 367 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLV+ + + V N + + Y +NP A K++E I + R RK RE RK+A Sbjct: 368 KDKLVNTEIEGVVGNVVYEEIKTYFEENPAMAKKIIEKSITAARAREAARKARETVRKSA 427 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADCS ELFIVEGDSAGGSAK R+R QA+LPLRGK+LNV A Sbjct: 428 LSIGGLPGKLADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKAR 487 Query: 504 SEKIRNNQQIMDLVQALGCRT-----RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558 +K +++I +++ A+G + ++ + +RY K+IIMTDADVDGAHI +LLLTF Sbjct: 488 LDKALGSKEIQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTF 547 Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 F + M L+ +L++ PL+RI + K Y D+ + L E + Sbjct: 548 FCRHMPQLVRAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVND 597 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 19/125 (15%) Query: 570 KHLFLISPPLFRITQGTKSVYAHDEEHKQK---------ILEEFKKHGKGKIEISRFKGL 620 + + PLF + +G E K+K ILE GK +EI+RFKGL Sbjct: 737 NMIVSMDTPLFELVEG--------EGDKEKVTPLFSVMDILESVISIGKRGVEITRFKGL 788 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680 GEM A L +T MD +R LLRV +N D + + LMG + R +I + A Sbjct: 789 GEMDAKDLFKTTMDPERRELLRVILNDD--NAVRADEMFTILMGDVVEPRKNYIVDHALN 846 Query: 681 IDDVG 685 + ++ Sbjct: 847 VRNLD 851 >gi|124265196|ref|YP_001019200.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1] gi|124257971|gb|ABM92965.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1] Length = 851 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 239/624 (38%), Positives = 341/624 (54%), Gaps = 38/624 (6%) Query: 1 MTDDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRM 60 M+D P S + AS Y SI+ILEGLE VR Sbjct: 1 MSDP------KTPQHDAQSGVTQQPVPSAEGHAISVGSDASVAYGEGSIQILEGLEAVRK 54 Query: 61 RPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 RPGMYIG T D LHHL EV+DN++DE +AG+ + I V++ + ++V DNGRGIP Sbjct: 55 RPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTG 114 Query: 120 N---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQ 176 P +S EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS L +TV R+ Sbjct: 115 VKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRE 174 Query: 177 NTIFSQKFSRGIP------------LSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDA 224 + +F RG P +SP+ RGT + F PD +IF + F Sbjct: 175 GKVHLMEFRRGFPQDRVLEMRNGFEVSPMAIVGDTEK-RGTEVHFLPDEEIFTNI-DFHY 232 Query: 225 ARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLIS 284 L K + ++L+ VK ++ E F + GG+K +++ + ++ Sbjct: 233 DVLAKRLRELSFLNNGVKIRLVDERNAKEDN-------FAYAGGVKGFVEFINTGKKVLH 285 Query: 285 SEIFTGKTEK--KGTHRGTVEWAIAWCEENPEI-TSYCNTILTDEGGTHESGLRVALTRG 341 IF +K + VE A+ W + E + N I +GGTH +GLR A+TR Sbjct: 286 GNIFHALGDKMSEFNTNIGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRV 345 Query: 342 IKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399 I KY E + K + I DD+ ++SV + EP+F+ QTK KLVS + + VE Sbjct: 346 INKYIEDNELAKKAKVEIAGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRGPVEEI 405 Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQ 458 + YL++NPI+A + ++E + R RK RE+ R+ + + LPGKLADC + Sbjct: 406 VGKLLTDYLLENPIDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 465 Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518 E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A EK+ + +I+ L+ Sbjct: 466 KDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVERARFEKLLTSNEILTLIT 525 Query: 519 ALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG + +Y + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H+++ P Sbjct: 526 ALGTSIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQP 585 Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601 PL+++ G + Y D L Sbjct: 586 PLYKVKLGKEEQYLKDGHELDAYL 609 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 ++ + + + + R+KGLGEM QL ET MD R LLRV+I+ + + Sbjct: 764 ADFREAMAWLMQQAENSVGRQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAI----E 819 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 820 ADRVFTMLMGDEVEPRRDFIETNALRAANID 850 >gi|209515895|ref|ZP_03264757.1| DNA gyrase, B subunit [Burkholderia sp. H160] gi|209503743|gb|EEA03737.1| DNA gyrase, B subunit [Burkholderia sp. H160] Length = 823 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 233/595 (39%), Positives = 342/595 (57%), Gaps = 33/595 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AG+ Sbjct: 4 MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 N I+V + + +++ DNGRG+P P +S EI++T LHAGGKFD ++Y++ Sbjct: 64 CNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198 SGGLHGVG+S VNALS L +TV R +F RG+P SP++ Sbjct: 124 SGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEVNGVTTSPMQVIGD 183 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 N RGT + F D IFG+ + L K + ++L+ V+ + E Sbjct: 184 TEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE----- 236 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E+F F GG+K +++ +N+S++ IF EK G VE A+ W + + Sbjct: 237 --EDFAFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGV---GVEVAMQWNDSYNENVLC 291 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N I +GGTH +GLR A+TR + KY + K + DD+ +LSV + Sbjct: 292 FTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVP 351 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F+ QTK KLVS + + VE + + +L++ P +A + +++ + R RK Sbjct: 352 EPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKA 411 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRG Sbjct: 412 REMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 471 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIAS 553 K+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI + Sbjct: 472 KVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRT 531 Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLLTFFY++M ++IE+ ++++ PPL++I G Y DE + G Sbjct: 532 LLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQG 586 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|326386061|ref|ZP_08207685.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326209286|gb|EGD60079.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 840 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 222/586 (37%), Positives = 351/586 (59%), Gaps = 23/586 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 +++Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AG+ +L Sbjct: 7 TPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDL 66 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYEISG 152 + + ++ +G ++V DNGRGIP + H + S E+I+T LHAGGKF D++ Y++SG Sbjct: 67 VLIEINPDGSVSVEDNGRGIPTDIHSE-EGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 125 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-----RNKRGTRI 207 GLHGVG+SVVNALS+ L +T+ R+ +F+ G P++PL + + + K+GTR+ Sbjct: 126 GLHGVGVSVVNALSEWLELTIWREGKEHWMRFAHGDPVAPLIVRGEAPIVGGKPKKGTRV 185 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 TF + F + +D +L + A+L+ V+ + K + Y+ G Sbjct: 186 TFFASHETFKNVTEYDFDKLEHRYRELAFLNSGVRILLRDKRREEVKEH-----DLYYEG 240 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCE-ENPEITSYCNTILTDE 326 G+ +++ N+ + + ++ G ++ A+ W + + + N I + Sbjct: 241 GIGAFVKYLDRNKLPLIPDPIAISADRDGI---GIDVALQWNDSYYENVLCFTNNIPQRD 297 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GGTH + R ALTR I YAE + K +++ DD+ I+SV + +P+F+ QTK Sbjct: 298 GGTHLAAFRAALTRTINGYAERSGLLKKEKVALSGDDMREGLTAIVSVKLPDPKFSSQTK 357 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTA 443 KLVS + ++ +E+ + D + +L +NP A +++ VI+ + R RK RE RK A Sbjct: 358 DKLVSSEVRQPLESLMADKMNEWLEENPAHARSVIQKVIDAAAAREAARKARELTRRKGA 417 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A Sbjct: 418 MDIASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERAR 477 Query: 504 SEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEM 563 ++I +++++ L+QA+G R ++ + LRY K++IMTDADVDGAHI +LLLTFF++++ Sbjct: 478 FDRIISSKEVGTLIQAMGTGIRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQL 537 Query: 564 YDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609 ++++Q HLF+ PPL+++ +G VY D L E G+ Sbjct: 538 PEIVKQGHLFIAQPPLYKVAKGRSEVYLKDNAALDNYLVEAGLSGR 583 Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +++E G+ + I R+KGLGEM A QL ET +D + R LL+V+I T + Sbjct: 757 QLVEAVFATGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRLLLQVKIED----ADVTDEI 812 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 + +LMG + R +FIQE A + ++ Sbjct: 813 LTRLMGDVVEPRREFIQENALNVANLD 839 >gi|301165375|emb|CBW24946.1| DNA gyrase subunit B [Bacteriovorax marinus SJ] Length = 817 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 209/580 (36%), Positives = 327/580 (56%), Gaps = 21/580 (3%) Query: 31 DSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI 90 ++ + + YDA I++LEGLE VR RPGMYIG T + LHH E++DNA+DE + Sbjct: 2 ETENTSISKVGEKYDADQIKVLEGLEAVRKRPGMYIGDTAVRGLHHCVYEIVDNAVDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS--TY 148 AGY I++ + + +TVVDNGRGIP + HP S E++ T LHAGGKF+ Y Sbjct: 62 AGYCTEIKIIIHVDNSVTVVDNGRGIPTDMHP-TEGCSAAELVYTKLHAGGKFNEDGGAY 120 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNK--RGTR 206 ++SGGLHGVG +VVNALS + + + + + + KF RG ++PL + + GT Sbjct: 121 KVSGGLHGVGAAVVNALSKWVKMEIKKHGKLHAVKFERGEAVAPLAVIGDLEDPKITGTA 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF+PD +IF F+ L + A+L+ + ++ +K+ F + Sbjct: 181 VTFKPDNEIFEV-HEFNYDTLANRFREMAFLNKGLNISLKDERS-------DKKDVFCYE 232 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITS-YCNTILTD 325 GG+ ++ ++ + ++ ++ VE A+ W + E+ S Y N I T Sbjct: 233 GGIAEFVTYLNRAKTAVHKKVIAFSQARED---YEVEVAMQWTDSYSEVLSGYANAICTP 289 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKR--AISIISDDLMISAVGILSVFIREPEFAGQT 383 GGTH SG + A+TR + YA+ + ++ DD+ I+S+ + E +F GQT Sbjct: 290 GGGTHISGFKTAITRVLNAYAKDNNLLKGLKSNLTGDDMREGLTAIISIKLPELQFEGQT 349 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEW-VIERSEERLRRRKQREVNRKT 442 K KL + + + V + + + YL +NP A +++ V + R+ + RK+ Sbjct: 350 KDKLGNSEVEGIVNSLVGEQLKQYLEENPSLAKTIIKKSVDAAAAREAARKARELTRRKS 409 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGK+ADC + +E++IVEGDSAGGSAKQ R+R QAVLPL+GKILNV A Sbjct: 410 ALVVSGLPGKMADCQEKDPARSEIYIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKA 469 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ N +I +VQA+G + Q+ + LRY K++IMTDADVDG+HI +L+LT Y+ Sbjct: 470 RYDKMLANNEIKMIVQAMGTGVGKEQFDIKKLRYHKIVIMTDADVDGSHIRTLILTLLYR 529 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 + +L+E ++++ PPLF+ +G Y DE+ + L Sbjct: 530 QFPELVENGYVYIAQPPLFKYKKGKAERYLKDEKELEAFL 569 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + E GK I R+KGLGEM QL ET M+ + RTLL+V I + + Sbjct: 732 LNEFAEHIIVDGKQGAYIQRYKGLGEMNPEQLWETTMNPDNRTLLQVRIEDTI----EAD 787 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +F++E A + ++ Sbjct: 788 QVFSVLMGDNVEPRRQFVEENALNVRNLD 816 >gi|330814959|ref|YP_004358664.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3] gi|327367352|gb|AEA58708.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3] Length = 825 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 236/598 (39%), Positives = 339/598 (56%), Gaps = 33/598 (5%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90 + +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE + Sbjct: 2 TEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNST 147 AGY N I V++ + +++ DNGRGIP + P +S EI++T LHAGGKFD ++ Sbjct: 62 AGYCNDIHVTIHADNSISITDNGRGIPTDVKMDDKHEPKRSAAEIVMTELHAGGKFDQNS 121 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEK 195 Y++SGGLHGVG+S VNALS L + V R +F RG+ +SP+ Sbjct: 122 YKVSGGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMAV 181 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 182 TGDTEN-RGTEVHFMADPTIFGTV-EYHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDD 239 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 F F GG+K +++ + +S++ IF EK G VE A+ W + Sbjct: 240 -------FAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGV---GVEVAMQWNDSYNEN 289 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY + K + DD+ +LSV Sbjct: 290 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSV 349 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R Sbjct: 350 KVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAA 409 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LP Sbjct: 410 RKAREMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILP 469 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 LRGK+LNV A +K+ +++QI+ LV ALGC + E LRY ++IIMTDADVDGAH Sbjct: 470 LRGKVLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAH 529 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 I +LLLTF Y++M ++IE+ ++++ PPLF+I G Y DE + G Sbjct: 530 IRTLLLTFLYRQMPEMIERGYVYIAQPPLFKIKAGKDERYLKDESELNAHMLRLALQG 587 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G +S D + ++ + + R+KGLGEM QL ET MD N R LL Sbjct: 728 IKRGERSQAVKD---FKGAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMDPNVRRLL 784 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV+I + LMG + + R FI+ A ++ Sbjct: 785 RVQIEDAI----AADGIFTTLMGDEVEPRRAFIESNALRAGNID 824 >gi|172059070|ref|YP_001806722.1| DNA gyrase subunit B [Burkholderia ambifaria MC40-6] gi|171991587|gb|ACB62506.1| DNA gyrase, B subunit [Burkholderia ambifaria MC40-6] Length = 824 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P++A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 794 DGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|329891030|ref|ZP_08269373.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568] gi|328846331|gb|EGF95895.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568] Length = 809 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 228/582 (39%), Positives = 337/582 (57%), Gaps = 23/582 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 + S Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ Sbjct: 2 TEQTAPSPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 A+L+ V+L+ +G +TV DNGRGIP H + S E+I+T LHAGGKFD ++Y++SGG Sbjct: 62 ADLVTVTLNEDGSVTVTDNGRGIPTAIHAE-EGISAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-------RNKRGTR 206 LHGVG+SVVNALSD L + + R S +F RG + L R GT Sbjct: 121 LHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTGTE 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF P F FD L + A+L+ V S + P + ++ Sbjct: 181 VTFFPSVTTFS-HIDFDLKTLEHRLRELAFLNSGVVIKLSDHR-----GAEPIEIMLHYE 234 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ +++ ++++ I ++ + +K G ++ A+ W + + + N I Sbjct: 235 GGVEAFVRHLDKSKTPILKDVIVIRGQKDGI---ELDLALWWNDSYHETMLCFTNNIPQR 291 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH S R +LTR + Y E + K ++ +D +LSV + +P+F+ QT Sbjct: 292 DGGTHLSAFRASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VE+ + + ++P+EA ++ +IE + R RK R+ RK+ Sbjct: 352 KDKLVSSEVRPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARKARDLTRRKS 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQARNR NQAVLPLRGKILNV A Sbjct: 412 ALEISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ ++ I L+ ALG + LRY K+I+M DADVDGAHI +LLLTFFY+ Sbjct: 472 RFDRMLSSDLIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 +M +LIE+ H+++ PPL+++++G + Y D+ L E Sbjct: 532 QMPELIERGHVYIAQPPLYKVSKGKQHRYVKDQAEMDAYLIE 573 Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats. Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L GK I I R+KGLGEM QL ET +DAN RTLL+V++ D D Sbjct: 727 DLLAAVLDAGKKGIAIQRYKGLGEMNPEQLWETTLDANARTLLQVKVEHG----DDADDL 782 Query: 659 INKLMGTKADERFKFIQERASFI 681 KLMG + R +FIQ+ A Sbjct: 783 FAKLMGDVVEPRREFIQDNALDA 805 >gi|332108198|gb|EGJ09422.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2] Length = 829 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 232/597 (38%), Positives = 343/597 (57%), Gaps = 30/597 (5%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAG 92 + +NQ+ ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AG Sbjct: 2 SDSNQTPPNDYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYE 149 Y + I V++ + ++V DNGRGIP P +S EI LT LHAGGKF+ ++Y+ Sbjct: 62 YCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHEPRRSAAEIALTELHAGGKFNQNSYK 121 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL-----------SPLEKKEK 198 +SGGLHGVG+S VNALS L +TV R + +F RG+ + K Sbjct: 122 VSGGLHGVGVSCVNALSKWLRLTVRRDGKVHRVEFKRGVTQDRVIEVRDGVETSPMKIVG 181 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 +KRGT + F PD +IF F L K + ++L+ VK ++ E Sbjct: 182 DTDKRGTEVHFLPDDEIFS-HVDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKEDN--- 237 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEI 315 F F GG+K +++ + + ++ +F EK + VE A+ W + + Sbjct: 238 ----FAFAGGVKGFVEFINQGKKVLHPNVFHAMGEKASEQGTTIGVEVAMQWNDSYSESV 293 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 + N I +GGTH +GLR A+TR I KY E + K + + DD+ ++SV Sbjct: 294 LCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVAGDDMREGLACVVSVK 353 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F+ QTK KLVS + + VE+ + +L++NP +A + +++ + R R Sbjct: 354 VPEPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPNDAKIICGKIVDAARAREAAR 413 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K RE+ R+ + + LPGKLADC + EL++VEGDSAGGSAKQ R+R QA+LPL Sbjct: 414 KAREMTRRKGVLDGIGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPL 473 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551 RGKILNV A EK+ ++ I+ L+ ALG + + LRY ++I+MTDADVDGAHI Sbjct: 474 RGKILNVEKARYEKLLSSDAIVTLITALGTGIGPEDFNVDKLRYHRIIVMTDADVDGAHI 533 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +LLLTFFY++M++L+E+ ++++ PPL+++ QG Y D + L + G Sbjct: 534 RTLLLTFFYRQMHELVERGYIYIAQPPLYKVKQGKHEQYLKDGQELDAFLLKVALDG 590 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ +G + R+KGLGEM QL ET MD N R LLRV+I + + Sbjct: 742 ADFRAAMDWLMVQAEGAVARQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIEDAI----E 797 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+ A ++ Sbjct: 798 ADRVFTMLMGDEVEPRREFIESNALRAGNID 828 >gi|206889996|ref|YP_002247871.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741934|gb|ACI20991.