HHsearch alignment for GI: 254780225 and conserved domain: TIGR00447
>TIGR00447 pth peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis , . Bacterial PTH has been found to be evolutionary related to a yeast protein .; GO: 0004045 aminoacyl-tRNA hydrolase activity, 0006412 translation.
Probab=100.00 E-value=0 Score=466.91 Aligned_cols=185 Identities=43% Similarity=0.736 Sum_probs=176.4
Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-CC--CCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHH
Q ss_conf 98999858787366067410489999999998279854-44--3212788514797489998233402003379999994
Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW-KK--KFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMN 77 (189)
Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~-~~--k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~ 77 (189)
T Consensus 1 ~~LivGLGNPg~~Y~~TRHN~Gf~~lD~L~~~~~~~l~~~~Pv~f~G~~~~~l~~~~~v~L~kP~TYMNlSG~~V~~~~~ 80 (193)
T TIGR00447 1 MKLIVGLGNPGKKYAETRHNAGFMVLDRLASRLGLSLRTEKPVKFLGKTERGLISGKKVILLKPLTYMNLSGEAVKALAD 80 (193)
T ss_pred CEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 90688505885201046340368899999998388745368866788602376514258974697410011789999998
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCEEEECCCCCC-CCCHHHHHHHCC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 057566333489840443233823661115888-731033333106-87-313667506898776702424378988899
Q gi|254780225|r 78 FYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDA-GHNGLKSISEKC-GK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPE 154 (189)
Q Consensus 78 ~~~i~~~~~ilVihDdldL~~G~irlk~~Gg~g-GHNGlksI~~~l-g~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E 154 (189)
T Consensus 81 ~y~~~-~~~~lVvhDeLdLPlG~~rLk~~G~~grgHNGlKS~~~~LGg~~~F~RLRiGIg~~~~~~~~~~~VLs~F~~~E 159 (193)
T TIGR00447 81 FYKIK-PAELLVVHDELDLPLGKVRLKQGGGAGRGHNGLKSIISHLGGTSNFNRLRIGIGSPNGSNKVIEFVLSKFSKSE 159 (193)
T ss_pred HHCCC-CCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf 62678-34257888525689674776168889987433788998747889865357873568875113234438877114
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHC
Q ss_conf 9999999999999999998099--8999998633
Q gi|254780225|r 155 RYFLLPIIDNIARSLPLLAKRE--DVSFLNHIVS 186 (189)
Q Consensus 155 ~~~i~~~i~~~~~~i~~~~~~~--~~~~mn~~n~ 186 (189)
T Consensus 160 ~~~~E~a~d~a~~~~~~~~~eg~~~~~~~~~~~~ 193 (193)
T TIGR00447 160 LPLLEKALDKATEALKMSFSEGADFLKAMNRFNS 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 5689999889999999871186899999998519