Query gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 189 No_of_seqs 138 out of 2149 Neff 6.3 Searched_HMMs 33803 Date Mon May 23 19:50:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780225.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2pth_A Peptidyl-tRNA hydrolas 100.0 0 0 471.8 18.4 188 1-189 2-192 (193) 2 >1ryb_A CRS2; alpha-beta, hydr 100.0 0 0 472.9 17.1 187 1-188 17-205 (205) 3 >2z2i_A PTH, peptidyl-tRNA hyd 100.0 0 0 470.6 17.6 186 1-187 4-191 (191) 4 >1cfz_A Hydrogenase 2 maturati 52.0 18 0.00053 17.2 4.0 102 2-133 3-119 (162) 5 >2e85_A Hydrogenase 3 maturati 51.1 15 0.00044 17.7 3.1 101 2-133 6-116 (159) 6 >2inw_A Putative structural pr 47.7 21 0.00062 16.8 3.8 31 146-176 50-80 (133) 7 >2jy9_A Putative tRNA hydrolas 43.6 9.6 0.00028 18.8 1.2 39 90-135 4-45 (148) 8 >2ea9_A JW2626, hypothetical p 42.5 22 0.00066 16.6 2.9 31 146-176 36-66 (105) 9 >1c8b_A Spore protease; novel 39.6 15 0.00043 17.7 1.6 78 2-96 80-163 (336) 10 >2b0c_A Putative phosphatase; 29.7 15 0.00044 17.7 0.3 82 1-94 8-98 (129) 11 >2fkc_A R.HINP1I restriction e 28.4 23 0.00069 16.5 1.1 31 144-174 135-166 (247) 12 >1j26_A Immature colon carcino 23.4 45 0.0013 14.8 1.8 25 90-114 11-37 (112) 13 >2fph_X YLMH; division protein 21.5 58 0.0017 14.1 2.8 27 146-172 2-28 (79) 14 >1w6s_A Methanol dehydrogenase 21.4 45 0.0013 14.8 1.5 18 2-19 35-52 (84) 15 >3eeq_A Putative cobalamin bio 21.0 59 0.0018 14.1 4.1 57 64-124 60-117 (126) 16 >2b3t_B RF-1, peptide chain re 21.0 56 0.0016 14.2 1.9 19 95-113 2-22 (80) 17 >2b68_A Defensin; antibacteria 20.6 18 0.00053 17.2 -0.7 15 6-20 1-15 (43) No 1 >>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli K12} (A:) Probab=100.00 E-value=0 Score=471.77 Aligned_cols=188 Identities=36% Similarity=0.592 Sum_probs=182.4 Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCC Q ss_conf 98999858787366067410489999999998279854-44321278851479748999823340200337999999405 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW-KKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFY 79 (189) Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~ 79 (189) |||||||||||++|++|||||||+++|.||+.+++++. .+++.+.++++.+.+.+++|+||+||||+||+||++++++| T Consensus 2 m~li~GLGNPG~~Y~~TRHNiGf~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kp~TyMN~SG~~V~~~~~~~ 81 (193) T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193) T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCEECCCCCHHHHHHHHHH T ss_conf 79999768994111728507899999999998599843334664021124306735999965500213643069999983 Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 756633348984044323382366111588873103333310687--313667506898776702424378988899999 Q gi|254780225|r 80 KLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGK--NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYF 157 (189) Q Consensus 80 ~i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg~--~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~ 157 (189) +|+ +++++|||||+|+|+|++|+|.+||++||||||||+++||+ ||+|||||||||+.++++++|||++|+++|++. T Consensus 82 ki~-~~~ilVihDdldlp~G~irlk~gGs~~GHNGlkSI~~~lgt~~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~ 160 (193) T 2pth_A 82 RIN-PDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193) T ss_dssp TCC-GGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH T ss_pred CCC-HHHEEEEECCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHH T ss_conf 899-8995766501013699723435998555343899999973122232211110488667981576269979999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC Q ss_conf 99999999999999980998999998633589 Q gi|254780225|r 158 LLPIIDNIARSLPLLAKREDVSFLNHIVSVRK 189 (189) Q Consensus 158 i~~~i~~~~~~i~~~~~~~~~~~mn~~n~~~k 189 (189) |+++++.