BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780224|ref|YP_003064637.1| hypothetical protein
CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62]
         (382 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/382 (100%), Positives = 382/382 (100%)

Query: 1   MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
           MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS
Sbjct: 1   MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60

Query: 61  LARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASR 120
           LARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASR
Sbjct: 61  LARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASR 120

Query: 121 HKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLS 180
           HKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLS
Sbjct: 121 HKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLS 180

Query: 181 LKARYLLMKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVD 240
           LKARYLLMKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVD
Sbjct: 181 LKARYLLMKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVD 240

Query: 241 LLHDDGQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVG 300
           LLHDDGQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVG
Sbjct: 241 LLHDDGQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVG 300

Query: 301 LSPEISEIFVEATMIWRELAVGSTVMEPGIIAEKLLERMRKRNISGLPAGELLEMVERIY 360
           LSPEISEIFVEATMIWRELAVGSTVMEPGIIAEKLLERMRKRNISGLPAGELLEMVERIY
Sbjct: 301 LSPEISEIFVEATMIWRELAVGSTVMEPGIIAEKLLERMRKRNISGLPAGELLEMVERIY 360

Query: 361 LDVNRRFVRSMATRSSRLIAAA 382
           LDVNRRFVRSMATRSSRLIAAA
Sbjct: 361 LDVNRRFVRSMATRSSRLIAAA 382


>gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
          Length = 189

 Score = 28.5 bits (62), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 57  VRLSLARAIALSDTAPKHVVLALSEDHPDVSGTIIL--HSPVLKDNDL 102
           V+L +   +ALS   P+HVV  + +  P   G  +   + P +  ND+
Sbjct: 113 VKLLIHEGVALSVEVPRHVVFTVIDTEPSSKGQTVTASYKPAILSNDI 160


>gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 199

 Score = 24.3 bits (51), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 188 MKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALREL 238
           +++VC VL    +V KSI       +   +  V  L   SH RDV   R +
Sbjct: 123 IRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEV--LRSQSHPRDVANRRGI 171


>gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 23.9 bits (50), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 52  DPSSRVRLSLARAIALSDTAPKHVVLALS--EDHPDVSGTIILHSPVLKDNDLVDLIG 107
           D + ++++S  ++  L  T  K     +S  +D P+    +I + P LKD  +  L+G
Sbjct: 71  DKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVG 128


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 23.1 bits (48), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 304 EISEIFVEATMIWRELAVGSTVMEPGIIAEKLLERMRKR 342
           EI+++ ++   IW E        +   I+E +L+ ++KR
Sbjct: 445 EIADMSIKKAQIWFEQLPTQITQKANKISESILKEIQKR 483


>gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 284

 Score = 23.1 bits (48), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 129 ENLIETGCVDNIVALLGN 146
           EN  +TG +D+IV+ +GN
Sbjct: 99  ENRSKTGLIDSIVSAVGN 116


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.137    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,230
Number of Sequences: 1233
Number of extensions: 8819
Number of successful extensions: 28
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 10
length of query: 382
length of database: 328,796
effective HSP length: 76
effective length of query: 306
effective length of database: 235,088
effective search space: 71936928
effective search space used: 71936928
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 39 (19.6 bits)