Query gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 382
No_of_seqs 178 out of 252
Neff 6.5
Searched_HMMs 23785
Date Tue May 24 00:17:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780224.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lrv_A LRV, leucine-rich repea 98.5 9.1E-09 3.8E-13 70.6 -1.3 142 3-176 44-193 (244)
2 1lrv_A LRV, leucine-rich repea 98.1 3.9E-07 1.6E-11 60.5 0.7 92 47-148 56-147 (244)
3 3ltj_A Alpharep-4; protein eng 94.1 0.22 9.1E-06 25.2 9.2 106 2-116 15-126 (201)
4 3ltm_A Alpha-REP4; protein eng 91.6 0.5 2.1E-05 22.9 10.3 75 3-86 21-97 (211)
5 1te4_A Conserved protein MTH18 87.7 1 4.2E-05 21.0 6.4 55 4-67 45-99 (131)
6 1oyz_A Hypothetical protein YI 75.8 2.9 0.00012 18.2 7.4 57 3-68 25-81 (280)
7 1b3u_A Protein (protein phosph 64.3 5.1 0.00022 16.7 7.9 56 9-66 134-189 (588)
8 2db0_A 253AA long hypothetical 55.8 7.2 0.0003 15.8 11.0 57 44-118 35-91 (253)
9 3ke2_A Uncharacterized protein 53.8 6.4 0.00027 16.1 2.4 35 279-314 24-58 (117)
10 2qk2_A LP04448P; mini spindles 49.6 9 0.00038 15.2 9.1 62 4-65 18-81 (242)
11 3b7h_A Prophage LP1 protein 11 42.3 12 0.00049 14.5 5.1 41 266-306 23-67 (78)
12 1xm9_A Plakophilin 1; armadill 39.3 13 0.00055 14.2 9.4 67 2-68 3-71 (457)
13 2of3_A ZYG-9; multifunctional 36.1 15 0.00062 13.9 4.8 19 47-65 52-70 (266)
14 1xqr_A HSPBP1 protein; armadil 35.3 15 0.00063 13.8 11.9 21 253-273 214-234 (296)
15 1neq_A DNA-binding protein NER 32.2 17 0.00071 13.5 4.9 41 265-305 24-64 (74)
16 1b0n_A Protein (SINR protein); 25.6 22 0.00093 12.8 5.6 42 265-306 16-61 (111)
17 2eby_A Putative HTH-type trans 24.7 23 0.00097 12.7 7.9 73 246-318 7-82 (113)
18 3gs3_A Symplekin, LD45768P; he 22.6 25 0.0011 12.4 7.0 58 6-65 20-77 (257)
19 3hjl_A Flagellar motor switch 22.5 25 0.0011 12.4 15.1 226 49-313 30-282 (329)
20 3bz1_U Photosystem II 12 kDa e 21.9 22 0.00092 12.8 0.8 47 267-313 33-79 (104)
No 1
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.46 E-value=9.1e-09 Score=70.59 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHH--------HCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf 8999998--------41799789999999999996357899899999999999985196989999999982148789889
Q gi|254780224|r 3 VQSFIKW--------AKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALSDTAPKH 74 (382)
Q Consensus 3 v~~fl~~--------~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~~~aP~~ 74 (382)
|..|.+| ..+...+.|+.+++. .+ ...|..|++|+++.||..+|.+| |.+
T Consensus 44 i~rf~~~~p~la~~~l~~p~~evRa~aAr~---------a~-------~~~L~~Ll~D~d~~VR~~aA~~L------~~~ 101 (244)
T 1lrv_A 44 IDRFFRNNPHLAVQYLADPFWERRAIAVRY---------SP-------VEALTPLIRDSDEVVRRAVAYRL------PRE 101 (244)
T ss_dssp HHHHHHHCGGGGGGGTTCSSHHHHHHHHTT---------SC-------GGGGGGGTTCSSHHHHHHHHTTS------CSG
T ss_pred HHHHHHHCHHHHHHHCCCCCHHHHHHHHHH---------CC-------HHHHHHHHCCCCHHHHHHHHHHC------CHH
T ss_conf 999987599999987049979999999862---------99-------99999880697989999999978------999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 99987089778999999738589989999999549999999986299999899999984398999999860899846946
Q gi|254780224|r 75 VVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVVVENLIETGCVDNIVALLGNKSVFLSNS 154 (382)
Q Consensus 75 vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~ls~~V~~aLae~gd~~v~~~Ll~N~~A~is~~ 154 (382)
.+..|..|++.-++-.+..+ |+...|..++.+.++.+|.+++++ ++..+...+....+..|....+.|-+. .