++++++.++.++++.+||++|+.+| T Consensus 161 l~~~i~~~~~~l~~~~~~~~~~~mn~~n~~~~ 192 (193) T 2pth_A 161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA 192 (193) T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 99999999999999997799999999858488 No 2 >>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} (A:) Probab=100.00 E-value=0 Score=472.88 Aligned_cols=187 Identities=32% Similarity=0.566 Sum_probs=182.8 Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCC Q ss_conf 98999858787366067410489999999998279854443212788514797489998233402003379999994057 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYK 80 (189) Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~ 80 (189) |||||||||||++|++|||||||+++|.||+.+++++++.++.+.++.+.+.+.+|+|+||+||||+||+||++++++|+ T Consensus 17 ~~LivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~~ 96 (205) T 1ryb_A 17 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQ 96 (205) T ss_dssp CEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT T ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHC T ss_conf 24999828998120569326899999999998499945112474789985168528998368400136456777776602 Q ss_pred CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 566333489840443233823661115888731033333106-87-3136675068987767024243789888999999 Q gi|254780225|r 81 LPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKC-GK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFL 158 (189) Q Consensus 81 i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~l-g~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i 158 (189) |+ +++|+|||||||||+|++|+|.+||++||||||||+++| |+ +|+|||||||||++++++++|||++|+++|++.+ T Consensus 97 i~-~~~ilVihDdldl~~Gkirlk~~Gs~~GHNGlkSI~~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLs~F~~~E~~~l 175 (205) T 1ryb_A 97 VP-LRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQI 175 (205) T ss_dssp CC-GGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHH T ss_pred CC-CCCEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 47-60168886220110687745457877654135549987189610478852368886768713204899999999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC Q ss_conf 999999999999998099899999863358 Q gi|254780225|r 159 LPIIDNIARSLPLLAKREDVSFLNHIVSVR 188 (189) Q Consensus 159 ~~~i~~~~~~i~~~~~~~~~~~mn~~n~~~ 188 (189) +++++.++++++.++.++++.+||++|+.+ T Consensus 176 ~~~~~~~~~~i~~~i~~~~~~~mn~~N~~k 205 (205) T 1ryb_A 176 DTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205 (205) T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCCCC T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 999999999999999869999999872799 No 3 >>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A (A:) Probab=100.00 E-value=0 Score=470.60 Aligned_cols=186 Identities=39% Similarity=0.655 Sum_probs=179.8 Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC-CCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCC Q ss_conf 989998587873660674104899999999982798544-4321278851479748999823340200337999999405 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWK-KKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFY 79 (189) Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~ 79 (189) +||||||||||++|++|||||||+++|.||+.+++++++ +++.+.++++.+.+.