RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780224|ref|YP_003064637.1| hypothetical protein
CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62]
(382 letters)
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats,
repetitive structure, iron sulfur proteins, nitrogen
fixation; 2.60A {Azotobacter vinelandii} (A:129-244)
Length = 116
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKD-------SLVLAMMHLLDDP 53
+ +S ++ + + R +A L +E L D + L + LD+P
Sbjct: 42 LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEP 101
Query: 54 SSRVRLSLARAIALS 68
VRL++A + ++
Sbjct: 102 DPEVRLAIAGRLGIA 116
Score = 26.4 bits (58), Expect = 6.4
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 49 LLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDV 86
+ D VR + + I + + ++ V
Sbjct: 2 MAADRDYLVRAYVVQRIPP-----GRLFRFMRDEDRQV 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small
GTPase, nuclear transport receptor, cell cycle,
translation; HET: GNP; 2.30A {Homo sapiens} (B:363-442)
Length = 80
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
+ + KN + R + G L + ++ L+ DPS VR +
Sbjct: 6 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 65
Query: 61 LARAI 65
A +
Sbjct: 66 AAWTV 70
>2z5k_A Transportin-1; nuclear transport, importin, exportin,
karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo
sapiens} PDB: 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
2h4m_A 2ot8_A (A:395-515)
Length = 121
Score = 28.5 bits (63), Expect = 1.5
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
+ I+ + K R L R W + + D L+ ++ + D + RV+ +
Sbjct: 46 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 105
Query: 61 LARAIA-LSDTAPKH 74
A A L + A
Sbjct: 106 ACSAFATLEEEACTE 120
>1te4_A Conserved protein MTH187; methanobacterium
thermoautotrophicum, structural proteomics, heat-like
repeat; NMR {Methanothermobacterthermautotrophicus}
(A:)
Length = 131
Score = 27.5 bits (60), Expect = 3.0
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 21 IARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-LSDTAPKHVVLAL 79
+ S ++ + D + VR ++ A++ + D A + ++ +L
Sbjct: 1 MGSSHHHH---------HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESL 51
Query: 80 SEDHPD 85
S +
Sbjct: 52 SNEDWR 57
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat
repeat, microtubule plus END, +TIP, protein binding;
2.10A {Drosophila melanogaster} (A:131-242)
Length = 112
Score = 27.3 bits (60), Expect = 3.9
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
S +K R S A LG ++ + + + + + +
Sbjct: 48 TTSLVKTLNEPDPTVRDSSAEALGTLIKLXGDKAVTPLLADVDPLKXAKIKECQEKAEIK 107
Query: 61 LARA 64
+ A
Sbjct: 108 IKVA 111
Score = 26.9 bits (59), Expect = 4.7
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEE-LLDQEKDSLVLAMMHLLDDPSSRVRL 59
+S ++ N + A + R T L + L +++ L++P VR
Sbjct: 5 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 64
Query: 60 SLARAIA 66
S A A+
Sbjct: 65 SSAEALG 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
(A:207-398)
Length = 192
Score = 26.9 bits (58), Expect = 3.9
Identities = 6/61 (9%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 6 FIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAI 65
+ + + L D ++ + + +P R R + A
Sbjct: 127 QDENDDDDDWNPCKAAGVCLML--LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF 184
Query: 66 A 66
Sbjct: 185 G 185
Score = 26.2 bits (56), Expect = 6.8
Identities = 5/47 (10%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 36 DQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-LSDTAPKHVVLALSE 81
+ E+ ++ + P +RVR++ + + + +++ +
Sbjct: 6 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP 52
>2idl_A Hypothetical protein; conserved hypothetical, MCSG, PSI2,
MAD, structural genomics, protein structure initiative;
1.70A {Streptococcus pneumoniae TIGR4} (A:)
Length = 117
Score = 27.1 bits (60), Expect = 4.0
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 270 ANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELAVGSTVMEPG 329
A EY D V + +ST + I ++ + G P + E + E+
Sbjct: 26 AESGEYGLDVVCASVSTLAINFINSIEKFAGYEPILELNEDEGGYLMVEIPKDLP-SHQR 84