T Consensus 102 ~L~~L~~D~d~~VR~~aa~~--L~~~~L~~Ll~D~d~~VR~aaa~~--~~~~~L~~l~~d~d~~VR~~aA~~l~~----~ 173 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADR--LPLEQLEQMAADRDYLVRAYVVQR--IPPGRLFRFMRDEDRQVRKLVAKRLPE----E 173 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH--SCTGGGGGGTTCSSHHHHHHHHHH--SCGGGGGGTTTCSCHHHHHHHHHHSCG----G
T ss_pred HHHHHHCCCCHHHHHHHHHH--CCHHHHHHHHCCCCHHHHHHHHHC--CCHHHHHHHHCCCCHHHHHHHHHHCCH----H
T ss_conf 99998249898899999982--999999988329988988887612--674899998729988899999860057----9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 7999999817898999998624
Q gi|254780224|r 155 LLMQIVERFCHDASIRNLLSLR 176 (382)
Q Consensus 155 ~l~~lv~ra~~~~~l~~~L~~R 176 (382)
.+..+. ...++.++...+.+
T Consensus 174 ~L~~l~--~D~d~~VR~~aa~~ 193 (244)
T 1lrv_A 174 SLGLMT--QDPEPEVRRIVASR 193 (244)
T ss_dssp GGGGST--TCSSHHHHHHHHHH
T ss_pred HHHHHH--CCCCHHHHHHHHHC
T ss_conf 999986--17978999999980
No 2
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=98.11 E-value=3.9e-07 Score=60.52 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=77.8
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHH
Q ss_conf 99851969899999999821487898899998708977899999973858998999999954999999998629999989
Q gi|254780224|r 47 MHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHV 126 (382)
Q Consensus 47 ~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~ls~~ 126 (382)
..+++||...||...| ..+|.+.+..|..|+++.++-....+ |+...|+.++.+.+..+|.+++.+ ++..
T Consensus 56 ~~~l~~p~~evRa~aA------r~a~~~~L~~Ll~D~d~~VR~~aA~~--L~~~~L~~L~~D~d~~VR~~aa~~--L~~~ 125 (244)
T 1lrv_A 56 VQYLADPFWERRAIAV------RYSPVEALTPLIRDSDEVVRRAVAYR--LPREQLSALMFDEDREVRITVADR--LPLE 125 (244)
T ss_dssp GGGTTCSSHHHHHHHH------TTSCGGGGGGGTTCSSHHHHHHHHTT--SCSGGGGGTTTCSCHHHHHHHHHH--SCTG
T ss_pred HHHCCCCCHHHHHHHH------HHCCHHHHHHHHCCCCHHHHHHHHHH--CCHHHHHHHHCCCCHHHHHHHHHH--CCHH
T ss_conf 9870499799999998------62999999988069798999999997--899999998249898899999982--9999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 9999984398999999860899
Q gi|254780224|r 127 VVENLIETGCVDNIVALLGNKS 148 (382)
Q Consensus 127 V~~aLae~gd~~v~~~Ll~N~~ 148 (382)
+...+..+.+..|...++.|..