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 759 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 242/585 (41%), Positives = 344/585 (58%), Gaps = 18/585 (3%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYA 94 + ++Y A I+IL+GLE VR RP MYIG T + LHHL EV+DN++DE +AG+ Sbjct: 11 GGKVNKEESYKAEHIKILKGLEGVRTRPAMYIGSTGVEGLHHLVYEVVDNSVDEALAGFC 70 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKF-PNKSTLEIILTTLHAGGKFDNSTYEISGG 153 N IEV L +G +V+DNGRGIP E HP ++ LEI+LT LHAGGKF++ Y++SGG Sbjct: 71 NKIEVRLHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGG 130 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+SVVNALS+ L V V R + QK+ RGIP++ +E + GT+I F+ DP Sbjct: 131 LHGVGLSVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEK-TGTKIKFKADP 189 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF F L + +YL+ +K +++ EEF GG+ +++ Sbjct: 190 EIFEV-TEFSREILAHRFKELSYLNRGLKIILIDERD-------GYVEEFIKEGGIVSFV 241 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + + + + +K R VE AI + E EI ++ N I T EGGTH Sbjct: 242 EDLNKGKKPLHPKPIYITGQKD---RVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLV 298 Query: 333 GLRVALTRGIKKYAELTQNKRAISI--ISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G + ALTR I YA L + +D+ VG++SV I EP+F GQTK KL + Sbjct: 299 GFKSALTRTINSYAMLNGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNS 358 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE L + +L +NP A +++E + + R +K +E RK + L Sbjct: 359 EVKGIVETILNEKLSRWLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTL 418 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC++ ELFIVEGDSAGGSAKQAR+R +QAVLPLRGKILNV A +K+ Sbjct: 419 PGKLADCTEKDPSHAELFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLT 478 Query: 510 NQQIMDLVQALGCRTRSQYR-EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 +++I L+ A+G ++ E++RY K+I+MTDADVDGAHI +LLLTFFY++M LIE Sbjct: 479 SEEIKTLITAIGGGIGKEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIE 538 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIE 613 + +L++ PPL+RI +G Y E+ + L + IE Sbjct: 539 KGYLYIAQPPLYRIKRGKWERYIQTEDEFHEFLMDIAVDEISFIE 583 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Query: 580 FRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 + I T++V ++ + K + I R+KGLGEM QL ET MD KRT Sbjct: 660 YIIRIKTEAVKTKS---LWELYNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRT 716 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LL+V + + + LMG + + R +FI A + ++ Sbjct: 717 LLQVTVED----AQRANEIFTILMGDEVEPRKEFIVRHALEVRNLD 758 >gi|154250463|ref|YP_001411287.1| DNA gyrase subunit B [Parvibaculum lavamentivorans DS-1] gi|154154413|gb|ABS61630.1| DNA gyrase, B subunit [Parvibaculum lavamentivorans DS-1] Length = 814 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 245/580 (42%), Positives = 347/580 (59%), Gaps = 22/580 (3%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAG 92 + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG Sbjct: 2 TTPADDTPEEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALAG 61 Query: 93 YANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISG 152 Y + + V L+ +G +TV+DNGRGIPVE H K S E+I+T LHAGGKFD ++Y++SG Sbjct: 62 YCDAVNVRLNADGSVTVMDNGRGIPVEIH-KGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120 Query: 153 GLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------RNKRGTR 206 GLHGVG+SVVNALSD L + + R +F G+P +PLE + GT Sbjct: 121 GLHGVGVSVVNALSDWLEMRIWRAGKEHRIRFQHGVPDAPLEATGPAPIGADGKPVTGTE 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 ITF P + F FD A L + A+L+ VK + + P++ + + Sbjct: 181 ITFHPSSETFTQT-EFDFATLEHRLRELAFLNSGVKINLTDHR-----GVEPKEVKLMYE 234 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILTD 325 GGL+ +++ ++ + + + E++G TVE A+ W + E + N I Sbjct: 235 GGLEAFVRFLDRTKAPLIQKPIAIRAEREGI---TVEVAMWWNDSYHENVLCFTNNIPQR 291 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +G R ALTR I YA + K +S+ DD +LSV + +P+F+ QT Sbjct: 292 DGGTHLAGFRGALTRVINSYANESGIAKKEKVSLTGDDAREGLTCVLSVKVPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKT 442 K KLVS + + VE + D +L ++P EA +++ V+E + R RK RE RK Sbjct: 352 KDKLVSSEVRPVVEGLVNDALSTWLEEHPAEARQVVTKVVEAAAAREAARKARELTRRKG 411 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 A+ LPGKLADC + +ELFIVEGDSAGGSAKQAR+RSNQAVLPLRGKILNV A Sbjct: 412 ALDVSSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARDRSNQAVLPLRGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ ++ +I L+ ALG R + + LRY K+IIMTDADVDGAHI +LLLTFFY+ Sbjct: 472 RFDKMLSSNEIGTLITALGAGIGRDDFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M ++IE+ HL++ PPL+++ +GT Y +E+ L Sbjct: 532 QMPEVIERGHLYIAQPPLYKVRRGTSETYLKNEKALGDYL 571 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++L+ G + R+KGLGEM QL ET +D + R+LL+V+I L D D Sbjct: 731 QLLDAVMAAGTKGNTVQRYKGLGEMNPGQLWETTLDRDARSLLQVKI----RELDDADDL 786 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 KLMG + R FI+E A + ++ Sbjct: 787 FVKLMGDVVEPRRDFIRENALNVANLD 813 >gi|56477036|ref|YP_158625.1| DNA gyrase subunit B [Aromatoleum aromaticum EbN1] gi|56313079|emb|CAI07724.1| DNA gyrase (Subunit B) [Aromatoleum aromaticum EbN1] Length = 831 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 343/594 (57%), Gaps = 36/594 (6%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 D YD SSI+ LEGLE VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I ++ Sbjct: 14 DAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIVIT 73 Query: 101 LDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 + + ++V DNGRGIPV P +S EI++ LHAGGKF+ ++Y++SGGLHGV Sbjct: 74 IHADNSISVADNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNQNSYKVSGGLHGV 133 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKVRNKRGT 205 G+S VNALS LH+TVAR +F G+P +SP+ + RGT Sbjct: 134 GVSCVNALSKWLHLTVARDGKKHFIEFHHGVPQNRVIELVDGVEVSPMRITGETTK-RGT 192 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 R+ + D +IFG + L K + ++L+ VK + E E+F F Sbjct: 193 RVHYLADEEIFGTV-EYHYEILAKRLRELSFLNNGVKIRLVDQRSGKE-------EDFAF 244 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKG------THRGTVEWAIAWCEEN-PEITSY 318 GG+K +++ +S++ +F + VE A+ W + ++ Y Sbjct: 245 AGGVKGFVEYINRTKSVLHPTVFYAAGTTRIPTGHGHDAELGVEVAMQWNDSYAEQVLCY 304 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY E + K + I DD+ +LSV + + Sbjct: 305 TNNIPQADGGTHLTGLRAAMTRIINKYIEEHEIAKKAKVDITGDDMREGLACVLSVKMPD 364 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+FA QTK KLVS +A+ VE + + +L +NP++A + ++E + R RK R Sbjct: 365 PKFASQTKMKLVSSEARPAVEEVVANKLTDFLQENPLDAKTICAKIVEAARARDAARKAR 424 Query: 437 EVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E+++VEGDSAGGSAKQ R+R QA+LPL+GK Sbjct: 425 EMTRRKGLLDGVGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 484 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554 ILNV A +K+ +Q+I ++ ALG + Y+ E LRY ++IIMTDADVDGAHI +L Sbjct: 485 ILNVEKARFDKLLQSQEIATMITALGTGIGKDDYKPEKLRYHRIIIMTDADVDGAHIRTL 544 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M +L+E+ H+++ PPL++I G +Y DE + L + G Sbjct: 545 LLTFFYRQMPELVERGHIYIAQPPLYKIKHGKNEMYIKDENALNQHLLKLALDG 598 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + + + + R+KGLGEM QL ET MD R LL Sbjct: 734 IRRGEKSH---PITRFSEAIRWLLGEVERGLTKQRYKGLGEMNPEQLWETTMDPAVRRLL 790 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V+I+ + + LMG + R FI+ A + ++ Sbjct: 791 KVQIDDAI----AADEIFTTLMGDNVEPRRAFIEGNALYARNID 830 >gi|163797313|ref|ZP_02191266.1| Type IIA topoisomerase [alpha proteobacterium BAL199] gi|159177404|gb|EDP61960.1| Type IIA topoisomerase [alpha proteobacterium BAL199] Length = 815 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 224/586 (38%), Positives = 341/586 (58%), Gaps = 18/586 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMD 87 ++ S+ YDA SI++L GL+ VR RPGMYIG TD+ LHH+ EV+DNA+D Sbjct: 2 ADETLPENGNGGSNGYDADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID 61 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST 147 E +AGY + + V+L+G+G +TV DNGRGIPV+ H + S ++I+T LHAGGKFD ++ Sbjct: 62 EALAGYCDAVMVTLNGDGSVTVSDNGRGIPVDMHSE-EGMSAAQVIMTQLHAGGKFDQNS 120 Query: 148 YEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRI 207 Y++SGGLHGVG+SVVNALS+ L + + R +F G+P + L + GT + Sbjct: 121 YKVSGGLHGVGVSVVNALSEILDLRIWRDGKEHFMRFRHGVPEADLVVVGPAP-QTGTEV 179 Query: 208 TFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPG 267 TF+P F FD L + A+L+ V+ + D+ K + ++ G Sbjct: 180 TFKPSKATFT-MVDFDLPTLEHRLRELAFLNSGVRILLTDDRTAESKT-----VDLHYEG 233 Query: 268 GLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDE 326 GL+ ++ R + + E+ G TVE A+ W + + + N I + Sbjct: 234 GLQAFVTYLDRARHPLHPTLMM-SGERDG---MTVEVAMEWTDSYHETMLCFTNNIPQKD 289 Query: 327 GGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTK 384 GG H +G R ALTR + YA+ + K +++ DD +LSV + +P+F+ QTK Sbjct: 290 GGAHLAGFRAALTRQVNSYAQSSGIAKKEKVTLSGDDAREGLTCVLSVKVPDPKFSSQTK 349 Query: 385 TKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA- 443 KLVS + + VEN + D + ++P +A +++ E + R R+ R++ R+ Sbjct: 350 DKLVSSEVKPVVENIVADKLQQWFEEHPADAKRVVAKAYEAAAAREAARRARDLTRRKGV 409 Query: 444 IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAG 503 + LPGKLADC + ELF+VEGDSAGGSAKQ R+R +QA+LPLRGKILNV A Sbjct: 410 LDIANLPGKLADCQERDPAKAELFLVEGDSAGGSAKQGRHRKSQAILPLRGKILNVERAR 469 Query: 504 SEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQE 562 +K+ +Q+I L+ ALG ++ LRY ++IIMTDADVDG+HI +LLLTFF+++ Sbjct: 470 FDKMLASQEIGTLIAALGTSIGPEEFDITKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQ 529 Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 M +L+E+ +L++ PPL+R+ +G + Y D+ ++ L + G Sbjct: 530 MPELLERGYLYIAQPPLYRVKRGNEETYLKDDRALERFLIDEGTKG 575 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 ++E G+ + ++R+KGLGEM QL ET +D ++RTLL+V++ + Q+ Sbjct: 733 LIEAVFAIGRKGLTVNRYKGLGEMNPGQLWETTLDPDRRTLLQVKVAH----ADEAQEVF 788 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R +FIQ A + ++ Sbjct: 789 STLMGDVVEPRREFIQTNALKVANLD 814 >gi|115350059|ref|YP_771898.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD] gi|115280047|gb|ABI85564.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD] Length = 824 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P++A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|56475776|ref|YP_157365.1| DNA topoisomerase IV subunit B [Aromatoleum aromaticum EbN1] gi|56311819|emb|CAI06464.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Aromatoleum aromaticum EbN1] Length = 658 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 241/663 (36%), Positives = 342/663 (51%), Gaps = 28/663 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +YD SS R+L+GLEPVR RPGMY T + H+ EVIDNA DE + G+A I Sbjct: 2 TGKQHYDESSFRVLKGLEPVRERPGMY---TRTDSPAHIIQEVIDNAADEALGGFAKKIH 58 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFD----NSTYEISGGL 154 V+L +G ++V D+GRGIPV HP + + T LHAGGKFD N Y SGGL Sbjct: 59 VTLHLDGSISVADDGRGIPVGLHP-DERVPVVVLAFTRLHAGGKFDKRDGNGAYAFSGGL 117 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSR-GIPLSPLEKKEKVRNKRGTRITFRPDP 213 HGVG++V NALS + V V R+ I +FS G + + + GTR+ PD Sbjct: 118 HGVGVAVTNALSTRVEVEVRREGKIHRIEFSDGGEKVGAITVAGDCGRQSGTRVRVWPDA 177 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 K F L ++ +SKA L V ++ G L+ Sbjct: 178 KYFEAPRVPQGE-LERLLRSKAVLLPGVSVRLDIEQAGGAALTKTWTYPEGLAGYLREQA 236 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESG 333 L + E + GK + WA+AW E S+ N I T GGTHESG Sbjct: 237 GDIEAVAPLYTGEKYAGKDDPAYAPGEGAAWALAWFEHTVPSESFVNLIPTVAGGTHESG 296 Query: 334 LRVALTRGIKKYAELT-QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 LR + +K + E R + + +D+ +LS + +P+F GQ K KL S +A Sbjct: 297 LRAGVFDAVKSFIEHHALLPRGVKLQQEDVCGRMSFVLSARLLDPQFQGQVKEKLNSREA 356 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGK 452 + V + +RDPF+ +L + + E I ++ R + ++ E + + + L PGK Sbjct: 357 VKLVSSMIRDPFEIWLNNHVEAGRAIAELSIRQALARQKSAQKVEKRKTSGVAVL--PGK 414 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 L+DC ELF+VEGDSAGGSAK ARN+ QA+LPLRGK+ N +++ N + Sbjct: 415 LSDCESEDLADNELFLVEGDSAGGSAKMARNKETQAILPLRGKVQNSWEIDPDRLLANAE 474 Query: 513 IMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQ 569 I D+ ALG + D LRY KV+IM+DADVDGAHI +LLLT F++ +LI + Sbjct: 475 IHDIAVALGVDAHAAGSTPDLSGLRYGKVVIMSDADVDGAHIQTLLLTLFFRHFPELIAR 534 Query: 570 KHLFLISPPLFRIT---QGTK----SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKGL 620 H+ + PPL+R+ QG K +YA D+ I + +K G IE+ RFKGL Sbjct: 535 GHIHVAQPPLYRVDVPAQGKKRPARRLYALDDGELAAIRDRLEKEGFKPDAIEVGRFKGL 594 Query: 621 GEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERAS 679 GEM QL+ET MD R +L VE+ ++L DT LMG +A R +++ + Sbjct: 595 GEMNPDQLRETTMDPATRRVLPVEV--RADALDDTLKMFTLLMGKGEASGRRAWMEAKGD 652 Query: 680 FID 682 ++ Sbjct: 653 SVE 655 >gi|206558823|ref|YP_002229583.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315] gi|198034860|emb|CAR50732.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315] Length = 824 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 236/594 (39%), Positives = 340/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + +S + +F EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ PI+A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQG 587 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 ADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----A 792 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 ADGIFTTLMGDDVEPRRAFIESNALRAGNID 823 >gi|170697756|ref|ZP_02888843.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10] gi|170137371|gb|EDT05612.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10] Length = 824 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 235/594 (39%), Positives = 339/594 (57%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 +Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V++ + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP+ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPMLVTGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + ++ + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P++A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQG 587 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMDPAVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|119475239|ref|ZP_01615592.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143] gi|119451442|gb|EAW32675.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143] Length = 804 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 227/570 (39%), Positives = 335/570 (58%), Gaps = 20/570 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 + ++YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ ++ Sbjct: 2 TDSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSI 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I V + + ++V D+GRGIP E H S E+I+T LHAGGKFD++TY++SGGLHG Sbjct: 62 IRVVIHPDESVSVSDDGRGIPTEMHE--EGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+EL +T+ R +F Q + G+P PL GT + F+P F Sbjct: 120 VGVSVVNALSEELKLTIRRGGKLFEQVYKHGVPQKPLAVVGDA-ETSGTELRFKPSSGTF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F +L K + A+L+ V ++ + E F++ GGL ++ Sbjct: 179 TNI-QFHFDQLAKRLRELAFLNSGVNIELKDERS-------GKAETFFYEGGLSEFVSYL 230 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ I+ G VE A+ W + I Y N I +GGTH +G R Sbjct: 231 NTNKTPINKLFHFNIM---GEGDVGVEVALQWNDSFQEGIFCYTNNIPQRDGGTHLAGFR 287 Query: 336 VALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E + DD ++SV + +P+F+ QTK KLVS + + Sbjct: 288 AALTRSLNAYIEREGLAKRAKVSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVK 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGK 452 VE A+ F YL++NP EA ++ +I+ + R RK RK A+ LPGK Sbjct: 348 TIVEQAMNQAFGDYLLENPGEAKLVVTKMIDAARAREAARKARDMTRRKGALDIAGLPGK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + +E+++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ + Sbjct: 408 LADCQEKDPALSEVYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVE 467 Query: 513 IMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + +V+ALGC + LRY +IIMTDADVDG+HI +LLLTFF+++M +LIE+ H Sbjct: 468 VGTIVKALGCGIGRSEFNADKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGH 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +F+ PPL++I +G + Y DE+ K+ L Sbjct: 528 IFIAQPPLYKINRGKQQQYIKDEDGKEAYL 557 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ ++ + + I R+KGLGEM QL ET MD + R +L Sbjct: 707 IQRGEKTEEI---NDFGDAIDWLMIQAERGLSIQRYKGLGEMNPDQLWETTMDPDVRRML 763 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RV I + LMG + + R +FI+E A + ++ Sbjct: 764 RVTIEDAIT----ADQIFTTLMGDQVEPRREFIEENALKVANLD 803 >gi|323699691|ref|ZP_08111603.1| DNA gyrase, B subunit [Desulfovibrio sp. ND132] gi|323459623|gb|EGB15488.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans ND132] Length = 799 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 232/571 (40%), Positives = 330/571 (57%), Gaps = 19/571 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + Y+A SI +LEGLE VR RP MYIG TD + LHHL EVIDN++DE +AGY + I+V Sbjct: 2 SEKQYNAESITVLEGLEAVRKRPAMYIGSTDIRGLHHLVYEVIDNSIDEAMAGYCDKIKV 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L + TV DNGRGIPV+ HPK +++ +TTLHAGGKFDN +Y++SGGLHGVG+ Sbjct: 62 TLHMDNSCTVTDNGRGIPVDIHPK-EKIPAVQVAMTTLHAGGKFDNDSYKVSGGLHGVGV 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 S VNALS+ + TV R + KF RG + LE+ + GT FRPD IF Sbjct: 121 SCVNALSEFMETTVKRDGKTWRMKFERGHVVKGLEEVGPA-DSTGTSQRFRPDEDIFEV- 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD L K + AYL+ ++ + ++ + E F F GG+K Y++ N Sbjct: 179 NQFDYDVLRKRFKELAYLNSGLEIEFKDER-----NPESKPEIFKFTGGIKQYVKDINSN 233 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + I EI G+ E + VE+A+ + ++ N I T EGGTH +G + AL Sbjct: 234 LTTIG-EIVYGEGESEN---MLVEFALQYTASYKENTYTFANNIRTIEGGTHLAGYKTAL 289 Query: 339 TRGIKKYAELTQNKRAI--SIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 TR I Y + + + + DD+ ++SV + P+F GQTKTKL + +A V Sbjct: 290 TRAINSYIQSADLPKKLIQKLTGDDVREGLTSVISVKLPNPQFEGQTKTKLGNSEAAGLV 349 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + D + + +NP EA ++E V++ + R RK R+ V RK A+ LPGKLAD Sbjct: 350 AGVIYDKLNTFFEENPKEARFIIEKVVDAARAREAARKARDLVRRKGALSDNALPGKLAD 409 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +E+F+VEGDSAGGSAKQ R+ QA+LPLRGKILNV +K+ N++I Sbjct: 410 CQSKSPEDSEIFLVEGDSAGGSAKQGRDPKIQAILPLRGKILNVEKTRLDKMLGNKEIRA 469 Query: 516 LVQALGCRTRSQY---REEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 ++ A G + LRY K++IMTDADVDG+HI +LLLTFF+++ +LI + H+ Sbjct: 470 MITAFGIGIGHEEDEKDYSKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQYEELINRGHI 529 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 ++ PPL+R ++G + D+ L E Sbjct: 530 YIAQPPLYRASKGKFERFIKDDVELDNFLLE 560 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 ++EE + I R+KGLGEM QL ET M+ RT+LRV I Sbjct: 718 YDAVIEEAHR----GWSIQRYKGLGEMNPEQLWETTMNPENRTMLRVTIED----AAAAN 769 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 D LMG + R +FI++ A + ++ Sbjct: 770 DIFVDLMGDNVEPRREFIEKNALAVQELD 798 >gi|295675104|ref|YP_003603628.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002] gi|295434947|gb|ADG14117.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002] Length = 823 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 233/595 (39%), Positives = 341/595 (57%), Gaps = 33/595 (5%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGY 93 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AG+ Sbjct: 4 MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEI 150 N I+V + + +++ DNGRG+P P +S EI++T LHAGGKFD ++Y++ Sbjct: 64 CNDIQVIIHADNSVSITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSYKV 123 Query: 151 SGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEK 198 SGGLHGVG+S VNALS L +TV R +F RG+P SP+ Sbjct: 124 SGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVVTSPMPVIGD 183 Query: 199 VRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIP 258 N RGT + F D IFG+ + L K + ++L+ V+ + E Sbjct: 184 TEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE----- 236 Query: 259 EKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITS 317 E+F F GG+K +++ +N+S++ IF EK G VE A+ W + + Sbjct: 237 --EDFAFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGV---GVEVAMQWNDSYNENVLC 291 Query: 318 YCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIR 375 + N I +GGTH +GLR A+TR + KY + K + DD+ +LSV + Sbjct: 292 FTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVP 351 Query: 376 EPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ 435 EP+F+ QTK KLVS + + VE + + +L++ P +A + +++ + R RK Sbjct: 352 EPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKA 411 Query: 436 REVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRG 494 RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPLRG Sbjct: 412 REMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRG 471 Query: 495 KILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIAS 553 K+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI + Sbjct: 472 KVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRT 531 Query: 554 LLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLLTFFY++M ++IE+ ++++ PPL++I G Y DE + G Sbjct: 532 LLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQG 586 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|83945027|ref|ZP_00957393.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633] gi|83851809|gb|EAP89664.