+|+|+||+||||+||+||++++++| T Consensus 4 ~~livGLGNPG~~Y~~TRHNvGf~~id~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~ 83 (191) T 2z2i_A 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY 83 (191) T ss_dssp CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT T ss_pred CEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHC T ss_conf 56999828995000769606899999999998388976234576378654305623788750267766358899999815 Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 756633348984044323382366111588873103333310687-3136675068987767024243789888999999 Q gi|254780225|r 80 KLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFL 158 (189) Q Consensus 80 ~i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i 158 (189) +|+ +++++|||||+|||+|++|+|.+||+|||||||||+++||+ +|+|||||||||++++++++|||++|+++|++.+ T Consensus 84 ki~-~~~ilVihDdldlp~Gkirlk~~Gs~gGHNGlkSI~~~Lgt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~~l 162 (191) T 2z2i_A 84 SVA-PANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162 (191) T ss_dssp TCC-GGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH T ss_pred CCC-HHHEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 898-7897998445778775189836997765168999998628975106664278997657610112789998999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCC Q ss_conf 99999999999999809989999986335 Q gi|254780225|r 159 LPIIDNIARSLPLLAKREDVSFLNHIVSV 187 (189) Q Consensus 159 ~~~i~~~~~~i~~~~~~~~~~~mn~~n~~ 187 (189) +++++.++++++.++.++++.+||++|++ T Consensus 163 ~~~~~~~~~~i~~~i~~~~~~~~n~~Ns~ 191 (191) T 2z2i_A 163 PTICEQAADATELLIEQGMEPAQNRVHAW 191 (191) T ss_dssp HHHHHHHHHHHHHHHHC------------ T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHCC T ss_conf 99999999999999978999999987287 No 4 >>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} (A:) Probab=52.04 E-value=18 Score=17.22 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=53.8 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189) .+|+|+|||= ..=--+|..+++.|.+.+..+.. |.++.--| .|.. ++.+. T Consensus 3 ilIlGiGN~l----~gDDgvG~~v~~~L~~~~~~~~~-----------------v~~~d~g~----~~~~---l~~~l-- 52 (162) T 1cfz_A 3 ILVLGVGNIL----LTDEAIGVRIVEALEQRYILPDY-----------------VEILDGGT----AGME---LLGDM-- 52 (162) T ss_dssp EEEEEESCTT----BGGGGHHHHHHHHHHHHEECCTT-----------------EEEEEEET----CCGG---GHHHH-- T ss_pred EEEEEECCCC----CCCCCHHHHHHHHHHHHCCCCCC-----------------EEEEECCC----CHHH---HHHHH-- T ss_conf 9999989866----26170999999999873689998-----------------49999998----8799---99986-- Q ss_pred CCCCCEEEEEE--CCCCCCCCEEEEC--------CCCCCCCC-HHHHHHHCCC--CCEE--EEEECC Q ss_conf 66333489840--4432338236611--------15888731-0333331068--7313--667506 Q gi|254780225|r 82 PNLENYLVIHD--DLDLDFGTLRLKT--------GGGDAGHN-GLKSISEKCG--KNYK--RLRIGI 133 (189) Q Consensus 82 ~~~~~ilVihD--dldL~~G~irlk~--------~Gg~gGHN-GlksI~~~lg--~~f~--RlRIGI 133 (189) ...+.++||-. +.+.|+|.++.-. ..+-..|+ ++.++...+. .+++ -.=+|| T Consensus 53 ~~~d~vIivDa~~~~~~~pG~v~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~~~~p~~v~iigi 119 (162) T 1cfz_A 53 ANRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV 119 (162) T ss_dssp SSCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCCEEEEEECHHHCCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 3898499999850379998589997246633001657586658999999999972899984999999 No 5 >>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A (A:) Probab=51.06 E-value=15 Score=17.66 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=56.9 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189) .+|+|+|||- ..=--+|.++++.|.+...-. ..++.. . ..|.-+...+..