RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] (382 letters) >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} (A:129-244) Length = 116 Score = 28.7 bits (64), Expect = 1.1 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKD-------SLVLAMMHLLDDP 53 + +S ++ + + R +A L +E L D + L + LD+P Sbjct: 42 LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEP 101 Query: 54 SSRVRLSLARAIALS 68 VRL++A + ++ Sbjct: 102 DPEVRLAIAGRLGIA 116 Score = 26.4 bits (58), Expect = 6.4 Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 5/38 (13%) Query: 49 LLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDV 86 + D VR + + I + + ++ V Sbjct: 2 MAADRDYLVRAYVVQRIPP-----GRLFRFMRDEDRQV 34 >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} (B:363-442) Length = 80 Score = 28.6 bits (64), Expect = 1.5 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60 + + KN + R + G L + ++ L+ DPS VR + Sbjct: 6 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 65 Query: 61 LARAI 65 A + Sbjct: 66 AAWTV 70 >2z5k_A Transportin-1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* 2h4m_A 2ot8_A (A:395-515) Length = 121 Score = 28.5 bits (63), Expect = 1.5 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60 + I+ + K R L R W + + D L+ ++ + D + RV+ + Sbjct: 46 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 105 Query: 61 LARAIA-LSDTAPKH 74 A A L + A Sbjct: 106 ACSAFATLEEEACTE 120 >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} (A:) Length = 131 Score = 27.5 bits (60), Expect = 3.0 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 21 IARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-LSDTAPKHVVLAL 79 + S ++ + D + VR ++ A++ + D A + ++ +L Sbjct: 1 MGSSHHHH---------HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESL 51 Query: 80 SEDHPD 85 S + Sbjct: 52 SNEDWR 57 >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, microtubule plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} (A:131-242) Length = 112 Score = 27.3 bits (60), Expect = 3.9 Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 2/64 (3%) Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60 S +K R S A LG ++ + + + + + + Sbjct: 48 TTSLVKTLNEPDPTVRDSSAEALGTLIKLXGDKAVTPLLADVDPLKXAKIKECQEKAEIK 107 Query: 61 LARA 64 + A Sbjct: 108 IKVA 111 Score = 26.9 bits (59), Expect = 4.7 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEE-LLDQEKDSLVLAMMHLLDDPSSRVRL 59 +S ++ N + A + R T L + L +++ L++P VR Sbjct: 5 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 64 Query: 60 SLARAIA 66 S A A+ Sbjct: 65 SSAEALG 71 >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} (A:207-398) Length = 192 Score = 26.9 bits (58), Expect = 3.9 Identities = 6/61 (9%), Positives = 15/61 (24%), Gaps = 2/61 (3%) Query: 6 FIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAI 65 + + + L D ++ + + +P R R + A Sbjct: 127 QDENDDDDDWNPCKAAGVCLML--LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF 184 Query: 66 A 66 Sbjct: 185 G 185 Score = 26.2 bits (56), Expect = 6.8 Identities = 5/47 (10%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Query: 36 DQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-LSDTAPKHVVLALSE 81 + E+ ++ + P +RVR++ + + + +++ + Sbjct: 6 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP 52 >2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2, MAD, structural genomics, protein structure initiative; 1.70A {Streptococcus pneumoniae TIGR4} (A:) Length = 117 Score = 27.1 bits (60), Expect = 4.0 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%) Query: 270 ANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELAVGSTVMEPG 329 A EY D V + +ST + I ++ + G P + E + E+ Sbjct: 26 AESGEYGLDVVCASVSTLAINFINSIEKFAGYEPILELNEDEGGYLMVEIPKDLP-SHQR 84 Query: 330 IIAEKLLERM 339 + + E Sbjct: 85 EMTQLFFESF 94 >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} (A:190-286) Length = 97 Score = 26.8 bits (59), Expect = 4.4 Identities = 6/35 (17%), Positives = 12/35 (34%) Query: 140 IVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLS 174 + GNK + + + C ++ L S Sbjct: 14 FKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCS 48 >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} (B:89-271) Length = 183 Score = 27.0 bits (58), Expect = 4.4 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%) Query: 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60 ++ + +I I L D+E S+ + L +S V LS Sbjct: 114 QNINKLLTALNECTEWGQIFILDCLSN---YNPKDDREAQSICERVTPRLSHANSAVVLS 170 Query: 61 LARAIA 66 + + Sbjct: 171 AVKVLM 176 >3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP} (A:276-472) Length = 197 Score = 27.0 bits (60), Expect = 4.5 Identities = 6/30 (20%), Positives = 15/30 (50%) Query: 60 SLARAIALSDTAPKHVVLALSEDHPDVSGT 89 S+ +A+ ++ T+ + + L D +G Sbjct: 5 SVDKALEIARTSRQLLALGDQGDRVXGAGP 34 >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} (A:158-222) Length = 65 Score = 26.9 bits (60), Expect = 4.8 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 43 VLAMMHLLDDPSSRVRLSLARAIA----LSDTAPKHVVLALSEDHPDV 86 + +++LL DP+ VR A AI + V L + + +V Sbjct: 4 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEXLQDKNEEV 51 >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, microtubule plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} (A:1-130) Length = 130 Score = 26.1 bits (57), Expect = 6.9 Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 1/50 (2%) Query: 18 RISIARILGRTW-CMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA 66 + L + + + V +++ + V +L AI Sbjct: 74 VAXAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123 >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} (A:1-165) Length = 165 Score = 26.3 bits (57), Expect = 7.4 Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 6/76 (7%) Query: 3 VQSFIKWAKNAKLQERISIARILGR-----TWCMEELLDQEKDSLVLAMMHLLDDPSSRV 57 ++ I + + + +E + V ++ + + Sbjct: 89 LKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNM 148 Query: 58 RLSLARAI-ALSDTAP 72 R S+ + LSD Sbjct: 149 RTSVRDIVNVLSDVVG 164 >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:1-117) Length = 117 Score = 25.8 bits (56), Expect = 9.2 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 1/64 (1%) Query: 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLA 62 + F+ + + +++A LG + + L+ + L + VR Sbjct: 50 LLPFLTDTIYDEDEVLLALAEQLGT-FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAV 108 Query: 63 RAIA 66 ++ Sbjct: 109 ESLR 112 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:83-184) Length = 102 Score = 25.9 bits (57), Expect = 9.2 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%) Query: 28 TWCMEELLDQ---EKDSLVLAMMHLLDDPSSRVRLSLARAIA 66 +W + LL Q +D +L +L DD R L+ A Sbjct: 10 SWKLMTLLPQLLEREDFTLLRH-YLTDDSDKRKLFQLSSKAA 50 >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:478-588) Length = 111 Score = 25.8 bits (56), Expect = 9.7 Identities = 7/79 (8%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60 + + + + R++ + C +++ + ++ ++ + DP + VR + Sbjct: 5 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH---MLPTVLRMAGDPVANVRFN 61 Query: 61 LARAIA-LSDTAPKHVVLA 78 +A+++ + + + Sbjct: 62 VAKSLQKIGPILDNSTLQS 80 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.137 0.379 Gapped Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,716,926 Number of extensions: 120147 Number of successful extensions: 623 Number of sequences better than 10.0: 1 Number of HSP's gapped: 619 Number of HSP's successfully gapped: 86 Length of query: 382 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 292 Effective length of database: 1,913,599 Effective search space: 558770908 Effective search space used: 558770908 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.2 bits)