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633] Length = 800 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 241/575 (41%), Positives = 348/575 (60%), Gaps = 18/575 (3%) Query: 37 NQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYAN 95 +++ + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ + Sbjct: 2 SETPNQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHCS 61 Query: 96 LIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLH 155 + V L +G +V D+GRGIP + H + S ++I+T LHAGGKFD ++Y++SGGLH Sbjct: 62 QVTVCLHADGSASVTDDGRGIPTQIHAE-EGVSAAQVIMTQLHAGGKFDQNSYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL--EKKEKVRNKRGTRITFRPDP 213 GVG+SVVNALSD L +T+ R + +F RG P + + K+GT++ F P Sbjct: 121 GVGVSVVNALSDWLDLTIWRNGREHTMRFRRGDPENGQDLREVGDANGKKGTQVRFMPSE 180 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 + F D F+ ARLL + A+L+ VK ++E P +E + GG+ ++ Sbjct: 181 ETFSDIV-FERARLLHRLRELAFLNSGVKIVLRDEREA-----EPFEEVLEYEGGVAAFV 234 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332 Q ++ I + E++G +EW ++ E + + N I +GGTH + Sbjct: 235 QHLDRTKTPIFPDPVLITGEREGVTVEAALEWNDSYHEN---VLCFTNNIPQRDGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 G R ALTR I +YA + K +SI DD +LSV + +P+F+ QTK KLVS Sbjct: 292 GFRGALTRVINQYAGNSGIAAKSKVSITGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSS 351 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRL 449 + + VE+A+ D + ++P+EA +++ ++E + R RK RE RK+A+ L Sbjct: 352 EVRPAVESAVYDTLTEWFEEHPVEAKQIVSKIVEAAAAREAARKARELTRRKSALDITSL 411 Query: 450 PGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRN 509 PGKLADC Q +ELFIVEGDSAGGSAKQ R+R NQAVLPLRGKILNV A +K+ + Sbjct: 412 PGKLADCQQKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLS 471 Query: 510 NQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIE 568 + Q+ L+ ALG R Q + LRY KVIIMTDADVDGAHI +LLLTFFY++M +LIE Sbjct: 472 SDQVGTLITALGTGIGRDQIDYDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIE 531 Query: 569 QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 + HL++ PPL+++ +G Y D+ L E Sbjct: 532 RGHLYIAQPPLYKVMRGKSERYLTDQSEMDAFLIE 566 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 598 QKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQD 657 ++ + G ++I R+KGLGEM QL ET +D R+LLRV + + + Sbjct: 717 NALVSAVQAAGAKGLKIQRYKGLGEMNPDQLWETTLDPEARSLLRVSVTE----ADTADE 772 Query: 658 SINKLMGTKADERFKFIQERASFID 682 +KLMG + R FIQE A + Sbjct: 773 LFSKLMGDVVEPRRDFIQEFALEAE 797 >gi|3550425|gb|AAC34893.1| DNA gyrase B subunit [Methylovorus sp. SS1] Length = 799 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 220/568 (38%), Positives = 335/568 (58%), Gaps = 21/568 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 +YD+SSI+ILEGL+ VR RPGMYIG T D LHH+ EV+DNA+DE +AG+ + I+V + Sbjct: 3 DYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVII 62 Query: 102 DGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + +++ DNGRGIP + K +S EI++T LHAGGKFD ++Y++SGGLHGVG Sbjct: 63 HPDNSVSISDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVG 122 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALSD L + + R + +F RG + P+ ++GT + F + FG Sbjct: 123 VSVVNALSDWLRLKIYRNGQVHQMEFRRGEAVRPVAVTG-TTERKGTEVHFLASTETFGV 181 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + ++L+ VK + + E F GG++ +++ Sbjct: 182 V-EFHFEILAKRIRELSFLNNGVKIELIDQR-------NGKSENFAHSGGVRGFVEYMNR 233 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 +++++ + F EK G T+E ++ W + + + N I +GGTH +GLR A Sbjct: 234 SKTVLHPKPFYAVGEKDG---MTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTA 290 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 +TR + Y E + K I DD+ +LSV + EP+F+ QTK KLVS + Q Sbjct: 291 MTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPV 350 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 V+ + +L++NP++A + +I+ + R RK RK A+ + LPGKLA Sbjct: 351 VQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLA 410 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++Q+I Sbjct: 411 DCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIA 470 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 L+ A+G +++RY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 471 TLITAMGTGIGKDDFSADNVRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 530 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKIL 601 + PPL+++ QG Y D++ + L Sbjct: 531 IAQPPLYKVKQGKDERYLKDQQELDQYL 558 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G KS + + L+ K + I R+KGLGEM QL ET MD R LL Sbjct: 702 IKRGEKSQPVSN---FKAALDWLLDEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLL 758 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V+I+ + + LMG + + R FI+ A ++++ Sbjct: 759 KVQIDDAI----AADEIFTTLMGDQVEPRRAFIEGNALGVNNLD 798 >gi|296157627|ref|ZP_06840462.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1] gi|295892399|gb|EFG72182.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1] Length = 823 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 2 TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ N I+V + + +++ DNGRG+P P +S EI++T LHAGGKFD ++Y Sbjct: 62 GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196 ++SGGLHGVG+S VNALS L +T+ R +F RG+P +SP++ Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 + N RGT + F D IFG+ + L K + ++L+ V+ + + Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIRLTDQR------- 232 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315 ++E+F F GG+K +++ +N+S++ IF EK G VE A+ W + + Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 + N I +GGTH +GLR A+TR + KY + K + DD+ +LSV Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F+ QTK KLVS + + VE+ + + +L++ P +A + +++ + R R Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPL Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551 RGK+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +LLLTFFY++M ++IE+ ++++ PPLF+I G Y DE + + G Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + I R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|188590798|ref|YP_001795398.1| DNA gyrase subunit b [Cupriavidus taiwanensis LMG 19424] gi|170937692|emb|CAP62676.1| DNA gyrase, subunit B (type II topoisomerase) [Cupriavidus taiwanensis LMG 19424] Length = 841 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 229/594 (38%), Positives = 340/594 (57%), Gaps = 36/594 (6%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 N + Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 5 QNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 I+V++ + +++VDNGRGIP V+ K +S EI +T LHAGGKF+ ++Y++S Sbjct: 65 TEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195 GGLHGVG+S VNALS L +TV R + +F++G + K Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGEVQNRIIETVDGPDGQPVEVSPMK 184 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 +KRGT + F D +IF + F L K + ++L+ V + + Sbjct: 185 ITGATDKRGTEVHFLADEEIFTNV-EFHYEVLSKRIRELSFLNNGVHIKLTDQR------ 237 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 ++E+F F GG+K +++ ++ + IF EK G VE A+ W + + Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRAKTTLHPNIFYANAEKDGI---AVEVAMQWNDGYNEQ 293 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY E + K + DD+ +LSV Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSV 353 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + +L++ P +A + +++ + R Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVSKALTDFLLETPADAKTICGKIVDAARAREAA 413 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + +ELF+VEGDSAGGSAKQ R+R QA+LP Sbjct: 414 RKAREMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILP 473 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 L+GKILNV A +K+ ++Q+++ L+ ALG + LRY ++IIMTDADVDG+H Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 I +LLLTFFY++M D+IE+ ++++ PPL++I G + Y D+ L + Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKL 587 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 ++ + + R+KGLGEM QL ET +D +R LL+V+I + Sbjct: 752 TVNDFHGAMQWLLAEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAI--- 808 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 809 -AADQIFTTLMGDEVEPRRNFIESNALVARNID 840 >gi|296115232|ref|ZP_06833873.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978333|gb|EFG85070.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769] Length = 839 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 227/609 (37%), Positives = 346/609 (56%), Gaps = 26/609 (4%) Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62 D ++ S + S + + EIP + A +YDA+SI +L+GL+ VR RP Sbjct: 9 DPVVEHLSGMSDPSNPDQKHDAEGEEIPVTGA--------DYDAASISVLKGLDAVRKRP 60 Query: 63 GMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH 121 GMYIG TD+ LHH+ E+IDNA+DE AGYA V+L+G+G +TV DNGRGIP + H Sbjct: 61 GMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATTCIVTLNGDGSVTVRDNGRGIPTDMH 120 Query: 122 PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFS 181 + S E++LT LHAGGKF+ ++Y++SGGLHGVG +VVNALS+ + V + R Sbjct: 121 HE-EGISAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHM 179 Query: 182 QKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRV 241 +F G +PL RGT++TF+P + F F + L + + A+L+ + Sbjct: 180 IRFRAGERDAPLSVVGDSDEPRGTQVTFKPSAETFA-IVEFQFSVLERRLRELAFLNSGL 238 Query: 242 KTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGT 301 ++ + E F++ GGL +++ ++ I TG + + Sbjct: 239 AIILRDERHTPVRE-----EAFHYEGGLSAFVEWLDHGKTPIVEPPITGSLQNEDN-GIK 292 Query: 302 VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISII-S 359 VE+A+ W + + + N I +GG+H +G R ALTR + +YAE +K+ + Sbjct: 293 VEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRIVGRYAEANASKKDSHALAG 352 Query: 360 DDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLL 419 +D+ +LSV + +P+F+ QTK KLVS + Q V A D H+ +P EA +++ Sbjct: 353 EDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMISHWFETHPKEARQIV 412 Query: 420 EWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSA 478 V++ + R R+ RE+ R+ + LPGKLADC + +ELFIVEGDSAGG+A Sbjct: 413 AKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPAKSELFIVEGDSAGGTA 472 Query: 479 KQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT------RSQYREED 532 KQ R+R QA+LPL+GKILNV A +++ + +I L+ ALG + E Sbjct: 473 KQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGIGRGDVEHGGFSIEK 532 Query: 533 LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAH 592 LRY +++IMTDADVDG+HI +LLLTFF+++M +LIE +L++ PPL+R +G Y Sbjct: 533 LRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIENGYLYIAQPPLYRAKRGNDERYLK 592 Query: 593 DEEHKQKIL 601 D+ ++ L Sbjct: 593 DDAALEQYL 601 Score = 117 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%) Query: 602 EEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINK 661 E G+ + I+RFKGLGEM +QL ET +D RTLL+V + N+ + + Sbjct: 759 ERIIAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGDVENAAQ----VFST 814 Query: 662 LMGTKADERFKFIQERASFIDDVG 685 LMG + R FI A + ++ Sbjct: 815 LMGDVVEPRRDFIVGNALKVANLD 838 >gi|291278436|ref|YP_003495271.1| DNA gyrase subunit B [Deferribacter desulfuricans SSM1] gi|290753138|dbj|BAI79515.1| DNA gyrase, B subunit [Deferribacter desulfuricans SSM1] Length = 789 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 234/566 (41%), Positives = 339/566 (59%), Gaps = 17/566 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEV 99 + ++Y+ SI++LEGLE VR RPGMYIG D + LHHL EV+DN++DE AG+ I + Sbjct: 2 SKNSYNEESIKVLEGLEAVRQRPGMYIGSVDHRGLHHLIYEVVDNSIDEASAGFCKNISI 61 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 ++ + +T+ D+GRGIPV HP K T+E+++TTLHAGGKF+ Y SGGLHGVGI Sbjct: 62 TIHIDNSVTIEDDGRGIPVGIHPTM-KKPTVEVVMTTLHAGGKFEKGAYYASGGLHGVGI 120 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ L VTV R +F Q++ +G P++ LEK K GT+I FRPD IF D Sbjct: 121 SVVNALSEFLEVTVKRDGGVFFQRYEKGKPVTKLEKIGKSNK-TGTKIRFRPDIDIFED- 178 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 F L K + AYL+ VK ++ ++ I +K+EF+ GG+ +Y++ + Sbjct: 179 LDFSHDVLQKRFRELAYLNPGVKITFNDER-------IDKKQEFFAEGGIVSYVKYLNKT 231 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 ++ + E K + +VE A + + +I S+ N I T EGGTHE+G + A Sbjct: 232 KNTLLKEPVFIKGIHEDV---SVEIAFTYNDGYNEQILSFVNNIHTHEGGTHEAGFKNAY 288 Query: 339 TRGIKKYAELTQ-NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVE 397 TR + K+ +S+ DD+ ++SV + +P F GQTK KL S A+ VE Sbjct: 289 TRIFNNFIAKNNLLKQKVSLTGDDIREGLSAVISVRLHDPIFEGQTKGKLGSTTAKTAVE 348 Query: 398 NALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADC 456 N + + +N +L+ ++ R RK +E RK A+ LPGKLADC Sbjct: 349 NVMNSTLPDFFEKNINYVKIILDKALQAYRAREAARKAKELTRRKNALEISTLPGKLADC 408 Query: 457 SQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDL 516 + ELFIVEGDSAGGSAKQ R+R QA+LPL+GKI+NV A +KI +N +I + Sbjct: 409 QEKDPDKAELFIVEGDSAGGSAKQCRDRRFQAILPLKGKIINVEKARFDKILSNDEIKAM 468 Query: 517 VQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLI 575 + ALG + +RY+K+IIMTDADVDGAHI +LLLTFFY+ + ++IE+ +L++ Sbjct: 469 ITALGTGIGHKNFDINKIRYKKIIIMTDADVDGAHITTLLLTFFYRYLREIIERGYLYIA 528 Query: 576 SPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+++ +G Y HDE+ + + Sbjct: 529 RPPLYKVKKGKTEKYIHDEKEMEDFI 554 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 18/129 (13%) Query: 563 MYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEH------KQKILEEFKKHGKGKIEISR 616 +L ++ L + PL G + + +++E ++ G + + R Sbjct: 672 FREL-KRNFLKIK--PL-----GKRPFEITIDGEKSVFDTYDEMMESLEEIGLKGVYVQR 723 Query: 617 FKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQE 676 +KGLGEM QL ET +D +R L +V+I + + + LMG R +FI+E Sbjct: 724 YKGLGEMNPQQLWETTVDPERRVLYKVKIED----AEAADELFSLLMGDVVGPRREFIEE 779 Query: 677 RASFIDDVG 685 A + ++ Sbjct: 780 NALNVKNLD 788 >gi|33519500|ref|NP_878332.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus] gi|33517163|emb|CAD83545.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus] Length = 806 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 232/566 (40%), Positives = 341/566 (60%), Gaps = 19/566 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVS 100 +YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DEVI+GY N I V+ Sbjct: 3 SSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEVISGYCNKILVT 62 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 + + ++V D+GRGIP H + S E+I+T LHAGGKFDN+ Y++SGGLHGVG+S Sbjct: 63 IHQDNSVSVKDDGRGIPTGLHEE-SGISAAEVIMTVLHAGGKFDNTNYKVSGGLHGVGVS 121 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VVNALS++L + + R I+ Q F G P SPL + + GT I F P+ IF +K Sbjct: 122 VVNALSEKLELIIERDFKIYKQVFYLGKPKSPLSVVGESKK-SGTMIRFWPNLHIFTNKT 180 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L + + A+L+ V + E + FY GG+K +++ + Sbjct: 181 EFQYEILARRFKELAFLNSGVSIILRDFRNNKE-------DIFYCNGGIKAFIKYLNVKK 233 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALT 339 + I S IF K ++ A+ W + I S+ N I +GGTH SGL+ A+T Sbjct: 234 TPIHSNIFYYSGYK---GEIGIKVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAIT 290 Query: 340 RGIKKYAE---LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 R I Y + K I + DD+ V +LS++I P+F+ QTK KL+S + + V Sbjct: 291 RTIHFYIDKEGYNNKKDKIVTMGDDVREGLVAVLSIYIPNPKFSSQTKDKLISSEVKTAV 350 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK-LRLPGKLAD 455 E+ + + + ++NP ++ ++ VI + R RK R+++R+ + LPGKLAD Sbjct: 351 ESLIYEKLIEFFLENPSDSKSIINKVISAARARESARKIRDLSRRKGVSDFSVLPGKLAD 410 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C + +EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++ ++M Sbjct: 411 CQEKNPVYSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSPEVMS 470 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ ALGC LRY +I+MTDADVDGAHI +LLLTFFY+ M ++I++ H+F+ Sbjct: 471 LITALGCGIGQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRYMPEIIDKGHIFI 530 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKI 600 PPL+++ +G +S Y DEE + Sbjct: 531 AQPPLYKVQKGNQSQYIKDEEEMYQY 556 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 15/130 (11%) Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEIS 615 L F ++M +L+ H ++ ++ + + +E + + + I Sbjct: 691 LVTFGKKMNELLLSNHSYIQ----YKNDRKK-------INSFDQAIEWLMQESRKGLIIQ 739 Query: 616 RFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 R+KGLGEM QL ET M+ R +L+V + L + + + LMG + R FI+ Sbjct: 740 RYKGLGEMNPDQLWETTMNPKNRCMLKVTVRDAL----EADNLFSTLMGDVVEPRRIFIE 795 Query: 676 ERASFIDDVG 685 + A +V Sbjct: 796 DNALKAKNVD 805 >gi|113866034|ref|YP_724523.1| DNA gyrase subunit B [Ralstonia eutropha H16] gi|113524810|emb|CAJ91155.1| DNA gyrase subunit B [Ralstonia eutropha H16] Length = 841 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 231/594 (38%), Positives = 343/594 (57%), Gaps = 36/594 (6%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 N + Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 5 QNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 I+V++ + +++VDNGRGIP V+ K +S EI +T LHAGGKF+ ++Y++S Sbjct: 65 TEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195 GGLHGVG+S VNALS L +TV R + +F++G + K Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGDVQNRIVETVTGPDGQPVEVSPMK 184 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 +KRGT + F D +IF + F L K + ++L+ V + Sbjct: 185 IIGATDKRGTEVHFLADEEIFTNV-EFHYEILSKRIRELSFLNNGVHIKLVDQR------ 237 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 ++E+F F GG+K +++ ++S++ IF TEK G VE A+ W + + Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDGI---AVEVAMQWNDGYNEQ 293 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY E + K + DD+ +LSV Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETTGDDMREGLSCVLSV 353 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + + +L++ P +A + +++ + R Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVGKALNDFLLETPGDAKIICGKIVDAARAREAA 413 Query: 433 RKQREVNRKTAI-RKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + +ELF+VEGDSAGGSAKQ R+R QA+LP Sbjct: 414 RKAREMTRRKGLMDGMGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRKFQAILP 473 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 L+GKILNV A +K+ ++Q+++ L+ ALG + LRY ++IIMTDADVDG+H Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 533 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 I +LLLTFFY++M D+IE+ ++++ PPL++I G + Y D+ L + Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKL 587 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Query: 593 DEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSL 652 ++ + + R+KGLGEM QL ET +D +R LL+V+I + Sbjct: 752 TVNDFHGAMQWLLAEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAI--- 808 Query: 653 KDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 809 -AADQIFTTLMGDEVEPRRNFIESNALVARNID 840 >gi|188474273|gb|ACD49736.1| DNA gyrase subunit B [Vibrio mimicus] Length = 778 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 220/559 (39%), Positives = 335/559 (59%), Gaps = 17/559 (3%) Query: 56 EPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGR 114 + VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY I V++ + ++V D+GR Sbjct: 1 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIHEDNSVSVSDDGR 60 Query: 115 GIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVA 174 GIP E HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS+++ +T+ Sbjct: 61 GIPTEMHPE-EKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIY 119 Query: 175 RQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSK 234 R I +Q + G+P +PL + + GT + F P + F + F L K + Sbjct: 120 RGGKIHTQTYHHGVPQAPLSVVGET-ERTGTTVRFWPSAQTFTNI-EFHYDILAKRLREL 177 Query: 235 AYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK 294 ++L+ V + ++E +K + F + GG++ ++ N++ I ++F E+ Sbjct: 178 SFLNSGVSIRLTDEREEDKK------DHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQER 231 Query: 295 KGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--N 351 + +VE A+ W + I + N I +GGTH +G R ALTR + Y + Sbjct: 232 ED--GISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSK 289 Query: 352 KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQN 411 K + DD ++SV + +P+F+ QTK KLVS + + VE+A+ + +L +N Sbjct: 290 KAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAEN 349 Query: 412 PIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVE 470 P EA + +I+ + R RK R RK A+ LPGKLADC + +EL+IVE Sbjct: 350 PSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVE 409 Query: 471 GDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYR 529 GDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ L+ ALGC R +Y Sbjct: 410 GDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYN 469 Query: 530 EEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSV 589 + LRY +IIMTDADVDG+HI +LLLTFFY++M +LIE+ ++++ PPL+++ +G + Sbjct: 470 PDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQ 529 Query: 590 YAHDEEHKQKILEEFKKHG 608 Y DE+ + G Sbjct: 530 YIKDEDAMNQYQVALAMDG 548 Score = 126 bits (317), Expect = 9e-27, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G + LE K + + I R+KGLGEM QL ET MD + R ++ Sbjct: 692 IKRGERVQPISS---FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMM 748 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQ 675 +V I + + LMG + + R F++ Sbjct: 749 QVTIEDAVG----ADELFTTLMGDQVEPRRNFME 778 >gi|148555711|ref|YP_001263293.1| DNA gyrase subunit B [Sphingomonas wittichii RW1] gi|148500901|gb|ABQ69155.1| DNA gyrase subunit B [Sphingomonas wittichii RW1] Length = 826 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 226/603 (37%), Positives = 345/603 (57%), Gaps = 34/603 (5%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVI 90 + N +++Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE + Sbjct: 2 TNETENSPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN----S 146 AG+ + I ++L+ +G ++V DNGRGIP H + S E+I+T LHAGGKFDN + Sbjct: 62 AGHCDRIVITLNPDGSVSVEDNGRGIPTGIHAE-EGVSAAEVIMTQLHAGGKFDNTNDAN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG+SVVNALSD L +T+ R +F RG ++PL+ K+GT+ Sbjct: 121 AYKVSGGLHGVGVSVVNALSDVLDLTIWRDGEEHYMRFQRGDAVAPLKVVGPANGKKGTK 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 +TF P P+ F FD +L + A+L+ V+ + ++ K ++ Sbjct: 181 VTFLPSPETFK-ITEFDFDKLEHRYRELAFLNSGVRLFLADERHAERKEIE-----LFYE 234 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSYCNTILTD 325 GG+ +++ + + + ++ +EW ++ ++ + N I Sbjct: 235 GGIAAFVKYLDRTKVALMPDPVAIMGQRDDVGIDVALEWNDSY---YEQVLCFTNNIPQR 291 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH + R ALTR + YAE + K +S+ DD+ I+SV + +P+F+ QT Sbjct: 292 DGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQT 351 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLVS + ++ +E+ + D +L +NP A +++ VI+ + R RK RE+ R+ Sbjct: 352 KDKLVSSEVRQPLESLMADKLAEWLEENPAHARSIIQKVIDAAAAREAARKARELTRRKG 411 Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKILNV A Sbjct: 412 VMDIASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVERA 471 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ +++++ L+QA+G E LRY K++IMTDADVDGAHI +LLLTFFY+ Sbjct: 472 RFDRMLSSKEVGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 531 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLG 621 M +IE HL++ PPL+++ +G VY D+ + L GLG Sbjct: 532 HMKPIIENGHLYIAQPPLYKVAKGRSEVYLKDDAALDEYLVTG--------------GLG 577 Query: 622 EML 624 M+ Sbjct: 578 AMM 580 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L+ G+ + I R+KGLGEM A QL ET +D R +L+VE+ + Sbjct: 743 NLLDAVLAAGRKGMSIQRYKGLGEMNAEQLWETTLDPANRAMLKVEV----AQADVADEI 798 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 +LMG + R +FIQE A + ++ Sbjct: 799 FTRLMGDVVEPRREFIQENALSVANLD 825 >gi|325980884|ref|YP_004293286.