++ T Consensus 6 ilIiGiGN~l----~gDDg~G~~v~~~L~~~~~~~-----------------v~~~~~--g----~~~~~l~~~l~~~~- 57 (159) T 2e85_A 6 DVLLCVGNSM----MGDDGAGPLLAEKCAAAPKGN-----------------WVVIDG--G----SAPENDIVAIRELR- 57 (159) T ss_dssp EEEEEECCGG----GGGGGHHHHHHHHHHHSCCTT-----------------CEEEEC--T----TCSGGGHHHHHHHC- T ss_pred EEEEEECCCC----CCCCCHHHHHHHHHHHHCCCC-----------------EEEEEC--C----CCHHHHHHHHHHCC- T ss_conf 8999989853----150728999999998558998-----------------799989--9----87799999998579- Q ss_pred CCCCCEEEEEEC--CCCCCCCEEEEC------CCCCCCCC-HHHHHHHCCCCCEEE-EEECC Q ss_conf 663334898404--432338236611------15888731-033333106873136-67506 Q gi|254780225|r 82 PNLENYLVIHDD--LDLDFGTLRLKT------GGGDAGHN-GLKSISEKCGKNYKR-LRIGI 133 (189) Q Consensus 82 ~~~~~ilVihDd--ldL~~G~irlk~------~Gg~gGHN-GlksI~~~lg~~f~R-lRIGI 133 (189) + +.+|+-|= .+.++|+++.-. ..+...|+ ++.++.+.++..-++ +=+|| T Consensus 58 --~-d~vIivDav~~g~~pG~i~~~~~~~~~~~~~~s~H~~~l~~ll~~l~~~~~~v~iigi 116 (159) T 2e85_A 58 --P-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGI 116 (159) T ss_dssp --C-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHHHHHSEEEEEEE T ss_pred --C-CEEEEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE T ss_conf --8-7899997310789997799971045002037887876699999998488983999999 No 6 >>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protein structure initiative; 1.50A {Shigella flexneri} (A:) Probab=47.70 E-value=21 Score=16.81 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=27.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3789888999999999999999999998099 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKRE 176 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~~~~~ 176 (189) +-+.|+++|...+++++..+++.+|..+..+ T Consensus 50 i~G~Fs~~~~~~LdqaFP~~ikqlE~ml~sG 80 (133) T 2inw_A 50 IRGRFSDVDAYHLDQAFPLLXKQLELXLTGG 80 (133) T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 2462699999999999999999999986337 No 7 >>2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:) Probab=43.55 E-value=9.6 Score=18.83 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=25.0 Q ss_pred EEECCCCCCCCEEEEC--CCCCCCCCHHHHHHHCCCCC-EEEEEECCCC Q ss_conf 8404432338236611--15888731033333106873-1366750689 Q gi|254780225|r 90 IHDDLDLDFGTLRLKT--GGGDAGHNGLKSISEKCGKN-YKRLRIGIGR 135 (189) Q Consensus 90 ihDdldL~~G~irlk~--~Gg~gGHNGlksI~~~lg~~-f~RlRIGIG~ 135 (189) +-+++++|...+++++ ++|.||+|==| ++ =.+|++=+.. T Consensus 4 ~~~~i~I~~~~l~~~f~RSsGpGGQ~VNK-------t~skV~l~~~~~~ 45 (148) T 2jy9_A 4 ISRTVSIADNELEITAIRAQGAGGQHVNK-------TSSAIHLRFDIRA 45 (148) T ss_dssp CSSSCCBCSTTCEEEEECCSCCCSSCSCS-------CSCEEEEEECSTT T ss_pred CCCCCCCCHHHEEEEEEECCCCCCCCCCH-------HCCEEEEEEECCC T ss_conf 47878257699078988767998764012-------2201478973144 No 8 >>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} (A:) Probab=42.51 E-value=22 Score=16.63 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=26.9 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3789888999999999999999999998099 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKRE 176 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~~~~~ 176 (189) +-+.|+++|...+++++....+.+|..+..+ T Consensus 36 i~G~Fs~~~~~~Ld~aFP~~ikqlE~ml~sG 66 (105) T 2ea9_A 36 ITGKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105) T ss_dssp EESCCCTTHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3462699999899999999999999986458 No 9 >>1c8b_A Spore protease; novel fold; 3.00A {Bacillus megaterium} (A:36-371) Probab=39.61 E-value=15 Score=17.72 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=43.7 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHH-HHCCCCCCCCCCEEEEEECCCC-EEEEEEEC----CCHHHHCCHHHHHH Q ss_conf 899985878736606741048999999999-8279854443212788514797-48999823----34020033799999 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHS-FHFFPAWKKKFHAEISEGQLDG-LRTILIKP----QTFMNLSGQSLLEV 75 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~-~~~~~~~~~k~~~~~~~~~~~~-~~v~l~kP----~tyMN~SG~sv~~~ 75 (189) .