RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1bjt

>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793
 Score =  210 bits (534), Expect = 1e-54
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 15/239 (6%)

Query: 435 QREVNRKTAIRKLRLPG--KLADCSQNI---AHGTELFIVEGDSA-----GGSAKQARNR 484
           +  + +    RK R+    KL D ++      +   L + EGDSA      G A   R+ 
Sbjct: 1   ENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDY 60

Query: 485 SNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYRE-EDLRYEKVIIMTD 543
                 PLRGK+LNV  A +++I  N +I  + + +G + R +Y + + LRY  ++IMTD
Sbjct: 61  --YGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTD 118

Query: 544 ADVDGAHIASLLLTFFYQEMYDLIE-QKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
            D DG+HI  L++ F       L++ Q  L     P+ +++    +       +     +
Sbjct: 119 QDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEK 178

Query: 603 EFKKHG-KGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSIN 660
             ++   K   +   +KGLG  LA +++E   + ++   +   +  +     D   S  
Sbjct: 179 WREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKK 237