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212] gi|325530403|gb|ADZ25124.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212] Length = 806 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 223/583 (38%), Positives = 347/583 (59%), Gaps = 20/583 (3%) Query: 29 IPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMD 87 +P ++ ++ YD+ SI+IL+GL+ VR RPGMYIG T D LHH+ EV+DNA+D Sbjct: 2 SDQNPHVPKENPAN-YDSESIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60 Query: 88 EVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFDNS 146 E +AG+ + I V++ + ++V+DNGRGIP +S EI++T LHAGGKFD++ Sbjct: 61 EALAGHCDEITVTIHPDNSVSVLDNGRGIPTGIKQDDEMKRSAAEIVMTELHAGGKFDDN 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 +Y++SGGLHGVG+SVVNALS+ L +T+ R + +F G+P+ PLE + GT Sbjct: 121 SYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-GTE 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 + F +IFG+ + K + ++L+ VK + + E+F F Sbjct: 180 VHFLASKEIFGNI-EYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD-------EKFAFT 231 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG++ +++ +++++ IF K VE ++ W + ++ + N I Sbjct: 232 GGIRNFVEYINRSKTVLHPSIFYTTGVKDNI---AVEVSMQWNDSYTEQVLCFTNNIPQK 288 Query: 326 EGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQT 383 +GGTH +GLR A+TR + Y E + K + DD+ +LSV + EP+F+ QT Sbjct: 289 DGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQT 348 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA 443 K KLVS + + VE + YL++NP++A + +I+ + R RK RE+ R+ Sbjct: 349 KEKLVSSEVRPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRRKG 408 Query: 444 -IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + + LPGKLADC + EL++VEGDSAGGSAKQ R+R QA++PL+GKILNV A Sbjct: 409 VLDSMGLPGKLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKA 468 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +K+ ++Q+I+ L+ ALG + +Y + LRY ++IIMTDADVDG+HI +LLLTFFY+ Sbjct: 469 RFDKLISSQEIISLITALGTGFGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYR 528 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 +M +LIE+ H+++ PPL++I G K Y D+ ++ L Sbjct: 529 QMPELIERGHIYIAQPPLYKIKHGKKERYVKDDHELKQHLLSL 571 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Query: 595 EHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKD 654 + LE + K + + R+KGLGEM SQL ET MD R LLR +I + Sbjct: 719 NEFKHALEWLLEEAKKGLNVQRYKGLGEMNPSQLWETTMDPENRRLLRAQIEDSI----L 774 Query: 655 TQDSINKLMGTKADERFKFIQERASFIDDVG 685 T + LMG + R FI++ A ++ Sbjct: 775 TDEIFTTLMGDMVEPRRAFIEKNALRATNID 805 >gi|187922038|ref|YP_001893680.1| DNA gyrase subunit B [Burkholderia phytofirmans PsJN] gi|187713232|gb|ACD14456.1| DNA gyrase, B subunit [Burkholderia phytofirmans PsJN] Length = 823 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 2 TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ N I+V + + +++ DNGRG+P P +S EI++T LHAGGKFD ++Y Sbjct: 62 GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196 ++SGGLHGVG+S VNALS L +T+ R +F RG+P +SP++ Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 + N RGT + F D IFG+ + L K + ++L+ V+ + + Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIKLTDQR------- 232 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315 ++E+F F GG+K +++ +N+S++ IF EK G VE A+ W + + Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 + N I +GGTH +GLR A+TR + KY + K + DD+ +LSV Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F+ QTK KLVS + + VE+ + + +L++ P +A + +++ + R R Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPL Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551 RGK+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +LLLTFFY++M ++IE+ ++++ PPLF+I G Y DE + + G Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + I R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|149196297|ref|ZP_01873352.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155] gi|149140558|gb|EDM28956.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155] Length = 838 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 215/578 (37%), Positives = 334/578 (57%), Gaps = 13/578 (2%) Query: 34 AFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGY 93 + ++ + Y A SI +++GLE VR RP MYIG T+E+ LHHL EV+DN++DE +AG+ Sbjct: 2 SEEQENQAGEYGADSISVMKGLEAVRKRPSMYIGDTNERGLHHLVYEVVDNSIDEALAGH 61 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 N I V L + +TVVD+GRGIPV H + +E++LT LHAGGKFD +Y++SGG Sbjct: 62 CNNITVKLHIDNSVTVVDDGRGIPVNIHEE-EGIPAVELVLTKLHAGGKFDKDSYKVSGG 120 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS+ + V V R T+ +F RG+ + L+ N GT + F+PD Sbjct: 121 LHGVGVSCVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHT-NITGTEVIFKPDF 179 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF + + L K + A+L+ + + ++ +E FYFPGG+ ++ Sbjct: 180 EIFTETLIYKWDILAKRLRELAFLNPGITINFIDERAED----GERRETFYFPGGIGEFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHES 332 + + ++++ ++ T TEK G T + + + + I SYCN I T EGGTH + Sbjct: 236 KHLNDGKTVV-TDTVTFSTEKDGV---TADVSFQYHDGFQENIYSYCNNIHTIEGGTHLA 291 Query: 333 GLRVALTRGIKKYAELTQN-KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLD 391 G + ALT I Y + K ++ D+ I+SV + EP+F GQTKTKL + + Sbjct: 292 GFQTALTASINSYMKNDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNE 351 Query: 392 AQRTVENALRDPFDHYLVQNPIEATKLL-EWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 + V + F+ +L +NP A ++ + ++ R ++ + + + Sbjct: 352 VRSIVRAIVSTSFNEFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADA 411 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL+ CS E+FIVEGDSAGGSAKQ RN QA+LPLRGK++NV A +K+ N Sbjct: 412 GKLSGCSSKNPDECEIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFAN 471 Query: 511 QQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I L+ A+GC +++ E +RY+K++IMTDADVDG+HI +LLLTFF+++M LIE Sbjct: 472 TEIGSLISAIGCGVGNEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAG 531 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++++ PPL+++ + + Y ++ L E G Sbjct: 532 YIYVAQPPLYKVVRRKREEYIKNDAMLNNFLLELGVDG 569 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 578 PLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANK 637 P+F +T G ++ E K G +++ R+KGLGEM A QL ET MD + Sbjct: 737 PIFNLTDGNNDTPIFT---LIQLFEAIKDEGSQGLKLQRYKGLGEMNADQLWETTMDPTR 793 Query: 638 RTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 R LL+V + + + + + LMG + R FI++ ++ + ++ Sbjct: 794 RDLLQVTMEDAV----EAERMFSLLMGDVVEPRRHFIEKYSTTLKELD 837 >gi|157964719|ref|YP_001499543.1| DNA gyrase subunit B [Rickettsia massiliae MTU5] gi|157844495|gb|ABV84996.1| DNA gyrase subunit B [Rickettsia massiliae MTU5] Length = 808 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 233/564 (41%), Positives = 332/564 (58%), Gaps = 12/564 (2%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99 +Y A SI++L+GLE VR RPGMYIG + LHH+ EV+DNA+DE +AGY NL+ V Sbjct: 13 ESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLAGYCNLVRV 72 Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159 +L+ NG +TV DNGRGIPVE H + S E+I+T LHAGGKFD +TY+++GGLHGVG+ Sbjct: 73 TLNKNGSVTVSDNGRGIPVEIHEE-EGISAAEVIMTQLHAGGKFDQNTYKVAGGLHGVGV 131 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219 SVVNALS+ L + + R N + +F+ GI +PL ++ +K+GT +TF P + F + Sbjct: 132 SVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFPSVETFTNI 191 Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 FD + + A+L+ VK ++ K FY+ GG++ Y++ Sbjct: 192 -EFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKKVE-----FYYTGGIEAYVKYIDRA 245 Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVAL 338 + I + + E A+ W + I + N I +GGTH S + A+ Sbjct: 246 KHAIHP--CIVVNTENVESGMSFELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 303 Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 TR I Y + T K DD +LSV + +P+F+ QTK KLVS + + VEN Sbjct: 304 TRVITSYLDTTNKKAKNDFSGDDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEN 363 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCS 457 A+ + ++P EA ++ ++E + R RK RE RK+A+ LPGKLADC Sbjct: 364 AVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLADCH 423 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +ELFIVEGDSAGG+AKQ R+ QA+LPLRGKILNV A +K+ + QI L+ Sbjct: 424 AKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLI 483 Query: 518 QALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISP 577 ALG ++ E LRY KVIIMTDADVDG+HI +LLLTFFY+ M +LI + +L++ P Sbjct: 484 TALGISVEREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQP 543 Query: 578 PLFRITQGTKSVYAHDEEHKQKIL 601 PL+++ +G +Y +E+ Q L Sbjct: 544 PLYKVKKGAAELYLKNEQALQDYL 567 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 21/136 (15%) Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGK 609 I+ L LT F L ++ ++ L + GK Sbjct: 693 QISKLALTIFDIFSKQL--------------KLIVKSQEFDILTPSQL---LNTIIECGK 735 Query: 610 GKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADE 669 I I RFKGLGEM + QL ET +D KRTLL+V + + + + + LMG + Sbjct: 736 RGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRV----AEIDEAEGIFSTLMGDVVEP 791 Query: 670 RFKFIQERASFIDDVG 685 R FIQ A + ++ Sbjct: 792 RRLFIQANALNVVNLD 807 >gi|30248034|ref|NP_840104.1| DNA gyrase subunit B [Nitrosomonas europaea ATCC 19718] gi|30179919|emb|CAD83914.1| DNA gyrase, subunit B:DNA topoisomerase II gyrB [Nitrosomonas europaea ATCC 19718] Length = 809 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 221/582 (37%), Positives = 345/582 (59%), Gaps = 19/582 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNA 85 A ++ +Y++ SI+IL+GL+ VR RPGMYIG T D LHH+ EV+DNA Sbjct: 2 NTNQPESAKKTDNSHRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-NKSTLEIILTTLHAGGKFD 144 +DE +AGY + I V + + +++ DNGRGIP + +S EI++T LHAGGKFD Sbjct: 62 IDEALAGYCDDISVIIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFD 121 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 +++Y++SGGLHGVG+SVVNALS+ L +T+ R ++ +F G+ ++PL+ + G Sbjct: 122 DNSYKVSGGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTEKH-G 180 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F +FGD + K + ++L+ +K + ++ E E F Sbjct: 181 TEVHFLASQSVFGDIT-YHYDIFAKRLRELSFLNHGIKIRLADQRDDRE-------EVFA 232 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 F GG++ +++ +++++ IF K K TVE A+ W + ++ + N I Sbjct: 233 FTGGIRNFVEYINRSKTVLHPSIFYAKGLKDNI---TVEIAMQWNDSYAEQVLCFTNNIP 289 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAG 381 +GGTH +GLR A+TR + Y E + K + DD+ +LSV + EP+F+ Sbjct: 290 QKDGGTHLTGLRAAMTRTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSS 349 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRK 441 QTK KLVS + + VE + +L++NP EA + +IE + R RK RE+ R+ Sbjct: 350 QTKEKLVSSEVRPAVEEIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELTRR 409 Query: 442 TA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 + + LPGKLADC + EL++VEGDSAGGSAKQ R+R QA++PL+GKILNV Sbjct: 410 KGVLDSMGLPGKLADCQEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVE 469 Query: 501 SAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFF 559 + +K+ ++Q+I+ L+ ALG + +Y + LRY ++IIMTDADVDG+HI +LLLTFF Sbjct: 470 KSRFDKLISSQEIVSLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFF 529 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 Y++M +LIE+ H+++ PPL++I G + Y D+ + + Sbjct: 530 YRQMPELIERGHIYIAQPPLYKIKHGKQERYLKDDYELKHYI 571 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 581 RITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTL 640 ++ +G + + ++ LE + K I I R+KGLGEM QL ET MD R L Sbjct: 711 KVKRGEQEI---SVREFKEALEWLLEETKKGITIQRYKGLGEMNPEQLWETTMDPGNRRL 767 Query: 641 LRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LR +I + T + LMG + R FI+ A ++ Sbjct: 768 LRAQIEDSI----LTDEIFTTLMGDVVEPRRAFIESNALRARNID 808 >gi|91781387|ref|YP_556593.1| DNA gyrase subunit B [Burkholderia xenovorans LB400] gi|91685341|gb|ABE28541.1| DNA gyrase subunit B [Burkholderia xenovorans LB400] Length = 823 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 232/597 (38%), Positives = 348/597 (58%), Gaps = 33/597 (5%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 2 TETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKFPNKSTLEIILTTLHAGGKFDNSTY 148 G+ N I+V + + +++ DNGRG+P P +S EI++T LHAGGKFD ++Y Sbjct: 62 GHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHDPKRSAAEIVMTELHAGGKFDQNSY 121 Query: 149 EISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKK 196 ++SGGLHGVG+S VNALS L +T+ R +F RG+P +SP++ Sbjct: 122 KVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQVT 181 Query: 197 EKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYG 256 + N RGT + F D IFG+ + L K + ++L+ V+ + + Sbjct: 182 GETEN-RGTEVHFLADETIFGNI-EYHYDILAKRIRELSFLNNGVRIKLTDQR------- 232 Query: 257 IPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEI 315 ++E+F F GG+K +++ +N+S++ IF EK G VE A+ W + + Sbjct: 233 TGKEEDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGV---GVEVAMQWNDSYNENV 289 Query: 316 TSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVF 373 + N I +GGTH +GLR A+TR + KY + K + DD+ +LSV Sbjct: 290 LCFTNNIPQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVK 349 Query: 374 IREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRR 433 + EP+F+ QTK KLVS + + VE+ + + +L++ P +A + +++ + R R Sbjct: 350 VPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAAR 409 Query: 434 KQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPL 492 K RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+LPL Sbjct: 410 KAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPL 469 Query: 493 RGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHI 551 RGK+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGAHI Sbjct: 470 RGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHI 529 Query: 552 ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 +LLLTFFY++M ++IE+ ++++ PPLF+I G Y DE + + G Sbjct: 530 RTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQG 586 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + I R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|215433471|gb|ACJ66701.1| GyrB [Myxococcus fulvus HW-1] Length = 815 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 227/582 (39%), Positives = 331/582 (56%), Gaps = 17/582 (2%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 E + A Y SI LEG E VR RPGMYIG T LH L EV+DNA+ Sbjct: 1 MEKTPATGSAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTVAYGLHKLVYEVVDNAV 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +AG+ IEV + +G L+V DNGRGIPV HPKFP K TLE++LT LHAG KF N Sbjct: 61 DESLAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNG 120 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG++ VN LS+ V V R ++ Q +++GIP SP + +KRGT Sbjct: 121 AYKVSGGLHGVGVTCVNFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTH 179 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I F+PD + F+ L + + A+L+ + ++ E F F Sbjct: 180 IAFKPDATVMEL-VEFNFETLSQRLRELAFLNAGLHITIRDERTNKEHD-------FKFD 231 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTD 325 GG+ ++++ +++ + + TE++G T++ A+ W + I ++ N I T Sbjct: 232 GGISSFVEYLNKSKQTLHDKPIAFSTEREGV---TLDIAMQWNDGYDERIYTFANNINTH 288 Query: 326 EGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQT 383 EGG+H SG + ALTR + YAE + + +D ++SV + P+F GQT Sbjct: 289 EGGSHLSGFKAALTRTLNSYAEKGNLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQT 348 Query: 384 KTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNRKT 442 KTKL + + + VE + D +L + P+ A K++ + R+ + V RK Sbjct: 349 KTKLGNSEVKGLVEQMVNDQLGSFLEETPMVAKKVVAKIGDACRARLAARKARETVRRKG 408 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 + LPGKLADC + +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV A Sbjct: 409 VLDGGGLPGKLADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKA 468 Query: 503 GSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 EK+ + +I+ L+ ALG Y E RY ++I+MTDADVDG+HI +LLLTFF++ Sbjct: 469 RFEKMLTSAEIVTLITALGTGIGAEDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFR 528 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 +M +L+++ +L++ PPL+++T+ K Y DE + L + Sbjct: 529 QMPELLQKGYLYIAQPPLYKVTRNKKDQYVKDEHALNEYLLK 570 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PP +++ + + +L +K + + + R+KGLGEM QL +T M+ Sbjct: 713 KPP-YKVRVEAGEITVFSVQE---VLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNP 768 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V + + S + + LMG + R +FI+ A + ++ Sbjct: 769 ATRTLLQVRVEDAVES----DEIFSLLMGEAVEPRREFIERNALDVQNLD 814 >gi|88705397|ref|ZP_01103108.1| DNA gyrase subunit B [Congregibacter litoralis KT71] gi|88700487|gb|EAQ97595.1| DNA gyrase subunit B [Congregibacter litoralis KT71] Length = 804 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 227/570 (39%), Positives = 347/570 (60%), Gaps = 20/570 (3%) Query: 38 QSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANL 96 AS+NYD S I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ Sbjct: 2 SDASENYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCAK 61 Query: 97 IEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 I +++ + ++V D+GRGIP E H S E+ILT LHAGGKFD++TY++SGGLHG Sbjct: 62 ILITIHPDESVSVQDDGRGIPTEMHD--EGVSAAEVILTVLHAGGKFDDNTYKVSGGLHG 119 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+SVVNALS+EL +T+ R F Q+++ G+P L+ + N+ GT I F+P + F Sbjct: 120 VGVSVVNALSEELWLTIWRGGRRFEQRYAHGVPQGALQDVGEA-NQTGTLIRFKPSAETF 178 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 + F+ L K + A+L+ ++ + ++ E + +++ GGL ++ Sbjct: 179 TNI-EFEFDVLAKRLRELAFLNSGIEILLNDERSGKE-------DRYFYEGGLNAFVDYL 230 Query: 277 LENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLR 335 N++ + + +G +VE A+ W + I Y N I +GGTH +G R Sbjct: 231 NRNKTPMHKAFHF---QSEGDDGMSVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFR 287 Query: 336 VALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQ 393 ALTR + Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 288 SALTRTLNGYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVK 347 Query: 394 RTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGK 452 VE A+ + F YL+++P EA ++ +++ + R RK R RK A+ LPGK Sbjct: 348 SAVEQAMNNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGK 407 Query: 453 LADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQ 512 LADC + A +E+++VEGDSAGGSAKQ RNR QA+LPL+GKILNV A +K+ ++ + Sbjct: 408 LADCQEKDASLSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLSSVE 467 Query: 513 IMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571 + LV ALGC + ++ + LRY +IIMTDADVDG+HI +LLLTFF+++M +LI++ H Sbjct: 468 VGTLVTALGCGIGKEEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGH 527 Query: 572 LFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +F+ PPL+++ +G + Y D+ + L Sbjct: 528 VFIAQPPLYKVGKGKQHQYLKDDAALAEFL 557 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Query: 601 LEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660 LE + I R+KGLGEM QL ET MD R +L+V ++ + + Sbjct: 723 LEWLMAEARRGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTVDDAMR----ADEIFT 778 Query: 661 KLMGTKADERFKFIQERASFIDDVG 685 LMG + + R +FI+E A ++ ++ Sbjct: 779 TLMGDQVEPRREFIEENALYVSNLD 803 >gi|269303150|gb|ACZ33250.1| DNA gyrase, B subunit [Chlamydophila pneumoniae LPCoLN] Length = 805 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 230/580 (39%), Positives = 338/580 (58%), Gaps = 18/580 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 NYDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AGY + I+ Sbjct: 3 PKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRID 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 V + +G + +VDNGRGIP+E H + S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS++L TV + + +FSRGIP++PLE +++GT I F PDP Sbjct: 123 LHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLE-YVSASDRQGTEIVFYPDP 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 KIF FD + L+K + A+L+ + + D++++ F++ GG+++++ Sbjct: 182 KIFST-CTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVT-----FFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + SE + G E A+ W E + SY N I T +GGTH Sbjct: 236 SYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR I Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 296 TGFATALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + + +NP A +++ V ++ R +K RE+ RK+A+ R Sbjct: 356 SDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC + LRY ++IIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 E + +++ PPL+++++ Y E+ L + Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTN 575 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%) Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + ++++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+RV + Sbjct: 713 YSCYT---LEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKDA 769 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 + + LMG + R +FI+ A I +++ Sbjct: 770 V----EADHIFTMLMGEEVPPRREFIESHALSIRMNNLD 804 >gi|62185121|ref|YP_219906.1| DNA gyrase subunit B [Chlamydophila abortus S26/3] gi|62148188|emb|CAH63945.1| DNA gyrase subunit B [Chlamydophila abortus S26/3] Length = 806 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 229/578 (39%), Positives = 335/578 (57%), Gaps = 18/578 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AGY + I Sbjct: 3 AKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIH 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153 V + +G +T+ DNGRGIP++ H K K S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNAL+++L TV + + +FSRG+P++ L+ + GT ITF PD Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTSLQCLGATNKQ-GTEITFYPDN 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 KIF FD + L+K + A+L+ V + D++++ +K F++ GG+++++ Sbjct: 182 KIFSSCV-FDRSILIKRLRELAFLNRGVTIIFEDDRDVS-----FDKVVFFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + E + G E A+ W E I SY N I T +GGTH Sbjct: 236 SYLNQNKESLFPEPIYISGSRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR + Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + +NP A +++ V ++ R +K RE+ RK+A+ R Sbjct: 356 SDVGSVSQQITGEALTIFFDENPQIAKMIVDKVFIAAQAREAAKKARELTLRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC S LRY ++IIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 E + +++ PPL+++++ Y E+ L Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + ++++E K G+ IEI R+KGLGEM A QL + M+ +RTL+RV + + Sbjct: 714 YTCYTLKEVIEHLKALGRKGIEIQRYKGLGEMNADQLWDITMNPEQRTLVRVSLKDAV-- 771 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 + LMG + R +FI+ A + ++ Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805 >gi|319780074|ref|YP_004139550.1| DNA gyrase, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165962|gb|ADV09500.1| DNA gyrase, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 823 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 230/580 (39%), Positives = 339/580 (58%), Gaps = 24/580 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 N A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 7 NNNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +L+ V+L+ +G +TV+DNGRGIP + H S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 67 DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205 HGVG+SVVNALS L + + R IF F+ G ++ + G+ Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGTYEQDKQPGTYEGRSGS 185 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 +ITF P + F FD L + A+L+ V+ + + ++ Sbjct: 186 QITFFPSAETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDARHADVVRHE-----LHY 239 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + + + E+ G TVE A+ W + E ++ N I Sbjct: 240 DGGLEEFVKYLDRVKKPLIDKPIAIRAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR I Y E + K +S+I DD +LSV + +P+F+ Q Sbjct: 297 RDGGTHLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KLVS + + VE + + +L ++P E +++ VI+ + R RK R++ RK+ Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPSEGKVVVDKVIQAAAAREAARKARDITRKS 416 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 ++ LPGKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ + I L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M +LIE+ HL++ PPL+++T+G S Y DE ++ L Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKDESAFEEFL 576 Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM A QL ET +D N R+LL+V++N D Sbjct: 740 AMLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R +FIQ+ A + ++ Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822 >gi|310817572|ref|YP_003949930.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1] gi|309390644|gb|ADO68103.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1] Length = 817 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 229/610 (37%), Positives = 341/610 (55%), Gaps = 24/610 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 + S Y A SI LEG E VR RPGMYIG T LH L EV+DNA+ Sbjct: 1 MDKTPSTGATPAPLPVEYGAESITKLEGREAVRKRPGMYIGDTMTYGLHKLVYEVVDNAV 60 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENH--PKFPNKSTLEIILTTLHAGGKFD 144 DE +AGY I V + +G L+V DNGRGIPV H PKF +K T++++LT LHAG KF Sbjct: 61 DEALAGYCTEISVDIHVDGSLSVQDNGRGIPVGPHPDPKFHDKDTVDVVLTELHAGSKFG 120 Query: 145 NSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRG 204 N Y++SGGLHGVG++ VN LS+ L V + R ++ Q +SRGIP +++ +KRG Sbjct: 121 NGAYKVSGGLHGVGVTCVNFLSEWLKVRIQRNGKVYEQSYSRGIPDGKVKEVG-TTDKRG 179 Query: 205 TRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFY 264 T + F+PD ++ FD L + + A+L+ + ++ E F Sbjct: 180 TLVWFKPDTQVMEA-VDFDFETLSQRLRELAFLNAGLHISIRDERTNKEHE-------FK 231 Query: 265 FPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTIL 323 F GG+ ++++ +++ + + +TEK+G ++E A+ W + I ++ N I Sbjct: 232 FDGGIGSFVEYLNKSKQALHDKPIFVRTEKEGV---SLELAMQWNDGYDERIYTFANNIN 288 Query: 324 TDEGGTHESGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAG 381 T EGG+H SG + ALTR + YAE + + + +D ++SV + P+F G Sbjct: 289 THEGGSHLSGFKAALTRTLNSYAEKSGLWKDLKETPTGEDAREGLAAVISVKLSNPQFEG 348 Query: 382 QTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV-IERSEERLRRRKQREVNR 440 QTKTKL + + + VE + D YL +NP K++ + R+ + V R Sbjct: 349 QTKTKLGNSEIKGLVEQMVNDQLATYLEENPSNGKKVVAKIGDACRARIAARKARETVRR 408 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K + LPGKLADC +EL+IVEGDSAGGSAKQ R+R NQA+LPLRGKILNV Sbjct: 409 KGILDGGGLPGKLADCQSRDPKESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVE 468 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQYREE-DLRYEKVIIMTDADVDGAHIASLLLTFF 559 A EK+ + +I+ L+ ALG ++ + RY ++I+MTDADVDG+HI +LLLTFF Sbjct: 469 KARFEKMLTSAEIITLITALGTGIGAEDYDPAKARYNRIILMTDADVDGSHIRTLLLTFF 528 Query: 560 YQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKG 619 +++M +L++ +L++ PPL+++T+ K +Y DE + L + + Sbjct: 529 FRQMRELLDLGYLYIAQPPLYKVTRNKKDLYVKDERALNEYLLRIAAEHSRVVTPN---- 584 Query: 620 LGEMLASQLK 629 GE+ S+LK Sbjct: 585 -GELGGSELK 593 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 8/110 (7%) Query: 576 SPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDA 635 PP + + V A + +L +K + + + R+KGLGEM QL +T M+ Sbjct: 715 RPP-YTVKVDGGEVTAFSVQE---VLAVVRKDAQKGLGLQRYKGLGEMNPEQLWDTTMNP 770 Query: 636 NKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 RTLL+V++ + S + LMG + R +FI+ A + ++ Sbjct: 771 ATRTLLQVQLKDAVES----DGIFSLLMGEAVEPRREFIERNALDVQNLD 816 >gi|302381122|ref|YP_003816945.1| DNA gyrase subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302191750|gb|ADK99321.1| DNA gyrase, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 815 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 230/594 (38%), Positives = 344/594 (57%), Gaps = 22/594 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNA 85 + P A+ + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA Sbjct: 2 TDEPIHERTADNAEEAAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNA 61 Query: 86 MDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN 145 +DE +AG+A+L+EV L+ +G +TV DNGRGIPV+ H + S E+I+T LHAGGKFD Sbjct: 62 IDEALAGHADLVEVILNADGSVTVTDNGRGIPVDIHAE-EGVSAAEVIMTQLHAGGKFDQ 120 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV------ 199 ++Y++SGGLHGVG+SVVNALSD L + + R KF RG + L + Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMRENG 180 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 + GT++TF P F FD L + A+L+ V + P Sbjct: 181 KVLSGTQVTFYPSVTTFA-HIDFDLKTLEHRLRELAFLNSGVVIKLQDHR-----GVEPF 234 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 +E ++ GG++ +++ ++++ I ++ + ++ ++ A+ W + + + Sbjct: 235 EEILHYEGGVEAFVRHLDKSKTPILKDVIVIRGKRDNI---EIDLALWWNDSYHETMLCF 291 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH S R +LT+ + Y E + K ++ +D +LSV + + Sbjct: 292 TNNIPQRDGGTHLSAFRTSLTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPD 351 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE D + + ++P+EA ++ +IE + R RK R Sbjct: 352 PKFSSQTKDKLVSSEVRPAVEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKAR 411 Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 + RK+A+ LPGKLADC + +ELFIVEGDSAGGSAKQARNR NQAVLPLRGK Sbjct: 412 DLTRRKSALDISSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGK 471 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 ILNV A +++ +++ I L+ ALG + LRY K+I+M DADVDGAHI +L Sbjct: 472 ILNVERARFDRMLSSELIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTL 531 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTFFY++M +LIE+ H+F+ PPL+++++G +S Y D+ L E Sbjct: 532 LLTFFYRQMPELIERGHVFIAQPPLYKVSKGKQSRYLKDQSEMDSYLIEEGSSD 585 Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats. Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 4/83 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L GK + I R+KGLGEM QL ET +DAN RTLLRV+++ D D Sbjct: 733 DLLNAVLDQGKKGLAIQRYKGLGEMNPEQLWETTLDANARTLLRVQVDH----ADDADDL 788 Query: 659 INKLMGTKADERFKFIQERASFI 681 KLMG + R +FIQ+ A Sbjct: 789 FAKLMGDVVEPRREFIQDNALDA 811 >gi|209966328|ref|YP_002299243.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW] gi|209959794|gb|ACJ00431.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW] Length = 876 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 241/588 (40%), Positives = 348/588 (59%), Gaps = 26/588 (4%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 P SA++ Y ASSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 7 PDTPPASAAEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 66 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 GYA+ +EV+L+ +G +TV DNGRGIPV+ HP S E+I+T LHAGGKFD ++Y++S Sbjct: 67 GYADRVEVTLNADGSVTVRDNGRGIPVDIHP-GEGVSAAEVIMTQLHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR----------N 201 GGLHGVG+SVVNALS+ L + V R+ ++ F G ++PL Sbjct: 126 GGLHGVGVSVVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQP 185 Query: 202 KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKE 261 GT +TF P + F FD L + A+L+ V ++ + P+ Sbjct: 186 LTGTEVTFLPSKQTFTK-TEFDFQTLEHRFRELAFLNSGVLLVFTDAR-----GVEPKVT 239 Query: 262 EFYFPGGLKTYLQTKLENRSLISSEIFTGKTEK--KGTHRGTVEWAIAWCEEN-PEITSY 318 E ++ GGL+ ++Q +++ + + E+ TVE A+ W + + Sbjct: 240 ELFYEGGLEAFVQYLDRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCF 299 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +G R ALTR I KYAE + K +++ DD+ +LSV + + Sbjct: 300 TNNIPQRDGGTHLAGFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPD 359 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + D + ++P +A +++ V+E + R R+ R Sbjct: 360 PKFSSQTKDKLVSSEVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRAR 419 Query: 437 E-VNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E RK A+ LPGKLADC + +ELFIVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 420 ELTRRKGALDMASLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGK 479 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASL 554 ILNV A +K+ ++ +I L+ ALG R ++ + RY K+IIMTDADVDGAHI +L Sbjct: 480 ILNVERARFDKMLSSAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTL 539 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGT-KSVYAHDEEHKQKIL 601 LLTFFY++M LIE+ +L++ PPL+R+ +GT K Y D+ + L Sbjct: 540 LLTFFYRQMPALIERGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYL 587 Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659 +++ + G+ + I R+KGLGEM QL ET +D RTLL+V+++ + ++ Sbjct: 794 LMDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSH----ADEAEEVF 849 Query: 660 NKLMGTKADERFKFIQERASFIDDVG 685 + LMG + R FIQE A + ++ Sbjct: 850 STLMGDLVEPRRDFIQENALKVANLD 875 >gi|29840266|ref|NP_829372.1| DNA gyrase subunit B [Chlamydophila caviae GPIC] gi|29834614|gb|AAP05250.1| DNA gyrase, subunit B [Chlamydophila caviae GPIC] Length = 806 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 230/578 (39%), Positives = 338/578 (58%), Gaps = 18/578 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + +YDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AGY + I Sbjct: 3 AKEKSYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIY 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153 V + +G +T+ DNGRGIP++ H K K S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGITISDNGRGIPIQIHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNAL+++L TV + + +FSRG+P++ L+ V +K+GT ITF PD Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTALQPLG-VTDKQGTEITFYPDN 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 KIF FD + L+K + A+L+ + + D++++ +K F++ GG+++++ Sbjct: 182 KIFSSCV-FDRSILIKRLRELAFLNRGITIVFEDDRDVS-----FDKVVFFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + E + G E A+ W E I SY N I T +GGTH Sbjct: 236 SYLNQNKESLFPEPIYISGIRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR + Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + +NP A ++E V ++ R +K RE+ RK+A+ R Sbjct: 356 SDVGSVSQQITGEALTTFFEENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC S LRY ++IIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 E + +++ PPL+++++ Y E+ L Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573 Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + +++++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+RV + + Sbjct: 714 YTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 771 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 + LMG + R +FI+ A + ++ Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805 >gi|296282200|ref|ZP_06860198.1| DNA gyrase, B subunit [Citromicrobium bathyomarinum JL354] Length = 839 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 221/585 (37%), Positives = 340/585 (58%), Gaps = 27/585 (4%) Query: 35 FANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGY 93 N + Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV DNA+DE +AG+ Sbjct: 5 TKNGRNTGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 64 Query: 94 ANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF----DNSTYE 149 +L+ + L+ +G + V DNGRGIPV+ H K S E+I+T LHAGGKF D++ Y+ Sbjct: 65 CDLVLIELNPDGSVAVEDNGRGIPVDMH-KGEGVSAAEVIMTQLHAGGKFENTSDDNAYK 123 Query: 150 ISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRN-------- 201 +SGGLHGVG+SVVNALS+ L + + R +F G ++ LE + Sbjct: 124 VSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVASLEVRGDAPPVDSNGDEN 183 Query: 202 --KRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 K+GTR+TF+ F + FD +L + A+L+ V + + Sbjct: 184 GLKKGTRVTFKASEDTFKNVTEFDFEKLEHRYRELAFLNSGVHIKLRDRRGEDV-----Q 238 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGT-HRGTVEWAIAWCEENPEITSY 318 + + ++ GG+ ++ N+ + E + EK G +EW ++ + ++ Sbjct: 239 EHDLFYEGGIAAFVNYLDRNKDALIPEPISVSAEKDGIGIDVALEWNDSY---YENVLAF 295 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH + R ALTR + YA + K +S+ +D+ I+SV + + Sbjct: 296 TNNIPQRDGGTHLAAFRTALTRTLNNYAAASGLLKKEKVSLSGEDMREGLTAIVSVKLPD 355 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + +E+ + D +L +NP A +++ V++ + R R+ R Sbjct: 356 PKFSSQTKDKLVSSEVRSPLESLMGDKMTEWLEENPNHAKAIVQKVVDAAAAREAARRAR 415 Query: 437 EVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKI 496 E++RK A+ LPGKLADC + ELF+VEGDSAGGSAKQ R+R QA+LPL+GKI Sbjct: 416 EMSRKGAMSVASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKI 475 Query: 497 LNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLL 556 LNV A ++I +++++ L+QA+G R + E LRY K++IMTDADVDGAHI +LLL Sbjct: 476 LNVERARFDRIISSKEVGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLL 535 Query: 557 TFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 TFF++++ ++++ HLF+ PPL+++ +G VY DE + L Sbjct: 536 TFFHRQLPEIVKNGHLFIAQPPLYKVARGRSEVYLKDERALDRYL 580 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 ++ + G+ + + R+KGLGEM A QL ET +D + R LL+V+I T + Sbjct: 756 QLFDAVIAAGRKGLSVQRYKGLGEMNAEQLWETTLDPDNRALLQVKIED----ADVTDEI 811 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + R +FIQ+ A + ++ Sbjct: 812 FSRLMGDVVETRREFIQDNALNVANLD 838 >gi|254369714|ref|ZP_04985724.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FSC022] gi|157122673|gb|EDO66802.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FSC022] Length = 803 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 229/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP E+ + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKESKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|126668219|ref|ZP_01739180.1| DNA gyrase subunit B [Marinobacter sp. ELB17] gi|126627368|gb|EAZ98004.1| DNA gyrase subunit B [Marinobacter sp. ELB17] Length = 804 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 228/575 (39%), Positives = 339/575 (58%), Gaps = 19/575 (3%) Query: 40 ASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIE 98 + Y++SSI++L+GL+ VR RPGMYIG TD+ LHH+ E++DN++DE +AG+ I Sbjct: 2 SESAYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCTEIG 61 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVG 158 + + + ++V DNGRGIPV+ H + S E+I+T LHAGGKFD++TY++SGGLHGVG Sbjct: 62 IRIHPDESVSVHDNGRGIPVDLH-EGEGISAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218 +SVVNALS L +T+ R ++ Q ++ G+P +PL + + GT++ F P F + Sbjct: 121 VSVVNALSSVLTLTIRRSGKVYEQTYNHGVPAAPLHEVGST-DASGTKVHFIPSEATFTN 179 Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278 F L K + A+L+ V+ + ++ E E F + GGL+ +++ Sbjct: 180 I-KFHYEILAKRVRELAFLNSGVRIRLTDERSGKE-------ELFEYEGGLRAFVEHLNT 231 Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVA 337 N++ I+ + + + G VE A+ W + I + N I +GGTH G R A Sbjct: 232 NKTPINRVFYFTQQREDGI---EVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLVGFRTA 288 Query: 338 LTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRT 395 LTR + Y E K +S DD I+SV + +P+F+ QTK KLVS + + Sbjct: 289 LTRSLNSYIEHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 348 Query: 396 VENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKLA 454 VE L F YL + P EA ++ +IE + R RK RK A+ LPGKLA Sbjct: 349 VEQELYQSFAAYLQEQPSEARLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLA 408 Query: 455 DCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIM 514 DC + +ELFIVEGDSAGGSAKQ R R NQA+LPL+GKILNV A +K+ ++ ++ Sbjct: 409 DCQEKDPALSELFIVEGDSAGGSAKQGRERRNQAILPLKGKILNVEKARFDKMLSSAEVG 468 Query: 515 DLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 +L+ ALGC + E LRY +IIMTDADVDG+HI +LLLTF +++M ++IE+ H+F Sbjct: 469 NLITALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREVIERGHVF 528 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 + PPL+++ +G + Y DE ++ L + G Sbjct: 529 IAMPPLYKVKRGKQEQYLKDENARESYLTQTALEG 563 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 597 KQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQ 656 + L K + + + R+KGLGEM QL ET MD R +++V I Sbjct: 719 FEGALAWLMKEAQRGLTLQRYKGLGEMNPEQLWETTMDPESRRMMKVTIADAF----AAD 774 Query: 657 DSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FIQ A + ++ Sbjct: 775 QMFTTLMGDDVEPRRNFIQTHALEVTNLD 803 >gi|254442695|ref|ZP_05056171.