RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)



>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 151

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 17/77 (22%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  V   ++  +   +     I +        ++  +           I+L +V +   
Sbjct: 92  IPVVVPYSILFNLARDVGVDWDIDYE-------LQIGL----------TIDLPVVGEFTI 134

Query: 298 PFLVGGPIKLPFLPTFF 314
           P    G IKLP    FF
Sbjct: 135 PISSKGEIKLPTFKDFF 151


>d1agxa_ c.88.1.1 (A:) Glutaminase-asparaginase {Acinetobacter
           glutaminasificans [TaxId: 474]}
          Length = 331

 Score = 25.5 bits (55), Expect = 7.4
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+ S  E +       ++R V  +++   +   +I  G   +  +A++L  V       V
Sbjct: 56  QVAS--ESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLNLVVHTDKPIV 113

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLI 271
           +    +M P  A  +   +++Y  +
Sbjct: 114 LVG--SMRPSTALSADGPLNLYSAV 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,369,689
Number of extensions: 63959
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 20
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.9 bits)