RPSBLAST alignment for GI: 254780222 and conserved domain: TIGR01058

>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 637
 Score =  473 bits (1219), Expect = e-134
 Identities = 259/651 (39%), Positives = 371/651 (56%), Gaps = 34/651 (5%)

Query: 41  SDNYDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVS 100
           +  Y+A +I+ILEGL+ VR RPGMYIG TD K LHHL  E++DN++DEV+AGYA+ I V+
Sbjct: 2   ASKYNADAIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVT 61

Query: 101 LDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
           L  +  +TV D+GRGIP   H +  N ST+E + T LHAGGKFD   Y+ +GGLHGVG S
Sbjct: 62  LHKDNSITVQDDGRGIPTGIH-QDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGAS 120

Query: 161 VVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKA 220
           VVNALS  L VTV R   I+ Q+F  G  +    KK     K GT + F PDP IF    
Sbjct: 121 VVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKIGTTKKTGTLVHFHPDPTIF-KTT 179

Query: 221 GFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENR 280
            F++  + +  +  A+L  ++K  ++ DK   +         F++  GL  ++    E +
Sbjct: 180 QFNSNIIKERLKESAFLLKKLKLTFT-DKRTNKTT------VFFYENGLVDFVDYINETK 232

Query: 281 SLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVAL 338
                E  +  T  +G   G  VE A  + + + E I S+ N++ T EGGTHE+G ++A+
Sbjct: 233 -----ETLSQVTYFEGEKNGIEVEVAFQFNDGDSENILSFANSVKTKEGGTHENGFKLAI 287

Query: 339 TRGIKKYAELTQ--NKRAISIISDDLMISAVGILSVFIREP--EFAGQTKTKLVSLDAQR 394
           T  I  YA       ++  ++   D+      I+SV I E   +F GQTK+KL S +A+ 
Sbjct: 288 TDVINSYARKYNLLKEKDKNLEGSDIREGLSAIISVRIPEELIQFEGQTKSKLFSPEARN 347

Query: 395 TVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRK---LRLPG 451
            V+  ++D    +L +N  +A  L++  I+  + +   +K RE  +     K     L G
Sbjct: 348 VVDEIVQDHLFFFLEENNNDAKLLIDKAIKARDAKEAAKKAREEKKSGKKPKKEKGILSG 407

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           KL           ELF+VEGDSAGGSAKQ R+R  QA+LPLRGK+LNV  A    I  N+
Sbjct: 408 KLTPAQSKNPAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAKLADILKNE 467

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
           +I  ++  +G    + +  +DL+Y+K+IIMTDAD DGAHI  LLLTFFY+ M  LIE  H
Sbjct: 468 EINTIIFCIGTGIGADFSIKDLKYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIELGH 527

Query: 572 LFLISPPLFRITQGT--KSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLK 629
           +++  PPL+++++    K  YA  +      LE  KK  K    + R+KGLGEM A QL 
Sbjct: 528 VYIALPPLYKLSKKDGKKVKYAWSDLE----LESVKKKLKN-YTLQRYKGLGEMNADQLW 582

Query: 630 ETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERASF 680
           ET M+   RTL+RV+I+    + +     IN LMG K + R K+I+   +F
Sbjct: 583 ETTMNPETRTLVRVKIDDLARAER----QINTLMGDKVEPRKKWIEANINF 629