T Consensus 126 ~L~~Ll~D~d~~VR~aaa~~~~ 147 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQRIP 147 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHHSC
T ss_pred HHHHHHCCCCHHHHHHHHHCCC
T ss_conf 9998832998898888761267
No 3
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.13 E-value=0.22 Score=25.15 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCCCHHHHHHH
Q ss_conf 5899999841799789999999999996357899899999999999985196989999999982148--78988999987
Q gi|254780224|r 2 SVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALS--DTAPKHVVLAL 79 (382)
Q Consensus 2 iv~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~--~~aP~~vi~~L 79 (382)
.|+.|++..++.++..|..++..|+..- + ..+-..|..++.|.++.||...+..|... +.+...+...+
T Consensus 15 ~i~~l~~~L~d~~~~vR~~A~~~L~~~~---~------~~ai~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~~~ 85 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIG---D------ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKAL 85 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHC---C------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCC---C------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999858999999999999998429---9------889999999985998899999999998525430368988641
Q ss_pred CCCCHHHHH---HHHHHCC-CCCHHHHHHHHHCCCHHHHHH
Q ss_conf 089778999---9997385-899899999995499999999
Q gi|254780224|r 80 SEDHPDVSG---TIILHSP-VLKDNDLVDLIGRGNKLTSIF 116 (382)
Q Consensus 80 A~D~~~vA~---pvL~~Sp-~L~d~dLv~ia~~~~~~~~~A 116 (382)
-.+...+.. ..|.... .-.-.-|+.+..+.++.++.+
T Consensus 86 ~~~~~~~~~~a~~~L~~~~~~~~i~~L~~~L~d~~~~vr~~ 126 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIA 126 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 01210788999999850486899999999871862889999
No 4
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.60 E-value=0.5 Score=22.91 Aligned_cols=75 Identities=24% Similarity=0.256 Sum_probs=48.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC--CCHHHHHHHC
Q ss_conf 89999984179978999999999999635789989999999999998519698999999998214878--9889999870
Q gi|254780224|r 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALSDT--APKHVVLALS 80 (382)
Q Consensus 3 v~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~~~--aP~~vi~~LA 80 (382)
|..+++..++.++..|..++..|++.-. ..+-..|..++.|.++.||......|..... +.+.++..+.
T Consensus 21 i~~L~~~L~d~~~~vR~~A~~~Lg~~~~---------~~a~~~L~~~L~d~d~~vr~~a~~~L~~~~~~~~~~~~~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK 91 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 9999998489999999999999984699---------8899999999849988899999999874265147776200013
Q ss_pred CCCHHH
Q ss_conf 897789
Q gi|254780224|r 81 EDHPDV 86 (382)
Q Consensus 81 ~D~~~v 86 (382)
.+...+
T Consensus 92 ~~~~~~ 97 (211)
T 3ltm_A 92 DEDGWV 97 (211)
T ss_dssp CSSHHH
T ss_pred CCCCHH
T ss_conf 542147
No 5
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=87.69 E-value=1 Score=21.02 Aligned_cols=55 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 9999984179978999999999999635789989999999999998519698999999998214
Q gi|254780224|r 4 QSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIAL 67 (382)
Q Consensus 4 ~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~ 67 (382)
..++++.++..+..|..++..|+... +. .+...|..++.|+++.||...++.|..
T Consensus 45 ~~L~~~l~d~~~~vR~~a~~aL~~~~------~~---~a~~~L~~~l~d~d~~VR~~a~~aL~~ 99 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ------DE---RAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC------SH---HHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCC------CH---HHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999973999999999999984136------88---888777411479839999999999998
No 6
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.80 E-value=2.9 Score=18.23 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 899999841799789999999999996357899899999999999985196989999999982148
Q gi|254780224|r 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALS 68 (382)
Q Consensus 3 v~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~ 68 (382)
..+++++.++..+..|..+++.|+..- + ..+-.+|..++.|.++.||...+..|...
T Consensus 25 ~~~L~~~L~d~~~~vR~~A~~~L~~~~-----~----~~~~~~l~~~l~d~~~~vR~~A~~aL~~~ 81 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-----G----QDAVRLAIEFCSDKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-----C----HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHC-----C----HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999998817999999999999998718-----8----66999999998299989999999999750
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=64.26 E-value=5.1 Score=16.67 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 8417997899999999999963578998999999999999851969899999999821
Q gi|254780224|r 9 WAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA 66 (382)
Q Consensus 9 ~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La 66 (382)
+........|..+..-+...| ...++.........+..+..|.++.||+..+..+.
