HHSEARCH alignment of GI: 254780225 and SCOP domain: d2ptha_

Alignment
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=468.18  Aligned_cols=188  Identities=36%  Similarity=0.592  Sum_probs=180.9

Q ss_pred             CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCC
Q ss_conf             98999858787366067410489999999998279854-44321278851479748999823340200337999999405
Q gi|254780225|r    1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW-KKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFY   79 (189)
Q Consensus         1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~   79 (189)
                      |+|||||||||++|++||||||||++|.||+.++.+++ .+++.++++...+.+.+++|+||+||||+||++|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCEECCCCCHHHHHHHHHH
T ss_conf             79999778994011739507899999999998599944334664021135406734999965500202543379999983


Q ss_pred             CCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCC-C-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             75663334898404432338236611158887310333331068-7-313667506898776702424378988899999
Q gi|254780225|r   80 KLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCG-K-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYF  157 (189)
Q Consensus        80 ~i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg-~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~  157 (189)
                      +++ +++|+|||||+|||+|++|+|.+||+|||||||||+++|| + +|+|||||||||+.+.++++|||++|+++|++.
T Consensus        82 ~i~-~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~  160 (193)
T d2ptha_          82 RIN-PDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL  160 (193)
T ss_dssp             TCC-GGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred             CCC-HHHEEEEECCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf             899-7895878611013589733225998666554899999862330021022101488666972566079979999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf             99999999999999980998999998633589
Q gi|254780225|r  158 LLPIIDNIARSLPLLAKREDVSFLNHIVSVRK  189 (189)
Q Consensus       158 i~~~i~~~~~~i~~~~~~~~~~~mn~~n~~~k  189 (189)
                      ++.+++.++++++.++.++++.|||++|+++.
T Consensus       161 l~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
T ss_conf             99999999999999997799999999858588


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]