RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
(360 letters)
>gnl|CDD|182881 PRK10983, PRK10983, putative inner membrane protein; Provisional.
Length = 368
Score = 52.7 bits (127), Expect = 2e-07
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
IR+ LG+ + A+ + ++ G ++GVP L V+ + ++ G I+L
Sbjct: 211 IRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLY 270
Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
G+ T L +W + + +D +RP L+ LP + G++GG+ G++GLFI
Sbjct: 271 WTGDTTWGTVLLVWSCV-VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFI 329
Query: 331 GPVLMA 336
GPV++A
Sbjct: 330 GPVVLA 335
>gnl|CDD|163054 TIGR02872, spore_ytvI, sporulation integral membrane protein YtvI.
Three lines of evidence show this protein to be involved
in sporulation. First, it is under control of a
sporulation-specific sigma factor, sigma-E. Second,
mutation leads to a sporulation defect. Third, it if
found in exactly those genomes whose bacteria are
capable of sporulation, except for being absent in
Clostridium acetobutylicum ATCC824. This protein has
extensive hydrophobic regions and is likely an integral
membrane protein.
Length = 341
Score = 43.4 bits (103), Expect = 9e-05
Identities = 70/345 (20%), Positives = 133/345 (38%), Gaps = 32/345 (9%)
Query: 13 RWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
R +++ ++ YF + P + ALI+ I + E+ +A
Sbjct: 1 RLILLIGLIAIFVLAIYFALPYSLPFVIALILAL----ILEPMVRFLEKKLKLPRALAVF 56
Query: 69 SVMCLFIVPLLFLFYYGMLEMKELVSKVVL--------ANQHGIPVPRWLSDIPGGMWAS 120
V+ +F+ + L Y + E+ + N H +P+ L G +
Sbjct: 57 IVLLIFLGIIGGLLYILVTELVTETIALAKNLPQYLNNINDHILPLIDDLESYYGSLPPG 116
Query: 121 ELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
+ +T + L+ L TN I IP F + + ++F +IA FF
Sbjct: 117 QQYTIVNNIQTLLEKLLNYVVSFATNLITSIPSFIASIPNFL----IVLLFTLIATFFIS 172
Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
+D +L S + P + + + ++ G I+ + +++
Sbjct: 173 KD----LPRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITFVIVLIGLL 228
Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
+ GV + L +I I+ ++P P + ++YL I GN L + + + I+
Sbjct: 229 IIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNYAMGIGLLILYLV-VLILR 287
Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
+ L P +V I L L T + G++ G LGL GPV++ L
Sbjct: 288 QILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVLF 332
>gnl|CDD|118258 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 30.3 bits (68), Expect = 0.79
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 21 LVSLYFLKGFFAPVLSALIIGFT---SWP-------IYSSFISKKEESSTFLAVIATVS- 69
+ + FL + +L+ I+ F WP +Y SF + S F IA S
Sbjct: 28 FLYIKFLLIWAFVLLADFILEFRFEYLWPFWLLIRSVYDSFKYQGLAFSVFFVCIAITSD 87
Query: 70 VMCLFIVPLLFLFY 83
+CL +P+ +LF+
Sbjct: 88 TICLLFIPVQWLFF 101
>gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase.
Length = 303
Score = 29.3 bits (65), Expect = 1.7
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 54 KKEESSTFL--AVIATVSVMCLFIVPLLFLFYYGM----LEMKELVSKVVLANQHGIPVP 107
KK E T+L AV+++ + + I+ + + F + M + M E+ L+ + +
Sbjct: 89 KKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGME 148
Query: 108 RWLSDIPGGMWASELWTKHLSH 129
W +W LW H SH
Sbjct: 149 FWARWAHRALWHDSLWNMHESH 170
>gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated.
Length = 584
Score = 28.6 bits (64), Expect = 2.7
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII-AIGEGLVLG--SAYWLAGVPSHVA 243
+ +SL +HL Y + SR + I + I + +LG +LA
Sbjct: 251 EKESLLQHLLDYY--EQSRQHFRFIALLLCSLACIPGAPKAPILGFSVLLFLAYKNPSSG 308
Query: 244 --LGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
L + P ++Y + IF + I + V+ P
Sbjct: 309 ETLLFQKERFEFVELALPDEGVGNPANLYRAAREEIFQELGVVFPEEIVVRHVES--SPR 366
Query: 300 LVGG 303
L+
Sbjct: 367 LIFS 370
>gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional.
Length = 238
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 239 PSHVALG-----VITAIMAMIPGGAPISFTA 264
P +LG VI I+A +PG P+S T
Sbjct: 29 PKEGSLGANFPWVIREIVAAVPGRKPVSATI 59
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 27.4 bits (61), Expect = 6.3
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 59 STFLAVIATVSVMCLF-IVPLLFLFY 83
STF +I VS + L+ I+PLL LFY
Sbjct: 1043 STF-VLIGIVSTISLWAIMPLLVLFY 1067
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 27.2 bits (61), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
G+++ A G GL Y L S V+ G ++A M M+
Sbjct: 315 GLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGML 352
>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 948
Score = 27.1 bits (61), Expect = 6.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 5 MLNPQGIMRWMIMFIILVSLY-FLKG 29
L P + R ++ +LVS+Y FL+G
Sbjct: 795 PLVPAVLARLLLPLALLVSVYLFLRG 820
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 26.9 bits (59), Expect = 8.2
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 59 STFLAVIATVSVMCLF-IVPLLFLFY 83
STF A+I TVS + L+ I+PLL LFY
Sbjct: 1040 STF-ALIGTVSTISLWAIMPLLILFY 1064
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.331 0.145 0.454
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,149,141
Number of extensions: 421442
Number of successful extensions: 1739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 123
Length of query: 360
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 265
Effective length of database: 3,941,713
Effective search space: 1044553945
Effective search space used: 1044553945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)