T Consensus 134 l~~~~~~~~r~~a~~l~~~~~--~~~~~~~~~~l~~~~~~l~~d~~~~vR~~a~~~l~ 189 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCY--PRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHT--TTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 843844789999999999999--97089999999999998808998999999999879
No 8
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3}
Probab=55.78 E-value=7.2 Score=15.76 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999998519698999999998214878988999987089778999999738589989999999549999999986
Q gi|254780224|r 44 LAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVA 118 (382)
Q Consensus 44 ~iL~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA 118 (382)
..|..+++|.+..||......| ..+..+.++...|.+. .-+..+..+.+..++..++
T Consensus 35 ~~l~~~L~d~~~~vr~~al~~l-----------~~i~~~~~~~~~~~~~-------~l~~~l~~~~~~~vr~~a~ 91 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISII-----------MVIAKTREDLYEPMLK-------KLFSLLKKSEAIPLTQEIA 91 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHH-----------HHHHTTCGGGHHHHHH-------HHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHH-----------HHHHCCCCCCHHHHHH-------HHHHHHHCCCCHHHHHHHH
T ss_conf 9999997799899999999999-----------8875358421067788-------9999860398589999999
No 9
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=53.79 E-value=6.4 Score=16.08 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999997179917999999962999889999999999
Q gi|254780224|r 279 RVYSILSTGGFHVICALYELVGLSPEISEIFVEATM 314 (382)
Q Consensus 279 ~v~~ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~~ 314 (382)
.+.-++.+. ..-+..|.+.+|+|++|.+...+|+.
T Consensus 24 YlA~LId~~-~~nvp~L~~~TGmPRRT~QD~I~AL~ 58 (117)
T 3ke2_A 24 YLAHLMDDA-RHNLLSLGKLTGMPRRTLQDAIASFA 58 (117)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHCCCHHHHHHHHHTGG
T ss_pred HHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999628-98689999885896868999998610
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.64 E-value=9 Score=15.16 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=35.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999841799789999999999996357-89-9899999999999985196989999999982
Q gi|254780224|r 4 QSFIKWAKNAKLQERISIARILGRTWCME-EL-LDQEKDSLVLAMMHLLDDPSSRVRLSLARAI 65 (382)
Q Consensus 4 ~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~-~l-~~~er~~a~~iL~~L~~d~~~~vR~alA~~L 65 (382)
+.|.+-..+..=..|.++...|...+-.. .+ ...-......+...+.+|....|+......+
T Consensus 18 ~~l~~~L~s~~W~~R~~al~~l~~~~~~~~~~~~~~~~~l~~~L~~~l~~d~n~~v~~~a~~~l 81 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCL 81 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999673188699999999999999974834343259999999999875367299999999999
No 11
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.31 E-value=12 Score=14.46 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHC----CCCHHHHHHHHHCCCCHHHH
Q ss_conf 999999829998999999717----99179999999629998899
Q gi|254780224|r 266 SVILANIAEYSTDRVYSILST----GGFHVICALYELVGLSPEIS 306 (382)
Q Consensus 266 ~~aLA~lsgi~~~~v~~ll~d----~~~~~l~aL~~aaGLp~~~~ 306 (382)
...||..+|++..++.++..+ +.-.-+..+|+.-|++...|
T Consensus 23 ~~~LA~~~Gis~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l 67 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDF 67 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 999999889399999999869988968999999999989939999
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.33 E-value=13 Score=14.17 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH--HHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 5899999841799789999999999996357899899999--999999985196989999999982148
Q gi|254780224|r 2 SVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDS--LVLAMMHLLDDPSSRVRLSLARAIALS 68 (382)
Q Consensus 2 iv~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~--a~~iL~~L~~d~~~~vR~alA~~La~~ 68 (382)
.|..++++.++.+++.|..++..|.......+..-..... .-..|..|+.++++.||...+..|...
