Query gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 382 No_of_seqs 178 out of 252 Neff 6.5 Searched_HMMs 13730 Date Mon May 23 21:23:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780224.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lrva_ a.118.1.5 (A:) Leucine 98.4 2.2E-08 1.6E-12 66.8 1.5 117 44-176 69-185 (233) 2 d1lrva_ a.118.1.5 (A:) Leucine 98.3 1.5E-07 1.1E-11 61.6 2.4 89 48-146 49-137 (233) 3 d1te4a_ a.118.1.16 (A:) MTH187 85.8 0.73 5.3E-05 20.4 7.0 55 4-67 25-79 (111) 4 d1oyza_ a.118.1.16 (A:) Hypoth 57.9 3.8 0.00028 16.0 10.6 58 3-69 21-78 (276) 5 d2vglb_ a.118.1.10 (B:) Adapti 56.3 4.1 0.0003 15.8 6.4 83 1-88 83-175 (579) 6 d1b3ua_ a.118.1.2 (A:) Constan 46.6 5.8 0.00042 14.9 8.5 111 6-118 131-263 (588) 7 d1nera_ a.35.1.2 (A:) Ner {Bac 31.2 10 0.00074 13.4 4.9 55 249-305 10-64 (74) 8 d1xm9a1 a.118.1.24 (A:244-700) 27.6 12 0.00086 13.0 11.8 66 2-67 3-70 (457) 9 d1mkma1 a.4.5.33 (A:1-75) Tran 27.1 12 0.00087 12.9 2.2 40 283-322 14-53 (75) 10 d2axtu1 a.60.12.2 (U:37-134) P 23.7 6.6 0.00048 14.5 -0.4 47 267-313 27-73 (98) No 1 >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Probab=98.44 E-value=2.2e-08 Score=66.76 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=88.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCC Q ss_conf 99999851969899999999821487898899998708977899999973858998999999954999999998629999 Q gi|254780224|r 44 LAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKL 123 (382) Q Consensus 44 ~iL~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~l 123 (382) ..|..|++|+++.||...+.+| |.+.+..|..|++..++..+..+ |+...|..++.+++..+|.+++++ + T Consensus 69 ~~L~~Ll~D~d~~VR~~AA~~L------p~~~L~~L~~D~d~~VR~~aa~~--l~~~~L~~Ll~D~d~~VR~~aa~~--~ 138 (233) T d1lrva_ 69 EALTPLIRDSDEVVRRAVAYRL------PREQLSALMFDEDREVRITVADR--LPLEQLEQMAADRDYLVRAYVVQR--I 138 (233) T ss_dssp GGGGGGTTCSSHHHHHHHHTTS------CSGGGGGTTTCSCHHHHHHHHHH--SCTGGGGGGTTCSSHHHHHHHHHH--S T ss_pred HHHHHHHCCCCHHHHHHHHHHC------CHHHHHHHHCCCCHHHHHHHHHC--CCHHHHHHHHCCCCHHHHHHHHHC--C T ss_conf 9999882698989999999974------89999998449974689988742--688999998559987899999861--1 Q ss_pred CHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 98999999843989999998608998469467999999817898999998624 Q gi|254780224|r 124 SHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLR 176 (382) Q Consensus 124 s~~V~~aLae~gd~~v~~~Ll~N~~A~is~~~l~~lv~ra~~~~~l~~~L~~R 176 (382) +..+...++.+++..|...++.|.+.. .+..++ ...++.++...+.+ T Consensus 139 ~~~~L~~L~~D~d~~VR~~aA~~~~~~----~L~~l~--~D~d~~VR~~aa~~ 185 (233) T d1lrva_ 139 PPGRLFRFMRDEDRQVRKLVAKRLPEE----SLGLMT--QDPEPEVRRIVASR 185 (233) T ss_dssp CGGGGGGTTTCSCHHHHHHHHHHSCGG----GGGGST--TCSSHHHHHHHHHH T ss_pred CHHHHHHHHCCCCHHHHHHHHHHCCHH----HHHHHC--CCCCHHHHHHHHHH T ss_conf 066899883489789999999845999----999870--59988999999984 No 2 >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Probab=98.26 E-value=1.5e-07 Score=61.58 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=60.7 Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHH Q ss_conf 98519698999999998214878988999987089778999999738589989999999549999999986299999899 Q gi|254780224|r 48 HLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVV 127 (382) Q Consensus 48 ~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~ls~~V 127 (382) .++.||...||...+ .++|..++..|..|+++.++-..... |+..-|..+..+.+..+|.+++.+ ++..+ T Consensus 49 ~~l~~p~~e~Ra~Aa------~~a~~~~L~~Ll~D~d~~VR~~AA~~--Lp~~~L~~L~~D~d~~VR~~aa~~--l~~~~ 118 (233) T d1lrva_ 49 QYLADPFWERRAIAV------RYSPVEALTPLIRDSDEVVRRAVAYR--LPREQLSALMFDEDREVRITVADR--LPLEQ 118 (233) T ss_dssp GGTTCSSHHHHHHHH------TTSCGGGGGGGTTCSSHHHHHHHHTT--SCSGGGGGTTTCSCHHHHHHHHHH--SCTGG T ss_pred HHHCCCCHHHHHHHH------HCCCHHHHHHHHCCCCHHHHHHHHHH--CCHHHHHHHHCCCCHHHHHHHHHC--CCHHH T ss_conf 885499699999987------01999999988269898999999997--489999998449974689988742--68899 Q ss_pred HHHHHHCCCHHHHHHHHHC Q ss_conf 9999843989999998608 Q gi|254780224|r 128 VENLIETGCVDNIVALLGN 146 (382) Q Consensus 128 ~~aLae~gd~~v~~~Ll~N 146 (382) ...+..+.+..|....+.