|+|||||.- -|--..|-.+++.+.- ++-....... ..++ ..|--+-| +|-| +++.-|+.+ T Consensus 80 vLVVGLGN~~----vTPDALGP~vv~~l~VTRHL~~~~p~~--------~~~g~r~VsaiaPGVmg~TGi-ET~EIi~gi 146 (336) T 1c8b_A 80 CLVVGLGNLS----VTPDALGPKAVDNLLITRHLFELQPES--------VQDGFRPVSAIVPGVMGMTGI-ETSDIIFGV 146 (336) T ss_dssp EEEEECSCSS----SGGGCHHHHHHTTCCCCHHHHHHSCCS--------SCSSCCCEEEECSGGGCCCSS-CHHHHHHHH T ss_pred EEEEECCCCC----CCCCCCCHHEECCEEEEHHHHHHCCHH--------HCCCCCEEEEECCCCCCCCCC-CHHHHHHHH T ss_conf 7999688877----786563701112353243045547254--------507871256875875503442-499999999 Q ss_pred HHCCCCCCCCCEEEEEECCCC Q ss_conf 940575663334898404432 Q gi|254780225|r 76 MNFYKLPNLENYLVIHDDLDL 96 (189) Q Consensus 76 ~~~~~i~~~~~ilVihDdldL 96 (189) +...| | +++|.-|-|.- T Consensus 147 v~k~k---P-d~VIaIDALAa 163 (336) T 1c8b_A 147 VKKVN---P-DFIIAIDALAA 163 (336) T ss_dssp HHHHC---C-SEEEEEEEECC T ss_pred HHHCC---C-CEEEEECHHHC T ss_conf 87518---9-89999601014 No 10 >>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomics, PSI, protein structure initiative; HET: G1P; 2.00A {Escherichia coli K12} (A:1-16,A:94-206) Probab=29.67 E-value=15 Score=17.68 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=40.9 Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC--CCCC----CEEEEEE-CCCC-EEEEEEECCCHHH-HCCHH Q ss_conf 98999858787366067410489999999998279854--4432----1278851-4797-4899982334020-03379 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW--KKKF----HAEISEG-QLDG-LRTILIKPQTFMN-LSGQS 71 (189) Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~--~~k~----~~~~~~~-~~~~-~~v~l~kP~tyMN-~SG~s 71 (189) |+.|+-|||||-. .+++.|.+. +.+.. .... ...+-+. .+.. -..++....+.+. -.... T Consensus 8 ~~~~~~~~~Pgv~----------e~L~~L~~~-g~~i~i~Tn~~~~~~~~~~~~~~gl~~~fd~v~~~~~~~~~KP~~~~ 76 (129) T 2b0c_A 8 MLYIFDLGNPEVI----------AIMHKLREQ-GHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARI 76 (129) T ss_dssp CEEEECCBTHHHH----------HHHHHHHHT-TCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHH T ss_pred EEEEECCCCCHHH----------HHHHHHHHC-CCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHH T ss_conf 2999919992067----------899999865-98267631620899999875222535454389872135542026789 Q ss_pred HHHHHHCCCCCCCCCEEEEEECC Q ss_conf 99999405756633348984044 Q gi|254780225|r 72 LLEVMNFYKLPNLENYLVIHDDL 94 (189) Q Consensus 72 v~~~~~~~~i~~~~~ilVihDdl 94 (189) ...+++.++++ +++.++|=|.. T Consensus 77 ~~~~~~~~g~~-p~~~i~IgD~~ 98 (129) T 2b0c_A 77 YQHVLQAEGFS-PSDTVFFDDNA 98 (129) T ss_dssp HHHHHHHHTCC-GGGEEEEESCH T ss_pred HHHHHHHCCCC-CCEEEEECCCH T ss_conf 99999973989-21089990898 No 11 >>2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA superhelix, protein-DNA-metal ION complex, hydrolase/DNA complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A 2fkh_B 2fl3_A 2flc_A (A:) Probab=28.38 E-value=23 Score=16.52 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=16.1 Q ss_pred CCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHC Q ss_conf 24378988899999999-99999999999980 Q gi|254780225|r 144 RHVLGNFSSPERYFLLP-IIDNIARSLPLLAK 174 (189) Q Consensus 144 ~yVL~~f~~~E~~~i~~-~i~~~~~~i~~~~~ 174 (189) .-.+..||.+|++.+-. .-++-...+..++. T Consensus 135 rmFi~Efs~keq~~iln~f~~Nkilvl~DI~r 166 (247) T 2fkc_A 135 RMFMTEFSQEEQNIVLNWLEKNRVLVLTDILR 166 (247) T ss_dssp CCCGGGSCHHHHHHHHHHHHHTHHHHHHHHHT T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 10003330777999999999727999999982 No 12 >>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=23.36 E-value=45 Score=14.77 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=18.2 Q ss_pred EEECCCCCCCCEEEE--CCCCCCCCCH Q ss_conf 840443233823661--1158887310 Q gi|254780225|r 90 IHDDLDLDFGTLRLK--TGGGDAGHNG 114 (189) Q Consensus 90 ihDdldL~~G~irlk--~~Gg~gGHNG 114 (189) .