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235] gi|198257003|gb|EDY81311.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235] Length = 839 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 218/592 (36%), Positives = 330/592 (55%), Gaps = 20/592 (3%) Query: 27 GEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAM 86 N +Y+AS+I+ LEGLE VR RP MYIG T+E+ LHH EV+DN++ Sbjct: 3 STNESENEPVNYDGDSDYNASNIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNSI 62 Query: 87 DEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNS 146 DE +A Y I+VS+ +G ++ D+GRGIPV+ HPK+ N LE++LT LHAGGKF Sbjct: 63 DEALASYCKNIKVSIHLDGSCSIEDDGRGIPVDIHPKY-NIPALELVLTNLHAGGKFGKG 121 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTR 206 Y++SGGLHGVG VNA+S+ V R I +FS+G+ L + GT+ Sbjct: 122 AYQVSGGLHGVGAKCVNAVSEWFEAEVRRDGKIHQMQFSKGLTTKSLTIIGDTQK-TGTK 180 Query: 207 ITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFP 266 I+F+PDP+IF F L K + A+L+ + ++ E E F F Sbjct: 181 ISFKPDPEIFQTTLTFQYEILGKRLRELAFLNPGISISLIDERSNKE-------ESFLFV 233 Query: 267 GGLKTYLQTKLENRSLISSEIFTGKTEKKGTHR---GTVEWAIAWCEEN-PEITSYCNTI 322 G+ Y++ +++++ + + K V+ ++ + + +I +Y N+I Sbjct: 234 DGIAEYIRFLNRSKNVLHEDPISFSDSVKTNEDAPPIGVDVSLQYNDSYNDQIFAYANSI 293 Query: 323 LTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFA 380 EGGTH +G R ALTR + ++A + +I DD V ++SV + EP F Sbjct: 294 FNIEGGTHLTGFRTALTRVVNQFARANNLLKDKDPAITGDDAREGLVAVVSVKVPEPRFE 353 Query: 381 GQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNR 440 GQTKTKL + + V+ + + ++ +P A +L++ + + R RK RE R Sbjct: 354 GQTKTKLSNGEVDGIVQKIVGERLKYHFETDPKLAKRLIDKCLNAARAREAARKARETVR 413 Query: 441 KTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVA 500 K+A+ LPGKLADCS +E++IVEGDSAGGSAKQ R+R QA+LPLRGK++N Sbjct: 414 KSALSGGGLPGKLADCSSRKPEESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKLINSE 473 Query: 501 SAGSEKIRNNQQIMDLVQALGCRTRSQ-----YREEDLRYEKVIIMTDADVDGAHIASLL 555 A +K+ +N +I ++ A+G + E RY K+IIMTDADVDG+HI++LL Sbjct: 474 KARIDKVLSNNEIRTMITAIGTGIGDSEDGGGFNIEKARYHKIIIMTDADVDGSHISTLL 533 Query: 556 LTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 LTF Y+ M LIE+ ++++ PPL++I + + Y ++E +IL E Sbjct: 534 LTFLYRHMKGLIERGYVYMAQPPLYKIKRKRREQYIDNDEQLNRILLELGGD 585 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 IL+E +K G+ + I R+KGLGEM QL ET MD +KR LL+V IN + Sbjct: 756 SILDEIRKSGRKGLSIQRYKGLGEMNPKQLYETTMDVSKRRLLKVNIND----AAKADEL 811 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI++ A + + Sbjct: 812 FTILMGEEVAPRRLFIEDNALNVSYLD 838 >gi|169656699|ref|YP_001429063.2| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|164551767|gb|ABU62107.2| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 805 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 4 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 63 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 64 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 122 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 123 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 182 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 234 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 290 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 291 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 351 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 411 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 471 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 531 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 566 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 708 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 804 >gi|71281227|ref|YP_266786.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H] gi|71146967|gb|AAZ27440.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H] Length = 814 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 227/583 (38%), Positives = 347/583 (59%), Gaps = 24/583 (4%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + + Y +SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I Sbjct: 2 TVENEYSSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCTDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKF--DNSTYEISGGLH 155 V++ +G ++V D+GRGIP E HP+ S E+I+T LHAGGKF ++S Y++SGGLH Sbjct: 62 IVTIHLDGSVSVQDDGRGIPTEIHPE-EGISAAEVIMTVLHAGGKFGGEDSGYKVSGGLH 120 Query: 156 GVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKI 215 GVGISVVNALS++L + + R +F Q + G+ +PL + V +K GT + F P Sbjct: 121 GVGISVVNALSEKLKLNIRRDGKLFEQFYHIGVAEAPLAEVG-VSDKTGTEVRFWPSTNT 179 Query: 216 FGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQT 275 F D F L+K + ++L+ V ++E +++ F++ GG++ ++ Sbjct: 180 FTDVL-FHYEILVKRIRELSFLNSGVSIRLIDERE------EGKEDHFHYDGGIQAFVDY 232 Query: 276 KLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGL 334 N++ ++ EIF E++ VE A+ W + I + N I +GGTH SG Sbjct: 233 LNTNKTPVNEEIFYFDLERED--GIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLSGF 290 Query: 335 RVALTRGIKKYAELTQNKRAIS-------IISDDLMISAVGILSVFIREPEFAGQTKTKL 387 R ALTR + Y + DD ++SV + +P+F+ QTK KL Sbjct: 291 RTALTRTLNSYMTKEGLNKTKKGGATETSATGDDAREGLTAVISVKVPDPKFSSQTKDKL 350 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRK 446 VS + + VE A+ + YL++NP A ++ +++ + R RK RE+ R+ + Sbjct: 351 VSSEVKTAVEQAMGEKLGEYLLENPSIARTIIMKIVDAARAREAARKAREMTRRKGVLDI 410 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +E++IVEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K Sbjct: 411 AGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 470 Query: 507 IRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYD 565 + ++Q++ L+ ALGC R +Y E LRY +IIMTDADVDG+HI +LLLTFFY++M + Sbjct: 471 MISSQEVGTLITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 530 Query: 566 LIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++E+ H+F+ PPL+++ +G + Y D++ + L Sbjct: 531 IMERGHIFIAQPPLYKVKKGKQERYIKDDDGLTEYLTTLALDN 573 Score = 140 bits (352), Expect = 8e-31, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K A + + LE K I R+KGLGEM QL ET MD R +L Sbjct: 717 VKRGDKVNPA---ANFEDALEWLMAESKRGQYIQRYKGLGEMNPEQLWETTMDPETRRML 773 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + LMG + R KFI++ A + ++ Sbjct: 774 QVTIEDAI----AADQLFTTLMGDHVEPRRKFIEDNALKVSNLD 813 >gi|89256831|ref|YP_514193.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS] gi|115315217|ref|YP_763940.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|167009278|ref|ZP_02274209.1| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica FSC200] gi|290954382|ref|ZP_06559003.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica URFT1] gi|295312203|ref|ZP_06803005.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica URFT1] gi|89144662|emb|CAJ79986.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS] gi|115130116|gb|ABI83303.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 803 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEVFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|118497199|ref|YP_898249.1| DNA gyrase subunit B [Francisella tularensis subsp. novicida U112] gi|194323498|ref|ZP_03057275.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE] gi|254372564|ref|ZP_04988053.1| hypothetical protein FTCG_00127 [Francisella tularensis subsp. novicida GA99-3549] gi|118423105|gb|ABK89495.1| DNA gyrase subunit B [Francisella novicida U112] gi|151570291|gb|EDN35945.1| hypothetical protein FTCG_00127 [Francisella novicida GA99-3549] gi|194322353|gb|EDX19834.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE] Length = 803 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|212703755|ref|ZP_03311883.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098] gi|212672723|gb|EEB33206.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098] Length = 799 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 220/567 (38%), Positives = 323/567 (56%), Gaps = 19/567 (3%) Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100 + +YDASSI ILEGL VR RP MYIG TD + LHHL EV+DN++DE +AG+ I V Sbjct: 6 ASSYDASSITILEGLSAVRKRPAMYIGSTDVRGLHHLVYEVVDNSIDEAMAGFCTRITVI 65 Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160 L + +TV D+GRGIPV+ HPK +++++T LHAGGKFDN++Y++SGGLHGVG+S Sbjct: 66 LHADNSVTVRDDGRGIPVDIHPK-EGVPAVQVVMTKLHAGGKFDNNSYKVSGGLHGVGVS 124 Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220 VNALS+ L VTV R + Q +SRG+P L + + GT + F+PD +IF Sbjct: 125 CVNALSEWLTVTVRRDGKRYRQHYSRGVPQDQLTVIGEA-DGHGTTVRFQPDEQIFEV-L 182 Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280 F L K + AYL+ + ++ E F+ GG++ ++ + Sbjct: 183 EFSYDTLKKRFEELAYLNKGLYIECIDER-------TSETHVFHAEGGIRQFVSDLNSGQ 235 Query: 281 SLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTR 340 I I +++ + E I ++ N I T EGGTH G R ALTR Sbjct: 236 QGIHPIIMAEGVVDNVAIDFALQYNAGYKE---TILTFANNIHTKEGGTHLVGFRTALTR 292 Query: 341 GIKKYAEL----TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396 I Y + T+ + ++ DD+ ++SV + +P+F GQTKTKL + + V Sbjct: 293 AINGYVKNQPDLTKKLKGTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGMV 352 Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLAD 455 + D Y +NP + +++ ++ + R R+ +E V RK A+ LPGKLAD Sbjct: 353 AGMVYDRLTVYFEENPKDIRLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLAD 412 Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515 C +ELFIVEGDSAGGSAKQ RN NQA+LPLRGKILN +K+ N+++ Sbjct: 413 CQSKDPAESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKA 472 Query: 516 LVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574 L+ A+G + + + LRY K+IIMTDADVDGAHI +LLLTFF+++ +++E+ ++++ Sbjct: 473 LITAMGAGIGEEDTDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGYVYI 532 Query: 575 ISPPLFRITQGTKSVYAHDEEHKQKIL 601 PPL+R+ + D+ + L Sbjct: 533 AQPPLYRVHNARMEKFIKDDAELNEFL 559 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 606 KHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT 665 + I I R+KGLGEM QL T M+ R LL+V + + D+ +LMG Sbjct: 723 DEARKGINIQRYKGLGEMNPEQLWVTTMNPENRVLLQVSVEDAN----EASDAFEELMGD 778 Query: 666 KADERFKFIQERASFIDDVG 685 + + R +FI+ A + D+ Sbjct: 779 RVEPRREFIERNALSVQDLD 798 >gi|167589703|ref|ZP_02382091.1| DNA gyrase subunit B [Burkholderia ubonensis Bu] Length = 824 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 236/594 (39%), Positives = 337/594 (56%), Gaps = 33/594 (5%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 Q + +Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 6 NTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 65 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVE--NHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 N I V + + ++V DNGRGIP + + K +S EI++T LHAGGKFD ++Y++S Sbjct: 66 NDIHVIIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 125 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLEKKEKV 199 GGLHGVG+S VNALS L +TV R +F RG+ +SP++ Sbjct: 126 GGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIETVDGVEVSPMQLIGDT 185 Query: 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPE 259 N RGT + F DP IFG + L K + ++L+ V+ + + E Sbjct: 186 EN-RGTEVHFMADPTIFGTV-EYHYDILAKRMRELSFLNNGVRIRLTDLRSGKEDD---- 239 Query: 260 KEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSY 318 F F GG+K +++ + +S + IF EK G VE A+ W + + + Sbjct: 240 ---FAFAGGVKGFVEFINKTKSTLHPTIFHVNGEKDGV---GVEVAMQWNDSYNENVLCF 293 Query: 319 CNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIRE 376 N I +GGTH +GLR A+TR I KY + K + DD+ +LSV + E Sbjct: 294 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPE 353 Query: 377 PEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 P+F+ QTK KLVS + + VE + + +L++ P +A + ++E + R RK R Sbjct: 354 PKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAR 413 Query: 437 EVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGK 495 E+ R+ + + LPGKLADC + E++IVEGDSAGGSAKQ R+R QA+LPLRGK Sbjct: 414 EMTRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGK 473 Query: 496 ILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASL 554 +LNV A +K+ +++QI+ LV ALGC + LRY ++IIMTDADVDGAHI +L Sbjct: 474 VLNVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTL 533 Query: 555 LLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 LLTF Y++M D+IE+ ++++ PPL++I G Y D+ + G Sbjct: 534 LLTFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDSELNAHMLRLALQG 587 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 738 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 793 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 794 DGIFTTLMGDEVEPRRAFIESNALRAGNID 823 >gi|15618195|ref|NP_224480.1| DNA gyrase subunit B [Chlamydophila pneumoniae CWL029] gi|15835810|ref|NP_300334.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138] gi|16752763|ref|NP_445031.1| DNA gyrase subunit B [Chlamydophila pneumoniae AR39] gi|33241617|ref|NP_876558.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183] gi|6647530|sp|Q9Z8R3|GYRB_CHLPN RecName: Full=DNA gyrase subunit B gi|4376548|gb|AAD18424.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029] gi|7189402|gb|AAF38314.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39] gi|8978649|dbj|BAA98485.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138] gi|28415637|dbj|BAC57414.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae] gi|33236126|gb|AAP98215.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183] Length = 805 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/580 (39%), Positives = 339/580 (58%), Gaps = 18/580 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 NYDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AGY + I+ Sbjct: 3 PKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRID 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHP-----KFPNKSTLEIILTTLHAGGKFDNSTYEISGG 153 V + +G + +VDNGRGIP+E H + S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNALS++L TV + + +FSRGIP++PL + V +++GT I F PDP Sbjct: 123 LHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPL-QYVSVSDRQGTEIVFYPDP 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 KIF FD + L+K + A+L+ + + D++++ F++ GG+++++ Sbjct: 182 KIFST-CTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVT-----FFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + SE + G E A+ W E + SY N I T +GGTH Sbjct: 236 SYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR I Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 296 TGFSTALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + + +NP A +++ V ++ R +K RE+ RK+A+ R Sbjct: 356 SDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC + LRY ++IIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 E + +++ PPL+++++ Y E+ L + Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTN 575 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%) Query: 589 VYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKD 648 + ++++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+ V + Sbjct: 713 YSCYT---LEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKDA 769 Query: 649 LNSLKDTQDSINKLMGTKADERFKFIQERAS--FIDDVG 685 + + LMG + R +FI+ A I+++ Sbjct: 770 V----EADHIFTMLMGEEVPPRREFIESHALSIRINNLD 804 >gi|134302418|ref|YP_001122388.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456719|ref|ZP_03665192.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370164|ref|ZP_04986170.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254874466|ref|ZP_05247176.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987] gi|134050195|gb|ABO47266.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568408|gb|EDN34062.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254840465|gb|EET18901.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987] gi|282158808|gb|ADA78199.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis NE061598] Length = 803 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|56707649|ref|YP_169545.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110670120|ref|YP_666677.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis FSC198] gi|56604141|emb|CAG45143.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320453|emb|CAL08526.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis FSC198] Length = 805 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 4 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 63 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 64 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 122 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P + F Sbjct: 123 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKETFS 181 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 182 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 233 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 234 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 290 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 291 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 350 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 351 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 410 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 411 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 470 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 471 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 530 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 531 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 566 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 708 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 765 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 804 >gi|13474326|ref|NP_105894.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099] gi|14025078|dbj|BAB51680.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099] Length = 823 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 230/582 (39%), Positives = 338/582 (58%), Gaps = 24/582 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 7 NTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +L+ V+L+ +G +TV+DNGRGIP + H S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 67 DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205 HGVG+SVVNALS L + + R IF F+ G ++ + G+ Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLRATGSYEQDKQPGTYEGRSGS 185 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ITF P + F FD L + A+L+ V+ + + ++ Sbjct: 186 SITFFPSAETFT-MVEFDFGTLEHRLRELAFLNSGVRIILTDGRHADIVRHE-----LHY 239 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + + K E+ G TVE A+ W + E ++ N I Sbjct: 240 DGGLEEFVKYLDRVKKPLIEKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR I Y E + K +S+I DD +LSV + +P+F+ Q Sbjct: 297 RDGGTHLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KLVS + + VE + + +L ++P E +++ VI+ + R RK R++ RK+ Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDITRKS 416 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 ++ LPGKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ + I L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 +M +LIE+ HL++ PPL+++T+G S Y +E ++ L E Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIE 578 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM A QL ET +D N R+LL+V++N D Sbjct: 740 ALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R +FIQ+ A + ++ Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822 >gi|90415375|ref|ZP_01223309.