Query gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs 130 out of 4487
Neff 9.4
Searched_HMMs 13730
Date Mon May 23 22:34:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780223.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kkxa_ a.4.3.1 (A:) Transcrip 9.1 32 0.0024 9.4 1.0 55 297-351 26-86 (102)
2 d1iwga8 f.35.1.1 (A:513-566,A: 6.3 52 0.0038 8.1 5.7 12 201-212 148-159 (222)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 5.8 58 0.0042 7.8 2.2 44 307-350 178-221 (234)
4 d2hyda2 f.37.1.1 (A:1-323) Put 5.1 69 0.005 7.3 23.5 11 43-53 36-46 (323)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 4.6 78 0.0057 7.0 8.3 27 219-245 46-72 (86)
6 d1j4na_ f.19.1.1 (A:) Aquapori 4.5 80 0.0059 6.9 2.1 26 326-351 212-237 (249)
7 d1dlca3 f.1.3.1 (A:61-289) del 4.2 87 0.0063 6.7 3.1 34 241-274 7-42 (229)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 4.2 88 0.0064 6.7 27.7 263 25-291 16-286 (319)
9 d1ciya3 f.1.3.1 (A:33-255) del 4.2 88 0.0064 6.7 4.7 53 239-295 3-56 (223)
10 d1g8ma1 c.24.1.3 (A:4-200) IMP 4.1 90 0.0066 6.6 0.8 15 297-311 55-70 (197)
No 1
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.09 E-value=32 Score=9.38 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=33.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 556651546888999999999999------9988979999999999999999999862003
Q gi|254780223|r 297 RPFLVGGPIKLPFLPTFFGLVGGV------RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351 (360)
Q Consensus 297 ~P~l~g~~~~l~p~~vllsi~~g~------~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~ 351 (360)
-|.+-|+.++++.+...+.-.+|- ..|.-+.--+|.|...-+...+..+...+++
T Consensus 26 ~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~lr~~Y~~~L~~yE~ 86 (102)
T d1kkxa_ 26 IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 86 (102)
T ss_dssp CCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEECCEEEEHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9839995400999999999976868862527599999997888589999999999999999
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.31 E-value=52 Score=8.08 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999888
Q gi|254780223|r 201 KKISRIVPKVIR 212 (360)
Q Consensus 201 ~~~~~~~~~~~~ 212 (360)
+...+..++..+
T Consensus 148 ~Ai~~a~~~~~~ 159 (222)
T d1iwga8 148 EATLDAVRMRLR 159 (222)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHHHHHH
T ss_conf 789999999743
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.82 E-value=58 Score=7.79 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88999999999999998897999999999999999999986200
Q gi|254780223|r 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350 (360)
Q Consensus 307 l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~ 350 (360)
+||.-.+-.-++++..-..|--++||.+-+.+-++..++....+
T Consensus 178 ~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~ 221 (234)
T d1ymga1 178 MNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 221 (234)
T ss_dssp CCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54032215878566866751000588899999999999987688
No 4
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=5.09 E-value=69 Score=7.33 Aligned_cols=11 Identities=9% Similarity=-0.157 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 99899999998
Q gi|254780223|r 43 TSWPIYSSFIS 53 (360)
Q Consensus 43 ll~p~~~~l~~ 53 (360)
+....+|....