-+|+.+|+-.++++ ..+|.||+|= T Consensus 11 ~~~~~~Ip~~~l~~~~~RssGpGGQ~V 37 (112) T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNV 37 (112) T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCC T ss_pred HHHCCCCCHHHEEEEEEECCCCCCCCC T ss_conf 340470487893799887679999844 No 13 >>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae R6} (X:1-79) Probab=21.55 E-value=58 Score=14.15 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=19.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 378988899999999999999999999 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLL 172 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~ 172 (189) +|+.|+++|+..+..+++.+..+.... T Consensus 2 i~~hf~~ee~~~~~ri~d~~~~a~~~~ 28 (79) T 2fph_X 2 IYQHFSIEDRPFLDKGMEWIKKVEDSY 28 (79) T ss_dssp CCCCCCGGGHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 310078757999999999999999659 No 14 >>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} (A:220-303) Probab=21.38 E-value=45 Score=14.81 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=10.7 Q ss_pred EEEEECCCCCHHHHCCCC Q ss_conf 899985878736606741 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRH 19 (189) Q Consensus 2 ~livGLGNPG~~y~~TRH 19 (189) ++.+|.|||.+-|...|. T Consensus 35 lvy~~tGnp~p~~~~~r~ 52 (84) T 1w6s_A 35 LIYFGTGNPAPWNETMRP 52 (84) T ss_dssp EEEEECCCCSCSCGGGSC T ss_pred EEEECCCCCCCCCCCEEC T ss_conf 456413345775310004 No 15 >>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} (A:1-126) Probab=20.98 E-value=59 Score=14.08 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=39.2 Q ss_pred HHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHH-HCCCC Q ss_conf 02003379999994057566333489840443233823661115888731033333-10687 Q gi|254780225|r 64 FMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSIS-EKCGK 124 (189) Q Consensus 64 yMN~SG~sv~~~~~~~~i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~-~~lg~ 124 (189) |.--+|.+|+.++.+.+-+..+-=+|+-|| -|+.-+-.-|||+|-|-+---+ +.||. T Consensus 60 fi~A~Gi~vR~iapll~~K~~DPaVivvDe----~g~~vIpLLsGHgGAN~la~~iA~~lga 117 (126) T 3eeq_A 60 FVMALEGATRIVCKYAKSKTEDPAIVCIDD----KINYVIPLLGGHWGANDIARELSVILNS 117 (126) T ss_dssp EESCHHHHHHHHHHHCCCTTTCCEEEEECT----TCCEEEEEECTTTTHHHHHHHHHHHTTC T ss_pred EEECHHHHHHHHHHHHCCCCCCCCEEEECC----CCCEEEECCCCCHHHHHHHHHHHHHHCC T ss_conf 994238999985566157677997899928----9999997047762099999999986198 No 16 >>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:215-294) Probab=20.96 E-value=56 Score=14.24 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=12.8 Q ss_pred CCCCCCEEEE--CCCCCCCCC Q ss_conf 3233823661--115888731 Q gi|254780225|r 95 DLDFGTLRLK--TGGGDAGHN 113 (189) Q Consensus 95 dL~~G~irlk--~~Gg~gGHN 113 (189) |++...+++. .++|+||+| T Consensus 2 ei~~~dl~~~~~rssGpGGQ~ 22 (80) T 2b3t_B 2 DVNPADLRIDTFRSSGAGGQH 22 (80) T ss_dssp CCCSSSEEEEECCSSCCCTTT T ss_pred CCCCCCCEEEEECCCCCCCCC T ss_conf 407102479872288755542 No 17 >>2b68_A Defensin; antibacterial peptide, cysteine-rich peptide, antimicrobial protein; NMR {Crassostrea gigas} (A:) Probab=20.62 E-value=18 Score=17.18 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.7 Q ss_pred ECCCCCHHHHCCCCC Q ss_conf 858787366067410 Q gi|254780225|r 6 GLGNPGHEYCENRHN 20 (189) Q Consensus 6 GLGNPG~~y~~TRHN 20 (189) |.|-||++|+-+||- T Consensus 1 gfgcp~~q~~cn~hc 15 (43) T 2b68_A 1 GFGCPGNQLKCNNHC 15 (43) T ss_dssp CCSCSSCSHHHHHHH T ss_pred CCCCCCCHHHHHHHC T ss_conf 988872143554105 Done!