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207] gi|90332698|gb|EAS47868.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207] Length = 804 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 224/569 (39%), Positives = 337/569 (59%), Gaps = 20/569 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 + NYD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AG+ + I Sbjct: 2 TDEQNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 ++ + + +TV DNGRGIP E H S E+I+T LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KIVIHQDESITVSDNGRGIPTEMHD--EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 119 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS L +T+ R + Q +S G P PL + GT + F P F Sbjct: 120 GVSVVNALSVALRLTIRRNGKVHEQHYSHGEPQGPLTIVGDT-DVSGTEVHFVPSADTFS 178 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 + F L K + ++L+ V+ + ++ E E + + GGL+ +++ Sbjct: 179 NI-KFHFDVLAKRLRELSFLNSGVRIVLADERNGKE-------EVYAYEGGLRAFVEFLN 230 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 N++ ++ + GT +VE A+ W + I Y N I +GGTH +G R Sbjct: 231 TNKTTVNKVMHFSTQRDDGT---SVEVALQWNDGFQENIHCYTNNIPQRDGGTHLAGFRS 287 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 ALTRG+ Y E K ++ DD I+SV + +P+F+ QTK KLVS + + Sbjct: 288 ALTRGLNTYIEKEGINGKAKVATTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKT 347 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKL 453 VE + + F +L++ P +A ++ +I+ + R RK R RK A+ LPGKL Sbjct: 348 AVEQEMGEKFTEFLLEFPQDARAVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKL 407 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +EL++VEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ Sbjct: 408 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEV 467 Query: 514 MDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L+ ALGC ++ LRY V+IMTDADVDG+HI +LLLTFF+++M +L+EQ H+ Sbjct: 468 GTLITALGCGIGAEEFNVTKLRYHTVVIMTDADVDGSHIRTLLLTFFFRQMRELVEQGHI 527 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKIL 601 F+ PPL+++ +G Y D++ + L Sbjct: 528 FIAQPPLYKVNRGKSEKYVKDDDALLEYL 556 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + L+ + I R+KGLGEM QL +T MD + R +LRV I + Sbjct: 721 EALDWLMAESRRGISTQRYKGLGEMNPGQLWDTTMDPDVRRMLRVTIEDAI----AADQM 776 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A + ++ Sbjct: 777 FTTLMGDQVEPRRDFIETNALSVVNLD 803 >gi|241765810|ref|ZP_04763750.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN] gi|241364292|gb|EER59447.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN] Length = 874 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 230/634 (36%), Positives = 343/634 (54%), Gaps = 45/634 (7%) Query: 11 TLPPQSQGSSEKLKKSGEIPDSPA--FANQSASDNYDASSIRILEGLEPVRMRPGMYIGG 68 P+ + +P AS++Y +I ILEGLE VR RPGMYIG Sbjct: 5 NTQPEPTENGSTGPGEPAMPAVTKIDTNQAGASESYGEGAITILEGLEAVRKRPGMYIGD 64 Query: 69 T-DEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVEN---HPKF 124 T D LHHL EV+DN++DE +AG+ + I V++ + ++V DNGRGIP Sbjct: 65 TSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVTDNGRGIPTGVKMDDKHE 124 Query: 125 PNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKF 184 P +S EI LT LHAGGKF+ ++Y++SGGLHGVG+S VNALS +L +TV R+ + +F Sbjct: 125 PKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKKLRLTVRREGKVHVLEF 184 Query: 185 S------------RGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQ 232 S G+ +SP++ + +KRGT + F PD +IF + F L K + Sbjct: 185 SKGFVQNRIIETVDGVEVSPMKVTGET-DKRGTEVHFLPDTEIFKENNEFHYEILAKRLR 243 Query: 233 SKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKT 292 ++L+ V+ ++ E F GG++ +++ + ++++ F Sbjct: 244 ELSFLNNGVRIRLKDERSGKEDD-------FSGAGGVRGFVEFINKGKTVLHPTSFYAAG 296 Query: 293 EKKGTHRGT-------VEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKK 344 E+ G VE A+ W ++ + N I +GGTH +GLR A+TR I K Sbjct: 297 ERPAETYGGIPGTHIGVEVAMQWNSAYTEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINK 356 Query: 345 YAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRD 402 Y E + K + + DD+ +LSV + EP+F+ QTK KLVS + + VE+ + Sbjct: 357 YIEENELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGK 416 Query: 403 PFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTA-IRKLRLPGKLADCSQNIA 461 YL + P +A + ++E + R RK RE+ R+ + + LPGKLADC + Sbjct: 417 LLTDYLQEKPNDAKIICGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDP 476 Query: 462 HGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALG 521 E++IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A EK+ + +I+ L+ ALG Sbjct: 477 SLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALG 536 Query: 522 CRT--------RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLF 573 + LRY ++IIMTDADVDGAHI +LLLTFFY++M +L+E+ H++ Sbjct: 537 TGIGKAGGSTGSDDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIY 596 Query: 574 LISPPLFRITQGTKSVYAHDEEHKQKILEEFKKH 607 + PPL+++ G + +Y D L + Sbjct: 597 IAQPPLYKVKAGKEELYLKDAPALDGFLLRIALN 630 Score = 130 bits (326), Expect = 8e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 ++ ++ + R+KGLGEM QL ET MD N R LLRV+I+ + + Sbjct: 788 DFRQAMKWLISEAERTTSRQRYKGLGEMNPEQLWETTMDPNVRRLLRVQIDDAI----EA 843 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + + R FI+ A ++ Sbjct: 844 DRVFTMLMGDEVEPRRDFIETNALRAGNID 873 >gi|323524380|ref|YP_004226533.1| DNA gyrase subunit B [Burkholderia sp. CCGE1001] gi|323381382|gb|ADX53473.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1001] Length = 823 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 235/599 (39%), Positives = 344/599 (57%), Gaps = 37/599 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 2 TETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNS 146 GY N I+V + + +++ DNGRG+P + H P +S EI++T LHAGGKFD + Sbjct: 62 GYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHE--PKRSAAEIVMTELHAGGKFDQN 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194 +Y++SGGLHGVG+S VNALS L +TV R +F RG+P SP++ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 N RGT + F D IFG+ + L K + ++L+ V+ + E Sbjct: 180 VVGDTEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE- 236 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313 E+F F GG+K +++ + +S++ IF EK G VE A+ W + Sbjct: 237 ------EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGV---GVEVAMQWNDSYNE 287 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + + N I +GGTH +GLR A+TR + KY + K + DD+ +LS Sbjct: 288 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLS 347 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F+ QTK KLVS + + VE + + +L++ P +A + +++ + R Sbjct: 348 VKVPEPKFSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDA 407 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+L Sbjct: 408 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 467 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549 PLRGK+LNV A +K+ +++QI+ L+ ALGC + E LRY ++IIMTDADVDGA Sbjct: 468 PLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLEKLRYHRIIIMTDADVDGA 527 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 HI +LLLTFFY++M ++IE+ ++++ PPL++I G Y DE + + G Sbjct: 528 HIRTLLLTFFYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDETEVNAHILKLALQG 586 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + + R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|83642921|ref|YP_431356.1| DNA gyrase subunit B [Hahella chejuensis KCTC 2396] gi|83630964|gb|ABC26931.1| DNA gyrase, B subunit [Hahella chejuensis KCTC 2396] Length = 805 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 222/559 (39%), Positives = 336/559 (60%), Gaps = 19/559 (3%) Query: 49 IRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL 107 I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DN++DE +AGY +++++ + + Sbjct: 12 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEVKITIHADESI 71 Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167 TV D+GRGIPV+ H + S E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS Sbjct: 72 TVSDDGRGIPVDIHEEM-GVSAAEVIMTMLHAGGKFDDNSYKVSGGLHGVGVSVVNALSK 130 Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227 EL +T+ R N + Q + G+P +PL + ++ GT + F P + F + F L Sbjct: 131 ELRLTIRRDNKVHEQVYKHGVPQAPLSVVGET-DRSGTEVHFFPSAETFNNI-EFHYDIL 188 Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287 K + A+L+ VK ++ + E F + GGL+ +++ + ++ I+ Sbjct: 189 AKRLRELAFLNSGVKITLHDERSA-------KTETFEYEGGLRAFVEYLNQTKNPINKVF 241 Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346 K + GT VE ++ W + I + N I +GGTH +G R ALTR + Y Sbjct: 242 HFLKEREDGT---AVEVSLQWNDSFQENIFCFTNNIPQRDGGTHLAGFRAALTRSLNSYI 298 Query: 347 EL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404 E K ++ DD I+SV + +P+F+ QTK KLVS + + VE + F Sbjct: 299 EKESMLKKTKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNAYF 358 Query: 405 DHYLVQNPIEATKLLEWVIERSEERLRRRKQR-EVNRKTAIRKLRLPGKLADCSQNIAHG 463 +L +NP +A ++ +I+ + R RK R RK A+ LPGKLADC + Sbjct: 359 ADFLAENPQDAKNVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 418 Query: 464 TELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCR 523 +EL+IVEGDSAGGSAKQ R+R QA+LPL+GKILNV A +K+ ++ ++ L+ ALGC Sbjct: 419 SELYIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 478 Query: 524 TRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRI 582 + + LRY +IIMTDADVDG+HI +LLLTFF+++M ++IE H+F+ PPL+++ Sbjct: 479 IGREEFDVNKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMREIIENGHVFIAMPPLYKV 538 Query: 583 TQGTKSVYAHDEEHKQKIL 601 +G + Y DE+ Q+ L Sbjct: 539 KRGKQEQYVKDEKALQQYL 557 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K+ E L K + + I R+KGLGEM QL ET MD R ++ Sbjct: 708 VKRGEKTQAI---ETFDDSLVWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPAVRRMM 764 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + N LMG + R FIQ A + ++ Sbjct: 765 KVTIEDAI----AADQIFNTLMGDDVEPRRDFIQTNALSVMNLD 804 >gi|187932024|ref|YP_001892009.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712933|gb|ACD31230.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 803 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 347/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+S+Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDSSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ ++ GT ITF+P + F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DETGTLITFKPSKETFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|32490765|ref|NP_871019.1| hypothetical protein WGLp016 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165971|dbj|BAC24162.1| gyrB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 803 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 228/564 (40%), Positives = 343/564 (60%), Gaps = 18/564 (3%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NY +SSI+IL+GLE V+ RPGMYIG TD+ LHH+ EV+DN++DE +AG+ I V++ Sbjct: 4 NYTSSSIKILKGLEAVKKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGFCKKIIVTI 63 Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161 + ++V D+GRGIPV+ H + S E+I+T LHAGGKFDN +Y++SGGLHGVGISV Sbjct: 64 HEDKSISVEDDGRGIPVDIHEE-EGISAAEVIMTVLHAGGKFDNDSYKVSGGLHGVGISV 122 Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221 VNALS++L +T+ R ++Q ++ G P PL+K K R GT+I F P+ IF Sbjct: 123 VNALSEKLELTIYRNGKEYNQNYNFGSPCFPLKKIGKSRK-TGTKIRFWPNLSIFKKNIE 181 Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRS 281 F L K ++L+ + K K F++ GG+K +++ +N++ Sbjct: 182 FQYEILFKRLMELSFLNSNISIYLIDIKNNKNK-------HFHYEGGIKEFVKYLHKNKN 234 Query: 282 LISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTR 340 I S +F EK VE A+ W + I + N I +GG+H G R A+TR Sbjct: 235 PIHSNMFYFIKEKDKIL---VEIALQWNDGFKENINCFTNNISQKDGGSHLIGFRSAITR 291 Query: 341 GIKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398 I Y + K + DD V I+SV + +P+F+ QTK KLVS + + VE+ Sbjct: 292 TINSYMDKEGYNKKSKVITTGDDTREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVES 351 Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV-NRKTAIRKLRLPGKLADCS 457 L + F +L++NP ++ ++ +++ + R ++ RE+ +K A+ + +PGKLA C Sbjct: 352 LLNEQFFIFLLENPKDSKFIVNKILDAARVREAAKRIREMTRKKGALDVIGIPGKLASCQ 411 Query: 458 QNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLV 517 +N EL++VEGDSAGGSAKQ RNR NQA+LPL+GKILNV A +K+ ++Q++ L+ Sbjct: 412 ENNPSLCELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 471 Query: 518 QALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLIS 576 ALGC R +Y + LRY +IIMTDAD+DG+HI +LLLTFFY++M ++I++ +LF+ Sbjct: 472 TALGCGIGRDEYNPDKLRYHCIIIMTDADIDGSHIRTLLLTFFYRQMPEVIDRGYLFIAQ 531 Query: 577 PPLFRITQGTKSVYAHDEEHKQKI 600 PPL++I G Y ++ + Sbjct: 532 PPLYKIKIGKNKKYIKNDNAMENF 555 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G + E L K + + I R+KGLGEM QL ET M+ R+++ Sbjct: 706 VKKGNNRHNIKNIEEACNWL---LKESRQGMTIQRYKGLGEMNPEQLWETTMNPVSRSMM 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI++ A + ++ Sbjct: 763 QVTIKDAIV----ADQLFSTLMGDSVEPRKSFIKKNALNVSNID 802 >gi|260463130|ref|ZP_05811332.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075] gi|259030980|gb|EEW32254.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075] Length = 823 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 228/580 (39%), Positives = 337/580 (58%), Gaps = 24/580 (4%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYA 94 A Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+A Sbjct: 7 NTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 95 NLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGL 154 +L+ V+L+ +G +TV+DNGRGIP + H S E+I+T LHAGGKFD ++Y++SGGL Sbjct: 67 DLVTVTLNPDGSVTVIDNGRGIPTDIH-TGEGISAAEVIMTQLHAGGKFDQNSYKVSGGL 125 Query: 155 HGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPL---------SPLEKKEKVRNKRGT 205 HGVG+SVVNALS L + + R IF F+ G ++ + G+ Sbjct: 126 HGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGAYEQDKQPGTYEGRSGS 185 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 ITF P + F FD L + A+L+ V+ + + ++ Sbjct: 186 EITFFPSSETFT-MVEFDFGTLEHRLRELAFLNSGVRIVLTDARHADVLRHE-----LHY 239 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEI-TSYCNTILT 324 GGL+ +++ + + + K E+ G TVE A+ W + E ++ N I Sbjct: 240 DGGLEEFVKYLDRVKKPLIDKPIAIKAERDGI---TVEVAMWWNDSYHENVLAFTNNIPQ 296 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR I Y + + K +S+I DD +LSV + +P+F+ Q Sbjct: 297 RDGGTHLAGFRGALTRQITGYGDSSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQ 356 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKT 442 TK KLVS + + VE + + +L ++P E +++ VI+ + R RK R++ RK+ Sbjct: 357 TKDKLVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDITRKS 416 Query: 443 AIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASA 502 ++ LPGKLADC + +E+FIVEGDSAGGSAK R+R NQA+LPLRGKILNV A Sbjct: 417 SLGVTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERA 476 Query: 503 GSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQ 561 +++ + I L+ ALG + LRY K+I+MTDADVDGAHI +LLLTFF++ Sbjct: 477 RFDRMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFR 536 Query: 562 EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 +M +LIE+ HL++ PPL+++T+G S Y +E ++ L Sbjct: 537 QMPELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFL 576 Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 +L G+ + + R+KGLGEM A QL ET +D N R+LL+V++N D Sbjct: 740 ALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDAT----DADSL 795 Query: 659 INKLMGTKADERFKFIQERASFIDDVG 685 ++LMG + + R +FIQ+ A + ++ Sbjct: 796 FSRLMGDEVEPRREFIQDNALSVANLD 822 >gi|332112496|gb|EGJ12289.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2] Length = 657 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 242/664 (36%), Positives = 347/664 (52%), Gaps = 40/664 (6%) Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLD 102 +Y +SIR+L+GLEPV+ RPGMY T H+ EVIDNA DE +AG+ I V+L Sbjct: 7 SYAEASIRVLKGLEPVKQRPGMY---TRTDNPLHVVQEVIDNAADEALAGFGKRIAVTLH 63 Query: 103 GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNST---YEISGGLHGVGI 159 +G + V D+GRGIP HP+ LEI+ T LHAGGKFD + Y SGGLHGVG+ Sbjct: 64 ADGSVAVEDDGRGIPFGLHPE-EQVPVLEIVYTRLHAGGKFDKGSGGAYSFSGGLHGVGV 122 Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPL---EKKEKVRNKRGTRITFRPDPKIF 216 SV NAL+ L VTV R+ + F G + K + GTR+ PDPK F Sbjct: 123 SVTNALATRLEVTVWREGQCATLAFGNGGEVIEPLAVRKATSSERRHGTRVRVWPDPKYF 182 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 LL + +SKA L V + +K E + + + GL+ YL Sbjct: 183 ES-PELPRGELLHLLRSKAVLMPGVTVTLATEK-------TGETQTWRYESGLRDYLLQS 234 Query: 277 LENRS----LISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 L ++ + W +A+ +E SY N I T GGTHE Sbjct: 235 LAAEPLIPLFEGAQYAAANETESFAEGEGAAWCVAFTDEGTTLRESYVNLIPTVAGGTHE 294 Query: 332 SGLRVALTRGIKKYAE-LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSL 390 SGL+ L + +K + E + + ++ +D+ A +LS + +P+F GQ K +L S Sbjct: 295 SGLKDGLFQAVKGFIELHALLPKGVKLMPEDVFSRASFVLSAKVLDPQFQGQIKERLNSR 354 Query: 391 DAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLP 450 DA + V + +R + +L Q+ KL E VI +++ R R ++ E + + + L P Sbjct: 355 DALKLVASFVRPALEIWLNQHVEFGKKLAELVIRQAQTRQRAGQKVEKKKGSGVAVL--P 412 Query: 451 GKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNN 510 GKL DC E+F+VEGDSAGGSAK R++ QA+LPLRGK+LN + + N Sbjct: 413 GKLTDCESRDLSLNEVFLVEGDSAGGSAKMGRDKETQAILPLRGKVLNSWEVERDLLFKN 472 Query: 511 QQIMDLVQALGCRTRSQYREED---LRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 +I D+ ALG E D LRY KV I++DADVDG+HI LLLT F++ LI Sbjct: 473 NEIHDISVALGVDPHGPADEPDLSGLRYGKVCILSDADVDGSHIQVLLLTLFFRHFPKLI 532 Query: 568 EQKHLFLISPPLFRIT---QGTK---SVYAHDEEHKQKILEEFKKHG--KGKIEISRFKG 619 E+ H+++ PPL+RI +G + +YA D+ + L++ +K G +G ISRFKG Sbjct: 533 ERGHVYVARPPLYRIDAPARGKRPAAKLYALDDGELEAALDKLRKEGAREGSWTISRFKG 592 Query: 620 LGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGT-KADERFKFIQERA 678 LGEM A QL +T ++ R LL V L +T + +LMG +A R ++ RA Sbjct: 593 LGEMNAEQLWDTTLNPETRRLLPVAF--GAPGLDNTVELFTRLMGKGEAQARRDLMELRA 650 Query: 679 SFID 682 ++ Sbjct: 651 DAVE 654 >gi|190572096|ref|YP_001969941.1| DNA gyrase subunit B [Stenotrophomonas maltophilia K279a] gi|190010018|emb|CAQ43623.1| putative DNA gyrase subunit B [Stenotrophomonas maltophilia K279a] Length = 819 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 21/583 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90 S + + NYDA+SI LEGLE VR RPGMYIG D LHH+ EV+DN++DE + Sbjct: 2 SDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFP-----NKSTLEIILTTLHAGGKFDN 145 AG+A+ + V++ +G ++V DNGRGIP H + S E+++T LHAGGKFD+ Sbjct: 62 AGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFDD 121 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS +L V V + + Q+FS G ++ L K E RGT Sbjct: 122 NSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKLETTTK-RGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P F D F L + + ++L+ VK + ++ +++F++ Sbjct: 181 TVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADERGD------GRRDDFHY 234 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GG++++++ + ++ + + + E G V+ A+ W + + + N I Sbjct: 235 EGGIRSFVEHLAQLKTPLHPNVISVTGEHNGI---VVDVALQWTDSYQETMYCFTNNIPQ 291 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + Y E + I++ DD+ + +LSV + +P F+ Q Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRK 441 TK KLVS D + VENA + +L +NP EA + +++ + R RK R+ RK Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVER 471 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +++ ++ Q+ L+ ALG R +Y + LRY K+IIMTDADVDGAHI +LLLTFFY Sbjct: 472 ARFDRMLSSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFY 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEE 603 ++M +LIE+ ++++ PPL++I QG + +Y D+ L Sbjct: 532 RQMPELIERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLAS 574 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 17/143 (11%) Query: 549 AHIASLLLTFFYQ------EMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602 HI L ++ F + + + I++G KS+ Q L Sbjct: 687 QHIQVLPMSAFESGELRAIHQASKLLHGLVREGAT----ISRGAKSIEVDSFAKAQNWLL 742 Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662 E K G+ +I RFKGLGEM QL +T ++ R LL+V I + + L Sbjct: 743 EEAKRGR---QIQRFKGLGEMNPEQLWDTTVNPETRRLLQVRIEDAV----AADQIFSTL 795 Query: 663 MGTKADERFKFIQERASFIDDVG 685 MG + R FI++ A + ++ Sbjct: 796 MGDVVEPRRDFIEDNALKVANLD 818 >gi|154245817|ref|YP_001416775.