T Consensus 3 ~~p~lv~~L~~~~~~~~~~aa~~l~~l~~~~~~~~~~v~~~G~i~~Lv~lL~~~~~~v~~~a~~aL~~L 71 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL 71 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 889999882899989999999999999779989999999888899999987899989999999999999
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=36.13 E-value=15 Score=13.86 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=7.4
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q ss_conf 9985196989999999982
Q gi|254780224|r 47 MHLLDDPSSRVRLSLARAI 65 (382)
Q Consensus 47 ~~L~~d~~~~vR~alA~~L 65 (382)
...+.+.+..+|....+.|
T Consensus 52 ~~~l~s~d~k~R~~ai~~L 70 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSL 70 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHH
T ss_conf 9986388799999999999
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=35.34 E-value=15 Score=13.78 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=10.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999898199479999999982
Q gi|254780224|r 253 LIYAIMIGAIDFVSVILANIA 273 (382)
Q Consensus 253 llral~~G~~~~f~~aLA~ls 273 (382)
|+..+.+++...-+.++..+.
T Consensus 214 Lv~lL~s~d~~v~e~al~aL~ 234 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALC 234 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHH
T ss_conf 698806989899999999999
No 15
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=32.21 E-value=17 Score=13.47 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
Q ss_conf 99999998299989999997179917999999962999889
Q gi|254780224|r 265 VSVILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEI 305 (382)
Q Consensus 265 f~~aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~ 305 (382)
....|++-.|++..++...+..+-+.+=.++..+.|++...
T Consensus 24 sLa~lsr~~Gls~~tl~nal~rp~pkgEriIA~aLGv~P~e 64 (74)
T 1neq_A 24 SLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEV 64 (74)
T ss_dssp CHHHHHHHHSSCHHHHHHTTTSSCHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHHH
T ss_conf 69999999099889999988277807999999997859889
No 16
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=25.63 E-value=22 Score=12.76 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHC----CCCHHHHHHHHHCCCCHHHH
Q ss_conf 9999999829998999999717----99179999999629998899
Q gi|254780224|r 265 VSVILANIAEYSTDRVYSILST----GGFHVICALYELVGLSPEIS 306 (382)
Q Consensus 265 f~~aLA~lsgi~~~~v~~ll~d----~~~~~l~aL~~aaGLp~~~~ 306 (382)
.-..||..+|++..++.++..+ ++..-+..+|..-|++...|
T Consensus 16 tq~~lA~~~Gvs~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l 61 (111)
T 1b0n_A 16 SLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 (111)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999987849889999999879989999999999999989879998
No 17
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=24.69 E-value=23 Score=12.65 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCC---CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 899989999989819947999999998299989999997179---9179999999629998899999999999984
Q gi|254780224|r 246 GQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTG---GFHVICALYELVGLSPEISEIFVEATMIWRE 318 (382)
Q Consensus 246 g~Lt~~lllral~~G~~~~f~~aLA~lsgi~~~~v~~ll~d~---~~~~l~aL~~aaGLp~~~~~af~~A~~~~r~ 318 (382)
...+|+-++.--.--....-...||...|++..++..++... ..+-..-|++.-|.+...+--+...-+.|+.
T Consensus 7 ~P~hPGeiL~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL~~~fg~s~~~wl~lQ~~ydl~~a 82 (113)
T 2eby_A 7 KPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEV 82 (113)
T ss_dssp CCCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9958219999998876699999999996989999999993877899999999999989589999987999889999
No 18
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=22.56 E-value=25 Score=12.40 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=38.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999841799789999999999996357899899999999999985196989999999982
Q gi|254780224|r 6 FIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAI 65 (382)
Q Consensus 6 fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~L 65 (382)
.|.=++.++...+.+..+.+-..++..+.+--+ .+-+-+..+..|+++.||+.++.-+
T Consensus 20 ~ln~a~~~~~~~k~~~L~~v~e~ll~~dp~ll~--~~l~~iL~~~~D~~~~VRk~~i~~i 77 (257)
T 3gs3_A 20 WCNELVIASPSTKCELLAKVQETVLGSCAELAE--EFLESVLSLAHDSNMEVRKQVVAFV 77 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHGGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998865477069999999999999833814799--9999999872599768999999999
No 19
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=22.51 E-value=25 Score=12.39 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=108.2
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCC-HHH----------------HHHHHHCCCH
Q ss_conf 85196989999999982148789889999870897789999997385899-899----------------9999954999
Q gi|254780224|r 49 LLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLK-DND----------------LVDLIGRGNK 111 (382)
Q Consensus 49 L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~-d~d----------------Lv~ia~~~~~ 111 (382)
++.+-++.--..++...+.....|++.+.....+-..- +-..+.... ..+ +...+..++.