Query: 330 IIAEKLLERM 339
+ + E
Sbjct: 85 EMTQLFFESF 94
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold;
HET: NAG BOG C11; 2.70A {Canis lupus familiaris}
(A:190-286)
Length = 97
Score = 26.8 bits (59), Expect = 4.4
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 140 IVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLS 174
+ GNK + + + C ++ L S
Sbjct: 14 FKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCS 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Homo sapiens} (B:89-271)
Length = 183
Score = 27.0 bits (58), Expect = 4.4
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
++ + +I I L D+E S+ + L +S V LS
Sbjct: 114 QNINKLLTALNECTEWGQIFILDCLSN---YNPKDDREAQSICERVTPRLSHANSAVVLS 170
Query: 61 LARAIA 66
+ +
Sbjct: 171 AVKVLM 176
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1,
structural genomics, joint center for structural
genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP}
(A:276-472)
Length = 197
Score = 27.0 bits (60), Expect = 4.5
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 60 SLARAIALSDTAPKHVVLALSEDHPDVSGT 89
S+ +A+ ++ T+ + + L D +G
Sbjct: 5 SVDKALEIARTSRQLLALGDQGDRVXGAGP 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Escherichia coli}
(A:158-222)
Length = 65
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 43 VLAMMHLLDDPSSRVRLSLARAIA----LSDTAPKHVVLALSEDHPDV 86
+ +++LL DP+ VR A AI + V L + + +V
Sbjct: 4 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEXLQDKNEEV 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat
repeat, microtubule plus END, +TIP, protein binding;
2.10A {Drosophila melanogaster} (A:1-130)
Length = 130
Score = 26.1 bits (57), Expect = 6.9
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 18 RISIARILGRTW-CMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA 66
+ L + + + V +++ + V +L AI
Sbjct: 74 VAXAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore,
microtubule, XMAP215, STU2, DIS1, microtubule associated
protein, structural protein; 1.90A {Caenorhabditis
elegans} (A:1-165)
Length = 165
Score = 26.3 bits (57), Expect = 7.4
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR-----TWCMEELLDQEKDSLVLAMMHLLDDPSSRV 57
++ I + + + +E + V ++ + +
Sbjct: 89 LKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNM 148
Query: 58 RLSLARAI-ALSDTAP 72
R S+ + LSD
Sbjct: 149 RTSVRDIVNVLSDVVG 164
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens}
(A:1-117)
Length = 117
Score = 25.8 bits (56), Expect = 9.2
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLA 62
+ F+ + + +++A LG + + L+ + L + VR
Sbjct: 50 LLPFLTDTIYDEDEVLLALAEQLGT-FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAV 108
Query: 63 RAIA 66
++
Sbjct: 109 ESLR 112
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
helicase, hydrolase, DNA repair; HET: DNA; 3.1A
{Escherichia coli} (C:83-184)
Length = 102
Score = 25.9 bits (57), Expect = 9.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 28 TWCMEELLDQ---EKDSLVLAMMHLLDDPSSRVRLSLARAIA 66
+W + LL Q +D +L +L DD R L+ A
Sbjct: 10 SWKLMTLLPQLLEREDFTLLRH-YLTDDSDKRKLFQLSSKAA 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens}
(A:478-588)
Length = 111
Score = 25.8 bits (56), Expect = 9.7
Identities = 7/79 (8%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 3 VQSFIKWAKNAKLQERISIARILGR--TWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
+ + + + R++ + C +++ + ++ ++ + DP + VR +
Sbjct: 5 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH---MLPTVLRMAGDPVANVRFN 61
Query: 61 LARAIA-LSDTAPKHVVLA 78
+A+++ + + +
Sbjct: 62 VAKSLQKIGPILDNSTLQS 80
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.137 0.379
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,716,926
Number of extensions: 120147
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 86
Length of query: 382
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 292
Effective length of database: 1,913,599
Effective search space: 558770908
Effective search space used: 558770908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.2 bits)