RPSBLAST alignment of GI: 254780222 and protein with PDBid: 1kij

>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390
 Score =  362 bits (929), Expect = e-100
 Identities = 150/399 (37%), Positives = 217/399 (54%), Gaps = 16/399 (4%)

Query: 44  YDASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDG 103
           YDAS+IR+L+GLE VR RP MYIGGT  +  HHLF E++DNA+DE +AGYA  I V L+ 
Sbjct: 3   YDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNE 62

Query: 104 NGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVN 163
           +G LTV DNGRGIPV+  P+   K  +E+I  TLH+GGKF+   Y++SGGLHGVG SVVN
Sbjct: 63  DGSLTVEDNGRGIPVDLMPE-EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN 121

Query: 164 ALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV-RNKRGTRITFRPDPKIFGDKAGF 222
           ALS+   V V R+       FSRG    PL    +  R K GTR+TF+PDP+IF     F
Sbjct: 122 ALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIF-GNLRF 180

Query: 223 DAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSL 282
           D +++    +  AYL   +K  +   +         ++E F   GG+ ++ +   E   L
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQH-------GKEEVFLDKGGVASFAKALAEGEDL 233

Query: 283 ISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRG 341
           +  + F  +          VE      +     I +Y N I T +GGTH +  + A +R 
Sbjct: 234 LYEKPFLIRGTH---GEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRA 290

Query: 342 IKKYAEL--TQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENA 399
           + +YA+      ++      DDL+     ++SV +  P+F GQTK KL++ +A   V   
Sbjct: 291 LNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQV 350

Query: 400 LRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
           + +     L +NP  A  + E  +  ++ R   RK RE+
Sbjct: 351 VYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389