>gnl|CDD|162180 TIGR01059, gyrB, DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB. Length = 654

Score = 631 bits (1629), Expect = 0.0 Identities = 297/662 (44%), Positives = 403/662 (60%), Gaps = 43/662 (6%) Query: 44 YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103 YDASSI++LEGLE VR RPGMYIG T E LHHL EV+DN++DE +AGY + I V+++ Sbjct: 1 YDASSIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND 60 Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163 +G +TV DNGRGIPV+ HP+ S +E++LT LHAGGKFD +Y++SGGLHGVG+SVVN Sbjct: 61 DGSVTVEDNGRGIPVDIHPE-EGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN 119 Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFD 223 ALS+ L VTV R I+ Q+F RGIPL PLE K GT + F PDP+IF + FD Sbjct: 120 ALSEWLEVTVFRDGKIYRQEFERGIPLGPLEV-VGETKKTGTTVRFWPDPEIF-ETTEFD 177 Query: 224 AARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLI 283 L K + A+L+ VK E+ G + F++ GG+K++++ N+ + Sbjct: 178 FDILAKRLRELAFLNSGVKISL-----EDERDGKGKSVTFHYEGGIKSFVKYLNRNKEPL 232 Query: 284 SSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVALTRGI 342 EI K EK+G VE A+ W + + I S+ N I T EGGTH G R ALTR I Sbjct: 233 HEEIIYIKGEKEGI---EVEVALQWNDGYSENILSFVNNINTREGGTHLEGFRSALTRVI 289 Query: 343 KKYAELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENAL 400 YA+ + + ++ +D+ ++SV + +P+F GQTKTKL + + + VE+ + Sbjct: 290 NSYAKNNKLLKESKPNLTGEDIREGLTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLV 349 Query: 401 RDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQRE-VNRKTAIRKLRLPGKLADCSQN 459 + + +NP EA ++E I ++ R RK RE RK+A+ LPGKLADCS Sbjct: 350 YEKLTEFFEENPQEAKAIVEKAILAAQAREAARKARELTRRKSALDSGGLPGKLADCSSK 409 Query: 460 IAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQA 519 +EL+IVEGDSAGGSAKQ R+R QA+LPLRGKILNV A +KI +NQ+I ++ A Sbjct: 410 DPSKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLDKILSNQEIGAIITA 469 Query: 520 LGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPL 579 LGC + E LRY K+IIMTDADVDG+HI +LLLTFFY+ M LIE ++++ PPL Sbjct: 470 LGCGIGKDFDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENGYVYIAQPPL 529 Query: 580 FRITQGTKSVYAHDEEHKQ-----------------KILEEFK-----KHGKGKIEISRF 617 +++ +G K Y D++ K+ K EE K G+ IEI R+ Sbjct: 530 YKVKKGKKERYIKDDKEKELVGEALEDLRALYIYSDKEKEEAKTQIPVHEGRKGIEIQRY 589 Query: 618 KGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI-NKLMGTKADERFKFIQE 676 KGLGEM A QL ET MD RTLL+V I +D D I + LMG + + R +FI+ Sbjct: 590 KGLGEMNADQLWETTMDPESRTLLKVTI-EDA----VEADRIFSTLMGDEVEPRREFIEA 644 Query: 677 RA 678 A Sbjct: 645 NA 646

RPSBLAST alignment for GI: 254780222 and conserved domain: TIGR01059