| T Consensus 119 L~~Ll~D~d~~VR~~aa~~ 137 (233) T d1lrva_ 119 LEQMAADRDYLVRAYVVQR 137 (233) T ss_dssp GGGGTTCSSHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHC T ss_conf 9998559987899999861 No 3 >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=85.83 E-value=0.73 Score=20.40 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=22.9 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 9999984179978999999999999635789989999999999998519698999999998214 Q gi|254780224|r 4 QSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIAL 67 (382) Q Consensus 4 ~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~ 67 (382) ..+++..++..+..|..++..|+... . ..+...|..++.|.++.||...++.|.. T Consensus 25 ~~L~~~l~d~~~~vR~~a~~~L~~~~------~---~~~~~~L~~~l~d~~~~VR~~a~~aL~~ 79 (111) T d1te4a_ 25 EPLLESLSNEDWRIRGAAAWIIGNFQ------D---ERAVEPLIKLLEDDSGFVRSGAARSLEQ 79 (111) T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC------S---HHHHHHHHHHHHHCCTHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCC------H---HHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999974998789999999987610------1---2327998733023033799999999998 No 4 >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Probab=57.89 E-value=3.8 Score=15.98 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=39.6 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC Q ss_conf 8999998417997899999999999963578998999999999999851969899999999821487 Q gi|254780224|r 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALSD 69 (382) Q Consensus 3 v~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~~ 69 (382) ..++++..++..+..|..++..|... +. ..+-.+|..++.|+++.||...+..|.... T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~---~~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~ 78 (276) T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR---GG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 78 (276) T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH---CC------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 99999884699999999999999861---88------739999999980999899999999998720 No 5 >d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} Probab=56.29 E-value=4.1 Score=15.82 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=49.9 Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC----CCCC---- Q ss_conf 95899999841799789999999999996357899899999999999985196989999999982148----7898---- Q gi|254780224|r 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALS----DTAP---- 72 (382) Q Consensus 1 miv~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~----~~aP---- 72 (382) |+|+.|.+-.++..+..|+.+.+.++... .++-.......+..++.|+++.||+..+..+... |..- T Consensus 83 l~intl~kDl~d~n~~iR~lALr~L~~i~-----~~~i~~~l~~~l~~~L~D~~p~VRk~Aa~~l~kl~~~~p~~~~~~~ 157 (579) T d2vglb_ 83 MAVNSFVKDCEDPNPLIRALAVRTMGCIR-----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 157 (579) T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC-----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99999998869999999999999987489-----8889999999999987057689999999999988632814445665 Q ss_pred -HHHHHHHCCCCH-HHHH Q ss_conf -899998708977-8999 Q gi|254780224|r 73 -KHVVLALSEDHP-DVSG 88 (382) Q Consensus 73 -~~vi~~LA~D~~-~vA~ 88 (382) .+.+..+-.|.. .|.. T Consensus 158 ~~~~L~~lL~D~n~~V~~ 175 (579) T d2vglb_ 158 FLDSLRDLIADSNPMVVA 175 (579) T ss_dssp HHHHHHHTTSCSCHHHHH T ss_pred HHHHHHHHHCCCCHHHHH T ss_conf 789999987399928999 No 6 >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Probab=46.55 E-value=5.8 Score=14.86 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=56.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-CCCH--------HHH Q ss_conf 9998417997899999999999963578998999999999999851969899999999821487-8988--------999 Q gi|254780224|r 6 FIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALSD-TAPK--------HVV 76 (382) Q Consensus 6 fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~~-~aP~--------~vi 76 (382) +.++.+......|..+..-+...+ ...++.........+..|..|.++.||+..+..+...- ..+. .