RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)



>3gzr_A Uncharacterized protein with A NTF2-like fold; NP_421374.1,
           domain of unknown function with A NTF2-like fold,
           structural genomics; HET: MSE GOL; 1.40A {Caulobacter
           vibrioides} (A:)
          Length = 146

 Score = 29.3 bits (65), Expect = 0.79
 Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 7/69 (10%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-------GVPSHVALGVIT 248
                    + + K  +   + +    I  G  L     +        G     A   +T
Sbjct: 51  IVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVTLIQDAYVTPDGRQXPRAHDRLT 110

Query: 249 AIMAMIPGG 257
            +     G 
Sbjct: 111 LLAVEREGV 119


>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria;
           HET: MSE; 1.90A {Prochlorococcus marinus str} (A:)
          Length = 334

 Score = 27.0 bits (59), Expect = 4.1
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM--- 218
           DY   I   I +      +GFS  + +    + +   + K+I +I+   + ST +     
Sbjct: 48  DYVKLIDKAIESSENTLPNGFSEIELIKETVDQVSVFFGKEILKIISGRV-STEVDARLS 106

Query: 219 --TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
             T   + +   L + Y   G+       ++  I A   G            L  +G   
Sbjct: 107 FDTEATVKKARKLINLYKNFGIEKER---ILIKIAATWEGIKAAE------ILEKEGIKC 157

Query: 277 NATCLF 282
           N T LF
Sbjct: 158 NLTLLF 163


>2j2z_B PAPH, PAP fimbrial minor pilin protein; chaperone/surface
           active protein, periplasmic, pilus termination,
           immunoglobulin domain, PAPD; 2.3A {Escherichia coli}
           (B:)
          Length = 173

 Score = 26.4 bits (57), Expect = 5.6
 Identities = 4/36 (11%), Positives = 6/36 (16%)

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           G        +P                 G +    C
Sbjct: 1   GPFPPPGMSLPEYWGEEHVWWDGRAAFHGEVVRPAC 36


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,744,005
Number of extensions: 122130
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 38
Length of query: 360
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 270
Effective length of database: 1,913,599
Effective search space: 516671730
Effective search space used: 516671730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.3 bits)