HHSEARCH alignment of GI: 254780225 and SCOP domain: d1ryba_

Alignment
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}
Probab=100.00  E-value=0  Score=468.38  Aligned_cols=186  Identities=32%  Similarity=0.573  Sum_probs=180.5

Q ss_pred             EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC
Q ss_conf             89998587873660674104899999999982798544432127885147974899982334020033799999940575
Q gi|254780225|r    2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL   81 (189)
Q Consensus         2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i   81 (189)
                      ||||||||||++|++||||||||++|.||+.++.+++.+++.+.++...+.+.+|+|+||+||||+||+||++++++|++
T Consensus         4 ~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~~i   83 (191)
T d1ryba_           4 WLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQV   83 (191)
T ss_dssp             EEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf             59998389971104795089999999999984999340113646899860685389985684112365778878776225


Q ss_pred             CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             66333489840443233823661115888731033333106-87-31366750689877670242437898889999999
Q gi|254780225|r   82 PNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKC-GK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLL  159 (189)
Q Consensus        82 ~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~l-g~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~  159 (189)
                      + +++|+|||||||||+|++|+|.+||+|||||||||+++| |+ +|+|||||||||+.+.++++|||++|+++|++.++
T Consensus        84 ~-~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l~  162 (191)
T d1ryba_          84 P-LRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQID  162 (191)
T ss_dssp             C-GGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHH
T ss_pred             C-CCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             7-601688873001305765355577777673311289881886003787434799866587054228998999999999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             99999999999998099899999863358
Q gi|254780225|r  160 PIIDNIARSLPLLAKREDVSFLNHIVSVR  188 (189)
Q Consensus       160 ~~i~~~~~~i~~~~~~~~~~~mn~~n~~~  188 (189)
                      .+++.++++++.+++++++.+||++|+++
T Consensus       163 ~~~~~~~~~~~~~i~~~~~~~mn~~N~~~  191 (191)
T d1ryba_         163 TALEQGVDAVRTLVLKGFSGSTERFNLVQ  191 (191)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             99999999999999869999999860899


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]