++ T Consensus 131 i~~L~~~~~~~~r~~a~~ll~~~~--~~~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l 208 (588) T d1b3ua_ 131 VKRLAGGDWFTSRTSACGLFSVCY--PRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208 (588) T ss_dssp HHHHHTCSSHHHHHHHGGGHHHHT--TTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 999864631479999999999999--986189999999999998516998999999999998998715787799999999 Q ss_pred HHHCCCCHH-HH---HHH-HHHCCCCCHH--------HHHHHHHCCCHHHHHHHH Q ss_conf 987089778-99---999-9738589989--------999999549999999986 Q gi|254780224|r 77 LALSEDHPD-VS---GTI-ILHSPVLKDN--------DLVDLIGRGNKLTSIFVA 118 (382) Q Consensus 77 ~~LA~D~~~-vA---~pv-L~~Sp~L~d~--------dLv~ia~~~~~~~~~AIA 118 (382) ..+..|+.+ |- ... ..-...+++. .+..+..+.+..+|.+++ T Consensus 209 ~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~ 263 (588) T d1b3ua_ 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263 (588) T ss_dssp HHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 9974488524678999888776305888999999999999720235688889999 No 7 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=31.22 E-value=10 Score=13.37 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=42.6 Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHH Q ss_conf 989999989819947999999998299989999997179917999999962999889 Q gi|254780224|r 249 TPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEI 305 (382) Q Consensus 249 t~~lllral~~G~~~~f~~aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~ 305 (382) .++-|.-+++-..+ ....|++-.|++..++...+..+-+.+=.++..+.|++... T Consensus 10 h~adI~AaL~krG~--sLa~lsr~~gls~stl~naL~rp~pKgEriIA~aLg~~P~e 64 (74) T d1nera_ 10 HRADVIAGLKKRKL--SLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEV 64 (74) T ss_dssp CHHHHHHHHTTSSC--CHHHHHHHHSCCHHHHHHTTTSSCHHHHHHHHHHTTSCHHH T ss_pred CHHHHHHHHHHCCC--CHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHH T ss_conf 99999999999688--79999999099878999998377858999999997859889 No 8 >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=27.62 E-value=12 Score=12.98 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=48.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 58999998417997899999999999963578998999999--9999998519698999999998214 Q gi|254780224|r 2 SVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSL--VLAMMHLLDDPSSRVRLSLARAIAL 67 (382) Q Consensus 2 iv~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a--~~iL~~L~~d~~~~vR~alA~~La~ 67 (382) .|..++++.+..+++.+..++..|.......+..-...... -..|..|+.++++.+|...+..|.. T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 70 (457) T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRN 70 (457) T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 78999998579999999999999999984999999999988859999998779998999999999999 No 9 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=27.07 E-value=12 Score=12.92 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=25.5 Q ss_pred HHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 9717991799999996299988999999999999840266 Q gi|254780224|r 283 ILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELAVG 322 (382) Q Consensus 283 ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~~~~r~~~~~ 322 (382) +-..+++-.+.-+.+..|+|..+.--+...+..+.=...+ T Consensus 14 ~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~ 53 (75) T d1mkma1 14 IVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 53 (75) T ss_dssp HHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC T ss_conf 9857999899999999791999999999999988998889 No 10 >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Probab=23.71 E-value=6.6 Score=14.51 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=39.4 Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999829998999999717991799999996299988999999999 Q gi|254780224|r 267 VILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEAT 313 (382) Q Consensus 267 ~aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~ 313 (382) ..|..+.|+.+..+.+|+..+....+.-|.+--|+...++..|+.-+ T Consensus 27 ~eL~~lpGIg~~~A~~Iv~~gpf~s~edL~~V~GIg~~~~e~lk~yl 73 (98) T d2axtu1 27 AAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENL 73 (98) T ss_dssp GGGTTSTTCTHHHHHHHHHSCCCSSGGGGGGCTTCCTTHHHHHHHHG T ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99987321269999999971882889999638899989999999987 Done!