HHSEARCH alignment of GI: 254780224 and SCOP domain: d1lrva_

Alignment
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}
Probab=98.44  E-value=2.2e-08  Score=66.76  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf             99999851969899999999821487898899998708977899999973858998999999954999999998629999
Q gi|254780224|r   44 LAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKL  123 (382)
Q Consensus        44 ~iL~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~l  123 (382)
                      ..|..|++|+++.||...+.+|      |.+.+..|..|++..++..+..+  |+...|..++.+++..+|.+++++  +
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~L------p~~~L~~L~~D~d~~VR~~aa~~--l~~~~L~~Ll~D~d~~VR~~aa~~--~  138 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRL------PREQLSALMFDEDREVRITVADR--LPLEQLEQMAADRDYLVRAYVVQR--I  138 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTS------CSGGGGGTTTCSCHHHHHHHHHH--SCTGGGGGGTTCSSHHHHHHHHHH--S
T ss_pred             HHHHHHHCCCCHHHHHHHHHHC------CHHHHHHHHCCCCHHHHHHHHHC--CCHHHHHHHHCCCCHHHHHHHHHC--C
T ss_conf             9999882698989999999974------89999998449974689988742--688999998559987899999861--1


Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             98999999843989999998608998469467999999817898999998624
Q gi|254780224|r  124 SHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLR  176 (382)
Q Consensus       124 s~~V~~aLae~gd~~v~~~Ll~N~~A~is~~~l~~lv~ra~~~~~l~~~L~~R  176 (382)
                      +..+...++.+++..|...++.|.+..    .+..++  ...++.++...+.+
T Consensus       139 ~~~~L~~L~~D~d~~VR~~aA~~~~~~----~L~~l~--~D~d~~VR~~aa~~  185 (233)
T d1lrva_         139 PPGRLFRFMRDEDRQVRKLVAKRLPEE----SLGLMT--QDPEPEVRRIVASR  185 (233)
T ss_dssp             CGGGGGGTTTCSCHHHHHHHHHHSCGG----GGGGST--TCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHCCHH----HHHHHC--CCCCHHHHHHHHHH
T ss_conf             066899883489789999999845999----999870--59988999999984


SCOP domain information

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]