T Consensus 36 l~~~~id~~~~ 46 (323)
T d2hyda2 36 LIKYAIDGVIN 46 (323)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999862
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=4.58 E-value=78 Score=6.97 Aligned_cols=27 Identities=15% Similarity=-0.025 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 999999999999987633998247999
Q gi|254780223|r 219 TIIAIGEGLVLGSAYWLAGVPSHVALG 245 (360)
Q Consensus 219 ~~~~~i~gi~~~i~~~i~Gvp~a~llg 245 (360)
..--.+..+...+.+..+|+|-..+.+
T Consensus 46 ~~~~~i~~i~~~~~L~~~Gi~~t~l~a 72 (86)
T d2vv5a3 46 LVRYGIIAFTLIAALGRVGVQTASVIA 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999999999990998899999
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.49 E-value=80 Score=6.90 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999999999999999862003
Q gi|254780223|r 326 LGLFIGPVLMALIAVIWKESIMAIKE 351 (360)
Q Consensus 326 ~G~ilg~p~~a~~~~i~~~~~~~~~~ 351 (360)
|=-.+||.+-+.+-.+..++..+.++
T Consensus 212 wvy~vgP~iGa~la~~~y~~~~~p~~ 237 (249)
T d1j4na_ 212 WIFWVGPFIGAALAVLIYDFILAPRS 237 (249)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 65432788999999999999337888
No 7
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=4.21 E-value=87 Score=6.69 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999883--11456999999999997288
Q gi|254780223|r 241 HVALGVITAIMAMI--PGGAPISFTAVSIYLLIKGN 274 (360)
Q Consensus 241 a~llgil~~i~~~I--P~~G~i~~~~~~~~~~~~~~ 274 (360)
....+++..+++++ |.+|+++.+...++-.+..+
T Consensus 7 ~~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~ 42 (229)
T d1dlca3 7 QKGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPS 42 (229)
T ss_dssp HHHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999999987557873788999999999880899
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.19 E-value=88 Score=6.66 Aligned_cols=263 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999899999998318880599999999999999999999999999999999999999999788
Q gi|254780223|r 25 YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104 (360)
Q Consensus 25 ~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (360)
+.+.-.+...+.+.+.....-.+.+.+.+..-.++.........+....+...-...............+.......+.
T Consensus 16 ~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~- 94 (319)
T d3b60a2 16 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRR- 94 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-
T ss_conf 9999999999999999999999999999987446877899999999999999764533546654434310001100047-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 89999985100001336666542224567666655665556778999999999999999986678999899752288989
Q gi|254780223|r 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184 (360)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 184 (360)
..+.+.+.+.............+...+................+......++........+..+.++.......-.--.
T Consensus 95 -~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~ 173 (319)
T d3b60a2 95 -LFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI 173 (319)
T ss_dssp -HHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf -7776501011110233322111112121210000111112001123344566888887652002102566899999988
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999500023157999999999988887899999999999999998--------763399824799999999988311
Q gi|254780223|r 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA--------YWLAGVPSHVALGVITAIMAMIPG 256 (360)
Q Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~--------~~i~Gvp~a~llgil~~i~~~IP~ 256 (360)
....++. ++..++..+..++..+.....+.|.-.+-....--...- ..-.........+......++++.
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (319)
T d3b60a2 174 RVVSKRF--RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251 (319)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 7666687--78789887644567788777624872353111010245666665313567788888777740640100000
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45699999999999728869999999999999997
Q gi|254780223|r 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291 (360)
Q Consensus 257 ~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~ 291 (360)
.+.......+.+....++.+.+-............
T Consensus 252 ~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~ 286 (319)
T d3b60a2 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALM 286 (319)
T ss_dssp HHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 02379999999999809978999999999999999
No 9
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=4.17 E-value=88 Score=6.65 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 82479999999998-8311456999999999997288699999999999999970245
Q gi|254780223|r 239 PSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295 (360)
Q Consensus 239 p~a~llgil~~i~~-~IP~~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~i 295 (360)
|--...+++.++++ ++|.+|.+.+ ++-.+.+..+...|--..--+-+.++..+
T Consensus 3 ~~~i~~~~~~~ll~~~iP~~g~~~~----li~~lwp~~~~~~W~~~~~~ve~LId~ki 56 (223)
T d1ciya3 3 PIDISLSLTQFLLSEFVPGAGFVLG----LVDIIWGIFGPSQWDAFLVQIEQLINQRI 56 (223)
T ss_dssp HHHHHHHHHHHHHHCCSSSHHHHHH----HHHHTTSCCSHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2144899999986604775577999----99997489996589999999999998988
No 10
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.09 E-value=90 Score=6.59 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=0.0
Q ss_pred EEEEECCCCC-CCHHH
Q ss_conf 5566515468-88999
Q gi|254780223|r 297 RPFLVGGPIK-LPFLP 311 (360)
Q Consensus 297 ~P~l~g~~~~-l~p~~ 311 (360)
.|-+++++++ +||-+
T Consensus 55 ~peil~GRVKTLhPkI 70 (197)
T d1g8ma1 55 FPEMLGGRVKTLHPAV 70 (197)
T ss_dssp CCCBGGGTBSSCSHHH
T ss_pred CHHHHHHHHHHCCCEE
T ss_conf 7789998985143104
Done!