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2] gi|154159902|gb|ABS67118.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2] Length = 813 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 234/581 (40%), Positives = 342/581 (58%), Gaps = 22/581 (3%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIA 91 ++ D+Y A SI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +A Sbjct: 2 AEPVPAASPDDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEIS 151 G+A + V+L+ +G +TV D+GRGIP + H K S E+I+T LHAGGKF+ ++Y++S Sbjct: 62 GWAKEVTVTLNADGSVTVTDDGRGIPTDIH-KEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVR-NKRGTRITFR 210 GGLHGVG+SVVNALS L +T+ R +F G +PL+ +KRGTR+TF Sbjct: 121 GGLHGVGVSVVNALSTTLDLTIWRDGKEHFMRFRHGDAEAPLKVVGDAPGDKRGTRVTFT 180 Query: 211 PDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLK 270 P P+ F FD A L + A+L+ V + + K EE ++ GG++ Sbjct: 181 PSPETFTKI-DFDYATLEHRLRELAFLNSGVLIILTDARTADVKR-----EELHYEGGVE 234 Query: 271 TYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGT 329 +++ ++S + + + EK G TVE A++W + I + N I + GT Sbjct: 235 AFVKYLDRSKSALLQKPVVIRAEKDG---MTVEAALSWNDGYHENILCFTNNIPQRDRGT 291 Query: 330 HESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKL 387 H +G ALTR + YA + K + +D +LSV + +P+F+ QTK KL Sbjct: 292 HFTGFAAALTRQVIGYANTSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKL 351 Query: 388 VSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRK 446 VS + + VE+ + + + +NP EA ++ V+E + R RK R+ RK+ + Sbjct: 352 VSSEVRPVVESLVSEALSVWFEENPAEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDV 411 Query: 447 LRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEK 506 LPGKLADC + +E+FIVEGDSAGGSAKQ R+R+ QAVLPLRGKILNV A +K Sbjct: 412 ASLPGKLADCQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDK 471 Query: 507 IRNNQQIMDLVQALGCRTRSQYREE------DLRYEKVIIMTDADVDGAHIASLLLTFFY 560 + +++QI L+ ALG LRY K+IIMTDADVDGAHI +LLLTFF+ Sbjct: 472 MLSSEQIGTLITALGTGIGRDDGHSGGFDLAKLRYHKIIIMTDADVDGAHIRTLLLTFFF 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKIL 601 ++M +L++ HLF+ PPL+++T+G Y DE+ + L Sbjct: 532 RQMPELVDAGHLFIAQPPLYKVTRGKSETYLKDEKALEDYL 572 Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Query: 599 KILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDS 658 + + G+ + + R+KGLGEM QL ET +D N R+LL+V + + D Sbjct: 731 DLFDAVTDTGRKGLSLQRYKGLGEMNPEQLWETTLDVNARSLLQVRV----KEVDAADDL 786 Query: 659 INKLMGTKADERFKFIQERA 678 N+LMG + R +FIQE A Sbjct: 787 FNRLMGDTVEPRREFIQENA 806 >gi|94308948|ref|YP_582158.1| DNA gyrase subunit B [Cupriavidus metallidurans CH34] gi|93352800|gb|ABF06889.1| DNA gyrase, subunit B [Cupriavidus metallidurans CH34] Length = 841 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 228/594 (38%), Positives = 342/594 (57%), Gaps = 36/594 (6%) Query: 36 ANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIAGYA 94 ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +AGY Sbjct: 5 QKPQQENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYC 64 Query: 95 NLIEVSLDGNGFLTVVDNGRGIP--VENHPKFP-NKSTLEIILTTLHAGGKFDNSTYEIS 151 I+V++ + +++VDNGRGIP V+ K +S EI +T LHAGGKF+ ++Y++S Sbjct: 65 TEIQVTIHSDNSISIVDNGRGIPPAVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVS 124 Query: 152 GGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSP----------------LEK 195 GGLHGVG+S VNALS L +TV R + +F++G + K Sbjct: 125 GGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQNRVIETVTGPDGQPVEVSPMK 184 Query: 196 KEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKY 255 +KRGT + F D +IF + F L K + ++L+ V + Sbjct: 185 VIGATDKRGTEVHFLADEEIFTNV-EFHYEVLSKRIRELSFLNNGVHIKLVDQR------ 237 Query: 256 GIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PE 314 ++E+F F GG+K +++ +++ + IF EK G +VE A+ W + + Sbjct: 238 -TGKEEDFAFSGGVKGFVEYINRSKTTLHPNIFYANAEKDGI---SVEVAMQWNDGYNEQ 293 Query: 315 ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILSV 372 + + N I +GGTH +GLR A+TR I KY E + K + DD+ +LSV Sbjct: 294 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETSGDDMREGLACVLSV 353 Query: 373 FIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRR 432 + EP+F+ QTK KLVS + + VE + +L++ P +A + +++ + R Sbjct: 354 KVPEPKFSSQTKDKLVSSEVRLPVEELVGKALTDFLLETPNDAKIICGKIVDAARAREAA 413 Query: 433 RKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLP 491 RK RE+ R+ + + LPGKLADC + +ELF+VEGDSAGGSAKQ R+R QA+LP Sbjct: 414 RKAREMTRRKGVMDGMGLPGKLADCQEKDPAMSELFLVEGDSAGGSAKQGRDRKFQAILP 473 Query: 492 LRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAH 550 L+GKILNV A +K+ ++Q+++ L+ ALG + E LRY ++IIMTDADVDG+H Sbjct: 474 LKGKILNVERARFDKMLSSQEVLTLITALGTGIGKEDYNLEKLRYHRIIIMTDADVDGSH 533 Query: 551 IASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEF 604 I +LLLTFFY++M D+IE+ ++++ PPL++I G + Y D+ + + Sbjct: 534 IRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDNELNAYMLKL 587 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Query: 581 RITQG-TKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRT 639 ++ +G + + + ++ + + R+KGLGEM QL ET +D +R Sbjct: 739 KVRRGEGEKMREQTVADFHQAMQWLLSEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRR 798 Query: 640 LLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 LLRV+I + LMG + + R FI+ A ++ Sbjct: 799 LLRVQIEDAI----AADQIFTTLMGDEVEPRRNFIESNALVARNID 840 >gi|328675722|gb|AEB28397.1| DNA gyrase subunit B [Francisella cf. novicida 3523] Length = 803 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P F Sbjct: 121 GVSVVNALSEQLKLTIYRNGVEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|254374023|ref|ZP_04989505.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548] gi|151571743|gb|EDN37397.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548] gi|328676671|gb|AEB27541.1| DNA gyrase subunit B [Francisella cf. novicida Fx1] Length = 803 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W + I + N I +GGTH SGL+ Sbjct: 232 NSKKPIHENVIAVNGIKDDIQ---VELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKA 288 Query: 337 ALTRGIKKYAELT--QNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQR 394 A+TR + Y E K +++ +D +LSV + +P+F+ QTK KLVS D + Sbjct: 289 AVTRTMNNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKS 348 Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRKTAIRKLRLPGKL 453 VE+ + + +L++NP EA + E +++ ++ R RK RK A+ LPGKL Sbjct: 349 AVESLVNEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKL 408 Query: 454 ADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQI 513 ADC + +E+++VEGDSAGGSAKQAR+R QA+LPL+GKILNV A +K+ +Q++ Sbjct: 409 ADCQEKDPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEV 468 Query: 514 MDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHL 572 L++ALGC Y + RY K+I+MTDADVDG+HI +LLLTFFY++M +L+E+ +L Sbjct: 469 ATLIKALGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYL 528 Query: 573 FLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++ PPL+++ +G + Y DE+ + L G Sbjct: 529 YIAQPPLYKVKKGKQETYLKDEDALAEYLGNIGLEG 564 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 + +G K Y + + ++ K + ++ R+KGLGEM QL ET MD + R LL Sbjct: 706 VERGAKKEYV---DDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLL 762 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + + R FI+ A + ++ Sbjct: 763 QVSIKDAV----EADALFTTLMGDEVEPRRNFIESNALNVVNLD 802 >gi|330444523|ref|YP_004377509.1| DNA gyrase subunit B [Chlamydophila pecorum E58] gi|328807633|gb|AEB41806.1| DNA gyrase, B subunit [Chlamydophila pecorum E58] Length = 801 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 232/575 (40%), Positives = 335/575 (58%), Gaps = 18/575 (3%) Query: 42 DNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101 NYDAS+I +LEGL+ VR RPGMYIG LHHL EVIDN++DE +AGY I V + Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDAGISGLHHLVYEVIDNSIDEALAGYCTEINVRI 65 Query: 102 DGNGFLTVVDNGRGIPVENH-----PKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHG 156 +G +T+ DNGRGIPVE H + S LE++LT LHAGGKFD +Y++SGGLHG Sbjct: 66 LEDGGITISDNGRGIPVEIHKRESEKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHG 125 Query: 157 VGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIF 216 VG+S VNALS++L TV + I+ +FSRG+P +PL++ N+ GT ITF PDPKIF Sbjct: 126 VGVSCVNALSEKLVATVCKGQQIYQMEFSRGVPETPLQRLGATENQ-GTTITFYPDPKIF 184 Query: 217 GDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTK 276 FD + L+K + A+L+ ++ + D++++ F++ GG+++++ Sbjct: 185 SVCV-FDRSILMKRLRELAFLNRGIRIHFEDDRDVSFDKVT-----FFYEGGIQSFVNYL 238 Query: 277 LENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGL 334 +N+ + E + G E ++ W E I SY N I T +GGTH +G Sbjct: 239 NQNKESLFPEPIYIFGVRPGDDGDAEFEASLQWNSGYSELIYSYVNNIPTRQGGTHLTGF 298 Query: 335 RVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392 ALTR + Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 299 STALTRVLNAYIKANNLAKNEKLSLTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNGSV 358 Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451 + + + +NP A ++E V ++ R +K RE+ RK+A+ RLPG Sbjct: 359 GSVAQQVTGEVLTTFFDENPQIAKLIVEKVFIAAQAREAAKKARELTLRKSALDSARLPG 418 Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511 KL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI NQ Sbjct: 419 KLIDCLEKDPEKCEVYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQ 478 Query: 512 QIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQK 570 +I ++ ALGC S E LRY+++IIMTDADVDG+HI +LLLTFFY+ M LIE + Sbjct: 479 EIGTIIAALGCGIGSDTFNLEKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENE 538 Query: 571 HLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 +++ PPL+++++ + Y E L Sbjct: 539 CVYIAQPPLYKVSKKKEFRYILSENEMDDYLLTLG 573 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + Q+++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+RV + + Sbjct: 709 YTCYTLQEVINYLKTIGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKDAV-- 766 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFI--DDVG 685 + LMG + R +FI+ A I +++ Sbjct: 767 --EADHVFTMLMGEEVPPRREFIESHALSIRMNNLD 800 >gi|329942857|ref|ZP_08291636.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10] gi|313848029|emb|CBY17027.1| DNA gyrase subunit B [Chlamydophila psittaci RD1] gi|325506975|gb|ADZ18613.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC] gi|328815117|gb|EGF85106.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10] gi|328914698|gb|AEB55531.1| DNA gyrase, B subunit [Chlamydophila psittaci 6BC] Length = 806 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 228/578 (39%), Positives = 335/578 (57%), Gaps = 18/578 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIE 98 + NYDAS+I +LEGL+ VR RPGMYIG T LHHL EV+DN++DE +AGY + I Sbjct: 3 AKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSEIH 62 Query: 99 VSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDNSTYEISGG 153 V + +G +T+ DNGRGIP++ H K K S LE++LT LHAGGKFD +Y++SGG Sbjct: 63 VRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVSGG 122 Query: 154 LHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDP 213 LHGVG+S VNAL+++L TV + + +FSRG+P++ L+ + GT ITF PD Sbjct: 123 LHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTGLQLLGATDKQ-GTEITFYPDN 181 Query: 214 KIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYL 273 +IF FD + L+K + A+L+ + + D++++ +K F++ GG+++++ Sbjct: 182 EIFSSCV-FDRSILIKRLRELAFLNRGITIIFEDDRDVS-----FDKVIFFYEGGIQSFV 235 Query: 274 QTKLENRSLISSEIFTGKTEKKGTH-RGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHE 331 +N+ + E + G E A+ W E I SY N I T +GGTH Sbjct: 236 SYLNQNKESLFPEPIYISGSRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHL 295 Query: 332 SGLRVALTRGIKKYAELTQNKRAIS--IISDDLMISAVGILSVFIREPEFAGQTKTKLVS 389 +G ALTR + Y + + + +D+ ++SV + P+F GQTK KL + Sbjct: 296 TGFSTALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGN 355 Query: 390 LDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLR 448 D + + + +NP A ++E V ++ R +K RE+ RK+A+ R Sbjct: 356 SDVGSVSQQITGEALTIFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSAR 415 Query: 449 LPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIR 508 LPGKL DC + E++IVEGDSAGGSAKQ R+R QA+LP+RGKILNV A +KI Sbjct: 416 LPGKLIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475 Query: 509 NNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLI 567 NQ+I ++ ALGC S LRY ++IIMTDADVDG+HI +LLLTFFY+ M LI Sbjct: 476 QNQEIGTIIAALGCGIGSDNFNLGKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALI 535 Query: 568 EQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFK 605 E + +++ PPL+++++ Y E+ L Sbjct: 536 ENECVYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLG 573 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%) Query: 592 HDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNS 651 + +++++ K G+ IEI R+KGLGEM A QL +T M+ +RTL+RV + + Sbjct: 714 YTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV-- 771 Query: 652 LKDTQDSINKLMGTKADERFKFIQERASFID--DVG 685 + LMG + R +FI+ A + ++ Sbjct: 772 --EADHIFTMLMGEEVPPRREFIENHALSVKMNNLD 805 >gi|170694067|ref|ZP_02885223.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M] gi|170141139|gb|EDT09311.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M] Length = 823 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 233/599 (38%), Positives = 345/599 (57%), Gaps = 37/599 (6%) Query: 33 PAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVIA 91 N ++Y ASSI+ILEGLE VR RPGMYIG T D LHHL EV+DN++DE +A Sbjct: 2 TETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA 61 Query: 92 GYANLIEVSLDGNGFLTVVDNGRGIPV-----ENHPKFPNKSTLEIILTTLHAGGKFDNS 146 GY N I+V + + +++ DNGRG+P + H P +S EI++T LHAGGKFD + Sbjct: 62 GYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKHE--PKRSAAEIVMTELHAGGKFDQN 119 Query: 147 TYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIP------------LSPLE 194 +Y++SGGLHGVG+S VNALS L +T+ R +F RG+P +SP++ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPIQ 179 Query: 195 KKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEK 254 N RGT + F D IFG+ + L K + ++L+ V+ + + E Sbjct: 180 VVGDTEN-RGTEVHFMADETIFGNV-EYHYDILAKRIRELSFLNNGVRIRLTDQRTGKED 237 Query: 255 YGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-P 313 F F GG+K +++ + +S++ IF EK G VE A+ W + Sbjct: 238 D-------FAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGV---GVEVAMQWNDSYNE 287 Query: 314 EITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAISIISDDLMISAVGILS 371 + + N I +GGTH +GLR A+TR + KY + K + DD+ +LS Sbjct: 288 NVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLS 347 Query: 372 VFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLR 431 V + EP+F+ QTK KLVS + + VE+ + + +L++ P +A + +++ + R Sbjct: 348 VKVPEPKFSAQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDA 407 Query: 432 RRKQREVNRKTA-IRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVL 490 RK RE+ R+ + + LPGKLADC + +E++IVEGDSAGGSAKQ R+R QA+L Sbjct: 408 ARKAREMTRRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAIL 467 Query: 491 PLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTDADVDGA 549 PLRGK+LNV A +K+ +++QI+ L+ ALGC + + LRY ++IIMTDADVDGA Sbjct: 468 PLRGKVLNVEKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGA 527 Query: 550 HIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 HI +LLLTFFY++M ++IE+ ++++ PPLF+I G Y DE + + G Sbjct: 528 HIRTLLLTFFYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDESEVNAHILKLALQG 586 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 596 HKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDT 655 + ++ + I R+KGLGEM QL ET MD R LLRV+I + Sbjct: 737 DFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAI----AA 792 Query: 656 QDSINKLMGTKADERFKFIQERASFIDDVG 685 LMG + R FI+ A ++ Sbjct: 793 DGIFTTLMGDDVEPRRAFIESNALRAGNID 822 >gi|285016825|ref|YP_003374536.1| DNA topoisomerase II (DNA gyrase subunit b) protein [Xanthomonas albilineans GPE PC73] gi|166362463|gb|ABY87167.1| DNA gyrase B [Xanthomonas albilineans] gi|283472043|emb|CBA14550.1| probable dna topoisomerase II (dna gyrase subunit b) protein [Xanthomonas albilineans] Length = 820 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 234/588 (39%), Positives = 351/588 (59%), Gaps = 21/588 (3%) Query: 32 SPAFANQSASDNYDASSIRILEGLEPVRMRPGMYIGGT-DEKALHHLFSEVIDNAMDEVI 90 + + + NYDA+SI LEGLE VR RPGMYIG D LHH+ EV+DN++DE + Sbjct: 2 TDEQNTHANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 61 Query: 91 AGYANLIEVSLDGNGFLTVVDNGRGIPVENHPKFPNK-----STLEIILTTLHAGGKFDN 145 AG+A+ + V++ +G ++V DNGRGIPV H + K S E+++T LHAGGKFD+ Sbjct: 62 AGHADHVAVTIHADGSVSVSDNGRGIPVGKHAQMSKKLDREVSAAEVVMTVLHAGGKFDD 121 Query: 146 STYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGT 205 ++Y++SGGLHGVG+SVVNALS++L + + + + Q++S G L+PL++ + KRGT Sbjct: 122 NSYKVSGGLHGVGVSVVNALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRGT 180 Query: 206 RITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYF 265 + F P K F + F L + + ++L+ VK + ++ +++F++ Sbjct: 181 TLRFWPSVKAFNNNVEFHYDILARRLRELSFLNSGVKIVLADERG------EGRRDDFHY 234 Query: 266 PGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILT 324 GG++++++ ++ + + + E G TVE A+ W + + + N I Sbjct: 235 EGGIRSFVEHLAHLKTPLHPNVISVSGEHNGI---TVEVALQWTDSYQETMYCFTNNIPQ 291 Query: 325 DEGGTHESGLRVALTRGIKKYAELTQNKRA--ISIISDDLMISAVGILSVFIREPEFAGQ 382 +GGTH +G R ALTR + Y E + I++ DD+ + +LSV + +P F+ Q Sbjct: 292 KDGGTHLAGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQ 351 Query: 383 TKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQ-REVNRK 441 TK KLVS D + VENA + +L +NP EA + +++ + R RK RK Sbjct: 352 TKEKLVSSDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRK 411 Query: 442 TAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVAS 501 A+ LPGKLADC + +ELFIVEGDSAGGSAKQ RNR NQAVLPLRGKILNV Sbjct: 412 GALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVER 471 Query: 502 AGSEKIRNNQQIMDLVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFY 560 A +++ + Q+ L+ ALG R +Y + LRY ++IIMTDADVDGAHI +LLLTFFY Sbjct: 472 ARFDRMLASDQVGTLITALGTGIGRDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFY 531 Query: 561 QEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHG 608 ++M +LIE+ ++++ PPL+R+ QG + +Y D+ L G Sbjct: 532 RQMPELIERGYVYIGLPPLYRLKQGKQELYLKDDNALNVYLASSAVEG 579 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 582 ITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLL 641 I +G K+ L E K G+ +I RFKGLGEM A QL ET ++ + R LL Sbjct: 723 IVRGNKTQAISSFAQAHAWLFEEAKKGR---QIQRFKGLGEMNAEQLWETTVNPDTRRLL 779 Query: 642 RVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDVG 685 +V I + + LMG + R FI+E A + ++ Sbjct: 780 QVRIEDAV----AADQIFSTLMGDVVEPRRDFIEENALKVANLD 819 >gi|208778992|ref|ZP_03246338.1| DNA gyrase, B subunit [Francisella novicida FTG] gi|208744792|gb|EDZ91090.1| DNA gyrase, B subunit [Francisella novicida FTG] Length = 803 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 346/576 (60%), Gaps = 19/576 (3%) Query: 39 SASDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLI 97 S + YD+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AGY + I Sbjct: 2 SENKAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGYCDDI 61 Query: 98 EVSLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGV 157 +V ++ +G ++V DNGRGIP + H K +S E+ILT LHAGGKFD+++Y++SGGLHGV Sbjct: 62 KVIINKDGSVSVSDNGRGIPTDIH-KEEGRSAAEVILTVLHAGGKFDDNSYKVSGGLHGV 120 Query: 158 GISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFG 217 G+SVVNALS++L +T+ R Q++ G+P PL++ +K GT ITF+P F Sbjct: 121 GVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKDTFS 179 Query: 218 DKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKL 277 FD L+K + ++L+ VK E F + GG+ +++ Sbjct: 180 -FVDFDYDILMKRIRELSFLNSGVKIELIDK-------INNRSEIFKYDGGIVAFVKYLN 231 Query: 278 ENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRV 336 ++ I + K VE A+ W