T Consensus 30 vlk~L~~~Ei~~l~~~m~~l~~v~~~~~~~Vl~eF~~~---~~~~~~~~~~~~~~~~~L~~~l~~~~a~~il~~i~~~~~ 106 (329)
T 3hjl_A 30 IVKELSEEELQKLFALAKDLESVPEEEIENIAEELLDE---IKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDA 106 (329)
T ss_dssp HHHHSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHH---HHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf 98679999999999999714899999999999999999---998763125789999999986087789999998734563
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999862999998999999843989999998608998469467999999817898999998624689989999999986
Q gi|254780224|r 112 LTSIFVASRHKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKARYLLMKSV 191 (382)
Q Consensus 112 ~~~~AIA~R~~ls~~V~~aLae~gd~~v~~~Ll~N~~A~is~~~l~~lv~ra~~~~~l~~~L~~R~dLp~~~~~~L~~~v 191 (382)
..-+..=.++++.....+...-.+.++..++.+ ||++....++...
T Consensus 107 --~~~~~~L~~~~~~~La~~L~~EhPQtiAliLs~--------------------------------L~~~~AA~VL~~L 152 (329)
T 3hjl_A 107 --EKILKEIEKVDSRILASLLKNEHPQTIALFLSQ--------------------------------LSPKKSAEIIQNL 152 (329)
T ss_dssp --HHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTT--------------------------------SCHHHHHHHHHTS
T ss_pred --CCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH--------------------------------CCHHHHHHHHHHC
T ss_conf --457899874998999999874781599999993--------------------------------8999999999869
Q ss_pred HHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 79999978521----58998999999998888786432015677346999999998658999899999898199479999
Q gi|254780224|r 192 CNVLSQSKIVQ----KSITFRRTQILFEESMRVGILEMISHVRDVQALRELVDLLHDDGQLTPALLIYAIMIGAIDFVSV 267 (382)
Q Consensus 192 s~~lr~~l~~r----~~l~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~lv~~L~~~g~Lt~~lllral~~G~~~~f~~ 267 (382)
+..++..++.| ..++++....+..--......-...........+..+.-|+.-..-+..-++..+...+-.+...
T Consensus 153 p~~~r~eVv~Ria~l~~v~~~~v~~le~~L~~~l~~~~~~~~~~~~G~~~~A~ILn~~~~~~~~~il~~l~~~d~~la~~ 232 (329)
T 3hjl_A 153 PEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEER 232 (329)
T ss_dssp CHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99889999999974479999999999999998873012100112440899999985377788999999998628999999
Q ss_pred ------HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf ------9999829998999999717991799999996299988999999999
Q gi|254780224|r 268 ------ILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEAT 313 (382)
Q Consensus 268 ------aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~ 313 (382)
.+..+..++...+..++..-...-+...+|-+ +..+...|+..+
T Consensus 233 Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~l~~ALkga--~~e~~~~il~nm 282 (329)
T 3hjl_A 233 IREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGA--PEDIKQKFLSNM 282 (329)
T ss_dssp HHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHTS--CHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHH
T ss_conf 99862388878427988999998729988999987679--999999999875
No 20
>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U*
Probab=21.88 E-value=22 Score=12.78 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999829998999999717991799999996299988999999999
Q gi|254780224|r 267 VILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEAT 313 (382)
Q Consensus 267 ~aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~ 313 (382)
..|..+.|+.+....+|+..+....+.=|.+-.|++...+..++.-+
T Consensus 33 ~eL~~lpGig~~~A~~Iv~~gpf~s~~dL~~V~Gig~~~~e~ik~yl 79 (104)
T 3bz1_U 33 AAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENL 79 (104)
T ss_dssp GGGGGSTTTTHHHHHHHHHSCCCSSGGGGGGCTTCCHHHHHHHHHHG
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99965899799999999974997989999638998999999999865
Done!