HHsearch alignment for GI: 254780225 and conserved domain: cd02406
>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast. CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).
Probab=100.00 E-value=0 Score=483.38 Aligned_cols=187 Identities=36% Similarity=0.597 Sum_probs=182.1
Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC
Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575
Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189)
Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189)
T Consensus 3 ~LIvGLGNPG~~Y~~TRHNiGf~vld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~ki 82 (191)
T cd02406 3 WLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYKV 82 (191)
T ss_pred EEEEEECCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEEECCCHHHCCCHHHHHHHHHCCC
T ss_conf 79998089980005495089999999999961989674443757899998998999983870465438879999985689
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 66333489840443233823661115888731033333106-87-31366750689877670242437898889999999
Q gi|254780225|r 82 PNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKC-GK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLL 159 (189)
Q Consensus 82 ~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~l-g~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~ 159 (189)
T Consensus 83 ~-~~~ilVihDDldlp~G~irik~~Gs~gGHNGlkSIi~~L~gt~~f~RlRiGIG~p~~~~~~~~yVL~~F~~~E~~~l~ 161 (191)
T cd02406 83 P-LRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQID 161 (191)
T ss_pred C-HHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHH
T ss_conf 8-789899960367877871012599899989899999981799982789986189988887545426999999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 999999999999980998999998633589
Q gi|254780225|r 160 PIIDNIARSLPLLAKREDVSFLNHIVSVRK 189 (189)
Q Consensus 160 ~~i~~~~~~i~~~~~~~~~~~mn~~n~~~k 189 (189)
T Consensus 162 ~~i~~a~~ai~~~~~~g~~~amn~~N~~~k 191 (191)
T cd02406 162 TALEQGVDAVRTLVLKGFNGSAERFNLVQK 191 (191)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
T ss_conf 999999999999998599999998626589